Citrus Sinensis ID: 011720

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
Protein Sequence
MGFEGDEEAAAIQISPKYSLFRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLTTVSYPLLVVLVMLAVKDDDKSKEGTTNGSDLPSAPTIAGNIAKDYNEPVNSTAT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEcccccccccEcccHHHEEEEEEHHHHcccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccHHEEcccccEEEEEccccHHHHHHHHHHHHccccEEEEEHHHHHHcccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHcccccccccccccccc
Coil and Loop (DISEMBL)
MGFEGDEEAAAiqispkyslfrynsplVQVSLIGLVcfccpgmfnalsgmggggqldptaannantaLYTTFSVFgilgggvynifgprvtlaAGCSTYVLYAGSFLyynhhhdqtFAVVAGAVLGIGAGllwagqgaimtsyptatrkgTYISLFWSIFNMggvvgglipfimnyhrtdaesvndKTYIAFMCFMSAGAALslailppsrvirddgtrctnikyskVSTEAIEILKLFRNWKMLLLFPaawasnffYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGtaiwggglasqlnyshddppkrldfktsgndfagpFVLYFSYGLLDAMFQSMVYWVIGAladdsetlsRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLTTVSYPLLVVLVMLAvkdddkskegttngsdlpsaptiagniakdynepvnstat
Flexible Loop (DISEMBL)
MGFEGDEEAAAIQISPKYSLFRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPpsrvirddgtrctnikyskvstEAIEILKLFRNWKMLLLFPAAWASNFFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLTTVSYPLLVVLVMLAVKDDDkskegttngsdlpsaptiagniakdynepvnstat
Low Complexity Region (SEG)
MGFEGDEEAAAIQISPKYSLFRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPtaannantalyttFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFavvagavlgigagllwagqgaIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLTTVSYPLLVVLVMLAVKDDDKSKEGTTNGSDLPSAPTIAGNIAKDYNEPVNSTAT
Disordered region (IsUnstruct)
***********IQISPKYSLFRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYS*******LDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLTTVSYPLLVVLVMLAV***************************************
Disordered Region (DISOPRED)
********************FRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAI**********************STEAIEILKLFRNWKMLLLFPAAWASNFFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLTTVSYPLLVVLVMLAV***************************************
Disordered Region (DISEMBL)
*********AAIQISPKYSLFRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLTTVSYPLLVVLVMLAVKDD***********DLPSAPTIAGNIAKDYNEPVNSTAT
Disordered Region (DISPRO)
*********AAIQISPKYSLFRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLTTVSYPLLVVLVMLAVKDDDK**********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGFEGDEEAAAIQISPKYSLFRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLTTVSYPLLVVLVMLAVKDDDKSKEGTTNGSDLPSAPTIAGNIAKDYNEPVNSTAT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	479	2.2.26 [Sep-21-2011]
Q8LG53	459	UNC93-like protein 2 OS=A	yes	no	0.878	0.917	0.770	0.0
Q56WD3	459	UNC93-like protein 1 OS=A	yes	no	0.878	0.917	0.770	0.0
Q9URX1	504	UNC93-like protein C922.0	yes	no	0.941	0.894	0.385	1e-89
O14237	489	Uncharacterized membrane	no	no	0.895	0.877	0.335	2e-54

>sp|Q8LG53|UN932_ARATH UNC93-like protein 2 OS=Arabidopsis thaliana GN=At1g18010 PE=2 SV=2

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/422 (77%), Positives = 368/422 (87%), Gaps = 1/422 (0%)

Query: 21  FRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPTAANNANTALYTTFSVFGILGG 80
           +R+NSPL QVSL+G VCFCCPGMFNALSGMGGGGQ+DPTAANNANTA+YT F+VFG+LGG
Sbjct: 27  WRFNSPLAQVSLMGFVCFCCPGMFNALSGMGGGGQVDPTAANNANTAVYTAFTVFGLLGG 86

Query: 81  GVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIM 140
           G YN+ GPR+TLAAGCSTYVLYAGSFLYYNHHH Q FA+VAGA+LG GAGLLWAG+GA+M
Sbjct: 87  GFYNVLGPRLTLAAGCSTYVLYAGSFLYYNHHHHQAFAIVAGALLGCGAGLLWAGEGAVM 146

Query: 141 TSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGA 200
           TSYP   RKGTYI+LFWSIFN+GGV+GGLIPFI+NY R+ A SVND TYIAFMCFM AG 
Sbjct: 147 TSYPPPHRKGTYIALFWSIFNLGGVIGGLIPFILNYQRSSAASVNDSTYIAFMCFMFAGV 206

Query: 201 ALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFYSY 260
            LS  ILP + VIR+DG+RC+ +KYS+ STEA  +L+LF + KMLL+ PAAWASNFFYSY
Sbjct: 207 LLSFGILPATSVIRNDGSRCSAVKYSRPSTEAAAVLRLFLDRKMLLIVPAAWASNFFYSY 266

Query: 261 QFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGT 320
           QFNNVNGL+FNLRTRG NNVFYWGAQM GS+ IGYVMDFSF+S R RG  GI +VA+ GT
Sbjct: 267 QFNNVNGLLFNLRTRGFNNVFYWGAQMAGSIAIGYVMDFSFKSRRARGFTGISLVAVIGT 326

Query: 321 AIWGGGLASQLNYSHDD-PPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGAL 379
            IW GGLA+Q  YS D  P K+LDFK SG +FAGPFVLY SYGLLDAM+QSMVYW+IGAL
Sbjct: 327 IIWAGGLANQHGYSLDKLPEKKLDFKDSGIEFAGPFVLYMSYGLLDAMYQSMVYWLIGAL 386

Query: 380 ADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLTTVSYPLLVVLVMLA 439
           ADDS+TLSRY+GFYKGVQSAGAAVAWQVDT KV L+SQLI+NWSLTTVSYPLLV+LV   
Sbjct: 387 ADDSQTLSRYSGFYKGVQSAGAAVAWQVDTRKVPLMSQLIVNWSLTTVSYPLLVLLVYFY 446

Query: 440 VK 441
           VK
Sbjct: 447 VK 448

Arabidopsis thaliana (taxid: 3702)

>sp|Q56WD3|UN931_ARATH UNC93-like protein 1 OS=Arabidopsis thaliana GN=At1g18000 PE=2 SV=2

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/422 (77%), Positives = 368/422 (87%), Gaps = 1/422 (0%)

Query: 21  FRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPTAANNANTALYTTFSVFGILGG 80
           +R+NSPL QVSL+G VCFCCPGMFNALSGMGGGGQ+DPTAANNANTA+YT F+VFG+LGG
Sbjct: 27  WRFNSPLAQVSLMGFVCFCCPGMFNALSGMGGGGQVDPTAANNANTAVYTAFTVFGLLGG 86

Query: 81  GVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIM 140
           G YN+ GPR+TLAAGCSTYVLYAGSFLYYNHHH Q FA+VAGA+LG GAGLLWAG+GA+M
Sbjct: 87  GFYNVLGPRLTLAAGCSTYVLYAGSFLYYNHHHHQAFAIVAGALLGCGAGLLWAGEGAVM 146

Query: 141 TSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGA 200
           TSYP   RKGTYI+LFWSIFN+GGV+GGLIPFI+NY R+ A SVND TYIAFMCFM AG 
Sbjct: 147 TSYPPPHRKGTYIALFWSIFNLGGVIGGLIPFILNYQRSSAASVNDSTYIAFMCFMFAGV 206

Query: 201 ALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFYSY 260
            LS  ILP + VIR+DG+RC+ +KYS+ STEA  +L+LF + KMLL+ PAAWASNFFYSY
Sbjct: 207 LLSFGILPATSVIRNDGSRCSAVKYSRPSTEAAAVLRLFLDRKMLLIVPAAWASNFFYSY 266

Query: 261 QFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGT 320
           QFNNVNGL+FNLRTRG NNVFYWGAQM GS+ IGYVMDFSF+S R RG  GI +VA+ GT
Sbjct: 267 QFNNVNGLLFNLRTRGFNNVFYWGAQMAGSIAIGYVMDFSFKSRRARGFTGISLVAVIGT 326

Query: 321 AIWGGGLASQLNYSHDD-PPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGAL 379
            IW GGLA+Q  YS D  P K+LDFK SG +FAGPFVLY SYGLLDAM+QSMVYW+IGAL
Sbjct: 327 IIWAGGLANQHGYSLDKLPEKKLDFKDSGIEFAGPFVLYMSYGLLDAMYQSMVYWLIGAL 386

Query: 380 ADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLTTVSYPLLVVLVMLA 439
           ADDS+TLSRY+GFYKGVQSAGAAVAWQVDT KV L+SQLI+NWSLTTVSYPLLV+LV   
Sbjct: 387 ADDSQTLSRYSGFYKGVQSAGAAVAWQVDTRKVPLMSQLIVNWSLTTVSYPLLVLLVYFY 446

Query: 440 VK 441
           VK
Sbjct: 447 VK 448

Arabidopsis thaliana (taxid: 3702)

>sp|Q9URX1|YLX5_SCHPO UNC93-like protein C922.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC922.05c PE=3 SV=1

 Score =  330 bits (847), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 181/470 (38%), Positives = 274/470 (58%), Gaps = 19/470 (4%)

Query: 8   EAAAIQISPKYSLFR---YNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPTAANNA 64
           +++ I   P+   F+   Y S L Q  ++  VCF CPGMFNALSG+GGGG+++   AN+A
Sbjct: 38  QSSWIYRRPRIGRFKSLAYGSALTQTIIVSWVCFLCPGMFNALSGLGGGGEVNADVANDA 97

Query: 65  NTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAV 124
           N ALY+TF+  G   G + N+ G ++TLA G + Y +Y  S L Y H +++ F +  G  
Sbjct: 98  NVALYSTFAGLGFFAGSICNLIGVKLTLAIGGTGYSVYTASLLCYKHVYNRGFVIFGGCY 157

Query: 125 LGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESV 184
           LG+ AG+LWA QGA++ SYP    K  YI++FW IFN+G V+G ++P     H +   SV
Sbjct: 158 LGLTAGMLWAAQGAVIMSYPREENKARYIAIFWGIFNLGAVIGSIVPLAQTMH-SSVNSV 216

Query: 185 NDKTYIAFMCFMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILK-LFRNWK 243
            D TY  F+  M+ G+AL+L ++ P + +++DG      K      E + +++ L++ + 
Sbjct: 217 GDGTYAGFIVLMAVGSALALFMVSPEKTVKEDGKFVHIEKSMGWKKELLGLVQTLYKEYW 276

Query: 244 MLLLFPAAWASNFFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQS 303
           +LLLFP  ++SN+F +YQFN+ N   FN+RTR LNN+ YW AQ++GS      +D+   +
Sbjct: 277 VLLLFPMFFSSNWFTTYQFNDFNLAYFNIRTRSLNNLLYWFAQIMGSAVAALFLDWQRFN 336

Query: 304 LRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKR----LDFKTSGNDFAGPFVLYF 359
              R  VG G+V +    IWGGGLA QL Y+     +      DF   G  + G   LY 
Sbjct: 337 RVIRARVGWGLVFVLICVIWGGGLAFQLKYTRKSVAESDFVVTDFTHRG--YTGYAFLYI 394

Query: 360 SYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLI 419
            YG+LDA+FQS  YW+IG+L++D+  L+ Y GFYK +QSAGAA+ +++DT  +  ++   
Sbjct: 395 FYGMLDAIFQSYAYWIIGSLSNDTNKLAVYMGFYKSLQSAGAAITYRMDTLNIPYMNYFA 454

Query: 420 INWSLTTVSYPLLVVLVMLAVKDDDKSKEGTTNGSDLPSAPTIAGNIAKD 469
             W+L   S   L+V   +  K    + EG  +       P +A  +A D
Sbjct: 455 SCWALLCGS---LIVASPVIWKKIKLTTEGIED-----EIPPLANGLAVD 496

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O14237|YEL4_SCHPO Uncharacterized membrane protein C6F6.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6F6.04c PE=4 SV=1

 Score =  213 bits (543), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 150/447 (33%), Positives = 219/447 (48%), Gaps = 18/447 (4%)

Query: 36  VCFCCPGMFNALSGMG-GGGQLDP-TAANNANTALYTTFSVFGILGGGVYNIFGPRVTLA 93
           + FCCPG++ A++G+G GGG  D    A+  N+ LY  F+V G  GG +    GPR  LA
Sbjct: 34  ILFCCPGIYLAVTGLGAGGGHPDAYHMADVTNSLLYALFTVCGWAGGPILKYLGPRWALA 93

Query: 94  AGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYI 153
            G + Y +Y G   Y+++   Q F +  GA  GI AGLLWA    I  SY  A +K  +I
Sbjct: 94  LGATGYPIYIGGLWYFDNTGKQGFTIFTGAYEGIAAGLLWASTAYISLSYSCANQKSQFI 153

Query: 154 SLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALS-LAILPPSRV 212
           +  W+I   G  VG  I F +NYH T +  V    YI F+  M+    L+ L I  PS V
Sbjct: 154 ATQWTILAFGSTVGSFIAFGINYHST-STGVPMAVYIIFIIIMACAVLLAILFIKSPSDV 212

Query: 213 IRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFYSYQFNNVNGLMFNL 272
            + DGT   +        E   + +  ++W++L L PA++AS    ++Q +++N   F+L
Sbjct: 213 RKSDGTSALSPSNKTFGQELWGLFEAAKDWRLLCLLPASFASQSTIAWQ-SHLNSYYFSL 271

Query: 273 RTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGL---AS 329
           RTR LNNV +W  Q         ++D      RTRG++G+ I A+   A   G L    S
Sbjct: 272 RTRSLNNVLFWVIQFFVPYLFTLILDAKALKRRTRGIIGLTIQAVVIMATLSGELGWIVS 331

Query: 330 QLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRY 389
           +    HD  P  LD+   G  + G  VLY   G+        V W I  L+ D +  +RY
Sbjct: 332 KHIDLHDTSPD-LDWTQRG--YGGALVLYLLMGIQYGSSIVSVQWCISLLSSDPDKYARY 388

Query: 390 TGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLTTVSYPLLVVLVMLAVKDDDK--SK 447
            G YKG Q+AG  V++ +D   VS L Q II +    V     +++  +  K+ D+  +K
Sbjct: 389 AGLYKGTQAAGMCVSFGIDAAGVSFLGQGIIYFIFLFVMCASQLIMTSIFGKETDRLSTK 448

Query: 448 EGTTNGSD-----LPSAPTIAGNIAKD 469
           E  T+        +PS  T       D
Sbjct: 449 EHFTDDKSYIDGVMPSTDTYMNEKTSD 475

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	479
224121128	462	predicted protein [Populus trichocarpa]	0.949	0.984	0.817	0.0
255549108	466	conserved hypothetical protein [Ricinus	0.943	0.969	0.808	0.0
449508376	458	PREDICTED: LOW QUALITY PROTEIN: UNC93-li	0.947	0.991	0.758	0.0
449439027	561	PREDICTED: UNC93-like protein 1-like [Cu	0.931	0.795	0.783	0.0
449508384	463	PREDICTED: UNC93-like protein 1-like [Cu	0.931	0.963	0.783	0.0
225455167	472	PREDICTED: UNC93-like protein C922.05c [	0.974	0.989	0.740	0.0
449439025	469	PREDICTED: UNC93-like protein 1-like [Cu	0.924	0.944	0.743	0.0
18394560	459	transmembrane transporter-like protein [	0.878	0.917	0.770	0.0
297844750	460	hypothetical protein ARALYDRAFT_472014 [	0.889	0.926	0.761	0.0
21536696	459	unknown [Arabidopsis thaliana]	0.878	0.917	0.767	0.0

>gi|224121128|ref|XP_002318504.1| predicted protein [Populus trichocarpa] gi|222859177|gb|EEE96724.1| predicted protein [Populus trichocarpa]

 Score =  782 bits (2019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/456 (81%), Positives = 412/456 (90%), Gaps = 1/456 (0%)

Query: 1   MGFEGDEEAAAIQISPKYSLFRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPTA 60
           MGFEGDEE+AA Q+S K S FRYNSPLVQ++LIGLVCFCCPGMFNALSGMGGGGQ++PTA
Sbjct: 1   MGFEGDEESAANQVSTK-SRFRYNSPLVQITLIGLVCFCCPGMFNALSGMGGGGQVNPTA 59

Query: 61  ANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVV 120
           ANNANTALYTTF++FG+LGGG+YNI GPR+TLAAGCSTYVLYAGSFLYYNH   Q+FA+V
Sbjct: 60  ANNANTALYTTFAIFGVLGGGIYNILGPRLTLAAGCSTYVLYAGSFLYYNHKQHQSFAIV 119

Query: 121 AGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTD 180
           AGA+LGIGAG LWAG+GAIMTSYP   RKGTYISLFWSIFNMGGV+GGLIPFI+NY+R++
Sbjct: 120 AGAILGIGAGFLWAGEGAIMTSYPPPHRKGTYISLFWSIFNMGGVIGGLIPFILNYNRSE 179

Query: 181 AESVNDKTYIAFMCFMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFR 240
           A SVND TYI FMCFM+AG  LSLAILPPS+V+RDDGTRCTNIKYSKVSTEA+EI KLF 
Sbjct: 180 AASVNDGTYIGFMCFMTAGTLLSLAILPPSKVVRDDGTRCTNIKYSKVSTEAVEIGKLFF 239

Query: 241 NWKMLLLFPAAWASNFFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFS 300
           NWKMLL+ PAAWASNFFYSYQFNNVNG +FNLRTRGLNNVFYWGAQM+GSVGIGY++DFS
Sbjct: 240 NWKMLLIAPAAWASNFFYSYQFNNVNGALFNLRTRGLNNVFYWGAQMVGSVGIGYILDFS 299

Query: 301 FQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFS 360
           FQS R RG VGIGIVA  GTAIW GGLA Q+ Y H+D P +LDFK SG+DFAGPFVLYFS
Sbjct: 300 FQSRRKRGFVGIGIVAALGTAIWAGGLAKQVGYKHNDLPPKLDFKDSGSDFAGPFVLYFS 359

Query: 361 YGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLII 420
           YGLLDAMFQSMVYWVIGALADDSE LSRY GFYKGVQSAGAAVAWQVD HKV LLSQLI+
Sbjct: 360 YGLLDAMFQSMVYWVIGALADDSEILSRYVGFYKGVQSAGAAVAWQVDAHKVPLLSQLIV 419

Query: 421 NWSLTTVSYPLLVVLVMLAVKDDDKSKEGTTNGSDL 456
           NWSLTTVSYPLL +LVMLAVKDD K +E + N + +
Sbjct: 420 NWSLTTVSYPLLAILVMLAVKDDQKGEEPSINPASM 455

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549108|ref|XP_002515609.1| conserved hypothetical protein [Ricinus communis] gi|223545247|gb|EEF46754.1| conserved hypothetical protein [Ricinus communis]

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/454 (80%), Positives = 410/454 (90%), Gaps = 2/454 (0%)

Query: 1   MGFEGDEEAAAIQISPKYSLFRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPTA 60
           MGF+GD+E+      P  S+ RYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQ+DPTA
Sbjct: 1   MGFDGDQESGTKL--PNKSILRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQVDPTA 58

Query: 61  ANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVV 120
           ANNANTALYTTF++FG+LGGG+YNI GPR+TLAAGCSTYVLYAGSFLYYNH+  QTFA+V
Sbjct: 59  ANNANTALYTTFAIFGVLGGGIYNILGPRLTLAAGCSTYVLYAGSFLYYNHYQHQTFAIV 118

Query: 121 AGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTD 180
           AG +LG+GAGLLWAG+GAIMTSYP   RKGTYIS+FWSIFNMGGV+GGLIPF +NYHR++
Sbjct: 119 AGGILGVGAGLLWAGEGAIMTSYPPPHRKGTYISIFWSIFNMGGVIGGLIPFFLNYHRSE 178

Query: 181 AESVNDKTYIAFMCFMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFR 240
           A SVND TYI FMCFM+AG  LSLAILPPS+V+RDDGT C+NIKYSKVSTEA EI+KLF 
Sbjct: 179 AASVNDATYIGFMCFMAAGTLLSLAILPPSQVVRDDGTHCSNIKYSKVSTEATEIVKLFL 238

Query: 241 NWKMLLLFPAAWASNFFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFS 300
           NWKMLL+ PAAWASNFFYSYQFNNVNG++FNLRTRGLNNVFYWGAQMLGSVGIG+V+DFS
Sbjct: 239 NWKMLLIVPAAWASNFFYSYQFNNVNGVLFNLRTRGLNNVFYWGAQMLGSVGIGWVLDFS 298

Query: 301 FQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFS 360
           F+S + RG VGIGIVA+ GTAIWGGGLA+QL YSH++ P +LDFK SG+DF GPFVLYFS
Sbjct: 299 FKSRKMRGFVGIGIVAVLGTAIWGGGLANQLRYSHNNLPPKLDFKDSGSDFGGPFVLYFS 358

Query: 361 YGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLII 420
           YGLLDAMFQS VYWVIGALADDSE LSRY GFYKGVQSAGAA+AWQVDTHKV LLSQLI+
Sbjct: 359 YGLLDAMFQSSVYWVIGALADDSEILSRYVGFYKGVQSAGAAIAWQVDTHKVPLLSQLIV 418

Query: 421 NWSLTTVSYPLLVVLVMLAVKDDDKSKEGTTNGS 454
           NWSLTTVSYPLL+VLVMLAVKDD K +E  +N S
Sbjct: 419 NWSLTTVSYPLLIVLVMLAVKDDHKIEERVSNES 452

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449508376|ref|XP_004163297.1| PREDICTED: LOW QUALITY PROTEIN: UNC93-like protein 1-like [Cucumis sativus]

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/455 (75%), Positives = 396/455 (87%), Gaps = 1/455 (0%)

Query: 1   MGFEGDEEAAAIQISPKYSLFRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPTA 60
           MGF+GDEE++A ++S K S FR+NSPLVQV LIGLVCFCCPGMFNALSGMGGGGQ++   
Sbjct: 1   MGFQGDEESSAPRVSSK-SQFRFNSPLVQVFLIGLVCFCCPGMFNALSGMGGGGQMNTAV 59

Query: 61  ANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVV 120
           A+NA+TALYTTF++FGI+GGGVYNI GPR+TL AGC TYVLYAGSFLYYNH  DQTFA++
Sbjct: 60  ADNASTALYTTFAIFGIIGGGVYNILGPRLTLFAGCITYVLYAGSFLYYNHFKDQTFAII 119

Query: 121 AGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTD 180
           AGA+LG+GAG LWAG+GAIMTSYP   RKGTYIS+FWSIFNMGGVVGGLIPFI+NYHRT 
Sbjct: 120 AGAILGVGAGFLWAGEGAIMTSYPPPRRKGTYISIFWSIFNMGGVVGGLIPFILNYHRTT 179

Query: 181 AESVNDKTYIAFMCFMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFR 240
           A SVND TYI FMCFMS GA +SLAILPPSRV+RDDG+RCTNI YS VS E +EILKLF 
Sbjct: 180 ASSVNDGTYIGFMCFMSIGALISLAILPPSRVVRDDGSRCTNITYSSVSVEFVEILKLFL 239

Query: 241 NWKMLLLFPAAWASNFFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFS 300
           NWKMLL+ PAAW+SNFFY+YQFNNVNG++FNLRTRG NNVFYWGAQM+GSVGIGY++DFS
Sbjct: 240 NWKMLLIVPAAWSSNFFYTYQFNNVNGVLFNLRTRGFNNVFYWGAQMVGSVGIGYILDFS 299

Query: 301 FQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFS 360
           F+S RTRGL GI +VAL GT IW GGLA+QL YS  +   +LDFK SG+DF GPF LYF 
Sbjct: 300 FKSRRTRGLFGISLVALLGTGIWAGGLANQLRYSRHNVLDKLDFKDSGSDFVGPFFLYFC 359

Query: 361 YGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLII 420
           +GLLDAMFQSMVYWVIGALADDSETLSRY+GFYKGVQSAGAAVAWQ+DTH VS +SQL++
Sbjct: 360 FGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQIDTHHVSFMSQLVV 419

Query: 421 NWSLTTVSYPLLVVLVMLAVKDDDKSKEGTTNGSD 455
           NWSLT++SYPLL  LV  AVK+D K  + T   ++
Sbjct: 420 NWSLTSLSYPLLGFLVFFAVKEDKKPTDETCKEAN 454

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439027|ref|XP_004137289.1| PREDICTED: UNC93-like protein 1-like [Cucumis sativus]

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/449 (78%), Positives = 396/449 (88%), Gaps = 3/449 (0%)

Query: 1   MGFEGDEEAAAIQISPKYSLFRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPTA 60
           MGFEGDEE+++ QI  K S FRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLD T 
Sbjct: 1   MGFEGDEESSSPQILTK-SPFRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDSTV 59

Query: 61  ANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVV 120
           A+NA+TALYTTF++FGI+GGGVYNI GPR+TL AGCSTYVLYAGSFLYYNH+ DQTFA++
Sbjct: 60  ADNASTALYTTFAIFGIIGGGVYNILGPRLTLFAGCSTYVLYAGSFLYYNHYKDQTFAII 119

Query: 121 AGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTD 180
           AGA+LG+GAG LWAG+GAIMTSYP   RKGTYIS+FWSIFNMGGVVGGLIPF++NYHRT 
Sbjct: 120 AGAILGVGAGFLWAGEGAIMTSYPPPGRKGTYISIFWSIFNMGGVVGGLIPFVLNYHRTT 179

Query: 181 AESVNDKTYIAFMCFMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFR 240
           A SVND TYI FMCFMS GA  SLAILPPSRV+RDDG+RCTNIKYS VS E +EILKLF 
Sbjct: 180 ASSVNDGTYIGFMCFMSIGAVTSLAILPPSRVVRDDGSRCTNIKYSSVSVEFVEILKLFL 239

Query: 241 NWKMLLLFPAAWASNFFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFS 300
           NWKMLL+ PAAW+SNFFY+YQFNNVNG +FNLRTRG NNVFYWGAQMLGS+GIGY+MDFS
Sbjct: 240 NWKMLLIVPAAWSSNFFYTYQFNNVNGALFNLRTRGFNNVFYWGAQMLGSIGIGYIMDFS 299

Query: 301 FQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFS 360
           F+S +TRGL G+ +VAL GT IW GGLA+QL YS +    +LDFK SG++F GPF LYF 
Sbjct: 300 FKSRKTRGLFGVSLVALLGTGIWAGGLANQLRYSRNKVLDKLDFKESGSEFVGPFFLYFC 359

Query: 361 YGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLII 420
           +GLLDAMFQSMVYWVIGALADDSETLSRY+GFYKGVQSAGAAVAWQVD H VS + QL++
Sbjct: 360 FGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDNHHVSFMRQLVV 419

Query: 421 NWSLTTVSYPLLVVLVMLAVKDD--DKSK 447
           NWSLTT+SYPLL+VLV LAV DD  D+ K
Sbjct: 420 NWSLTTLSYPLLLVLVFLAVNDDVHDEKK 448

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449508384|ref|XP_004163299.1| PREDICTED: UNC93-like protein 1-like [Cucumis sativus]

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/449 (78%), Positives = 396/449 (88%), Gaps = 3/449 (0%)

Query: 1   MGFEGDEEAAAIQISPKYSLFRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPTA 60
           MGFEGDEE+++ QI  K S FRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLD T 
Sbjct: 1   MGFEGDEESSSPQILTK-SPFRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDSTV 59

Query: 61  ANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVV 120
           A+NA+TALYTTF++FGI+GGGVYNI GPR+TL AGCSTYVLYAGSFLYYNH+ DQTFA++
Sbjct: 60  ADNASTALYTTFAIFGIIGGGVYNILGPRLTLFAGCSTYVLYAGSFLYYNHYKDQTFAII 119

Query: 121 AGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTD 180
           AGA+LG+GAG LWAG+GAIMTSYP   RKGTYIS+FWSIFNMGGVVGGLIPF++NYHRT 
Sbjct: 120 AGAILGVGAGFLWAGEGAIMTSYPPPGRKGTYISIFWSIFNMGGVVGGLIPFVLNYHRTT 179

Query: 181 AESVNDKTYIAFMCFMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFR 240
           A SVND TYI FMCFMS GA  SLAILPPSRV+RDDG+RCTNIKYS VS E +EILKLF 
Sbjct: 180 ASSVNDGTYIGFMCFMSIGAVTSLAILPPSRVVRDDGSRCTNIKYSSVSVEFVEILKLFL 239

Query: 241 NWKMLLLFPAAWASNFFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFS 300
           NWKMLL+ PAAW+SNFFY+YQFNNVNG +FNLRTRG NNVFYWGAQMLGS+GIGY+MDFS
Sbjct: 240 NWKMLLIVPAAWSSNFFYTYQFNNVNGALFNLRTRGFNNVFYWGAQMLGSIGIGYIMDFS 299

Query: 301 FQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFS 360
           F+S +TRGL G+ +VAL GT IW GGLA+QL YS +    +LDFK SG++F GPF LYF 
Sbjct: 300 FKSRKTRGLFGVSLVALLGTGIWAGGLANQLRYSRNKVLDKLDFKESGSEFVGPFFLYFC 359

Query: 361 YGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLII 420
           +GLLDAMFQSMVYWVIGALADDSETLSRY+GFYKGVQSAGAAVAWQVD H VS + QL++
Sbjct: 360 FGLLDAMFQSMVYWVIGALADDSETLSRYSGFYKGVQSAGAAVAWQVDNHHVSFMRQLVV 419

Query: 421 NWSLTTVSYPLLVVLVMLAVKDD--DKSK 447
           NWSLTT+SYPLL+VLV LAV DD  D+ K
Sbjct: 420 NWSLTTLSYPLLLVLVFLAVNDDVHDEKK 448

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455167|ref|XP_002269909.1| PREDICTED: UNC93-like protein C922.05c [Vitis vinifera] gi|302144007|emb|CBI23112.3| unnamed protein product [Vitis vinifera]

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/477 (74%), Positives = 401/477 (84%), Gaps = 10/477 (2%)

Query: 1   MGFEGDEEAAAIQISPKYSLFRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPTA 60
           MGF  DEE+  +   P  S+FRYNSPLVQV LIGLVCFCCPGMFNALSGMGGGGQ+D TA
Sbjct: 1   MGFGEDEES--VVGLPNKSIFRYNSPLVQVCLIGLVCFCCPGMFNALSGMGGGGQVDATA 58

Query: 61  ANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVV 120
           ANNANTALYTTF++FG+LGGG+YNIFGPR TL AGCSTYVLYAGSFLYYNH+  Q FA+V
Sbjct: 59  ANNANTALYTTFAIFGVLGGGIYNIFGPRFTLFAGCSTYVLYAGSFLYYNHYQHQAFAIV 118

Query: 121 AGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTD 180
           AGA+LGIGAGLLWAGQGAIMTSYP   RKG+YISLFWSIFNMGGVVGGLIPFI+NY+R++
Sbjct: 119 AGAILGIGAGLLWAGQGAIMTSYPPPGRKGSYISLFWSIFNMGGVVGGLIPFILNYNRSE 178

Query: 181 AESVNDKTYIAFMCFMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFR 240
           A SVND TYI FMCFMS G  L+LAIL PSRV+RDDG+ CTNIKYS VSTEA+EILKLFR
Sbjct: 179 AASVNDGTYIGFMCFMSVGTVLTLAILHPSRVVRDDGSHCTNIKYSDVSTEAVEILKLFR 238

Query: 241 NWKMLLLFPAAWASNFFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFS 300
           NWKMLL+ PAAWASNFFY+YQFN+VN  +FNLRTRG NNVFYWGAQM+GSVGIGY++DFS
Sbjct: 239 NWKMLLMVPAAWASNFFYTYQFNHVNAFLFNLRTRGFNNVFYWGAQMVGSVGIGYILDFS 298

Query: 301 FQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFS 360
           FQS + RG VGIG+V L  TAIW GGLA+ L+Y      K LDFK SG+++AGPFVLYFS
Sbjct: 299 FQSRKKRGFVGIGVVGLLATAIWAGGLANHLHYDRTLTHK-LDFKDSGSEYAGPFVLYFS 357

Query: 361 YGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLII 420
           YGLLDAMFQS+VYWVIGALADDSETLSRY GFYKGVQSAG AVAWQ+D H V  LSQLI+
Sbjct: 358 YGLLDAMFQSLVYWVIGALADDSETLSRYIGFYKGVQSAGGAVAWQIDAHNVKKLSQLIV 417

Query: 421 NWSLTTVSYPLLVVLVMLAVKDDDKSKEGTTN----GSDLPSAPTIAGNIAKDYNEP 473
           NW LT+VSYPLL +LVMLAVKD+ K +    +     +  P+A  I G    ++++P
Sbjct: 418 NWVLTSVSYPLLAILVMLAVKDEKKVETKEDDDAFASAKAPTAEEITGG---EFSKP 471

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439025|ref|XP_004137288.1| PREDICTED: UNC93-like protein 1-like [Cucumis sativus]

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/445 (74%), Positives = 377/445 (84%), Gaps = 2/445 (0%)

Query: 1   MGFEGDEEAAAIQISPKYSLFRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPTA 60
           MGF+GDEE++A ++S K S FR+NSPLVQV LIGLVCFCCPGMFNALSGMGGGGQ++   
Sbjct: 1   MGFQGDEESSAPRVSSK-SQFRFNSPLVQVFLIGLVCFCCPGMFNALSGMGGGGQMNTAV 59

Query: 61  ANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVV 120
           A+NA+TALYTTF++FGI+GGGVYNI GPR+TL AGC TYVLYAGSFLYYNH  DQTFA++
Sbjct: 60  ADNASTALYTTFAIFGIIGGGVYNILGPRLTLFAGCITYVLYAGSFLYYNHFKDQTFAII 119

Query: 121 AGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTD 180
           AGA+LG+GAG LWAG+GAIMTSYP   RKGTYIS+FWSIFNMGGVVGGLIPFI+NYHRT 
Sbjct: 120 AGAILGVGAGFLWAGEGAIMTSYPPPGRKGTYISIFWSIFNMGGVVGGLIPFILNYHRTT 179

Query: 181 AESVNDKTYIAFMCFMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFR 240
           A SVND TYI FMCFMS GA +SLAILPPSRV+RDDG+RCTNI YS VS E +EILKLF 
Sbjct: 180 ASSVNDGTYIGFMCFMSIGALISLAILPPSRVVRDDGSRCTNITYSSVSVEFVEILKLFL 239

Query: 241 NWKMLLLFPAAWASNFFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFS 300
           NWKMLL+ PAAW+SNFFY+YQFNNVNG +FNLRTRG NNVFYWGAQM+GSVGIGY++DFS
Sbjct: 240 NWKMLLIVPAAWSSNFFYTYQFNNVNGALFNLRTRGFNNVFYWGAQMVGSVGIGYILDFS 299

Query: 301 FQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFS 360
           F+S RTRGL GI +VAL GT IW GGLA+QL YS  +   +LDFK SG+DF GPF LYF 
Sbjct: 300 FKSRRTRGLFGISLVALLGTGIWAGGLANQLRYSRHNVLDKLDFKDSGSDFVGPFFLYFC 359

Query: 361 YGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLII 420
           +GLLDAMFQSMVYWVIGALADDSETLS     Y         VAWQ+DTH VS +SQL++
Sbjct: 360 FGLLDAMFQSMVYWVIGALADDSETLSSEIILYL-YNDWETKVAWQIDTHHVSFMSQLVV 418

Query: 421 NWSLTTVSYPLLVVLVMLAVKDDDK 445
           NWSLT++SYPLL  LV  AVK+D K
Sbjct: 419 NWSLTSLSYPLLGFLVFFAVKEDKK 443

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394560|ref|NP_564043.1| transmembrane transporter-like protein [Arabidopsis thaliana] gi|18394562|ref|NP_564044.1| transmembrane transporter-like protein [Arabidopsis thaliana] gi|384955520|sp|Q56WD3.2|UN931_ARATH RecName: Full=UNC93-like protein 1 gi|384955526|sp|Q8LG53.2|UN932_ARATH RecName: Full=UNC93-like protein 2 gi|9719716|gb|AAF97818.1|AC034107_1 ESTs gb|AV518228, gb|AV519045, gb|AV524928, gb|AV530358, gb|AV559044 come from this gene [Arabidopsis thaliana] gi|9719717|gb|AAF97819.1|AC034107_2 ESTs gb|AV518228, gb|AV519045, gb|AV524928, gb|AV530358, gb|AV559044 come from this gene [Arabidopsis thaliana] gi|16323169|gb|AAL15319.1| At1g18010/T10F20_2 [Arabidopsis thaliana] gi|25090089|gb|AAN72225.1| At1g18010/T10F20_2 [Arabidopsis thaliana] gi|50253502|gb|AAT71953.1| At1g18000 [Arabidopsis thaliana] gi|51970856|dbj|BAD44120.1| hypothetical protein [Arabidopsis thaliana] gi|332191541|gb|AEE29662.1| transmembrane transporter-like protein [Arabidopsis thaliana] gi|332191542|gb|AEE29663.1| transmembrane transporter-like protein [Arabidopsis thaliana]

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/422 (77%), Positives = 368/422 (87%), Gaps = 1/422 (0%)

Query: 21  FRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPTAANNANTALYTTFSVFGILGG 80
           +R+NSPL QVSL+G VCFCCPGMFNALSGMGGGGQ+DPTAANNANTA+YT F+VFG+LGG
Sbjct: 27  WRFNSPLAQVSLMGFVCFCCPGMFNALSGMGGGGQVDPTAANNANTAVYTAFTVFGLLGG 86

Query: 81  GVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIM 140
           G YN+ GPR+TLAAGCSTYVLYAGSFLYYNHHH Q FA+VAGA+LG GAGLLWAG+GA+M
Sbjct: 87  GFYNVLGPRLTLAAGCSTYVLYAGSFLYYNHHHHQAFAIVAGALLGCGAGLLWAGEGAVM 146

Query: 141 TSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGA 200
           TSYP   RKGTYI+LFWSIFN+GGV+GGLIPFI+NY R+ A SVND TYIAFMCFM AG 
Sbjct: 147 TSYPPPHRKGTYIALFWSIFNLGGVIGGLIPFILNYQRSSAASVNDSTYIAFMCFMFAGV 206

Query: 201 ALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFYSY 260
            LS  ILP + VIR+DG+RC+ +KYS+ STEA  +L+LF + KMLL+ PAAWASNFFYSY
Sbjct: 207 LLSFGILPATSVIRNDGSRCSAVKYSRPSTEAAAVLRLFLDRKMLLIVPAAWASNFFYSY 266

Query: 261 QFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGT 320
           QFNNVNGL+FNLRTRG NNVFYWGAQM GS+ IGYVMDFSF+S R RG  GI +VA+ GT
Sbjct: 267 QFNNVNGLLFNLRTRGFNNVFYWGAQMAGSIAIGYVMDFSFKSRRARGFTGISLVAVIGT 326

Query: 321 AIWGGGLASQLNYSHDD-PPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGAL 379
            IW GGLA+Q  YS D  P K+LDFK SG +FAGPFVLY SYGLLDAM+QSMVYW+IGAL
Sbjct: 327 IIWAGGLANQHGYSLDKLPEKKLDFKDSGIEFAGPFVLYMSYGLLDAMYQSMVYWLIGAL 386

Query: 380 ADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLTTVSYPLLVVLVMLA 439
           ADDS+TLSRY+GFYKGVQSAGAAVAWQVDT KV L+SQLI+NWSLTTVSYPLLV+LV   
Sbjct: 387 ADDSQTLSRYSGFYKGVQSAGAAVAWQVDTRKVPLMSQLIVNWSLTTVSYPLLVLLVYFY 446

Query: 440 VK 441
           VK
Sbjct: 447 VK 448

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844750|ref|XP_002890256.1| hypothetical protein ARALYDRAFT_472014 [Arabidopsis lyrata subsp. lyrata] gi|297336098|gb|EFH66515.1| hypothetical protein ARALYDRAFT_472014 [Arabidopsis lyrata subsp. lyrata]

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/427 (76%), Positives = 371/427 (86%), Gaps = 1/427 (0%)

Query: 16  PKYSLFRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPTAANNANTALYTTFSVF 75
           P    +R+NSP VQVSL+G VCFCCPGMFNALSGMGGGGQ+DPTAANNANTA+YT F+VF
Sbjct: 23  PGNKKWRFNSPFVQVSLMGFVCFCCPGMFNALSGMGGGGQVDPTAANNANTAVYTAFTVF 82

Query: 76  GILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG 135
           G+LGG  YN+ GPR+TLAAGCSTYVLYAGSFLYYNHHH Q FA+VAGA+LG GAGLLWAG
Sbjct: 83  GLLGGAFYNVLGPRLTLAAGCSTYVLYAGSFLYYNHHHHQAFAIVAGALLGCGAGLLWAG 142

Query: 136 QGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCF 195
           +GA+MTSYP   RKGTYI+LFWSIFN+GGV+GGLIPFI+NYHR+ A SVND TYIAFMCF
Sbjct: 143 EGAVMTSYPPPHRKGTYIALFWSIFNLGGVIGGLIPFILNYHRSSAASVNDSTYIAFMCF 202

Query: 196 MSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASN 255
           M AG  LSL ILP + VIR+DG+RC+ +KYS+ STEA  +L+LF + KMLL+ PAAWASN
Sbjct: 203 MFAGVLLSLGILPATSVIRNDGSRCSAVKYSRPSTEAAAVLRLFLDRKMLLIVPAAWASN 262

Query: 256 FFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIV 315
           FFYSYQFNNVNG++FNLRTRG NNVFYWGAQM GS+ IGYVMDFSF+S R RG  GI +V
Sbjct: 263 FFYSYQFNNVNGILFNLRTRGFNNVFYWGAQMAGSIAIGYVMDFSFKSRRARGFAGISLV 322

Query: 316 ALFGTAIWGGGLASQLNYSHDD-PPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYW 374
           A+ GT IW GGLA+Q  YS ++ P K+LDFK SG +FAGPFVLY SYGLLDAM+QSMVYW
Sbjct: 323 AVIGTIIWAGGLANQHGYSLNNLPGKKLDFKDSGIEFAGPFVLYMSYGLLDAMYQSMVYW 382

Query: 375 VIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLTTVSYPLLVV 434
           +IGALADDS+TLSRY+GFYKGVQSAGAAVAWQVDT KV L+SQLI+NWSLTTVSYPLLV+
Sbjct: 383 LIGALADDSQTLSRYSGFYKGVQSAGAAVAWQVDTRKVPLMSQLIVNWSLTTVSYPLLVL 442

Query: 435 LVMLAVK 441
           LV   VK
Sbjct: 443 LVYFYVK 449

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536696|gb|AAM61028.1| unknown [Arabidopsis thaliana]

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/422 (76%), Positives = 367/422 (86%), Gaps = 1/422 (0%)

Query: 21  FRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPTAANNANTALYTTFSVFGILGG 80
           +R+NSPL QVSL+G VCFCCPGMFNALSGMGG GQ+DPTAANNANTA+YT F+VFG+LGG
Sbjct: 27  WRFNSPLAQVSLMGFVCFCCPGMFNALSGMGGSGQVDPTAANNANTAVYTAFTVFGLLGG 86

Query: 81  GVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIM 140
           G YN+ GPR+TLAAGCSTYVLYAGSFLYYNHHH Q FA+VAGA+LG GAGLLWAG+GA+M
Sbjct: 87  GFYNVLGPRLTLAAGCSTYVLYAGSFLYYNHHHHQAFAIVAGALLGCGAGLLWAGEGAVM 146

Query: 141 TSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGA 200
           TSYP   RKGTYI+LFWSIFN+GGV+GGLIPFI+NY R+ A SVND TYIAFMCFM AG 
Sbjct: 147 TSYPPPHRKGTYIALFWSIFNLGGVIGGLIPFILNYQRSSAASVNDSTYIAFMCFMFAGV 206

Query: 201 ALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFYSY 260
            LS  ILP + VIR+DG+RC+ +KYS+ STEA  +L+LF + KMLL+ PAAWASNFFYSY
Sbjct: 207 LLSFGILPATSVIRNDGSRCSAVKYSRPSTEAAAVLRLFLDRKMLLIVPAAWASNFFYSY 266

Query: 261 QFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGT 320
           QFNNVNGL+FNLRTRG NNVFYWGAQM GS+ IGYVMDFSF+S R RG  GI +VA+ GT
Sbjct: 267 QFNNVNGLLFNLRTRGFNNVFYWGAQMAGSIAIGYVMDFSFKSRRARGFTGISLVAVIGT 326

Query: 321 AIWGGGLASQLNYSHDD-PPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGAL 379
            IW GGLA+Q  YS D  P K+LDFK SG +FAGPFVLY SYGLLDAM+QSMVYW+IGAL
Sbjct: 327 IIWAGGLANQHGYSLDKLPEKKLDFKDSGIEFAGPFVLYMSYGLLDAMYQSMVYWLIGAL 386

Query: 380 ADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLTTVSYPLLVVLVMLA 439
           ADDS+TLSRY+GFYKGVQSAGAAVAWQVDT KV L+SQLI+NWSLTTVSYPLLV+LV   
Sbjct: 387 ADDSQTLSRYSGFYKGVQSAGAAVAWQVDTRKVPLMSQLIVNWSLTTVSYPLLVLLVYFY 446

Query: 440 VK 441
           VK
Sbjct: 447 VK 448

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	479
TAIR|locus:505006129	459	AT1G18000 "AT1G18000" [Arabido	0.895	0.934	0.696	1e-164
TAIR|locus:2194030	459	AT1G18010 "AT1G18010" [Arabido	0.895	0.934	0.696	1e-164
CGD|CAL0004428	509	NGT1 [Candida albicans (taxid:	0.889	0.836	0.386	1.4e-80
UNIPROTKB|Q5A7S4	509	NGT1 "Putative uncharacterized	0.889	0.836	0.386	1.4e-80
ASPGD|ASPL0000043316	508	AN1427 [Emericella nidulans (t	0.881	0.830	0.365	5.5e-77
POMBASE|SPAC922.05c	504	SPAC922.05c "membrane transpor	0.922	0.876	0.353	6.5e-74
UNIPROTKB|G4N627	516	MGG_06605 "Uncharacterized pro	0.910	0.844	0.360	2.8e-73
ASPGD|ASPL0000012275	482	AN8127 [Emericella nidulans (t	0.914	0.908	0.342	1.7e-68
POMBASE|SPAC6F6.04c	489	SPAC6F6.04c "membrane transpor	0.860	0.842	0.310	9.8e-48
ASPGD|ASPL0000004084	523	AN6949 [Emericella nidulans (t	0.503	0.460	0.311	1.5e-39

TAIR|locus:505006129 AT1G18000 "AT1G18000" [Arabidopsis thaliana (taxid:3702)]

 Score = 1603 (569.3 bits), Expect = 1.0e-164, P = 1.0e-164
 Identities = 300/431 (69%), Positives = 343/431 (79%)

Query:    15 SPKYSLFRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPXXXXXXXXXXXXXFSV 74
             SP+ + +R+NSPL QVSL+G VCFCCPGMFNALSGMGGGGQ+DP             F+V
Sbjct:    22 SPE-NKWRFNSPLAQVSLMGFVCFCCPGMFNALSGMGGGGQVDPTAANNANTAVYTAFTV 80

Query:    75 FGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFXXXXXXXXXXXXXXXXX 134
             FG+LGGG YN+ GPR+TLAAGCSTYVLYAGSFLYYNHHH Q F                 
Sbjct:    81 FGLLGGGFYNVLGPRLTLAAGCSTYVLYAGSFLYYNHHHHQAFAIVAGALLGCGAGLLWA 140

Query:   135 XXXXIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMC 194
                 +MTSYP   RKGTYI+LFWSIFN+GGV+GGLIPFI+NY R+ A SVND TYIAFMC
Sbjct:   141 GEGAVMTSYPPPHRKGTYIALFWSIFNLGGVIGGLIPFILNYQRSSAASVNDSTYIAFMC 200

Query:   195 FMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWAS 254
             FM AG  LS  ILP + VIR+DG+RC+ +KYS+ STEA  +L+LF + KMLL+ PAAWAS
Sbjct:   201 FMFAGVLLSFGILPATSVIRNDGSRCSAVKYSRPSTEAAAVLRLFLDRKMLLIVPAAWAS 260

Query:   255 NFFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGI 314
             NFFYSYQFNNVNGL+FNLRTRG NNVFYWGAQM GS+ IGYVMDFSF+S R RG  GI +
Sbjct:   261 NFFYSYQFNNVNGLLFNLRTRGFNNVFYWGAQMAGSIAIGYVMDFSFKSRRARGFTGISL 320

Query:   315 VALFGTAIWGGGLASQLNYSHDD-PPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVY 373
             VA+ GT IW GGLA+Q  YS D  P K+LDFK SG +FAGPFVLY SYGLLDAM+QSMVY
Sbjct:   321 VAVIGTIIWAGGLANQHGYSLDKLPEKKLDFKDSGIEFAGPFVLYMSYGLLDAMYQSMVY 380

Query:   374 WVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLTTVSYPLLV 433
             W+IGALADDS+TLSRY+GFYKGVQSAGAAVAWQVDT KV L+SQLI+NWSLTTVSYPLLV
Sbjct:   381 WLIGALADDSQTLSRYSGFYKGVQSAGAAVAWQVDTRKVPLMSQLIVNWSLTTVSYPLLV 440

Query:   434 VLVMLAVKDDD 444
             +LV   VK+D+
Sbjct:   441 LLVYFYVKNDN 451

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2194030 AT1G18010 "AT1G18010" [Arabidopsis thaliana (taxid:3702)]

 Score = 1603 (569.3 bits), Expect = 1.0e-164, P = 1.0e-164
 Identities = 300/431 (69%), Positives = 343/431 (79%)

Query:    15 SPKYSLFRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPXXXXXXXXXXXXXFSV 74
             SP+ + +R+NSPL QVSL+G VCFCCPGMFNALSGMGGGGQ+DP             F+V
Sbjct:    22 SPE-NKWRFNSPLAQVSLMGFVCFCCPGMFNALSGMGGGGQVDPTAANNANTAVYTAFTV 80

Query:    75 FGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFXXXXXXXXXXXXXXXXX 134
             FG+LGGG YN+ GPR+TLAAGCSTYVLYAGSFLYYNHHH Q F                 
Sbjct:    81 FGLLGGGFYNVLGPRLTLAAGCSTYVLYAGSFLYYNHHHHQAFAIVAGALLGCGAGLLWA 140

Query:   135 XXXXIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMC 194
                 +MTSYP   RKGTYI+LFWSIFN+GGV+GGLIPFI+NY R+ A SVND TYIAFMC
Sbjct:   141 GEGAVMTSYPPPHRKGTYIALFWSIFNLGGVIGGLIPFILNYQRSSAASVNDSTYIAFMC 200

Query:   195 FMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWAS 254
             FM AG  LS  ILP + VIR+DG+RC+ +KYS+ STEA  +L+LF + KMLL+ PAAWAS
Sbjct:   201 FMFAGVLLSFGILPATSVIRNDGSRCSAVKYSRPSTEAAAVLRLFLDRKMLLIVPAAWAS 260

Query:   255 NFFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGI 314
             NFFYSYQFNNVNGL+FNLRTRG NNVFYWGAQM GS+ IGYVMDFSF+S R RG  GI +
Sbjct:   261 NFFYSYQFNNVNGLLFNLRTRGFNNVFYWGAQMAGSIAIGYVMDFSFKSRRARGFTGISL 320

Query:   315 VALFGTAIWGGGLASQLNYSHDD-PPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVY 373
             VA+ GT IW GGLA+Q  YS D  P K+LDFK SG +FAGPFVLY SYGLLDAM+QSMVY
Sbjct:   321 VAVIGTIIWAGGLANQHGYSLDKLPEKKLDFKDSGIEFAGPFVLYMSYGLLDAMYQSMVY 380

Query:   374 WVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLTTVSYPLLV 433
             W+IGALADDS+TLSRY+GFYKGVQSAGAAVAWQVDT KV L+SQLI+NWSLTTVSYPLLV
Sbjct:   381 WLIGALADDSQTLSRYSGFYKGVQSAGAAVAWQVDTRKVPLMSQLIVNWSLTTVSYPLLV 440

Query:   434 VLVMLAVKDDD 444
             +LV   VK+D+
Sbjct:   441 LLVYFYVKNDN 451

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

CGD|CAL0004428 NGT1 [Candida albicans (taxid:5476)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 169/437 (38%), Positives = 248/437 (56%)

Query:    13 QISPKYSLFRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPXXXXXXXXXXXXXF 72
             QI+   + FR++S + Q+ L+  V F  PGMFNALSG+G     D              F
Sbjct:    48 QINILGAKFRFSSAMCQIVLLAFVVFLTPGMFNALSGIGAAIS-DKKTADLANTALYVTF 106

Query:    73 SVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFXXXXXXXXXXXXXXX 132
             S  G   G + N+ G +++L  G   Y +YAGS L +NH+ ++ F               
Sbjct:   107 STVGFFAGTICNVIGVKMSLVFGGFGYAIYAGSLLSFNHNENKGFVIFAGAFLGFCASLL 166

Query:   133 XXXXXXIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAF 192
                   I+ SYPT   KG  I +FW IFN+G V+G +IP   N H     S +D T+IAF
Sbjct:   167 WAAQGTIIMSYPTEQTKGRAIMVFWVIFNLGAVIGSIIPLAENMHN-QGSSASDGTFIAF 225

Query:   193 MCFMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILK-LFRNWKMLLLFPAA 251
             +  M  G+ L+  +LP S+V + DGTR     +     E I + + L +  K+LL+FP  
Sbjct:   226 IILMICGSVLANFMLPISKVWKSDGTRVMTKTHPYWKDELIGLGRTLIKEPKILLMFPMF 285

Query:   252 WASNFFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVG 311
             +ASN+FY+YQFNNVN   FNLRTR LN++ YW AQM G++ +GY++DF      TR  +G
Sbjct:   286 FASNWFYTYQFNNVNYGRFNLRTRSLNSLLYWLAQMFGAIVLGYILDFKKFKRSTRAKIG 345

Query:   312 IGIVALFGTAIWGGGLASQLNYSHDD----PPK--RLDFKTSGNDFAGPFVLYFSYGLLD 365
               I+ +   AIWGGGL  Q++++ ++    PPK  +LDFK     + GP  LY  YG+ D
Sbjct:   346 WAILFVTSLAIWGGGLKFQMSFTREEVESKPPKISQLDFKDGA--YIGPMFLYIFYGVFD 403

Query:   366 AMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLT 425
             A+FQ+   WV+GA++++ +  + Y GFYKG+QSAGAA+AW++D+ +V  +S    +W L 
Sbjct:   404 AIFQTYTIWVLGAMSNNPKKTALYAGFYKGIQSAGAAIAWRLDSLEVKYMSLFASSWGLV 463

Query:   426 TVSYPLLVVLVMLAVKD 442
               S  L + L+   +KD
Sbjct:   464 QGSLVLAIPLIFFMIKD 480

GO:0015572 "N-acetylglucosamine transmembrane transporter activity" evidence=ISS;IDA;IMP

GO:0015764 "N-acetylglucosamine transport" evidence=ISS;IMP;IDA

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5A7S4 NGT1 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 169/437 (38%), Positives = 248/437 (56%)

Query:    13 QISPKYSLFRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPXXXXXXXXXXXXXF 72
             QI+   + FR++S + Q+ L+  V F  PGMFNALSG+G     D              F
Sbjct:    48 QINILGAKFRFSSAMCQIVLLAFVVFLTPGMFNALSGIGAAIS-DKKTADLANTALYVTF 106

Query:    73 SVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFXXXXXXXXXXXXXXX 132
             S  G   G + N+ G +++L  G   Y +YAGS L +NH+ ++ F               
Sbjct:   107 STVGFFAGTICNVIGVKMSLVFGGFGYAIYAGSLLSFNHNENKGFVIFAGAFLGFCASLL 166

Query:   133 XXXXXXIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAF 192
                   I+ SYPT   KG  I +FW IFN+G V+G +IP   N H     S +D T+IAF
Sbjct:   167 WAAQGTIIMSYPTEQTKGRAIMVFWVIFNLGAVIGSIIPLAENMHN-QGSSASDGTFIAF 225

Query:   193 MCFMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILK-LFRNWKMLLLFPAA 251
             +  M  G+ L+  +LP S+V + DGTR     +     E I + + L +  K+LL+FP  
Sbjct:   226 IILMICGSVLANFMLPISKVWKSDGTRVMTKTHPYWKDELIGLGRTLIKEPKILLMFPMF 285

Query:   252 WASNFFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVG 311
             +ASN+FY+YQFNNVN   FNLRTR LN++ YW AQM G++ +GY++DF      TR  +G
Sbjct:   286 FASNWFYTYQFNNVNYGRFNLRTRSLNSLLYWLAQMFGAIVLGYILDFKKFKRSTRAKIG 345

Query:   312 IGIVALFGTAIWGGGLASQLNYSHDD----PPK--RLDFKTSGNDFAGPFVLYFSYGLLD 365
               I+ +   AIWGGGL  Q++++ ++    PPK  +LDFK     + GP  LY  YG+ D
Sbjct:   346 WAILFVTSLAIWGGGLKFQMSFTREEVESKPPKISQLDFKDGA--YIGPMFLYIFYGVFD 403

Query:   366 AMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLT 425
             A+FQ+   WV+GA++++ +  + Y GFYKG+QSAGAA+AW++D+ +V  +S    +W L 
Sbjct:   404 AIFQTYTIWVLGAMSNNPKKTALYAGFYKGIQSAGAAIAWRLDSLEVKYMSLFASSWGLV 463

Query:   426 TVSYPLLVVLVMLAVKD 442
               S  L + L+   +KD
Sbjct:   464 QGSLVLAIPLIFFMIKD 480

GO:0005886 "plasma membrane" evidence=IDA

GO:0015572 "N-acetylglucosamine transmembrane transporter activity" evidence=IMP

GO:0015764 "N-acetylglucosamine transport" evidence=IDA

ASPGD|ASPL0000043316 AN1427 [Emericella nidulans (taxid:162425)]

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 157/430 (36%), Positives = 228/430 (53%)

Query:    23 YNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPXXXXXXXXXXXXXFSVFGILGGGV 82
             Y SP  Q+ L+  VCF CPGM+N+++G+GG GQL+              F+V G   G +
Sbjct:    45 YASPQFQLVLVAFVCFLCPGMYNSVNGLGGAGQLNHSDISKSNTATYSTFAVVGFFAGSI 104

Query:    83 YNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFXXXXXXXXXXXXXXXXXXXXXIMTS 142
              N  G R+TL+ G   Y LY  + L YNH ++  F                     +M +
Sbjct:   105 ANRIGLRLTLSFGGFGYTLYVAALLCYNHTYNSGFLIFAGALLGLCAGLLWCAQGAVMMA 164

Query:   143 YPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTD-AESVNDKTYIAFMCFMSAGAA 201
             YP    KG +IS+FW IFN+GGV+GGLIP   N H +D A SVND TYIAFM  M  G  
Sbjct:   165 YPGENEKGKFISIFWVIFNLGGVIGGLIPLGQNIHNSDSAGSVNDGTYIAFMVLMVLGFL 224

Query:   202 LSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILK-LFRNWKMLLLFPAAWASNFFYSY 260
             L+  ++    ++R DGTR   IK     +E + + + L  +W ++  FP   ASN+FYSY
Sbjct:   225 LAWGLVDSKNIVRKDGTRVIAIKNPSWKSELLGLYETLLTDWYIVAFFPMFLASNWFYSY 284

Query:   261 QFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGT 320
              FN +NG  F  R   LN++ YW  QM+G+   G ++D   +SL+      +  V LF  
Sbjct:   285 HFNAINGSYFVPRAAALNSILYWAMQMIGAFCFGLILDL--KSLKRPARAKLVWVLLFTI 342

Query:   321 A--IWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGA 378
                +WGGG A Q  Y+ +   +  D+  SG  + GP  LY  YG  DA FQ+  YW +G 
Sbjct:   343 TMGVWGGGYAFQKTYTRETAGRSKDWNQSG--YIGPMFLYMFYGFYDAAFQTCAYWFMGC 400

Query:   379 LADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLTTVSYPLLVVLVML 438
             L+++S  L+ + GFYKG+QSAGAA+ W +D ++   ++     W +   S  +   ++  
Sbjct:   401 LSNNSRKLANFAGFYKGIQSAGAAITWALDFNETPYMNMFASCWGILCGSLLIASPIIFF 460

Query:   439 AVKDDDKSKE 448
              +KD    +E
Sbjct:   461 KIKDHTDLEE 470

GO:0005737 "cytoplasm" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

POMBASE|SPAC922.05c SPAC922.05c "membrane transporter (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
 Identities = 162/458 (35%), Positives = 250/458 (54%)

Query:    17 KYSLFRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPXXXXXXXXXXXXXFSVFG 76
             ++    Y S L Q  ++  VCF CPGMFNALSG+GGGG+++              F+  G
Sbjct:    50 RFKSLAYGSALTQTIIVSWVCFLCPGMFNALSGLGGGGEVNADVANDANVALYSTFAGLG 109

Query:    77 ILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFXXXXXXXXXXXXXXXXXXX 136
                G + N+ G ++TLA G + Y +Y  S L Y H +++ F                   
Sbjct:   110 FFAGSICNLIGVKLTLAIGGTGYSVYTASLLCYKHVYNRGFVIFGGCYLGLTAGMLWAAQ 169

Query:   137 XXIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFM 196
               ++ SYP    K  YI++FW IFN+G V+G ++P     H +   SV D TY  F+  M
Sbjct:   170 GAVIMSYPREENKARYIAIFWGIFNLGAVIGSIVPLAQTMH-SSVNSVGDGTYAGFIVLM 228

Query:   197 SAGAALSLAILPPSRVIRDDGTRCTNIKYSKV-STEAIEILK-LFRNWKMLLLFPAAWAS 254
             + G+AL+L ++ P + +++DG +  +I+ S     E + +++ L++ + +LLLFP  ++S
Sbjct:   229 AVGSALALFMVSPEKTVKEDG-KFVHIEKSMGWKKELLGLVQTLYKEYWVLLLFPMFFSS 287

Query:   255 NFFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGI 314
             N+F +YQFN+ N   FN+RTR LNN+ YW AQ++GS      +D+   +   R  VG G+
Sbjct:   288 NWFTTYQFNDFNLAYFNIRTRSLNNLLYWFAQIMGSAVAALFLDWQRFNRVIRARVGWGL 347

Query:   315 VALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSG---NDFAGPFVLYFSYGLLDAMFQSM 371
             V +    IWGGGLA QL Y+     +  DF  +      + G   LY  YG+LDA+FQS 
Sbjct:   348 VFVLICVIWGGGLAFQLKYTRKSVAES-DFVVTDFTHRGYTGYAFLYIFYGMLDAIFQSY 406

Query:   372 VYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLTTVSYPL 431
              YW+IG+L++D+  L+ Y GFYK +QSAGAA+ +++DT  +  ++     W+L   S   
Sbjct:   407 AYWIIGSLSNDTNKLAVYMGFYKSLQSAGAAITYRMDTLNIPYMNYFASCWALLCGS--- 463

Query:   432 LVVLVMLAVKDDDKSKEGTTNGSDLPSAPTIAGNIAKD 469
             L+V   +  K   K K  TT G +    P +A  +A D
Sbjct:   464 LIVASPVIWK---KIKL-TTEGIE-DEIPPLANGLAVD 496

GO:0005737 "cytoplasm" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=ISM

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|G4N627 MGG_06605 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
 Identities = 162/449 (36%), Positives = 230/449 (51%)

Query:    23 YNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPXXXXXXXXXXXXXFSVFGILGGGV 82
             Y SP VQ+ ++ +VCF CPGMFNALSG+G GG  +              F+V G   G  
Sbjct:    60 YASPKVQLLVVSMVCFLCPGMFNALSGLGAGGLENDTAQAQANTALYSTFAVVGFFSGTF 119

Query:    83 YNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFXXXXXXXXXXXXXXXXXXXXXIMTS 142
              N  G ++T+A G   Y +Y+ SFL Y H  +  F                     IM S
Sbjct:   120 ANRLGIKLTMAIGGLGYCVYSASFLCYVHTKNIGFVIFAGALLGVCAGLLWCGQGAIMMS 179

Query:   143 YPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAAL 202
             YP  + KG YIS FW IFN+G VVG  IP   N +      V D TY+ F+  M  GA L
Sbjct:   180 YPPESHKGRYISWFWIIFNLGAVVGSFIPLGQNINNYTG-GVTDGTYVGFIVLMLVGALL 238

Query:   203 SLAILPPSRVIRDDGTRCTNIKYSKVSTE--AIEILKLFRNWKMLLLFPAAWASNFFYSY 260
             +L +     VIRDDGT+   +K     +E   +  + +   W ++ LFP  +ASN FY+Y
Sbjct:   239 ALFLCNSGSVIRDDGTKVIGMKNPSWLSEFKGLWSVLIEEPW-IVALFPMFFASNIFYTY 297

Query:   261 QFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGT 320
             Q NN+NG MFN+RTR LN++ YW AQ++G++  GY +DF       R  V +G +     
Sbjct:   298 QLNNMNGAMFNVRTRSLNSLLYWIAQIIGAIIFGYALDFPGVRRSIRARVSLGALTALTF 357

Query:   321 AIWGGGLASQLNYSH-----DDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWV 375
              IWGGG A Q           +  +++D+   G  + GP  L+ +YG  DA++Q+ +YW 
Sbjct:   358 IIWGGGWAFQSKQPSRAVVSSEAHRKIDWTDGGEAYIGPMFLFMAYGFFDAIWQTSIYWY 417

Query:   376 IGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLTTVSYPLLVVL 435
             +GAL++     +   GFYKG+QSAGAAV W++D+  V   +     W +          +
Sbjct:   418 MGALSNSGRKAANLAGFYKGIQSAGAAVFWRLDSLGVEFNTIFGATWGILAACLIFAAPI 477

Query:   436 VMLAVKDD---DKSKEGTTN-GSDLPSAP 460
             + L +KD    D   +GT    SD+  AP
Sbjct:   478 IWLKIKDTVDVDVDLKGTDETASDVVVAP 506

GO:0005737 "cytoplasm" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=ISS

ASPGD|ASPL0000012275 AN8127 [Emericella nidulans (taxid:162425)]

 Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
 Identities = 157/458 (34%), Positives = 237/458 (51%)

Query:    23 YNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPXXXXXXXXXXXXXFSVFGI-LGGG 81
             Y  P  Q+ LI  +CFCCPGM+NAL+G+GG GQ+DP              +   + + G 
Sbjct:    29 YTHPWFQIFLISFICFCCPGMYNALTGLGGSGQVDPTVAANATVALLSATAGTALFVVGP 88

Query:    82 VYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFXXXXXXXXXXXXXXXXXXXXXIMT 141
             +++  GPR+ L  G  TY LYAGS L +N   +  F                     IMT
Sbjct:    89 IFDRVGPRICLLFGGWTYPLYAGSLLCFNRTGNGAFVIASGAILGIGASFLWVSQGAIMT 148

Query:   142 SYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAA 201
             +Y   ++KG  I+ FW IFN+GG VG L  F +NYH T   +V+D TYIA +  M+ G  
Sbjct:   149 TYVRESQKGRAIAAFWIIFNLGGGVGSLASFGLNYHSTSG-TVSDGTYIALLILMAVGWL 207

Query:   202 LSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIE---ILKL----FRNWKMLLLFPAAWAS 254
             L + I PPS V  ++  + +  + + V TE       L+L      +W++L + P  + +
Sbjct:   208 LGMLICPPSAVRLEELQQSSRTQTAVVETEKPNWKSTLRLAARTILDWRVLCMLPLFFCA 267

Query:   255 NFFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGI 314
             N FYSYQ N VNG+ FN+RTR LN+  YW AQMLG + +G ++D    +   R   G   
Sbjct:   268 NVFYSYQQNIVNGMTFNIRTRSLNSALYWLAQMLGGLVMGLILDIPALTRPGRARAGWLF 327

Query:   315 VALFGTAIWGGGLASQLNYSHD----DPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQS 370
             +A+ G AIWGGG A +  +S D       + +D+ T G    GP  LY  YG  DA +QS
Sbjct:   328 LAVTGLAIWGGGYAFE-KWSSDRLAHGLKQDIDY-TQGTVSTGPIFLYIFYGAFDAFWQS 385

Query:   371 MVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLT----T 426
               YW++GA ++D    +   G YK  QS G A+AW+++      ++Q  ++W L      
Sbjct:   386 YCYWLMGARSNDPAVAAVLVGAYKTFQSTGGAMAWRINALDKPAMTQFAMDWGLCMGALV 445

Query:   427 VSYPLLVVLVMLAVKDDDKSKEGTTNGSDLPSAPTIAG 464
             V+ P ++ +   +  D + + +G   G +   + ++ G
Sbjct:   446 VAIPAVLTVTKTSTVDAEVAHQGE-KGEEKTMSASVKG 482

GO:0003674 "molecular_function" evidence=ND

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

POMBASE|SPAC6F6.04c SPAC6F6.04c "membrane transporter (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 132/425 (31%), Positives = 196/425 (46%)

Query:    36 VCFCCPGMFNALSGMG-GGGQLDPXXXXXXXXXXXXX-FSVFGILGGGVYNIFGPRVTLA 93
             + FCCPG++ A++G+G GGG  D               F+V G  GG +    GPR  LA
Sbjct:    34 ILFCCPGIYLAVTGLGAGGGHPDAYHMADVTNSLLYALFTVCGWAGGPILKYLGPRWALA 93

Query:    94 AGCSTYVLYAGSFLYYNHHHDQTFXXXXXXXXXXXXXXXXXXXXXIMTSYPTATRKGTYI 153
              G + Y +Y G   Y+++   Q F                     I  SY  A +K  +I
Sbjct:    94 LGATGYPIYIGGLWYFDNTGKQGFTIFTGAYEGIAAGLLWASTAYISLSYSCANQKSQFI 153

Query:   154 SLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALS-LAILPPSRV 212
             +  W+I   G  VG  I F +NYH T    V    YI F+  M+    L+ L I  PS V
Sbjct:   154 ATQWTILAFGSTVGSFIAFGINYHSTST-GVPMAVYIIFIIIMACAVLLAILFIKSPSDV 212

Query:   213 IRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFYSYQFNNVNGLMFNL 272
              + DGT   +        E   + +  ++W++L L PA++AS    ++Q +++N   F+L
Sbjct:   213 RKSDGTSALSPSNKTFGQELWGLFEAAKDWRLLCLLPASFASQSTIAWQ-SHLNSYYFSL 271

Query:   273 RTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLA---S 329
             RTR LNNV +W  Q         ++D      RTRG++G+ I A+   A   G L    S
Sbjct:   272 RTRSLNNVLFWVIQFFVPYLFTLILDAKALKRRTRGIIGLTIQAVVIMATLSGELGWIVS 331

Query:   330 QLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRY 389
             +    HD  P  LD+   G  + G  VLY   G+        V W I  L+ D +  +RY
Sbjct:   332 KHIDLHDTSPD-LDWTQRG--YGGALVLYLLMGIQYGSSIVSVQWCISLLSSDPDKYARY 388

Query:   390 TGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLTTVSYPLLVVLVMLAVKDDDK--SK 447
              G YKG Q+AG  V++ +D   VS L Q II +    V     +++  +  K+ D+  +K
Sbjct:   389 AGLYKGTQAAGMCVSFGIDAAGVSFLGQGIIYFIFLFVMCASQLIMTSIFGKETDRLSTK 448

Query:   448 EGTTN 452
             E  T+
Sbjct:   449 EHFTD 453

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IC

ASPGD|ASPL0000004084 AN6949 [Emericella nidulans (taxid:162425)]

 Score = 321 (118.1 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
 Identities = 75/241 (31%), Positives = 107/241 (44%)

Query:    23 YNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPXXXXXXXXXXXXXFSVFGILGGGV 82
             Y S L Q+ ++GLV FC PG++ AL+ +G GG   P              SV   L GGV
Sbjct:    10 YRSCLFQIIIVGLVAFCEPGIWTALNNLGAGGNASPFLNNAANALTYGLMSVGCFLAGGV 69

Query:    83 YNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFXXXXXXXXXXXXXXXXXXXXXIMTS 142
              N    + TL  G + Y  YA     +N + ++ F                     I   
Sbjct:    70 SNKITAKWTLFIGAAFYTPYAAGLYCHNRYGNEWFLLLGASLCGIGASLLWASEAAIAVG 129

Query:   143 YPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAAL 202
             YP   ++G Y++++  I  MG +VGG I   +N +      V   TY+  +   S GA  
Sbjct:   130 YPEEDKRGRYVAIWMGIRQMGPLVGGAISLALNVNTAHVGKVTYTTYLGLVAISSLGAPF 189

Query:   203 SLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFYSYQF 262
             +L +  P  V R DGT+   +K + ++ EA  I K  RN  MLLL P   A  F  +YQ 
Sbjct:   190 ALLLSQPQEVFRSDGTKIPYMKKTSLAIEARAIWKQLRNKYMLLLIPVFLAGQFGATYQG 249

Query:   263 N 263
             N
Sbjct:   250 N 250

GO:0003674 "molecular_function" evidence=ND

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LG53	UN932_ARATH	No assigned EC number	0.7701	0.8789	0.9172	yes	no
Q9URX1	YLX5_SCHPO	No assigned EC number	0.3851	0.9415	0.8948	yes	no
Q56WD3	UN931_ARATH	No assigned EC number	0.7701	0.8789	0.9172	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XII.1199.1 hypothetical protein (420 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	479
pfam05978	157	pfam05978, UNC-93, Ion channel regulatory protein	1e-10
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-06
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-06
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-05
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.002

>gnl|CDD|114686 pfam05978, UNC-93, Ion channel regulatory protein UNC-93

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 4/107 (3%)

Query: 68  LYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGI 127
           +Y  F+V  +    V +I  P+  +  G   Y  +   FL+ N      +   + A+LG+
Sbjct: 46  IYFFFTVSCLFAPSVVDILTPKWAMVIGALCYASFQLGFLFLN----SYYLYFSSALLGV 101

Query: 128 GAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIM 174
           GA  LW GQG  +T   T        S+ W+I     + GG+  F +
Sbjct: 102 GAAFLWTGQGQYLTENSTRETIERNTSIQWAIGKSSLIFGGIFLFFV 148

This family of proteins is a component of a multi-subunit protein complex which is involved in the coordination of muscle contraction. UNC-93 is most likely an ion channel regulatory protein. Length = 157

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 57/350 (16%), Positives = 102/350 (29%), Gaps = 34/350 (9%)

Query: 56  LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQ 115
           + PT      TA    +++   L G + + FG R  L  G    +L+A   L        
Sbjct: 29  ISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIG---LLLFALGLLLLLFASSL 85

Query: 116 TFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLI-PFIM 174
              +V   + G+G G L+    A++  +     +G  + L  + F +G  +G L+   + 
Sbjct: 86  WLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLA 145

Query: 175 NYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIE 234
           +     A       ++         A L+  +LP                  +     + 
Sbjct: 146 SLFGWRA------AFLILAILALLAAVLAALLLPRPPPESK-----RPKPAEEAPAPLVP 194

Query: 235 ILKLFRNWKMLLLFPAAWASNFFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIG 294
             KL     +L L  A     F +         L       GL+ +       L  +   
Sbjct: 195 AWKLLLRDPVLWLLLALLLFGFAFFALLTY---LPLYQEVLGLSALLAGLLLGLAGLLGA 251

Query: 295 YVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGP 354
                  +     G     ++AL    +   GLA                 +        
Sbjct: 252 IGRLLLGRLSDRLGRRRRLLLALLLLILAALGLA---------------LLSLTESSLWL 296

Query: 355 FVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVA 404
            V     G    +    +  ++  LA   E     +G Y    S G A+ 
Sbjct: 297 LVALLLLGFGAGLVFPALNALVSDLAPKEER-GTASGLYNTAGSLGGALG 345

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 4/145 (2%)

Query: 27  LVQVSLIGLVCFCCPGMFN-ALSGMGGGGQLDPTAANNANTALYTTFSVFGILGGGVYNI 85
           L+ + L   +     G+ + AL  +     L  + A    +A    +++  +L G + + 
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 86  FGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPT 145
           FG R  L  G    +L+A   L           +V   +LG+G G L+    A++  +  
Sbjct: 61  FGRRRVLLLGL---LLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFP 117

Query: 146 ATRKGTYISLFWSIFNMGGVVGGLI 170
              +G  + LF + F +G ++G L+
Sbjct: 118 PKERGRALGLFSAGFGLGALLGPLL 142

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 32/163 (19%), Positives = 59/163 (36%)

Query: 6   DEEAAAIQISPKYSLFRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPTAANNAN 65
             E A   + P + L   +  L  +  + L  F    +   L        L    A    
Sbjct: 184 PAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLL 243

Query: 66  TALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVL 125
                  ++  +L G + +  G R  L       +L A      +      + +VA  +L
Sbjct: 244 GLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLL 303

Query: 126 GIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGG 168
           G GAGL++    A+++       +GT   L+ +  ++GG +G 
Sbjct: 304 GFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 30/149 (20%), Positives = 51/149 (34%), Gaps = 7/149 (4%)

Query: 27  LVQVSLIGLVCFCCPGMFNALSG-----MGGGGQLDPTAANNANTALYTTFSVFGILGGG 81
           L  + L+ L  F     +  L       +     L    A    +       +  +LGG 
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233

Query: 82  VYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMT 141
           + +  G R  L       +L A   L           +VA  +LG G G  +     + +
Sbjct: 234 LSDRLGRRRLLLLIG--LLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLAS 291

Query: 142 SYPTATRKGTYISLFWSIFNMGGVVGGLI 170
                  +GT   LF +  ++GG +G L+
Sbjct: 292 ELAPPEARGTASGLFNTFGSLGGALGPLL 320

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	479
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.97
KOG0569	485	consensus Permease of the major facilitator superf	99.94
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.93
KOG0254	513	consensus Predicted transporter (major facilitator	99.92
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.92
PRK10642	490	proline/glycine betaine transporter; Provisional	99.91
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.9
PRK12307	426	putative sialic acid transporter; Provisional	99.9
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.9
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.89
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.89
PRK03545	390	putative arabinose transporter; Provisional	99.88
PRK11663	434	regulatory protein UhpC; Provisional	99.88
PRK09705	393	cynX putative cyanate transporter; Provisional	99.88
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.88
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.88
TIGR00891	405	2A0112 putative sialic acid transporter.	99.87
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.87
TIGR00900	365	2A0121 H+ Antiporter protein.	99.87
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.87
TIGR00893	399	2A0114 d-galactonate transporter.	99.87
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.87
TIGR00898	505	2A0119 cation transport protein.	99.87
PRK10489	417	enterobactin exporter EntS; Provisional	99.86
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.86
PRK05122	399	major facilitator superfamily transporter; Provisi	99.86
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.86
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.86
PRK03893	496	putative sialic acid transporter; Provisional	99.85
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.85
PRK09952	438	shikimate transporter; Provisional	99.85
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.85
PRK12382	392	putative transporter; Provisional	99.85
TIGR00895	398	2A0115 benzoate transport.	99.84
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.84
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.84
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.84
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.84
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.84
PRK10504	471	putative transporter; Provisional	99.84
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.84
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.83
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.83
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.83
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.83
PRK15075	434	citrate-proton symporter; Provisional	99.82
KOG2533	495	consensus Permease of the major facilitator superf	99.82
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.82
PRK03633	381	putative MFS family transporter protein; Provision	99.82
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.82
PRK11043	401	putative transporter; Provisional	99.81
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.81
PRK09874	408	drug efflux system protein MdtG; Provisional	99.81
PLN00028	476	nitrate transmembrane transporter; Provisional	99.81
PRK10091	382	MFS transport protein AraJ; Provisional	99.81
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.81
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.81
PRK03699	394	putative transporter; Provisional	99.79
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.79
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.79
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.79
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.78
PRK10133	438	L-fucose transporter; Provisional	99.78
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.78
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.77
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.77
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.77
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.76
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.76
PRK11010	491	ampG muropeptide transporter; Validated	99.76
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.76
TIGR00901	356	2A0125 AmpG-related permease.	99.72
PRK10054	395	putative transporter; Provisional	99.72
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.72
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.72
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.71
KOG2532	466	consensus Permease of the major facilitator superf	99.7
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.69
TIGR00805	633	oat sodium-independent organic anion transporter.	99.68
PRK15011	393	sugar efflux transporter B; Provisional	99.67
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.66
PRK09528	420	lacY galactoside permease; Reviewed	99.66
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.63
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.62
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.62
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.62
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.61
PRK11902	402	ampG muropeptide transporter; Reviewed	99.61
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	99.6
KOG2615	451	consensus Permease of the major facilitator superf	99.6
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.59
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.59
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.59
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.56
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.51
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.51
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.49
KOG3097	390	consensus Predicted membrane protein [Function unk	99.49
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.47
PRK09669	444	putative symporter YagG; Provisional	99.47
PRK10429	473	melibiose:sodium symporter; Provisional	99.46
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.44
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.41
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.39
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.36
PF13347	428	MFS_2: MFS/sugar transport protein	99.33
PTZ00207	591	hypothetical protein; Provisional	99.31
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.28
PRK09848	448	glucuronide transporter; Provisional	99.25
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.24
KOG2563	480	consensus Permease of the major facilitator superf	99.23
COG2211	467	MelB Na+/melibiose symporter and related transport	99.22
PRK11462	460	putative transporter; Provisional	99.18
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.16
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.12
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.11
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.11
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.01
PRK10642	490	proline/glycine betaine transporter; Provisional	99.0
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.99
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.98
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.9
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.9
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.89
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.86
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.81
PRK09874	408	drug efflux system protein MdtG; Provisional	98.72
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.71
PRK05122	399	major facilitator superfamily transporter; Provisi	98.69
PRK15011	393	sugar efflux transporter B; Provisional	98.69
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.68
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.68
PRK10489	417	enterobactin exporter EntS; Provisional	98.67
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.62
PRK09528	420	lacY galactoside permease; Reviewed	98.58
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.57
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.55
PRK10504	471	putative transporter; Provisional	98.53
PRK12382	392	putative transporter; Provisional	98.53
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.51
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.5
PRK12307	426	putative sialic acid transporter; Provisional	98.47
PRK09952	438	shikimate transporter; Provisional	98.47
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.45
KOG3626	735	consensus Organic anion transporter [Secondary met	98.45
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.43
TIGR00898	505	2A0119 cation transport protein.	98.43
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.41
PRK09705	393	cynX putative cyanate transporter; Provisional	98.4
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.39
TIGR00895	398	2A0115 benzoate transport.	98.38
PRK03893	496	putative sialic acid transporter; Provisional	98.37
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.36
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.36
TIGR00893	399	2A0114 d-galactonate transporter.	98.35
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.34
TIGR00891	405	2A0112 putative sialic acid transporter.	98.32
PRK03699	394	putative transporter; Provisional	98.32
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.31
PRK11010	491	ampG muropeptide transporter; Validated	98.31
PRK03545	390	putative arabinose transporter; Provisional	98.31
PRK11663	434	regulatory protein UhpC; Provisional	98.3
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.29
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.28
PRK03633	381	putative MFS family transporter protein; Provision	98.28
TIGR00900	365	2A0121 H+ Antiporter protein.	98.27
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.26
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.24
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.23
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.21
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.19
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.18
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.17
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.15
PRK15075	434	citrate-proton symporter; Provisional	98.15
TIGR00901	356	2A0125 AmpG-related permease.	98.15
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.14
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.12
PF13347	428	MFS_2: MFS/sugar transport protein	98.12
PRK10054	395	putative transporter; Provisional	98.1
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.1
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.08
PRK09848	448	glucuronide transporter; Provisional	98.06
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.05
KOG0569	485	consensus Permease of the major facilitator superf	98.04
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.04
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.04
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.03
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.0
COG2211	467	MelB Na+/melibiose symporter and related transport	97.98
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.98
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.95
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.93
PRK09669	444	putative symporter YagG; Provisional	97.93
PLN00028	476	nitrate transmembrane transporter; Provisional	97.92
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	97.9
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.89
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.88
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	97.87
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.86
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.86
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.85
PRK11902	402	ampG muropeptide transporter; Reviewed	97.82
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.81
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.81
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.8
COG0477	338	ProP Permeases of the major facilitator superfamil	97.79
PRK10429	473	melibiose:sodium symporter; Provisional	97.79
TIGR00896	355	CynX cyanate transporter. This family of proteins	97.78
PRK11043	401	putative transporter; Provisional	97.78
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.78
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.76
KOG2615	451	consensus Permease of the major facilitator superf	97.75
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.73
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.72
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.7
PRK10091	382	MFS transport protein AraJ; Provisional	97.69
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.66
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.65
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.64
KOG3762	618	consensus Predicted transporter [General function	97.63
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.59
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.54
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.54
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.49
TIGR00805	633	oat sodium-independent organic anion transporter.	97.42
PRK10133	438	L-fucose transporter; Provisional	97.4
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.39
PTZ00207	591	hypothetical protein; Provisional	97.37
PRK11462	460	putative transporter; Provisional	97.37
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.35
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.34
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.34
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.34
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.23
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.23
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.17
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.14
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.13
KOG0254	513	consensus Predicted transporter (major facilitator	97.12
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.06
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.02
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.89
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.86
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	96.81
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	96.73
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	96.71
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.62
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	96.57
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	96.22
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	96.22
KOG2533	495	consensus Permease of the major facilitator superf	96.12
KOG2532	466	consensus Permease of the major facilitator superf	95.46
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.39
KOG0637	498	consensus Sucrose transporter and related proteins	95.31
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	95.25
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	95.03
KOG0637	498	consensus Sucrose transporter and related proteins	94.27
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	94.03
KOG3810	433	consensus Micronutrient transporters (folate trans	93.3
KOG2816	463	consensus Predicted transporter ADD1 (major facili	92.37
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	91.78
KOG3762	618	consensus Predicted transporter [General function	91.64
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	91.64
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	91.36
PF12832	77	MFS_1_like: MFS_1 like family	90.67
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	89.95
PF12832	77	MFS_1_like: MFS_1 like family	89.7
KOG3098	461	consensus Uncharacterized conserved protein [Funct	89.55
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	89.3
PRK03612	521	spermidine synthase; Provisional	87.19
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	86.7
KOG2563	480	consensus Permease of the major facilitator superf	85.85
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	83.21

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.97  E-value=2.7e-28  Score=245.61  Aligned_cols=340  Identities=22%  Similarity=0.293  Sum_probs=246.0

Q ss_pred             CCCChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhh
Q 011720           54 GQLDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLW  133 (479)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~  133 (479)
                      +..+++.+..++++.|..+.++|++++++.|+.|.||.|.+|+..|..|..++++.    |.+.++++.++.|+|+++.|
T Consensus        45 g~i~~~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~----N~y~~yfssallG~Gaallw  120 (461)
T KOG3098|consen   45 GGISAYAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP----NSYYLYFSSALLGFGAALLW  120 (461)
T ss_pred             CCcCCCccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc----chHHHHHHHHHhhhhHHhee
Confidence            34567788889999999999999999999999999999999999999999999886    58999999999999999999


Q ss_pred             hhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCccc--ccch-h-----HHHHHHHHHHHHHHHH-
Q 011720          134 AGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAES--VNDK-T-----YIAFMCFMSAGAALSL-  204 (479)
Q Consensus       134 ~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~--~~~~-~-----~~i~~~l~~l~~~l~~-  204 (479)
                      ++++.|++|+++++++.|..++.|.....+.++|+.+.+.+.++.+....  ...+ .     +..+.+..+..++... 
T Consensus       121 ~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~  200 (461)
T KOG3098|consen  121 TGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAIS  200 (461)
T ss_pred             cccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988877655432111  1110 0     1111111111111111 


Q ss_pred             ------hccCCcccccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhhhhhccccccccc-------cc-
Q 011720          205 ------AILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFYSYQFNNVNGL-------MF-  270 (479)
Q Consensus       205 ------~~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~~s~~~~~~~~~-------~f-  270 (479)
                            ....|++.   .....+.. +.++.+++|...+.+++||++++.|.++++++..++..+.++..       .. 
T Consensus       201 ~l~~i~~~~~p~~~---~~~~~~~~-~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n  276 (461)
T KOG3098|consen  201 VLSIINFDFLPSKD---VVNCKSSS-ETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSN  276 (461)
T ss_pred             HHHhhheeecCccc---hhhhhhhc-cccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCc
Confidence                  01111110   00000001 14677888999999999999999999999998666543333221       11 


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHhhhhcccc-ccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCC--CCC-CcccccC
Q 011720          271 NLRTRGLNNVFYWGAQMLGSVGIGYVMDFS-FQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHD--DPP-KRLDFKT  346 (479)
Q Consensus       271 ~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~-~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~  346 (479)
                      +....++..+..++++++++...+.+.||. +.||++...++.....+...++.     ...+++.+  ++. +..++ .
T Consensus       277 ~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~-----l~~p~dap~~~t~~~~~~~-~  350 (461)
T KOG3098|consen  277 TTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIH-----LSFPNDAPLRPTDSPPLLF-T  350 (461)
T ss_pred             chhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHh-----ccccccCCCCCCccccccc-c
Confidence            222346677889999999999999999884 57888877666544322221211     12222221  000 11222 2


Q ss_pred             CCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccC
Q 011720          347 SGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHK  411 (479)
Q Consensus       347 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~  411 (479)
                        +.+....++.++.|+.|+++|++.+++++...  +++|.++++++++.|++++|+.++..+..
T Consensus       351 --~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~--~~~~~~~fsi~kfyq~~~s~v~~f~~~~~  411 (461)
T KOG3098|consen  351 --PSYYLALIIGFLLGFGDACFNTQRYVIIALLY--PDDRAQAFSLFKFYQSVASCVAFFFSPYL  411 (461)
T ss_pred             --cchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence              45778899999999999999999999999999  67789999999999999999998888754

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.94  E-value=4e-26  Score=231.99  Aligned_cols=364  Identities=12%  Similarity=0.071  Sum_probs=231.3

Q ss_pred             hhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhh
Q 011720           61 ANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIM  140 (479)
Q Consensus        61 ~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i  140 (479)
                      -+..++++..+..+|++++++++||+|||.++.++.+..++...........++..+++++|++.|+..|......+.|+
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl  141 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL  141 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            34566778888889999999999999999999999887666333333333457889999999999999999999999999


Q ss_pred             hcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCccc----ccCC
Q 011720          141 TSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRV----IRDD  216 (479)
Q Consensus       141 ~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~----~r~d  216 (479)
                      .|++|++.||....+......+|.++|..++.--....    .-.|.....+..+..+..++.+++.||+|+    +|.|
T Consensus       142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt----~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~  217 (485)
T KOG0569|consen  142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGT----EDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGD  217 (485)
T ss_pred             hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCC----CcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCC
Confidence            99999999999999999999999999877665322211    122432222222222222334566787762    1222


Q ss_pred             C--Cccccc-----c--cCCH---HHHH----------HHHHHHhhch----HHHHHHHHHHHhhhh---hhccccc-cc
Q 011720          217 G--TRCTNI-----K--YSKV---STEA----------IEILKLFRNW----KMLLLFPAAWASNFF---YSYQFNN-VN  266 (479)
Q Consensus       217 ~--~~~~~~-----~--~~~~---~~~~----------~~~~~~~~~~----r~ll~~~~~~~~~~~---~s~~~~~-~~  266 (479)
                      +  ++...+     +  ++..   .++.          ...++.++++    .+.+.+.+.+.+++.   ...+|++ +.
T Consensus       218 ~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~  297 (485)
T KOG0569|consen  218 EEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIF  297 (485)
T ss_pred             HHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHH
Confidence            1  110000     0  0000   0000          0122333322    233333333444431   0011111 11


Q ss_pred             -cccccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCccccc
Q 011720          267 -GLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFK  345 (479)
Q Consensus       267 -~~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (479)
                       ..+++..+....+...++.+++.++++.++.||  .|||++++.+..++.+....+... ...+....        +| 
T Consensus       298 ~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~--~gRRpLll~~~~~~~~~~~~~~~~-~~l~~~~~--------~~-  365 (485)
T KOG0569|consen  298 KTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR--LGRRPLLLISLSLMAVALLLMSIA-LFLSNSFG--------SW-  365 (485)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhh--------hH-
Confidence             345666666788889999999999999999999  789999998877665433333221 11111000        12 


Q ss_pred             CCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccCcchhHHHHHHHHHH
Q 011720          346 TSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLT  425 (479)
Q Consensus       346 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~i~~~~~  425 (479)
                         ..|..+.+++++...+..+-.|..|.+.+|++ |++.|..+.++...++++++.+.-...|.....+..+  .+.++
T Consensus       366 ---~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf-~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~--~filF  439 (485)
T KOG0569|consen  366 ---LSYLCIAAIFLFIISFAIGPGPIPWFIGAELF-PQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPY--VFILF  439 (485)
T ss_pred             ---HHHHHHHHHHHHHHhhhcCCCchhHHHHHHhC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--hhHHH
Confidence               34556777778888888888999999999999 8899999999888888888877766554221111111  22333


Q ss_pred             HhhhhhhheeeeeEeccCCCC
Q 011720          426 TVSYPLLVVLVMLAVKDDDKS  446 (479)
Q Consensus       426 ~~~~~~~~~~v~~~~pet~~~  446 (479)
                      ++.+.....+.|+++|||.+.
T Consensus       440 ~i~~~~~~i~~~~~lPETkgr  460 (485)
T KOG0569|consen  440 VIPLAIFLIYLYRYLPETKGR  460 (485)
T ss_pred             HHHHHHHHHHHHHhCcccCCC
Confidence            344456667889999999643

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.93  E-value=2.2e-24  Score=232.32  Aligned_cols=116  Identities=15%  Similarity=0.232  Sum_probs=99.6

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      ++...+...++.+++..++++++|+++||+|||++++++.+++.++.  .++. .+++.+.++++|++.|+|.|...+..
T Consensus       200 s~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~--ll~a-fa~s~~~llv~R~l~G~g~g~~~p~~  276 (742)
T TIGR01299       200 PDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFA--FFSS-FVQGYGFFLFCRLLSGFGIGGAIPIV  276 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH--HHHH-HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666788889999999999999999999999999988877633  3322 35789999999999999999999999


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      ..+++|++|+++||+.++++.++..+|.+++++++..+.
T Consensus       277 ~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il  315 (742)
T TIGR01299       277 FSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII  315 (742)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988776543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.92  E-value=1.6e-23  Score=220.74  Aligned_cols=361  Identities=13%  Similarity=0.067  Sum_probs=228.0

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhh
Q 011720           62 NNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMT  141 (479)
Q Consensus        62 ~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~  141 (479)
                      +...+..+++.+++++++|+++|++|||++++++.+.+.+  +..+.. .++|.++++++|++.|+|.|......+.|++
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~i--G~ii~~-~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s  168 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLI--GAIIIA-LAPSWYQLIVGRILTGLGVGGASVLAPVYIS  168 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHH-HhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence            5667788888899999999999999999999999999988  444443 4679999999999999999999999999999


Q ss_pred             cCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCccc--cc---CC
Q 011720          142 SYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRV--IR---DD  216 (479)
Q Consensus       142 e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~--~r---~d  216 (479)
                      |++|++.||...+.++....+|..+|.++++.....     .++||.......+..+...+.+++.||++.  .|   .+
T Consensus       169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~-----~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~  243 (513)
T KOG0254|consen  169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV-----YAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLE  243 (513)
T ss_pred             hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC-----CccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChH
Confidence            999999999999999999999999997777655321     146775544444444333334666776642  22   11


Q ss_pred             CCccc---c-c-ccCCHHHHH---H-------------HHHHHh----hchHHHHHHHHHHHhhhh-h---hccccccc-
Q 011720          217 GTRCT---N-I-KYSKVSTEA---I-------------EILKLF----RNWKMLLLFPAAWASNFF-Y---SYQFNNVN-  266 (479)
Q Consensus       217 ~~~~~---~-~-~~~~~~~~~---~-------------~~~~~~----~~~r~ll~~~~~~~~~~~-~---s~~~~~~~-  266 (479)
                      +.+..   . . ++.+...+.   +             ..++.+    .+++..+...+..++++. +   .++...+. 
T Consensus       244 ~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~  323 (513)
T KOG0254|consen  244 EAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFK  323 (513)
T ss_pred             HHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHH
Confidence            11100   0 0 011111111   0             001111    223444455555556551 0   11111111 


Q ss_pred             cccccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccC
Q 011720          267 GLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKT  346 (479)
Q Consensus       267 ~~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (479)
                      ..+++... .......++.++++..+...+.||  +|||++++.|...+.+...++ +....... ...   +   ....
T Consensus       324 ~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~--~gRr~lll~s~~~m~~~~~~~-~~~~~~~~-~~~---~---~~~~  392 (513)
T KOG0254|consen  324 SAGLKSDT-FLASIILGVVNFLGTLVATYLVDR--FGRRKLLLFGAAGMSICLVIL-AVVGVFAL-YYP---N---SSKG  392 (513)
T ss_pred             hcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHH--hccHHHHHHhHHHHHHHHHHH-HHHHHHhc-cCC---C---cccc
Confidence            12222112 456677888889999989999999  789999999987765333222 21111111 100   0   0111


Q ss_pred             CCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccCcchhHHHHHHHHHHH
Q 011720          347 SGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLTT  426 (479)
Q Consensus       347 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~i~~~~~~  426 (479)
                        ..+..+..+.++...+..++.+..|.+.+|++ |.+.|+++.++...+++..+.+.....+............+.+..
T Consensus       393 --~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEif-p~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~  469 (513)
T KOG0254|consen  393 --AGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIF-PLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGG  469 (513)
T ss_pred             --hhHHHHHHHHHHHHHHhcccccchhhhhhccC-cHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence              34566677788888999999998888889999 899999998888877777766664443321111110111222222


Q ss_pred             hhhhhhheeeeeEeccCC
Q 011720          427 VSYPLLVVLVMLAVKDDD  444 (479)
Q Consensus       427 ~~~~~~~~~v~~~~pet~  444 (479)
                      ++.+....++++++|||.
T Consensus       470 ~~~~~~~~fv~~~~pETk  487 (513)
T KOG0254|consen  470 ICLLSLIIFVFFFVPETK  487 (513)
T ss_pred             HHHHHHHHHheEEcccCC
Confidence            222333337889999995

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.92  E-value=1.8e-22  Score=212.24  Aligned_cols=325  Identities=13%  Similarity=0.102  Sum_probs=188.8

Q ss_pred             hhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCc------hhhHHHHHHHHhhhhhhhh
Q 011720           60 AANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHD------QTFAVVAGAVLGIGAGLLW  133 (479)
Q Consensus        60 ~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~------~~~li~~R~i~G~g~g~~~  133 (479)
                      ..+...+....+..++++++|+++||+|||+++.++.+++.+.......   +++      .++++++|++.|++.|...
T Consensus        57 ~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~r~l~G~~~g~~~  133 (502)
T TIGR00887        57 VSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGL---SPGSSPKSVMATLCFWRFWLGVGIGGDY  133 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH---ccCcccchHHHHHHHHHHHHHHHHhhhh
Confidence            4456677777888999999999999999999999998888774332222   222      6789999999999999999


Q ss_pred             hhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCC-----------------cccccchhHHHHHHHH
Q 011720          134 AGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTD-----------------AESVNDKTYIAFMCFM  196 (479)
Q Consensus       134 ~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~-----------------~~~~~~~~~~i~~~l~  196 (479)
                      +..+.+++|++|+++||+.+++++....+|.++|+.++..+......                 ..+++||..+....+.
T Consensus       134 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip  213 (502)
T TIGR00887       134 PLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVP  213 (502)
T ss_pred             HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999887654321000                 0124576544333322


Q ss_pred             HHHHHHHHhccCCccc-----ccCCC-Ccc----------ccccc---------CCHHHHHHHHHHHhhch---HHHH-H
Q 011720          197 SAGAALSLAILPPSRV-----IRDDG-TRC----------TNIKY---------SKVSTEAIEILKLFRNW---KMLL-L  247 (479)
Q Consensus       197 ~l~~~l~~~~~~~~~~-----~r~d~-~~~----------~~~~~---------~~~~~~~~~~~~~~~~~---r~ll-~  247 (479)
                      .+...+..++.||++.     +|+|+ .+.          +.+.+         +..+.++++.++...+|   |..+ .
T Consensus       214 ~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  293 (502)
T TIGR00887       214 ALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGT  293 (502)
T ss_pred             HHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHH
Confidence            2222233445676642     23211 000          00000         00011233443322112   2222 1


Q ss_pred             HHHHHHhhh-hhhcc--ccccc-cccccchhh-----------hH-HHHHHHHHHHHHHHHhhhhccccccCccceeeeh
Q 011720          248 FPAAWASNF-FYSYQ--FNNVN-GLMFNLRTR-----------GL-NNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVG  311 (479)
Q Consensus       248 ~~~~~~~~~-~~s~~--~~~~~-~~~f~~~~~-----------~l-~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g  311 (479)
                      ....+...+ +|+..  .+++. ..+++..+.           .+ ......++.+++.++.+++.||  +|||+..+.+
T Consensus       294 ~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr--~gRR~~l~~~  371 (502)
T TIGR00887       294 AGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDI--IGRKPIQLMG  371 (502)
T ss_pred             HHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcchhHHHHH
Confidence            222222222 12210  12222 112221110           11 1233455667788889999999  7899877666


Q ss_pred             hhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHH
Q 011720          312 IGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTG  391 (479)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~  391 (479)
                      ...+.++. .+..  ...    .        ...   .. .......++..++..++.+..+.+.+|++ |.+.|+++.+
T Consensus       372 ~~~~~~~~-~~l~--~~~----~--------~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~-p~~~R~~~~g  431 (502)
T TIGR00887       372 FFILTVLF-FVLG--FAY----N--------HLS---TH-GFLAIYVLAQFFANFGPNATTFIVPGEVF-PTRYRSTAHG  431 (502)
T ss_pred             HHHHHHHH-HHHH--HHH----H--------hcc---hh-HHHHHHHHHHHHHhcCCCchhhhhhhccC-chhHHHHHHH
Confidence            54432221 1111  110    0        001   11 11111222223334455666777889999 8999999999


Q ss_pred             HHHHHHHHHHHHHhhhcc
Q 011720          392 FYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       392 ~~~~~~~~g~~i~~~~~~  409 (479)
                      +.+.+..++.+++..+.+
T Consensus       432 ~~~~~~~~~~~~~~~~~~  449 (502)
T TIGR00887       432 ISAASGKAGAIIGQFGFL  449 (502)
T ss_pred             HHHHHhhhHHHHHHHHhh
Confidence            999999999988876654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.91  E-value=3e-23  Score=217.57  Aligned_cols=309  Identities=11%  Similarity=0.028  Sum_probs=175.3

Q ss_pred             HHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhh--------HHHHHHHHhhhhhhhhhhh
Q 011720           65 NTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTF--------AVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        65 ~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~--------li~~R~i~G~g~g~~~~~~  136 (479)
                      .++.+.+.++|+++.|+++||+|||+++.++.+++.+.+  .++. .++|+++        +++.|+++|+|.|..++..
T Consensus        63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~--~~~a-~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~  139 (490)
T PRK10642         63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSIST--FCIG-LIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGA  139 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH--HHHH-hcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHH
Confidence            467788899999999999999999999999999988743  3332 4567654        8999999999999999999


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhh-ccC-CcccccchhH-HHHHHHHHHHHHHHHhccCCccc-
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNY-HRT-DAESVNDKTY-IAFMCFMSAGAALSLAILPPSRV-  212 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~-~~~-~~~~~~~~~~-~i~~~l~~l~~~l~~~~~~~~~~-  212 (479)
                      ..+++|++|+++||+..++......+|..+|+.+...+.. ..+ ...+++||.. ++..++.++..+ .....||++. 
T Consensus       140 ~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~-~~~~~~esp~~  218 (490)
T PRK10642        140 SIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLY-LRHALEETPAF  218 (490)
T ss_pred             HHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHH-HHHcCCCChhH
Confidence            9999999999999999999998888888888866543321 000 0013567643 222222222222 2233454432 


Q ss_pred             -ccCCCCcc-ccc-ccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhh-hhh--cccccccc--ccccchhhhHHHHHHHH
Q 011720          213 -IRDDGTRC-TNI-KYSKVSTEAIEILKLFRNWKMLLLFPAAWASNF-FYS--YQFNNVNG--LMFNLRTRGLNNVFYWG  284 (479)
Q Consensus       213 -~r~d~~~~-~~~-~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~-~~s--~~~~~~~~--~~f~~~~~~l~~~~~~i  284 (479)
                       .++++.+. ..+ .++..+..+++.++. ..++++......+.... ++.  ..++++..  .+++..+..+......+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~  297 (490)
T PRK10642        219 QQHVDKLEQGDREGLQDGPKVSFKEIATK-HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMI  297 (490)
T ss_pred             HHHHHhhhhhccccccccccCCHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence             11110000 000 000000112222221 11222222222222221 111  11244432  23444445556667788


Q ss_pred             HHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhh
Q 011720          285 AQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLL  364 (479)
Q Consensus       285 ~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  364 (479)
                      +.+++.++.|++.||  +|||+....+.....+....++   . . .  .           .  .+.....+..++.++.
T Consensus       298 ~~~~~~~~~g~l~dr--~grr~~~~~~~~~~~~~~~~~~---~-~-~--~-----------~--~~~~~~~~~~~~~g~~  355 (490)
T PRK10642        298 GMLFVQPVMGLLSDR--FGRRPFVILGSVALFVLAIPAF---I-L-I--N-----------S--NVIGLIFAGLLMLAVI  355 (490)
T ss_pred             HHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHH---H-H-H--h-----------C--CCHHHHHHHHHHHHHH
Confidence            889999999999999  7899865554432211111111   0 0 0  0           0  1122223333444444


Q ss_pred             HHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHH
Q 011720          365 DAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGA  401 (479)
Q Consensus       365 ~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~  401 (479)
                      .+........++++++ |++.|+++.++.......+.
T Consensus       356 ~~~~~g~~~~~~~~~~-p~~~Rg~~~g~~~~~~~~~g  391 (490)
T PRK10642        356 LNCFTGVMASTLPAMF-PTHIRYSALAAAFNISVLVA  391 (490)
T ss_pred             HHHHHHHHHHHHHHHC-CCccchHHHHHHHHHHHHHH
Confidence            4444455666778899 88999999886433333333

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.90  E-value=1.6e-22  Score=209.76  Aligned_cols=333  Identities=11%  Similarity=0.037  Sum_probs=193.3

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhh
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQG  137 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~  137 (479)
                      ....+...++.+.+..+++++.|+++||+|||+.+.++.+++.+............+.+.++++|++.|+|.+..++...
T Consensus        70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~  149 (481)
T TIGR00879        70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVP  149 (481)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHH
Confidence            44566677888888999999999999999999999999998877433332222234556899999999999999999999


Q ss_pred             hhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchh-HHHHHHHHHHHHHHHHhccCCccc---c
Q 011720          138 AIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKT-YIAFMCFMSAGAALSLAILPPSRV---I  213 (479)
Q Consensus       138 ~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~-~~i~~~l~~l~~~l~~~~~~~~~~---~  213 (479)
                      .++.|+.|+++|++.++++.....+|..+|+.+........   ...+|+. +++ ..+..+..++..++.|+++.   .
T Consensus       150 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~---~~~~w~~~f~~-~~~~~~~~~~~~~~l~~~~~~~~~  225 (481)
T TIGR00879       150 MYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLN---NTLGWRIPLGL-QLIPAGLLFLGLFFLPESPRWLVG  225 (481)
T ss_pred             HHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCC---CCccHHHHHHH-HHHHHHHHHHHHhcCCCChHHHHH
Confidence            99999999999999999999999999999999871111110   1234543 333 22222222233344454331   1


Q ss_pred             cCCCCc--cc-----ccccCCH--HH------------------HHHHHHHHhh--chHHHHHHHHHHHhhhh----hhc
Q 011720          214 RDDGTR--CT-----NIKYSKV--ST------------------EAIEILKLFR--NWKMLLLFPAAWASNFF----YSY  260 (479)
Q Consensus       214 r~d~~~--~~-----~~~~~~~--~~------------------~~~~~~~~~~--~~r~ll~~~~~~~~~~~----~s~  260 (479)
                      +++.++  ..     ..+++..  .+                  ++++.++..+  .++.+....+.......    ..+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (481)
T TIGR00879       226 KGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMY  305 (481)
T ss_pred             cCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHH
Confidence            110000  00     0000000  00                  0011111111  12222222222221110    011


Q ss_pred             cccccc-cccccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCC
Q 011720          261 QFNNVN-GLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPP  339 (479)
Q Consensus       261 ~~~~~~-~~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (479)
                      ..+.+. ..+++..+.++......++.+++.++.+++.||  +|||+....+...+. +.+.+..  ... ....+   +
T Consensus       306 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~--~~~~~~~~~~~~~~~-~~~~~~~--~~~-~~~~~---~  376 (481)
T TIGR00879       306 YSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR--FGRRPLLLIGAAGMA-ICLFVLG--ILG-ASFVT---G  376 (481)
T ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHH-HHHHHHH--HHh-hcccC---C
Confidence            111111 234455555677778888999999999999999  678887666543322 1111111  100 00010   0


Q ss_pred             CcccccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          340 KRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      .  + ..  ..........++.+++..++.+..+.++.+.+ |+++|+++.++.....+++.++.-.+.+
T Consensus       377 ~--~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~lg~~i~~~~~~  440 (481)
T TIGR00879       377 S--S-KS--SGNVAIVFILLFIAFFAMGWGPVPWVIVSEIF-PLSLRPKGISIAVAANWLANFIVGFLFP  440 (481)
T ss_pred             c--c-cc--hhHHHHHHHHHHHHHHHccccCeehhhhhccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0  0 00  12223334444455555566666666778998 7889999999999999988887766543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.90  E-value=6.4e-22  Score=203.58  Aligned_cols=318  Identities=12%  Similarity=-0.008  Sum_probs=184.4

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      ++...+...++...+..+++++.|+++||+|||+++.++.+...+....  +. .+++.+.++++|++.|+|.|...+..
T Consensus        51 s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~--~~-~~~~~~~l~~~r~l~G~g~g~~~~~~  127 (426)
T PRK12307         51 TDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGL--SG-LASGVIMLTLSRFIVGMGMAGEYACA  127 (426)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH--HH-HHhHHHHHHHHHHHHHHHHhhHHHHH
Confidence            3455566777888888999999999999999999999999988773332  22 35689999999999999999988888


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCccc--cc
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRV--IR  214 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~--~r  214 (479)
                      ..++.|+.|+++|+++++++.....+|.++++.+...+..      ..+|+.......+..+..+......|+++.  ++
T Consensus       128 ~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~------~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~  201 (426)
T PRK12307        128 STYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE------AYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEA  201 (426)
T ss_pred             HHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc------cCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHh
Confidence            9999999999999999999999999999999877654421      234543221122111111111111233221  11


Q ss_pred             CCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHH----Hhhh--hhhccccccc-cccccchhhhHHHHHHHHHHH
Q 011720          215 DDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAW----ASNF--FYSYQFNNVN-GLMFNLRTRGLNNVFYWGAQM  287 (479)
Q Consensus       215 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~----~~~~--~~s~~~~~~~-~~~f~~~~~~l~~~~~~i~~~  287 (479)
                      +.+.+. .+++.......++..+.+++|++........    ..+.  .....++.+. ..+++....++.....+++.+
T Consensus       202 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  280 (426)
T PRK12307        202 KLSGKG-KHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTV  280 (426)
T ss_pred             hhhccc-cccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            100000 0000111100011223334444322221111    1110  0111113322 223444555666677888999


Q ss_pred             HHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHH
Q 011720          288 LGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAM  367 (479)
Q Consensus       288 i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  367 (479)
                      ++.++.|++.||  ++||+....+..... +....    ...   ..          .   ........+.+..++...+
T Consensus       281 ~g~~~~g~l~dr--~~~~~~~~~~~~~~~-~~~~~----~~~---~~----------~---~~~~~~~~~~~~~~~~~~~  337 (426)
T PRK12307        281 LGNIVWGLCADR--IGLKKTFSIGLLMSF-LFIFP----LFR---IP----------Q---DNYLLLGACLFGLMATNVG  337 (426)
T ss_pred             HHHHHHHHHHHH--hccHHHHHHHHHHHH-HHHHH----HHH---Hc----------c---ccHHHHHHHHHHHHHhccc
Confidence            999999999999  678876554433221 11111    100   00          0   1111111111222222233


Q ss_pred             HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          368 FQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       368 ~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      ..+..+.++.+.+ |+++|+++.|+.....+++..++..+.
T Consensus       338 ~~~~~~~~~~~~~-p~~~~g~~~g~~~~~~~~~~~~gp~~~  377 (426)
T PRK12307        338 VGGLVPKFLYDYF-PLEVRGLGTGLIYNLAATSGTFNSMAA  377 (426)
T ss_pred             HhHHHHHHHHHhC-cHHHHhhhhhHHHHHHhHHHHHHHHHH
Confidence            3444556678888 788999999999888888887776654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.90  E-value=2.7e-22  Score=209.52  Aligned_cols=331  Identities=12%  Similarity=0.050  Sum_probs=191.5

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhh------c---cCchhhHHHHHHHHhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYN------H---HHDQTFAVVAGAVLGI  127 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~------~---~~~~~~li~~R~i~G~  127 (479)
                      ++...+...+....+..+++++.|+++||+|||++++++.+++.+.........      .   ..+.+.++++|+++|+
T Consensus        53 ~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~  132 (479)
T PRK10077         53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGI  132 (479)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhh
Confidence            344566778888888999999999999999999999999998876433222110      0   1224678999999999


Q ss_pred             hhhhhhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccC--Ccccccchh-HHHHHHHHHHHHHHHH
Q 011720          128 GAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRT--DAESVNDKT-YIAFMCFMSAGAALSL  204 (479)
Q Consensus       128 g~g~~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~--~~~~~~~~~-~~i~~~l~~l~~~l~~  204 (479)
                      +.|...+...++++|+.|+++||+.++++.....+|..++++++..+.....  ....++|+. +++..+..++..+. .
T Consensus       133 ~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~  211 (479)
T PRK10077        133 GVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-L  211 (479)
T ss_pred             hHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-H
Confidence            9999999999999999999999999999999999999998887765532110  012345653 33333333333332 3


Q ss_pred             hccCCcccc-----cCCCCcccc---cccCCHHHHHHHHHHHh-----hchHHHH------H--HHHHHHhhhh-h---h
Q 011720          205 AILPPSRVI-----RDDGTRCTN---IKYSKVSTEAIEILKLF-----RNWKMLL------L--FPAAWASNFF-Y---S  259 (479)
Q Consensus       205 ~~~~~~~~~-----r~d~~~~~~---~~~~~~~~~~~~~~~~~-----~~~r~ll------~--~~~~~~~~~~-~---s  259 (479)
                      ++.||++..     |.|+.+...   ...+..++..++..+..     +.++.+.      .  .....+++.. +   .
T Consensus       212 ~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (479)
T PRK10077        212 YFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVL  291 (479)
T ss_pred             HcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHH
Confidence            445654421     111100000   00011111111111111     0111110      0  0011111110 0   0


Q ss_pred             ccccccc-cccccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCC
Q 011720          260 YQFNNVN-GLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDP  338 (479)
Q Consensus       260 ~~~~~~~-~~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (479)
                      +..+.+. ..+++.....+.....++..++++++.+++.||  +|||+..+.+...+.+....+.   ..  . ..    
T Consensus       292 ~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr--~g~r~~~i~~~~~~~v~~~~l~---~~--~-~~----  359 (479)
T PRK10077        292 YYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK--FGRKPLQIIGALGMAIGMFSLG---TA--F-YT----  359 (479)
T ss_pred             HHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH--hcChHHHHHhHHHHHHHHHHHH---HH--H-hc----
Confidence            1101111 122333334455567788899999999999999  7899887777655432221111   10  0 00    


Q ss_pred             CCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          339 PKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                          + .   ........+.++...+...+.+..+.++.|.+ |+++|+++.++....++++..++..+.|
T Consensus       360 ----~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~g~~~~~~~~p  421 (479)
T PRK10077        360 ----Q-A---PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIF-PNAIRGKALAIAVAAQWIANYFVSWTFP  421 (479)
T ss_pred             ----C-c---ccHHHHHHHHHHHHHHhccccchhHHHhHhhC-ChhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence                0 1   12222222222222333345566778899999 7899999999999999999988755544

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.89  E-value=3.1e-21  Score=197.26  Aligned_cols=312  Identities=19%  Similarity=0.154  Sum_probs=196.8

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      ++...+...+....+..+++++.|+++||+|||+.+.++.++..+...  ... .++|.+.+++.|++.|++.+...+..
T Consensus        48 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~l~G~~~~~~~~~~  124 (406)
T PRK11551         48 DVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSL--ATA-QAWDFPSLLVARLLTGVGLGGALPNL  124 (406)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH--HHH-HhccHHHHHHHHHHHHhhHHHHHHHH
Confidence            455666777778888899999999999999999999999887666322  222 35789999999999999999988888


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCcccccC
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRVIRD  215 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~~r~  215 (479)
                      ..++.|+.|+++|++.+++++....+|..+++.++..+..      ..+|+ .+++..++.++..++..++.||++..++
T Consensus       125 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  198 (406)
T PRK11551        125 IALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG------DAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQ  198 (406)
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------ccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHh
Confidence            8999999999999999999999999999999888754421      23454 2333333333333333344454332111


Q ss_pred             CCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHh--hh--hhhccccccc-cccccchhhhHHHHHHHHHHHHHH
Q 011720          216 DGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWAS--NF--FYSYQFNNVN-GLMFNLRTRGLNNVFYWGAQMLGS  290 (479)
Q Consensus       216 d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~--~~--~~s~~~~~~~-~~~f~~~~~~l~~~~~~i~~~i~~  290 (479)
                      ++.+  .+.++..   .+..++..+.++.+.+....+..  ..  ...+. +.+. ..+++..+.++.....+++.+++.
T Consensus       199 ~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~g~s~~~~~~~~~~~~~~~~~~~  272 (406)
T PRK11551        199 AAGA--GKQRAPV---LRALFGEGRATATLLLWISYFFTLIVLYFLLNWL-PSLLVGQGLSRSQAGLVQIAFNIGGALGS  272 (406)
T ss_pred             ccCc--chhhhhh---HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCChhhhhHHHHHHHHHHHHHH
Confidence            1000  0001111   11112211112222111111111  11  11111 2332 234555566777778889999999


Q ss_pred             HHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHH
Q 011720          291 VGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQS  370 (479)
Q Consensus       291 ~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  370 (479)
                      ++.|++.||  +|||+....+...+. +.+..    +.    +.              ++.....+..++.|+...+.++
T Consensus       273 ~~~g~l~dr--~g~~~~~~~~~~~~~-~~~~~----~~----~~--------------~~~~~~~~~~~~~g~~~~~~~~  327 (406)
T PRK11551        273 LLIGALMDR--LRPRRVVLLIYAGIL-ASLAA----LA----AA--------------PSFAGMLLAGFAAGLFVVGGQS  327 (406)
T ss_pred             HHHHHHHHH--HhHHHHHHHHHHHHH-HHHHH----HH----hc--------------CcHHHHHHHHHHHHHHHHhHHH
Confidence            999999999  678775544332211 11111    10    00              1122334455667777777778


Q ss_pred             HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          371 MVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       371 ~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      ..+.+..+.+ |+++|+++.++.+....++..++..+..
T Consensus       328 ~~~~~~~~~~-p~~~~g~~~g~~~~~~~~g~~~g~~~~g  365 (406)
T PRK11551        328 VLYALAPLFY-PTQVRGTGVGAAVAVGRLGSMAGPLLAG  365 (406)
T ss_pred             HHHHHHHHHc-chhhhhhhhhHHHHhhhHHHHHHhhhHh
Confidence            7788888999 7889999999999999999888877654

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.89  E-value=5.1e-21  Score=189.33  Aligned_cols=340  Identities=16%  Similarity=0.173  Sum_probs=225.6

Q ss_pred             cccchhHHHHHHHHHHhhhhh----hhhhhhcCCCCCCCChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhH
Q 011720           22 RYNSPLVQVSLIGLVCFCCPG----MFNALSGMGGGGQLDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCS   97 (479)
Q Consensus        22 ~~~~~~~~~~~~~~~~f~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~   97 (479)
                      +-++.+..++.+.+..|+...    ...-++.+..+-..+....+...+.+-.+.++++++...+.||+.||+.++....
T Consensus         7 ~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~   86 (394)
T COG2814           7 ARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLA   86 (394)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence            344455566777766666532    1112344444444566677778888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhc
Q 011720           98 TYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYH  177 (479)
Q Consensus        98 ~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~  177 (479)
                      +|.+   +.+..+.++|+++++++|++.|+..|.+|+....+..++.||++|++++++.....+++.++|.-++..+.. 
T Consensus        87 lFi~---~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~-  162 (394)
T COG2814          87 LFIV---SNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ-  162 (394)
T ss_pred             HHHH---HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH-
Confidence            8876   444444689999999999999999999999999999999999999999999999999999988877776642 


Q ss_pred             cCCcccccch-hHHHHHHHHHHHHHHHHhccCCcccccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHH--Hh
Q 011720          178 RTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAW--AS  254 (479)
Q Consensus       178 ~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~--~~  254 (479)
                           .++|| .|++...+..+..+......||+..  + +     +++.    +.++.++.+++|+.+......+  +.
T Consensus       163 -----~~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~--~-~-----~~~~----~~~~~~~~l~~p~v~~~l~~t~l~~~  225 (394)
T COG2814         163 -----LFGWRATFLAIAVLALLALLLLWKLLPPSEI--S-G-----SLPG----PLRTLLRLLRRPGVLLGLLATFLFMT  225 (394)
T ss_pred             -----HhhHHHHHHHHHHHHHHHHHHHHHhCCCccC--C-C-----CCCc----chhHHHHHhcCchHHHHHHHHHHHHc
Confidence                 25675 4555555555555555555662211  0 0     0111    2344556778887766444322  33


Q ss_pred             hh--hhhcccccccc--ccccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhh
Q 011720          255 NF--FYSYQFNNVNG--LMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQ  330 (479)
Q Consensus       255 ~~--~~s~~~~~~~~--~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~  330 (479)
                      +.  .|+|. ..++.  .+++....++....+|++.++|+.++|++.||   +.|+........+. +....    +.  
T Consensus       226 g~F~~ftYi-~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr---~~~~~l~~~~~l~a-~~~l~----l~--  294 (394)
T COG2814         226 GHFALYTYI-RPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR---GPRRALIAALLLLA-LALLA----LT--  294 (394)
T ss_pred             chhhhHHhH-HHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc---cchhHHHHHHHHHH-HHHHH----HH--
Confidence            32  25565 44443  45677788888899999999999999999998   23433332222221 11111    10  


Q ss_pred             cccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhccc
Q 011720          331 LNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTH  410 (479)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~  410 (479)
                        +           ..  .+........+++|+....-......-.++.  .|+.+..+.+++....++|.+.+-.+...
T Consensus       295 --~-----------~~--~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~--~p~~~~~a~sl~~aa~nlgia~GA~lGG~  357 (394)
T COG2814         295 --F-----------TG--ASPALALALLFLWGFAFSPALQGLQTRLARL--APDAADLAGSLNVAAFNLGIALGAALGGL  357 (394)
T ss_pred             --H-----------hc--chHHHHHHHHHHHHHHhhhhhhHHHHHhccc--CCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              0           11  1222333344446666554443222334442  35777899999999999999998777643

>PRK03545 putative arabinose transporter; Provisional

Probab=99.88  E-value=1.7e-20  Score=190.93  Aligned_cols=308  Identities=14%  Similarity=0.092  Sum_probs=194.4

Q ss_pred             CCCCCCChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhh
Q 011720           51 GGGGQLDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAG  130 (479)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g  130 (479)
                      ..+-+.++...+...+.....++++.++.|+++||+|||+.+.++.+++.+...  .+. .++|++.++++|+++|++.+
T Consensus        36 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~--~~~-~~~~~~~l~~~r~~~G~~~~  112 (390)
T PRK03545         36 AQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHV--LSA-LAWNFTVLLISRIGIAFAHA  112 (390)
T ss_pred             HhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH--HHH-HhccHHHHHHHHHHHHHHHH
Confidence            333334556667777778888899999999999999999999999888776332  222 36789999999999999999


Q ss_pred             hhhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCC
Q 011720          131 LLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPP  209 (479)
Q Consensus       131 ~~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~  209 (479)
                      ..++...+++.|+.|+++|++.+|++.....+|..+|+.+...+..      ..+|+ .+++..++.++..++.....|+
T Consensus       113 ~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~------~~gw~~~f~~~~~~~~l~~~~~~~~~~~  186 (390)
T PRK03545        113 IFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ------YLGWRTTFLAIGGGALITLLLLIKLLPL  186 (390)
T ss_pred             HHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH------HhcHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9888888999999999999999999999999999999988775532      13444 3444344333333333333343


Q ss_pred             cccccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHh---hh-hhhcccccccc--ccccchhhhHHHHHHH
Q 011720          210 SRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWAS---NF-FYSYQFNNVNG--LMFNLRTRGLNNVFYW  283 (479)
Q Consensus       210 ~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~---~~-~~s~~~~~~~~--~~f~~~~~~l~~~~~~  283 (479)
                      ++. ++         +.+    .++..+.+++|+++......+..   .+ ..++. ..+..  .+++..+.++.....+
T Consensus       187 ~~~-~~---------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~g~s~~~~~~~~~~~~  251 (390)
T PRK03545        187 LPS-EH---------SGS----LKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYI-EPFVQQVAGLSENFATLLLLLFG  251 (390)
T ss_pred             CCC-CC---------cch----HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCccHHHHHHHHHH
Confidence            221 10         011    12233445566554322221111   11 11221 22221  2345555677777788


Q ss_pred             HHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHh
Q 011720          284 GAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGL  363 (479)
Q Consensus       284 i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  363 (479)
                      ++.+++.++.+++.||  .+||+. ..+...+   ......  ...   .            .  .+........+++|+
T Consensus       252 ~~~~~g~~~~g~l~dr--~~~~~~-~~~~~~~---~~~~~~--l~~---~------------~--~~~~~~~~~~~l~g~  306 (390)
T PRK03545        252 GAGIIGSVLFSRLGNR--HPSGFL-LIAIALL---LVCLLL--LLP---A------------A--NSEWHLSVLSIFWGI  306 (390)
T ss_pred             HHHHHHHHHHHHHhhc--cchhHH-HHHHHHH---HHHHHH--HHH---H------------h--chHHHHHHHHHHHHH
Confidence            8999999999999999  567653 2222111   111110  100   0            0  112233445566677


Q ss_pred             hHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          364 LDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       364 ~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      ......+.....+.+..  +++|+++.+++.....+|..++..+..
T Consensus       307 ~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~G~~~~G  350 (390)
T PRK03545        307 AIMCIGLAMQVKVLKLA--PDATDVAMALFSGIFNIGIGAGALLGN  350 (390)
T ss_pred             HHhcchHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66655555555666666  467899999999988888888877654

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.88  E-value=9.4e-21  Score=195.66  Aligned_cols=321  Identities=15%  Similarity=0.064  Sum_probs=190.9

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      .++...+...+.......+++++.|++.||+|||+.+.++.++..+..  .+.. .+++.+.+++.|++.|++.|..++.
T Consensus        55 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~--~~~~-~~~~~~~l~~~~~l~g~~~g~~~~~  131 (434)
T PRK11663         55 LSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIIN--ILFG-FSSSLWAFALLWVLNAFFQGWGWPV  131 (434)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHH--HHHH-HHhHHHHHHHHHHHHHHHHHccchH
Confidence            445566677778888899999999999999999999999998877632  2222 3578899999999999999998888


Q ss_pred             hhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchh-HHHHHHHHHHHHHHHHhccCCccccc
Q 011720          136 QGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKT-YIAFMCFMSAGAALSLAILPPSRVIR  214 (479)
Q Consensus       136 ~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~-~~i~~~l~~l~~~l~~~~~~~~~~~r  214 (479)
                      ...++.|+.|+++||+.+++++...++|.++|+.+...+..      .++|+. +.+..++.++..++..+..|+++..+
T Consensus       132 ~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~------~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~  205 (434)
T PRK11663        132 CAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL------HYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAM  205 (434)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhc
Confidence            88999999999999999999999999999999988766532      134542 33333333332222233333332111


Q ss_pred             ---C------CCCcccccccCCHHHHHHHHHH--HhhchHHHHHHHHHHHhhhhhhc---ccccccc--ccccchhhhHH
Q 011720          215 ---D------DGTRCTNIKYSKVSTEAIEILK--LFRNWKMLLLFPAAWASNFFYSY---QFNNVNG--LMFNLRTRGLN  278 (479)
Q Consensus       215 ---~------d~~~~~~~~~~~~~~~~~~~~~--~~~~~r~ll~~~~~~~~~~~~s~---~~~~~~~--~~f~~~~~~l~  278 (479)
                         +      +..+...+. +....+.++.++  .+++|++++.....+.....+..   .++.++.  .+++..+.++.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~  284 (434)
T PRK11663        206 GLPSVGEWRHDALELAQQQ-EGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSA  284 (434)
T ss_pred             CCCCcccccccccccchhc-cccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence               0      000000000 000001222222  34566666554433322221111   1133432  24555566777


Q ss_pred             HHHHHHHHHHHHHHhhhhccccccCccceee-ehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHH
Q 011720          279 NVFYWGAQMLGSVGIGYVMDFSFQSLRTRGL-VGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVL  357 (479)
Q Consensus       279 ~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (479)
                      ...++++.+++.++.|++.||..-+||+... .....+  +.....   +.. .  .          .   .........
T Consensus       285 ~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~--~~~~~~---~~~-~--~----------~---~~~~~~~~~  343 (434)
T PRK11663        285 VSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGI--LLSVGS---LWL-M--P----------F---ASYVMQAAC  343 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHH--HHHHHH---HHH-c--c----------c---ccHHHHHHH
Confidence            7778899999999999999994212222211 111111  111111   100 1  1          0   111122223


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          358 YFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       358 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      ++..|++....+....+..++.+ +++.|+++.|+.+....+|.+++..+.
T Consensus       344 ~~~~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~p~~~  393 (434)
T PRK11663        344 FFTIGFFVFGPQMLIGMAAAECS-HKEAAGAATGFVGLFAYLGAALSGYPL  393 (434)
T ss_pred             HHHHHHHHhhHHHHHHHHHHhcc-cHhhHHhHHHHHHHHHHHHHHHhcccH
Confidence            33344443333433455677888 788999999999999988888875543

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.88  E-value=1.3e-20  Score=192.07  Aligned_cols=348  Identities=10%  Similarity=0.002  Sum_probs=203.4

Q ss_pred             CCCCCCCChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhh
Q 011720           50 MGGGGQLDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGA  129 (479)
Q Consensus        50 l~~~~~~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~  129 (479)
                      +.++.+.+....+...+..+.++++++++.|++.||+|||+++..+.+++.+.  ...+. .++|++.++++|+++|+|.
T Consensus        35 i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~--~~~~~-~a~~~~~ll~~r~l~Gig~  111 (393)
T PRK09705         35 LRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVG--ALMRE-LYPQSALLLSSALLGGVGI  111 (393)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHH--HHHHH-HCcchHHHHHHHHHHHhHH
Confidence            33333445667778888899999999999999999999999999999998873  33333 4688999999999999999


Q ss_pred             hhhhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhH-HHHHHHHHHHHHHHHhccC
Q 011720          130 GLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTY-IAFMCFMSAGAALSLAILP  208 (479)
Q Consensus       130 g~~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~-~i~~~l~~l~~~l~~~~~~  208 (479)
                      +..++....++.++.| ++|++.++++.....+|..+|+.+...+..+.     .+|+.. ..+....++..+..++..+
T Consensus       112 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~-----~~w~~~~~~~~~~~~~~~~~~~~~~~  185 (393)
T PRK09705        112 GIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS-----ETWYQTLAWWALPAVVALFAWWWQSA  185 (393)
T ss_pred             HHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9998888889888875 88999999999999999999988876553221     235422 1222222222222222222


Q ss_pred             CcccccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhhhh----hccccccc-cccccchhhhHHHHHHH
Q 011720          209 PSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFY----SYQFNNVN-GLMFNLRTRGLNNVFYW  283 (479)
Q Consensus       209 ~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~~----s~~~~~~~-~~~f~~~~~~l~~~~~~  283 (479)
                      +++.+++  +    + +..       ..+.+++|+.+.+..........+    .+. +.+. ..+++..+.++....++
T Consensus       186 ~~~~~~~--~----~-~~~-------~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l-p~~l~~~g~s~~~ag~~~~~~~  250 (393)
T PRK09705        186 REVASSH--K----T-TTT-------PVRVVFTPRAWTLGVYFGLINGGYASLIAWL-PAFYIEIGASAQYSGSLLALMT  250 (393)
T ss_pred             CCCcccc--C----C-CcC-------CcccccCHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCChhhhhHHHHHHH
Confidence            1111000  0    0 000       012234455443332222222111    111 3332 23455566777777889


Q ss_pred             HHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHh
Q 011720          284 GAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGL  363 (479)
Q Consensus       284 i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  363 (479)
                      ++.+++.++.+++.||  .+||+..+.+..... +....    +..   .+              ......  ..++.|+
T Consensus       251 i~~i~g~~~~g~l~~r--~~~~~~~~~~~~l~~-~~~~~----~~~---~~--------------~~~~~~--~~~l~g~  304 (393)
T PRK09705        251 LGQAAGALLMPAMARH--QDRRKLLMLALVLQL-VGFCG----FIW---LP--------------LQLPVL--WAMVCGL  304 (393)
T ss_pred             HHHHHHHHHHHHHHhh--ccchHHHHHHHHHHH-HHHHH----HHH---cc--------------chHHHH--HHHHHHH
Confidence            9999999999999999  678876555533221 11111    110   11              000111  1223455


Q ss_pred             hHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccCcchhHHHHHHHHHHHhhhhhhheeeeeEeccC
Q 011720          364 LDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLTTVSYPLLVVLVMLAVKDD  443 (479)
Q Consensus       364 ~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~pet  443 (479)
                      ..+...+.......+...+++++++.+++.+....++..++..+..........+...+.+..+..+......+...|||
T Consensus       305 g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (393)
T PRK09705        305 GLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPAR  384 (393)
T ss_pred             hccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence            55555554544444555356778899988888887776666444322111111222333333333333344445677999


Q ss_pred             CCCC
Q 011720          444 DKSK  447 (479)
Q Consensus       444 ~~~~  447 (479)
                      ++.|
T Consensus       385 ~~~~  388 (393)
T PRK09705        385 FPQL  388 (393)
T ss_pred             ccch
Confidence            7443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.88  E-value=4.3e-20  Score=189.38  Aligned_cols=333  Identities=12%  Similarity=-0.016  Sum_probs=194.5

Q ss_pred             cCCCCCCCChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhh
Q 011720           49 GMGGGGQLDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIG  128 (479)
Q Consensus        49 ~l~~~~~~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g  128 (479)
                      .+..+...++...+...++.+.++++++++.|+++||+|||+.+.++.+++.+..  .... .++|.+.++++|++.|++
T Consensus        33 ~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~--~~~~-~~~~~~~l~~~r~l~G~~  109 (412)
T TIGR02332        33 TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAS--TATM-FATGPESLYLLRILVGIA  109 (412)
T ss_pred             hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHH--HHHH-HhcCHHHHHHHHHHHHHH
Confidence            3444434456667778888999999999999999999999999999998887733  3332 467899999999999999


Q ss_pred             hhhhhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhcc
Q 011720          129 AGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAIL  207 (479)
Q Consensus       129 ~g~~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~  207 (479)
                      .+..+++...++.|+.|+++||+.+++++....+|..+|+.++..+..........+|+ .|.+..+..++..++..++.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~  189 (412)
T TIGR02332       110 EAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWL  189 (412)
T ss_pred             HhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhcc
Confidence            99998888889999999999999999999999999999999877654211000123454 34333333333333334444


Q ss_pred             CCccccc----CCCCcc----------cccccC----CHHHHHHHHHHHhhchHHHHHHHHHHHhhhhh---hccccccc
Q 011720          208 PPSRVIR----DDGTRC----------TNIKYS----KVSTEAIEILKLFRNWKMLLLFPAAWASNFFY---SYQFNNVN  266 (479)
Q Consensus       208 ~~~~~~r----~d~~~~----------~~~~~~----~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~~---s~~~~~~~  266 (479)
                      ||++.++    +++.+.          +.+.++    ......+..++..+++.+++.....+.....+   ...++.++
T Consensus       190 ~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l  269 (412)
T TIGR02332       190 DDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIFTPAIMLYTLAYFCLTNTLSAINIWTPQIL  269 (412)
T ss_pred             CCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5443211    000000          000000    00001122334344555554443333222111   11124444


Q ss_pred             cc---cccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCccc
Q 011720          267 GL---MFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLD  343 (479)
Q Consensus       267 ~~---~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (479)
                      ..   +++..+.++......++.+++.++.|++.||  ++||+...........+   .+.  ..  . ..        +
T Consensus       270 ~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr--~~~r~~~~~~~~~~~~~---~~~--~~--~-~~--------~  331 (412)
T TIGR02332       270 QSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR--LKERKHHTALPYLFAAA---GWL--LA--S-AT--------D  331 (412)
T ss_pred             HhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc--cCccHHHHHHHHHHHHH---HHH--HH--H-hc--------C
Confidence            32   2344455677778899999999999999999  56665322111111111   111  10  0 00        0


Q ss_pred             ccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          344 FKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                        +  +......+.  +.+++.....+..+....+.+ ++++|+++.|+.+...++|.+++..+..
T Consensus       332 --~--~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~-~~~~~~~a~g~~~~~~~~g~~~~p~~~g  390 (412)
T TIGR02332       332 --H--NLIQLLGII--MASMGSFSAMAIFWTTPDQSI-SLQARAIAIAVINATGNIGSALSPFLIG  390 (412)
T ss_pred             --C--HHHHHHHHH--HHHHHhhhhhhHHHhhccccc-chHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence              1  111111111  122222122222233334556 7889999999999999999988866554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.88  E-value=3.7e-21  Score=200.53  Aligned_cols=355  Identities=13%  Similarity=0.019  Sum_probs=202.8

Q ss_pred             ccccchhHHHHHHHHHHhhhhhh----h-hhhhcCCCCCCCChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhh
Q 011720           21 FRYNSPLVQVSLIGLVCFCCPGM----F-NALSGMGGGGQLDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAG   95 (479)
Q Consensus        21 ~~~~~~~~~~~~~~~~~f~~~~~----~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig   95 (479)
                      +.|+|.+.+++.+..+.++...+    + .+...+..+-+.+....+...+.++.+++++.++.|+++||+|||+.+.++
T Consensus        21 ~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~  100 (467)
T PRK09556         21 KMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFL  100 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHH
Confidence            45666666666666555543211    0 112222333233455566777788888999999999999999999999888


Q ss_pred             hHHHHHHHHHH--HhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhh
Q 011720           96 CSTYVLYAGSF--LYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFI  173 (479)
Q Consensus        96 ~~~~~i~~~~~--~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~  173 (479)
                      .++..+.....  +....++|.+.+++.|+++|++.+..++....+++|+.|+++||+++|++.....+|.++|+.+...
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~  180 (467)
T PRK09556        101 LILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALW  180 (467)
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHH
Confidence            77665532221  1111357899999999999999999999888999999999999999999999999999999887654


Q ss_pred             hhhccCCcccccchh-HHHHHHHHHHHHHHHHhccCCccc--cc-CCCC----c--ccc--cccCCHHHHHHHH-HH-Hh
Q 011720          174 MNYHRTDAESVNDKT-YIAFMCFMSAGAALSLAILPPSRV--IR-DDGT----R--CTN--IKYSKVSTEAIEI-LK-LF  239 (479)
Q Consensus       174 i~~~~~~~~~~~~~~-~~i~~~l~~l~~~l~~~~~~~~~~--~r-~d~~----~--~~~--~~~~~~~~~~~~~-~~-~~  239 (479)
                      .....   ...+|+. +.+..++.++..++.+++.++++.  +. ++++    .  .+.  .++++.  ..++. .+ .+
T Consensus       181 ~~~~~---~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l  255 (467)
T PRK09556        181 GANYF---FDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDM--TKWQIFVEYVL  255 (467)
T ss_pred             HHHhh---ccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccC--cHHHHHHHHHH
Confidence            32210   0112432 333333333333333333332221  10 0000    0  000  000000  01111 12 45


Q ss_pred             hchHHHHHHHHHHHhhhhh---hcccccccc--ccccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhh
Q 011720          240 RNWKMLLLFPAAWASNFFY---SYQFNNVNG--LMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGI  314 (479)
Q Consensus       240 ~~~r~ll~~~~~~~~~~~~---s~~~~~~~~--~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~  314 (479)
                      ++|+++......+..+..+   ....+.+..  .+++..+.++......++.+++.++.|+++||  ++||+........
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr--~g~r~~~~~~~~~  333 (467)
T PRK09556        256 KNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL--ANGRRALVACIAL  333 (467)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCchHHHHHHH
Confidence            6777766554433332211   111244432  34555666777777888999999999999999  6677644332211


Q ss_pred             hHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHH
Q 011720          315 VALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYK  394 (479)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~  394 (479)
                      .. +...+    ....  .           .   .+.....+..+..|+...+.....+....+.+ |++.|+++.|+.+
T Consensus       334 ~~-~~~~~----~~~~--~-----------~---~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-p~~~~g~a~gi~~  391 (467)
T PRK09556        334 AL-IIFTL----GVYQ--H-----------A---TSEYMYLASLFALGFLVFGPQLLIGVAAVGFV-PKKAIGVANGIKG  391 (467)
T ss_pred             HH-HHHHH----HHHH--h-----------c---CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhc-chhhHHHHHHHHH
Confidence            11 11101    1110  0           0   11122233344455433333333344556888 7889999999999


Q ss_pred             HHHHH-HHHHH
Q 011720          395 GVQSA-GAAVA  404 (479)
Q Consensus       395 ~~~~~-g~~i~  404 (479)
                      ...++ |.+++
T Consensus       392 ~~g~l~g~~~~  402 (467)
T PRK09556        392 TFAYLFGDSFA  402 (467)
T ss_pred             HHHHHHhHHHH
Confidence            88876 53443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.87  E-value=3.6e-20  Score=188.48  Aligned_cols=322  Identities=13%  Similarity=0.054  Sum_probs=190.8

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      .++...+...++......++.++.|+++||+|||+.+.++.++..+.  ..... .+++++.+++.|++.|++.+..++.
T Consensus        44 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~--~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~  120 (405)
T TIGR00891        44 LTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAG--TLACG-FAPGYITMFIARLVIGIGMGGEYGS  120 (405)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--HHHHH-HhccHHHHHHHHHHHHhhhhhhhHH
Confidence            34455666777888889999999999999999999999998877763  22222 3578999999999999999999999


Q ss_pred             hhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCccc--c
Q 011720          136 QGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRV--I  213 (479)
Q Consensus       136 ~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~--~  213 (479)
                      ...++.|+.|+++|++.++++.....+|.++|+.+...+...    .+.+|+......++..+..++.....||++.  +
T Consensus       121 ~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~----~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  196 (405)
T TIGR00891       121 SAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV----WGDGWRALFFISILPIIFALWLRKNIPEAEDWKE  196 (405)
T ss_pred             HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHH
Confidence            999999999999999999999999999999999887765432    1123543222222222212222233344321  1


Q ss_pred             cCCCCccccc-------ccCCHHHHHHH----HHHHhhchH--HHHHHHHHHHhhhhh---hcccccccc--ccccchhh
Q 011720          214 RDDGTRCTNI-------KYSKVSTEAIE----ILKLFRNWK--MLLLFPAAWASNFFY---SYQFNNVNG--LMFNLRTR  275 (479)
Q Consensus       214 r~d~~~~~~~-------~~~~~~~~~~~----~~~~~~~~r--~ll~~~~~~~~~~~~---s~~~~~~~~--~~f~~~~~  275 (479)
                      ++++.+...+       .++..++..++    ..+..++++  +..+.......++..   ...++.+..  .+++..+.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~  276 (405)
T TIGR00891       197 KHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTV  276 (405)
T ss_pred             HhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHH
Confidence            1111000000       00000110111    111111111  111111111111111   111133322  24455566


Q ss_pred             hHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHH
Q 011720          276 GLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPF  355 (479)
Q Consensus       276 ~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (479)
                      ++.....+++.+++.++.+++.||  +|||+....+.....   .....  . . . ..              .......
T Consensus       277 ~~~~~~~~~~~~~g~~~~g~l~dr--~g~~~~~~~~~~~~~---~~~~~--~-~-~-~~--------------~~~~~~~  332 (405)
T TIGR00891       277 ANIVVFSNIGAIVGGCVFGFLGDW--LGRRKAYVCSLLAGQ---LLIIP--V-F-A-IG--------------ANVAVLG  332 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--hCchhhhHHHHHHHH---HHHHH--H-H-H-hC--------------CchHHHH
Confidence            777778899999999999999999  678876554432211   11110  0 0 0 00              1112222


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          356 VLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       356 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      +..++.++......+..+.++.+.. |+++|+++.|+.+...+++..++..+..
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~~g~~~~g  385 (405)
T TIGR00891       333 LGLFFQQMLVQGIWGILPKHLGEYF-PTDQRAAGLGFTYQLGNLGGALAPIIGA  385 (405)
T ss_pred             HHHHHHHHHHccchhhHHHHHhhhC-CcchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence            3323344444444555667788988 7889999999999988888888766553

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.87  E-value=6.4e-26  Score=235.15  Aligned_cols=363  Identities=13%  Similarity=0.134  Sum_probs=216.0

Q ss_pred             hhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccC---chhhHHHHHHHHhhhhhhhhhhh
Q 011720           60 AANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHH---DQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        60 ~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~---~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      ......+..+.+..+|+++.|.++||+|||+++.++.+++.+  +..+.. .++   |.+.+.++|++.|+|.|...+..
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i--~~~~~~-~~~~~~~~~~~~~~R~~~G~~~g~~~~~~  123 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMII--GSILIA-FAPSYNNFWMLLIGRFLIGFGIGGAYVVS  123 (451)
T ss_pred             HHHHHHHHHHhhhccccccccccccccccccccccccccccc--cccccc-ccccccccccccccccccccccccccccc
Confidence            345667788888999999999999999999999999998877  333332 456   89999999999999999999999


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCccc----
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRV----  212 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~----  212 (479)
                      +.|+.|++|+++||+..++++....+|.+++.++........   .++.|+.......+..+..++..++.||+|.    
T Consensus       124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~---~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~  200 (451)
T PF00083_consen  124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS---DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLS  200 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccceecc
Confidence            999999999999999999999999999999988877653221   1245665433333322222333456676642    


Q ss_pred             -ccCCCCcccccc-------cCCHH---HH----------HHHHHHHhh-chHHHHHHHHHHHhhhhh---hcccccccc
Q 011720          213 -IRDDGTRCTNIK-------YSKVS---TE----------AIEILKLFR-NWKMLLLFPAAWASNFFY---SYQFNNVNG  267 (479)
Q Consensus       213 -~r~d~~~~~~~~-------~~~~~---~~----------~~~~~~~~~-~~r~ll~~~~~~~~~~~~---s~~~~~~~~  267 (479)
                       +|.|+++...++       +++.+   ++          +++.++..+ ++++++...+.+.+++..   ...+....-
T Consensus       201 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~  280 (451)
T PF00083_consen  201 KGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIF  280 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccc
Confidence             233322111000       00000   00          111122111 223433333333332211   001111111


Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCC
Q 011720          268 LMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTS  347 (479)
Q Consensus       268 ~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (479)
                      ...+....-+.+...++..+++.++..++.||  +|||+..+.+...+.++...+. . . . ....+.  +   ++   
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~GRr~~~i~~~~~~~~~~~~~~-~-~-~-~~~~~~--~---~~---  346 (451)
T PF00083_consen  281 ENAGISNSFLATLILGLVNFLGTLLAIFLIDR--FGRRKLLIIGLLLMAICSLILG-I-I-F-FLGVSS--S---SW---  346 (451)
T ss_pred             cccccccccccccccccccccccccccccccc--cccccccccccccccccccccc-c-c-c-cccccc--c---cc---
Confidence            11111111234455667777888888899999  7899988887655432221111 0 0 0 101110  0   11   


Q ss_pred             CCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccCcchhHHHHHHHHHHHh
Q 011720          348 GNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLTTV  427 (479)
Q Consensus       348 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~i~~~~~~~  427 (479)
                       .....+.+..++...+..++.+..+.+.+|++ |.+.|+++.++...+.+++.++...+.+......... .....+..
T Consensus       347 -~~~~~i~~~~l~~~~~~~g~~~~~~~~~~Elf-Pt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~-~~~~i~~~  423 (451)
T PF00083_consen  347 -WSILSIVFLALFFAFFSLGWGPLPWIYTAELF-PTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGW-GVFLIFAG  423 (451)
T ss_pred             -cccccceeeeeccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc-ccchhhHH
Confidence             12233344444555666688887888889999 8999999999988888887777766655332111100 11112222


Q ss_pred             hhhhhheeeeeEeccCCC
Q 011720          428 SYPLLVVLVMLAVKDDDK  445 (479)
Q Consensus       428 ~~~~~~~~v~~~~pet~~  445 (479)
                      .+++...++++++|||.+
T Consensus       424 ~~~i~~i~~~~~lpET~g  441 (451)
T PF00083_consen  424 VCLIAIIFVYFFLPETKG  441 (451)
T ss_pred             HHHHHHhheeEEEeeCCC
Confidence            223555678899999963

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.87  E-value=3.7e-20  Score=185.43  Aligned_cols=316  Identities=14%  Similarity=0.074  Sum_probs=200.9

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhc--cCchhhHHHHHHHHhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNH--HHDQTFAVVAGAVLGIGAGLLWA  134 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~--~~~~~~li~~R~i~G~g~g~~~~  134 (479)
                      ++...+...++......+++++.|+++||+|||+.+.++.++..+..........  ..+.+.++++|++.|++.+..++
T Consensus        32 s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  111 (365)
T TIGR00900        32 SASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTP  111 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            3455666777778888899999999999999999999998876553222222111  12789999999999999999999


Q ss_pred             hhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchh-HHHHHHHHHHHHHHHHhccCCcccc
Q 011720          135 GQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKT-YIAFMCFMSAGAALSLAILPPSRVI  213 (479)
Q Consensus       135 ~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~-~~i~~~l~~l~~~l~~~~~~~~~~~  213 (479)
                      +..+++.|+.|+++|++.++++.....+|.++|+.++..+...      .+|+. +++..+..++..++.+++++|++.+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (365)
T TIGR00900       112 AYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT------LGIKWAIWVDAVGFAISALLIVSVRIPELAA  185 (365)
T ss_pred             HHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHhcccccCCC
Confidence            9999999999999999999999999999999999988766422      33442 3222222233323323333333211


Q ss_pred             cCCCCcccccccCCHHHHHHHHHH-HhhchHHHHHHHHHHHhhhhh---h-cccccccc--ccccchhhhHHHHHHHHHH
Q 011720          214 RDDGTRCTNIKYSKVSTEAIEILK-LFRNWKMLLLFPAAWASNFFY---S-YQFNNVNG--LMFNLRTRGLNNVFYWGAQ  286 (479)
Q Consensus       214 r~d~~~~~~~~~~~~~~~~~~~~~-~~~~~r~ll~~~~~~~~~~~~---s-~~~~~~~~--~~f~~~~~~l~~~~~~i~~  286 (479)
                      + ++++    .+++..++.++.++ .+++|+++......+.....+   . ...+.+..  .+.+..+.++.....+++.
T Consensus       186 ~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (365)
T TIGR00900       186 S-EIQA----LSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGA  260 (365)
T ss_pred             c-cccc----cchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            1 1110    01111222222223 335565544433322222111   0 11122222  2345556677777888999


Q ss_pred             HHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHH
Q 011720          287 MLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDA  366 (479)
Q Consensus       287 ~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  366 (479)
                      +++.++.+++.||  .+||+....+.....   .....  ..    +           ..  .+.....+..++.|++.+
T Consensus       261 ~~~~~~~~~l~~~--~~~~~~~~~~~~~~~---~~~~~--~~----~-----------~~--~~~~~~~~~~~~~g~~~~  316 (365)
T TIGR00900       261 LLGALLLGLLGRY--FKRMALMTGAIFVIG---LAILV--VG----L-----------TP--PNFPLFLVLWFAIGVGYG  316 (365)
T ss_pred             HHHHHHHHHHHHH--hchhHHHHHHHHHHH---HHHHH--HH----h-----------hc--hhHHHHHHHHHHHHHHHH
Confidence            9999999999998  567775544432211   11110  10    0           01  113344566677888888


Q ss_pred             HHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          367 MFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       367 ~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      ...+....++.+.. |+++|+++.++++..++++..++..+.
T Consensus       317 ~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~  357 (365)
T TIGR00900       317 PINVPQGTLLQRRV-PAELLGRVFGAQFSLSHAAWPLGLILA  357 (365)
T ss_pred             HHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88887888889998 789999999999999998888876554

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.87  E-value=5.6e-20  Score=193.02  Aligned_cols=352  Identities=14%  Similarity=0.071  Sum_probs=215.1

Q ss_pred             hhHHHHHHHHHHhhhhh----hhhhhhcCCCCCCCChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHH
Q 011720           26 PLVQVSLIGLVCFCCPG----MFNALSGMGGGGQLDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVL  101 (479)
Q Consensus        26 ~~~~~~~~~~~~f~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i  101 (479)
                      +|..+..+++..|+...    ...+...+..+-+.++...+...+.+..+.+++.++.|+++||+|||+.++++.+++.+
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~   83 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL   83 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            44445555544455432    12233444433333455566677777788888889999999999999999999998887


Q ss_pred             HHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhc-CCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCC
Q 011720          102 YAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTS-YPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTD  180 (479)
Q Consensus       102 ~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e-~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~  180 (479)
                        ++..+. .++|.+.++++|+++|+|.+...+.....+.+ ..|+++|++++|++.....+|..+||.++..+..+   
T Consensus        84 --~~~~~~-~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~---  157 (495)
T PRK14995         84 --ASLAAA-FSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH---  157 (495)
T ss_pred             --HHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---
Confidence              344443 46899999999999999999987766666655 45789999999999999999999999998876432   


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHhccCCcccccCCCCc-cc-----------------ccc-cCCH-------------
Q 011720          181 AESVNDKTYIAFMCFMSAGAALSLAILPPSRVIRDDGTR-CT-----------------NIK-YSKV-------------  228 (479)
Q Consensus       181 ~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~~r~d~~~-~~-----------------~~~-~~~~-------------  228 (479)
                       .+|+| .|++...+.++..++..++.|+++.+++++.. ..                 ... ..+.             
T Consensus       158 -~gwr~-~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (495)
T PRK14995        158 -FYWGS-VFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALL  235 (495)
T ss_pred             -CChHH-HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence             23444 34444444455444444555543321111000 00                 000 0000             


Q ss_pred             -----HHHHHH-----HHHHhhchHHHHHHHHHHHhhh-h--hhcccccccc--ccccchhhhHHHHHHHHHHHHHHHHh
Q 011720          229 -----STEAIE-----ILKLFRNWKMLLLFPAAWASNF-F--YSYQFNNVNG--LMFNLRTRGLNNVFYWGAQMLGSVGI  293 (479)
Q Consensus       229 -----~~~~~~-----~~~~~~~~r~ll~~~~~~~~~~-~--~s~~~~~~~~--~~f~~~~~~l~~~~~~i~~~i~~~~~  293 (479)
                           ..|.+.     .++.+++|++.......+.... .  ..+.++.+.+  .+++..+.++.....+++..+++++.
T Consensus       236 l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~  315 (495)
T PRK14995        236 LGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIA  315 (495)
T ss_pred             HHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence                 001000     0133444444333322222211 1  1112233332  34566778888888999999999999


Q ss_pred             hhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHH
Q 011720          294 GYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVY  373 (479)
Q Consensus       294 g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  373 (479)
                      |++.||  +|||+....+..... +....    +..   ..          .+  .+........++.|++.+...+...
T Consensus       316 g~l~~r--~g~~~~~~~g~~~~~-~~~~~----l~~---~~----------~~--~~~~~~~~~~~l~G~g~g~~~~~~~  373 (495)
T PRK14995        316 GILVSR--LGLRLVATGGMALSA-LSFYG----LAM---TD----------FS--TQQWQAWGLMALLGFSAASALLAST  373 (495)
T ss_pred             HHHHHH--cCchHHHHHHHHHHH-HHHHH----HHH---hc----------CC--CchHHHHHHHHHHHHhHHHHHHHHH
Confidence            999999  678775554433221 11111    111   01          01  1223334556677888877776666


Q ss_pred             HHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          374 WVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       374 ~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      ....+.. |+++++.+.+++++.+++|.+++..+.
T Consensus       374 ~~~~~~~-~~~~~g~~~~~~~~~~~lG~~~G~ai~  407 (495)
T PRK14995        374 SAIMAAA-PPEKAAAAGAIETMAYELGAGLGIAIF  407 (495)
T ss_pred             HHHHhcC-CHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            5666666 788899999999999999998886654

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.87  E-value=2.1e-20  Score=188.60  Aligned_cols=325  Identities=16%  Similarity=0.130  Sum_probs=197.0

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      ++...+...++......+++++.|+++||+|||+.+.++.+++.+......   .++|.+.++++|++.|++.+..++..
T Consensus        27 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~  103 (399)
T TIGR00893        27 SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA---FAGAYVSLYILRVLLGAAEAPFFPGI  103 (399)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHH---HHcCHHHHHHHHHHHHHHHHhhhhHH
Confidence            344556677788888899999999999999999999999887776333322   35689999999999999999999999


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCcccc-c
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRVI-R  214 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~~-r  214 (479)
                      ..++.|+.|+++|++.++++.....+|..+|+.+...+...      .+|+ .+.+..++.++..++..++.|+++.+ +
T Consensus       104 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (399)
T TIGR00893       104 ILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH------FSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAK  177 (399)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh------CCchHHHHHHHHHHHHHHHHhhheecCCCCccc
Confidence            99999999999999999999999999999999988765432      2343 23333333333333333333332211 1


Q ss_pred             C-CCCccc----c---c--ccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhhh---hhcccccccc--ccccchhhhHHH
Q 011720          215 D-DGTRCT----N---I--KYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFF---YSYQFNNVNG--LMFNLRTRGLNN  279 (479)
Q Consensus       215 ~-d~~~~~----~---~--~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~---~s~~~~~~~~--~~f~~~~~~l~~  279 (479)
                      . ++++.+    .   +  +++..+++.+...+.+++|+++......+.....   ....++.+..  .+++..+.++..
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (399)
T TIGR00893       178 WLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMA  257 (399)
T ss_pred             cCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHH
Confidence            0 000000    0   0  0000000111233445667665554433332221   1111133322  233445567777


Q ss_pred             HHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHH
Q 011720          280 VFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYF  359 (479)
Q Consensus       280 ~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (479)
                      ...+++.+++.++.|++.||  ++||+................... .....           +..   ..........+
T Consensus       258 ~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------~~~---~~~~~~~~~~~  320 (399)
T TIGR00893       258 SLPGIVGFIGMILGGRLSDL--LLRRGKSLVFARKTAIIAGLVLSL-LMFAT-----------NYV---NIPYAALALVA  320 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HhhcccchhHHHHHHHHHHHHHHH-HHHHh-----------ccc---hhHHHHHHHHH
Confidence            78889999999999999999  567752222111111111111100 00000           001   11122222222


Q ss_pred             HHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          360 SYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       360 ~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                       .+....+..+..+.+..|.. |+++|+++.++.+.+.++|..++..+..
T Consensus       321 -~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~g~~~~~~i~g  368 (399)
T TIGR00893       321 -LGFFGLGAGAIGWALISDNA-PGNIAGLTGGLINSLGNLGGIVGPIVIG  368 (399)
T ss_pred             -HHHhchhhhhHHHHHHHhhc-ChhHHHHHHHHHHHHHHHhhhhhhHHhh
Confidence             33333336777888899999 8889999999999999999988877654

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.87  E-value=4.4e-20  Score=191.69  Aligned_cols=368  Identities=14%  Similarity=0.057  Sum_probs=196.1

Q ss_pred             CCChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhh-ccCchhhHHHHHHHHhhhhhhhh
Q 011720           55 QLDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYN-HHHDQTFAVVAGAVLGIGAGLLW  133 (479)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~-~~~~~~~li~~R~i~G~g~g~~~  133 (479)
                      ..++...+...+......++++++.|+++||+|||+.++++.+++.+......... .+.+.+.+++.|++.|++.|..+
T Consensus        59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~  138 (452)
T PRK11273         59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGW  138 (452)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccc
Confidence            34455667777888888999999999999999999999999988776433322211 12467888999999999999888


Q ss_pred             hhhhhhhhcCCCccchHhHHHHHHHHHHhhh-hhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCccc
Q 011720          134 AGQGAIMTSYPTATRKGTYISLFWSIFNMGG-VVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRV  212 (479)
Q Consensus       134 ~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~-~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~  212 (479)
                      +.....+.|+.|+++||+.++++....++|. ..++.+...+...    .+|++ .+++..++.++..++.+++.|+++.
T Consensus       139 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~----~gw~~-~f~i~~~~~~~~~~l~~~~~~~~~~  213 (452)
T PRK11273        139 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF----NDWHA-ALYMPAFAAILVALFAFAMMRDTPQ  213 (452)
T ss_pred             hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh----ccHHH-HHHHHHHHHHHHHHHHHHHccCCHh
Confidence            7777888899999999999999998888886 4555544333221    12333 3333333344433333444443321


Q ss_pred             c--cCCCC--c----ccccccCCHHHHHHHHH--HHhhchHHHHHHHHHHHhhh-h--hhcccccccc--ccccchhhhH
Q 011720          213 I--RDDGT--R----CTNIKYSKVSTEAIEIL--KLFRNWKMLLLFPAAWASNF-F--YSYQFNNVNG--LMFNLRTRGL  277 (479)
Q Consensus       213 ~--r~d~~--~----~~~~~~~~~~~~~~~~~--~~~~~~r~ll~~~~~~~~~~-~--~s~~~~~~~~--~~f~~~~~~l  277 (479)
                      +  ++++.  +    .+.+.++..+.+.++.+  ..+++|++++.....+.... .  ....++.+..  .+++..+.+.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~  293 (452)
T PRK11273        214 SCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSW  293 (452)
T ss_pred             hcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            1  00000  0    00000000000112211  23456666554433322221 1  1112244443  2355556666


Q ss_pred             HHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHH
Q 011720          278 NNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVL  357 (479)
Q Consensus       278 ~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (479)
                      ....+.++.+++.++.|++.||.+-+||......  .+........  .+.. .  .           .  .........
T Consensus       294 ~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~--~~~l~~~~~~--~~~~-~--~-----------~--~~~~~~~~~  353 (452)
T PRK11273        294 AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVF--FMTLVTIATI--VYWL-N--P-----------A--GNPTVDMAC  353 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHH--HHHHHHHHHH--HHHH-h--c-----------c--cChHHHHHH
Confidence            6677888999999999999999422444321111  1110011110  0100 0  0           0  111111222


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHH-HhhhcccCcchhHHHHHHHHHHHhhhhhhheee
Q 011720          358 YFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAV-AWQVDTHKVSLLSQLIINWSLTTVSYPLLVVLV  436 (479)
Q Consensus       358 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v  436 (479)
                      .+..|............+..+.+ |++.|+++.|+.++...+|..+ +..+.........+....+.+..++++..+..+
T Consensus       354 ~~~~g~~~~~~~~~~~~~~~~~~-p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        354 MIVIGFLIYGPVMLIGLHALELA-PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHc-ChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            22333322222222344566888 7889999999998887776544 333332111111111112222222333344445


Q ss_pred             eeEeccCCCCCC
Q 011720          437 MLAVKDDDKSKE  448 (479)
Q Consensus       437 ~~~~pet~~~~~  448 (479)
                      ++..+|+.++||
T Consensus       433 ~~~~~~~~~~~~  444 (452)
T PRK11273        433 VVMIGEKRHHEE  444 (452)
T ss_pred             HHhccccchHHH
Confidence            566678764444

>TIGR00898 2A0119 cation transport protein

Probab=99.87  E-value=3.6e-20  Score=194.99  Aligned_cols=314  Identities=13%  Similarity=0.044  Sum_probs=190.6

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhh
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQG  137 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~  137 (479)
                      +...+...++.+.+..+++++.|+++||+|||+.++++.++..+..  .... .++|++.+++.|++.|++.+...+...
T Consensus       126 ~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~--~~~~-~~~~~~~~~~~r~l~G~~~~~~~~~~~  202 (505)
T TIGR00898       126 AWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSG--VLTA-FSPNYTVFLVFRLLVGMGIGGIWVQAV  202 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHH--HHHH-HcccHHHHHHHHHHHHhhccchHHHHH
Confidence            4456677888889999999999999999999999999988777632  2222 468899999999999999999999999


Q ss_pred             hhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCccc-----
Q 011720          138 AIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRV-----  212 (479)
Q Consensus       138 ~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~-----  212 (479)
                      .++.|+.|+++|++..+++.....+|.++++.+++.+.       +|+| .+++..+..++..+. .++.||++.     
T Consensus       203 ~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-------~wr~-~~~~~~i~~~~~~~~-~~~~~esp~~l~~~  273 (505)
T TIGR00898       203 VLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP-------DWRW-LQLAVSLPTFLFFLL-SWFVPESPRWLISQ  273 (505)
T ss_pred             HHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-------HHHH-HHHHHHHHHHHHHHH-HHhcCCChHHHHHC
Confidence            99999999999999999999999999999998876542       1322 233333333333333 345565431     


Q ss_pred             ccCCCCcccc-------ccc-------CCHHHH---H---HHHHHHhhchHHHHHHHHHHHhhh--hhhcc-cccccccc
Q 011720          213 IRDDGTRCTN-------IKY-------SKVSTE---A---IEILKLFRNWKMLLLFPAAWASNF--FYSYQ-FNNVNGLM  269 (479)
Q Consensus       213 ~r~d~~~~~~-------~~~-------~~~~~~---~---~~~~~~~~~~r~ll~~~~~~~~~~--~~s~~-~~~~~~~~  269 (479)
                      +|.++++...       ..+       ....++   .   ....+.+++|+++..........+  ...++ ...+.. .
T Consensus       274 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  352 (505)
T TIGR00898       274 GRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLG-N  352 (505)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhcccc-c
Confidence            1111100000       000       000000   0   012233445544333222211111  01111 011111 0


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCC
Q 011720          270 FNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGN  349 (479)
Q Consensus       270 f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (479)
                      +.. ...+.....++..+++.++.+++.||  +|||+....+.....+.. .+    +..   .+           .  .
T Consensus       353 ~~~-~~~~~~~~~~~~~i~~~~~~~~l~dr--~grr~~~~~~~~~~~~~~-l~----~~~---~~-----------~--~  408 (505)
T TIGR00898       353 LGG-NIYLDLFISGLVELPAKLITLLLIDR--LGRRYTMAASLLLAGVAL-LL----LLF---VP-----------V--D  408 (505)
T ss_pred             cCC-ChHHHHHHHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHH-HH----HHH---cC-----------C--C
Confidence            111 12234455678888999999999999  789987665543322111 11    111   01           0  1


Q ss_pred             CchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          350 DFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       350 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      .........++.+++.....+..+.+..|++ |.+.|+++.|+.+....+|..++..+..
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~ig~~i~p~i~~  467 (505)
T TIGR00898       409 LYFLRTALAVLGKFGITSAFQMVYLYTAELY-PTVVRNLGVGVCSTMARVGSIISPFLVY  467 (505)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence            1122233334444555555566788889999 8899999999999999998888766543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.86  E-value=1.5e-19  Score=185.59  Aligned_cols=313  Identities=11%  Similarity=-0.007  Sum_probs=191.1

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHh--hhccCchhhHHHHHHHHhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLY--YNHHHDQTFAVVAGAVLGIGAGLLWA  134 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~--~~~~~~~~~li~~R~i~G~g~g~~~~  134 (479)
                      ++...+...+.......+++++.|+++||+|||+.+.++.++..+.......  ...+++++.+++.|++.|++.+...+
T Consensus        50 s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~  129 (417)
T PRK10489         50 STLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVT  129 (417)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            3445666677777888889999999999999999999887765542222111  11245678899999999999998888


Q ss_pred             hhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCccccc
Q 011720          135 GQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRVIR  214 (479)
Q Consensus       135 ~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~~r  214 (479)
                      +...++.|+.|+++|++..++.....++|..+|+.++..+...    .+++|. +.+..+..++..++ .+..|+.+.++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~----~~~~~~-~~~~~~~~~~~~~~-~~~l~~~~~~~  203 (417)
T PRK10489        130 ALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA----GGVAWN-YGLAAAGTFITLLP-LLRLPALPPPP  203 (417)
T ss_pred             HHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH----HhhHHH-HHHHHHHHHHHHHH-HHhCCCCCCCC
Confidence            8888899999999999999999999999999999988765321    123343 22222222232222 23334322111


Q ss_pred             CCCCcccccccCCHHHHHHHHHH-HhhchHHHHHHHHHHHhhhh--hhcccccccc--ccccchhhhHHHHHHHHHHHHH
Q 011720          215 DDGTRCTNIKYSKVSTEAIEILK-LFRNWKMLLLFPAAWASNFF--YSYQFNNVNG--LMFNLRTRGLNNVFYWGAQMLG  289 (479)
Q Consensus       215 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~r~ll~~~~~~~~~~~--~s~~~~~~~~--~~f~~~~~~l~~~~~~i~~~i~  289 (479)
                      ++       +++. .++.++.++ .+++|+++......+.....  +...++.+..  .+.+....++.....+++.+++
T Consensus       204 ~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig  275 (417)
T PRK10489        204 QP-------REHP-LRSLLAGFRFLLASPVVGGIALLGGLLTMASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALG  275 (417)
T ss_pred             cc-------cccc-hHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHH
Confidence            10       0111 122222222 33455443322221111111  1111133332  2345556677777888999999


Q ss_pred             HHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHH
Q 011720          290 SVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQ  369 (479)
Q Consensus       290 ~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  369 (479)
                      .++.+++.||  .++++....+..... +....    +.    .            .  ++........+++|++.+...
T Consensus       276 ~~~~~~l~~~--~~~~~~l~~~~~~~~-~~~~~----~~----~------------~--~~~~~~~~~~~~~g~~~~~~~  330 (417)
T PRK10489        276 ALTSGWLAHS--ARPGLLMLLSTLGSF-LAVGL----FG----L------------M--PMWILAVLCLALFGYLSAISS  330 (417)
T ss_pred             HHHHHHhhhc--cCcchHHHHHHHHHH-HHHHH----HH----c------------c--chHHHHHHHHHHHHHHHHHHH
Confidence            9999999887  334443333322211 11111    10    0            1  222334455666777777776


Q ss_pred             HHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          370 SMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       370 ~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      +..+.++.+.. |++.|+++.|+++..+++|..++..+..
T Consensus       331 ~~~~~~~~~~~-p~~~~g~~~g~~~~~~~~g~~~g~~l~G  369 (417)
T PRK10489        331 LLQYTLLQTQT-PDEMLGRINGLWTAQNVTGDAIGAALLG  369 (417)
T ss_pred             HHHHHHHHhhC-CHHHHHHHHHHHHHHHhhhHhHHHHHHH
Confidence            76667788888 7788999999999999988888877664

>TIGR00897 2A0118 polyol permease family

Probab=99.86  E-value=2.9e-19  Score=182.69  Aligned_cols=318  Identities=15%  Similarity=0.128  Sum_probs=187.8

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhc-cCchhhHHHHHHHHhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNH-HHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~-~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      ++...+...+.......+++++.|++.||+|||+.+..+.+++.+.......... .++.+.+++.|++.|+|.+...+.
T Consensus        46 s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~  125 (402)
T TIGR00897        46 SPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYS  125 (402)
T ss_pred             CHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhH
Confidence            4555666677778888999999999999999999999999887764333221112 357888899999999999887777


Q ss_pred             hhhhhhcCCCccchHhHHHHHHHHHHhhh-hhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCcccc
Q 011720          136 QGAIMTSYPTATRKGTYISLFWSIFNMGG-VVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRVI  213 (479)
Q Consensus       136 ~~~~i~e~~~~~~RG~~~g~~~~~~~~G~-~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~~  213 (479)
                      ...++.+..|+++||+++|++....++|. ++|+.++..+..      ..+|. .++....+..+..++.+++.++++..
T Consensus       126 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (402)
T TIGR00897       126 FLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIP------AFGEMNTLWSALAFVLTGGVIALFSNKDIFTP  199 (402)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------ccchHHHHHHHHHHHHHHHHHHHhccCCCCCc
Confidence            67778898999999999999999999996 578877644321      12221 11111122222233333333322111


Q ss_pred             cCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhhh-h--hcccccccc-ccccchhhhHHHHHHHHHHHHH
Q 011720          214 RDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFF-Y--SYQFNNVNG-LMFNLRTRGLNNVFYWGAQMLG  289 (479)
Q Consensus       214 r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~-~--s~~~~~~~~-~~f~~~~~~l~~~~~~i~~~i~  289 (479)
                      ++.+      ++++..+..+...+.+++|++++.....+..... +  ....+.+.. .+++..+.++.....+++.+++
T Consensus       200 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig  273 (402)
T TIGR00897       200 QHMQ------TREKFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVF  273 (402)
T ss_pred             cccc------CCcchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Confidence            1000      0011111112222345677766554433322221 1  111133332 2345555566666778899999


Q ss_pred             HHHhhhhccccccCccceeee-hhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHH
Q 011720          290 SVGIGYVMDFSFQSLRTRGLV-GIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMF  368 (479)
Q Consensus       290 ~~~~g~l~Dr~~~gRr~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  368 (479)
                      ++..|++.||  ++||+.... +...+.+....+.   . .    +        ....  ..........+++|++.+..
T Consensus       274 ~~~~g~l~dr--~~~~~~~~~~~~l~~~~~~~~l~---~-~----~--------~~~~--~~~~~~~~~~~~~G~~~~~~  333 (402)
T TIGR00897       274 NVIFGIVGDK--LGWMNTVRWFGGVGCGIFTLALY---Y-I----P--------QHFG--HSFAVALIIAIALGIFLAGY  333 (402)
T ss_pred             HHHHHHHHHh--hcchhHHHHHHHHHHHHHHHHHH---H-H----H--------HccC--CcHHHHHHHHHHHHHHHHHH
Confidence            9999999999  667765431 1111111111111   0 0    0        0011  12333445566677777766


Q ss_pred             HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          369 QSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       369 ~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      .+ ......+..  +++|+++.|+.+....++..++..+..
T Consensus       334 ~~-~~~~~~~~~--~~~~g~~~g~~~~~~~lg~~~gp~i~g  371 (402)
T TIGR00897       334 VP-LAAVFPTLA--PKHKGAAMSVLNLSAGLSAFLAPAIAV  371 (402)
T ss_pred             HH-HHHHHHhhC--cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55 344556655  568999999999999998888766553

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.86  E-value=1.9e-19  Score=183.63  Aligned_cols=340  Identities=11%  Similarity=-0.003  Sum_probs=194.0

Q ss_pred             ccccccchhHHHHHHHHHHhhhhhhhhhh-hc-CCCCCCCChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhh
Q 011720           19 SLFRYNSPLVQVSLIGLVCFCCPGMFNAL-SG-MGGGGQLDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGC   96 (479)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~-l~~~~~~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~   96 (479)
                      +...++++...+.+..++.++..++.... .. +..+...++...+...++.+....+++++.|.++||+|||+++.++.
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~   88 (399)
T PRK05122          9 SGLRLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGL   88 (399)
T ss_pred             ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHH
Confidence            33445555555555555554443332221 11 11222234556777788888999999999999999999999999998


Q ss_pred             HHHHHHHHHHHhhhcc-----CchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHH
Q 011720           97 STYVLYAGSFLYYNHH-----HDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIP  171 (479)
Q Consensus        97 ~~~~i~~~~~~~~~~~-----~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~  171 (479)
                      +++.+...........     .+.+++++.|+++|++.+...++...++.|..|+++|++.++++.....+|.++|+.++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~  168 (399)
T PRK05122         89 CGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLG  168 (399)
T ss_pred             HHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHH
Confidence            8776533332221111     24567899999999999999888888889999999999999999999999999999887


Q ss_pred             hhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccC-CcccccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHH
Q 011720          172 FIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILP-PSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPA  250 (479)
Q Consensus       172 ~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~-~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~  250 (479)
                      ..+..      ..+|+.......  .+..+..++.++ |+.. +++      +++.+.++.++..++   ......+. .
T Consensus       169 ~~l~~------~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~---~~~~~~~~-~  229 (399)
T PRK05122        169 VLLYH------WGGLAGLGLLIM--LLALLGLLLARPRPAVP-PVK------GERLPFRRVLGRVWP---YGMGLALA-S  229 (399)
T ss_pred             HHHHH------cccHHHHHHHHH--HHHHHHHHHHhcCCCCC-CCC------ccchhHHHHHHHHHH---HHHHHHHH-H
Confidence            65532      134543221111  111111122221 2111 000      011122222221111   11111111 0


Q ss_pred             HHHhhhhhhccccccc-cccccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhh
Q 011720          251 AWASNFFYSYQFNNVN-GLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLAS  329 (479)
Q Consensus       251 ~~~~~~~~s~~~~~~~-~~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~  329 (479)
                      ..+.. ...+. +.+. ..++  .+.++....++++.+++.++.+++.||  ++||+....+...+. +....    ...
T Consensus       230 ~~~~~-~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r--~~~~~~~~~~~~~~~-~~~~~----~~~  298 (399)
T PRK05122        230 IGFGT-IATFI-TLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINR--LGGLRVAIVSLLVEI-LGLLL----LWL  298 (399)
T ss_pred             HHHHH-HHHHH-HHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHH-HHHHH----HHH
Confidence            00100 01111 1111 1112  233444556788888999999999999  567775544432221 11111    100


Q ss_pred             hcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhh
Q 011720          330 QLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQV  407 (479)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~  407 (479)
                          .              ++........++.|++.+...+.......+.. |+++|+++.++++....+|..++..+
T Consensus       299 ----~--------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~  357 (399)
T PRK05122        299 ----A--------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRV-PPQNRGAALGAYSVFLDLSLGITGPL  357 (399)
T ss_pred             ----h--------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                0              11223344456677777766665555666777 78899999999999888887766444

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.86  E-value=6.5e-20  Score=182.82  Aligned_cols=316  Identities=19%  Similarity=0.225  Sum_probs=194.8

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      .++...+...++......++.++.|+++||+|||+.+.++.++..+.  ..+.. .++|.+.++++|++.|++.+..+++
T Consensus        29 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~  105 (352)
T PF07690_consen   29 LSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALG--SLLLA-FASNFWLLLIARFLLGIGSGFFSPA  105 (352)
T ss_dssp             TTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHH--HHHHH-HHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhH--HHHhh-hhhhHHHHhhhcccccccccccccc
Confidence            34555666777888888999999999999999999999999988774  12221 2367889999999999999999999


Q ss_pred             hhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCcccccC
Q 011720          136 QGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRVIRD  215 (479)
Q Consensus       136 ~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~~r~  215 (479)
                      ...++.|+.|+++|++.+++.....++|.++|+.++..+...    .+|++ .+++..++.++..++..++.++++.+++
T Consensus       106 ~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~----~~~~~-~~~~~~~~~~~~~il~~~~~~~~~~~~~  180 (352)
T PF07690_consen  106 SNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY----FGWRW-AFLISAILSLIAAILFILFLPEPPPPRE  180 (352)
T ss_dssp             HHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH----CHHCC-HHHHHHHHHHHHHHHHHCCC---STTTT
T ss_pred             ccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc----ccccc-ccccccchhhhhhhhHhhhhhhcccccc
Confidence            999999999999999999999999999999999998866421    12333 3444444455444433333332221111


Q ss_pred             CCCcccccccCCHHHHHHHHHHHh-hchHHHHHHHHHHHhh--h-hhhcccccccc--cccc-chhhhHHHHHHHHHHHH
Q 011720          216 DGTRCTNIKYSKVSTEAIEILKLF-RNWKMLLLFPAAWASN--F-FYSYQFNNVNG--LMFN-LRTRGLNNVFYWGAQML  288 (479)
Q Consensus       216 d~~~~~~~~~~~~~~~~~~~~~~~-~~~r~ll~~~~~~~~~--~-~~s~~~~~~~~--~~f~-~~~~~l~~~~~~i~~~i  288 (479)
                      +.++.+.  ++..++++++.++.. ++|.++......+...  + ......+.+..  .+++ ..+.+......++..++
T Consensus       181 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  258 (352)
T PF07690_consen  181 RESPKES--ESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGII  258 (352)
T ss_dssp             --SSTTT--T--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHH
T ss_pred             ccccccc--ccccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHH
Confidence            1111000  000111112212222 2332321111111111  1 11111133322  2344 44556666777888888


Q ss_pred             HHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHH
Q 011720          289 GSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMF  368 (479)
Q Consensus       289 ~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  368 (479)
                      +.++.+++.||  +++|+........+.+.. ..    +..    .        ...   .+........++.|++.+..
T Consensus       259 ~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~-~~----~~~----~--------~~~---~~~~~~~~~~~~~g~~~~~~  316 (352)
T PF07690_consen  259 GSLLAGRLSDR--FGRRRRLLIAILLLILGA-LG----LLL----L--------PFS---SSPVWLIIALFLIGFGFGIV  316 (352)
T ss_dssp             HHHHHHHHHHH--TTCHHHHHHHHHHHHHHH-HH----HCC----S--------HHH---CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--cCcHHHHHHHHHHHHHHH-HH----HHH----H--------HHh---hhHHHHHHHHHHHHHHHHHH
Confidence            89999999999  566665544433321111 11    110    0        001   12233444666788888888


Q ss_pred             HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHH
Q 011720          369 QSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVA  404 (479)
Q Consensus       369 ~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~  404 (479)
                      ++....+..+.. |+++|+++.++.+..++++..++
T Consensus       317 ~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~~~~ig  351 (352)
T PF07690_consen  317 FPILFSLIQELV-PPEYRGTAFGLFNSIGSLGGIIG  351 (352)
T ss_dssp             CHHHHHHHHCCC-HTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHC
Confidence            888888888988 77899999999999999888765

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.86  E-value=7.1e-19  Score=177.94  Aligned_cols=312  Identities=14%  Similarity=0.045  Sum_probs=194.0

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      ++...+...+....+..+++++.|++.||+|||+.+.++.++..+....  .. .+++.+.+++.|++.|++.+...+..
T Consensus        38 s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~g~~~~~~~~~~  114 (385)
T TIGR00710        38 PASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLG--LA-LSNNIETLLVLRFVQAFGASAGSVIS  114 (385)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHH--HH-HHccHHHHHHHHHHHHcchhHHHHHH
Confidence            4555667777888888999999999999999999999998877663332  22 35788999999999999999999999


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCcccccC
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRVIRD  215 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~~r~  215 (479)
                      ..++.|+.|+++|++.+++......+|..+|+.+...+..+      .+|+ .+++..++..+..++..+..||++.+++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (385)
T TIGR00710       115 QALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW------LSWHAIFAFLSLAGILLSALIFFILPETLPYEA  188 (385)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcc
Confidence            99999999999999999999999999999999887765421      3454 2333333333333333344444321111


Q ss_pred             CCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhh-hhhh--cccccccc--ccccchhhhHHHHHHHHHHHHHH
Q 011720          216 DGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASN-FFYS--YQFNNVNG--LMFNLRTRGLNNVFYWGAQMLGS  290 (479)
Q Consensus       216 d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~-~~~s--~~~~~~~~--~~f~~~~~~l~~~~~~i~~~i~~  290 (479)
                               ++..++..++..+.+++|+++.......... ..+.  ...+.+..  .+++..+.++.....+++.+++.
T Consensus       189 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~  259 (385)
T TIGR00710       189 ---------RIQISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGG  259 (385)
T ss_pred             ---------cCCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence                     0111122233334456666554332221111 1111  11122221  23455566777777889999999


Q ss_pred             HHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHH
Q 011720          291 VGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQS  370 (479)
Q Consensus       291 ~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  370 (479)
                      ++.+++.||  ++||+....+...+.+......     ... ..          ..  ..........++.|++.+...+
T Consensus       260 ~~~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~----------~~--~~~~~~~~~~~~~g~~~~~~~~  319 (385)
T TIGR00710       260 FLNGRFIKK--WGAKSLLRMGLILFAVSAVLLE-----ITA-IL----------GL--GSWAMIIGPMMFVGIGNSMISS  319 (385)
T ss_pred             HHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHH-----HHH-Hh----------cc--chHHHHHHHHHHHHHHHHHHHH
Confidence            999999999  6788766655433221111111     000 00          11  1223334455667777776666


Q ss_pred             HHHHHHHHhcCCchhhhHHHHHHHHHHHH-HHHHHhhhc
Q 011720          371 MVYWVIGALADDSETLSRYTGFYKGVQSA-GAAVAWQVD  408 (479)
Q Consensus       371 ~~~~~~~~i~~~~~~r~~~~~~~~~~~~~-g~~i~~~~~  408 (479)
                      .......+..  +++++++.++.+..+.. +...+..+.
T Consensus       320 ~~~~~~~~~~--~~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       320 IAMAYALEDF--PHVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHhccC--cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            5655555655  46788999988877754 333333333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.85  E-value=1.2e-19  Score=190.49  Aligned_cols=117  Identities=15%  Similarity=0.165  Sum_probs=98.8

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      .++...+...+..+.+..+++++.|+++||+|||+.+.++.++..+.  ..... .++|++.++++|++.|++.+...+.
T Consensus        52 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~--~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~  128 (496)
T PRK03893         52 LTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVG--TLACG-FAPGYWTLFIARLVIGMGMAGEYGS  128 (496)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--HHHHH-HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666777788888899999999999999999999998877663  22222 3568999999999999999998888


Q ss_pred             hhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          136 QGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       136 ~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      ...++.|+.|+++|++.++++.....+|..+|+.+...+.
T Consensus       129 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  168 (496)
T PRK03893        129 SATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV  168 (496)
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8899999999999999999999999999999998877553

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.85  E-value=2e-19  Score=180.69  Aligned_cols=312  Identities=12%  Similarity=0.020  Sum_probs=187.6

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      ++...+...++.+.+..+++++.|+++||+|||+++.++.++..+..  .... .++|.+.++++|++.|++.+..++..
T Consensus        36 s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~  112 (377)
T TIGR00890        36 GVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGF--TFYA-IADSLAALYLTYGLASAGVGIAYGIA  112 (377)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHH--HHHH-HHHHHHHHHHHHHHHhHHHHHHHHhH
Confidence            45567777888899999999999999999999999999998877633  3322 35789999999999999999887777


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCcccccC
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRVIRD  215 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~~r~  215 (479)
                      ..++.|+.| ++||++.+++.....+|..+++.+...+..      ..+|+ .+++..++.++..++.+++.++++.+++
T Consensus       113 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (377)
T TIGR00890       113 LNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVIN------LEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLI  185 (377)
T ss_pred             HHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHh------cccHHHHHHHHHHHHHHHHHHHHHheecCchhcc
Confidence            777778765 689999999999998888765544333321      13454 2333333333333333333322111110


Q ss_pred             CCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhhhh---hccccccc-cccccchhhhHHHHHHHHHHHHHHH
Q 011720          216 DGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFY---SYQFNNVN-GLMFNLRTRGLNNVFYWGAQMLGSV  291 (479)
Q Consensus       216 d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~~---s~~~~~~~-~~~f~~~~~~l~~~~~~i~~~i~~~  291 (479)
                      + ++.   +.+.   +.++..+.+++|+.++.....+......   ...+..+. ..+.+..+.++.....+++.+++.+
T Consensus       186 ~-~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (377)
T TIGR00890       186 K-TNI---EVSV---KDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRP  258 (377)
T ss_pred             c-cCc---ccch---hhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            0 000   0000   1112234455665544433322222111   11112221 1223444556667778899999999


Q ss_pred             HhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHH
Q 011720          292 GIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSM  371 (479)
Q Consensus       292 ~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  371 (479)
                      +.|++.||  +|||+....+..... +....    ..    +.+       +     ..........+..++..+...+.
T Consensus       259 ~~g~l~dr--~g~~~~~~~~~~~~~-~~~~~----~~----~~~-------~-----~~~~~~~~~~~~~g~~~g~~~~~  315 (377)
T TIGR00890       259 FLGALSDK--IGRQKTMSIVFGISA-VGMAA----ML----FIP-------M-----LNDVLFLATVALVFFTWGGTISL  315 (377)
T ss_pred             HHHHHHHH--HhhhhhhhHHHHHHH-HHHHH----HH----Hcc-------c-----chhHHHHHHHHHHHHHhccchhc
Confidence            99999999  678876555443321 11111    10    010       0     11111222233444444444554


Q ss_pred             HHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          372 VYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       372 ~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      ...+..|.+ |+++|+++.++.+....+|..++..+..
T Consensus       316 ~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~~~~~~~g  352 (377)
T TIGR00890       316 FPSLVSDIF-GPANSAANYGFLYTAKAVAGIFGGLIAS  352 (377)
T ss_pred             cHHHHHHHh-hhhhhhhHhHHHHHHHHHHHHHHHHHHH
Confidence            556788888 7889999999999999998888876553

>PRK09952 shikimate transporter; Provisional

Probab=99.85  E-value=2e-19  Score=185.99  Aligned_cols=309  Identities=13%  Similarity=0.027  Sum_probs=171.0

Q ss_pred             HHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchh--------hHHHHHHHHhhhhhhhhhhhh
Q 011720           66 TALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQT--------FAVVAGAVLGIGAGLLWAGQG  137 (479)
Q Consensus        66 ~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~--------~li~~R~i~G~g~g~~~~~~~  137 (479)
                      ++.+.+..+++++.|+++||+|||+++.++.+++.+.....  . .+++++        .+++.|+++|++.|..+++..
T Consensus        71 ~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~  147 (438)
T PRK09952         71 GVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALI--G-LLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAA  147 (438)
T ss_pred             HHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH--h-cCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Confidence            34556677889999999999999999999999888743332  2 356665        588999999999999999889


Q ss_pred             hhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCC--cccccchhHHHHHHHHHHHHHHHHhccCCcccccC
Q 011720          138 AIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTD--AESVNDKTYIAFMCFMSAGAALSLAILPPSRVIRD  215 (479)
Q Consensus       138 ~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~--~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~~r~  215 (479)
                      .++.|+.|+++||+..+.......+|.+++..+...+.....+  ...++|+.......+..+..+......||++..++
T Consensus       148 ~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~  227 (438)
T PRK09952        148 LLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQ  227 (438)
T ss_pred             HHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHH
Confidence            9999999999999999999999999998887665544321100  01356764322222211111111111233321100


Q ss_pred             CCCcc-cccccCCHHHHHHHHHHHhhchHHHHHHHH-HHHhhh-hh---hccccccccc--cccchhhhHHHHHHHHHHH
Q 011720          216 DGTRC-TNIKYSKVSTEAIEILKLFRNWKMLLLFPA-AWASNF-FY---SYQFNNVNGL--MFNLRTRGLNNVFYWGAQM  287 (479)
Q Consensus       216 d~~~~-~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~-~~~~~~-~~---s~~~~~~~~~--~f~~~~~~l~~~~~~i~~~  287 (479)
                      +..+. +.+++.+..   +   ..+++|+.+..... .+...+ .+   ++. +.+...  +++...........++..+
T Consensus       228 ~~~~~~~~~~~~~~~---~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~g~s~~~~~~~~~~~g~~~~  300 (438)
T PRK09952        228 QQHEQAAAKKRIPVI---E---ALLRHPGAFLKIIALRLCELLTMYIVTAFA-LNYSTQNLGLPRELFLNIGLLVGGLSC  300 (438)
T ss_pred             HHhhcccccccCCHH---H---HHHHchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            00000 000011111   1   12234444333221 111111 11   121 222221  2232222233445577778


Q ss_pred             HHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHH
Q 011720          288 LGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAM  367 (479)
Q Consensus       288 i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  367 (479)
                      ++.++.|++.||  +|||+....+..... +......  ...    .          ..  .......+..++.++..+.
T Consensus       301 i~~~~~g~l~Dr--~grr~~~~~~~~~~~-~~~~~~~--~~~----~----------~~--~~~~~~~~~~~l~~~~~~~  359 (438)
T PRK09952        301 LTIPCFAWLADR--FGRRRVYITGALIGT-LSAFPFF--MAL----E----------AQ--SIFWIVFFSIMLANIAHDM  359 (438)
T ss_pred             HHHHHHHHHHHH--hCchHHHHHHHHHHH-HHHHHHH--HHH----H----------cC--ChHHHHHHHHHHHHHHHHH
Confidence            888899999999  778876555433221 1111110  100    0          01  1122223334445666666


Q ss_pred             HHHHHHHHHHHhcCCchhhhHHHHHHHHH-HHHHHHHHhh
Q 011720          368 FQSMVYWVIGALADDSETLSRYTGFYKGV-QSAGAAVAWQ  406 (479)
Q Consensus       368 ~~~~~~~~~~~i~~~~~~r~~~~~~~~~~-~~~g~~i~~~  406 (479)
                      ..+..+.+++|.+ |.+.|+.+.++.... ..++..++..
T Consensus       360 ~~~~~~~~~~e~~-p~~~r~tg~g~~~~~~~~lgg~~~p~  398 (438)
T PRK09952        360 VVCVQQPMFTEMF-GASYRYSGAGVGYQVASVVGGGFTPF  398 (438)
T ss_pred             HHHHHHHHHHHHC-CcchhHHHHhHHHHHHHHHHHHHHHH
Confidence            6666778899999 778888887775433 3355544433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.85  E-value=5.4e-19  Score=184.82  Aligned_cols=322  Identities=13%  Similarity=0.038  Sum_probs=201.5

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      ++...+...+....+..++.++.|+++||+|||+.++++.+++.+.  ...+. .++|.+.++++|+++|++.+...+..
T Consensus        35 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~--~~~~~-~~~~~~~l~~~~~~~G~~~~~~~~~~  111 (485)
T TIGR00711        35 SLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLG--SLLCG-VAPNLELMIIFRVIQGFGGGPLIPLS  111 (485)
T ss_pred             ChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH--HHHHh-CcCCHHHHHHHHHHHHhhhhhHHHHH
Confidence            3445556677788888899999999999999999999999988773  33333 46889999999999999999999999


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCcccccCC
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRVIRDD  216 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~~r~d  216 (479)
                      ..++.|+.|+++||+.++++.....+|..+|+.++..+..+    .+|+|. +++...+.++..++..++.|+++..+++
T Consensus       112 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~----~~w~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (485)
T TIGR00711       112 FSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN----YHWRWI-FLINVPIGIIVVVVAFFILPRDKPAASE  186 (485)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC----cCceeh-hhhhhHHHHHHHHHHHHHcCCccccccC
Confidence            99999999999999999999999999999999987765321    234443 3333333333333334444433211111


Q ss_pred             CCc-c----------------cccccCCHH---------------------HHHH-----HHHHHhhchHHHHHHHHHHH
Q 011720          217 GTR-C----------------TNIKYSKVS---------------------TEAI-----EILKLFRNWKMLLLFPAAWA  253 (479)
Q Consensus       217 ~~~-~----------------~~~~~~~~~---------------------~~~~-----~~~~~~~~~r~ll~~~~~~~  253 (479)
                      +.+ .                ...++..+.                     ++.+     ...+.+++|++.......+.
T Consensus       187 ~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (485)
T TIGR00711       187 NFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSL  266 (485)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHH
Confidence            000 0                000000000                     0000     01123445544443322222


Q ss_pred             hhhh---hhcccccccc--ccccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhh
Q 011720          254 SNFF---YSYQFNNVNG--LMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLA  328 (479)
Q Consensus       254 ~~~~---~s~~~~~~~~--~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~  328 (479)
                      .++.   ..+.++.+..  .+++..+.++.....+++.++++++.|++.||  +|||+....+...+. +....    +.
T Consensus       267 ~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r--~~~~~~~~~g~~~~~-~~~~~----~~  339 (485)
T TIGR00711       267 LGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK--IDPRKLVTIGLILYA-VGFYW----RA  339 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCcHHHHHHHHHHHH-HHHHH----Hh
Confidence            2211   1111233332  24466677888888899999999999999999  678876555543321 11111    10


Q ss_pred             hhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          329 SQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      .  ...          .+  ..........++.|++.+...+.......+.. |+++++++.++++..+.+|.+++..+.
T Consensus       340 ~--~~~----------~~--~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~g~~ig~~i~  404 (485)
T TIGR00711       340 F--TFT----------PD--TPFLAIALPQFIRGFGMGCFFMPLTTIALSGL-PPHKIARGSSLSNFTRQLGGSIGTALI  404 (485)
T ss_pred             c--cCC----------CC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            0  011          01  22233344456677777666654555555666 788999999999999999999887655

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK12382 putative transporter; Provisional

Probab=99.85  E-value=1e-18  Score=177.86  Aligned_cols=307  Identities=12%  Similarity=0.011  Sum_probs=184.5

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhh-----ccCchhhHHHHHHHHhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYN-----HHHDQTFAVVAGAVLGIGAG  130 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~-----~~~~~~~li~~R~i~G~g~g  130 (479)
                      .++...+...+..+....+++++.|+++||+|||+.+.++.+...+.........     ..++.+.++++|+++|++.+
T Consensus        48 ~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  127 (392)
T PRK12382         48 FGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGES  127 (392)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHH
Confidence            4566677788888899999999999999999999999999876655322221110     12467889999999999999


Q ss_pred             hhhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCc
Q 011720          131 LLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPS  210 (479)
Q Consensus       131 ~~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~  210 (479)
                      ...++..+++.|..|+++|+++++++......|..+|+.++..+..      ..+|+....  ...++..+...+.++.+
T Consensus       128 ~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~------~~g~~~~~~--~~~~~~~~~~~~~~~~~  199 (392)
T PRK12382        128 QLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHS------HFGFAALAL--TTMVLPLLAWAFNGTVR  199 (392)
T ss_pred             HHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHh------ccChHHHHH--HHHHHHHHHHHHHHhcc
Confidence            9888888888999999999999999999999999999988765532      134542211  11111111112222111


Q ss_pred             ccccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhhhhhccccccccccccchhhhHHHHHHHHHHHHHH
Q 011720          211 RVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFYSYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGS  290 (479)
Q Consensus       211 ~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~l~~~~~~i~~~i~~  290 (479)
                      +.++++      +++++.    ++..+.+.++++........... ...+. +.+... .+....++....++++.+++.
T Consensus       200 ~~~~~~------~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~-~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~  266 (392)
T PRK12382        200 KVPAHA------GERPSL----WSVVGLIWKPGLGLALQGVGFAV-IGTFV-SLYFAS-KGWAMAGFTLTAFGGAFVLMR  266 (392)
T ss_pred             CCCCCc------ccCchH----HHHHHHHHHhHHHHHHHHHHHhH-HHHHH-HHHHHh-cCCchhHHHHHHHHHHHHHHH
Confidence            100000      011122    22222222233222111110100 01111 111110 111233444556777888899


Q ss_pred             HHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHH
Q 011720          291 VGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQS  370 (479)
Q Consensus       291 ~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  370 (479)
                      ++.|++.||  +|||+....+..... +....    ...    .              ++........++.|+..+...+
T Consensus       267 ~~~g~l~~r--~g~~~~~~~~~~~~~-~~~~~----~~~----~--------------~~~~~~~~~~~l~g~~~~~~~~  321 (392)
T PRK12382        267 VLFGWMPDR--FGGVKVAIVSLLVET-VGLLL----LWL----A--------------PTAWVALAGAALTGAGCSLIFP  321 (392)
T ss_pred             HHHHHHHHh--cCCCeehHHHHHHHH-HHHHH----HHH----c--------------ccHHHHHHHHHHHHHHHHhHHH
Confidence            999999999  678876555543321 11111    100    0              1122334455566777666666


Q ss_pred             HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          371 MVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       371 ~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      .......+.. ++++|+++.++++....+|.+++..+..
T Consensus       322 ~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~ig~~~~g  359 (392)
T PRK12382        322 ALGVEVVKRV-PSQVRGTALGGYAAFQDIAYGVSGPLAG  359 (392)
T ss_pred             HHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666677888 7889999999999999888888766553

>TIGR00895 2A0115 benzoate transport

Probab=99.84  E-value=5.2e-19  Score=179.23  Aligned_cols=316  Identities=15%  Similarity=0.115  Sum_probs=191.2

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      ++...+...+....+..+++++.|+++||+|||+.+.++.++..+....  .. .+++.+.+++.|++.|++.+...+..
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~g~~~~~~~~~~  126 (398)
T TIGR00895        50 DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLL--CA-LATNVTQLLILRFLAGLGLGGLMPNL  126 (398)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHH--HH-HccchHHHHHHHHHHhcccccchhhH
Confidence            4455566667777778889999999999999999999998876663222  22 35788999999999999999999999


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCccc--c
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRV--I  213 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~--~  213 (479)
                      .+++.|+.|+++|++.++++.....+|..+|+.+...+...      .+|+ .+.+..++..+..++..++.|+++.  .
T Consensus       127 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (398)
T TIGR00895       127 NALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV------FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLV  200 (398)
T ss_pred             HHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc------ccceeehhhhhhHHHHHHHHHHHhCCCCChHHH
Confidence            99999999999999999999999999999999887655321      2333 2322222333333333333443221  1


Q ss_pred             cCCCCc-----------------ccccccCCHHHHHHHHHHHhh----chHHHHHHHHHHHhhhhh---hccccccc-cc
Q 011720          214 RDDGTR-----------------CTNIKYSKVSTEAIEILKLFR----NWKMLLLFPAAWASNFFY---SYQFNNVN-GL  268 (479)
Q Consensus       214 r~d~~~-----------------~~~~~~~~~~~~~~~~~~~~~----~~r~ll~~~~~~~~~~~~---s~~~~~~~-~~  268 (479)
                      ++++++                 .+.++.+...++.++.++.++    .++.+............+   ....+.+. ..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (398)
T TIGR00895       201 SKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVEL  280 (398)
T ss_pred             hcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            110000                 000000000111122222222    122222221111111111   11112111 12


Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCC
Q 011720          269 MFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSG  348 (479)
Q Consensus       269 ~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (479)
                      +++....++......++.+++.++.+++.||  ++||+. ..+.....++...+    . . .  .              
T Consensus       281 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~-~~~~~~~~~~~~~~----~-~-~--~--------------  335 (398)
T TIGR00895       281 GFSLSLAATGGALFNFGGVIGSIIFGWLADR--LGPRVT-ALLLLLGAVFAVLV----G-S-T--L--------------  335 (398)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cchHHH-HHHHHHHHHHHHHH----H-H-H--h--------------
Confidence            3455556777778889999999999999999  677732 22221111111111    0 0 0  0              


Q ss_pred             CCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhh
Q 011720          349 NDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQV  407 (479)
Q Consensus       349 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~  407 (479)
                      .+........++.|++.+..++..+.++.+.+ |+++|+++.|+......+|.+++..+
T Consensus       336 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~g~~~  393 (398)
T TIGR00895       336 FSPTLLLLLGAIAGFFVNGGQSGLYALMALFY-PTAIRATGVGWAIGIGRLGAIIGPIL  393 (398)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11123345556778888888887888899999 88999999999999888888877554

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.84  E-value=2.5e-19  Score=184.88  Aligned_cols=297  Identities=15%  Similarity=0.103  Sum_probs=166.3

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCch--------hhHHHHHHHHhhhhhhhhhh
Q 011720           64 ANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQ--------TFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        64 ~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~--------~~li~~R~i~G~g~g~~~~~  135 (479)
                      ..+..+.+..+++++.|+++||+|||+++.++.+.+.+.+....   .++++        ..+++.|+++|+|.|..++.
T Consensus        68 ~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~  144 (432)
T PRK10406         68 VFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIA---CLPGYETIGTWAPALLLLARLFQGLSVGGEYGT  144 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh---hcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhh
Confidence            34556666779999999999999999999999999887444332   23444        36899999999999999999


Q ss_pred             hhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCC--cccccchh-HHHHHHHHHHHHHHHHhccCCccc
Q 011720          136 QGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTD--AESVNDKT-YIAFMCFMSAGAALSLAILPPSRV  212 (479)
Q Consensus       136 ~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~--~~~~~~~~-~~i~~~l~~l~~~l~~~~~~~~~~  212 (479)
                      ..++++|+.|+++||+..++.......|..+++++...+.....+  ...++||. |.+..++.++.. ......||++.
T Consensus       145 ~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~-~~~~~~~e~~~  223 (432)
T PRK10406        145 SATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVAL-WLRRQLDETSQ  223 (432)
T ss_pred             HHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHH-HHHhcCCCCch
Confidence            999999999999999999999888888888888765544321100  01356764 322222222211 11112233221


Q ss_pred             ccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHH-Hhhh-hh---hcccccccc--ccccchhhhHHHHHHHHH
Q 011720          213 IRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAW-ASNF-FY---SYQFNNVNG--LMFNLRTRGLNNVFYWGA  285 (479)
Q Consensus       213 ~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~-~~~~-~~---s~~~~~~~~--~~f~~~~~~l~~~~~~i~  285 (479)
                      .++ +     ++++  ..++++   .+++|+.++...... ..+. ++   .+. +++..  .+++..+.++......+.
T Consensus       224 ~~~-~-----~~~~--~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-p~~l~~~~g~s~~~~~~~~~i~~~~  291 (432)
T PRK10406        224 QET-R-----ALKE--AGSLKG---LWRNRRAFIMVLGFTAAGSLCFYTFTTYM-QKYLVNTAGMHANVASGIMTAALFV  291 (432)
T ss_pred             HHH-h-----hhcc--cccHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            100 0     0000  011232   234455443322212 1111 11   222 44332  234444555555555666


Q ss_pred             HHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhH
Q 011720          286 QMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLD  365 (479)
Q Consensus       286 ~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  365 (479)
                      ..++.++.|++.||  ++||+....+.....+......   ...    ..         .+  ... ....+.....+..
T Consensus       292 ~~i~~~~~G~l~Dr--~grr~~~~~~~~~~~~~~~~~~---~~~----~~---------~~--~~~-~~~~~~~~~~~~~  350 (432)
T PRK10406        292 FMLIQPLIGALSDK--IGRRTSMLCFGSLAALFTVPIL---SAL----QN---------VS--SPY-AAFGLVMCALLIV  350 (432)
T ss_pred             HHHHHHHHHHHHHH--cCchHHHHHHHHHHHHHHHHHH---HHH----Hc---------CC--cHH-HHHHHHHHHHHHH
Confidence            67778888999999  6788755443222111110010   000    00         00  111 1111111122222


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHH
Q 011720          366 AMFQSMVYWVIGALADDSETLSRYTGFYKGVQS  398 (479)
Q Consensus       366 ~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~  398 (479)
                      +...+..+.+.+|.+ |++.|+++.|+.+...+
T Consensus       351 ~~~~~~~~~~~~e~f-p~~~r~t~~g~~~~~g~  382 (432)
T PRK10406        351 SFYTSISGILKAEMF-PAQVRALGVGLSYAVAN  382 (432)
T ss_pred             HHHHHHHHHHHHHHC-CCCccchhhhHHHHHHH
Confidence            233344566788999 88999999998876544

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.84  E-value=2.7e-19  Score=185.87  Aligned_cols=319  Identities=11%  Similarity=0.087  Sum_probs=190.3

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHH-HHHHHhhhhhhhhhhh
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVV-AGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~-~R~i~G~g~g~~~~~~  136 (479)
                      ....+...+..+....++.++.|+++||+|||+.++++.+++.+..  ..+. .+++.+.+++ .|++.|++.+..++..
T Consensus        53 ~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~--~~~~-~~~~~~~l~~~~~~l~G~~~~~~~~~~  129 (455)
T TIGR00892        53 YSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGM--ILAS-FSSNVIELYLTAGFITGLGLAFNFQPS  129 (455)
T ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHH--HHHH-HhhhHHHHHHHHHHHHHhcchhhhhHH
Confidence            4445556667777778888999999999999999999988776632  2222 3567887765 5799999999876666


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCccc---
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRV---  212 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~---  212 (479)
                      ..++.++. +++|++++++......+|..+++.+...+...      ++|+ .|++..++.++..+..++++++.+.   
T Consensus       130 ~~~~~~~~-~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~------~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~  202 (455)
T TIGR00892       130 LTMLGKYF-YRRRPLANGLAMAGSPVFLSTLAPLNQYLFES------FGWRGSFLILGGLLLHCCVCGALMRPVGPSQRV  202 (455)
T ss_pred             HHHHHHHH-HhhHHHHHHHHHhcccHHHHHHHHHHHHHHHH------hChHHHHHHHHHHHHHHHHHHHHhCCCCccccc
Confidence            67777877 58999999999999999998888876655321      3453 3334344444333333444442211   


Q ss_pred             ccC---CCCccc-ccc---cCCHHHHHHHH--HHHhhchHHHHHHHHHHHhhhh----hhccccccc-cccccchhhhHH
Q 011720          213 IRD---DGTRCT-NIK---YSKVSTEAIEI--LKLFRNWKMLLLFPAAWASNFF----YSYQFNNVN-GLMFNLRTRGLN  278 (479)
Q Consensus       213 ~r~---d~~~~~-~~~---~~~~~~~~~~~--~~~~~~~r~ll~~~~~~~~~~~----~s~~~~~~~-~~~f~~~~~~l~  278 (479)
                      .+.   ++.+.. ..+   ++...++.++.  ++.+++|+++......+..++.    +.+. +.+. ..+++....++.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~~~~~g~s~~~~g~~  281 (455)
T TIGR00892       203 SKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFL-VPYAKDKGVDEYEAAFL  281 (455)
T ss_pred             ccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHH-HHHHHHcCCCHHHHHHH
Confidence            000   000000 000   00111111211  2455666665544433322221    1111 2222 123455566777


Q ss_pred             HHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHH
Q 011720          279 NVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLY  358 (479)
Q Consensus       279 ~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (479)
                      ....+++.+++.++.|++.||++.++|+....+.... .......   . . . .           .   .+.....+..
T Consensus       282 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~-~~~l~~l---l-~-~-~-----------~---~~~~~~~i~~  340 (455)
T TIGR00892       282 LSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALL-FNGLTHL---L-C-A-L-----------A---GDYTGLVIYC  340 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHH-HHHHHHH---H-H-H-H-----------h---chHHHHHHHH
Confidence            7778899999999999999985333343333222111 1111110   0 0 0 0           0   1223344556


Q ss_pred             HHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          359 FSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       359 ~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      ++.|+..+...+..+.++.+.. ++++++++.++++..+++|..++..+..
T Consensus       341 ~~~G~~~g~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~igp~i~G  390 (455)
T TIGR00892       341 IFFGLSFGSVGALLFEVLMDLV-GAQRFSSAVGLVTIVECCAVLIGPPLAG  390 (455)
T ss_pred             HHHHHHhchHHHHHHHHHHHHh-hHHHHhhHHhHHHHHHHHHHHcccccee
Confidence            6677777777777788888888 7788999999999999999888876654

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.84  E-value=2.3e-18  Score=176.14  Aligned_cols=316  Identities=11%  Similarity=0.032  Sum_probs=191.4

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      .++...+...+....+..++.++.|+++||+|||+.+.++.+.+.+....  .. .+++.+.+++.|++.|++.+...+.
T Consensus        45 ~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~--~~-~~~~~~~l~~~~~l~G~~~~~~~~~  121 (406)
T PRK15402         45 AGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLA--IL-LAQSIEQFTLLRFLQGIGLCFIGAV  121 (406)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH--HH-HHccHHHHHHHHHHHHhHhhhHHHH
Confidence            34555666677888888999999999999999999999998877663322  22 3578899999999999999988888


Q ss_pred             hhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCcccccC
Q 011720          136 QGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRVIRD  215 (479)
Q Consensus       136 ~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~~r~  215 (479)
                      ...++.|..|+++|++.+++......+|..+|+.+...+..+    .+|+| .+++..++.++..+...+..|+++..++
T Consensus       122 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~----~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (406)
T PRK15402        122 GYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV----LPWRG-MFVLFAALAALSFFGLWRAMPETAGRVG  196 (406)
T ss_pred             HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cCccH-HHHHHHHHHHHHHHHHHHhCCCCCcccc
Confidence            888899999999999999999888888889999887655321    12333 3333334444433333333444321111


Q ss_pred             CCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhhh---hhcccccccc--ccccchhhhHHHHHHHHHHHHHH
Q 011720          216 DGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFF---YSYQFNNVNG--LMFNLRTRGLNNVFYWGAQMLGS  290 (479)
Q Consensus       216 d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~---~s~~~~~~~~--~~f~~~~~~l~~~~~~i~~~i~~  290 (479)
                      +        +.+.++..++..+.+++|+++............   +....+.+..  .+++..+.++......++.+++.
T Consensus       197 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~  268 (406)
T PRK15402        197 E--------KLSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGN  268 (406)
T ss_pred             c--------cccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence            0        111111122223445667665544333222211   1111122221  23444455666566677888999


Q ss_pred             HHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHH
Q 011720          291 VGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQS  370 (479)
Q Consensus       291 ~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  370 (479)
                      ++.+++.||  ++||+....+...+. +......  +   ....          ..  ..........++.+++.+...+
T Consensus       269 ~~~g~l~~r--~~~~~~~~~~~~~~~-~g~~~~~--~---~~~~----------~~--~~~~~~~~~~~~~g~g~~~~~~  328 (406)
T PRK15402        269 LTLARLTSR--RPLRSLIRMGLWPMV-AGLLLAA--L---ATVI----------SS--HAYLWLTAGLSLYAFGIGLANA  328 (406)
T ss_pred             HHHHHHHHh--cCHHHHHHHHHHHHH-HHHHHHH--H---HHHc----------cc--ccHHHHHHHHHHHHHHHHHHhh
Confidence            999999999  667776555543221 1111111  1   0000          11  1222234444556666665555


Q ss_pred             HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          371 MVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       371 ~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      ..+... ... +++++++..++++..+.++..++..+..
T Consensus       329 ~~~~~~-~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~  365 (406)
T PRK15402        329 GLYRLT-LFS-SDVSKGTVSAAMGMLSMLIFTVGIELSK  365 (406)
T ss_pred             hHHHHH-hhh-ccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            444332 223 3478899999999999888888877654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.84  E-value=4e-19  Score=204.83  Aligned_cols=319  Identities=13%  Similarity=0.007  Sum_probs=194.0

Q ss_pred             hhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhh
Q 011720           60 AANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAI  139 (479)
Q Consensus        60 ~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~  139 (479)
                      ..+...++..+.+.++++++|+++||+|||++++++.++..++.........+++++.++++|++.|++.+..+++..++
T Consensus        48 ~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~  127 (1146)
T PRK08633         48 LTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGI  127 (1146)
T ss_pred             HHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhh
Confidence            45566677778888999999999999999999999887655544333322234678999999999999999999999999


Q ss_pred             hhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhcc--CCcccccch---hHHHHHHHHHHHHHHHHhccCCccccc
Q 011720          140 MTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHR--TDAESVNDK---TYIAFMCFMSAGAALSLAILPPSRVIR  214 (479)
Q Consensus       140 i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~--~~~~~~~~~---~~~i~~~l~~l~~~l~~~~~~~~~~~r  214 (479)
                      +.|+.|+++|++++|++.....+|.++|+.++..+....  .....+.|+   .+++.+.+.++.++ ..+..|+.+..+
T Consensus       128 i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  206 (1146)
T PRK08633        128 IPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLI-FAYRLPKVPAAA  206 (1146)
T ss_pred             hHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHH-HHhcCcCCCCCC
Confidence            999999999999999999999999999999887664320  000011121   11111121222222 223334332111


Q ss_pred             CCCCcccccccCCHHHHHHHHHH-HhhchHHHHHHHHHHHhh---hhhhcccccccc--ccccch-hhhHHHHHHHHHHH
Q 011720          215 DDGTRCTNIKYSKVSTEAIEILK-LFRNWKMLLLFPAAWASN---FFYSYQFNNVNG--LMFNLR-TRGLNNVFYWGAQM  287 (479)
Q Consensus       215 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~r~ll~~~~~~~~~---~~~s~~~~~~~~--~~f~~~-~~~l~~~~~~i~~~  287 (479)
                      .+..+  ...... .++.+..++ .+++|+++..........   ......++.+..  .+++.. ..++.....+++.+
T Consensus       207 ~~~~~--~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~  283 (1146)
T PRK08633        207 PEVFD--KKKYLF-PKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIG  283 (1146)
T ss_pred             ccccc--cccccc-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence            11000  001111 122222233 334454443322211111   111111133322  233444 56777778899999


Q ss_pred             HHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHH
Q 011720          288 LGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAM  367 (479)
Q Consensus       288 i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  367 (479)
                      +++++.+++.||  .++|+...++..++.+. ..+    +.+               .   .+....++..+++|++.+.
T Consensus       284 ~g~~~~g~l~~r--~~~~~~~~~~~~~~~~~-~~~----~~~---------------~---~~~~~~~~~~~~~g~~~~~  338 (1146)
T PRK08633        284 IGSLLAGRLSGR--HIELGLVPLGALGLALS-LFL----LPT---------------A---PSLASVLVLFFLFGFSAGL  338 (1146)
T ss_pred             HHHHHHHHHhCC--ceEccchhHHHHHHHHH-HHH----HHH---------------h---hhHHHHHHHHHHHHHHHHH
Confidence            999999999999  56766555444332111 111    100               1   1223345556677777777


Q ss_pred             HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          368 FQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       368 ~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      ..+..+.++.+.. |++.|++++|+.+++++++..++..+.
T Consensus       339 ~~~~~~~~~~~~~-p~~~rg~~~~~~~~~~~lg~~~~~~~~  378 (1146)
T PRK08633        339 FIVPLNALIQFRA-PEKELGKVLAANNFLQNVGMLLFLALT  378 (1146)
T ss_pred             hhHHHHHHHhhcC-CccchhhhhHHHHHHHHHHHHHHHHHH
Confidence            7776777788888 788899999999999988886654443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.84  E-value=1.9e-18  Score=179.97  Aligned_cols=237  Identities=11%  Similarity=0.078  Sum_probs=150.2

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhh
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQG  137 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~  137 (479)
                      +...+...+..+.++.++++++|+++||+|||+.+.++.++..+........ ...+.+.+++.|+++|++.+..+++..
T Consensus        75 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~r~~~G~~~~~~~~~~~  153 (465)
T TIGR00894        75 GALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWA-AGGGIALVVFCRVIQGLAQGSVSPATH  153 (465)
T ss_pred             HHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHH-HHcCchHHHHHHHHHHHhcccchhhHH
Confidence            3345556777788889999999999999999999999998877643332222 234678899999999999999999999


Q ss_pred             hhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCcccccCC
Q 011720          138 AIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRVIRDD  216 (479)
Q Consensus       138 ~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~~r~d  216 (479)
                      .++.|+.|+++||+.++++.....+|.++|+.+...+...    . .+|+ .+.+..++.++..++.+++.++++...++
T Consensus       154 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~----~-~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~  228 (465)
T TIGR00894       154 KIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCES----W-GGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPC  228 (465)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----c-CCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCC
Confidence            9999999999999999999999999999999988766422    0 1343 23333333443333333333333211110


Q ss_pred             CCcccc-------cccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhhhh---hcccccccc--ccccchhhhHHHHHHHH
Q 011720          217 GTRCTN-------IKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFY---SYQFNNVNG--LMFNLRTRGLNNVFYWG  284 (479)
Q Consensus       217 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~~---s~~~~~~~~--~~f~~~~~~l~~~~~~i  284 (479)
                      .++.+.       ++++...+......+.+++++++......+...+.+   ...++.+..  .+++..+.++......+
T Consensus       229 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~  308 (465)
T TIGR00894       229 ISKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYL  308 (465)
T ss_pred             CCHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHH
Confidence            000000       000000000011223445666665554433332211   111244442  24566667777777888


Q ss_pred             HHHHHHHHhhhhcccc
Q 011720          285 AQMLGSVGIGYVMDFS  300 (479)
Q Consensus       285 ~~~i~~~~~g~l~Dr~  300 (479)
                      +.+++.++.|++.||.
T Consensus       309 ~~~i~~~~~g~l~d~~  324 (465)
T TIGR00894       309 FAWLCSIFAGYLADFL  324 (465)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999983

>PRK10504 putative transporter; Provisional

Probab=99.84  E-value=2.2e-18  Score=179.79  Aligned_cols=320  Identities=13%  Similarity=0.023  Sum_probs=196.1

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      ++...+...+....+..++.++.|+++||+|||+.++.+.+++.+...  .+. .+++.+.++++|+++|++.+...+..
T Consensus        43 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~--~~~-~~~~~~~l~~~~~l~g~~~~~~~~~~  119 (471)
T PRK10504         43 SPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL--FCA-LSGTLNELLLARVLQGVGGAMMVPVG  119 (471)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH--HHH-HhCCHHHHHHHHHHHHhhhHHHHHHH
Confidence            344445556667777888999999999999999999988877766332  222 35789999999999999999998888


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCccc--c
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRV--I  213 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~--~  213 (479)
                      ..++.|+.|+++|++..++.....++|..+|+.+...+..+      .+|+ .|.+..++..+..++.....|+.+.  .
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~------~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~  193 (471)
T PRK10504        120 RLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY------ASWHWIFLINIPVGIIGAIATLMLMPNYTMQTR  193 (471)
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh------ccHHHHHHHHHHHHHHHHHHHHHhCCCccccCC
Confidence            88999999999999999999999999999999988766422      3343 3434344444444443433332221  1


Q ss_pred             cCCCCcc--------------cccccCCHH--------------------HHH-----HHHHHHhhchHHHHHHHHHHHh
Q 011720          214 RDDGTRC--------------TNIKYSKVS--------------------TEA-----IEILKLFRNWKMLLLFPAAWAS  254 (479)
Q Consensus       214 r~d~~~~--------------~~~~~~~~~--------------------~~~-----~~~~~~~~~~r~ll~~~~~~~~  254 (479)
                      |.|....              ...+...+.                    ++.     +...+.+++|++.......+..
T Consensus       194 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~  273 (471)
T PRK10504        194 RFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAG  273 (471)
T ss_pred             CCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHHHHHHHH
Confidence            2221000              000000000                    000     0012344556555444333322


Q ss_pred             hhhh---hcccccccc--ccccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhh
Q 011720          255 NFFY---SYQFNNVNG--LMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLAS  329 (479)
Q Consensus       255 ~~~~---s~~~~~~~~--~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~  329 (479)
                      +..+   .+..+.+..  .+++....++......++.+++.++.+++.||  +|||+....+.....+.. ..    +..
T Consensus       274 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r--~g~~~~~~~~~~~~~~~~-~~----~~~  346 (471)
T PRK10504        274 RIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR--FGYRRVLVATTLGLALVS-LL----FML  346 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCchHHHHHHHHHHHHHH-HH----HHh
Confidence            2211   111122222  23455566777777888888888999999999  688887665544322111 11    111


Q ss_pred             hcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          330 QLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                         ..          ..  ..........++.|+..+...+....+..+.. |+++++.+.++.++.+.+|.+++..+.
T Consensus       347 ---~~----------~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~g~~ig~~i~  409 (471)
T PRK10504        347 ---VA----------LL--GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDL-PDNLASSGNSLLSMIMQLSMSIGVTIA  409 (471)
T ss_pred             ---cc----------cc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHhccchHHHHHHHHHHHHHHHHHHH
Confidence               11          01  11122233344556666665565666777888 778999999999999999988876554

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.84  E-value=3.2e-18  Score=175.61  Aligned_cols=227  Identities=14%  Similarity=0.045  Sum_probs=152.0

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      .+....+...++++.+++++.++.|+++||+|||+++..+.+++.+  +...+. .++|.+.++++|+++|++.+...+.
T Consensus        48 ~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~--~~~~~~-~a~~~~~l~~~r~l~Gi~~~~~~~~  124 (413)
T PRK15403         48 ADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTL--ACAATL-FTTSMTQFLIARFIQGTSICFIATV  124 (413)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHH--HHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677788899999999999999999999999999999888776  333332 4678999999999999999876666


Q ss_pred             hhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCccccc
Q 011720          136 QGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRVIR  214 (479)
Q Consensus       136 ~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~~r  214 (479)
                      ...++.|..|+++|++.++++.....+|..+|+.++..+..+      ++|+ .|++..++.++..++.++..|+++. +
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~------~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~-~  197 (413)
T PRK15403        125 GYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF------VHWKVLFAIIAVMGLIAFVGLLLAMPETVK-R  197 (413)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHHHHHhCCCCcc-c
Confidence            677888999999999999999999999999999988766422      3453 3444444444444333344454321 1


Q ss_pred             CCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhh-hhhc--ccccccc--ccccchhhhHHHHHHHHHHHHH
Q 011720          215 DDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNF-FYSY--QFNNVNG--LMFNLRTRGLNNVFYWGAQMLG  289 (479)
Q Consensus       215 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~-~~s~--~~~~~~~--~~f~~~~~~l~~~~~~i~~~i~  289 (479)
                      +++       +.+..+..++..+.+++|+++........... .+++  ..+.+..  .+++..+.++.......+.+++
T Consensus       198 ~~~-------~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~  270 (413)
T PRK15403        198 GAV-------PFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVA  270 (413)
T ss_pred             cCC-------CCChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            110       11112223444456677877665443333222 1111  1233332  2345556677777777788888


Q ss_pred             HHHhhhhccc
Q 011720          290 SVGIGYVMDF  299 (479)
Q Consensus       290 ~~~~g~l~Dr  299 (479)
                      +.+.+++.+|
T Consensus       271 ~~l~~~~~~~  280 (413)
T PRK15403        271 NAIVARFVKD  280 (413)
T ss_pred             HHHHHHHhcc
Confidence            8888887754

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.83  E-value=4.2e-18  Score=173.66  Aligned_cols=303  Identities=11%  Similarity=0.045  Sum_probs=187.7

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      .++...+...+.......+++++.|+++||+|||+.+.++.+++.+..  ..+. .+++.+.+++.|++.|++.+..++.
T Consensus        52 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~--~~~~-~~~~~~~l~~~r~l~G~~~g~~~~~  128 (394)
T PRK10213         52 ISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSC--LLVS-FANSFSLLLIGRACLGLALGGFWAM  128 (394)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHH--HHHH-HHChHHHHHHHHHHHHHhhHHHHHH
Confidence            455566667777888888999999999999999999999999887632  2222 3578999999999999999999999


Q ss_pred             hhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCccccc
Q 011720          136 QGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRVIR  214 (479)
Q Consensus       136 ~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~~r  214 (479)
                      ...++.|+.|+++|++++++++...++|..+|+.++..+..      .++|+ .+++..++..+..++.....|+.+. +
T Consensus       129 ~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~------~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~-~  201 (394)
T PRK10213        129 SASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE------LIGWRNVFNAAAVMGVLCIFWIIKSLPSLPG-E  201 (394)
T ss_pred             HHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hcCHHHHHHHHHHHHHHHHHHHHHHCCCCCc-c
Confidence            99999999999999999999999999999999999876642      13454 2333333333222222222333211 0


Q ss_pred             CCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhh---h-hhhccccccc-cccccchhhhHHHHHHHHHHHHH
Q 011720          215 DDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASN---F-FYSYQFNNVN-GLMFNLRTRGLNNVFYWGAQMLG  289 (479)
Q Consensus       215 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~---~-~~s~~~~~~~-~~~f~~~~~~l~~~~~~i~~~i~  289 (479)
                      +         ++. .   +..++.+++|+++......+...   + .+++..+.+. ..+++....++.....+++.+++
T Consensus       202 ~---------~~~-~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig  268 (394)
T PRK10213        202 P---------SHQ-K---QNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVG  268 (394)
T ss_pred             c---------ccc-h---hHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence            0         000 1   11234556676655433222111   1 1122112222 23456666677777889999999


Q ss_pred             HHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHH
Q 011720          290 SVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQ  369 (479)
Q Consensus       290 ~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  369 (479)
                      .++.+++.||  .+|+ ....+......+.+.+.     .   +           .   .+.+......+++|+.....+
T Consensus       269 ~~~~~~l~~r--~~~~-~l~~~~~~~~~~~~~l~-----~---~-----------~---~~~~~~~~~~~l~G~~~~~~~  323 (394)
T PRK10213        269 TSLSSFILKR--SVKL-ALAGAPLVLAVSALVLT-----L---W-----------G---SDKIVATGVAIIWGLTFALVP  323 (394)
T ss_pred             HHHHHHHHhc--cchh-HHHHHHHHHHHHHHHHH-----H---H-----------h---hhHHHHHHHHHHHHHHHHhhh
Confidence            9999999998  3333 22222221111111110     0   0           0   112233445566777776666


Q ss_pred             HHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          370 SMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       370 ~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      +.....+.+.. | +++++..+......++|..++..+.
T Consensus       324 ~~~~~~~~~~~-~-~~~~~~~~~~~~~~~lg~~~G~~l~  360 (394)
T PRK10213        324 VGWSTWITRSL-A-DQAEKAGSIQVAVIQLANTCGAAIG  360 (394)
T ss_pred             HHHHHHHHHHC-c-ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65555666666 3 4445666666666777777776554

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.83  E-value=3.7e-19  Score=178.98  Aligned_cols=322  Identities=15%  Similarity=0.091  Sum_probs=191.0

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      ++...+...++...+..+++++.|+++||+|||+.+.++.++..+....  .. .+++.+.+++.|++.|++.+...+..
T Consensus        28 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~g~~~~~~~~~~  104 (379)
T TIGR00881        28 SKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF--FG-FSTSLWVMAALWALNGIFQGMGWPPC  104 (379)
T ss_pred             CHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHH--HH-HhhhHHHHHHHHHHHHhhccccCCch
Confidence            3455666777888888999999999999999999999999887763332  22 35689999999999999999999999


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhh-HHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCccccc
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGG-LIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRVIR  214 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~-~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~~r  214 (479)
                      .+++.|+.|+++|++.+++......+|..+|+ ++...+...      .+|+ .+++..++..+..++.+++.|+++..+
T Consensus       105 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (379)
T TIGR00881       105 GRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL------YSWHWVFIVPGIIAIIVSLICFLLLRDSPQSC  178 (379)
T ss_pred             HHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc------CCchhHHHHHHHHHHHHHHHHheeeCCCcccc
Confidence            99999999999999999999999999999999 455544321      3343 233333334333333344444332111


Q ss_pred             ---C-CCCcccc-----cccCCHHHHHHH-HHHHhhchHHHHHHHHHHHhhhh---hhcccccccc--ccccchhhhHHH
Q 011720          215 ---D-DGTRCTN-----IKYSKVSTEAIE-ILKLFRNWKMLLLFPAAWASNFF---YSYQFNNVNG--LMFNLRTRGLNN  279 (479)
Q Consensus       215 ---~-d~~~~~~-----~~~~~~~~~~~~-~~~~~~~~r~ll~~~~~~~~~~~---~s~~~~~~~~--~~f~~~~~~l~~  279 (479)
                         + ++.+.+.     ++++...++.+. ..+.+++|+++.+....+.....   .....+.+..  .+++..+.++..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  258 (379)
T TIGR00881       179 GLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAF  258 (379)
T ss_pred             ccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence               0 0000000     000000011111 12234555554443322222111   1111133322  234555667777


Q ss_pred             HHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHH
Q 011720          280 VFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYF  359 (479)
Q Consensus       280 ~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (479)
                      ...+++.+++.++.+++.||.  .+|++..............+    ... . ..          ..  .+........+
T Consensus       259 ~~~~~~~~~~~~~~g~l~~r~--~~~~~~~~~~~~~~~~~~~~----~~~-~-~~----------~~--~~~~~~~~~~~  318 (379)
T TIGR00881       259 TLYELGGLVGTLLAGWLSDKL--FNGRRGPLAVFFMALIIVSL----LVY-W-LN----------PA--ANPLMDLICLF  318 (379)
T ss_pred             HHHHHHcchhHHHHHHHHHHH--cCCcchHHHHHHHHHHHHHH----HHH-h-cC----------cc--hhHHHHHHHHH
Confidence            788899999999999999983  23222222221111111111    000 0 00          01  11222333444


Q ss_pred             HHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          360 SYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       360 ~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      ..|+...+..+..+.+..+.. |+++|+++.++.+...++|..++..+.
T Consensus       319 ~~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~  366 (379)
T TIGR00881       319 ALGFLVYGPQMLIGVIASELA-PKKAAGTAAGFVGFFAYLGGILAGLPL  366 (379)
T ss_pred             HHHHHHhhhhHHHHHHHHHhc-CcchhHHHHHHHHHhhhhhhhhhhhhH
Confidence            455554455555566778888 788999999999998888887765543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.83  E-value=9e-19  Score=176.16  Aligned_cols=319  Identities=15%  Similarity=0.047  Sum_probs=180.7

Q ss_pred             CCChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccC-chhhHHHHHHHHhhhhhhhh
Q 011720           55 QLDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHH-DQTFAVVAGAVLGIGAGLLW  133 (479)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~-~~~~li~~R~i~G~g~g~~~  133 (479)
                      ..++...+...++...+..+++++.|+++||+|||+.++++.++..+....  .. .++ +++.++++|++.|++.+.. 
T Consensus        33 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~--~~-~~~~~~~~~~~~~~~~g~~~~~~-  108 (366)
T TIGR00886        33 GLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLW--AG-LAVQSYSVLLLLRLFIGIAGGSF-  108 (366)
T ss_pred             CCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH--HH-HHhhhHHHHHHHHHHHHHhchhh-
Confidence            345566677778888889999999999999999999999999887763322  22 346 8999999999999997654 


Q ss_pred             hhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhc----cC--CcccccchhHHHHHHHHHHHHHHHHhcc
Q 011720          134 AGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYH----RT--DAESVNDKTYIAFMCFMSAGAALSLAIL  207 (479)
Q Consensus       134 ~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~----~~--~~~~~~~~~~~i~~~l~~l~~~l~~~~~  207 (479)
                      +....+++|+.|+++|++.++++....++|..+|+.+...+...    .+  ...+|+|..++...++..+..++.+++.
T Consensus       109 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  188 (366)
T TIGR00886       109 ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVG  188 (366)
T ss_pred             HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhc
Confidence            55667889999999999999999988888888887776544321    00  0113444443332333333222323333


Q ss_pred             CCcccccCCCCcccc--cccCCHHHHHHHHHHHhhchHHHHHHHHHHHhh-hhh--hcccccccc--ccccchhhhHHHH
Q 011720          208 PPSRVIRDDGTRCTN--IKYSKVSTEAIEILKLFRNWKMLLLFPAAWASN-FFY--SYQFNNVNG--LMFNLRTRGLNNV  280 (479)
Q Consensus       208 ~~~~~~r~d~~~~~~--~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~-~~~--s~~~~~~~~--~~f~~~~~~l~~~  280 (479)
                      ++++.+++++.+.+.  ......++..++.++.+++|++++......... ..+  ...++.+..  .+++..+.++...
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  268 (366)
T TIGR00886       189 ADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYAS  268 (366)
T ss_pred             ccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            332221111111000  000000111223445556666554433322211 111  111133332  2345556676667


Q ss_pred             HHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHH
Q 011720          281 FYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFS  360 (479)
Q Consensus       281 ~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (479)
                      ...+..+++.++.|++.||  +|||+....+..... ....+    +.. . ..          .+  .+........++
T Consensus       269 ~~~~~~~~~~~~~g~l~~r--~g~~~~~~~~~~~~~-~~~~~----~~~-~-~~----------~~--~~~~~~~~~~~~  327 (366)
T TIGR00886       269 LGGLLGSLARPLGGAISDR--LGGARKLLMSFLGVA-MGAFL----VVL-G-LV----------SP--LSLAVFIVLFVA  327 (366)
T ss_pred             HHHHHHHHHhhccchHHHh--hccchhHHHHHHHHH-HHHHH----HHh-c-CC----------Cc--chHHHHHHHHHH
Confidence            7888889999999999999  678765554433221 11111    110 0 00          00  012222222222


Q ss_pred             HHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHH
Q 011720          361 YGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAG  400 (479)
Q Consensus       361 ~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g  400 (479)
                      ..+..+..++..+.+++++.  +++++++.|+.+...++|
T Consensus       328 ~~~~~g~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       328 LFFFSGAGNGSTFALVPHIF--RRATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHhccccchhhhcchhhc--hhhcccHHHHHHHhccCC
Confidence            33333333344666777887  468889988877766543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.83  E-value=2.9e-18  Score=172.96  Aligned_cols=306  Identities=14%  Similarity=0.054  Sum_probs=176.4

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      ++...+...+..+.++.+++++.|+++||+|||+.+..+...+..   +.......+|++.++++|+++|+|.+.. ...
T Consensus        24 s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~R~l~G~g~~~~-~~~   99 (368)
T TIGR00903        24 SKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAA---AAGRLLDPFNYEWLLACQLLAALGQPFL-LNA   99 (368)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH---HHHHHHHhccHHHHHHHHHHHHhHhHHH-HHH
Confidence            355566677888899999999999999999999876655444333   2222112368999999999999999974 445


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchh-HHHHHHHHHHHHHHHHhccCCcccccC
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKT-YIAFMCFMSAGAALSLAILPPSRVIRD  215 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~-~~i~~~l~~l~~~l~~~~~~~~~~~r~  215 (479)
                      ...++|+.|+++|++++++......+|.++++.++..+..      .++|+. +.+..++..+..++..+..||++..++
T Consensus       100 ~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~------~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~  173 (368)
T TIGR00903       100 FAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT------AGGLQLLIIPIAAVAAAGIILVLAALPALPFQAA  173 (368)
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------ccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence            5566899999999999999999999999999988877642      245653 333344444444444445565442211


Q ss_pred             CCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhh-hh---hcccccccc-ccccchhhhHHHHHHHHHHHHHH
Q 011720          216 DGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNF-FY---SYQFNNVNG-LMFNLRTRGLNNVFYWGAQMLGS  290 (479)
Q Consensus       216 d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~-~~---s~~~~~~~~-~~f~~~~~~l~~~~~~i~~~i~~  290 (479)
                      +  +      .+..+..++..+.+++|+++.+....+.... .+   ++. ++++. .+++.. .+.......+   .+.
T Consensus       174 ~--~------~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wl-p~~L~~~g~s~~-~~~~~~l~~~---~g~  240 (368)
T TIGR00903       174 E--G------FGFKDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWL-EAALRPAGLEDI-AGDAVALAIL---AGL  240 (368)
T ss_pred             C--C------cchHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCChH-HHHHHHHHHH---HHH
Confidence            1  0      0001112333455667777665544333322 11   222 44442 234432 3333323333   333


Q ss_pred             HHhhhhcccc-ccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHH
Q 011720          291 VGIGYVMDFS-FQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQ  369 (479)
Q Consensus       291 ~~~g~l~Dr~-~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  369 (479)
                      +..+++.||. +.+||+........+  .....    +.. . +.          .+  . . ....+..+.+++.....
T Consensus       241 ~g~~~~~d~~~r~~~r~~~~~~~~~~--~a~~~----~~~-~-~~----------~~--~-~-~~~~~~~l~~~~~~~~~  298 (368)
T TIGR00903       241 IGVAVIPDRVARAGLRSIYIRAAALL--IAAFF----LAL-A-FE----------LN--R-L-ALFAFIGIAGLLMLPAY  298 (368)
T ss_pred             HHHHHhhHHhhhhhhHHHHHHHHHHH--HHHHH----HHH-H-Hc----------cc--c-H-HHHHHHHHHHHhhhhhH
Confidence            3346777873 123333222111111  11011    111 0 01          01  1 1 12223333444444444


Q ss_pred             HHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          370 SMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       370 ~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      +..+.+.+|.+ |++.|+++.|+.+....++...+....
T Consensus       299 ~~~~~~~~~~~-p~~~rgt~~G~~~~~g~~~~~~~~~~~  336 (368)
T TIGR00903       299 AIIMDWIGKFC-DKELHGKAAGAIGFTSRAISVALALAA  336 (368)
T ss_pred             HHHHHHHHHhc-chhhcCcccchhhHHHHHHHHHHHHHH
Confidence            55777889999 889999999999999988886665443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.82  E-value=4.7e-18  Score=175.53  Aligned_cols=290  Identities=13%  Similarity=0.058  Sum_probs=164.1

Q ss_pred             HHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchh--------hHHHHHHHHhhhhhhhhhhhhhhhh
Q 011720           70 TTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQT--------FAVVAGAVLGIGAGLLWAGQGAIMT  141 (479)
Q Consensus        70 ~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~--------~li~~R~i~G~g~g~~~~~~~~~i~  141 (479)
                      ....+++++.|+++||+|||+.++++.+++.+...  ++. .+++.+        +++++|+++|++.|..++....+++
T Consensus        67 l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~--l~~-~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~  143 (434)
T PRK15075         67 LMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTL--LIA-FVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLA  143 (434)
T ss_pred             HHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHH--HHH-hCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHH
Confidence            33457889999999999999999999998877333  332 356665        4689999999999999888889999


Q ss_pred             cCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccC--CcccccchhHHHHHHHHHHHHHHHHhcc--CCcccccCCC
Q 011720          142 SYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRT--DAESVNDKTYIAFMCFMSAGAALSLAIL--PPSRVIRDDG  217 (479)
Q Consensus       142 e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~--~~~~~~~~~~~i~~~l~~l~~~l~~~~~--~~~~~~r~d~  217 (479)
                      |+.|+++||+.++++....++|..+|+.++..+...-.  ....++|+..+.+..+.   .++.++++  +|+..+..+ 
T Consensus       144 e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~---~~~~~~~~~~~~e~~~~~~-  219 (434)
T PRK15075        144 EIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLI---VPFIFLIRRSLEETEEFLA-  219 (434)
T ss_pred             hhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHH---HHHHHHHHHhcCCCHHHHH-
Confidence            99999999999999998888888777776665421100  00135565332222111   11112221  121100000 


Q ss_pred             CcccccccCCHHHHHHHHHHHhhchHHHHHH-HHHHHhhhh---hhcccccccc--ccccchhhhHHHHHHHHHHHHHHH
Q 011720          218 TRCTNIKYSKVSTEAIEILKLFRNWKMLLLF-PAAWASNFF---YSYQFNNVNG--LMFNLRTRGLNNVFYWGAQMLGSV  291 (479)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~-~~~~~~~~~---~s~~~~~~~~--~~f~~~~~~l~~~~~~i~~~i~~~  291 (479)
                          .+++.+.++.++.   ..++++.++.. ...+.....   .....+.+..  .+++..+.++.....+++.+++.+
T Consensus       220 ----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  292 (434)
T PRK15075        220 ----RKHRPSMREIFRS---LAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLP  292 (434)
T ss_pred             ----hhhccccccHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence                0001111111121   12333333221 111111111   1111244432  245555667777788899999999


Q ss_pred             HhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHH
Q 011720          292 GIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSM  371 (479)
Q Consensus       292 ~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  371 (479)
                      +.|++.||  +|||+....+...........    +.. .  .          .+  +.........++.+++.+..++.
T Consensus       293 ~~g~l~Dr--~g~r~~~~~~~~~~~~~~~~~----~~~-~--~----------~~--~~~~~~~~~~~~~~~~~g~~~~~  351 (434)
T PRK15075        293 IGGALSDR--IGRRPVLIAFTVLAILTAYPA----LSW-L--V----------AA--PSFARMLAVELWLSFLYGSYNGA  351 (434)
T ss_pred             HHHHHHHH--hcchHHHHHHHHHHHHHHHHH----HHH-H--H----------cC--CchHHHHHHHHHHHHHHHHHHhh
Confidence            99999999  678876554422211111000    000 0  0          01  11112222233344555566665


Q ss_pred             HHHHHHHhcCCchhhhHHHHHHHH
Q 011720          372 VYWVIGALADDSETLSRYTGFYKG  395 (479)
Q Consensus       372 ~~~~~~~i~~~~~~r~~~~~~~~~  395 (479)
                      .+.++.|.+ |++.|+++.++...
T Consensus       352 ~~~~~~e~~-p~~~rg~~~g~~~~  374 (434)
T PRK15075        352 MVVALTEVM-PAEVRTAGFSLAYS  374 (434)
T ss_pred             HHHHHHHHC-CCCccchheeHHHH
Confidence            667788999 78889999887544

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.82  E-value=3e-19  Score=184.13  Aligned_cols=240  Identities=13%  Similarity=0.111  Sum_probs=170.1

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhh
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQG  137 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~  137 (479)
                      .+.-+...+++|.+++++.++++.+.||+.-.+.+....+++.++...  .. ..+|.+.+++.|+++|+..+..|++..
T Consensus        80 ~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~--~~-~~~s~~~~ialr~llGl~es~~wP~~~  156 (495)
T KOG2533|consen   80 GNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFL--TA-AVHSFPGLIALRFLLGLFESGGWPGVV  156 (495)
T ss_pred             hhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHH--HH-HHhhhHHHHHHHHHHHHHhcccchHHH
Confidence            345667788999999999999999999999888888887777764322  22 247899999999999999999999999


Q ss_pred             hhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCcccc---
Q 011720          138 AIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRVI---  213 (479)
Q Consensus       138 ~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~~---  213 (479)
                      .+++.+..+++||+.+|++++..++|.++|+++++++..........+|+ .|++..++.++..++.+++.|..+.+   
T Consensus       157 ~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~f  236 (495)
T KOG2533|consen  157 AILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWF  236 (495)
T ss_pred             HHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccc
Confidence            99999999999999999999999999999999999864322111223443 45555566665555556666643320   


Q ss_pred             cCCCC------cccccccCC--HHHHHHHHHHHhhchHHHHHHHHHHHhhhh---hhccccccccc--cccchhhhHHHH
Q 011720          214 RDDGT------RCTNIKYSK--VSTEAIEILKLFRNWKMLLLFPAAWASNFF---YSYQFNNVNGL--MFNLRTRGLNNV  280 (479)
Q Consensus       214 r~d~~------~~~~~~~~~--~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~---~s~~~~~~~~~--~f~~~~~~l~~~  280 (479)
                      .+|++      +.+.+.+..  -+.+.++..+.+++|+++......+++...   .++.++.++..  +++..+..+.+.
T Consensus       237 l~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~  316 (495)
T KOG2533|consen  237 LTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLST  316 (495)
T ss_pred             cchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccc
Confidence            11111      011000000  002356667788999998877766665441   12222333322  356667778888


Q ss_pred             HHHHHHHHHHHHhhhhcccc
Q 011720          281 FYWGAQMLGSVGIGYVMDFS  300 (479)
Q Consensus       281 ~~~i~~~i~~~~~g~l~Dr~  300 (479)
                      .+.++.+++.++.|+++||.
T Consensus       317 ~~~~~g~v~~i~ag~lsdr~  336 (495)
T KOG2533|consen  317 PYDVGGIVGLILAGYLSDRL  336 (495)
T ss_pred             hHHhhhHHHHHHHHHHHHHH
Confidence            99999999999999999994

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.82  E-value=1.2e-17  Score=168.90  Aligned_cols=239  Identities=12%  Similarity=0.039  Sum_probs=158.4

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      ++...+...+....+..++.++.|+++||+|||+.+.++.++..+......   .+++.+.+++.|++.|++.+...+..
T Consensus        24 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~  100 (377)
T PRK11102         24 SAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACA---LAQTIDQLIYMRFLHGLAAAAASVVI  100 (377)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHH---HHccHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566667788888899999999999999999999999988776333322   34688999999999999999988888


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCcccccC
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRVIRD  215 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~~r~  215 (479)
                      ..++.|+.|+++|++.+++.+....+|..+|+.++..+...      ++|+ .+.+...+..+..++..+..|+++.++ 
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  173 (377)
T PRK11102        101 NALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW------FSWHAIFWVLALAAILAAALVFFFIPETLPKE-  173 (377)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cChHHHHHHHHHHHHHHHHHHHHhCCccCccc-
Confidence            89999999999999999999999999999999887755321      3343 333334444444333334444432111 


Q ss_pred             CCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhh-hhhcc--ccccc-c-ccccchhhhHHHHHHHHHHHHHH
Q 011720          216 DGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNF-FYSYQ--FNNVN-G-LMFNLRTRGLNNVFYWGAQMLGS  290 (479)
Q Consensus       216 d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~-~~s~~--~~~~~-~-~~f~~~~~~l~~~~~~i~~~i~~  290 (479)
                      ++      ++.+.++..++..+.+++|+.+........... .+.+.  .+.+. . .+++..+.++......++.+++.
T Consensus       174 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~  247 (377)
T PRK11102        174 RR------QPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMT  247 (377)
T ss_pred             cc------CCCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence            10      011222233333445566665543332222111 11111  01111 1 24455667777778889999999


Q ss_pred             HHhhhhccccccCccceeeehhh
Q 011720          291 VGIGYVMDFSFQSLRTRGLVGIG  313 (479)
Q Consensus       291 ~~~g~l~Dr~~~gRr~~~~~g~~  313 (479)
                      ++.+++.||  +|||+....+..
T Consensus       248 ~~~g~l~~r--~g~~~~~~~~~~  268 (377)
T PRK11102        248 IINSRFVRR--VGALNMLRFGLW  268 (377)
T ss_pred             HHHHHHHHH--hCHHHHHHHHHH
Confidence            999999999  678886665544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.82  E-value=7e-18  Score=171.20  Aligned_cols=298  Identities=12%  Similarity=0.052  Sum_probs=178.4

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      ++...+...+....+..+++++.|+++||+|||+.+.++.+++.+....  .. .++|.+.++++|+++|++.+..++..
T Consensus        39 s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~--~~-~~~~~~~l~~~~~l~G~~~~~~~~~~  115 (381)
T PRK03633         39 PTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAG--LG-LMVGFWSWLAWRFVAGIGCAMIWVVV  115 (381)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777888888899999999999999999999999998887763322  22 35789999999999999999988776


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCcccccCC
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRVIRDD  216 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~~r~d  216 (479)
                      ...+.+..++++||+.++++....++|..+|+.+...+...      ..+..++....+. ...+..++.+.+++..++ 
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-  187 (381)
T PRK03633        116 ESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE------LMSVLPWVTGLVL-AAILPLLFTRILNQQAEN-  187 (381)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------ccchHHHHHHHHH-HHHHHHHHhcccCCCCCC-
Confidence            66777888899999999999999999999999987755311      1122222211111 111111222212111100 


Q ss_pred             CCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhh----hhhcccccccc-ccccchhhhHHHHHHHHHHHHHHH
Q 011720          217 GTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNF----FYSYQFNNVNG-LMFNLRTRGLNNVFYWGAQMLGSV  291 (479)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~----~~s~~~~~~~~-~~f~~~~~~l~~~~~~i~~~i~~~  291 (479)
                            +++++    .+   +.+++|+.++.....+..+.    .+++. +.+.. .+++....++......++.+++.+
T Consensus       188 ------~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~  253 (381)
T PRK03633        188 ------HDSTS----IW---PMLKLRQARLGVNGCIISGIVLGSLYGLM-PLYLNHQGMSDASIGFWMALLVSAGILGQW  253 (381)
T ss_pred             ------CCCCC----HH---HHHHhcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHh
Confidence                  01111    11   22334443332211111111    12222 33332 244555566666677888899999


Q ss_pred             HhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHH
Q 011720          292 GIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSM  371 (479)
Q Consensus       292 ~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  371 (479)
                      ..|++.||  ++||+....+..... +..+..     .    .           .  ...   ....++.++......|.
T Consensus       254 ~~g~l~dr--~~~~~~l~~~~~~~~-~~~~~~-----~----~-----------~--~~~---~~~~~l~g~~~~~~~p~  305 (381)
T PRK03633        254 PIGRLADR--FGRLLVLRVQVFVVI-LGSIAM-----L----S-----------Q--AAM---APALFILGAAGFTLYPV  305 (381)
T ss_pred             hhHHHHHH--cCcHHHHHHHHHHHH-HHHHHH-----h----h-----------h--HHH---HHHHHHHHHHHHhHHHH
Confidence            99999999  678875554433321 111110     0    0           0  111   11223344444455565


Q ss_pred             HHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          372 VYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       372 ~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      ......+.. |+++++...+.+....++|.+++..+.
T Consensus       306 ~~~~~~~~~-~~~~~~~~~~~~~~~~~lG~~igp~~~  341 (381)
T PRK03633        306 AMAWACEKV-EHHELVAMNQALLLSYTVGSLLGPSFT  341 (381)
T ss_pred             HHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666777 566666666777666777777776554

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.82  E-value=7.4e-18  Score=171.77  Aligned_cols=307  Identities=9%  Similarity=0.030  Sum_probs=183.0

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhh
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQG  137 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~  137 (479)
                      +.......+.+...+++..+++|+++||+|||+++.++.+++.+....+..   +.+   .++.|+++|++.+...++..
T Consensus        37 ~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~---~~~---~~~~r~l~G~~~a~~~pa~~  110 (393)
T PRK11195         37 DWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLF---GIH---PLLAYGLVGIGAAAYSPAKY  110 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHHHH
Confidence            444556667777888999999999999999999999999988763333222   122   27899999999999999999


Q ss_pred             hhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhH-HHHHHHHHHHHHHHHhccCCcccccCC
Q 011720          138 AIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTY-IAFMCFMSAGAALSLAILPPSRVIRDD  216 (479)
Q Consensus       138 ~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~-~i~~~l~~l~~~l~~~~~~~~~~~r~d  216 (479)
                      +++.|+.|+++|++++++.....++|.++|+.++..+..       +.|... .+...+..+. .+..+..|+++.+++.
T Consensus       111 a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~-------~~~~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~~  182 (393)
T PRK11195        111 GILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD-------PHAEAALAVCALIYLLA-ALFNLFIPRLGARRPG  182 (393)
T ss_pred             HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH-HHHHhcCCCCcccccc
Confidence            999999999999999999999999999999999876632       113222 2222111222 2223344443321110


Q ss_pred             CCcccccccCCHHHHHHHHHH-HhhchHHHHHHHH--HHH-hhhhhhcccccccc--ccccchhhhHHHHHHHHHHHHHH
Q 011720          217 GTRCTNIKYSKVSTEAIEILK-LFRNWKMLLLFPA--AWA-SNFFYSYQFNNVNG--LMFNLRTRGLNNVFYWGAQMLGS  290 (479)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~-~~~~~r~ll~~~~--~~~-~~~~~s~~~~~~~~--~~f~~~~~~l~~~~~~i~~~i~~  290 (479)
                       .+   .+.....+++++.++ .+++|.+......  .++ ......+.++.+.+  .+++..+.++.....+++.++++
T Consensus       183 -~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~  258 (393)
T PRK11195        183 -QS---WNPIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGA  258 (393)
T ss_pred             -cC---CCHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Confidence             00   000111122222222 2344433221111  111 11111111122222  23455567888888999999999


Q ss_pred             HHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHH
Q 011720          291 VGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQS  370 (479)
Q Consensus       291 ~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  370 (479)
                      ++.+++.||  .++|+....+. .+.   .....  +..               .   ...+......++.|++.+..++
T Consensus       259 ~~~~~l~~~--~~~~~~~~~g~-~~~---~~~~~--~~~---------------~---~~~~~~~~~~~~~G~~~g~~~~  312 (393)
T PRK11195        259 GAAARLVTL--ETVLRVLPAGI-LMG---LVVLL--MAL---------------Q---HSLLPAYPLLILIGALGGFFVV  312 (393)
T ss_pred             HHHHHHhcC--CcccchHHHHH-HHH---HHHHH--HHH---------------H---hHHHHHHHHHHHHHHhhhhhhh
Confidence            999999988  45555433332 111   11100  100               0   1122233445566777666666


Q ss_pred             HHHHHHHHhcCCchh-hhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          371 MVYWVIGALADDSET-LSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       371 ~~~~~~~~i~~~~~~-r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      .....+.+.. |++. ++++.++.+..++++..++..+..
T Consensus       313 ~~~~~~q~~~-~~~~~~g~~~a~~~~~~~~~~~~~~~~~~  351 (393)
T PRK11195        313 PMNALLQHRG-HVLVGAGHSIAVQNFNENLAMLLMLGLYS  351 (393)
T ss_pred             hHHHHHHhhC-cccccchhHHHHHhHHHHHHHHHHHHHHH
Confidence            5555665654 4443 689999999999999888877653

>PRK11043 putative transporter; Provisional

Probab=99.81  E-value=3.2e-17  Score=167.43  Aligned_cols=309  Identities=14%  Similarity=0.079  Sum_probs=186.2

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      .++...+...++...+..++++++|+++||+|||+.+.++.++..+.  ..... .+++.+.+++.|++.|++.+...+.
T Consensus        38 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~--~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~  114 (401)
T PRK11043         38 TSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALG--SLGML-WVESAAQLLVLRFVQAVGVCSAAVI  114 (401)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHH--HHHHH-HhcCHHHHHHHHHHHHhhhHHHHHH
Confidence            44566677788888889999999999999999999999998877652  22222 3578999999999999999887777


Q ss_pred             hhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCccccc
Q 011720          136 QGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRVIR  214 (479)
Q Consensus       136 ~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~~r  214 (479)
                      ...++.|..++++|++..+..+....+|..+|+.++..+..      ..+|+ .+.+..++.++..++.++++ |++.++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  187 (401)
T PRK11043        115 WQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN------HFGWQAIFATLFAITLLLILPTLRLK-PSKKAR  187 (401)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCChHHHHHHHHHHHHHHHHHHHHcC-CCCCcc
Confidence            77888999999999999999988888999999988775532      13454 23333333444333333333 322111


Q ss_pred             CCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHH-hhhhhhc--ccccccc-ccccchhhhHHHHHHHHHHHHHH
Q 011720          215 DDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWA-SNFFYSY--QFNNVNG-LMFNLRTRGLNNVFYWGAQMLGS  290 (479)
Q Consensus       215 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~-~~~~~s~--~~~~~~~-~~f~~~~~~l~~~~~~i~~~i~~  290 (479)
                      +         ++.   +.++..+.+++|+.+........ ...++.+  ..+.+.. .+++....++......++.++++
T Consensus       188 ~---------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~  255 (401)
T PRK11043        188 K---------QSQ---DALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGG  255 (401)
T ss_pred             c---------cch---HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence            1         000   11222334455554332221111 1111111  1122221 34455566776677788888999


Q ss_pred             HHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHH
Q 011720          291 VGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQS  370 (479)
Q Consensus       291 ~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  370 (479)
                      ++.+++.||  ++||+....+.....+.....+.  ...   ..           .  +........+.+.++..+...+
T Consensus       256 ~~~~~l~~r--~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~-----------~--~~~~~~~~~~~~~~~~~~~~~~  315 (401)
T PRK11043        256 YGCRAALQK--WGGEQLLPWLLVLFAVSVIAIWL--ASL---LS-----------H--PSLVPLLIPFCVMAAANGAIYP  315 (401)
T ss_pred             HHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHH--HHH---hc-----------c--CcHHHHHHHHHHHHHHHHHHHH
Confidence            999999999  56776544433322211111111  100   00           1  1222333444556666666666


Q ss_pred             HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          371 MVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       371 ~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      .......+..  +++++++.++++..+..+...+..+.
T Consensus       316 ~~~~~~~~~~--~~~~g~~~g~~~~~~~~~~~~~~~~~  351 (401)
T PRK11043        316 IVVAQALRPF--PQATGKAAALQNTLQLGLCFLASLLV  351 (401)
T ss_pred             HHHHHHhhhC--cccChHHHHHHHHHHHHHHHHHHHHH
Confidence            5554444545  46789999999988776655554443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.81  E-value=3.2e-18  Score=173.07  Aligned_cols=308  Identities=15%  Similarity=0.086  Sum_probs=174.4

Q ss_pred             HHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchh--------hHHHHHHHHhhhhhhhhhhhhhh
Q 011720           68 LYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQT--------FAVVAGAVLGIGAGLLWAGQGAI  139 (479)
Q Consensus        68 ~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~--------~li~~R~i~G~g~g~~~~~~~~~  139 (479)
                      .+....+++++.|+++||+|||+++.++.+++.+.  ..+.. .+++.+        .++++|+++|++.+..++....+
T Consensus        44 ~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~  120 (394)
T TIGR00883        44 GFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIG--TLLIG-LLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALY  120 (394)
T ss_pred             HHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHH--HHHHh-hCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHH
Confidence            33444578899999999999999999999887763  32222 244543        58999999999999999999999


Q ss_pred             hhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCC--cccccchhHH-HHHHHHHHHHHHHHhccCCcccccCC
Q 011720          140 MTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTD--AESVNDKTYI-AFMCFMSAGAALSLAILPPSRVIRDD  216 (479)
Q Consensus       140 i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~--~~~~~~~~~~-i~~~l~~l~~~l~~~~~~~~~~~r~d  216 (479)
                      +.|+.|+++|++..++......+|.++|+.+...+......  ...++|+... +..++..+...+ ....||++..+++
T Consensus       121 ~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  199 (394)
T TIGR00883       121 LAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL-RRNLEETPVFEKA  199 (394)
T ss_pred             hhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH-HHhcCCChhHHHH
Confidence            99999999999999999999999999998877654321000  0134565332 222222222111 1222332211110


Q ss_pred             CCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhhhh---hcccccccc--ccccchhhhHHHHHHHHHHHHHHH
Q 011720          217 GTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFY---SYQFNNVNG--LMFNLRTRGLNNVFYWGAQMLGSV  291 (479)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~~---s~~~~~~~~--~~f~~~~~~l~~~~~~i~~~i~~~  291 (479)
                      +.+. .+.+.+    .++.++. ++++++......+.....+   ....+.+..  .+.+..+.+.......++.+++.+
T Consensus       200 ~~~~-~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  273 (394)
T TIGR00883       200 QEKH-KKKRGP----IRETLTK-HRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIP  273 (394)
T ss_pred             Hhcc-ccccCC----HHHHHHh-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH
Confidence            0000 001111    2222221 1112333332222222211   111133321  223444556666778888999999


Q ss_pred             HhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHH
Q 011720          292 GIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSM  371 (479)
Q Consensus       292 ~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  371 (479)
                      +.|++.||  +|||+....+............   ...    .          ..  ..........+..++..+..++.
T Consensus       274 ~~g~l~dr--~g~~~~~~~~~~~~~~~~~~~~---~~~----~----------~~--~~~~~~~~~~~~~g~~~~~~~~~  332 (394)
T TIGR00883       274 LSGALSDR--IGRRPVLIIFTVLAALLAVPLL---MAL----L----------DS--GSFTLFFFLVLGLALIGGMYTGP  332 (394)
T ss_pred             HHHHHHHH--hchHHHHHHHHHHHHHHHHHHH---HHH----h----------cC--CchHHHHHHHHHHHHHHHHHhhh
Confidence            99999999  6788754433222111111111   100    0          01  12233344455667777677777


Q ss_pred             HHHHHHHhcCCchhhhHHHHHH-HHHHHHHHHHHhhh
Q 011720          372 VYWVIGALADDSETLSRYTGFY-KGVQSAGAAVAWQV  407 (479)
Q Consensus       372 ~~~~~~~i~~~~~~r~~~~~~~-~~~~~~g~~i~~~~  407 (479)
                      .+.++.|.+ |+++|+++.++. .....+|..++..+
T Consensus       333 ~~~~~~~~~-p~~~~~~~~~~~~~~~~~~g~~~~p~~  368 (394)
T TIGR00883       333 MGSFLPELF-PTEVRYTGASLAYNLAGAIFGGFAPYI  368 (394)
T ss_pred             HHHHHHHhC-CccceeeEeeehhHhHHHHHhhHHHHH
Confidence            788899999 778888888763 33344555444443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.81  E-value=9.1e-18  Score=171.49  Aligned_cols=301  Identities=10%  Similarity=0.033  Sum_probs=183.2

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhh
Q 011720           62 NNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMT  141 (479)
Q Consensus        62 ~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~  141 (479)
                      +...++.+....+++++.|+++||+|||+.+.++.+...+....  .. ..++.+.+++.|++.|++.+. .+....++.
T Consensus        57 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~  132 (408)
T PRK09874         57 GLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVL--MG-LAQNIWQFLILRALLGLLGGF-VPNANALIA  132 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHH--HH-HHhhHHHHHHHHHHHHHhhhh-HHhHHHHHH
Confidence            45566777778889999999999999999999988876663222  22 346789999999999998765 455667788


Q ss_pred             cCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCcccccCCCCcc
Q 011720          142 SYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRVIRDDGTRC  220 (479)
Q Consensus       142 e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~~r~d~~~~  220 (479)
                      |..|+++|++.++++.....+|..+|+.+...+...      .+|+ .+++..++.++..++..++.|+++...+  +  
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--  202 (408)
T PRK09874        133 TQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS------YGLRPVFFITASVLFLCFLVTLFCIRENFQPVS--K--  202 (408)
T ss_pred             HhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCHHHHHHHHHHHHHHHHHHHHHHhccCccccc--c--
Confidence            889999999999999999999999999887765321      2343 3444344444443333344443221100  0  


Q ss_pred             cccccCCHHHHHHHHHHHhhchHHHHHH-HHHHHhhhhhhcc---ccccccc-cccch----hhhHHHHHHHHHHHHHHH
Q 011720          221 TNIKYSKVSTEAIEILKLFRNWKMLLLF-PAAWASNFFYSYQ---FNNVNGL-MFNLR----TRGLNNVFYWGAQMLGSV  291 (479)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~r~ll~~-~~~~~~~~~~s~~---~~~~~~~-~f~~~----~~~l~~~~~~i~~~i~~~  291 (479)
                          ++  ..+.++.++.+++++.++.. ...+..+......   ++.+... ..+..    ..++.....+++.+++.+
T Consensus       203 ----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~  276 (408)
T PRK09874        203 ----KE--MLHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAP  276 (408)
T ss_pred             ----hh--hhHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence                00  11223344555666643322 1111111111110   1222111 11111    123444456788888889


Q ss_pred             HhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHH
Q 011720          292 GIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSM  371 (479)
Q Consensus       292 ~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  371 (479)
                      ..|++.||  +|||+....+..... +....    ..    +           .   .......+..++.|++.+...+.
T Consensus       277 ~~g~l~dr--~g~~~~~~~~~~~~~-~~~~~----~~----~-----------~---~~~~~~~~~~~~~g~~~~~~~~~  331 (408)
T PRK09874        277 RLGKLGDR--IGPEKILITALIFSV-LLLIP----MS----F-----------V---QTPLQLGILRFLLGAADGALLPA  331 (408)
T ss_pred             HHHHHHhc--cccchhHHHHHHHHH-HHHHH----HH----H-----------h---ccHHHHHHHHHHHHhhhHhhHHH
Confidence            99999999  678876655433221 11111    10    0           0   11223344556678888777776


Q ss_pred             HHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          372 VYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       372 ~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      ....+.+.. +++.+++.++++...+.+|..++..+.
T Consensus       332 ~~~~~~~~~-~~~~~g~~~~~~~~~~~~g~~~gp~~~  367 (408)
T PRK09874        332 VQTLLVYNS-SNQIAGRIFSYNQSFRDIGNVTGPLMG  367 (408)
T ss_pred             HHHHHHHhC-CcccceeeehHHHHHHHHHHHhhHHHH
Confidence            666666666 677889999999998888888886665

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.81  E-value=5.5e-18  Score=177.00  Aligned_cols=239  Identities=13%  Similarity=-0.016  Sum_probs=141.2

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      ++...+...+....+..+++++.|+++||+|||+.+.++.+++.+...  ... .+++.+.+++.|++.|++.+... ..
T Consensus        69 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~--~~~-~~~s~~~l~~~r~l~G~~~~~~~-~~  144 (476)
T PLN00028         69 TKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVF--CMS-LVSSATGFIAVRFFIGFSLATFV-SC  144 (476)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH--HHH-HhcCHHHHHHHHHHHHHHHHhhH-HH
Confidence            344444556667777888999999999999999999998887766322  222 35688899999999999998654 34


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhc--cC-Ccccccch-hHHHHHHHHHHHHHHHHhccCCccc
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYH--RT-DAESVNDK-TYIAFMCFMSAGAALSLAILPPSRV  212 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~--~~-~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~  212 (479)
                      ..+++|+.|+++||+++|+.....++|..+|+.+...+...  .. .....+|+ .+++..++.++..++.+++.++.+.
T Consensus       145 ~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~  224 (476)
T PLN00028        145 QYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD  224 (476)
T ss_pred             HHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC
Confidence            45788999999999999999887777877776655332110  00 00112454 3333333343333333333322221


Q ss_pred             ccCCCCcccc-cccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhh-h---hhcccccccc--ccccchhhhHHHHHHHHH
Q 011720          213 IRDDGTRCTN-IKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNF-F---YSYQFNNVNG--LMFNLRTRGLNNVFYWGA  285 (479)
Q Consensus       213 ~r~d~~~~~~-~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~-~---~s~~~~~~~~--~~f~~~~~~l~~~~~~i~  285 (479)
                      ++.++.+.+. .++++..   +...+.+++++.+++....+.... .   .++. +.+..  .+++..+.++.....+++
T Consensus       225 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~l~~~~g~s~~~a~~~~~~~~~~  300 (476)
T PLN00028        225 GNYRELKKSGTMPKDSFS---KVLRYGVTNYRTWILALTYGYSFGVELTMDNII-AEYFYDRFGLSLETAGAIAASFGLM  300 (476)
T ss_pred             CchhhHHhcCccccccHH---HHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHH-HHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            1100000000 0111111   222334566776554443322211 1   1111 33321  345666677777788999


Q ss_pred             HHHHHHHhhhhccccccCcc
Q 011720          286 QMLGSVGIGYVMDFSFQSLR  305 (479)
Q Consensus       286 ~~i~~~~~g~l~Dr~~~gRr  305 (479)
                      .+++.++.|+++||  ++||
T Consensus       301 ~~ig~~~~G~lsDr--~~~r  318 (476)
T PLN00028        301 NLFARPAGGYLSDV--AARR  318 (476)
T ss_pred             HHHHHhhhHHHHHH--HHHh
Confidence            99999999999999  4554

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.81  E-value=1.4e-17  Score=169.07  Aligned_cols=230  Identities=13%  Similarity=0.075  Sum_probs=154.3

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      +....+...+....+..+++++.|++.||+|||+++.++.++..+  +..+.. .++|.+.+++.|++.|++.+...+..
T Consensus        36 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~--~~~l~~-~~~~~~~l~~~r~l~G~~~~~~~~~~  112 (382)
T PRK10091         36 SIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVI--GNAMFT-LSSSYLMLAIGRLVSGFPHGAFFGVG  112 (382)
T ss_pred             CHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHH--HHHHHH-HhCcHHHHHHHHHHHHhhhHHHHHHH
Confidence            445566778888899999999999999999999999999998776  333332 46889999999999999999988888


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCcccccC
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRVIRD  215 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~~r~  215 (479)
                      ..++.|+.|+++|++.++++.....+|..+|+.++..+..      ..+|+ .|.+..++..+..+...+..|+.+. ++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~------~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~-~~  185 (382)
T PRK10091        113 AIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ------EFSWRYTFLLIAVFNIAVLASIYFWVPDIRD-EA  185 (382)
T ss_pred             HHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh------hccHHHHHHHHHHHHHHHHHHHHHhCCCCCc-cc
Confidence            8889999999999999999999999999999888765532      13444 3333333333333333333444221 11


Q ss_pred             CCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhh--h--hhhcccccccc--ccccchhhhHHHHHHHHHHHHH
Q 011720          216 DGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASN--F--FYSYQFNNVNG--LMFNLRTRGLNNVFYWGAQMLG  289 (479)
Q Consensus       216 d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~--~--~~s~~~~~~~~--~~f~~~~~~l~~~~~~i~~~i~  289 (479)
                               +.+.+    +.++.+++++.+..........  .  ..++. ..+..  .+++..+.++.....+++.+++
T Consensus       186 ---------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~~~~~~~~~~~~~ig  251 (382)
T PRK10091        186 ---------KGGLR----EQFHFLRSPAPWLIFAATMFGNAGVFAWFSYI-KPYMMFISGFSETSMTFIMMLVGLGMVLG  251 (382)
T ss_pred             ---------ccCHH----HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence                     01111    1233445555544332222211  1  01222 22221  3456666777778889999999


Q ss_pred             HHHhhhhccccccCccceeeehh
Q 011720          290 SVGIGYVMDFSFQSLRTRGLVGI  312 (479)
Q Consensus       290 ~~~~g~l~Dr~~~gRr~~~~~g~  312 (479)
                      .++.+++.||  +|||+....+.
T Consensus       252 ~~~~g~l~~r--~~~~~~~~~~~  272 (382)
T PRK10091        252 NLLSGRLSGR--YSPLRIAAVTD  272 (382)
T ss_pred             hHHHheeccc--cCchhHHHHHH
Confidence            9999999999  67877655543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.81  E-value=3e-17  Score=167.06  Aligned_cols=235  Identities=15%  Similarity=0.097  Sum_probs=152.9

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      ++...+...+....+..+++++.|+++||+|||+.+.++.+.+.+....  .. .+++.+.++++|++.|++.+..++..
T Consensus        36 s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~--~~-~~~~~~~~~~~~~l~g~~~~~~~~~~  112 (392)
T PRK10473         36 SEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL--CS-LAETSSLFLAGRFLQGIGAGCCYVVA  112 (392)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH--HH-HhCcHHHHHHHHHHHHhhhhHHHHHH
Confidence            3445566677777788889999999999999999999998887763322  22 35678889999999999999988888


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCcccccC
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRVIRD  215 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~~r~  215 (479)
                      ..++.|..|+++|++.+++.+....+|..+|+.+...+..      ..+|+ .+.+...+..+..++.++..||++.+++
T Consensus       113 ~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~------~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  186 (392)
T PRK10473        113 FAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML------KFPWQSLFYTMAAMGILVLLLSLFILKETRPARA  186 (392)
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CcChHHHHHHHHHHHHHHHHHHHHHcCCCCCccc
Confidence            8999999999999999999999999999999988765532      13453 2334344444444443444454332111


Q ss_pred             CCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHh---hhhhhccccccc--cccccchhhhHHHHHHHHHHHHHH
Q 011720          216 DGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWAS---NFFYSYQFNNVN--GLMFNLRTRGLNNVFYWGAQMLGS  290 (479)
Q Consensus       216 d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~---~~~~s~~~~~~~--~~~f~~~~~~l~~~~~~i~~~i~~  290 (479)
                      +       ++...   .++..+.+++++++.........   ...+....+.+.  ..+++..+.++.....+++.+++.
T Consensus       187 ~-------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~  256 (392)
T PRK10473        187 P-------AASSK---PRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVS  256 (392)
T ss_pred             C-------Cccch---HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence            1       01111   12223344555543322221111   111111112222  124455556777777889999999


Q ss_pred             HHhhhhccccccCccceeeehh
Q 011720          291 VGIGYVMDFSFQSLRTRGLVGI  312 (479)
Q Consensus       291 ~~~g~l~Dr~~~gRr~~~~~g~  312 (479)
                      ++.+++.||  +|||+....+.
T Consensus       257 ~~~~~l~~r--~g~~~~~~~~~  276 (392)
T PRK10473        257 FSTPFALGI--FKPRTLMLTSQ  276 (392)
T ss_pred             HHHHHHHHh--cCHHHHHHHHH
Confidence            999999999  67887665554

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.81  E-value=4.5e-18  Score=175.90  Aligned_cols=326  Identities=16%  Similarity=0.090  Sum_probs=181.2

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhh-hccCchhhHHHHHHHHhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYY-NHHHDQTFAVVAGAVLGIGAGLLWA  134 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~-~~~~~~~~li~~R~i~G~g~g~~~~  134 (479)
                      .++...+...++...+..+++++.|+++||+|||+.+.++.+++.+........ ....+.+.+++.|++.|++.|..++
T Consensus        58 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~  137 (438)
T TIGR00712        58 FSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWP  137 (438)
T ss_pred             CCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchH
Confidence            345556667778888899999999999999999999999887776633222111 1124577888999999999999888


Q ss_pred             hhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCcccc
Q 011720          135 GQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRVI  213 (479)
Q Consensus       135 ~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~~  213 (479)
                      .....+.|+.|+++||+++++++...++|..+++.+.......     ..+|+ .+++..++.++..++..++.|+++..
T Consensus       138 ~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~-----~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~  212 (438)
T TIGR00712       138 PCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW-----FNDWHAALYFPAICAIIVALFAFAMMRDTPQS  212 (438)
T ss_pred             HHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHh
Confidence            8888899999999999999999999999998887665432211     12343 34343444444333333444433211


Q ss_pred             ---cCC----CCcccc-cccCCHHHHHHHHH--HHhhchHHHHHHHHHHHhhh-hh--hcccccccc--ccccchhhhHH
Q 011720          214 ---RDD----GTRCTN-IKYSKVSTEAIEIL--KLFRNWKMLLLFPAAWASNF-FY--SYQFNNVNG--LMFNLRTRGLN  278 (479)
Q Consensus       214 ---r~d----~~~~~~-~~~~~~~~~~~~~~--~~~~~~r~ll~~~~~~~~~~-~~--s~~~~~~~~--~~f~~~~~~l~  278 (479)
                         +++    ++.... .++.+.+.+.++.+  +.+++++++........... .+  ....+.+..  .+++....++.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~  292 (438)
T TIGR00712       213 CGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWA  292 (438)
T ss_pred             cCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHH
Confidence               000    000000 00000000112211  23456666554433222211 11  111244443  24555566777


Q ss_pred             HHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHH
Q 011720          279 NVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLY  358 (479)
Q Consensus       279 ~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (479)
                      ...+.++.+++.++.|++.||  ++|+++...+...........    ..+.  ..        . .   .+........
T Consensus       293 ~~~~~~~~~ig~~~~g~l~dr--~~~~~~~~~~~~~~~~~~~~~----~~~~--~~--------~-~---~~~~~~~~~~  352 (438)
T TIGR00712       293 YFLYEYAGIPGTLLCGWMSDK--VFKGNRGATGVFFMTLVTIAV----IVYW--MN--------P-A---GNPLVDMICM  352 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--hccCcccHHHHHHHHHHHHHH----HHHH--hc--------C-C---CchHHHHHHH
Confidence            778888999999999999999  444433333321111110111    1000  00        0 0   1111112222


Q ss_pred             HHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHH-HHHhhh
Q 011720          359 FSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGA-AVAWQV  407 (479)
Q Consensus       359 ~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~-~i~~~~  407 (479)
                      +..|+...+..........+.+ ++++|+++.|+++....++. +++..+
T Consensus       353 ~~~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~gg~~~gp~l  401 (438)
T TIGR00712       353 IVIGFLIYGPVMLIGLHALELA-PKKAAGTAAGFTGLFGYLGGSVAASAI  401 (438)
T ss_pred             HHHHHHHccHHHHHHHHHHHhc-ChhheeeehhhhchHHHhhhhhhcchh
Confidence            2333322222222233456888 77889999999987776653 444333

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK03699 putative transporter; Provisional

Probab=99.79  E-value=2.1e-17  Score=168.44  Aligned_cols=304  Identities=17%  Similarity=0.144  Sum_probs=180.2

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      .++...+...+..+.++.++.+++|++.||+|||+.+.++.+++.+...  +.. .+++.+.+++.|++.|++.|...+.
T Consensus        39 ~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~--l~~-~~~~~~~~~~~~~l~G~~~g~~~~~  115 (394)
T PRK03699         39 LPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVA--GLM-FSHSLALFSIAMFVLGVVSGITMSI  115 (394)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHH-HcchHHHHHHHHHHHHHhhHhhccc
Confidence            3455566667778888899999999999999999999999887766332  222 3578899999999999999998888


Q ss_pred             hhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchh-HHHHHHHHHHHHHHHHhccCCccccc
Q 011720          136 QGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKT-YIAFMCFMSAGAALSLAILPPSRVIR  214 (479)
Q Consensus       136 ~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~-~~i~~~l~~l~~~l~~~~~~~~~~~r  214 (479)
                      ...++.|+.|+++||+.++.......+|..+++.+...+..     ...+|+. +.+..++.++..++.++..+|++.++
T Consensus       116 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-----~~~gw~~~f~~~~~~~~~~~~~~~~~~~p~~~~~  190 (394)
T PRK03699        116 GTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA-----RSIEWYWVYACIGLVYVAIFILTLFSEFPALGKH  190 (394)
T ss_pred             hhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            88899999999999999999888888888888877654421     1234542 33323333332222232222321111


Q ss_pred             CCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhh----hhhcccccccc--ccccchhhhHHHHHHHHHHHH
Q 011720          215 DDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNF----FYSYQFNNVNG--LMFNLRTRGLNNVFYWGAQML  288 (479)
Q Consensus       215 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~----~~s~~~~~~~~--~~f~~~~~~l~~~~~~i~~~i  288 (479)
                      +++     ++++    +.+    ...++++++.....+....    ..++. +.+..  .+++..+.+.....+.++..+
T Consensus       191 ~~~-----~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~l~~~~g~s~~~~~~~~~~~~~~~~i  256 (394)
T PRK03699        191 APK-----ADKP----VAK----EKWGIGVLFLAIAALLYILAQLTFISWV-PEYAQKKFGMSLEDAGNLVSNFWMAYMV  256 (394)
T ss_pred             Ccc-----ccCc----ccc----ccCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCChHHhhHHHHHHHHHHHH
Confidence            100     0000    011    1123444333222221111    11222 44442  245566667777778888999


Q ss_pred             HHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHH
Q 011720          289 GSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMF  368 (479)
Q Consensus       289 ~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  368 (479)
                      +.++.+++.||  ++||+......... .+.  +..  +.    ..              ++........+..|+..+..
T Consensus       257 g~~~~g~l~dr--~~~~~~l~~~~~~~-~~~--~~~--~~----~~--------------~~~~~~~~~~~~~G~~~~~~  311 (394)
T PRK03699        257 GMWIFSFIVRF--FDLQRILTVLAGLA-LVL--MYL--FV----NT--------------DDPSHLLYAILGLGFFSSAI  311 (394)
T ss_pred             HHHHHHHHHHH--hchhhHHHHHHHHH-HHH--HHH--HH----Hc--------------CCchHHHHHHHHHHHHHHHH
Confidence            99999999999  67776544332221 111  110  10    01              11112233445566666666


Q ss_pred             HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          369 QSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       369 ~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      .+....+..+..  ++.+++..+.......+|..++..+.
T Consensus       312 ~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~i~p~~~  349 (394)
T PRK03699        312 YTTIITLGSQQT--KVASPKLVNFILTCGTIGTMLTFVVT  349 (394)
T ss_pred             HHHHHHHHHHHc--cCCCHHHHHHHHHhhhHHHHHHHHHH
Confidence            665555556655  23445667777777777777665544

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.79  E-value=4.8e-17  Score=165.69  Aligned_cols=309  Identities=13%  Similarity=0.057  Sum_probs=185.1

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      .++...+...+.......+++++.|+++||+|||+.+.++.+...+....  .. .+++.+.+++.|++.|++.+...+.
T Consensus        40 ~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~~~~~~  116 (394)
T PRK11652         40 VREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLV--AL-FAHSLTVLIAASAIQGLGTGVGGVM  116 (394)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHH--HH-HHccHHHHHHHHHHHHhhhhHHHHH
Confidence            34556667778888888999999999999999999999998877663332  22 3578999999999999999987777


Q ss_pred             hhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCccccc
Q 011720          136 QGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRVIR  214 (479)
Q Consensus       136 ~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~~r  214 (479)
                      ...+..|..++++|+++.+++.....+|..+|+.+...+..      ..+|+ .+.+..++..+..++..++.||++..+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  190 (394)
T PRK11652        117 ARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT------LFGWRACYLFLLLLGAGVTFSMARWMPETRPAD  190 (394)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccChHHHHHHHHHHHHHHHHHHHHhCCccCccc
Confidence            77788898899999999999999999999999988765532      13454 233323333332223333344432111


Q ss_pred             CCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHH--HHHhhh--hhhcccccccc--ccccchhhhHHHHHHHHHHHH
Q 011720          215 DDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPA--AWASNF--FYSYQFNNVNG--LMFNLRTRGLNNVFYWGAQML  288 (479)
Q Consensus       215 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~--~~~~~~--~~s~~~~~~~~--~~f~~~~~~l~~~~~~i~~~i  288 (479)
                      +        ++++.++   ...+.+++|+++.....  .....+  +..+. +.+..  .+++..+.++......++.++
T Consensus       191 ~--------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~  258 (394)
T PRK11652        191 A--------RRTRVLA---SYRTLLSNRRFNCYLLMLIGTLAGIAVFEACS-GVLMGAVLGLSSMTVSILFILPIPAAFF  258 (394)
T ss_pred             c--------chhHHHH---HHHHHHcChHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            0        0111122   22233445544322111  111111  11111 22222  234545556666677888888


Q ss_pred             HHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHH
Q 011720          289 GSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMF  368 (479)
Q Consensus       289 ~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  368 (479)
                      ++.+.+++.||+  +|+.  ..+...+. +....... ...    .          ..  ..........++.+++.+..
T Consensus       259 g~~~~~~l~~~~--~~~~--~~~~~~~~-~~~~~~~~-~~~----~----------~~--~~~~~~~~~~~~~~~g~~~~  316 (394)
T PRK11652        259 GAWFAGRPNKRF--STLM--WQSVICCL-LAGLLMWI-PGW----F----------GV--MNVWTLLVPAALFFFGAGML  316 (394)
T ss_pred             HHHHHHHHHHHH--HHHH--HHHHHHHH-HHHHHHHH-HHH----h----------cc--ccHHHHHHHHHHHHHHHHHH
Confidence            888888888873  3322  12211111 11111100 000    0          01  11223344445566666666


Q ss_pred             HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          369 QSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       369 ~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      .+....+..+..  +++++++.++....+.+|.+++..+..
T Consensus       317 ~~~~~~~~~~~~--~~~~g~~~~~~~~~~~lg~~~~~~~~~  355 (394)
T PRK11652        317 FPLATSGAMEPF--PYLAGTAGALLGGLQNIGSGLAALLSA  355 (394)
T ss_pred             HHHHHHHHHhhc--cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            776666666766  467889999999888888888876553

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.79  E-value=6.6e-17  Score=165.18  Aligned_cols=305  Identities=13%  Similarity=0.131  Sum_probs=180.2

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      ++...+...+.......+.++++|+++||+|||+.+.++.+...+......   .+++.+.+++.|++.|++.+..+++.
T Consensus        44 s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~~~l~g~~~~~~~~~~  120 (400)
T PRK11646         44 AAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMA---IAHEPWLLWLSCILSGLGGTLFDPPR  120 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            355556666666666667789999999999999999999988777433322   34688999999999999999888888


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCcccccC
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRVIRD  215 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~~r~  215 (479)
                      .+++.|..|+++||+++|+.....++|..+|+.++..+. +      ++|+ .+.+...+.++..++..++.||.+..+.
T Consensus       121 ~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~------~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~  193 (400)
T PRK11646        121 TALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-Q------YDFRLVCATGAVLFVLAAAFNAWLLPAYKLSTV  193 (400)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H------hhHHHHHHHHHHHHHHHHHHHHHhCCccccccc
Confidence            889999999999999999999999999999999887664 2      2343 2333233333333333344443221110


Q ss_pred             CCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhhh---hhcccccccc-ccccchhhhHHHHHHHHHHHHHHH
Q 011720          216 DGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFF---YSYQFNNVNG-LMFNLRTRGLNNVFYWGAQMLGSV  291 (479)
Q Consensus       216 d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~---~s~~~~~~~~-~~f~~~~~~l~~~~~~i~~~i~~~  291 (479)
                               +++.+++++   +.+++|+++............   ....++.+.. ...+..+.++.....+++...+..
T Consensus       194 ---------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~  261 (400)
T PRK11646        194 ---------RTPVREGMT---RVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLY  261 (400)
T ss_pred             ---------chhhHHHHH---HHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHH
Confidence                     111122222   334556554332221111110   1111133322 122334455555555555555555


Q ss_pred             HhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHH
Q 011720          292 GIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSM  371 (479)
Q Consensus       292 ~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  371 (479)
                      ..+++.||+ .+.|+....+..... +....    +..               .   .+........++++.+.+...+.
T Consensus       262 ~~~~~~~~r-~~~~~~~~~~~~~~~-~~~~~----l~~---------------~---~~~~~~~~~~~l~~~g~~~~~p~  317 (400)
T PRK11646        262 PIARWSEKR-FRLEHRLMAGLLIMS-LSMFP----IGM---------------V---SNLQQLFTLICLFYIGSIIAEPA  317 (400)
T ss_pred             HHHHHHHHh-cchhHHHHHHHHHHH-HHHHH----HHH---------------h---hhHHHHHHHHHHHHHHHHHHHcc
Confidence            556666653 333433333322211 11111    100               0   11122223334456666666666


Q ss_pred             HHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          372 VYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       372 ~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      ...++.+.. |+++|+++.++++...++|..++..+.
T Consensus       318 ~~~~~~~~~-p~~~~g~~~g~~~~~~~~g~~ig~~l~  353 (400)
T PRK11646        318 RETLSASLA-DARARGSYMGFSRLGLALGGAIGYIGG  353 (400)
T ss_pred             HHHHHHhcC-CcccchhhhhHHHHHHHHHHHhcccch
Confidence            667777888 788999999999998888888886654

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.79  E-value=2.8e-17  Score=168.10  Aligned_cols=242  Identities=11%  Similarity=0.003  Sum_probs=148.0

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhh--hccCchhhHHHHHHHHhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYY--NHHHDQTFAVVAGAVLGIGAGLLW  133 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~--~~~~~~~~li~~R~i~G~g~g~~~  133 (479)
                      .++.......++....+++..+..|++.||+|+|+.+.++.++..+.+......  +..++++.+++.|++.|++ |..+
T Consensus        67 ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f  145 (462)
T PRK15034         67 FTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANF  145 (462)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhH
Confidence            456666777788888899998889999999999999999998877644332221  1236899999999999998 6677


Q ss_pred             hhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhh-----hhh--ccCC----cc-cccch-hHHHHHHHHHHHH
Q 011720          134 AGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFI-----MNY--HRTD----AE-SVNDK-TYIAFMCFMSAGA  200 (479)
Q Consensus       134 ~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~-----i~~--~~~~----~~-~~~~~-~~~i~~~l~~l~~  200 (479)
                      ++....++++.|+++||+++|++....++|..+++.+...     +..  ....    .+ ..+|+ ..++..++.++..
T Consensus       146 ~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~  225 (462)
T PRK15034        146 ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIAT  225 (462)
T ss_pred             HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHH
Confidence            8888899999999999999999976666666555444322     110  0000    00 11122 1222233333433


Q ss_pred             HHHHhccCCcccccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhh--h-hhhccccccccccccchhhhH
Q 011720          201 ALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASN--F-FYSYQFNNVNGLMFNLRTRGL  277 (479)
Q Consensus       201 ~l~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~--~-~~s~~~~~~~~~~f~~~~~~l  277 (479)
                      ++.+++.++.+..           +.+    +++..+.+|+|+.+++..+.+.+.  + .+++.++.+....++......
T Consensus       226 i~~~~~~~~~~~~-----------~~~----~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~~~~~l~  290 (462)
T PRK15034        226 IAAWSGMNDIASS-----------RAS----IADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFPDVNILR  290 (462)
T ss_pred             HHHHHhCCCcccc-----------ccC----HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence            4444444432210           111    234456778888777665544321  1 123222333322232222222


Q ss_pred             HHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhh
Q 011720          278 NNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIV  315 (479)
Q Consensus       278 ~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~  315 (479)
                      ......+...+..+++|+++||  +|+|+...++.+.+
T Consensus       291 ~~~l~~l~~~l~rplgG~LADR--iG~~~vl~~~~i~~  326 (462)
T PRK15034        291 LAFFGPFIGAIARSVGGAISDK--FGGVRVTLINFIFM  326 (462)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHh--cCchHHHHHHHHHH
Confidence            2333456677888999999999  77888777666544

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.78  E-value=3.1e-17  Score=162.86  Aligned_cols=284  Identities=20%  Similarity=0.219  Sum_probs=196.3

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      ++...+...+.......+++++.|+++||+|||+.+.++.++..+......   ..++.+.++++|++.|++.+..++..
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~  108 (352)
T cd06174          32 SASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA---FASSLWLLLVGRFLLGLGGGALYPAA  108 (352)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHcccccccHhH
Confidence            455566677778888899999999999999999999999988776433322   24689999999999999999999999


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCcccccC
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRVIRD  215 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~~r~  215 (479)
                      ..++.|+.|+++|++.+++......+|..+|+.+...+...      .+|+ .+.+...+.++..++..++.        
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--------  174 (352)
T cd06174         109 AALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES------LGWRWLFLILAILGLLLALLLLFLL--------  174 (352)
T ss_pred             HHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence            99999999999999999999999999999999988866432      2233 23333333333333222211        


Q ss_pred             CCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhh---hhhccccccccc--cccchhhhHHHHHHHHHHHHHH
Q 011720          216 DGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNF---FYSYQFNNVNGL--MFNLRTRGLNNVFYWGAQMLGS  290 (479)
Q Consensus       216 d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~---~~s~~~~~~~~~--~f~~~~~~l~~~~~~i~~~i~~  290 (479)
                                                |+++......+....   .+....+.+...  +++..+.+......+++.+++.
T Consensus       175 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  228 (352)
T cd06174         175 --------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGA  228 (352)
T ss_pred             --------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence                                      122111111111111   011111222211  3455566778888899999999


Q ss_pred             HHhhhhccccccCccc-eeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHH
Q 011720          291 VGIGYVMDFSFQSLRT-RGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQ  369 (479)
Q Consensus       291 ~~~g~l~Dr~~~gRr~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  369 (479)
                      ++.+++.||  .|||+ ....+..... +....    ...               .   .+........++.+++.+..+
T Consensus       229 ~~~~~~~~~--~~~~~~~~~~~~~~~~-i~~~~----~~~---------------~---~~~~~~~~~~~~~g~~~~~~~  283 (352)
T cd06174         229 LLGGLLSDR--LGRRRLLLLIGLLLAA-LGLLL----LAL---------------A---PSLALLLVALLLLGFGLGFAF  283 (352)
T ss_pred             HHHHHHHHH--HHhhhHHHHHHHHHHH-HHHHH----HHH---------------h---ccHHHHHHHHHHHHHHHhccc
Confidence            999999999  67877 5544433321 11111    100               0   123345667778888888888


Q ss_pred             HHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          370 SMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       370 ~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      +....+..+.. |+++|++..++.+..++++..++..+..
T Consensus       284 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~i~g  322 (352)
T cd06174         284 PALLTLASELA-PPEARGTASGLFNTFGSLGGALGPLLAG  322 (352)
T ss_pred             hhHHHHHHhhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888899999 7799999999999999999998877654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10133 L-fucose transporter; Provisional

Probab=99.78  E-value=7.2e-17  Score=166.75  Aligned_cols=302  Identities=12%  Similarity=0.033  Sum_probs=180.0

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      .++...+...+..+.++.+++++.|++.||+|||+++.++.+++.+....+.....+++++.++++|+++|+|.|...++
T Consensus        58 ~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~  137 (438)
T PRK10133         58 LTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETA  137 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhh
Confidence            45566777778888999999999999999999999999999998874433321224678999999999999999999999


Q ss_pred             hhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhcc-C------------C-cccc------cchh-HHHHHH
Q 011720          136 QGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHR-T------------D-AESV------NDKT-YIAFMC  194 (479)
Q Consensus       136 ~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~-~------------~-~~~~------~~~~-~~i~~~  194 (479)
                      ...++.|+.++++|++.++++...+.+|..+|+.++..+.... .            + ...|      +|+. |.....
T Consensus       138 ~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~  217 (438)
T PRK10133        138 ANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVA  217 (438)
T ss_pred             HHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999887777777899999999999999998876442110 0            0 0011      1221 211111


Q ss_pred             HHHHHHHHHHhc-cCCcccccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHH-HHHhhh---hhhccccccc-c-
Q 011720          195 FMSAGAALSLAI-LPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPA-AWASNF---FYSYQFNNVN-G-  267 (479)
Q Consensus       195 l~~l~~~l~~~~-~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~-~~~~~~---~~s~~~~~~~-~-  267 (479)
                      +..+..++..+. .|+.+.+++++     +++.+..++.   .+.+++|+++..... +++...   .+++. +.+. + 
T Consensus       218 v~~~~~~~~~~~~~p~~~~~~~~~-----~~~~~~~~~~---~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~l~~~  288 (438)
T PRK10133        218 IVLLVALLIMLTKFPALQSDNHSD-----AKQGSFSASL---SRLARIRHWRWAVLAQFCYVGAQTACWSYL-IRYAVEE  288 (438)
T ss_pred             HHHHHHHHHHHhcCCCCCcccccc-----ccccchhhhH---HHHHhCchHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh
Confidence            111111111121 22211111100     0011111222   234455554332221 111111   12232 3332 2 


Q ss_pred             -ccccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccC
Q 011720          268 -LMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKT  346 (479)
Q Consensus       268 -~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (479)
                       .+.+....++....+.++.++++++.+++.||  +|||+....+..... ..+.+    ..+    .            
T Consensus       289 ~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r--~g~~~~l~~~~~~~~-~~~~~----~~~----~------------  345 (438)
T PRK10133        289 IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR--FAPHKVLAAYALIAM-ALCLI----SAF----A------------  345 (438)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHH-HHHHH----HHH----c------------
Confidence             24566667888888999999999999999999  678876655533221 11111    110    0            


Q ss_pred             CCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHH
Q 011720          347 SGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYK  394 (479)
Q Consensus       347 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~  394 (479)
                        ++. .....+.++|++.+...|..++...+..  +++.+.+.++..
T Consensus       346 --~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~--~~~~~~as~l~~  388 (438)
T PRK10133        346 --GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNL--GQDTKYGSSFIV  388 (438)
T ss_pred             --CCh-HHHHHHHHHHHHHHHHHHHHHHHHHccc--chhhccchhHHh
Confidence              111 1234456788888888888887777766  233345555554

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.78  E-value=1.1e-16  Score=184.52  Aligned_cols=324  Identities=11%  Similarity=0.000  Sum_probs=193.9

Q ss_pred             hhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhh---hHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720           59 TAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAG---CSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        59 ~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig---~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      ...++..++..+.+.+.++++|.++||+|||+++...   .+.+..  .+.+.. ..+++++++++|+++|++.++.+++
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~--~~~~~~-~~~s~~~l~~~~~l~gi~~a~~~p~  128 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAA--LAIYGF-HLNSVPLLFAALFLMGIHSALFGPI  128 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHH--HHHHHH-HHhhHHHHHHHHHHHHHHHHhhchH
Confidence            4566667777788899999999999999999976432   222222  111111 2368999999999999999999999


Q ss_pred             hhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCcccccC
Q 011720          136 QGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRVIRD  215 (479)
Q Consensus       136 ~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~~r~  215 (479)
                      ..+++.++.++++|++++|+..+..++|.++|+.++..+...      .+|+..++..++..+..++..+..|+.+..++
T Consensus       129 ~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (1140)
T PRK06814        129 KYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS------GNFVILVALLMGIAVLGWLASLFIPKTGNAAP  202 (1140)
T ss_pred             HHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc------cccHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence            999999999999999999999999999999999998876432      34543322222222222222233333221111


Q ss_pred             CCCcccccccCCHHHHHHHHHHHh-hchHHHHHHHHHHHhhhhh---hccccccccc--cccchhhhHHHHHHHHHHHHH
Q 011720          216 DGTRCTNIKYSKVSTEAIEILKLF-RNWKMLLLFPAAWASNFFY---SYQFNNVNGL--MFNLRTRGLNNVFYWGAQMLG  289 (479)
Q Consensus       216 d~~~~~~~~~~~~~~~~~~~~~~~-~~~r~ll~~~~~~~~~~~~---s~~~~~~~~~--~f~~~~~~l~~~~~~i~~~i~  289 (479)
                       +.+    .+....++....++.. ++|.++......+...+..   ...++.+...  +.+....++.....+++.+++
T Consensus       203 -~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig  277 (1140)
T PRK06814        203 -DLK----IDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVG  277 (1140)
T ss_pred             -CCe----eccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence             100    0111222233333333 4455544443333222211   1111333321  234455677778889999999


Q ss_pred             HHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCc--c---c-ccCCCCCchhHHHHHHHHHh
Q 011720          290 SVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKR--L---D-FKTSGNDFAGPFVLYFSYGL  363 (479)
Q Consensus       290 ~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~-~~~~~~~~~~~~~~~~~~g~  363 (479)
                      +++.|++.|++  ++++....+..++.+.  .+.   +.+.  ......+..  .   . +..  .+.+...+..++.|+
T Consensus       278 ~~~~g~l~~~~--~~~~~~~~~~~~~~~~--~~~---l~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~  346 (1140)
T PRK06814        278 SFLASKLSEGR--ITLLYVPIGALLMGLF--GLD---LAFA--SSSVPAEPAQLKSILVFLSK--RHGWRILIDLFGLAA  346 (1140)
T ss_pred             HHHHHHHhCCc--eeeeeehHHHHHHHHH--HHH---HHhc--ccccccccccccchhhhhcc--cccHHHHHHHHHHHH
Confidence            99999999773  3444444343322111  111   1010  000000000  0   0 001  122344556667788


Q ss_pred             hHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          364 LDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       364 ~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      +.+..++..+.++.+.. +++.|++++|+.++..+++.+++..+.
T Consensus       347 ~~~~~~~~~~~~~~~~~-p~~~~G~v~g~~~~~~~~~~~ig~~~~  390 (1140)
T PRK06814        347 AGGLYIVPLFAALQAWA-NPAHRARVIAANNVLNAAFMVAGTIIL  390 (1140)
T ss_pred             HHHHhHHHHHHHHHhhC-CcccceeeeHHHHHHHHHHHHHHHHHH
Confidence            88888887888888888 888999999999999988887776543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.77  E-value=1.8e-16  Score=159.93  Aligned_cols=305  Identities=16%  Similarity=0.108  Sum_probs=173.4

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHH-HHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTY-VLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~-~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      ++...+...+.......+.+++.|.++||+|||+.+++..... .+  ...... .+++++.+++.|++.|.+.+...+.
T Consensus        31 s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~--~~~~~~-~~~~~~~l~~~~~~~g~~~~~~~p~  107 (375)
T TIGR00899        31 RPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAAL--ACLLFA-WNRNYFLLLVLGVLLSSFASTANPQ  107 (375)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH--HHHHHH-hcchHHHHHHHHHHHHhhhhhhHHH
Confidence            3445555666666667778889999999999998776654433 33  122222 3578888999999999888777777


Q ss_pred             hhhhhhcCCCccchHhH--HHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCccc
Q 011720          136 QGAIMTSYPTATRKGTY--ISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRV  212 (479)
Q Consensus       136 ~~~~i~e~~~~~~RG~~--~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~  212 (479)
                      ...+..|..|+++|++.  .+......++|.++|+.+...+..      ..+|+ .+++...+.++..++..++.||++.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T TIGR00899       108 LFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL------GFGFTVMFLTAALAFVLCGVLVWLFLPSYPR  181 (375)
T ss_pred             HHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH------hcccHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            77777888887777754  577777788999999988776532      13454 3444344344444444444554332


Q ss_pred             ccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHH--HHHh-hhhhhcccccccc--ccccchhhhHHHHHHHHHHH
Q 011720          213 IRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPA--AWAS-NFFYSYQFNNVNG--LMFNLRTRGLNNVFYWGAQM  287 (479)
Q Consensus       213 ~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~--~~~~-~~~~s~~~~~~~~--~~f~~~~~~l~~~~~~i~~~  287 (479)
                      .++++     +++    ++.++   .+++|+.+.....  ..+. ...+...++.+..  .+.+..+.++......+..+
T Consensus       182 ~~~~~-----~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~  249 (375)
T TIGR00899       182 GAPGA-----LTR----LEVRG---LLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEI  249 (375)
T ss_pred             Ccccc-----cCc----chhhh---hhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            11110     001    11111   2233433222111  1111 1111111122221  23344445555555556667


Q ss_pred             HHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHH
Q 011720          288 LGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAM  367 (479)
Q Consensus       288 i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  367 (479)
                      ++.++.|++.||  +|||+....+.... .+   .+.. +..               .   .+.+......++.+++.+.
T Consensus       250 ~~~~~~g~l~~r--~g~~~~~~~~~~~~-~~---~~~~-~~~---------------~---~~~~~~~~~~~~~g~~~g~  304 (375)
T TIGR00899       250 PFMLLAGYLIKR--FGKRRLMLLAALAG-VA---FYTG-LAA---------------D---NSLWALLMLQLLNAIFIGI  304 (375)
T ss_pred             HHHHhHHHHHHH--hcchhHHHHHHHHH-HH---HHHH-HHH---------------H---HHHHHHHHHHHHHHHHHHH
Confidence            788889999999  67887554433221 11   1100 100               0   1122333444556666666


Q ss_pred             HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          368 FQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       368 ~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      ..+....+..+.. | ++++++.++++...++|..++..+..
T Consensus       305 ~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~g~~~g~~~~g  344 (375)
T TIGR00899       305 LAGIGMLYFQDLM-P-GRAGAATTLYTNTGRVGWIIAGSVGG  344 (375)
T ss_pred             HHHHHHHHHHHhC-c-chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666777877 4 45679999999888888888866553

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.77  E-value=1.8e-17  Score=162.35  Aligned_cols=352  Identities=18%  Similarity=0.150  Sum_probs=214.6

Q ss_pred             cccccchhHHHHHHHHHHhhhhh----hhh-hhhcCCCCCCCChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhh
Q 011720           20 LFRYNSPLVQVSLIGLVCFCCPG----MFN-ALSGMGGGGQLDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAA   94 (479)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~f~~~~----~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~i   94 (479)
                      .+.|+|...|+.+.-++.+.+.-    .++ +.+.+..+...+....+...++++..++++-++.|.++||.+.|.-+.+
T Consensus        20 ~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~   99 (448)
T COG2271          20 DKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAF   99 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehH
Confidence            45666666677766666555521    011 3444444443566677778889999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHH--h
Q 011720           95 GCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIP--F  172 (479)
Q Consensus        95 g~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~--~  172 (479)
                      |.+...+  ...+ ...+++.+.+.+.-+++|+..|.-|+.....++.+.++++||+..++++...++|..+.+.+.  .
T Consensus       100 gLilsai--~nil-~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la  176 (448)
T COG2271         100 GLILSAI--VNIL-FGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLA  176 (448)
T ss_pred             HHHHHHH--HHHH-HhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHH
Confidence            9887665  2222 224568999999999999999999999999999999999999999999999999998887776  4


Q ss_pred             hhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCccc---------ccCCCCcc-cccc-c--CCHHHHHHHHHHH
Q 011720          173 IMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRV---------IRDDGTRC-TNIK-Y--SKVSTEAIEILKL  238 (479)
Q Consensus       173 ~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~---------~r~d~~~~-~~~~-~--~~~~~~~~~~~~~  238 (479)
                      .+..+      .+|+ .|+++.++.++..++.++..+.+|.         .|.|..+. +.++ +  .+.++.+.  ...
T Consensus       177 ~~~~~------~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~--~YV  248 (448)
T COG2271         177 FFAFH------GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFV--KYV  248 (448)
T ss_pred             HHHhc------cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHH--HHH
Confidence            34322      3454 3555555555544444444433221         12232211 1111 1  11122111  124


Q ss_pred             hhchHHHHHHHHHHHhhhhh----hccccccc--cccccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehh
Q 011720          239 FRNWKMLLLFPAAWASNFFY----SYQFNNVN--GLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGI  312 (479)
Q Consensus       239 ~~~~r~ll~~~~~~~~~~~~----s~~~~~~~--~~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~  312 (479)
                      +++|.++++...-++....-    .+. +.|+  ...++..+.......+=++.+.|+++.|+++||.--|||.+.-+  
T Consensus       249 L~Nk~iW~la~a~vfvYivR~gi~dW~-p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~--  325 (448)
T COG2271         249 LKNKLIWLLALANVFVYVVRYGINDWG-PLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMAL--  325 (448)
T ss_pred             HcChHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHH--
Confidence            57777777665444332211    111 3333  24567767777777889999999999999999963367764322  


Q ss_pred             hhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHH
Q 011720          313 GIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGF  392 (479)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~  392 (479)
                      +.+..++.++.  .+     +..         .+  .++.....+.+..|+.-.+=|...-....|.. |.+--+++.|+
T Consensus       326 i~~~~i~~~~~--~~-----w~~---------~~--~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~-pK~AaGtA~Gf  386 (448)
T COG2271         326 IFMLLITASLV--LY-----WLA---------PN--GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFV-PKKAAGTATGF  386 (448)
T ss_pred             HHHHHHHHHHH--HH-----HcC---------CC--ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccc-cHhhccchhch
Confidence            22211111111  01     110         11  23445555555566655444432222233555 55555677777


Q ss_pred             HHHHHHH-HHHHH
Q 011720          393 YKGVQSA-GAAVA  404 (479)
Q Consensus       393 ~~~~~~~-g~~i~  404 (479)
                      ...+..+ |.+.+
T Consensus       387 ~Glf~Yl~Ga~~a  399 (448)
T COG2271         387 VGLFAYLIGAALA  399 (448)
T ss_pred             hhhHHHHhhHHhc
Confidence            7777766 55444

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.77  E-value=6.2e-16  Score=161.75  Aligned_cols=348  Identities=15%  Similarity=0.056  Sum_probs=204.0

Q ss_pred             cccchhHHHHHHHHHHhhhhhhhhh-hhcCCCCCCCChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHH
Q 011720           22 RYNSPLVQVSLIGLVCFCCPGMFNA-LSGMGGGGQLDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYV  100 (479)
Q Consensus        22 ~~~~~~~~~~~~~~~~f~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~  100 (479)
                      ..++.+..+.+..+++-+...++.. ..-+..+...++....+...+..+-..+.++++|.++||+.||+.++.+-++..
T Consensus         7 lr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~   86 (524)
T PF05977_consen    7 LRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRA   86 (524)
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence            3444444555555555444433331 110000111224444455555555566778999999999999999999987654


Q ss_pred             HHHHHHHhh--hccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhcc
Q 011720          101 LYAGSFLYY--NHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHR  178 (479)
Q Consensus       101 i~~~~~~~~--~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~  178 (479)
                      +........  ....+.+.+++.-++.|++.++..++..+++.|+.|+++..++.++.....++..++||.++..+....
T Consensus        87 ~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~  166 (524)
T PF05977_consen   87 LVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFF  166 (524)
T ss_pred             HHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            432222111  113468899999999999999999999999999999999999999999999999999998887653210


Q ss_pred             CCcccccchhHHHHHHHHHHHHHHHHhccCCcccccCCCCcccccccCCHHHHHHHHHHHhh-chHHHHHHHHHHHhhhh
Q 011720          179 TDAESVNDKTYIAFMCFMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFR-NWKMLLLFPAAWASNFF  257 (479)
Q Consensus       179 ~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~-~~r~ll~~~~~~~~~~~  257 (479)
                          +..+ .+.+..+ ..+..++.+...++++..++       .+++++.+++++-++..+ +|.+.......+..+++
T Consensus       167 ----G~~~-~f~inal-sfl~~i~~l~~~~~~~~~~~-------~~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~  233 (524)
T PF05977_consen  167 ----GAAA-AFLINAL-SFLISILALLRWKPPPPPSS-------LPRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLF  233 (524)
T ss_pred             ----HHHH-HHHHHHH-HHHHHHHHHHHccccccccc-------cchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence                1112 2333222 22222222222222111110       112334455666666444 34333222211111221


Q ss_pred             hhc---ccccccccc--ccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcc
Q 011720          258 YSY---QFNNVNGLM--FNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLN  332 (479)
Q Consensus       258 ~s~---~~~~~~~~~--f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~  332 (479)
                      .+.   .++.+....  .+...-|+.....++|.++|+++.+++.+|  +++++....+...... ....    +.    
T Consensus       234 ~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~--~~~~~lv~~~~~~~a~-~~~~----la----  302 (524)
T PF05977_consen  234 ASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR--LSSRRLVLLASLLFAL-ALLL----LA----  302 (524)
T ss_pred             hhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cCcchhhHHHHHHHHH-HHHH----Hh----
Confidence            111   112222112  234455778889999999999999998776  4555543333322111 0000    10    


Q ss_pred             cCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          333 YSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                                 ..   ++.+......++.|++....++.......+.. |.+.|+|.+++++.....+..++..+.
T Consensus       303 -----------l~---~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~-P~~~~GRv~si~~~~~~g~~~lGsll~  363 (524)
T PF05977_consen  303 -----------LS---PSFWLALIALFLAGAAWIIANSSLNTLVQLSV-PDWVRGRVFSIYQMVFFGGMPLGSLLW  363 (524)
T ss_pred             -----------cc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence                       11   23345556667778888777776666777777 889999999999999888888876654

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.76  E-value=1.7e-18  Score=171.08  Aligned_cols=236  Identities=12%  Similarity=0.084  Sum_probs=152.0

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      .++...++........+.+.+++.|+++||+.||+++.+|..+|.+.  .+.+. .+.++|++.+.|.+.|+|.+...+.
T Consensus        65 i~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~A--v~~~~-fs~~Fwq~~l~R~~vGiGeAs~~~i  141 (493)
T KOG1330|consen   65 ISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLA--VFASG-FSNHFWQVLLCRGFVGIGEASYSPI  141 (493)
T ss_pred             CCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHH--HHHHH-HHHHHHHHHHHHHHhccchhhhccc
Confidence            33444555566777888999999999999999999999999999883  33333 3567999999999999999999999


Q ss_pred             hhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHH-hccCCccccc
Q 011720          136 QGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSL-AILPPSRVIR  214 (479)
Q Consensus       136 ~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~-~~~~~~~~~r  214 (479)
                      ++.+++|.+|..+|++.+++|+....+|..+|..++..+..+.   ..|+|. +++-.+++++..++.+ +.++|++..|
T Consensus       142 a~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~---~~Wr~a-f~~~avl~vi~~~L~~~f~~eP~rga~  217 (493)
T KOG1330|consen  142 APSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT---FWWRWA-FRGSAVLGVIVGLLVFLFVREPERGAR  217 (493)
T ss_pred             chhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc---cceEEE-EEeehHHHHHHHHHHHhhccCcccccc
Confidence            9999999999999999999999999999999988877654332   235554 3344455554444434 4444543222


Q ss_pred             CCCCcccccccCCHHHHHHHHHHHhhchHHHH----HHHHHHHhhhhhhcccccccc-----ccccchhhhHHHHHHHHH
Q 011720          215 DDGTRCTNIKYSKVSTEAIEILKLFRNWKMLL----LFPAAWASNFFYSYQFNNVNG-----LMFNLRTRGLNNVFYWGA  285 (479)
Q Consensus       215 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll----~~~~~~~~~~~~s~~~~~~~~-----~~f~~~~~~l~~~~~~i~  285 (479)
                      ++.+.. .+..++....+|+++...++|-+.+    ..-.++-.+- +++..+.+..     .+++.++..+...+..++
T Consensus       218 ~~~~~~-~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs-~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~  295 (493)
T KOG1330|consen  218 DEVDGE-NKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGS-LSWWAPAFIYYSYELIGFDHNATLIFGGVTCAG  295 (493)
T ss_pred             cccccC-CcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccc-cchhhhhHHHHHHHHhCCccccchhhhhHHHhh
Confidence            211110 0001112223444444444332222    2212222221 2222222221     124444445566777888


Q ss_pred             HHHHHHHhhhhcccc
Q 011720          286 QMLGSVGIGYVMDFS  300 (479)
Q Consensus       286 ~~i~~~~~g~l~Dr~  300 (479)
                      ..+|.+++|.++||.
T Consensus       296 G~lGvl~Ggiisd~~  310 (493)
T KOG1330|consen  296 GSLGVLFGGIISDKL  310 (493)
T ss_pred             chhhheehHHHHHHH
Confidence            899999999999983

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.76  E-value=7.4e-17  Score=170.58  Aligned_cols=315  Identities=13%  Similarity=0.066  Sum_probs=181.5

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      +........++++++..+|+++.|+++|++|||++++++.++..++.  ... +.++|++.+++.|++.|++.+...+..
T Consensus       116 ~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~--~~~-a~a~~~~~~~~~Rfl~G~~~~~~~~~~  192 (521)
T KOG0255|consen  116 SSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFG--ILT-AFAPNYWMFLIFRFLSGFFGSGPLTVG  192 (521)
T ss_pred             cHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHH--HHH-HHhCcHHHHHHHHHHHHhhccchhHHh
Confidence            34567778899999999999999999999999999999999988844  332 357999999999999999999999999


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCccc----
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRV----  212 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~----  212 (479)
                      ..+++|+.+|++|+....+ ......++.+++....++..      +|+|..+. ..+...+..++ .++.||++.    
T Consensus       193 ~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~------~Wr~~~~~-~~~~~~~~~~~-~~l~~Es~rwl~~  263 (521)
T KOG0255|consen  193 FGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR------DWRWLFWI-ISIPSGLFLLL-WFLPPESPRWLLS  263 (521)
T ss_pred             HhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh------hHHHHHHH-HHHHHHHHHHH-HHccCcChHHHHH
Confidence            9999999999999999999 55555666665555444431      24443332 22223322222 455555542    


Q ss_pred             -ccCCCCccccc-------ccCCHHHHHH-----------------HHHHHhhchHHHH--HHHHHHHhhhhhhccccc-
Q 011720          213 -IRDDGTRCTNI-------KYSKVSTEAI-----------------EILKLFRNWKMLL--LFPAAWASNFFYSYQFNN-  264 (479)
Q Consensus       213 -~r~d~~~~~~~-------~~~~~~~~~~-----------------~~~~~~~~~r~ll--~~~~~~~~~~~~s~~~~~-  264 (479)
                       +|.|+.....+       .+....+..+                 .....++.+++..  +...+.+......|+ +. 
T Consensus       264 ~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~-gl~  342 (521)
T KOG0255|consen  264 KGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYY-GLS  342 (521)
T ss_pred             cCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHH-hhh
Confidence             12211110000       0011100000                 0111222222111  111111111101111 11 


Q ss_pred             cccccccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccc
Q 011720          265 VNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDF  344 (479)
Q Consensus       265 ~~~~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (479)
                      ++...++. ...+.....+.....+....+...|+  .|||.....+..... +.+.+. +   +.   .        + 
T Consensus       343 ~~~~~lg~-~~~~~~~~~~~~~~p~~~~~~~~~~~--~gR~~~~~~~~~~~~-~~~~~~-~---~~---~--------~-  402 (521)
T KOG0255|consen  343 LNVSGLGG-NIYLNFTLSGLVELPAYFRNGLLLPE--FGRRPPLFLSLFLAG-IGLLLF-G---WL---P--------D-  402 (521)
T ss_pred             hhhhhcCc-hHHHHHHHHHHHHhhHHHHHHHHHHH--hCcHHHHHHHHHHHH-HHHHHH-H---Hh---h--------c-
Confidence            11111111 22333444555677777777888898  689987666543322 111111 1   10   0        0 


Q ss_pred             cCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          345 KTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       345 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      ..  .......+..+..++...++.. .+.+..|++ |...|..+.+.......++..++..+.
T Consensus       403 ~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~el~-pt~~r~~~~~~~~~~~~~~~i~ap~~~  462 (521)
T KOG0255|consen  403 DL--GGWLHWILPLLGKFFIGSAFNL-IFLYSAELI-PTVVRNTAVGAISAAARLGSILAPLFP  462 (521)
T ss_pred             cc--hhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11  1011223333334445555555 477888999 788899999999998888888887765

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.76  E-value=4.1e-16  Score=163.44  Aligned_cols=296  Identities=13%  Similarity=0.083  Sum_probs=163.9

Q ss_pred             Hhhhhhhhhhhcc-----chhHH-HhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCcc
Q 011720           74 VFGILGGGVYNIF-----GPRVT-LAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTAT  147 (479)
Q Consensus        74 ig~l~~g~l~d~~-----Grk~~-l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~  147 (479)
                      +++++++|++||+     |||+. +.++.+...+...........++.+.+.+.|++.|++.+...+...++..|+.|++
T Consensus        60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~  139 (491)
T PRK11010         60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE  139 (491)
T ss_pred             HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            5789999999999     99986 44555544442222212112356888999999999999998888899999999999


Q ss_pred             chHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchh-HHHHHHHHHHHHHHHHhccCCcccccCCCCcccccccC
Q 011720          148 RKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKT-YIAFMCFMSAGAALSLAILPPSRVIRDDGTRCTNIKYS  226 (479)
Q Consensus       148 ~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~-~~i~~~l~~l~~~l~~~~~~~~~~~r~d~~~~~~~~~~  226 (479)
                      +||+..++......+|.++|+.+...+..+     .++|+. |++..++..+..+..++ .||++..+++ ++   ..++
T Consensus       140 ~rg~~~~i~~~g~~lG~llg~~l~~~l~~~-----~~GWr~~f~i~a~l~ll~~l~~~~-~~e~~~~~~~-~~---~~~~  209 (491)
T PRK11010        140 ERGAGAAISVLGYRLAMLVSGGLALWLADR-----YLGWQGMYWLMAALLIPCIIATLL-APEPTDTIPV-PK---TLEQ  209 (491)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccCHHHHHHHHHHHHHHHHHHHHh-cCCCcccccc-cc---chhh
Confidence            999999999999999999998877665321     245653 33333434443333333 3432211110 00   0001


Q ss_pred             CHHHHHHHHHHHhhchHHHHHHHHHHHhhh----hhhccccccc--cccccchhhhHHHH-HHHHHHHHHHHHhhhhccc
Q 011720          227 KVSTEAIEILKLFRNWKMLLLFPAAWASNF----FYSYQFNNVN--GLMFNLRTRGLNNV-FYWGAQMLGSVGIGYVMDF  299 (479)
Q Consensus       227 ~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~----~~s~~~~~~~--~~~f~~~~~~l~~~-~~~i~~~i~~~~~g~l~Dr  299 (479)
                      ...++++   +.+++++.+......+....    .+++. +.+.  ..+++..+.++... ...++.+++.++.|++.||
T Consensus       210 ~~~~~l~---~~~~~~~~~~~ll~~~l~~~~~~~~~~~~-~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr  285 (491)
T PRK11010        210 AVVAPLR---DFFGRNNAWLILLLIVLYKLGDAFAMSLT-TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR  285 (491)
T ss_pred             hHHHHHH---HHHcCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1112222   23344443322221111111    11121 3332  23456666677653 4457889999999999999


Q ss_pred             cccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 011720          300 SFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGAL  379 (479)
Q Consensus       300 ~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i  379 (479)
                        +|||+....+.....+.....+.  ..    ..          .   .+........++..+..+...+..+.+..++
T Consensus       286 --~g~~~~l~i~~~l~~l~~l~~~~--l~----~~----------~---~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l  344 (491)
T PRK11010        286 --LSLFRALMIFGILQGVSNAGYWL--LS----IT----------D---KNLYSMGAAVFFENLCGGMGTAAFVALLMTL  344 (491)
T ss_pred             --HhHHHHHHHHHHHHHHHHHHHHH--HH----hc----------c---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              67776544433221111111110  10    00          0   1111122222222222222223345566677


Q ss_pred             cCCchhhhHHHHHHHHHHHHHHHHHh
Q 011720          380 ADDSETLSRYTGFYKGVQSAGAAVAW  405 (479)
Q Consensus       380 ~~~~~~r~~~~~~~~~~~~~g~~i~~  405 (479)
                      . +.+.+++..++.+...++|..+..
T Consensus       345 ~-~~~~~~t~~gl~~s~~~lg~~~~~  369 (491)
T PRK11010        345 C-NKSFSATQFALLSALSAVGRVYVG  369 (491)
T ss_pred             c-CCCCcHHHHHHHHHHHHHHHHHHH
Confidence            7 566678888888888877766543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.76  E-value=8.5e-18  Score=165.47  Aligned_cols=331  Identities=17%  Similarity=0.179  Sum_probs=191.2

Q ss_pred             CCCChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccC-----chhhHHHHHHHHhhh
Q 011720           54 GQLDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHH-----DQTFAVVAGAVLGIG  128 (479)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~-----~~~~li~~R~i~G~g  128 (479)
                      +..++......+++.+.+..+|+++.|++.|++|||+++...+++.++.++..-.. ...     -.+.+.+.|++.|+|
T Consensus        79 g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s-~~~~~~~~~m~~L~~~R~~LGiG  157 (538)
T KOG0252|consen   79 GHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLS-VGTTSPLGVMMTLCFFRFLLGIG  157 (538)
T ss_pred             CcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccC-CCCCCCcchhhHHHHHHHHhhcc
Confidence            44555677778888899999999999999999999999999999988855422211 111     245789999999999


Q ss_pred             hhhhhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhh---cc-CCccccc--chhHHHHHHHHHHHHHH
Q 011720          129 AGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNY---HR-TDAESVN--DKTYIAFMCFMSAGAAL  202 (479)
Q Consensus       129 ~g~~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~---~~-~~~~~~~--~~~~~i~~~l~~l~~~l  202 (479)
                      .|.-+|...++.+|.+..++||...+...+...+|...|.+++..+..   +. +..+...  ...|.+...+.++.+++
T Consensus       158 IGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~  237 (538)
T KOG0252|consen  158 IGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALL  237 (538)
T ss_pred             ccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888888888888877664432   21 1011111  12444445556665554


Q ss_pred             HHhc---cCCccc-----ccC------CCCcccc---c-------ccCCHHHHHHHHHHHhhch--HHHHHHHHHHH-h-
Q 011720          203 SLAI---LPPSRV-----IRD------DGTRCTN---I-------KYSKVSTEAIEILKLFRNW--KMLLLFPAAWA-S-  254 (479)
Q Consensus       203 ~~~~---~~~~~~-----~r~------d~~~~~~---~-------~~~~~~~~~~~~~~~~~~~--r~ll~~~~~~~-~-  254 (479)
                      .+..   .||++.     .++      |..++..   +       ..+..++..+...+.+.++  +.++.....++ . 
T Consensus       238 ~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllD  317 (538)
T KOG0252|consen  238 VLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLD  317 (538)
T ss_pred             HHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4332   244331     011      1111000   0       0001111122222233332  22222222111 1 


Q ss_pred             hhhhhccc--ccccc-cccc--------chhhhHHH-HHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHH
Q 011720          255 NFFYSYQF--NNVNG-LMFN--------LRTRGLNN-VFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAI  322 (479)
Q Consensus       255 ~~~~s~~~--~~~~~-~~f~--------~~~~~l~~-~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~  322 (479)
                      --+|++-+  ..+.+ .++.        ....+..+ +....+.+.|.++...++|+  +|||...+.|+.++.+..+.+
T Consensus       318 iafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~--iGRk~iq~~GF~~~~i~~~~~  395 (538)
T KOG0252|consen  318 IAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI--IGRKYIQLMGFFIMTIFFFVI  395 (538)
T ss_pred             hhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh--hhhHHHHHhhHHHHHHHHHHH
Confidence            11222110  11111 1111        11122222 23333444477788889999  789998888877653222111


Q ss_pred             HHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHH
Q 011720          323 WGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAA  402 (479)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~  402 (479)
                             ..+|++.      . +.  .++.+.+.+..++  .+.+=++.+..+++|.+ |.+.|+..-++.....-+|+.
T Consensus       396 -------~~~y~~~------~-~~--~Gf~v~y~l~~ff--~NFGPn~ttfivpaE~F-ParvR~t~hGIsAA~GK~GAi  456 (538)
T KOG0252|consen  396 -------AGPYNQL------E-NT--IGFVVLYSLTFFF--GNFGPNATTFIVPAEIF-PARVRSTCHGISAASGKAGAI  456 (538)
T ss_pred             -------cCCcccc------c-cc--CceeehHHHHHHH--HhcCCCceeEEeehhhc-hHHHhhhhhhHHHHhccchHH
Confidence                   1223311      1 22  3443444443333  33344444556789999 999999999999988888888


Q ss_pred             HHhh
Q 011720          403 VAWQ  406 (479)
Q Consensus       403 i~~~  406 (479)
                      ++..
T Consensus       457 vg~~  460 (538)
T KOG0252|consen  457 VGAF  460 (538)
T ss_pred             HHHH
Confidence            8765

>TIGR00901 2A0125 AmpG-related permease

Probab=99.72  E-value=1.6e-15  Score=152.32  Aligned_cols=303  Identities=9%  Similarity=-0.032  Sum_probs=169.6

Q ss_pred             hhhhhhhhhcc-----chhHHH-hhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccch
Q 011720           76 GILGGGVYNIF-----GPRVTL-AAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRK  149 (479)
Q Consensus        76 ~l~~g~l~d~~-----Grk~~l-~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~R  149 (479)
                      .++.|+++||+     |||+.+ +.+.+...+............+.+.+...+++.|++.+...++..+++.|+.|+|+|
T Consensus        38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r  117 (356)
T TIGR00901        38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEEL  117 (356)
T ss_pred             HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence            78999999998     899975 455555444222222111124566778888888988888888888999999999999


Q ss_pred             HhHHHHHHHHHHhhhhhhhHHHhhhhhccCC--cccccchh-HHHHHHHHHHHHHHHHhccCCcccccCCCCcccccccC
Q 011720          150 GTYISLFWSIFNMGGVVGGLIPFIMNYHRTD--AESVNDKT-YIAFMCFMSAGAALSLAILPPSRVIRDDGTRCTNIKYS  226 (479)
Q Consensus       150 G~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~--~~~~~~~~-~~i~~~l~~l~~~l~~~~~~~~~~~r~d~~~~~~~~~~  226 (479)
                      +++.++......+|.++|+.+...+..+...  ...+.|+. +++..++.++..++.++..||++..++++ +   ++++
T Consensus       118 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~-~---~~~~  193 (356)
T TIGR00901       118 GYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVP-K---PLTQ  193 (356)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccc-h---hHHH
Confidence            9999999999999999999887655422110  01233654 33333333333333333344322111110 0   0001


Q ss_pred             CHHHHHHHHHHHhhchHHHHHHHHHHHhhhh----hhccccccc-cccccchhhhHHHHHHH-HHHHHHHHHhhhhcccc
Q 011720          227 KVSTEAIEILKLFRNWKMLLLFPAAWASNFF----YSYQFNNVN-GLMFNLRTRGLNNVFYW-GAQMLGSVGIGYVMDFS  300 (479)
Q Consensus       227 ~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~----~s~~~~~~~-~~~f~~~~~~l~~~~~~-i~~~i~~~~~g~l~Dr~  300 (479)
                      +.++.+++.++....++.+.+....+.....    +++. +.+. ..+++..+.++.....+ ++.+++.++.+++.|| 
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r-  271 (356)
T TIGR00901       194 AVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLT-TLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQP-  271 (356)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-
Confidence            1112222222211111243333222222221    1111 2222 23455555566555444 5778999999999999 


Q ss_pred             ccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhc
Q 011720          301 FQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALA  380 (479)
Q Consensus       301 ~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~  380 (479)
                       +|||+....+..... +......    +.....+   .  .+...  +.........++.++..+..++....++.+..
T Consensus       272 -~g~~~~l~~~~~~~~-~~~~~~~----~~~~~~~---~--~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  338 (356)
T TIGR00901       272 -LNILYALLLFGIVQA-LTNAGFV----WLASNGH---H--DGITF--PHLLMLFLTITLEAVTGGLGTVAFVAFLSKLS  338 (356)
T ss_pred             -hhHHHHHHHHHHHHH-HHHHHHH----HHHhcCc---c--ccccc--chHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence             788877555543321 1111111    1000000   0  00001  22334455566677887778887888999999


Q ss_pred             CCchhhhHHHHHHHHHHH
Q 011720          381 DDSETLSRYTGFYKGVQS  398 (479)
Q Consensus       381 ~~~~~r~~~~~~~~~~~~  398 (479)
                       |+++|++.+++++..++
T Consensus       339 -p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       339 -NPKFGATQMALLSSLSA  355 (356)
T ss_pred             -CCCccHHHHHHHHHHHh
Confidence             88999999998876653

>PRK10054 putative transporter; Provisional

Probab=99.72  E-value=1.9e-15  Score=154.23  Aligned_cols=306  Identities=14%  Similarity=0.055  Sum_probs=179.6

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      .++...+...++......+++++.|.++||+|||+.++++.+...+.....  . .+++.+.+++.|.+.|.+.+...+.
T Consensus        40 ~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~g~~~~~~~~~  116 (395)
T PRK10054         40 LSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAI--P-LVNNVTLVVLFFALINCAYSVFSTV  116 (395)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHH--H-HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566677777777788889999999999999999999988766532222  2 3467888888999999888877777


Q ss_pred             hhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCcccccC
Q 011720          136 QGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRVIRD  215 (479)
Q Consensus       136 ~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~~r~  215 (479)
                      ...+..|..|+++|++.+++.....++|..+|+.++..+..     .++++ .+....++..+..++..+..|+++.+++
T Consensus       117 ~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-----~g~~~-~f~~~~~~~~i~~i~~~~~~~~~~~~~~  190 (395)
T PRK10054        117 LKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-----QSINL-PFWLAAICSAFPLVFIQIWVQRSEKAIA  190 (395)
T ss_pred             HHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hccCc-HHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            88888999999999999999999999999999998876532     12333 3333333344443333333332211111


Q ss_pred             CCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhhhh----hccccccc----cccccchhhhHHHHHHHHHHH
Q 011720          216 DGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFY----SYQFNNVN----GLMFNLRTRGLNNVFYWGAQM  287 (479)
Q Consensus       216 d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~~----s~~~~~~~----~~~f~~~~~~l~~~~~~i~~~  287 (479)
                      +       ++++   . ++..+.+++|+++......+...+.+    ++. +.+.    ....+....++......+..+
T Consensus       191 ~-------~~~~---~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  258 (395)
T PRK10054        191 T-------ETGS---V-WSPSVLLQDKALLWFTCSGFLASFVSGAFASCI-SQYVMVVADSDFAEKVVAVVLPVNAAMVV  258 (395)
T ss_pred             c-------chhh---h-hhhhhhccCceehHHHHHHHHHHHHHHHhhhhH-HHHHHHhcccchHHHHHHHHHHhhhhhee
Confidence            0       0000   1 11123445666554433333222211    111 2221    111222233444445555555


Q ss_pred             HHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHH
Q 011720          288 LGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAM  367 (479)
Q Consensus       288 i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  367 (479)
                      ......|++.||  .+||+....+..... +....    +..    .          .   .+.....+..+..+++...
T Consensus       259 ~~~~~~g~~~~~--~~~~~~l~~~~~~~~-~~~~~----~~~----~----------~---~~~~~~~~~~~~~~~g~~~  314 (395)
T PRK10054        259 SLQYSVGRRLNA--ANIRPLMTAGTLCFV-IGLVG----FIF----S----------G---NSLLLWGMSAAVFTVGEII  314 (395)
T ss_pred             eehhHHHHHHcc--CCchhHHHHHHHHHH-HHHHH----HHH----c----------c---hHHHHHHHHHHHHHHHHHH
Confidence            556677888998  567776555432221 11111    110    0          0   1122223344567777776


Q ss_pred             HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          368 FQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       368 ~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      ..|.....+.+.. |++.|+++++..+ ...+|.+++..+.
T Consensus       315 ~~p~~~~~~~~~~-p~~~~~~~~~~~~-~~~~G~~~Gp~~~  353 (395)
T PRK10054        315 YAPGEYMLIDHIA-PPGMKASYFSAQS-LGWLGAAINPLVS  353 (395)
T ss_pred             HHhhHHHHHHHhC-CcccceehHhHHH-HHHHHHHHHHHHH
Confidence            6676667788888 7788888887654 3445666665544

>TIGR00896 CynX cyanate transporter

Probab=99.72  E-value=1.2e-15  Score=153.12  Aligned_cols=301  Identities=13%  Similarity=0.033  Sum_probs=175.3

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      .++...+...++.+.++.+++++.|+++||+|||+.+.++.++..+...  ..  .+++.+.+++.|++.|+|.+...+.
T Consensus        32 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~g~g~~~~~~~  107 (355)
T TIGR00896        32 MSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGIL--IR--SAPGTALLFAGTALIGVGIAIINVL  107 (355)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHH--HH--HhccHHHHHHHHHHHHHHHHHHhcc
Confidence            3455667778888899999999999999999999999999887665322  22  2467889999999999999998877


Q ss_pred             hhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchh-HHHHHHHHHHHHHHHHhccCCccccc
Q 011720          136 QGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKT-YIAFMCFMSAGAALSLAILPPSRVIR  214 (479)
Q Consensus       136 ~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~-~~i~~~l~~l~~~l~~~~~~~~~~~r  214 (479)
                      .+.++.|..| ++|++.++++.....+|..+|+.+...+..+    ....|+. +.....+..+.   .....|+++.++
T Consensus       108 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~----~~~~w~~~f~~~~~~~~~~---~~~~~~~~~~~~  179 (355)
T TIGR00896       108 LPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQH----SGGHWQQALAWWALPALLA---LLAWIPQVRRRV  179 (355)
T ss_pred             chHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHH---HHHHhhhhcccc
Confidence            7888888875 6899999999999999999998887655321    1112442 22222222221   112223221111


Q ss_pred             CCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhh-hh---hccccccc-cccccchhhhHHHHHHHHHHHHH
Q 011720          215 DDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNF-FY---SYQFNNVN-GLMFNLRTRGLNNVFYWGAQMLG  289 (479)
Q Consensus       215 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~-~~---s~~~~~~~-~~~f~~~~~~l~~~~~~i~~~i~  289 (479)
                      +++.   ..++..       ..+.+++|+.+........... ++   .+. +.+. ..+++..+.++.....+++.+++
T Consensus       180 ~~~~---~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-p~~~~~~g~~~~~~g~~~~~~~~~~i~~  248 (355)
T TIGR00896       180 AANQ---TTTRLT-------PVRIWRSPLAWQVTVFFGLQSGLYYSLIGWL-PAILISHGASAATAGSLLALMQLAQAAS  248 (355)
T ss_pred             CCCC---CCCCCC-------CchhhcCHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            1000   000001       1123345555443322222111 11   111 3332 23455556677777889999999


Q ss_pred             HHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHH
Q 011720          290 SVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQ  369 (479)
Q Consensus       290 ~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  369 (479)
                      +++.|++.||.+ +||+....+...+. +....    +.+    .        . .+   ...   ...+++|++.+...
T Consensus       249 ~~~~g~l~dr~~-~~~~~~~~~~~~~~-~~~~~----~~~----~--------~-~~---~~~---~~~~l~g~~~g~~~  303 (355)
T TIGR00896       249 ALLIPALARRVK-DQRGIVAVLAVLQL-VGLCG----LLF----A--------P-MH---GLW---AWALVLGLGQGGAF  303 (355)
T ss_pred             HHhHHHHHhhhc-cchHHHHHHHHHHH-HHHHH----HHH----h--------h-hh---HHH---HHHHHHHHhhhhHh
Confidence            999999999932 45543333332221 11111    111    0        0 01   111   12345677777766


Q ss_pred             HHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHH
Q 011720          370 SMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVA  404 (479)
Q Consensus       370 ~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~  404 (479)
                      +.....+.+...++++++...++.+....++.+++
T Consensus       304 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g  338 (355)
T TIGR00896       304 PLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALG  338 (355)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            65555555554355666777776665555554444

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.72  E-value=1.7e-15  Score=155.70  Aligned_cols=345  Identities=11%  Similarity=0.048  Sum_probs=190.7

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccch-hHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGP-RVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWA  134 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Gr-k~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~  134 (479)
                      .+....+...++...+..+++++.|.++||+|| |+.+.++.++..+.  ..+.. ..++.+.+++.|++.|++.+...+
T Consensus        35 ~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~  111 (418)
T TIGR00889        35 FSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALL--LFFAA-QVTTPAGMFPVLLANSLAYMPTIA  111 (418)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--HHHHH-HhcCHHHHHHHHHHHHHHHccHHH
Confidence            345567777888889999999999999999965 77888777766542  22222 346788999999999998776554


Q ss_pred             hhhhh----hh----cCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhc
Q 011720          135 GQGAI----MT----SYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAI  206 (479)
Q Consensus       135 ~~~~~----i~----e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~  206 (479)
                      ...+.    +.    |......|.|..|.      +|..+|+++...+..      ...|..+.+..++.++..++ .+.
T Consensus       112 ~~~~l~~~~~~~~g~~~~~~~~~~r~~G~------lG~~ig~~l~g~l~~------~~~~~~f~~~~~~~~~~~~~-~~~  178 (418)
T TIGR00889       112 LTNSISYANLPQAGLDVVTDFPPIRVMGT------IGFIAAMWAVSLLDI------ELSNIQLYITAGSSALLGVF-ALT  178 (418)
T ss_pred             HHHHHHHHHHhhcCCCchhcCCCeeeehh------HHHHHHHHHHHHhcc------cchhHHHHHHHHHHHHHHHH-Hhc
Confidence            44332    22    34444556676663      566777766654421      12243344434434443333 333


Q ss_pred             cCCcccccCCCCcccccccCCHHHHHH-HHHHHhhchHHHHHHHHHHHhhh----hhhcccccccc-ccc--------cc
Q 011720          207 LPPSRVIRDDGTRCTNIKYSKVSTEAI-EILKLFRNWKMLLLFPAAWASNF----FYSYQFNNVNG-LMF--------NL  272 (479)
Q Consensus       207 ~~~~~~~r~d~~~~~~~~~~~~~~~~~-~~~~~~~~~r~ll~~~~~~~~~~----~~s~~~~~~~~-~~f--------~~  272 (479)
                      .||++. ++++.      +.+.++..+ +..+.+++|+++.+....+..+.    .+.+. +.+.. .+.        ..
T Consensus       179 ~~e~~~-~~~~~------~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~  250 (418)
T TIGR00889       179 LPDIPV-AKSTA------KMSIKVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFG-NGFLHEFGRNPEFADSFVV  250 (418)
T ss_pred             CCCCCC-Ccccc------ccCHHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhH-HHHHHHhcccccccchhhh
Confidence            444321 11110      011111111 11234566665443333332221    11121 22221 111        12


Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCch
Q 011720          273 RTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFA  352 (479)
Q Consensus       273 ~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (479)
                      ...++......+..+++.+..+++.||  +|||+....+..... +...+    +.    +.+.      +  .  ....
T Consensus       251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr--~g~r~~l~~~~~~~~-v~~~l----~~----~~~~------~--~--~~~~  309 (418)
T TIGR00889       251 KNASIWMSLSQFSEIFFILTIPFFLKR--FGIKKVMLLSLVAWA-LRFGF----FA----YGDP------E--Y--FGYA  309 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHHH-HHHHH----HH----HcCc------c--h--hhHH
Confidence            344666667788888999999999999  689887666544321 11111    11    1100      0  0  1223


Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHH-HHHHHHHHHHhhhcccCcchhH-----HHHHHHHHHH
Q 011720          353 GPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYK-GVQSAGAAVAWQVDTHKVSLLS-----QLIINWSLTT  426 (479)
Q Consensus       353 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~-~~~~~g~~i~~~~~~~~~~~~~-----~~~i~~~~~~  426 (479)
                      ..++..++.|+..+...+....++.+.+ |+++|+++.++.+ ..+++|.+++..+.........     .+-..|....
T Consensus       310 ~l~l~~~l~g~~~~~~~~~~~~~i~~~~-p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~  388 (418)
T TIGR00889       310 LLFLSMIVYGCAFDFFNISGSVFVEKEV-PVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA  388 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence            3444556677777777776677888999 8899999999997 5677888887666542211110     0111222222


Q ss_pred             hhhhhhheeeeeEeccCCCC
Q 011720          427 VSYPLLVVLVMLAVKDDDKS  446 (479)
Q Consensus       427 ~~~~~~~~~v~~~~pet~~~  446 (479)
                      +..+...+..++++||+++.
T Consensus       389 ~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       389 GYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             HHHHHHHHHHHHHhCCcccC
Confidence            23334456667778998633

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.71  E-value=4.2e-15  Score=152.30  Aligned_cols=120  Identities=17%  Similarity=0.166  Sum_probs=102.1

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      .++...+...+..+.++.+++++.|++.||+|||+++.++.+++.+...........++++.++++|++.|+|.|...++
T Consensus        35 ~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~  114 (410)
T TIGR00885        35 LTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETA  114 (410)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhh
Confidence            44556677788888999999999999999999999999999988774333222222467899999999999999999999


Q ss_pred             hhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          136 QGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       136 ~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      ...++.++.|+++|++.+++.+...++|..+|+.+...+.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885       115 ANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             hhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999877653

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.70  E-value=3.6e-15  Score=153.51  Aligned_cols=235  Identities=14%  Similarity=0.147  Sum_probs=159.9

Q ss_pred             hhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhh
Q 011720           59 TAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGA  138 (479)
Q Consensus        59 ~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~  138 (479)
                      ...+...+..+.++.++.+.++++.||+|-|+++.++.++..+.+...-.. ...+.+.+++.|+++|++.|..+++.+.
T Consensus        73 ~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~a-a~~~~~~~~~~R~lqGl~~g~~~pa~~~  151 (466)
T KOG2532|consen   73 TEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLA-ASIGFYLLLVLRFLQGLGQGVLFPAIGS  151 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHH-HHhcchhhHHHHHHhHHHHhHHHhhhhc
Confidence            355667788888889999999999999999999999999888733332222 2345668899999999999999999999


Q ss_pred             hhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccC--CcccccC
Q 011720          139 IMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILP--PSRVIRD  215 (479)
Q Consensus       139 ~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~--~~~~~r~  215 (479)
                      +.+.++|++||++..++..+..++|.+++..++..+-.     ..++|. .|.+..++.++..++.+++..  |+++++-
T Consensus       152 i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~-----s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~i  226 (466)
T KOG2532|consen  152 ILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCE-----SSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNI  226 (466)
T ss_pred             eeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-----cCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Confidence            99999999999999999999999999998877665532     124453 455666666665555444432  3332211


Q ss_pred             CCC---cccccccCCHHH--HHHHHHHHhhchHHHHHHHHHHHhhhh----hhcccccccc--ccccchhhhHHHHHHHH
Q 011720          216 DGT---RCTNIKYSKVST--EAIEILKLFRNWKMLLLFPAAWASNFF----YSYQFNNVNG--LMFNLRTRGLNNVFYWG  284 (479)
Q Consensus       216 d~~---~~~~~~~~~~~~--~~~~~~~~~~~~r~ll~~~~~~~~~~~----~s~~~~~~~~--~~f~~~~~~l~~~~~~i  284 (479)
                      .++   +.+..+.+...+  ..-...+.++++.++......+...+.    ..|. ++|+.  ..|+.++.|+.+....+
T Consensus       227 s~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~-PtY~~~VL~f~v~~~G~~salP~l  305 (466)
T KOG2532|consen  227 SEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYL-PTYLKEVLGFDVRETGFLSALPFL  305 (466)
T ss_pred             CHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHhCCChhhhhHHHHHHHH
Confidence            100   000000000000  000122445677776665554444431    2333 66654  46788899999888899


Q ss_pred             HHHHHHHHhhhhcccc
Q 011720          285 AQMLGSVGIGYVMDFS  300 (479)
Q Consensus       285 ~~~i~~~~~g~l~Dr~  300 (479)
                      ...+..++.|.++||.
T Consensus       306 ~~~~~k~~~g~lsD~l  321 (466)
T KOG2532|consen  306 AMAIVKFVAGQLSDRL  321 (466)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999984

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.69  E-value=1e-14  Score=147.19  Aligned_cols=145  Identities=11%  Similarity=0.054  Sum_probs=117.8

Q ss_pred             CChhh-hhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhh
Q 011720           56 LDPTA-ANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWA  134 (479)
Q Consensus        56 ~~~~~-~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~  134 (479)
                      .++.. .+...+..+.++++..+++|.++||+|.|+.+.++.+.+.+..+....   +++...+.+.|++.|++.|..+ 
T Consensus        58 lT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~f---a~Sl~~L~i~R~llGvaEA~~~-  133 (511)
T TIGR00806        58 FTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLL---GTSVWHMQLMEVFYSVTMAARI-  133 (511)
T ss_pred             CCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-
Confidence            44444 777888999999999999999999999999999999999885555443   4579999999999999999999 


Q ss_pred             hhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhH----HHHHHHHHHHHHHHHhccCCc
Q 011720          135 GQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTY----IAFMCFMSAGAALSLAILPPS  210 (479)
Q Consensus       135 ~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~----~i~~~l~~l~~~l~~~~~~~~  210 (479)
                      +...++..+.|+++|++++|++.+...+|.++|+.++..+.       .++|+.|    .+-...++++.++++++.+|+
T Consensus       134 A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-------s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~  206 (511)
T TIGR00806       134 AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-------TLGWISYSTLNIISLVFMTFSVFLALFLKRPK  206 (511)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCchhHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            88999999999999999999999999999999998877642       1445533    344455666667777765444


Q ss_pred             c
Q 011720          211 R  211 (479)
Q Consensus       211 ~  211 (479)
                      +
T Consensus       207 ~  207 (511)
T TIGR00806       207 R  207 (511)
T ss_pred             h
Confidence            3

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.68  E-value=9.3e-16  Score=164.82  Aligned_cols=118  Identities=14%  Similarity=0.106  Sum_probs=96.8

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhc--------------------------
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNH--------------------------  111 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~--------------------------  111 (479)
                      ....+...+....+.+++.++.+++.||+|||+.+.+|.+++.+....+..+..                          
T Consensus        67 s~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~  146 (633)
T TIGR00805        67 TSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCM  146 (633)
T ss_pred             CCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccccccccc
Confidence            334555667788888999999999999999999999999988874443322210                          


Q ss_pred             ----------------------cCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhH
Q 011720          112 ----------------------HHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGL  169 (479)
Q Consensus       112 ----------------------~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~  169 (479)
                                            ...+.+++++|+++|+|.+..++...+++.|+.|+++|+++++++.....+|+.+|+.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~l  226 (633)
T TIGR00805       147 ENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYL  226 (633)
T ss_pred             CCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHH
Confidence                                  0024567899999999999999999999999999999999999999999999999998


Q ss_pred             HHhhhh
Q 011720          170 IPFIMN  175 (479)
Q Consensus       170 i~~~i~  175 (479)
                      ++..+.
T Consensus       227 lgg~l~  232 (633)
T TIGR00805       227 LGSFCL  232 (633)
T ss_pred             HHHHHH
Confidence            877654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.67  E-value=5.8e-14  Score=143.14  Aligned_cols=302  Identities=15%  Similarity=0.082  Sum_probs=152.2

Q ss_pred             hhhhhhHHHHH-HHHHHHhhhhhhhhhhccchhHHHhhhh-HHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720           58 PTAANNANTAL-YTTFSVFGILGGGVYNIFGPRVTLAAGC-STYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        58 ~~~~~~~~~~~-~~~~aig~l~~g~l~d~~Grk~~l~ig~-~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      +...+...+.. .....++.+.+++ .||+|||+.+++.+ +...+  +..+. ..+++++.+++.+.+.|...+...+.
T Consensus        50 ~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~--~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~  125 (393)
T PRK15011         50 PAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVL--ACTLF-AWNRNYFVLLFVGVFLSSFGSTANPQ  125 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHH--HHHHH-HHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence            44444443333 3345556666677 99999998865544 33323  12222 23567777655544444334455666


Q ss_pred             hhhhhhcCCCccch--HhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchh-HHHHHHHHHHHHHHHHhccCCccc
Q 011720          136 QGAIMTSYPTATRK--GTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKT-YIAFMCFMSAGAALSLAILPPSRV  212 (479)
Q Consensus       136 ~~~~i~e~~~~~~R--G~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~-~~i~~~l~~l~~~l~~~~~~~~~~  212 (479)
                      ...+..|..++++|  +...++.....++|.++|+.++..+..      ..+|+. |++..++.++..++..+..||++.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~  199 (393)
T PRK15011        126 MFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAM------GFSFTVMYLSAAVAFIVCGVMVWLFLPSMRK  199 (393)
T ss_pred             HHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHH------hcChHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence            66777776665545  455678888889999999998876642      245653 333333344433333444454332


Q ss_pred             ccCCCCcccccccCCHHHHHHHHHHHhhchHHHHH---HHHHHHhhhhhhcccccccc--ccccchhhhHHHHHHHHHHH
Q 011720          213 IRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLL---FPAAWASNFFYSYQFNNVNG--LMFNLRTRGLNNVFYWGAQM  287 (479)
Q Consensus       213 ~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~---~~~~~~~~~~~s~~~~~~~~--~~f~~~~~~l~~~~~~i~~~  287 (479)
                      +++++.    .+.+    +.+   +  +++..+..   ..........+....+.+..  .+++..+.++......++.+
T Consensus       200 ~~~~~~----~~~~----~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i  266 (393)
T PRK15011        200 ELPLAT----GTLE----APR---R--NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEI  266 (393)
T ss_pred             CCcccc----cccc----ccc---c--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            111100    0000    001   0  11111111   11111111111111233332  23344455665555566778


Q ss_pred             HHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHH
Q 011720          288 LGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAM  367 (479)
Q Consensus       288 i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  367 (479)
                      ++.++.|++.||  +|||+....+..... +. ...   ..    +.              .+........+..++..+.
T Consensus       267 ~~~~~~G~l~dr--~g~~~~~~~~~~~~~-~~-~~~---~~----~~--------------~~~~~~l~~~~l~~~~~g~  321 (393)
T PRK15011        267 PTMLIAGYFAKR--LGKRFLMRVAAVAGV-CF-YAG---ML----MA--------------HSPAILLGLQLLNAIYIGI  321 (393)
T ss_pred             HHHHHHHHHHHH--hChHHHHHHHHHHHH-HH-HHH---HH----HH--------------hhHHHHHHHHHHHHHHHHH
Confidence            889999999999  678875444332211 11 110   10    01              0111112222223333333


Q ss_pred             HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          368 FQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       368 ~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      ..+....+..|.. | ++|+++.++++...++|..++..+..
T Consensus       322 ~~~~~~~~~~~~~-p-~~~g~~~~~~~~~~~lg~~~g~~l~G  361 (393)
T PRK15011        322 LGGIGMLYFQDLM-P-GQAGSATTLYTNTSRVGWIIAGSLAG  361 (393)
T ss_pred             HHHHHHHHHHHhC-C-CCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            3333445567877 4 56889999988888888888877664

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.66  E-value=1.3e-14  Score=149.78  Aligned_cols=321  Identities=10%  Similarity=0.019  Sum_probs=181.4

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhc----cchhH-HHhhhhHHHHHHHHHHHhhh-cc--CchhhHHHHHHHHhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNI----FGPRV-TLAAGCSTYVLYAGSFLYYN-HH--HDQTFAVVAGAVLGIG  128 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~----~Grk~-~l~ig~~~~~i~~~~~~~~~-~~--~~~~~li~~R~i~G~g  128 (479)
                      ++...+...++.....++..++.|+++||    +|||+ .++++...+.+....+.... ..  .....+++.+++.+++
T Consensus        33 s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (437)
T TIGR00792        33 SAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLF  112 (437)
T ss_pred             CHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHH
Confidence            45566677777778889999999999998    67744 56667666655322222211 01  1145667888999999


Q ss_pred             hhhhhhhhhhhhhcCC-CccchHhHHHHHHHHHHhhhhhhhHHHhhhhh-ccCCcccccchh-HHHHHHHHHHHHHHHHh
Q 011720          129 AGLLWAGQGAIMTSYP-TATRKGTYISLFWSIFNMGGVVGGLIPFIMNY-HRTDAESVNDKT-YIAFMCFMSAGAALSLA  205 (479)
Q Consensus       129 ~g~~~~~~~~~i~e~~-~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~-~~~~~~~~~~~~-~~i~~~l~~l~~~l~~~  205 (479)
                      .+...+...++..|.. ++++|++..++......+|.++++.+...+.. ........+|+. +.+..++..+..++..+
T Consensus       113 ~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~  192 (437)
T TIGR00792       113 YSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFF  192 (437)
T ss_pred             HHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHc
Confidence            8887766677788876 57899999999888888888777665443321 110011234543 23333333333333334


Q ss_pred             ccCCcccccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhhhhh---cccccccccccc-chhhhHHHHH
Q 011720          206 ILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFYS---YQFNNVNGLMFN-LRTRGLNNVF  281 (479)
Q Consensus       206 ~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~~s---~~~~~~~~~~f~-~~~~~l~~~~  281 (479)
                      ..||++..++++    .+++.+..+.+|   +.+++|+++......+.....+.   .....+..+.++ ....+.....
T Consensus       193 ~~~e~~~~~~~~----~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (437)
T TIGR00792       193 GTKERYSEIPKN----IEKKLSLKQIFK---ALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMGSI  265 (437)
T ss_pred             CCEecCCCCCcc----cccCCCHHHHHH---HHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecCChHHHHHHHHH
Confidence            444432111110    011123333332   23456665544433332222111   111111121122 2334455556


Q ss_pred             HHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHH
Q 011720          282 YWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSY  361 (479)
Q Consensus       282 ~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (479)
                      ..++.+++.++.+++.||  +|||+....+..... +....    +.+    .           .  .+........++.
T Consensus       266 ~~i~~ii~~~~~~~l~~r--~g~~~~~~~~~~~~~-~~~~~----~~~----~-----------~--~~~~~~~~~~~~~  321 (437)
T TIGR00792       266 AIVAGLIGVLLFPRLVKK--FGRKILFAGGILLMV-LGYLI----FFF----A-----------G--SNLPLILVLIILA  321 (437)
T ss_pred             HHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHHH-HHHHH----HHH----c-----------c--hhHHHHHHHHHHH
Confidence            688899999999999999  678887666543321 11111    111    0           0  1122334455567


Q ss_pred             HhhHHHHHHHHHHHHHHhcC------CchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          362 GLLDAMFQSMVYWVIGALAD------DSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       362 g~~~~~~~~~~~~~~~~i~~------~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      +++.+..++..+.++++..+      +.+.++.+.|++++.+.+|.+++..+.
T Consensus       322 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~  374 (437)
T TIGR00792       322 GFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLV  374 (437)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777778777651      245678889999999988888875543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.66  E-value=8.4e-15  Score=150.60  Aligned_cols=318  Identities=15%  Similarity=0.037  Sum_probs=159.8

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchh-hHHHHHHHHhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQT-FAVVAGAVLGIGAGLLWA  134 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~-~li~~R~i~G~g~g~~~~  134 (479)
                      .++...+...++......+++++.|.++||+|||+.+.++..+..+..........++... ..+.+.++.|+..+..+.
T Consensus        43 ~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (420)
T PRK09528         43 LSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFL  122 (420)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            3456677778888888999999999999999999999887665544222211110000000 112223333333333222


Q ss_pred             hhhhhhhcCCC--ccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCccc
Q 011720          135 GQGAIMTSYPT--ATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRV  212 (479)
Q Consensus       135 ~~~~~i~e~~~--~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~  212 (479)
                      .....+.++.+  +++||+.+|......++|..+|+.+...+..     .++++ .+++..++.++..++.++.+||++.
T Consensus       123 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-----~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~  196 (420)
T PRK09528        123 AGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN-----INPQI-NFWLGSGSALILLVLLFFAKPDAPS  196 (420)
T ss_pred             cchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh-----cCchH-hHHHHHHHHHHHHHHHhcccccccc
Confidence            22222222222  3456778888888888999999988765532     12322 3333333333333333444443322


Q ss_pred             ccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhhhh---hcccccccc-----ccccchhhhHHHHHHHH
Q 011720          213 IRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFY---SYQFNNVNG-----LMFNLRTRGLNNVFYWG  284 (479)
Q Consensus       213 ~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~~---s~~~~~~~~-----~~f~~~~~~l~~~~~~i  284 (479)
                      ++++.++ +.++++  +.+.++..+.+++|+++.+..........+   ...++.+..     ...+....++......+
T Consensus       197 ~~~~~~~-~~~~~~--~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  273 (420)
T PRK09528        197 TAKVANA-LGANAS--AVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVF  273 (420)
T ss_pred             hhhhccc-hhcccc--cccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence            1110000 000011  112333444556665433222111111111   001122211     12233344566666777


Q ss_pred             HHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhh
Q 011720          285 AQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLL  364 (479)
Q Consensus       285 ~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  364 (479)
                      ...++.++.|++.||  +|||+....+..... +....    +.    +           .   .+........++.++.
T Consensus       274 ~~~~~~~~~g~l~dr--~g~~~~~~~~~~l~~-~~~~l----~~----~-----------~---~~~~~~~~~~~l~g~~  328 (420)
T PRK09528        274 LEALIMFFAPFIINR--IGAKNALLLAGTIMA-VRIIG----SG----F-----------A---TGPLEVSILKLLHAFE  328 (420)
T ss_pred             HHHHHHHHHHHHHHH--hCcchhhHHHHHHHH-HHHHH----HH----h-----------c---ccHHHHHHHHHHHHHH
Confidence            888999999999999  678876544433211 11111    11    1           1   1122334445566666


Q ss_pred             HHHHHHHHHHHHHHhcCCchhhhHHHHH-HHHHHHHHHHHHhhhc
Q 011720          365 DAMFQSMVYWVIGALADDSETLSRYTGF-YKGVQSAGAAVAWQVD  408 (479)
Q Consensus       365 ~~~~~~~~~~~~~~i~~~~~~r~~~~~~-~~~~~~~g~~i~~~~~  408 (479)
                      .+...+....++.+.. |++.++...+. +++...+|..++..+.
T Consensus       329 ~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~lg~~ig~~~~  372 (420)
T PRK09528        329 VPFLLVGVFKYITLNF-DVRLSATIYLVGFQFAKQLGAVFLSTLA  372 (420)
T ss_pred             HHHHHHHHHHHHHHHc-CccceeeeeeehHHHHHHHHHHHHHHHH
Confidence            6665555566778888 67777766544 4555566666654443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.63  E-value=2.6e-14  Score=140.54  Aligned_cols=243  Identities=13%  Similarity=-0.010  Sum_probs=147.0

Q ss_pred             CCCChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhh
Q 011720           54 GQLDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLW  133 (479)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~  133 (479)
                      ...+++...+..++-.+..++.-++-|++.||+|.|+..+++.++..+=..........+++|++++.++++|++.+.+.
T Consensus        44 ~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFa  123 (417)
T COG2223          44 FGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFA  123 (417)
T ss_pred             cCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceeh
Confidence            33455666666777777778888999999999999999999988766522222222223556799999999999998764


Q ss_pred             hhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCccc
Q 011720          134 AGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRV  212 (479)
Q Consensus       134 ~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~  212 (479)
                       .....++++.|||++|.++|++. .-|+|..+...+...+....   +...|+ ...+..+..++..+...+.....+.
T Consensus       124 -v~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~---g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~  198 (417)
T COG2223         124 -VGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF---GFLAWRNVAGIYVVALAIAAVLAWLGMNDVPE  198 (417)
T ss_pred             -cccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence             55678899999999999999998 66777655444443332110   000132 2233344444444444444433222


Q ss_pred             ccCCCCcccccccCCHH-HHHHHHHHHhhchHHHHHHHHHHHh---hhhhhcccccccc--ccccchhhhHHHHHHHHHH
Q 011720          213 IRDDGTRCTNIKYSKVS-TEAIEILKLFRNWKMLLLFPAAWAS---NFFYSYQFNNVNG--LMFNLRTRGLNNVFYWGAQ  286 (479)
Q Consensus       213 ~r~d~~~~~~~~~~~~~-~~~~~~~~~~~~~r~ll~~~~~~~~---~~~~s~~~~~~~~--~~f~~~~~~l~~~~~~i~~  286 (479)
                      .|++.        ++.+ .++|   ..+++|+.+.+..+...+   ...++..++.+..  ++.+..+.+..........
T Consensus       199 ~r~~~--------~~~~~~~~~---~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g  267 (417)
T COG2223         199 HRASV--------KPQLPAQLK---AVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIG  267 (417)
T ss_pred             hhccc--------cccchhHHH---HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Confidence            12211        1111 2233   334566666655443322   1222333354443  3345556667777777788


Q ss_pred             HHHHHHhhhhccccccCccceeeehhhh
Q 011720          287 MLGSVGIGYVMDFSFQSLRTRGLVGIGI  314 (479)
Q Consensus       287 ~i~~~~~g~l~Dr~~~gRr~~~~~g~~~  314 (479)
                      .+..+++|+++||  +|.++..+.....
T Consensus       268 ~l~Rp~GG~LsDR--~Gg~rv~~~~f~~  293 (417)
T COG2223         268 ALARPLGGWLSDR--IGGRRVTLAVFVG  293 (417)
T ss_pred             HHHHhccchhhhh--ccchhHHHHHHHH
Confidence            8899999999999  5555544444433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.62  E-value=2.5e-13  Score=142.10  Aligned_cols=322  Identities=13%  Similarity=0.058  Sum_probs=180.5

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhc-cchhHHHhhhhHHHHHHHHHHHhhhccCch-hhHHHHHHHHhhhhhhhhhh
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNI-FGPRVTLAAGCSTYVLYAGSFLYYNHHHDQ-TFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~-~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~-~~li~~R~i~G~g~g~~~~~  135 (479)
                      ........+.+.....+..+++|+++|| +|||+++++|.+++.+....+..   +.+. ..++++|+++|+|.|...+.
T Consensus        49 ~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~---~~~~~~ll~~~~~l~~ig~g~~~~~  125 (489)
T PRK10207         49 QEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGM---SLLKPDLIFIALGTIAVGNGLFKAN  125 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHH---hccchhHHHHHHHHHHhccccccCC
Confidence            3334444555555666677899999999 99999999999998884333222   3333 34568999999999999988


Q ss_pred             hhhhhhcCCCcc--chHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCccc
Q 011720          136 QGAIMTSYPTAT--RKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRV  212 (479)
Q Consensus       136 ~~~~i~e~~~~~--~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~  212 (479)
                      ..+++.|..|++  +|++.++++....++|..+|+.++..+..+      .+|+ .|.+..+ ..+..++.+.+.++...
T Consensus       126 ~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~------~gw~~~F~i~~i-~~~~~~~~~~~~~~~~~  198 (489)
T PRK10207        126 PASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK------FGYSVTYNLCGA-GLIIALLVYFACRGMVK  198 (489)
T ss_pred             HHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh------hChHHHHHHHHH-HHHHHHHHHHHcchhhc
Confidence            889999998877  458899999999999999999988776432      2343 3333222 22222222222221100


Q ss_pred             c---cCCCCcccc--------------------cccCCH-----------------HHHHHHHHHHhhchHHHHHHHHHH
Q 011720          213 I---RDDGTRCTN--------------------IKYSKV-----------------STEAIEILKLFRNWKMLLLFPAAW  252 (479)
Q Consensus       213 ~---r~d~~~~~~--------------------~~~~~~-----------------~~~~~~~~~~~~~~r~ll~~~~~~  252 (479)
                      +   +.++.+.+.                    ......                 .++.+ .-+.. ++|.+....++.
T Consensus       199 ~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~-~~~~~-r~r~~~~~~l~~  276 (489)
T PRK10207        199 DIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFK-LDKTG-RNKMFVAFVLML  276 (489)
T ss_pred             ccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc-CCHHH-HHHHHHHHHHHH
Confidence            0   000000000                    000000                 00000 00111 234333333221


Q ss_pred             Hhh--h-hhh---ccccccccc-------cccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccce-------eeehh
Q 011720          253 ASN--F-FYS---YQFNNVNGL-------MFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTR-------GLVGI  312 (479)
Q Consensus       253 ~~~--~-~~s---~~~~~~~~~-------~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~-------~~~g~  312 (479)
                      ..-  + .+.   ..++.+.+.       ++.. ..........+..++.+++.+++.||  .+||+.       ..+|.
T Consensus       277 ~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i-~~~~~~~~n~~~iii~~pl~~~l~~r--l~~r~~~~~~~~k~~~G~  353 (489)
T PRK10207        277 EAVVFYILYAQMPTSLNFFAINNVHHEILGFSI-NPVSFQALNPFWVVVASPILAGIYTH--LGSKGKDLSMPMKFTLGM  353 (489)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHhccccccceEE-CHHHHHhHhHHHHHHHHHHHHHHHHH--HhhCCCCCCcHHHHHHHH
Confidence            111  1 011   001111110       1111 11222233455666777888899998  556652       33343


Q ss_pred             hhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHH
Q 011720          313 GIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGF  392 (479)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~  392 (479)
                      .... ++++.... .  ...+.+.      + ..  .+.+.....+++.+++.....+..+....+.. |++.++.+.|+
T Consensus       354 ~l~~-~~~~~~~~-~--~~~~~~~------~-~~--~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~a-P~~~~g~~~g~  419 (489)
T PRK10207        354 FLCS-LGFLTAAA-A--GMWFADA------Q-GL--TSPWFIVLVYLFQSLGELFISALGLAMIAALV-PQHLMGFILGM  419 (489)
T ss_pred             HHHH-HHHHHHHH-H--HHhhcCC------C-Cc--cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC-hHHHHHHHHHH
Confidence            3321 11111100 0  0001111      1 11  33445667888999999999998888888888 88999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 011720          393 YKGVQSAGAAVAWQVD  408 (479)
Q Consensus       393 ~~~~~~~g~~i~~~~~  408 (479)
                      +...+++|+.++-.++
T Consensus       420 ~~l~~~ig~~lg~~l~  435 (489)
T PRK10207        420 WFLTQAAAFLLGGYVA  435 (489)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999987765

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.62  E-value=3.1e-13  Score=141.51  Aligned_cols=137  Identities=18%  Similarity=0.216  Sum_probs=97.9

Q ss_pred             HHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCC
Q 011720           66 TALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPT  145 (479)
Q Consensus        66 ~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~  145 (479)
                      ....+..++++++.|.++|.+|||+.++++.++.++  +..++. .++|...++++-.+.|+|.|..... ...++|..|
T Consensus        85 ~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vv--G~Iv~a-tA~~~~~~iag~~l~GvgaG~~~~~-~~~isEl~p  160 (599)
T PF06609_consen   85 TAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVV--GSIVCA-TAQNMNTFIAGMVLYGVGAGVQELA-ALAISELVP  160 (599)
T ss_pred             HHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHh--HHHHhh-cCCcHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcc
Confidence            345566788889999999999999999999999887  555554 5899999999999999999886544 445789999


Q ss_pred             ccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHH-HHhccCCcc
Q 011720          146 ATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAAL-SLAILPPSR  211 (479)
Q Consensus       146 ~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l-~~~~~~~~~  211 (479)
                      .|.|+...++..........+|+.++..+..    ..+|+|..| +.+++..+++++ .+|..||++
T Consensus       161 ~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~----~~~WRw~~~-~~~i~~~i~~vl~~~fY~PP~~  222 (599)
T PF06609_consen  161 NKWRGLGLAIASIPFIITTWISPLIAQLFAA----HSGWRWIFY-IFIIWSGIALVLIFFFYFPPPR  222 (599)
T ss_pred             cchhhhHhHHHHHHHHhhhcccHHHHHHhcc----CCCcchHHH-HHHHHHHHHHHHHHHHhCCCch
Confidence            9999887776655544444456666554432    245777544 334455555433 445566653

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.62  E-value=1.5e-13  Score=140.08  Aligned_cols=314  Identities=12%  Similarity=0.005  Sum_probs=169.1

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhcc-----CchhhHHHHHHHHhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHH-----HDQTFAVVAGAVLGIGAGL  131 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~-----~~~~~li~~R~i~G~g~g~  131 (479)
                      ++...+...++......++.++.|+++||+|||+.++.+.+.+.+...........     +....++++|++.|++.+.
T Consensus        36 s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  115 (396)
T TIGR00882        36 SKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSA  115 (396)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            45566777888888899999999999999999999998776655422222111001     1233457778889988888


Q ss_pred             hhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCc
Q 011720          132 LWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPS  210 (479)
Q Consensus       132 ~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~  210 (479)
                      ..+....+..|..  +++++..|......++|..+|+.++..+..       .+|+ .+++...+..+..++.++..|++
T Consensus       116 ~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-------~~~~~~f~~~~~~~~~~~~~~~~~~~~~  186 (396)
T TIGR00882       116 GAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-------IDPQIVFWLGSGFALILMLLLMFAKPKA  186 (396)
T ss_pred             chhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-------cCchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            7777777766643  234556677777778899999988764421       2343 23333333443333333334433


Q ss_pred             ccccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhhhhh---ccccccccc-----cccchhhhHHHHHH
Q 011720          211 RVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFYS---YQFNNVNGL-----MFNLRTRGLNNVFY  282 (479)
Q Consensus       211 ~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~~s---~~~~~~~~~-----~f~~~~~~l~~~~~  282 (479)
                      +.++++++..+ .+++  +++.++..+.+++|+++......+.....+.   ..++.+...     ..+....++.....
T Consensus       187 ~~~~~~~~~~~-~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~  263 (396)
T TIGR00882       187 PSSATVANALG-ANAS--AFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMG  263 (396)
T ss_pred             chhhhhhcccc-cccC--CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence            22111000000 0000  1112344455667765544333222211111   111222221     12223345555566


Q ss_pred             HHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHH
Q 011720          283 WGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYG  362 (479)
Q Consensus       283 ~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  362 (479)
                      .+...++....+++.||  +|||+....+..... +....    +.    +.              .+........++.+
T Consensus       264 ~i~~~~~~~~~g~l~~r--~g~~~~l~~~~~l~~-l~~~~----~~----~~--------------~~~~~~~~~~~l~g  318 (396)
T TIGR00882       264 ELLNALIMFCAPLIINR--IGAKNALLIAGTIMS-VRIIG----SS----FA--------------TTALEVVILKMLHA  318 (396)
T ss_pred             HHHHHHHHHHHHHHHHH--hccchhHHHHHHHHH-HHHHH----HH----hc--------------CChHHHHHHHHHHH
Confidence            77788888889999999  678886655543221 11111    10    00              11122344455666


Q ss_pred             hhHHHHHHHHHHHHHHhcCCchhhhHHHHH-HHHHHHHHHHHHhhhc
Q 011720          363 LLDAMFQSMVYWVIGALADDSETLSRYTGF-YKGVQSAGAAVAWQVD  408 (479)
Q Consensus       363 ~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~-~~~~~~~g~~i~~~~~  408 (479)
                      +..+..+.....+..+.. +.+.++++.+. +++...+|..+...+.
T Consensus       319 ~~~~~~~~~~~~~~~~~~-~~~~~at~~~~~~~~~~~lg~~~~~~l~  364 (396)
T TIGR00882       319 FEVPFLLVGCFKYITSQF-DVRLSATIYLIGFQFAKQLAMIFLSTLA  364 (396)
T ss_pred             HHHHHHHHHHHHHHHHhC-CcceEEEeehHHHHHHHHHHHHHHHHhH
Confidence            665554444444555555 55666665555 5566777777775443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.61  E-value=3.5e-13  Score=136.83  Aligned_cols=303  Identities=11%  Similarity=-0.005  Sum_probs=180.5

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhH----HHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRV----TLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGL  131 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~----~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~  131 (479)
                      .+....+...++......+++++.++++||+|||.    .+.++..++.+   . +.. .+++.+.+++.|++.|.+.+.
T Consensus        36 ~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~---~-~~~-~~~~~~~l~~~~~l~~~~~~~  110 (382)
T TIGR00902        36 LGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA---A-FSA-GAHNAWLLFIAIGLFALFFSA  110 (382)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH---H-HHH-hhhhHHHHHHHHHHHHHHHcc
Confidence            34666777788888888999999999999999843    33333332222   1 111 346799999999999999888


Q ss_pred             hhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchh-HHHHHHHHHHHHHHHHhccCCc
Q 011720          132 LWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKT-YIAFMCFMSAGAALSLAILPPS  210 (479)
Q Consensus       132 ~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~-~~i~~~l~~l~~~l~~~~~~~~  210 (479)
                      ..+...++..+.  +++|++..|......++|.++|+.+...+..+      ++|+. +.+...+ .+..++.+.++|+.
T Consensus       111 ~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~------~g~~~~f~~~~~~-~~~~~~~~~~~~~~  181 (382)
T TIGR00902       111 GMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM------FDEQNILAILTAG-LAFMLIGFLIKPTI  181 (382)
T ss_pred             chhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH------cChhHHHHHHHHH-HHHHHHHHHcCCCC
Confidence            777777776553  57899999999999999999999987766432      34442 2222222 22122222333221


Q ss_pred             ccccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhh----hhhccccccc-cccccchhhhHHHHHHHHH
Q 011720          211 RVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNF----FYSYQFNNVN-GLMFNLRTRGLNNVFYWGA  285 (479)
Q Consensus       211 ~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~----~~s~~~~~~~-~~~f~~~~~~l~~~~~~i~  285 (479)
                      +.++++ ++   ++++    +.++..+.+++|+++......+..+.    ++++. +.+. ..+.+....++......++
T Consensus       182 ~~~~~~-~~---~~~~----~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~-~~~l~~~g~s~~~~g~l~~~~~~~  252 (382)
T TIGR00902       182 PPKDAI-PE---DESQ----GDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFS-AIYWQAAGISASATGLLWGIGVLA  252 (382)
T ss_pred             CCCccc-cc---cccc----cchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCCHhHHHHHHHHHHHH
Confidence            111111 00   0011    11223355677776554443332221    22322 3332 2344555667766678888


Q ss_pred             HHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhH
Q 011720          286 QMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLD  365 (479)
Q Consensus       286 ~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  365 (479)
                      ++++..+.+++.||  +|+|+....+....    ..-|.. +.    +            .  ++.+......++.|+..
T Consensus       253 ~i~~~~~~~~l~~r--~g~~~~l~~~~~~~----~~~~~~-~~----~------------~--~~~~~~~~~q~l~g~~~  307 (382)
T TIGR00902       253 EIIIFAFSNKLFQN--CSARDLLLISAIAC----VGRWAI-IG----A------------I--EAFPLIFLLQILHCGTF  307 (382)
T ss_pred             HHHHHHHhHHHHhh--CCHHHHHHHHHHHH----HHHHHH-HH----h------------H--hhHHHHHHHHHHHHHHH
Confidence            89999999999999  67877655443322    111111 11    0            1  23345566677788877


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhHHHHHHHH-HHHHHHHHHhhhc
Q 011720          366 AMFQSMVYWVIGALADDSETLSRYTGFYKG-VQSAGAAVAWQVD  408 (479)
Q Consensus       366 ~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~-~~~~g~~i~~~~~  408 (479)
                      +...+....++.+.  |+++++++.++++. ...+|..++..+.
T Consensus       308 ~~~~~~~~~~i~~~--~~~~~~~~q~~~~~~~~g~g~~~g~~~~  349 (382)
T TIGR00902       308 AVCHLAAMRYIAAQ--PGSEIAKLQALYNALAMGGLIAIFTAFA  349 (382)
T ss_pred             HHHHHHHHHHHHhC--CHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777666667654  56777888888763 3456666665554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.61  E-value=5.2e-13  Score=136.54  Aligned_cols=224  Identities=15%  Similarity=0.060  Sum_probs=129.2

Q ss_pred             HHhhhhhhhhhhcc-----chhH-HHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCc
Q 011720           73 SVFGILGGGVYNIF-----GPRV-TLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTA  146 (479)
Q Consensus        73 aig~l~~g~l~d~~-----Grk~-~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~  146 (479)
                      .+..+++|+++||+     |||+ .+.++.++..+............+.+.+++..++.++..+...++..+++.|+.|+
T Consensus        46 ~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~  125 (402)
T PRK11902         46 YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP  125 (402)
T ss_pred             HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            46779999999999     8876 56666666544333322221124577788888888888888888889999999999


Q ss_pred             cchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchh-HHHHHHHHHHHHHHHHhccCCcccccCCCCccccccc
Q 011720          147 TRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKT-YIAFMCFMSAGAALSLAILPPSRVIRDDGTRCTNIKY  225 (479)
Q Consensus       147 ~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~-~~i~~~l~~l~~~l~~~~~~~~~~~r~d~~~~~~~~~  225 (479)
                      ++|+++.++......+|.++|+.+...+...     .++|+. +++..++..+..+. .+..||++. ++++.+   +.+
T Consensus       126 ~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~-----~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~-~~~~~~---~~~  195 (402)
T PRK11902        126 EERGAGAAVKVLGYRLAMLVSGGLALWLADR-----VLGWGNTYLLMAGLMLAGALT-TLWAPEPEV-PARPPR---SLG  195 (402)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc-----ccCHHHHHHHHHHHHHHHHHH-HHhcCCCcc-cccccc---hhH
Confidence            9999999999999999999998877655321     135653 33333333332222 233343221 110000   000


Q ss_pred             CCHHHHHHHHHHHhhchHHHHHHHHHHHhh----hhhhccccccc--cccccchhhhHHHHHHH-HHHHHHHHHhhhhcc
Q 011720          226 SKVSTEAIEILKLFRNWKMLLLFPAAWASN----FFYSYQFNNVN--GLMFNLRTRGLNNVFYW-GAQMLGSVGIGYVMD  298 (479)
Q Consensus       226 ~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~----~~~s~~~~~~~--~~~f~~~~~~l~~~~~~-i~~~i~~~~~g~l~D  298 (479)
                      ++..   ++..+.+++|+++......+...    ..+++. ..+.  ..+++..+.++.....+ ++.+++.++.+++.|
T Consensus       196 ~~~~---~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~-~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~  271 (402)
T PRK11902        196 EAVV---GPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLS-TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMV  271 (402)
T ss_pred             HHHH---HHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHH-HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            1111   22223445555433322211111    111111 1111  12345555666554444 457899999999999


Q ss_pred             ccccCccceeeehh
Q 011720          299 FSFQSLRTRGLVGI  312 (479)
Q Consensus       299 r~~~gRr~~~~~g~  312 (479)
                      |  +|||+....+.
T Consensus       272 r--~g~~~~l~~~~  283 (402)
T PRK11902        272 R--LGLYRSLMLFG  283 (402)
T ss_pred             H--HhHHHHHHHHH
Confidence            9  67777554443

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=99.60  E-value=7e-15  Score=128.23  Aligned_cols=119  Identities=29%  Similarity=0.571  Sum_probs=110.8

Q ss_pred             CCChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhh
Q 011720           55 QLDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWA  134 (479)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~  134 (479)
                      ..+++.+..++++.|..++++++++|++.+++|.|+++++|.+.|.+|.++++.+    +.+.++.+.++.|+|.+..|+
T Consensus        33 ~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~----~~~~l~~~s~l~G~~~a~lW~  108 (156)
T PF05978_consen   33 SISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYP----NSYTLYPASALLGFGAALLWT  108 (156)
T ss_pred             cccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHhhhhHHhhH
Confidence            3456789999999999999999999999999999999999999999999998765    588999999999999999999


Q ss_pred             hhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhc
Q 011720          135 GQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYH  177 (479)
Q Consensus       135 ~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~  177 (479)
                      +++.++++++++++|+|..+++|...+.+.++|+++.+.+...
T Consensus       109 aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~~  151 (156)
T PF05978_consen  109 AQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQG  151 (156)
T ss_pred             hhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999887543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.60  E-value=8.5e-14  Score=134.49  Aligned_cols=113  Identities=20%  Similarity=0.157  Sum_probs=92.5

Q ss_pred             hhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhh
Q 011720           60 AANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAI  139 (479)
Q Consensus        60 ~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~  139 (479)
                      .++..-+.+.....++++.+|.++||+|||+++.++.+...+   +++..+.+.|+..++++|++.|+.-|-.. ..-++
T Consensus        69 yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~---s~ll~~~S~~F~afv~aR~l~Gi~kgnl~-v~rAi  144 (451)
T KOG2615|consen   69 YAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVAL---SYLLWALSRNFAAFVLARFLGGIFKGNLS-VIRAI  144 (451)
T ss_pred             hhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhccCchH-HHHHH
Confidence            444445556666788889999999999999999999987665   32222246788778888999999999875 45689


Q ss_pred             hhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhh
Q 011720          140 MTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNY  176 (479)
Q Consensus       140 i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~  176 (479)
                      ++|+.++|+|++.++.....+.+|.++||.|+.++..
T Consensus       145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            9999999999999999999999999999999987754

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.59  E-value=3.6e-13  Score=136.77  Aligned_cols=302  Identities=11%  Similarity=-0.029  Sum_probs=171.0

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchh----HHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPR----VTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLL  132 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk----~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~  132 (479)
                      ++...+...++......+++++.|+++||+|||    +.+.++..+..+   .. . ..+++.+.+++.|++.|++.+..
T Consensus        37 s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~---~~-~-~~~~~~~~l~i~~~l~g~~~~~~  111 (382)
T PRK11128         37 TPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAV---AF-W-FGAHSFWLLFVAIGLFNLFFSPL  111 (382)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHH---HH-H-HhcccHHHHHHHHHHHHHHHccc
Confidence            466677778888888889999999999999983    333333332211   11 1 12477999999999999999888


Q ss_pred             hhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchh-HHHHHHHHHHHHHHHHhccCCcc
Q 011720          133 WAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKT-YIAFMCFMSAGAALSLAILPPSR  211 (479)
Q Consensus       133 ~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~-~~i~~~l~~l~~~l~~~~~~~~~  211 (479)
                      ++...++..++  +++|++..+......++|..+|+.++..+..+      ++|+. +++..+...+. ++..++.|+++
T Consensus       112 ~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~------~g~~~~f~~~~~~~~~~-~~~~~~~~~~~  182 (382)
T PRK11128        112 VPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW------FGEQAILWILTAGVASM-LLGQLLRPTIM  182 (382)
T ss_pred             ccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH------cChhHHHHHHHHHHHHH-HHHHHccCCCC
Confidence            88777776665  45688888888888899999999998866422      34543 33222222222 22223333221


Q ss_pred             cccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhh----hhhccccccc-cccccchhhhHHHHHHHHHH
Q 011720          212 VIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNF----FYSYQFNNVN-GLMFNLRTRGLNNVFYWGAQ  286 (479)
Q Consensus       212 ~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~----~~s~~~~~~~-~~~f~~~~~~l~~~~~~i~~  286 (479)
                      . + ++++.  + .++..   ++..+.+++|+++......+..+.    .+++. +.+. ..+.+..+.++......++.
T Consensus       183 ~-~-~~~~~--~-~~~~~---~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~  253 (382)
T PRK11128        183 P-Q-GESRQ--Q-ESAGW---PAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFS-AIYWQAAGYSASTIGYLWSLGVVAE  253 (382)
T ss_pred             C-c-ccccc--c-ccccc---chHHHHHcChhHHHHHHHHHHHHHHhHhHHHHH-HHHHHHCCCCHhHHHHHHHHHHHHH
Confidence            1 1 11000  0 00001   122344566766554433232221    11222 2222 23345555666666677888


Q ss_pred             HHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHH
Q 011720          287 MLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDA  366 (479)
Q Consensus       287 ~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  366 (479)
                      ++..++.+++.||  +++|+....+..... +....    +.    +           .   .+.+......++.|+..+
T Consensus       254 ~~~~~~~g~l~~r--~~~~~~l~~~~~~~~-~~~~~----~~----~-----------~---~~~~~~~~~~~l~g~~~~  308 (382)
T PRK11128        254 VLIFAFSNRLFRR--WSARDLLLLSAICGV-VRWGL----MG----S-----------T---TALPWLIVIQILHCGTFT  308 (382)
T ss_pred             HHHHHHHHHHHHH--CCHHHHHHHHHHHHH-HHHHH----HH----h-----------h---hhHHHHHHHHHHHHHHHH
Confidence            8888899999999  678876554433221 11111    10    0           1   122334445666777766


Q ss_pred             HHHHHHHHHHHHhcCCchhhhHHHHHHHHH-HHHHHHHHhhhc
Q 011720          367 MFQSMVYWVIGALADDSETLSRYTGFYKGV-QSAGAAVAWQVD  408 (479)
Q Consensus       367 ~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~-~~~g~~i~~~~~  408 (479)
                      ..++....+..+..  ++++++..+.+... +.+|..++..+.
T Consensus       309 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~ig~~i~  349 (382)
T PRK11128        309 VCHLAAMRYIAARP--GSEVIRLQALYSALAMGGSIAIMTVLS  349 (382)
T ss_pred             HHHHHHHHHHHHCC--HhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66665555666643  45567777777633 344445554443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.59  E-value=1.6e-12  Score=135.65  Aligned_cols=117  Identities=14%  Similarity=0.156  Sum_probs=96.9

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhc-cchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNI-FGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWA  134 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~-~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~  134 (479)
                      .++...+...+.......++++++|+++|| +|||+++.++.+++.+...  ... .+++.+.++++|++.|+|.|...+
T Consensus        45 ~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~--~~~-~~~~~~~~~~~~~l~g~g~g~~~~  121 (475)
T TIGR00924        45 FSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHF--MLA-MSIYPDLIFYGLGTIAVGSGLFKA  121 (475)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHH--HHH-hcccHhHHHHHHHHHHhccccccC
Confidence            345566667777788888999999999999 8999999999998776332  222 345678889999999999999888


Q ss_pred             hhhhhhhcCCCccc---hHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          135 GQGAIMTSYPTATR---KGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       135 ~~~~~i~e~~~~~~---RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      ...++++|..|+++   |++.+++++...++|..+|+.+...+.
T Consensus       122 ~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~  165 (475)
T TIGR00924       122 NPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA  165 (475)
T ss_pred             CHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH
Confidence            88899999887654   899999999999999999999887664

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=1.9e-14  Score=139.73  Aligned_cols=306  Identities=18%  Similarity=0.224  Sum_probs=192.8

Q ss_pred             hhhhHHHHHHHHHHHh----hhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720           60 AANNANTALYTTFSVF----GILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        60 ~~~~~~~~~~~~~aig----~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      ..+...+++++..++.    +++.|++.||+|+|..+++|..+...-++.+   +...++++++++|.++|+|.++.+++
T Consensus       103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilF---afg~sy~~l~vAR~LQgvgsA~~~ts  179 (464)
T KOG3764|consen  103 RENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILF---AFGNSYPMLFVARSLQGVGSAFADTS  179 (464)
T ss_pred             ccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHH---HHcchhHHHHHHHHHhhhhHHHHHhh
Confidence            4555677777777665    5789999999999999999998766532222   24578999999999999999999999


Q ss_pred             hhhhhhcCCCc-cchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccc-hhHHHHHHHHHHHHHHHHhccCCcccc
Q 011720          136 QGAIMTSYPTA-TRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVND-KTYIAFMCFMSAGAALSLAILPPSRVI  213 (479)
Q Consensus       136 ~~~~i~e~~~~-~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~-~~~~i~~~l~~l~~~l~~~~~~~~~~~  213 (479)
                      ..+++++..|+ ++||+.+|+...+..+|.++||-++..+ |..     .+. .-|++..++.++-..+.++..+|++.+
T Consensus       180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGil-Ye~-----~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~  253 (464)
T KOG3764|consen  180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGIL-YEF-----AGKSAPFLVLAIVLLLDGALQLLVIEPTEMD  253 (464)
T ss_pred             hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccch-Hhh-----cCCcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence            99999987764 5689999999999999999999998765 431     233 346666666666677777777775432


Q ss_pred             cCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhhhhhcccccc---cccccc-c-hhhhHHHHHHHHHHHH
Q 011720          214 RDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFYSYQFNNV---NGLMFN-L-RTRGLNNVFYWGAQML  288 (479)
Q Consensus       214 r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~~s~~~~~~---~~~~f~-~-~~~~l~~~~~~i~~~i  288 (479)
                      .+ ..    ++       -+..|+.+++|.+++.......++...++.-+++   ....+. . ...++..+...+...+
T Consensus       254 ~~-~~----~~-------~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~i  321 (464)
T KOG3764|consen  254 PD-ST----EQ-------GTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAI  321 (464)
T ss_pred             cc-cc----cc-------CccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhc
Confidence            11 00    01       1235677788888887766666665444432322   111121 1 2457777778888999


Q ss_pred             HHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHH
Q 011720          289 GSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMF  368 (479)
Q Consensus       289 ~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  368 (479)
                      ++.+.|.+.||+.=.|.   +.++..+.+.....      ...++.+       .+.   .-+.-.+.+.+..+..|+..
T Consensus       322 g~~lfg~la~k~~~~~w---l~~~~gl~~~G~~~------~~iP~~~-------~~~---~L~vp~~~l~~~i~~~dasl  382 (464)
T KOG3764|consen  322 GTNLFGKLADKYPHLRW---LLSLGGLATVGVSS------GPIPFAT-------SIA---QLWVPNFGLGFGIGLADASL  382 (464)
T ss_pred             cCchHHHHHHhcCchhH---HHHHHHHHHHHHHh------chhHhhh-------hHH---HHhhhhHHHHHHHHHHHHHH
Confidence            99999999999432242   22222221111111      1111111       111   11111233344445555555


Q ss_pred             HHHHHHHHHHhcCCchhhh---HHHHHHHHHHHHHHHHHhhhcccC
Q 011720          369 QSMVYWVIGALADDSETLS---RYTGFYKGVQSAGAAVAWQVDTHK  411 (479)
Q Consensus       369 ~~~~~~~~~~i~~~~~~r~---~~~~~~~~~~~~g~~i~~~~~~~~  411 (479)
                      .|    ..+.+. |.++..   .+ +....+...+.++++.++|..
T Consensus       383 ~P----~l~~lv-d~rh~s~~~vY-GsVyaIad~a~sla~a~GP~~  422 (464)
T KOG3764|consen  383 IP----TLGYLV-DPRHVSGFNVY-GSVYAIADAAFSLAYAIGPTF  422 (464)
T ss_pred             hh----hhHHhc-chhhcccccee-eeHHHHHHHHHHHhhhccccc
Confidence            44    455666 555543   33 334445667788888888754

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.56  E-value=2.1e-12  Score=135.68  Aligned_cols=102  Identities=15%  Similarity=0.219  Sum_probs=79.8

Q ss_pred             HHHhhhhhhhhhhc-cchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccc--
Q 011720           72 FSVFGILGGGVYNI-FGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATR--  148 (479)
Q Consensus        72 ~aig~l~~g~l~d~-~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~--  148 (479)
                      ....++++|+++|| +|||+++.++.+++.+.  ..++....++.+.++++|++.|+|.|...+...+++.|+.|+++  
T Consensus        70 ~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig--~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~  147 (500)
T PRK09584         70 VYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIG--YALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR  147 (500)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh
Confidence            34445789999999 59999999999888763  23322112345677889999999999988888889999887543  


Q ss_pred             hHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          149 KGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       149 RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      |++.+++++...++|..+|+.+...+.
T Consensus       148 ~~~~~~~~~~~~~iG~~~gp~i~g~l~  174 (500)
T PRK09584        148 LDGAFTMYYMSINIGSFFSMLATPWLA  174 (500)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            556889999999999999999987764

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.51  E-value=9.2e-13  Score=137.37  Aligned_cols=315  Identities=18%  Similarity=0.139  Sum_probs=193.4

Q ss_pred             hhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhH-HHHHHHHhhhhhhhhhhhhhh
Q 011720           61 ANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFA-VVAGAVLGIGAGLLWAGQGAI  139 (479)
Q Consensus        61 ~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~l-i~~R~i~G~g~g~~~~~~~~~  139 (479)
                      .....++......+.+++++.+.||+|.|.+.++|.++..+   +++...+++++|++ +...++.|+|.|+.+..+.++
T Consensus        83 ~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~---g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paivi  159 (509)
T KOG2504|consen   83 IAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAAL---GLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVI  159 (509)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhh
Confidence            55666777777778889999999999999999999998776   43333356788775 668999999999999888888


Q ss_pred             hhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCcccc------
Q 011720          140 MTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRVI------  213 (479)
Q Consensus       140 i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~~------  213 (479)
                      +..++ +++|+.++|+-.+...+|.++=+.+.-.+...    -+|++. .+++..+.+-..+.....+|..+..      
T Consensus       160 v~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~----~G~r~~-~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~  233 (509)
T KOG2504|consen  160 LGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSK----YGWRGA-LLIFGGISLNVLVAGALLRPLSPPKKPNEEK  233 (509)
T ss_pred             hhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHH----hCcHHH-HHHHHHHHHHHHHHHHHcCCCCcCCCchhhh
Confidence            88765 78899999999887777765544443333211    123332 2333333333334455666622110      


Q ss_pred             -----------------cC-----CCCcc----c---cc-ccCCHH--HH-HHHH---HHHhhchHHHHHHHHHHHhhh-
Q 011720          214 -----------------RD-----DGTRC----T---NI-KYSKVS--TE-AIEI---LKLFRNWKMLLLFPAAWASNF-  256 (479)
Q Consensus       214 -----------------r~-----d~~~~----~---~~-~~~~~~--~~-~~~~---~~~~~~~r~ll~~~~~~~~~~-  256 (479)
                                       ++     .+...    .   .+ .++...  .+ ....   ++.+++|.++++..-..+..+ 
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g  313 (509)
T KOG2504|consen  234 DLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLG  313 (509)
T ss_pred             hhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHH
Confidence                             00     00000    0   00 000000  11 1111   355667665554433222222 


Q ss_pred             -hhh-ccccccc-cccccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhccc
Q 011720          257 -FYS-YQFNNVN-GLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNY  333 (479)
Q Consensus       257 -~~s-~~~~~~~-~~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~  333 (479)
                       ... ..++.+. ..+++..+.+......++..+++.++.|++.|+.++.++.....+.....+..  ++       .+ 
T Consensus       314 ~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~--~~-------~p-  383 (509)
T KOG2504|consen  314 FNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR--LF-------LP-  383 (509)
T ss_pred             HHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH--HH-------HH-
Confidence             111 1112222 23456666777777889999999999999999964323332222222211110  11       10 


Q ss_pred             CCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          334 SHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                                 ..  ..+.......+++|+..+.+......++.++. +.++...++|+...+++++..++--+.
T Consensus       384 -----------~~--~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~-g~~~l~~a~Gl~l~~~gi~~l~gpPia  444 (509)
T KOG2504|consen  384 -----------FA--TTYVGLIVFSILFGFCVGSFSSLTPVILVDLV-GLEKLSNAYGLLLLFQGIGALVGPPIA  444 (509)
T ss_pred             -----------Hh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ChhhcchHHHHHHHHhHHHHHcCcccc
Confidence                       11  34567788889999999999997777888999 788889999999988888877775544

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.51  E-value=6.1e-13  Score=127.79  Aligned_cols=312  Identities=13%  Similarity=0.105  Sum_probs=189.0

Q ss_pred             hhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhh
Q 011720           60 AANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAI  139 (479)
Q Consensus        60 ~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~  139 (479)
                      ...+.....+.++-+++..+|.++|++|||+...+..++-.+  .+.+. ..++|+..+.+.|.+.|+|.|. .+...++
T Consensus       114 q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v--~~~is-~~spnf~~L~~f~~l~~~g~gg-~pv~~~~  189 (528)
T KOG0253|consen  114 QAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGV--FGVIS-GASPNFASLCVFRALWGFGVGG-LPVDSAI  189 (528)
T ss_pred             hhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHH--HHHhh-cCCCCeehhhHHHHHHhccCCC-ccHhHHH
Confidence            344456677888999999999999999999999988876554  23332 2578999999999999999998 5666777


Q ss_pred             hhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCccc-----cc
Q 011720          140 MTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRV-----IR  214 (479)
Q Consensus       140 i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~-----~r  214 (479)
                      -.|.-|..+|+..+-.. ..+.+|.+....+..+...+    -+|+|..+.....+++. +. ..+..||++.     .+
T Consensus       190 yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~----~gwr~~l~~~~~pl~~~-a~-f~~w~~ESpRf~~~~G~  262 (528)
T KOG0253|consen  190 YLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSN----FGWRYLLFTSSTPLMFA-AR-FLVWVYESPRFYLAKGD  262 (528)
T ss_pred             HHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHhHHHHH-HH-HHhhcccCcchhhhcCC
Confidence            78999999999988777 88899999999999877532    12444433332222222 22 2344566642     11


Q ss_pred             C-------------CCCccc-----------ccccCC--------HHHHHH-HHHHHh---hchHHHHHHHHHHHhhh-h
Q 011720          215 D-------------DGTRCT-----------NIKYSK--------VSTEAI-EILKLF---RNWKMLLLFPAAWASNF-F  257 (479)
Q Consensus       215 ~-------------d~~~~~-----------~~~~~~--------~~~~~~-~~~~~~---~~~r~ll~~~~~~~~~~-~  257 (479)
                      +             .+.+..           .+++++        ..+|-+ ++..++   .||+.+++....+...+ +
T Consensus       263 ~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsy  342 (528)
T KOG0253|consen  263 DYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSY  342 (528)
T ss_pred             hHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHH
Confidence            1             111000           000000        000100 111111   24455554444443333 1


Q ss_pred             hhccc-cc--------------cccccccc-------hhhhH-HHHHHHHHHHHHHHHhhhhccccccCccceeeehhhh
Q 011720          258 YSYQF-NN--------------VNGLMFNL-------RTRGL-NNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGI  314 (479)
Q Consensus       258 ~s~~~-~~--------------~~~~~f~~-------~~~~l-~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~  314 (479)
                      |+.++ .+              .+++....       ...-+ -.+......+-|.++.+.+.||  +|||+.+-...+.
T Consensus       343 yg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iver--lGRKkTMal~l~~  420 (528)
T KOG0253|consen  343 YGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVER--LGRKKTMALSLIL  420 (528)
T ss_pred             HHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHH--hcchhHHHHHHHH
Confidence            11110 00              00000000       01112 1344567788999999999999  8899854433322


Q ss_pred             hHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHH
Q 011720          315 VALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYK  394 (479)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~  394 (479)
                      ..+..+.+.          .        . .   ...+....+|..-.+.++++|. .|.|.+|++ |...|+.+.|...
T Consensus       421 f~iflfll~----------~--------c-~---~rn~~tvllf~arafisg~fqv-aYvYtPEVy-PTavRatgvGtcS  476 (528)
T KOG0253|consen  421 FGIFLFLLT----------T--------C-K---TRNAYTVLLFTARAFISGAFQV-AYVYTPEVY-PTAVRATGVGTCS  476 (528)
T ss_pred             HHHHHHHHH----------H--------h-c---CcchhHHHHHHHHHHHhchheE-EEEecCccc-chhhhhcchhhhh
Confidence            211111111          0        0 1   2234556677777788888877 899999999 8999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 011720          395 GVQSAGAAVAWQVD  408 (479)
Q Consensus       395 ~~~~~g~~i~~~~~  408 (479)
                      ...-+|..++.++.
T Consensus       477 smaRIggI~~p~iA  490 (528)
T KOG0253|consen  477 SMARIGGIFSPVIA  490 (528)
T ss_pred             hHHhhhhhhhhHHH
Confidence            99999988887765

>TIGR00788 fbt folate/biopterin transporter

Probab=99.49  E-value=1.5e-11  Score=128.23  Aligned_cols=323  Identities=10%  Similarity=-0.010  Sum_probs=176.9

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhccc-----hhHHHhhhhHHHHHHHHHHHhhhccCchh-hHHHHHHHHhhhhhh
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIFG-----PRVTLAAGCSTYVLYAGSFLYYNHHHDQT-FAVVAGAVLGIGAGL  131 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~G-----rk~~l~ig~~~~~i~~~~~~~~~~~~~~~-~li~~R~i~G~g~g~  131 (479)
                      +...+...++..+...+-.+ +|+++|+++     ||+.++++.++...  ..+......++.. ...+..++.+++.+.
T Consensus        60 ~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~--~~~~~l~~~~~~~~~~~~~~~l~~~~~a~  136 (468)
T TIGR00788        60 GARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSA--ILYGLLPGKVSSAKVAAAFIFLAALAKAL  136 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHH--HHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence            34444445566666666555 999999998     88888888766521  1211111123433 344589999999999


Q ss_pred             hhhhhhhhhhcCCCccchHh---HHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhcc
Q 011720          132 LWAGQGAIMTSYPTATRKGT---YISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAIL  207 (479)
Q Consensus       132 ~~~~~~~~i~e~~~~~~RG~---~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~  207 (479)
                      .-++.-+++.|..+ ++++.   ..++.+....+|.++|+.++..+...      .+|+ .+.+...+..+..+. .++.
T Consensus       137 ~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~------~~~~~~f~~~a~l~ll~~~~-~~~~  208 (468)
T TIGR00788       137 YDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK------TLTRILFLITAALLLLQLFV-SNLS  208 (468)
T ss_pred             HHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh------cCcchHHHHHHHHHHHHHHH-HHhc
Confidence            88888899999887 44443   34455555668999999888765421      3343 343444444444332 3334


Q ss_pred             CCcc-cccCCCCccc----ccccC----CHHHHHHHHHHHhhchHHHHHHHHHHH--hhhhhhccccc--c--ccccccc
Q 011720          208 PPSR-VIRDDGTRCT----NIKYS----KVSTEAIEILKLFRNWKMLLLFPAAWA--SNFFYSYQFNN--V--NGLMFNL  272 (479)
Q Consensus       208 ~~~~-~~r~d~~~~~----~~~~~----~~~~~~~~~~~~~~~~r~ll~~~~~~~--~~~~~s~~~~~--~--~~~~f~~  272 (479)
                      +|++ ..+....+.+    .....    ..++.+++.++.+++|+++......+.  ... .+...+.  +  ...+++.
T Consensus       209 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~-~~~~~~~f~~~~~~lG~s~  287 (468)
T TIGR00788       209 KERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANL-PGASGSVFCATTQCLPGGP  287 (468)
T ss_pred             ccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhc-CCCCceeEEEEcccCCCCc
Confidence            4432 1111000000    00000    122334556666666766543222222  111 0110000  1  1235677


Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCch
Q 011720          273 RTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFA  352 (479)
Q Consensus       273 ~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (479)
                      ...++.....+++.+++....+++.+|  ++.|+...++...........    ......+..       ....  +...
T Consensus       288 ~~~G~~~~~~~v~~i~g~~~~~~~~~~--~~~r~~l~~~~~l~~~~~~~~----~~l~~~~~~-------~~gi--~~~~  352 (468)
T TIGR00788       288 SFSGMSKVVGNLGSLCGVGGYDRFLKT--FPYRLLFGVTTLLYTLSSLFD----LILVKRWNL-------AFGI--SDEV  352 (468)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHhCc----eeeeecccc-------ccCC--CCee
Confidence            778888888889999999999998876  677776555543321111000    000011110       0000  1111


Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          353 GPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       353 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      .+....++-++..+........++.+.. |++.+++.++++..++++|..++..++
T Consensus       353 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~-p~~~egt~~al~~s~~~lg~~v~~~~g  407 (468)
T TIGR00788       353 FVLGDSIIAEVLAQLKFMPFLVLLARLC-PSGCESSVFALLASILHLGSSVSGFLG  407 (468)
T ss_pred             eeeehhHHHHHHHHHHHccHHHHHHHhC-CCCceehHHHHHHHHHHHHHHHHHHHH
Confidence            1222233344444444444566788888 788899999999999999999988754

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=99.49  E-value=7e-14  Score=132.10  Aligned_cols=313  Identities=18%  Similarity=0.227  Sum_probs=200.1

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhcCCCCCCCChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHH
Q 011720           28 VQVSLIGLVCFCCPGMFNALSGMGGGGQLDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFL  107 (479)
Q Consensus        28 ~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~  107 (479)
                      .++.+++....+....|...++++.+.+  .+++..+.+..|.....++++.+.+..++|.||+|.++...|..|.+..+
T Consensus        29 knv~i~s~~fl~~f~a~~gl~nlq~~vn--~~lg~~sl~~~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl  106 (390)
T KOG3097|consen   29 KNVLILSIAFLLTFTAYLGLQNLQTSVN--YDLGTVSLGALYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANL  106 (390)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHh--cCcccchhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhc
Confidence            3567777443334455666666655433  25666778889999999999999999999999999999999998877765


Q ss_pred             hhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCC--ccch---------HhHHHHHHHHHHhhhhhhhHHHhhhh-
Q 011720          108 YYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPT--ATRK---------GTYISLFWSIFNMGGVVGGLIPFIMN-  175 (479)
Q Consensus       108 ~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~--~~~R---------G~~~g~~~~~~~~G~~iG~~i~~~i~-  175 (479)
                      .+    .+..++.+....|+|++..|.+.++|+++..+  .++|         .+..|.|+.+++.+..+|+.++..+. 
T Consensus       107 ~p----r~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli~~  182 (390)
T KOG3097|consen  107 EP----RYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLIMT  182 (390)
T ss_pred             ch----hHHhhccHHHhhccccccccccCcceecHHHHHHHHhhhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence            54    58889999999999999999999999998865  4556         57899999999999999987766432 


Q ss_pred             --hcc-----CC----c--------c---cccc---h------hHHHHHHHHHHHHHHHHhccCCcccccCCCCcccccc
Q 011720          176 --YHR-----TD----A--------E---SVND---K------TYIAFMCFMSAGAALSLAILPPSRVIRDDGTRCTNIK  224 (479)
Q Consensus       176 --~~~-----~~----~--------~---~~~~---~------~~~i~~~l~~l~~~l~~~~~~~~~~~r~d~~~~~~~~  224 (479)
                        .+.     ++    .        +   ....   +      .=.++....++..++..+++.+-+  |..+++   ..
T Consensus       183 ~~~~~~~~~sn~t~~~~CG~~f~~~g~~a~~nlt~p~~~~~lvls~i~L~c~via~~~~~~~~~~l~--r~~~~r---~~  257 (390)
T KOG3097|consen  183 LFLHGALSGSNLTFSVECGANFCGSGDKAEGNLTLPPSYVILVLSLIFLPCMVIAVLIMLFFLGALK--RYGEKR---LA  257 (390)
T ss_pred             HHhhccccCccceeeeecccccCCccccccCCccCCCCCceEEeeHHHHHHHHHHHHHHHHHHHHHh--hhhhhh---hh
Confidence              111     00    0        0   0000   0      012334444444444444432211  110000   00


Q ss_pred             cCCHHHHHHHHHHHhhchHHHHHHHHHHHhhhhhhccccccc----cccccchhhhHHHHHHHHHHHHHHHHhhhhcccc
Q 011720          225 YSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFYSYQFNNVN----GLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFS  300 (479)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~~s~~~~~~~----~~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~  300 (479)
                      +.+..+-+...++.++++|+.+++|+..++++...+.-..+.    .........+....+++++..+.+.+.|.+..+ 
T Consensus       258 ~~~~l~i~~l~~~~l~~~r~~llvP~tif~GleqaF~~~~fTk~~V~c~~Gv~~igf~m~cfgv~~Av~S~~~g~L~~~-  336 (390)
T KOG3097|consen  258 SVSGLNIFQLTFKHLRDIRLRLLVPLTIFSGLEQAFLCADFTKAYVACALGVSRIGFAMACFGVGDAVASSLFGLLGKW-  336 (390)
T ss_pred             cccccchHHHHHHHhcCcceeeeehhhhhhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence            111222345567788899999999999998875444312211    122345567788889999988888889999887 


Q ss_pred             ccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHH
Q 011720          301 FQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMV  372 (479)
Q Consensus       301 ~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  372 (479)
                       +||-+....+...........    +.    ++..  |   +     .+ +.......+||.+|+.|++++
T Consensus       337 -~gr~~~~v~gavv~l~li~~~----~~----w~~~--~---~-----~~-~i~y~~aalwgv~d~vw~t~i  388 (390)
T KOG3097|consen  337 -IGRPPLLVLGAVVHLLLITIL----FF----WAPN--P---Q-----DS-WIFYVAAALWGVGDAVWKTQI  388 (390)
T ss_pred             -cCCccHHHHHHHHHHHHHHHH----Hh----cccC--C---C-----Cc-eEEEeehhhcCccHHHHHhhc
Confidence             788887666654432111111    11    1111  1   1     11 112334456999999999864

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.47  E-value=4.2e-11  Score=124.25  Aligned_cols=323  Identities=15%  Similarity=0.114  Sum_probs=180.6

Q ss_pred             hhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHH-HHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhh
Q 011720           60 AANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCST-YVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGA  138 (479)
Q Consensus        60 ~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~-~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~  138 (479)
                      .....+++..+..++-.++.|.++|+-|+||-++..... ..+.++.+... ..++.+...+.-++.-++.+...+.-.+
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v-~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFV-SPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566777777888889999999999987766665543 33333333322 1233433344444444555555566678


Q ss_pred             hhhcCCCccch--------------------------HhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHH
Q 011720          139 IMTSYPTATRK--------------------------GTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAF  192 (479)
Q Consensus       139 ~i~e~~~~~~R--------------------------G~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~  192 (479)
                      ++-|+++++++                          ++..+.-+..-++|.++.-+++..+........+..+..-..+
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~  229 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF  229 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence            88899998888                          9999999998899998888777765433211100111111111


Q ss_pred             HH----HHHHHHHHHHhccCCcccccCCCCcccccccCCHHHHHHHHHHHh---h-chHHHHHHHH-HHHh-hhh--hhc
Q 011720          193 MC----FMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLF---R-NWKMLLLFPA-AWAS-NFF--YSY  260 (479)
Q Consensus       193 ~~----l~~l~~~l~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~---~-~~r~ll~~~~-~~~~-~~~--~s~  260 (479)
                      ..    ..+..... ++..|+++..+....     .+......+|+.++.+   + .|.+...... +++. ++.  .+.
T Consensus       230 ~~~a~ww~vfsiP~-~~~~~~~~~~~~~~~-----~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~  303 (477)
T PF11700_consen  230 LIVALWWLVFSIPL-FLWLPDRPGPRPLPS-----GSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISF  303 (477)
T ss_pred             HHHHHHHHHHHHHH-HHhCCCCCCCCCCCc-----chhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            11    11222222 333444332111000     0111222333333332   2 2333222211 2221 110  000


Q ss_pred             ccccccc--ccccchhhhHHHHHHHHHHHHHHHHhhhhccccccCcc--ceeeehhhhhHHHHHHHHHhHhhhhcccCCC
Q 011720          261 QFNNVNG--LMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLR--TRGLVGIGIVALFGTAIWGGGLASQLNYSHD  336 (479)
Q Consensus       261 ~~~~~~~--~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  336 (479)
                      . ..+..  .+++..+.....+...+.+++|+++.|++.||  +|.|  +.++.+.....++  .+++. +.+   .++ 
T Consensus       304 ~-~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r--~g~k~~~~l~~~l~~~~~i--~~~g~-~G~---~~~-  373 (477)
T PF11700_consen  304 A-GIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR--FGPKTKRTLLISLILWIII--PLYGL-FGF---WPS-  373 (477)
T ss_pred             H-HHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCchhHHHHHHHHHHHHH--HHHHH-HHh---hhc-
Confidence            0 11111  23454455566778899999999999999999  4555  5444443332111  12211 111   110 


Q ss_pred             CCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          337 DPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                          ..+.    ...+...++.+++|+..+..|+...++.+++. |+++.++.+|++....-..+.++..+.
T Consensus       374 ----~~g~----~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~Li-P~g~e~efFgly~i~gk~ss~lGPll~  436 (477)
T PF11700_consen  374 ----FFGL----KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLI-PPGREAEFFGLYAITGKASSWLGPLLF  436 (477)
T ss_pred             ----ccCc----ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhC-CCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence                0111    12344667778899999999999999999999 788889999999999998888887654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK09669 putative symporter YagG; Provisional

Probab=99.47  E-value=9.8e-12  Score=128.85  Aligned_cols=315  Identities=10%  Similarity=-0.038  Sum_probs=171.0

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhc----cchh-HHHhhhhHHHHHHHHHHHhh-hc--cCchhhHHHHHHHHhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNI----FGPR-VTLAAGCSTYVLYAGSFLYY-NH--HHDQTFAVVAGAVLGIG  128 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~----~Grk-~~l~ig~~~~~i~~~~~~~~-~~--~~~~~~li~~R~i~G~g  128 (479)
                      ++...+....+.-...++..++.|.++||    +||| +-++.+.+.+.+........ +.  ......+++..++.+.+
T Consensus        43 s~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~  122 (444)
T PRK09669         43 SAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLV  122 (444)
T ss_pred             CHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHH
Confidence            45566666777777788999999999999    7774 55556666555432222221 10  11234566677777777


Q ss_pred             hhhhhhhhhhhhhcCC-CccchHhHHHHHHHHHHhhhhhhhHHHhhhhh-ccCCcccccchh-HHHHHHHHHHHHHHHHh
Q 011720          129 AGLLWAGQGAIMTSYP-TATRKGTYISLFWSIFNMGGVVGGLIPFIMNY-HRTDAESVNDKT-YIAFMCFMSAGAALSLA  205 (479)
Q Consensus       129 ~g~~~~~~~~~i~e~~-~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~-~~~~~~~~~~~~-~~i~~~l~~l~~~l~~~  205 (479)
                      .........++..|+. ++++|++..++.....++|..+++.+...+.. ........+|+. ..+..++..+..++.++
T Consensus       123 ~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~  202 (444)
T PRK09669        123 YTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFF  202 (444)
T ss_pred             HHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhC
Confidence            7776666778888887 67899999999988888888888765443321 110001123432 22233333333333333


Q ss_pred             ccCCcccccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhhhh---hcccccc-cccccc-chhhhHHHH
Q 011720          206 ILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFY---SYQFNNV-NGLMFN-LRTRGLNNV  280 (479)
Q Consensus       206 ~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~~---s~~~~~~-~~~~f~-~~~~~l~~~  280 (479)
                      ..+|+... ++      +++.+..++++   +.+++|.++.+....+......   +.. ..+ ..+..+ ....+....
T Consensus       203 ~~~e~~~~-~~------~~~~~~~~~~~---~~~~n~~~~~l~~~~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~  271 (444)
T PRK09669        203 MTKERYTP-EV------DNSSSVWKDLK---LLLGNSQWRIMFIFNVVLLTAVVTRGGA-TLYYVNYVLLRPDLATLFLV  271 (444)
T ss_pred             CeEEecCC-CC------cCCCCHHHHHH---HHhCCchHHHHHHHHHHHHHHHHHHhhh-hheeeeeecCCHHHHHHHHH
Confidence            33332111 10      11223333333   3445665544433322221111   111 111 111122 222233444


Q ss_pred             HHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHH
Q 011720          281 FYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFS  360 (479)
Q Consensus       281 ~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (479)
                      ...+..+++.++.+++.||  +|||+....+..........+    + .   .+           .  .+.....+..++
T Consensus       272 ~~~i~~ii~~~~~~~l~~r--~gk~~~~~~~~~~~~~~~~~~----~-~---~~-----------~--~~~~~~~~~~~i  328 (444)
T PRK09669        272 TGMIAGLFGALLSERLLGK--FDRVRAFKWTIVAFVILSALI----F-F---IP-----------P--SNVWLIFALNIL  328 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHH----H-H---hC-----------c--chHHHHHHHHHH
Confidence            5567778888889999999  678886665543221111111    1 0   11           0  122334455567


Q ss_pred             HHhhHHHHHHHHHHHHHHhcCCc-------hhhhHHHHHHHHHHHHHHHHHhh
Q 011720          361 YGLLDAMFQSMVYWVIGALADDS-------ETLSRYTGFYKGVQSAGAAVAWQ  406 (479)
Q Consensus       361 ~g~~~~~~~~~~~~~~~~i~~~~-------~~r~~~~~~~~~~~~~g~~i~~~  406 (479)
                      .|++.+..++..++.+++.. |.       +..+..++.+.+.+.+|.+++..
T Consensus       329 ~g~~~~~~~~~~~am~ad~~-d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~  380 (444)
T PRK09669        329 FNFIQNLTTPLQWSMFSDVV-DYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGA  380 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhhh-hhhhhhcCcCcchHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888876 31       12245678887777777777644

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.46  E-value=1.8e-11  Score=127.97  Aligned_cols=324  Identities=10%  Similarity=-0.002  Sum_probs=168.9

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhh----ccch-hHHHhhhhHHHHHHHHHHHhhh-ccCc--hhhHHHHHHHHhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYN----IFGP-RVTLAAGCSTYVLYAGSFLYYN-HHHD--QTFAVVAGAVLGIG  128 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d----~~Gr-k~~l~ig~~~~~i~~~~~~~~~-~~~~--~~~li~~R~i~G~g  128 (479)
                      ++...+....+.-..-++..++.|.++|    |+|| |+-++++.+...+.....+... ..++  ...+++.-++.+++
T Consensus        40 s~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~  119 (473)
T PRK10429         40 SVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMT  119 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHH
Confidence            3555666666666777888999999999    6698 5566667666555322222210 0111  23455666777888


Q ss_pred             hhhhhhhhhhhhhcCC-CccchHhHHHHHHHHHHhhhhhhhHHHhhh-hhccCCcccccchhH-HHHHHHHHHHHHHHHh
Q 011720          129 AGLLWAGQGAIMTSYP-TATRKGTYISLFWSIFNMGGVVGGLIPFIM-NYHRTDAESVNDKTY-IAFMCFMSAGAALSLA  205 (479)
Q Consensus       129 ~g~~~~~~~~~i~e~~-~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i-~~~~~~~~~~~~~~~-~i~~~l~~l~~~l~~~  205 (479)
                      ..+..+.-.+...|++ ++++|.+..++-....++|..+++.+...+ ...........|... .+..++..+..++.++
T Consensus       120 ~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~  199 (473)
T PRK10429        120 YTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLR  199 (473)
T ss_pred             HHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHc
Confidence            8887777788889998 699999999986666676655554443322 111100001122211 2222222222333333


Q ss_pred             ccCCcccccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhhhhh---ccccccccccc-cchhhhHHHHH
Q 011720          206 ILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFYS---YQFNNVNGLMF-NLRTRGLNNVF  281 (479)
Q Consensus       206 ~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~~s---~~~~~~~~~~f-~~~~~~l~~~~  281 (479)
                      ..+|+...  ++.+.+.+++.+.++.++.   .+++|.++.+....+.......   .....+..+.. +....++....
T Consensus       200 ~~~e~~~~--~~~~~~~~~~~~~~~~~~~---~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~  274 (473)
T PRK10429        200 NVHEVYSS--DNQVSAEGSHLTLKDIVAL---IYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSY  274 (473)
T ss_pred             CceecCCc--cccccccccCCCHHHHHHH---HhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHH
Confidence            34443211  0000000112233333332   2355555444433332222111   01011111111 22233445555


Q ss_pred             HHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHH
Q 011720          282 YWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSY  361 (479)
Q Consensus       282 ~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (479)
                      .+++.+++.++.+++.||  +|||+..+.+..... +....+.  ..  . +.          ..  .......+..++.
T Consensus       275 ~~i~~ii~~~~~~~l~~r--~gkk~~~~~~~~~~~-~~~~~~~--~~--~-~~----------~~--~~~~~~~i~~~l~  334 (473)
T PRK10429        275 AGAANLVTLILFPRLVKS--LSRRILWAGASIFPV-LSCGVLL--LM--G-LA----------AP--HNALLIVIAGILL  334 (473)
T ss_pred             HHHHHHHHHHHHHHHHHH--cCcHHHHHHHHHHHH-HHHHHHH--HH--h-cc----------Cc--hhHHHHHHHHHHH
Confidence            668888999999999999  789887665543321 1111110  00  0 00          01  1223334455667


Q ss_pred             HhhHHHHHHHHHHHHHHhcCC-------chhhhHHHHHHHHHHHHHHHHHhh
Q 011720          362 GLLDAMFQSMVYWVIGALADD-------SETLSRYTGFYKGVQSAGAAVAWQ  406 (479)
Q Consensus       362 g~~~~~~~~~~~~~~~~i~~~-------~~~r~~~~~~~~~~~~~g~~i~~~  406 (479)
                      ++..+..++..+.++++.. |       .|..+..+|...+.+.++.+++..
T Consensus       335 g~~~~~~~~~~~am~ad~i-d~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~  385 (473)
T PRK10429        335 NIGTALFWVLQVIMVADTV-DYGEYKLGIRCESIAYSVQTMVVKGGSAFAAF  385 (473)
T ss_pred             HHHHHHHHHHHHHHHhhhh-hhhhHhcCccchhHHHHHHHHHHHHHHHHHHH
Confidence            7777778887888888875 2       222344788888888888777644

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.44  E-value=5.7e-11  Score=122.68  Aligned_cols=338  Identities=12%  Similarity=0.045  Sum_probs=178.0

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhh----ccchhHHHhhhhHHHHHHHHHHHhhhccCch-----------------
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYN----IFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQ-----------------  115 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d----~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~-----------------  115 (479)
                      ++........+.-....+.+++.|.++|    |+|||+.++++..+..+.....+ . .+++.                 
T Consensus        37 ~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll-~-~~~~~~~~~~~~~~~~~~~~~i  114 (477)
T TIGR01301        37 PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILI-G-FAADIGHLFGDNLDKKTKPRAI  114 (477)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHH-H-hCchhhhhccccccccchhHHH
Confidence            3455555556666667788899999999    59999998886544333211111 1 12222                 


Q ss_pred             hhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccch--HhHHHHHHHHHHhhhhhhhHHHhhhhhcc------CCc-ccc--
Q 011720          116 TFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRK--GTYISLFWSIFNMGGVVGGLIPFIMNYHR------TDA-ESV--  184 (479)
Q Consensus       116 ~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~R--G~~~g~~~~~~~~G~~iG~~i~~~i~~~~------~~~-~~~--  184 (479)
                      +..+++=.+..++.....+...++++|..|+++|  +++.+++....++|.++|+.++.......      .+. +..  
T Consensus       115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~  194 (477)
T TIGR01301       115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCA  194 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccc
Confidence            1223333344457777777778899999998865  68999999999999999999886542110      000 000  


Q ss_pred             c-chhHHHHHHHHHHHHHHHHhccCCcccccCCCC---cccccccCCHHHHHHHHHHHhhc--hHHHHHHHHHH--Hhhh
Q 011720          185 N-DKTYIAFMCFMSAGAALSLAILPPSRVIRDDGT---RCTNIKYSKVSTEAIEILKLFRN--WKMLLLFPAAW--ASNF  256 (479)
Q Consensus       185 ~-~~~~~i~~~l~~l~~~l~~~~~~~~~~~r~d~~---~~~~~~~~~~~~~~~~~~~~~~~--~r~ll~~~~~~--~~~~  256 (479)
                      + ...|.+-.++.++..++.++..+|++...+++.   +.+..++......+++.++.+++  |.++.+...++  +.+|
T Consensus       195 ~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~  274 (477)
T TIGR01301       195 NLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAW  274 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence            1 112333333344444444555555543111111   00001111112234555555432  23333333333  3344


Q ss_pred             hh-hccccccccc-ccc-------chh-----hhHHHHHHHHHHHHHHHHhhhhccccccCc-cceeeehhhhhHHHHHH
Q 011720          257 FY-SYQFNNVNGL-MFN-------LRT-----RGLNNVFYWGAQMLGSVGIGYVMDFSFQSL-RTRGLVGIGIVALFGTA  321 (479)
Q Consensus       257 ~~-s~~~~~~~~~-~f~-------~~~-----~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gR-r~~~~~g~~~~~~~~~~  321 (479)
                      +. ..+.+++... .|+       ..+     -.+....+.+...+.+++..++.+|  +|+ |+....+..... .++.
T Consensus       275 f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~--~g~~k~~~~~s~~~~~-~~l~  351 (477)
T TIGR01301       275 FPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG--WGAGKRLWGIVNIILA-ICLA  351 (477)
T ss_pred             HHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccchhHHHHHHHHHH-HHHH
Confidence            21 1122333321 111       011     1233445566666767777777766  665 444344432221 1111


Q ss_pred             HHHhHhhhhcccCCC----CCCCcccccCCCCC-chhHHHHHHHHHhhHHHHHHHHHHHHHHhcCC--chhhhHHHHHHH
Q 011720          322 IWGGGLASQLNYSHD----DPPKRLDFKTSGND-FAGPFVLYFSYGLLDAMFQSMVYWVIGALADD--SETLSRYTGFYK  394 (479)
Q Consensus       322 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~--~~~r~~~~~~~~  394 (479)
                      ..   . +.....++    +..+ ..+... .+ .....+++...|+..+..+..+|+++++.. +  .+..+..+|+.|
T Consensus       352 ~~---~-~i~~~~~~~~~~~~~~-~~~~~~-~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~-~~~~~~~G~~mgilN  424 (477)
T TIGR01301       352 AT---V-LVTYVAKNSRYYDGDG-ESLPPP-TGIKASALIVFAILGIPLAITYSIPFALASIRS-SNLGAGQGLSMGVLN  424 (477)
T ss_pred             HH---H-HHHhhhhccccccccc-cccCcc-hhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHc-cccCCCCcchhhHHH
Confidence            11   1 11111100    0000 011110 22 466788889999999999999999999887 3  345588889888


Q ss_pred             HHHHHHHHHHhh
Q 011720          395 GVQSAGAAVAWQ  406 (479)
Q Consensus       395 ~~~~~g~~i~~~  406 (479)
                      ....+.+.+...
T Consensus       425 ~~I~lpQii~sl  436 (477)
T TIGR01301       425 LAIVIPQIIVSL  436 (477)
T ss_pred             HHHHHHHHHHHH
Confidence            888877777654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.41  E-value=1.9e-10  Score=117.01  Aligned_cols=305  Identities=12%  Similarity=0.073  Sum_probs=157.5

Q ss_pred             HHHHHHHHhhhhh-hhhhhccchhHHHhhhhHHHHH-HHHHHHhhhccCc-hhhHHHHHHHHhhhhhhhhhhhhhhhhcC
Q 011720           67 ALYTTFSVFGILG-GGVYNIFGPRVTLAAGCSTYVL-YAGSFLYYNHHHD-QTFAVVAGAVLGIGAGLLWAGQGAIMTSY  143 (479)
Q Consensus        67 ~~~~~~aig~l~~-g~l~d~~Grk~~l~ig~~~~~i-~~~~~~~~~~~~~-~~~li~~R~i~G~g~g~~~~~~~~~i~e~  143 (479)
                      +.+..-.+.+++. +...||+|||+.++++..+... ............+ ...++..-++..+..+..-+....+..|.
T Consensus        46 l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~  125 (390)
T TIGR02718        46 LPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEH  125 (390)
T ss_pred             HHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344443444444 4567889999997666533211 1111111111222 22334444444455555555555566677


Q ss_pred             CCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCcccccCCCCcccc
Q 011720          144 PTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRVIRDDGTRCTN  222 (479)
Q Consensus       144 ~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~~r~d~~~~~~  222 (479)
                      .++++++...+.+.....+|.++|+.....+..      ..+|+ .|++..++..+..+..++++|+++ ++++.     
T Consensus       126 ~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~------~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~-~~~~~-----  193 (390)
T TIGR02718       126 FNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFG------KFGQRPAFLLVACVPLASLVCVLWLKDRAV-ASPEA-----  193 (390)
T ss_pred             CCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------HhCHHHHHHHHHHHHHHHHHHHHHcCCCCc-Ccccc-----
Confidence            777777888888888778888888866554432      24565 444444444444444444443322 11100     


Q ss_pred             cccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhh----hhhccccccc-cccccchhhhHHHHHHH-HHHHHHHHHhhhh
Q 011720          223 IKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNF----FYSYQFNNVN-GLMFNLRTRGLNNVFYW-GAQMLGSVGIGYV  296 (479)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~----~~s~~~~~~~-~~~f~~~~~~l~~~~~~-i~~~i~~~~~g~l  296 (479)
                        ++   ++.++..+.+++|+++......+..+.    .+++. +.+. +.+++.++.++.....+ +..+++.++.|++
T Consensus       194 --~~---~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l  267 (390)
T TIGR02718       194 --PL---ARRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLS-KLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWL  267 (390)
T ss_pred             --ch---hhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHh-hHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence              01   112233445566654433332222211    22322 3332 34566667777665555 4666778899999


Q ss_pred             ccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHH
Q 011720          297 MDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVI  376 (479)
Q Consensus       297 ~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  376 (479)
                      .||  +|+|+....+.....+. ...+   .....           .+..  +.........++.++..+...+..+...
T Consensus       268 ~~r--~g~~~~l~~~~~~~~~~-~~~~---~~~~~-----------~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~  328 (390)
T TIGR02718       268 VRR--AGLWRTFILGVGLAGSL-ALLW---FAQAA-----------FWLA--PGIAVAWSCSAFGSLITGITSVAIYTAF  328 (390)
T ss_pred             HHH--hhHHHHHHHHHHHHHHH-HHHH---HHHHH-----------cccC--CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999  67887665544322111 1111   10000           0111  1222223333344444555555555565


Q ss_pred             HHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          377 GALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       377 ~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      .+...+++.+++.+++.+...++|..++..+.
T Consensus       329 ~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~  360 (390)
T TIGR02718       329 MRFAGDGDQAGTDVTAVQSTRDLGELIASSIA  360 (390)
T ss_pred             HHHhCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            66663447889999999999999888887665

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.39  E-value=4e-12  Score=118.12  Aligned_cols=307  Identities=16%  Similarity=0.139  Sum_probs=163.0

Q ss_pred             HHHHHHHHHH----hhhhhhhhhhc-cchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhh
Q 011720           65 NTALYTTFSV----FGILGGGVYNI-FGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAI  139 (479)
Q Consensus        65 ~~~~~~~~ai----g~l~~g~l~d~-~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~  139 (479)
                      ..++|..+..    -|+++|++.|| +|-|+.-++-+++..+....+.+....+.+|+++++|++-|+|+-...++|..|
T Consensus        81 ftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~y  160 (459)
T KOG4686|consen   81 FTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKY  160 (459)
T ss_pred             eeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcce
Confidence            4456666554    46899999996 455554444333333322222222234568999999999999999999999999


Q ss_pred             hhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhh-ccCCcccccch---hHHHHHHHHHHHHHHHH---hccC---C
Q 011720          140 MTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNY-HRTDAESVNDK---TYIAFMCFMSAGAALSL---AILP---P  209 (479)
Q Consensus       140 i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~-~~~~~~~~~~~---~~~i~~~l~~l~~~l~~---~~~~---~  209 (479)
                      ..-+...|+.+..+|++.+...+|..+--++...+.. ...-..+...+   .+..+....+.-.++..   -+.+   |
T Consensus       161 av~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAe  240 (459)
T KOG4686|consen  161 AVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAE  240 (459)
T ss_pred             eEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            9999999999999999999999998665444333210 00000011111   23333332222222211   1111   1


Q ss_pred             cccccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHH--Hhhhhhhcc-cc-cccc--ccccchhhh-HHHHHH
Q 011720          210 SRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAW--ASNFFYSYQ-FN-NVNG--LMFNLRTRG-LNNVFY  282 (479)
Q Consensus       210 ~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~--~~~~~~s~~-~~-~~~~--~~f~~~~~~-l~~~~~  282 (479)
                      +.+.|+++..-+..+       +. ..+. ..|.++++..+..  +..++ .++ .. .+..  .+++....+ ..+.++
T Consensus       241 rilh~e~g~~Ge~pk-------Lt-dv~~-f~ppfw~~~iicv~yyva~f-PFi~lg~~fF~~rfGlS~~~a~~i~s~vy  310 (459)
T KOG4686|consen  241 RILHLEEGFLGEEPK-------LT-DVNT-FYPPFWVLVIICVLYYVAWF-PFITLGPMFFQKRFGLSAVSAGNILSTVY  310 (459)
T ss_pred             HHHhhhcCcccCCcc-------cc-cccc-cCccHHHHHHHHHHHHHHHH-HHhhhhHHHHHHhhCCChhhccchhhhhh
Confidence            122222221100000       00 0111 2344444443322  22221 111 11 1222  234443333 334455


Q ss_pred             HHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHH
Q 011720          283 WGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYG  362 (479)
Q Consensus       283 ~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  362 (479)
                      ++. .+.+++.|.++||  .||+..+..+.........+.    +.+    .        -|+        ...-..+.|
T Consensus       311 ~Is-av~spvfg~i~Dk--~G~n~~wv~~a~~~tl~~H~~----l~F----t--------~ls--------Py~~m~~lG  363 (459)
T KOG4686|consen  311 GIS-AVLSPVFGAISDK--YGFNLWWVASACILTLLGHSG----LFF----T--------FLS--------PYTSMTFLG  363 (459)
T ss_pred             hhh-hhhhhhHHHhHhh--hcceehhHHHHHHHHHHHhhh----HHh----h--------hcc--------HHHHHHHHh
Confidence            554 5566779999999  577765444332221111111    100    0        011        122333456


Q ss_pred             hhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          363 LLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       363 ~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      ...+......|..++.+. |.++.+++.+..+.+|++|.++...+..
T Consensus       364 LsysllAcslWP~va~~v-pE~qLGTaygf~qsIqNLgla~i~Iiag  409 (459)
T KOG4686|consen  364 LSYSLLACSLWPCVASLV-PEEQLGTAYGFIQSIQNLGLAFIPIIAG  409 (459)
T ss_pred             hhHHHHHHHHhhhhhhhC-CHHHhcchHHHHHHHHhhhhhHHhhhhh
Confidence            555555555667778887 6778899999999999999999887764

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.36  E-value=6.5e-11  Score=116.05  Aligned_cols=233  Identities=17%  Similarity=0.149  Sum_probs=149.4

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhh
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQG  137 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~  137 (479)
                      ....+......|.++.+.++.++.+.+|+|+|+.+++|..++.+....++-++...++.+++++-++.|.|.+..-++++
T Consensus        47 ~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaN  126 (422)
T COG0738          47 YFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAAN  126 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccc
Confidence            33555667788999999999999999999999999999999998433333222356788999999999999999999999


Q ss_pred             hhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhcc-----CCccccc--------ch-hHHHHHHHHHHHHHHH
Q 011720          138 AIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHR-----TDAESVN--------DK-TYIAFMCFMSAGAALS  203 (479)
Q Consensus       138 ~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~-----~~~~~~~--------~~-~~~i~~~l~~l~~~l~  203 (479)
                      .+++.+.++++..+.+++.+.++.+|.++||+++..+..+.     ++....+        ++ .|.....+..+..+..
T Consensus       127 p~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~  206 (422)
T COG0738         127 PYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLI  206 (422)
T ss_pred             hHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999877553310     0000011        11 2333333222222222


Q ss_pred             HhccCCcccccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHH-HHHHHhhhh---hhccccccc-c-ccccchhhhH
Q 011720          204 LAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLF-PAAWASNFF---YSYQFNNVN-G-LMFNLRTRGL  277 (479)
Q Consensus       204 ~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~-~~~~~~~~~---~s~~~~~~~-~-~~f~~~~~~l  277 (479)
                      ...+.|+.. ..+.++  .+ +++.     ...+.+++|+..+.. ..++|.+..   .++. .++. . .+.+..+.+.
T Consensus       207 ~~~k~p~~~-~~~~~~--~~-~~~~-----~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl-~~y~~~~~g~~~~~aa~  276 (422)
T COG0738         207 LLSKLPDLQ-VAAPSL--GA-SGSA-----GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFL-VSYLEELLGLNEQQAAY  276 (422)
T ss_pred             HhccCCcCC-cccccc--cc-cccc-----hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHH-HHHHHhcCCccHHHHHH
Confidence            233323211 111000  00 1110     122334455554433 334455431   2333 3332 1 3456666777


Q ss_pred             HHHHHHHHHHHHHHHhhhhcccc
Q 011720          278 NNVFYWGAQMLGSVGIGYVMDFS  300 (479)
Q Consensus       278 ~~~~~~i~~~i~~~~~g~l~Dr~  300 (479)
                      ....+.++.++|.+++..+..|.
T Consensus       277 ~~s~~~~~~~vGRFig~~lm~~~  299 (422)
T COG0738         277 YLSFFWVGFMVGRFIGSALMSRI  299 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            77788999999998888888774

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.33  E-value=5e-11  Score=122.97  Aligned_cols=319  Identities=13%  Similarity=0.063  Sum_probs=181.6

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhh----ccchhHHHh-hhhHHHHHHHHHHHhh---hccC--chhhHHHHHHHHh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYN----IFGPRVTLA-AGCSTYVLYAGSFLYY---NHHH--DQTFAVVAGAVLG  126 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d----~~Grk~~l~-ig~~~~~i~~~~~~~~---~~~~--~~~~li~~R~i~G  126 (479)
                      ++...+....+.-...++..++.|.++|    |+|||+..+ +|.+...+........   ..+.  ....+.+.-++..
T Consensus        35 ~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~  114 (428)
T PF13347_consen   35 SPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFD  114 (428)
T ss_pred             CHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHH
Confidence            3555555555556667778899999999    899766555 5666655533332221   0011  2234577777778


Q ss_pred             hhhhhhhhhhhhhhhcCCC-ccchHhHHHHHHHHHHhhhhhhhHHHhhhhhc-cCCcccccchh-HHHHHHHHHHHHHHH
Q 011720          127 IGAGLLWAGQGAIMTSYPT-ATRKGTYISLFWSIFNMGGVVGGLIPFIMNYH-RTDAESVNDKT-YIAFMCFMSAGAALS  203 (479)
Q Consensus       127 ~g~g~~~~~~~~~i~e~~~-~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~-~~~~~~~~~~~-~~i~~~l~~l~~~l~  203 (479)
                      ++.........++..|..+ +++|.+..+.-.....+|..+.+.+...+... ..+....+|.. ..+..++.++..++.
T Consensus       115 ~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~  194 (428)
T PF13347_consen  115 IAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLIT  194 (428)
T ss_pred             HhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhh
Confidence            8888888888889999986 67999999999888888886655555443221 11101012322 223333333333344


Q ss_pred             HhccCCcccccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhhhhhccccccc----cccc-cchhhhHH
Q 011720          204 LAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFYSYQFNNVN----GLMF-NLRTRGLN  278 (479)
Q Consensus       204 ~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~~s~~~~~~~----~~~f-~~~~~~l~  278 (479)
                      .+..+|++.+.+     +.+++.+.++.+++   .+++|.++.+....++.++..... ++..    .+.. +....+..
T Consensus       195 ~~~~ke~~~~~~-----~~~~~~~~~~~~~~---~~~nr~~~~l~~~~~~~~~~~~~~-~~~~~y~~~~vl~~~~~~~~~  265 (428)
T PF13347_consen  195 FFFVKERSVEVT-----EQEKKISLRDSLRS---LFRNRPFRILLLAFFLQWLAFALM-NTFLPYYFTYVLGNEGLISIF  265 (428)
T ss_pred             hheeeecccccc-----ccccccccccchhh---hcccchHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHhcCchhhHHH
Confidence            444444111110     01122233333332   334555544444333333211111 1111    1111 22334555


Q ss_pred             HHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHH
Q 011720          279 NVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLY  358 (479)
Q Consensus       279 ~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (479)
                      .....+..+++.++.+++.||  +|||+....+...........+     + .  +           .  .+.+......
T Consensus       266 ~~~~~~~~~v~~~~~~~l~~r--~gk~~~~~~~~~~~~~~~~~~~-----~-~--~-----------~--~~~~~~~i~~  322 (428)
T PF13347_consen  266 MLIFFVASIVGSPLWGRLSKR--FGKKKVYIIGLLLAALGFLLLF-----F-L--G-----------P--GSPWLVLILF  322 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--ccceeehhhhHHHHHHHHHHHH-----H-H--H-----------h--hhHHHHHHHH
Confidence            567788889999999999999  7899977777654322221111     1 0  0           0  1234567777


Q ss_pred             HHHHhhHHHHHHHHHHHHHHhcCCc------hhhhHHHHHHHHHHHHHHHHHhhh
Q 011720          359 FSYGLLDAMFQSMVYWVIGALADDS------ETLSRYTGFYKGVQSAGAAVAWQV  407 (479)
Q Consensus       359 ~~~g~~~~~~~~~~~~~~~~i~~~~------~~r~~~~~~~~~~~~~g~~i~~~~  407 (479)
                      ++.|++.+..+...+++++++.+..      +..+..+|++.+.+.++.+++..+
T Consensus       323 ~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i  377 (428)
T PF13347_consen  323 ILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAI  377 (428)
T ss_pred             HHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHH
Confidence            8888888888888888888877222      234777888888888887777553

>PTZ00207 hypothetical protein; Provisional

Probab=99.31  E-value=5.2e-10  Score=118.03  Aligned_cols=101  Identities=16%  Similarity=0.216  Sum_probs=80.2

Q ss_pred             HHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhh---ccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCcc
Q 011720           71 TFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYN---HHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTAT  147 (479)
Q Consensus        71 ~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~---~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~  147 (479)
                      .+++..+++|++.||+|||+++.++.+.+.+.........   ..++.+.+++.|++.|+|.+...++....+.+++ |+
T Consensus        73 ~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~F-p~  151 (591)
T PTZ00207         73 AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVF-PS  151 (591)
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hh
Confidence            3455677899999999999999999998887443332210   1257899999999999999998888888888987 58


Q ss_pred             chHhHHHHHHHHHHhhhhhhhHHHh
Q 011720          148 RKGTYISLFWSIFNMGGVVGGLIPF  172 (479)
Q Consensus       148 ~RG~~~g~~~~~~~~G~~iG~~i~~  172 (479)
                      +||+++|+......+|..+.+.+..
T Consensus       152 ~RG~a~Gi~~~~~gLGsaI~~~l~~  176 (591)
T PTZ00207        152 NRGAVVAIMKTFTGLGSAILGSIQL  176 (591)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999976444433

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.28  E-value=2.5e-09  Score=110.94  Aligned_cols=117  Identities=19%  Similarity=0.210  Sum_probs=86.1

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhcc-chhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIF-GPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~-Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      ++.......+.......++++++|+++||+ |||+++.+|.++..+...  +......+...++++-.+.++|.|...+.
T Consensus        43 s~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~l--ll~~~~~~~~~~~l~l~li~iG~G~~~~~  120 (493)
T PRK15462         43 DDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHV--VLGASEIHPSFLYLSLAIIVCGYGLFKSN  120 (493)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHH--HHHHhhcchhHHHHHHHHHHHhccccccc
Confidence            344555556666677788899999999999 999999999988776332  22111112234455555556677776677


Q ss_pred             hhhhhhcCCCcc--chHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          136 QGAIMTSYPTAT--RKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       136 ~~~~i~e~~~~~--~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      ..++++|..|++  +|++.+++++...++|..++|.+...+.
T Consensus       121 ~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~  162 (493)
T PRK15462        121 VSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ  162 (493)
T ss_pred             HHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH
Confidence            778899998865  6999999999999999999999987664

>PRK09848 glucuronide transporter; Provisional

Probab=99.25  E-value=1.2e-09  Score=113.39  Aligned_cols=309  Identities=11%  Similarity=0.034  Sum_probs=156.4

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhcc----chhHHH-hhhhHHHHHHHHHHHh-h-hccCc--hhhHHHHHHHHhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIF----GPRVTL-AAGCSTYVLYAGSFLY-Y-NHHHD--QTFAVVAGAVLGI  127 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~----Grk~~l-~ig~~~~~i~~~~~~~-~-~~~~~--~~~li~~R~i~G~  127 (479)
                      ++...+...+..-...++..++.|.++||.    |||+.. .++.+...+....... + ..+++  ....+..-++.++
T Consensus        42 ~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (448)
T PRK09848         42 GAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGL  121 (448)
T ss_pred             CHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHH
Confidence            355666667777777888999999999997    666644 5555544332112111 1 11111  2234555677788


Q ss_pred             hhhhhhhhhhhhhhcCC-CccchHhHHHHHHHHH-----HhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHH
Q 011720          128 GAGLLWAGQGAIMTSYP-TATRKGTYISLFWSIF-----NMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAA  201 (479)
Q Consensus       128 g~g~~~~~~~~~i~e~~-~~~~RG~~~g~~~~~~-----~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~  201 (479)
                      +.++..+...+...|.. ++++|.+..++-....     .++..+++++.....  .  .....+..+.  .++.+++.+
T Consensus       122 ~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g--~--~~~~~~~~~~--~~~~v~~~~  195 (448)
T PRK09848        122 CYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSP--E--EMVSVYHFWT--IVLAIAGMV  195 (448)
T ss_pred             HHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--C--chhhhHHHHH--HHHHHHHHH
Confidence            88887766666666655 4678998877654432     344455555543210  0  0001121121  122222222


Q ss_pred             H---HHhccCCcccccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhhh---hhcccccccccccc--ch
Q 011720          202 L---SLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFF---YSYQFNNVNGLMFN--LR  273 (479)
Q Consensus       202 l---~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~---~s~~~~~~~~~~f~--~~  273 (479)
                      +   .....||+. .++       .++++..+.++   +.+++|+++......+.....   .....+.+....++  ..
T Consensus       196 ~~~~~~~~~~e~~-~~~-------~~~~~~~~~~~---~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  264 (448)
T PRK09848        196 LYFICFKSTRENV-VRI-------VAQPSLKISLQ---TLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGL  264 (448)
T ss_pred             HHHHHHcCcEecc-CCC-------ccCCCHHHHHH---HHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHH
Confidence            1   122222221 111       01123333333   344666665543332222211   11111222222222  11


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchh
Q 011720          274 TRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAG  353 (479)
Q Consensus       274 ~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (479)
                      ..++......++.+++.++.+++.||  +|+|+....+..... +....    +.+   .+        +     .+.+.
T Consensus       265 ~~~~~~~~~~~~~~~~~~l~~~l~~r--~g~~~~~~~g~~~~~-i~~~~----~~~---~~--------~-----~~~~~  321 (448)
T PRK09848        265 FTVLVLVQNLVGTVASAPLVPGMVAR--IGKKNTFLIGALLGT-CGYLL----FFW---VS--------V-----WSLPV  321 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHHH-HHHHH----HHH---cC--------c-----hhHHH
Confidence            22233333456678888899999999  678887666654321 11111    111   01        1     12233


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHhcCCc-------hhhhHHHHHHHHHHHHHHHHHhh
Q 011720          354 PFVLYFSYGLLDAMFQSMVYWVIGALADDS-------ETLSRYTGFYKGVQSAGAAVAWQ  406 (479)
Q Consensus       354 ~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~-------~~r~~~~~~~~~~~~~g~~i~~~  406 (479)
                      .....++.+++.+..++..+....+.. |.       |.++...+++++.+.+|.+++..
T Consensus       322 ~~~~~~l~g~G~~~~~~~~~al~~~~~-~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~  380 (448)
T PRK09848        322 ALVALAIASIGQGVTMTVMWALEADTV-EYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGS  380 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHhhCccchhHHHHHHHHHHHHHHHHHHH
Confidence            344455677777777777777777766 32       23588889999999888888644

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.24  E-value=2.5e-09  Score=105.70  Aligned_cols=314  Identities=12%  Similarity=0.066  Sum_probs=176.9

Q ss_pred             hhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhh-hhHHHHHHHHHHHhhhcc-CchhhHHHHHHHHhhhhhhhhhhhh
Q 011720           60 AANNANTALYTTFSVFGILGGGVYNIFGPRVTLAA-GCSTYVLYAGSFLYYNHH-HDQTFAVVAGAVLGIGAGLLWAGQG  137 (479)
Q Consensus        60 ~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~i-g~~~~~i~~~~~~~~~~~-~~~~~li~~R~i~G~g~g~~~~~~~  137 (479)
                      .-..+.++.-+..++-+++-|.++|+.|+||-.+- ...+-+++....... .. .+.+..++.-++..++.....+...
T Consensus        59 ~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i-~~~s~~~~~l~~~il~~i~~~~s~Vfyd  137 (438)
T COG2270          59 YWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFI-PPGSYLLLLLLFLILASIGFEFSNVFYD  137 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHHhcchhheehh
Confidence            44455566666667778899999999997655443 333333332232222 12 2345567778888888888888888


Q ss_pred             hhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCc-------------ccccchhH-HHHHHHHHHHHHHH
Q 011720          138 AIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDA-------------ESVNDKTY-IAFMCFMSAGAALS  203 (479)
Q Consensus       138 ~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~-------------~~~~~~~~-~i~~~l~~l~~~l~  203 (479)
                      +.+.+..++++.||..++-|..-.+|+++--++........+..             +......+ +......+....+.
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~  217 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI  217 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence            99999999999999999988888888877666654332111000             00001111 11111111222221


Q ss_pred             HhccCCcccccCCCCcccccccCCHHHHH---HHHHHHhhchH-HHH-HHHHHHHh-hhhhhccccccc---cccccchh
Q 011720          204 LAILPPSRVIRDDGTRCTNIKYSKVSTEA---IEILKLFRNWK-MLL-LFPAAWAS-NFFYSYQFNNVN---GLMFNLRT  274 (479)
Q Consensus       204 ~~~~~~~~~~r~d~~~~~~~~~~~~~~~~---~~~~~~~~~~r-~ll-~~~~~~~~-~~~~s~~~~~~~---~~~f~~~~  274 (479)
                      +...++.+ .+ +      ..++.....+   ++.+|..++++ +.+ +.--++++ +..-...+....   .++++..+
T Consensus       218 ~~v~~~~~-~~-~------~~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~  289 (438)
T COG2270         218 LNVHDAEK-IS-S------PPPTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTE  289 (438)
T ss_pred             hccccccc-cc-c------cchHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHH
Confidence            22111111 00 0      0111222223   33333333332 211 11112221 220000001111   12334445


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhH
Q 011720          275 RGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGP  354 (479)
Q Consensus       275 ~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (479)
                      ..+..+...+.+++|+++.|++.||  +|-|+....+++...+.+  ++    ...   .+         ..     ...
T Consensus       290 lll~g~~~~vvA~lg~ii~g~Ld~r--fg~k~vl~~~lvi~~~~~--~~----~~~---~~---------~~-----~~f  344 (438)
T COG2270         290 LLLIGIALSVVAALGAIIAGFLDER--FGSKPVLMIGLVILSIAA--LY----LIF---LE---------GE-----LDF  344 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--hCCceeehHHHHHHHHHH--HH----HHH---cc---------cc-----HHH
Confidence            5667778899999999999999888  667777777755432211  21    111   10         11     123


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          355 FVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       355 ~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      ..+.++.|...+..|....++.+++. |+++-++.+|+|+.....++.++.+.-
T Consensus       345 ~i~gll~g~s~G~~qA~SRSy~~~lv-p~~k~~~fFglyaltgra~S~~gp~lv  397 (438)
T COG2270         345 WILGLLVGTSLGGAQASSRSYLARLV-PKGKEGRFFGLYALTGRAASFLGPFLV  397 (438)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhC-CCccccceeehhhhhhhHHHHHHHHHH
Confidence            44557899999999999999999999 788889999999999988888886644

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.23  E-value=1.8e-10  Score=114.31  Aligned_cols=275  Identities=16%  Similarity=0.129  Sum_probs=159.0

Q ss_pred             ccccchhHHHHHHHHHHhhhhhhhhhhhcCCCCCC---CChhhhhhHHHHHHH-HHHHhhhhhhhhhhccchhHHHhhhh
Q 011720           21 FRYNSPLVQVSLIGLVCFCCPGMFNALSGMGGGGQ---LDPTAANNANTALYT-TFSVFGILGGGVYNIFGPRVTLAAGC   96 (479)
Q Consensus        21 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~-~~aig~l~~g~l~d~~Grk~~l~ig~   96 (479)
                      +-|+|+|..++..+++.+.....+.....+++..+   .+.+. ..-.+..|. .....++.+-++.|++|-|.++.+++
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Ygs~~~-~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt  116 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYGSSSA-ADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT  116 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhcchHH-HHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence            58999999888888877666443322211111100   01111 122344443 34445678899999999999999999


Q ss_pred             HHHHHHHHHHHhhhcc---Cchh--hHHHHHHHHhhhhhhhhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHH
Q 011720           97 STYVLYAGSFLYYNHH---HDQT--FAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIP  171 (479)
Q Consensus        97 ~~~~i~~~~~~~~~~~---~~~~--~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~  171 (479)
                      ..-++....=.....-   +..+  ....+..+.+.+.-.....-+.+..-|.+|++|..+..+-.+...+|..+|.++.
T Consensus       117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llp  196 (480)
T KOG2563|consen  117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLP  196 (480)
T ss_pred             HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcc
Confidence            9888732221111111   2344  6678888888888777665566777889999999999998888889999998887


Q ss_pred             hhhhhccCCcccccchhHHHHH---HHHHHHHHHHHhccCCcccccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHH
Q 011720          172 FIMNYHRTDAESVNDKTYIAFM---CFMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLF  248 (479)
Q Consensus       172 ~~i~~~~~~~~~~~~~~~~i~~---~l~~l~~~l~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~  248 (479)
                      -.+..+.++..+.+|.....+.   .+..+.+++..+.+++++... ++.....+.+.++.   +...+.++++++.++.
T Consensus       197 pilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tP-ps~s~~~~~~~~f~---~si~~~~~n~~F~il~  272 (480)
T KOG2563|consen  197 PILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTP-PSASQAALQDASFP---KSIKSCFKNRQFIILA  272 (480)
T ss_pred             ceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CchhHhhhhcCcHH---HHHHHHHcCccHHHHH
Confidence            7554333223345564432222   222232333333333322110 10000000112233   4455677888776655


Q ss_pred             HHH-HHhhhhhhcc--cc-ccccccccchhhhHHHHHHHHHHHHHHHHhhhhcccc
Q 011720          249 PAA-WASNFFYSYQ--FN-NVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFS  300 (479)
Q Consensus       249 ~~~-~~~~~~~s~~--~~-~~~~~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~  300 (479)
                      ... +..+.+++..  ++ .....+++-...|......-++.++++.+.|.+.||.
T Consensus       273 ~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt  328 (480)
T KOG2563|consen  273 ICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKT  328 (480)
T ss_pred             HHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhh
Confidence            432 2233333322  12 1122334334667777778888899999999999994

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.22  E-value=3.9e-09  Score=107.30  Aligned_cols=319  Identities=11%  Similarity=0.041  Sum_probs=177.3

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhc----cch-hHHHhhhhHHHHHHHHHHHhhh-cc--CchhhHHHHHHHHhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNI----FGP-RVTLAAGCSTYVLYAGSFLYYN-HH--HDQTFAVVAGAVLGIG  128 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~----~Gr-k~~l~ig~~~~~i~~~~~~~~~-~~--~~~~~li~~R~i~G~g  128 (479)
                      ++...+....+.=..-++.-++.|.++||    +|| |+=++.+.+.+.+......... .+  .+....++--.+.|++
T Consensus        46 s~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~  125 (467)
T COG2211          46 SAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLG  125 (467)
T ss_pred             cHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHH
Confidence            35555555555556678889999999996    676 5566777777777444443321 11  2344567778888899


Q ss_pred             hhhhhhhhhhhhhcCC-CccchHhHHHHHHHHHHhhhhhhhHHHhh-hhhccCCcccccchh-HHHHHHHHHHHHHHHHh
Q 011720          129 AGLLWAGQGAIMTSYP-TATRKGTYISLFWSIFNMGGVVGGLIPFI-MNYHRTDAESVNDKT-YIAFMCFMSAGAALSLA  205 (479)
Q Consensus       129 ~g~~~~~~~~~i~e~~-~~~~RG~~~g~~~~~~~~G~~iG~~i~~~-i~~~~~~~~~~~~~~-~~i~~~l~~l~~~l~~~  205 (479)
                      .......-.++..|+. +|+||.+..++-..+.++|..+-..+... +.....++...+|.. -+++.++.++..+++++
T Consensus       126 YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~  205 (467)
T COG2211         126 YTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFF  205 (467)
T ss_pred             HHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            8887777777888776 58999999999988888886655544332 222211111223321 12223333333333444


Q ss_pred             ccCCcccccCCCCcccccccCCHHHHHHHHHH-HhhchHHHHHHHHHHHhhhhhhc---cccccccccc--cchhhhHHH
Q 011720          206 ILPPSRVIRDDGTRCTNIKYSKVSTEAIEILK-LFRNWKMLLLFPAAWASNFFYSY---QFNNVNGLMF--NLRTRGLNN  279 (479)
Q Consensus       206 ~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~-~~~~~r~ll~~~~~~~~~~~~s~---~~~~~~~~~f--~~~~~~l~~  279 (479)
                      -.+|+..++..+       +...+.++++.+. .+++|.+++.....++.......   .+..+..+..  +.....+..
T Consensus       206 ~v~ER~~~~~~~-------~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~  278 (467)
T COG2211         206 NVKERVVETQPT-------KTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLL  278 (467)
T ss_pred             HhhcccCccccC-------cccccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHH
Confidence            344443211100       0112222333333 33444433333222222111111   0011111111  222334555


Q ss_pred             HHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHH
Q 011720          280 VFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYF  359 (479)
Q Consensus       280 ~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (479)
                      .....+.+++.++..++.+|  +|||+...++.+..++...+.+.      .  +           .  .+.+..++..+
T Consensus       279 ~~~~~~~l~~~~~~p~L~~~--~gkk~~~~~~~~~~~i~~~~~~f------~--~-----------~--~~~~l~~~~~~  335 (467)
T COG2211         279 LASGAGLLIGLILWPRLVKK--FGKKKLFLIGLLLLAVGYLLLYF------T--P-----------A--GSVVLIVVALI  335 (467)
T ss_pred             HHHHHHHHHHHHhHHHHHHH--hchHHHHHHHHHHHHHHHHHHHh------h--c-----------C--cchHHHHHHHH
Confidence            66777778878889999988  78999888775443322222221      0  0           1  23445555667


Q ss_pred             HHHhhHHHHHHHHHHHHHHhcCCc-------hhhhHHHHHHHHHHHHHHHHHhh
Q 011720          360 SYGLLDAMFQSMVYWVIGALADDS-------ETLSRYTGFYKGVQSAGAAVAWQ  406 (479)
Q Consensus       360 ~~g~~~~~~~~~~~~~~~~i~~~~-------~~r~~~~~~~~~~~~~g~~i~~~  406 (479)
                      ..+++.+..++.+|+.++++. |.       |.-+..+|.+.+++-+|.+++-+
T Consensus       336 i~~~g~~~~~~l~wam~~d~v-Dyge~~TG~R~eGi~~s~~tF~~K~g~ala~~  388 (467)
T COG2211         336 IAGVGTGIANPLPWAMVADTV-DYGEWKTGVRREGIVYSGMTFFRKLGLALAGF  388 (467)
T ss_pred             HHHHHhhccccccHHHhcchh-hHHHHHhCCCchhhHHHHHHHHHHHHHHHHHH
Confidence            788888888888898888765 22       22356677788888777777654

>PRK11462 putative transporter; Provisional

Probab=99.18  E-value=1.7e-08  Score=105.07  Aligned_cols=315  Identities=9%  Similarity=-0.015  Sum_probs=157.9

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhc----cchhHHHh-hhhHHHHHHHHHHHhh-hccCc--hhhHHHHHHHHhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNI----FGPRVTLA-AGCSTYVLYAGSFLYY-NHHHD--QTFAVVAGAVLGIG  128 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~----~Grk~~l~-ig~~~~~i~~~~~~~~-~~~~~--~~~li~~R~i~G~g  128 (479)
                      ++...+....+.-..-++..++.|.++||    +|||+..+ +|.+.+.+........ ..+++  ...+++.-++..++
T Consensus        43 ~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~  122 (460)
T PRK11462         43 PAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLL  122 (460)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHH
Confidence            45555555555556678889999999996    68865544 5656655533222221 11111  23456666677888


Q ss_pred             hhhhhhhhhhhhhcCCC-ccchHhHHHHHHHHHHhhhhhhhHHHhhhh-hccCCcccccchh-HHHHHHHHHHHHHHHHh
Q 011720          129 AGLLWAGQGAIMTSYPT-ATRKGTYISLFWSIFNMGGVVGGLIPFIMN-YHRTDAESVNDKT-YIAFMCFMSAGAALSLA  205 (479)
Q Consensus       129 ~g~~~~~~~~~i~e~~~-~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~-~~~~~~~~~~~~~-~~i~~~l~~l~~~l~~~  205 (479)
                      ..+....-.++..|+++ +++|.+..++.....++|..+++.+...+. ...+++...+|.. ..++.++.++...+.++
T Consensus       123 ~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~  202 (460)
T PRK11462        123 YTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFF  202 (460)
T ss_pred             HHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            88877777788888876 899999999999888888877776644332 1111001122322 12222222232223233


Q ss_pred             ccCCcccccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhh---hhhcccccc-cccccc-chhhhHHHH
Q 011720          206 ILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNF---FYSYQFNNV-NGLMFN-LRTRGLNNV  280 (479)
Q Consensus       206 ~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~---~~s~~~~~~-~~~~f~-~~~~~l~~~  280 (479)
                      ..+|+...+        .++.+.++.++.   .+++|.++.+....+....   ..+.. ..+ ..+.++ ....+....
T Consensus       203 ~~kE~~~~~--------~~~~~~~~~l~~---~~~Nk~~~~l~~~~~~~~~~~~~~~~~-~~y~~~y~~g~~~~~~~~l~  270 (460)
T PRK11462        203 TTKERVEAP--------PTTTSMREDLRD---IWQNDQWRIVGLLTIFNILAVCVRGGA-MMYYVTWILGTPEVFVAFLT  270 (460)
T ss_pred             cceeccCCC--------ccCCCHHHHHHH---HhCChHHHHHHHHHHHHHHHHHHHHhH-hhhhhhhhcCChHHHHHHHH
Confidence            333321110        012233433332   3344444333222211111   00000 111 111122 222334455


Q ss_pred             HHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHH
Q 011720          281 FYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFS  360 (479)
Q Consensus       281 ~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (479)
                      .+++..+++.++.+++.||  ++||+....+..........+    + +   .+        +     .+....+...++
T Consensus       271 ~~~i~~iig~~l~~~l~~r--~gkk~~~~~~~~~~~~~~~~~----~-~---~~--------~-----~~~~~~~~~~~l  327 (460)
T PRK11462        271 TYCVGNLIGSALAKPLTDW--KCKVTIFWWTNALLAVISLAM----F-F---VP--------M-----QASITMFVFIFV  327 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHH----H-H---hc--------h-----hHHHHHHHHHHH
Confidence            6788889999999999999  667765443322211111111    1 1   11        0     111112233344


Q ss_pred             HHhhHHHHHHHHHHHHHHhcCC----chhhh--HHHHHHHHHHHHHHHHHhh
Q 011720          361 YGLLDAMFQSMVYWVIGALADD----SETLS--RYTGFYKGVQSAGAAVAWQ  406 (479)
Q Consensus       361 ~g~~~~~~~~~~~~~~~~i~~~----~~~r~--~~~~~~~~~~~~g~~i~~~  406 (479)
                      .|+..+..++..+..+++..+.    ..+|.  ..++...+.+.+|.+++..
T Consensus       328 ~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~  379 (460)
T PRK11462        328 IGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGA  379 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            5666666666667676665511    12333  3345555666666655543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.16  E-value=3.9e-08  Score=97.53  Aligned_cols=317  Identities=11%  Similarity=0.068  Sum_probs=174.5

Q ss_pred             hhhhHHHHHHHHHHHhhhhhhhhhhccc-----hhHHHhhhhHHHHHHHHH-----HHhhhc-----cCc--hh--hHHH
Q 011720           60 AANNANTALYTTFSVFGILGGGVYNIFG-----PRVTLAAGCSTYVLYAGS-----FLYYNH-----HHD--QT--FAVV  120 (479)
Q Consensus        60 ~~~~~~~~~~~~~aig~l~~g~l~d~~G-----rk~~l~ig~~~~~i~~~~-----~~~~~~-----~~~--~~--~li~  120 (479)
                      +.....++.|. .+......|..+|+.+     ||..++++..........     .++...     .++  .+  ....
T Consensus        16 lv~~lval~~~-~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l   94 (403)
T PF03209_consen   16 LVALLVALHYL-VAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAAL   94 (403)
T ss_pred             HHHHHHHHHHH-HHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHH
Confidence            34444444444 4556788999999999     888877765433221111     111111     002  22  2344


Q ss_pred             HHHHHhhhhhhhhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCccccc-chhHHHHHHHHHHH
Q 011720          121 AGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVN-DKTYIAFMCFMSAG  199 (479)
Q Consensus       121 ~R~i~G~g~g~~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~-~~~~~i~~~l~~l~  199 (479)
                      .=++.|+|.+...++--++++|.+|||+|++..++.|.+..+|.+++..+...+...      ++ .+...+.-....+.
T Consensus        95 ~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~------~s~~rL~~v~~~~a~i~  168 (403)
T PF03209_consen   95 AFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDP------FSPERLIQVIQGVALIA  168 (403)
T ss_pred             HHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccc------cCHHHHHHHHHHHHHHH
Confidence            556678888888888888999999999999999999999999999998887655321      22 23332222222222


Q ss_pred             H---HHHHhccCCcccccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhhhhhccccccccc--cccchh
Q 011720          200 A---ALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFYSYQFNNVNGL--MFNLRT  274 (479)
Q Consensus       200 ~---~l~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~~s~~~~~~~~~--~f~~~~  274 (479)
                      .   +++++-. |++..+..  ....+++.++++.+++.++....+|++....+........-.++..|-..  +.++.+
T Consensus       169 ~~l~~ia~wg~-E~r~~~~~--~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~e  245 (403)
T PF03209_consen  169 LLLNLIALWGQ-EPRRSRRA--AAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGE  245 (403)
T ss_pred             HHHHHHHHHhc-ccCCcccc--cCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHH
Confidence            2   2233322 32221111  11112345666666666544334454443322222111111111222222  234555


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhH
Q 011720          275 RGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGP  354 (479)
Q Consensus       275 ~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (479)
                      ....+...+.+.++|-...|++..|. .++++...+|..... .++...    +....            .+   +.+..
T Consensus       246 TT~Lta~~~~G~L~G~~~~g~~l~~~-~~~~~~a~~G~~~~~-~~f~li----i~a~~------------~~---~~~~~  304 (403)
T PF03209_consen  246 TTRLTAFWGGGTLLGMLLAGFLLSRR-LGKKRTAALGCLLGA-LAFALI----ILAGP------------LG---SPWLF  304 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH-HHHHHH----HHHHh------------cc---cchHH
Confidence            66677788999999999999988752 566655555543322 222221    11110            11   11122


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          355 FVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       355 ~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      ...-+++|+..+.+..-.-..+=++. ++++.+...|.+-..|+++..++.+..
T Consensus       305 ~~~~~l~G~g~G~f~vgals~mM~lt-~~~~aG~~mG~WGaaQA~A~Glg~~~G  357 (403)
T PF03209_consen  305 RPGVFLLGLGNGLFTVGALSLMMDLT-SAGRAGLFMGAWGAAQAIARGLGTFLG  357 (403)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhCC-CCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            23334566666665554444444566 567778889999999988888877665

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.12  E-value=4.4e-09  Score=103.63  Aligned_cols=254  Identities=15%  Similarity=0.113  Sum_probs=142.7

Q ss_pred             CchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccC-Cc---------c
Q 011720          113 HDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRT-DA---------E  182 (479)
Q Consensus       113 ~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~-~~---------~  182 (479)
                      .+++.++++-++.|.|.+...++.+.+++++.+++++.+.+++.+.++.+|.++||++...+..... +.         .
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~   87 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAE   87 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHH
Confidence            5688999999999999999999999999999999999999999999999999999999886543210 00         0


Q ss_pred             cccchh-HHHHHHHHHHHHHHHHhccCCcccccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHH-HHHHHhhhh---
Q 011720          183 SVNDKT-YIAFMCFMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLF-PAAWASNFF---  257 (479)
Q Consensus       183 ~~~~~~-~~i~~~l~~l~~~l~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~-~~~~~~~~~---  257 (479)
                      ..+|+. |++...+..+..++..+...|+.. ++|+++..  +++.  .+.+   +.+++|++++.. ..+++.+..   
T Consensus        88 ~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~-~~~~~~~~--~~~~--~~~~---~~~~~~~~~l~~~~~f~yvg~e~~~  159 (310)
T TIGR01272        88 AAKVHTPYLLLAGALAVLAIIFAFLPLPELQ-EADVARVS--SGDT--TQKT---SAFQFTHLVLGALGIFVYVGAEVSA  159 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC-cccccccc--cccc--cchh---hHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            123433 333333333322222333223211 11111100  0110  0111   223445544433 233333221   


Q ss_pred             hhcccccccc----ccccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhccc
Q 011720          258 YSYQFNNVNG----LMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNY  333 (479)
Q Consensus       258 ~s~~~~~~~~----~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~  333 (479)
                      .++. ..|+.    .+++..+.++....+..+.++|+++.+++.||  +|+|+....+..... +...+    . . .  
T Consensus       160 ~~w~-~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r--~g~~~~l~~~~~l~~-~~~~l----~-~-~--  227 (310)
T TIGR01272       160 GSFL-VNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM--ISQGRYLAFNAFLAV-LLSIG----A-A-L--  227 (310)
T ss_pred             HHHH-HHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHH-HHHHH----H-H-H--
Confidence            1222 33332    23455566777788899999999999999999  677765554433221 11111    1 0 0  


Q ss_pred             CCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHH
Q 011720          334 SHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVA  404 (479)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~  404 (479)
                      .              .+.. .....++.|++.+...|.......+..  +++.+++.++. ....+|.++.
T Consensus       228 ~--------------~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~--~~~~~~asai~-~~~~~Gg~i~  280 (310)
T TIGR01272       228 T--------------HGYV-AMWFVLALGLFNSIMFPTIFSLALNAL--GRHTSQGSGIL-CLAIVGGAIV  280 (310)
T ss_pred             c--------------CCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhhhhHHHH-HHHHhcchHH
Confidence            0              0111 122344677887777787776666666  23344555553 2333444444

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.11  E-value=1.4e-09  Score=92.64  Aligned_cols=130  Identities=17%  Similarity=0.266  Sum_probs=97.2

Q ss_pred             HHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccch
Q 011720           70 TTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRK  149 (479)
Q Consensus        70 ~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~R  149 (479)
                      .+..++.++.+++.||+|||+.+.++.....+....  .. ..++.+.+++.+++.|++.+...+....++.|..|+++|
T Consensus         9 ~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   85 (141)
T TIGR00880         9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAM--FA-LSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEER   85 (141)
T ss_pred             hHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHH--HH-HhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhh
Confidence            345567889999999999999999888776653222  21 246788899999999999999888888999999999999


Q ss_pred             HhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccC
Q 011720          150 GTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILP  208 (479)
Q Consensus       150 G~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~  208 (479)
                      ++..++......+|..+|+.+...+..      ..+|+ .+.+...+..+..+...++.|
T Consensus        86 ~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (141)
T TIGR00880        86 GVALGLMSAGIALGPLLGPPLGGVLAQ------FLGWRAPFLFLAILALAAFILLAFLLP  139 (141)
T ss_pred             hHHHHHHHHhHHHHHHHhHHhHHHHhc------ccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence            999999999999999999988876642      12342 344444444444444444443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.11  E-value=4.8e-08  Score=99.46  Aligned_cols=314  Identities=15%  Similarity=0.057  Sum_probs=159.2

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccch-hHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGP-RVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWA  134 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Gr-k~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~  134 (479)
                      .+....+...++......++++++|.++||.++ |+.+.+..++-.+   ..+.....++.+.+++.-++..+......+
T Consensus        34 ~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~---~~~~~~~~~~f~~~~~~~~l~~~~~~p~~p  110 (400)
T PF03825_consen   34 FSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSAL---ALLLLAFSSSFWWLFVIMLLFSFFFSPTMP  110 (400)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHH---HHHHHHHhccHHHHHHHHHHHHHHHccHHH
Confidence            345566666777777778888999999999874 6666665554333   111111245677777767676666665555


Q ss_pred             hhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCccccc
Q 011720          135 GQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRVIR  214 (479)
Q Consensus       135 ~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~~r  214 (479)
                      -..++..+...  ++++-.|-.-..-++|-+++++..........+.+...+ .+.+...+..+..... +.+|..+.+|
T Consensus       111 l~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ll~~~~-l~lp~~~~~~  186 (400)
T PF03825_consen  111 LSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSL-IFYIAAILSLLLAGFA-LFLPKTPPKR  186 (400)
T ss_pred             HHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccH-HHHHHHHHHHHHHHHH-HhCCCCcccc
Confidence            55555555543  333333433333455666654431111110000011112 2222222222222222 2334332112


Q ss_pred             CCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhh----hhhcccccccc-cc-ccchhhhHHHHHHHHHHHH
Q 011720          215 DDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNF----FYSYQFNNVNG-LM-FNLRTRGLNNVFYWGAQML  288 (479)
Q Consensus       215 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~----~~s~~~~~~~~-~~-f~~~~~~l~~~~~~i~~~i  288 (479)
                      ++++.    .+   +...++.++.+++|+++......+..+.    +|.|. +.+.. .+ ++....+.......+.+++
T Consensus       187 ~~~~~----~~---~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~-~~yl~~~gg~~~~~~g~~~~l~~~aEi~  258 (400)
T PF03825_consen  187 SAKES----VK---KLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFF-SIYLQELGGYSGSTIGILWALGVVAEIP  258 (400)
T ss_pred             ccCCC----cc---cccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcccchhhHHHHHHHHHHHHHHH
Confidence            11100    00   1112344577788887655444333332    33333 33332 12 2233344444455677888


Q ss_pred             HHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHH---HHHHHHHhhH
Q 011720          289 GSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPF---VLYFSYGLLD  365 (479)
Q Consensus       289 ~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~  365 (479)
                      .-...+++..|  +|-|+...++.... ++=   |.. +.    +.          .+  +.+....   .-.++.|...
T Consensus       259 ~f~~~~~~~~r--~g~~~ll~~a~~~~-~vR---~~l-~a----~~----------~~--~~~~~~~~~~l~q~lhG~tf  315 (400)
T PF03825_consen  259 FFFFSGRFLKR--FGIKWLLLLALVAY-AVR---WLL-YA----YF----------SD--PWPFIVALQLLGQLLHGLTF  315 (400)
T ss_pred             HHHHHHHHHHh--cCHHHHHHHHHHHH-HHH---HHH-HH----Hh----------cC--CcHHHHHHHHHHHhhhhHHH
Confidence            87888888877  56776555443221 111   110 11    00          01  1111111   1123577776


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhHHHHHHHHH-HHHHHHHHhhhc
Q 011720          366 AMFQSMVYWVIGALADDSETLSRYTGFYKGV-QSAGAAVAWQVD  408 (479)
Q Consensus       366 ~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~-~~~g~~i~~~~~  408 (479)
                      +........++.+.. |++.|+++-+++... ..+|..++..++
T Consensus       316 ~~~~~a~~~yi~~~~-p~~~~at~Q~l~~~~~~Glg~~iG~~ig  358 (400)
T PF03825_consen  316 GLFHAASVRYIDRIA-PPELRATAQGLYSALSFGLGGAIGSLIG  358 (400)
T ss_pred             HHHHHHHHHHHHHhC-CccchHHHHHHHHHHHhhHHHHHHHHHH
Confidence            666666777899999 889999999998875 467777776655

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.01  E-value=4.5e-08  Score=99.92  Aligned_cols=155  Identities=15%  Similarity=0.096  Sum_probs=108.9

Q ss_pred             CccccccchhHHHHHHHHHHhhhhhh--------hhhhhcCCCCCCCChhhhhhHHHHHHHHHHHhhhhhhhhhhccch-
Q 011720           18 YSLFRYNSPLVQVSLIGLVCFCCPGM--------FNALSGMGGGGQLDPTAANNANTALYTTFSVFGILGGGVYNIFGP-   88 (479)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~f~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Gr-   88 (479)
                      +.....+.+|.-+.+..+..|+...-        +..++.+..+  .+.+..+...++.-++.+++++..|.-.+|.|. 
T Consensus        24 ~~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~--A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~  101 (488)
T KOG2325|consen   24 SPLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPT--ATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSV  101 (488)
T ss_pred             ccccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCC--CCcchhhHHHHHHHHHHHhcchhhcccccccCCc
Confidence            33444555666666666666665432        2223332222  234456666777777888888999999999996 


Q ss_pred             hHHHhhhhHHHHHHHHHHHhhh-ccC-chhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhh
Q 011720           89 RVTLAAGCSTYVLYAGSFLYYN-HHH-DQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVV  166 (479)
Q Consensus        89 k~~l~ig~~~~~i~~~~~~~~~-~~~-~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~i  166 (479)
                      |+.++.|.++.++....++... ..+ +.+.++++|++.|+|.|... .--.|+++.+.+++|-|+++.......+|.++
T Consensus       102 k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~il  180 (488)
T KOG2325|consen  102 KKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFA-VLRAYIADASTVEDRPRAFAATSGGFVLGIIL  180 (488)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHH-HHHHHHHhccCccchHHHHHHhhhHHHHHHHH
Confidence            8888889887776333332222 233 67899999999999988764 55689999999999999999999888888888


Q ss_pred             hhHHHhhhh
Q 011720          167 GGLIPFIMN  175 (479)
Q Consensus       167 G~~i~~~i~  175 (479)
                      ||.+.....
T Consensus       181 Gp~~q~~f~  189 (488)
T KOG2325|consen  181 GPTIQLAFT  189 (488)
T ss_pred             hHHHHHHHh
Confidence            888776543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.00  E-value=1.3e-08  Score=107.03  Aligned_cols=112  Identities=9%  Similarity=0.020  Sum_probs=78.0

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHH-HHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhh
Q 011720           62 NNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGS-FLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIM  140 (479)
Q Consensus        62 ~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~-~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i  140 (479)
                      .........+..++++++|+++||+|||+.+.++.++..+.... +... .+++...++++|++.|++.+..+.....++
T Consensus       289 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~  367 (490)
T PRK10642        289 VLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI-NSNVIGLIFAGLLMLAVILNCFTGVMASTL  367 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555666778889999999999999998887654432222 2222 235577788999999998887777777888


Q ss_pred             hcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhh
Q 011720          141 TSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIM  174 (479)
Q Consensus       141 ~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i  174 (479)
                      .|++|++.||+.+|+.+....++..+++.+...+
T Consensus       368 ~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l  401 (490)
T PRK10642        368 PAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWL  401 (490)
T ss_pred             HHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999974333334445555554433

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.99  E-value=1.3e-07  Score=91.79  Aligned_cols=297  Identities=13%  Similarity=0.089  Sum_probs=177.7

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      +....+...++-...+++.+++++++..|+|.++++..+.++..+  +..+-.  ..+.+.++.+-.+.|.|.+...+--
T Consensus        45 s~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~--G~~iR~--~~~~~~L~~gt~l~G~gIav~nVLL  120 (395)
T COG2807          45 SFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAA--GILIRS--LGGLPLLFLGTLLAGAGIAVINVLL  120 (395)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHH--HHHHHh--cccHHHHHHHHHHHHhhHHHHHHhh
Confidence            344556666777788999999999999999999999999887665  443322  2467889999999999999999999


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHH-HHHHHHHHHHHHhccCCcccccC
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAF-MCFMSAGAALSLAILPPSRVIRD  215 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~-~~l~~l~~~l~~~~~~~~~~~r~  215 (479)
                      |..+-+.. ||+-|..+|+|......|..+++.++-.+..+.     .+|+.=+.+ .....+..++  + .|..  .|+
T Consensus       121 PslIK~~F-pk~~~~mtglYs~sl~~~aaLaa~lavpla~~~-----~gW~~aL~~WAl~allAl~~--W-lPq~--~r~  189 (395)
T COG2807         121 PSLIKRDF-PKRVGLMTGLYSTSLGAGAALAAALAVPLAQHS-----GGWRGALGFWALLALLALLI--W-LPQA--LRE  189 (395)
T ss_pred             hHHHHhhc-ccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh-----ccHHHHHHHHHHHHHHHHHH--H-hhhc--ccc
Confidence            99998876 567899999999999999999988877665431     345422111 2222232222  2 2221  111


Q ss_pred             CCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhh-hhhcc--ccccc-cccccchhhhHHHHHHHHHHHHHHH
Q 011720          216 DGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNF-FYSYQ--FNNVN-GLMFNLRTRGLNNVFYWGAQMLGSV  291 (479)
Q Consensus       216 d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~-~~s~~--~~~~~-~~~f~~~~~~l~~~~~~i~~~i~~~  291 (479)
                      ..... ..+.       ++..+.+++|+-+.+...+-.+.+ +|+..  ++.+. +.+++..+.+.......+.++..++
T Consensus       190 ~~~~~-~~~~-------~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~l  261 (395)
T COG2807         190 QAASI-ATKL-------VSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTAL  261 (395)
T ss_pred             ccccc-cccc-------ccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHH
Confidence            00000 0000       111123456665555544333332 23221  24433 4677777778766677888888888


Q ss_pred             HhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHH
Q 011720          292 GIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSM  371 (479)
Q Consensus       292 ~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  371 (479)
                      ....+.+|.+ .+|+........+ .+   -..+ +.    +.    |     .+   ....  . .+..|++.++..+.
T Consensus       262 l~P~la~R~~-n~r~~~~~~~~~~-l~---G~~G-~~----~~----P-----~~---~~~l--w-~~llG~G~G~~F~l  316 (395)
T COG2807         262 LIPLLARRSK-NQRPLVVLALLLM-LV---GLVG-LL----LA----P-----GQ---LPIL--W-ALLLGLGQGGAFPL  316 (395)
T ss_pred             HHHHHHHHhc-ccchHHHHHHHHH-HH---HHHH-HH----Hh----h-----hh---HHHH--H-HHHHhCccchHHHH
Confidence            8888888742 4555333222211 11   1111 11    11    0     11   1111  1 36688888887777


Q ss_pred             HHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHH
Q 011720          372 VYWVIGALADDSETLSRYTGFYKGVQSAGAAVA  404 (479)
Q Consensus       372 ~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~  404 (479)
                      .-..+..-.+|++   ++..+.-+.|++|..++
T Consensus       317 aL~li~~rs~~a~---~Aa~LSgmaQg~GYllA  346 (395)
T COG2807         317 ALTLILLRSSDAA---IAAALSGMAQGVGYLLA  346 (395)
T ss_pred             HHHHHHhhcCChH---HHHHHHHHhhhhhHHHH
Confidence            7777777665665   34445555666665554

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.98  E-value=5e-09  Score=113.87  Aligned_cols=106  Identities=10%  Similarity=0.029  Sum_probs=87.4

Q ss_pred             HHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCC
Q 011720           66 TALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPT  145 (479)
Q Consensus        66 ~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~  145 (479)
                      .+..++..++.+++++++||+|||++++++.++..+......   ..++...+++.+++.|++.+..+++..++++|+.|
T Consensus       602 ~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~---~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P  678 (742)
T TIGR01299       602 FLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLS---FGNSESAMIALLCLFGGLSIAAWNALDVLTVELYP  678 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH---HHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            344455667889999999999999999988887666322222   24556778888999999988888888899999999


Q ss_pred             ccchHhHHHHHHHHHHhhhhhhhHHHhhh
Q 011720          146 ATRKGTYISLFWSIFNMGGVVGGLIPFIM  174 (479)
Q Consensus       146 ~~~RG~~~g~~~~~~~~G~~iG~~i~~~i  174 (479)
                      .++||+++|+..+...+|.++||.+...+
T Consensus       679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L  707 (742)
T TIGR01299       679 SDKRATAFGFLNALCKAAAVLGILIFGSF  707 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999987655

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00889 2A0110 nucleoside transporter

Probab=98.90  E-value=2.4e-08  Score=102.69  Aligned_cols=150  Identities=13%  Similarity=0.087  Sum_probs=103.3

Q ss_pred             hhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhc-cCchhhHHHHHHHHhhhhhhhhhhhhhh
Q 011720           61 ANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNH-HHDQTFAVVAGAVLGIGAGLLWAGQGAI  139 (479)
Q Consensus        61 ~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~-~~~~~~li~~R~i~G~g~g~~~~~~~~~  139 (479)
                      .....++......++.++.+.++||+|||+.+.++.++..+.......... ..+.+.+++.+++.|++.+...+....+
T Consensus       253 ~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~  332 (418)
T TIGR00889       253 ASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVF  332 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555566677889999999999999999998877653222222110 0124567889999999999988888899


Q ss_pred             hhcCCCccchHhHHHHHH-HHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCc
Q 011720          140 MTSYPTATRKGTYISLFW-SIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPS  210 (479)
Q Consensus       140 i~e~~~~~~RG~~~g~~~-~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~  210 (479)
                      +.|..|+++||+..|+.+ ....+|..+|+.++..+..+......++|+ .|.+..++.++..++..++.+++
T Consensus       333 i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       333 VEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999999999999999997 567899999999887664321100113454 45555555555555545555544

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.90  E-value=3.9e-07  Score=92.30  Aligned_cols=316  Identities=13%  Similarity=0.062  Sum_probs=177.6

Q ss_pred             HHHhhhhhhhhhhc-cchhHHHhhhhHHHHHHHHHHHhhhcc-CchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCc--c
Q 011720           72 FSVFGILGGGVYNI-FGPRVTLAAGCSTYVLYAGSFLYYNHH-HDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTA--T  147 (479)
Q Consensus        72 ~aig~l~~g~l~d~-~Grk~~l~ig~~~~~i~~~~~~~~~~~-~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~--~  147 (479)
                      .-..++++|+++|| +|+|++++.|++++.+....+...  + .+...++++-++.++|.|..-+....++.|+.||  .
T Consensus        74 VY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~--~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp  151 (498)
T COG3104          74 VYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAIS--SVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP  151 (498)
T ss_pred             HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcc--ccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc
Confidence            34567899999999 699999999999988844333221  1 3577889999999999999999999999998763  3


Q ss_pred             chHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccc-hhHHHHHHHHHHHHHHHHhccCC--------cccccCCCC
Q 011720          148 RKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVND-KTYIAFMCFMSAGAALSLAILPP--------SRVIRDDGT  218 (479)
Q Consensus       148 ~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~-~~~~i~~~l~~l~~~l~~~~~~~--------~~~~r~d~~  218 (479)
                      +|-..+++++...++|+.+++.+...+..+      .+| ..|....+-+.++++...+.++.        ++..++.+.
T Consensus       152 rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~------~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~  225 (498)
T COG3104         152 RRDGGFTLFYMGINIGSLIAPIITGLLAIN------YGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNF  225 (498)
T ss_pred             ccCCCccEEEEEeehHHHHHHHHHHHHHHh------hCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhh
Confidence            377888999999999999999998866432      334 23444344444554444433321        111110000


Q ss_pred             cccc----------c------ccCCHHH---------H---HHHHHHH----hhchHHHHHHHHHHHhhhhhhcc--c-c
Q 011720          219 RCTN----------I------KYSKVST---------E---AIEILKL----FRNWKMLLLFPAAWASNFFYSYQ--F-N  263 (479)
Q Consensus       219 ~~~~----------~------~~~~~~~---------~---~~~~~~~----~~~~r~ll~~~~~~~~~~~~s~~--~-~  263 (479)
                      ....          .      ..+.+..         +   +++..+.    --|+|++..+++++..-+++..+  . +
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~s  305 (498)
T COG3104         226 LLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGS  305 (498)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            0000          0      0000000         0   0001111    12456777777766554332211  1 1


Q ss_pred             ccc-------ccc---ccchhhhHHHHHHHHHHHHHHHHhhhhccccccC-ccceeee--hhhhhH-HHHHHHHHhHhhh
Q 011720          264 NVN-------GLM---FNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQS-LRTRGLV--GIGIVA-LFGTAIWGGGLAS  329 (479)
Q Consensus       264 ~~~-------~~~---f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~g-Rr~~~~~--g~~~~~-~~~~~~~~~~~~~  329 (479)
                      +.+       ...   ++. ..++......+.-++.+++...+.-|..-+ |+++.-.  ++.... -+.+++...    
T Consensus       306 sl~~~a~~~v~~~~~g~~v-p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~----  380 (498)
T COG3104         306 SLNLYADRNVNRQIFGFEV-PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLL----  380 (498)
T ss_pred             hHHHHHHHhhcccccceec-CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHH----
Confidence            111       111   111 122333334444455555554444331112 2232222  221110 111111111    


Q ss_pred             hcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          330 QLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      ...+..+  |   + ..  .+.+.....|++..++.-+..|.-.+...++. |++..+..++++-..++.++.++-.+++
T Consensus       381 ~~~~~~~--~---~-~~--~s~~~lil~y~l~s~gEL~iSpvGLs~~t~la-P~~~~s~~ma~wfLt~a~~~~l~g~va~  451 (498)
T COG3104         381 AGIWFGG--P---S-GL--VSVWWLVLSYVLQSFGELFISPVGLSMVTKLA-PPALKSFIMAMWFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             HHHhhcC--C---C-CC--cCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence            1011111  0   1 12  44566778889999999988888888888888 8888999999999999999999988776

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.89  E-value=1.3e-07  Score=95.27  Aligned_cols=310  Identities=13%  Similarity=0.008  Sum_probs=143.3

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCch-hhHHHHHHHHhhhhhhhhhhh
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQ-TFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~-~~li~~R~i~G~g~g~~~~~~  136 (479)
                      +...+...++......+.+++.|.++||+|.|+-++....+..+..+.+......+-. .-+.++-++.|+..+..+.+.
T Consensus        42 ~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~  121 (412)
T PF01306_consen   42 GTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAG  121 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            3344444444444445556778899999997776655543333323333221000000 112344455555555544433


Q ss_pred             hhhhhcCCCccch--HhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCcccc-
Q 011720          137 GAIMTSYPTATRK--GTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRVI-  213 (479)
Q Consensus       137 ~~~i~e~~~~~~R--G~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~~-  213 (479)
                      ....-.++++-.|  +.-.|=--+.-++|..++..+++.+...      .+...+++.....++..++.++.+|+++.. 
T Consensus       122 ~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i------~p~~~fwi~s~~~~il~lll~~~~~~~~~~~  195 (412)
T PF01306_consen  122 VPLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFNI------NPNIIFWIASAAAIILLLLLLLLKPDVPPQA  195 (412)
T ss_dssp             HHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHSS---SSSSS
T ss_pred             chHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeeee------CccHHHHHHHHHHHHHHHHHHHcCCcCchhh
Confidence            3333222211111  1111212222345666666665544221      112233333333333333334444432211 


Q ss_pred             cCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhhhhh---cccccccccccc-----chhhhHHHHHHHHH
Q 011720          214 RDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFYS---YQFNNVNGLMFN-----LRTRGLNNVFYWGA  285 (479)
Q Consensus       214 r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~~s---~~~~~~~~~~f~-----~~~~~l~~~~~~i~  285 (479)
                      +.++++  .+++  ...+.|+.++.+++|+++.+..........|.   .+++.+....|+     .+..|+.+...-+.
T Consensus       196 ~~~~~~--~~~~--~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~  271 (412)
T PF01306_consen  196 EVADAL--GAKK--DKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFL  271 (412)
T ss_dssp             -SSTTS--SS--------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccc--ccCC--CCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHH
Confidence            111110  0111  11235677788899998876665444332221   122333322232     22335555566677


Q ss_pred             HHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhH
Q 011720          286 QMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLD  365 (479)
Q Consensus       286 ~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  365 (479)
                      +++.-.+..++.+|  +|-|+.++++..++. +   =|++ ..               +.   ++.+.+.++-.+-++-.
T Consensus       272 E~~~m~~~p~li~r--ig~k~~Lllag~i~~-i---Ri~~-~~---------------~~---~~~~~i~~~klLH~~e~  326 (412)
T PF01306_consen  272 EALMMFFSPWLINR--IGAKNLLLLAGVIMA-I---RIIG-SG---------------FA---TNPWVISLIKLLHALEF  326 (412)
T ss_dssp             HHHHHHHHHHHHHH--H-HHHHHHHHHHHHH-H---HHHH-HH---------------T-----SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--cChHhHHHHHHHHHH-H---HHHH-Hh---------------hh---cchHHHHHHHHHHHHHH
Confidence            77777888888888  788887666543321 1   1211 11               11   23345666777777777


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhHHHHHH-HHHHHHHHHH
Q 011720          366 AMFQSMVYWVIGALADDSETLSRYTGFY-KGVQSAGAAV  403 (479)
Q Consensus       366 ~~~~~~~~~~~~~i~~~~~~r~~~~~~~-~~~~~~g~~i  403 (479)
                      +.......=|+.+.+ |.|..++...+. ++..++|..+
T Consensus       327 ~l~lva~fkYI~~~f-d~rlsAt~y~v~~~~~~~~~~~i  364 (412)
T PF01306_consen  327 PLLLVAAFKYITAHF-DKRLSATLYLVGFQFAKQIGIII  364 (412)
T ss_dssp             HHHHHHHHHHHHHHS--GGGHHHHHHHHHTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CHhHHHHHHHHHHHHHHHHHHHH
Confidence            666666667899999 777766665553 3333444433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.86  E-value=2.9e-07  Score=94.93  Aligned_cols=312  Identities=13%  Similarity=0.056  Sum_probs=161.5

Q ss_pred             hhhhhhhhhcc-----chhHHHhhhhHHHHHHHHHHHh-hhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCC--Ccc
Q 011720           76 GILGGGVYNIF-----GPRVTLAAGCSTYVLYAGSFLY-YNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYP--TAT  147 (479)
Q Consensus        76 ~l~~g~l~d~~-----Grk~~l~ig~~~~~i~~~~~~~-~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~--~~~  147 (479)
                      -++.|.++|.+     .||+-++++.++-.+....+.. .+...+.+...+.=++.-+|....-...-+.+.|..  +|+
T Consensus        41 Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~  120 (433)
T PF03092_consen   41 KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE  120 (433)
T ss_pred             hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc
Confidence            47889999997     3666677777655432222222 212235566666778888888888888888888887  456


Q ss_pred             chHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCcccccCCCCc-cccc---
Q 011720          148 RKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRVIRDDGTR-CTNI---  223 (479)
Q Consensus       148 ~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~~r~d~~~-~~~~---  223 (479)
                      .||...+..+....+|.++|..+++.+...    .+.++ .+.+...+..+..+..+++.+|++.+++++.. ...+   
T Consensus       121 ~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~----~~~~~-~f~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~  195 (433)
T PF03092_consen  121 SRGDLQSFVWGVRSVGSLVGSLLSGPLLDS----FGPQG-VFLISAALPLLMLIVALFLLEERKVRPADEVFSFGKEEVP  195 (433)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhhhhc----CCCeE-EehHHHHHHHHHHHHHHHhhhhccccccchhhcccccccc
Confidence            689999999999999999999888765432    12222 34444445555444555555553222111110 0001   


Q ss_pred             c-cCCHHHHHHHHHHHhhchHHHHHHH-HHHHhhhhhhc------ccccc--ccccccchhhhHHHHHHHHHHHHHHHHh
Q 011720          224 K-YSKVSTEAIEILKLFRNWKMLLLFP-AAWASNFFYSY------QFNNV--NGLMFNLRTRGLNNVFYWGAQMLGSVGI  293 (479)
Q Consensus       224 ~-~~~~~~~~~~~~~~~~~~r~ll~~~-~~~~~~~~~s~------~~~~~--~~~~f~~~~~~l~~~~~~i~~~i~~~~~  293 (479)
                      . ....++..++.|+.+++|.++.... ..+........      ++.+.  ....|+..-.+....+..++.++|..+.
T Consensus       196 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y  275 (433)
T PF03092_consen  196 CLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLY  275 (433)
T ss_pred             hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            0 0114555677777777766554333 22222211100      00000  0111444444555566667777777766


Q ss_pred             hhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHH-hhHHHHHHHH
Q 011720          294 GYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYG-LLDAMFQSMV  372 (479)
Q Consensus       294 g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~  372 (479)
                      .++.-+  +.-|+...+.....  +  .....-+.+...+...     .+..+  .  .....--++.. ...-.+.| .
T Consensus       276 ~~~~~~--~~~R~~~~~t~~~~--~--~~~l~~~~lv~~~n~~-----~Gi~d--~--~f~lgd~~l~~~~~~i~~mP-~  339 (433)
T PF03092_consen  276 RKYFSN--WSWRRIFVVTTLVS--V--LASLFDLLLVTRWNLD-----LGIPD--Q--WFALGDTILEEVIGMIAFMP-S  339 (433)
T ss_pred             HHHHhC--CCHHHHHHHHHHHH--H--HHhcccEEEEEEEeee-----eCcCC--e--EEEEEhHHHHHHHHHHHHHH-H
Confidence            655433  22333222221111  0  0100001111111100     00011  1  11111112222 22233333 4


Q ss_pred             HHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          373 YWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       373 ~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      ..+.+++. |++.-+..+++...+.++|..++..++.
T Consensus       340 lvl~a~lc-P~G~Egt~yall~s~~Nlg~~~s~~lg~  375 (433)
T PF03092_consen  340 LVLAARLC-PKGSEGTVYALLASFSNLGSSVSSTLGA  375 (433)
T ss_pred             HHHHHHHC-CCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44678888 7777789999999999999888877663

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.81  E-value=1.5e-06  Score=85.15  Aligned_cols=225  Identities=17%  Similarity=0.132  Sum_probs=119.9

Q ss_pred             hhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh-hh
Q 011720           60 AANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ-GA  138 (479)
Q Consensus        60 ~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~-~~  138 (479)
                      ........-+....+...+.|.++||+|||+..++-++.|.+   ++++- ..++++.++++|++.|++.+...++- .=
T Consensus        70 qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~---scl~k-~~~~~~~L~~GRvlgGiaTSLLfS~FEsW  145 (354)
T PF05631_consen   70 QIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSL---SCLTK-HSSNYPVLLLGRVLGGIATSLLFSAFESW  145 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH---HHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444455566678899999999999999988888775   55544 57889999999999999999976644 44


Q ss_pred             hhhcCCC----ccchHhHHHHHH-HHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCcccc
Q 011720          139 IMTSYPT----ATRKGTYISLFW-SIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRVI  213 (479)
Q Consensus       139 ~i~e~~~----~~~RG~~~g~~~-~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~~  213 (479)
                      ++.|.-.    ++..+.-++... ....+-.+++++++-......   +..+-..|...+++.+++.++....-+|..- 
T Consensus       146 ~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~---~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg-  221 (354)
T PF05631_consen  146 MVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWF---GFGPVAPFDAAIVLLAVAAVLILKTWPENYG-  221 (354)
T ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh---CCCCcchHHHHHHHHHHHHHHHHhcccccCC-
Confidence            5667632    222222222211 111122233444433221110   1111123444444444443332222222211 


Q ss_pred             cCCCCcccccccCCHHHHHHHHHHHh-hchHHHHHHHHHHHh-hhhhhccc--cccccccccchhhhHHHHHHHHHHHHH
Q 011720          214 RDDGTRCTNIKYSKVSTEAIEILKLF-RNWKMLLLFPAAWAS-NFFYSYQF--NNVNGLMFNLRTRGLNNVFYWGAQMLG  289 (479)
Q Consensus       214 r~d~~~~~~~~~~~~~~~~~~~~~~~-~~~r~ll~~~~~~~~-~~~~s~~~--~~~~~~~f~~~~~~l~~~~~~i~~~i~  289 (479)
                        |.+     ++.+..+.+++.++.. +|||++++-...... +-+|.+.+  ...+...-+.-.-|++...+.+..++|
T Consensus       222 --~~~-----~~~~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlG  294 (354)
T PF05631_consen  222 --DTS-----SSSSLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLG  294 (354)
T ss_pred             --Ccc-----cccchHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHH
Confidence              100     1223334455555544 578987776554432 22344331  111110001112477888889999999


Q ss_pred             HHHhhhhccc
Q 011720          290 SVGIGYVMDF  299 (479)
Q Consensus       290 ~~~~g~l~Dr  299 (479)
                      +.+..++..+
T Consensus       295 S~lf~~l~s~  304 (354)
T PF05631_consen  295 SSLFSRLLSK  304 (354)
T ss_pred             HHHHHHHHhC
Confidence            9988766644

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.72  E-value=1.3e-07  Score=96.47  Aligned_cols=128  Identities=15%  Similarity=0.097  Sum_probs=94.5

Q ss_pred             HHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccc
Q 011720           69 YTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATR  148 (479)
Q Consensus        69 ~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~  148 (479)
                      ..+..++.+..+.+.||+|||+.+.++.++..+......   ..++.+.+++.+++.|++.+...+.....+.+..|+++
T Consensus       268 ~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  344 (408)
T PRK09874        268 GVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMS---FVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI  344 (408)
T ss_pred             HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc
Confidence            344455667889999999999999988776554222221   23567888899999999999988888888888899999


Q ss_pred             hHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHh
Q 011720          149 KGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLA  205 (479)
Q Consensus       149 RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~  205 (479)
                      ||+.++++.....+|..+|+++...+..+      .+|+ .|.+..++.+++.++..+
T Consensus       345 ~g~~~~~~~~~~~~g~~~gp~~~G~l~~~------~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        345 AGRIFSYNQSFRDIGNVTGPLMGAAISAN------YGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             ceeeehHHHHHHHHHHHhhHHHHHHHHhh------cchhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998766421      2332 344445555555554443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.71  E-value=1.8e-06  Score=88.99  Aligned_cols=296  Identities=14%  Similarity=0.064  Sum_probs=165.2

Q ss_pred             HHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhh--hhhhhhhhhhcCCCccchH
Q 011720           73 SVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGL--LWAGQGAIMTSYPTATRKG  150 (479)
Q Consensus        73 aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~--~~~~~~~~i~e~~~~~~RG  150 (479)
                      .+..++.|.++||+|||..+.+..+...+........    .+|.++    +.|+..+.  .+....+|++|+++.++|.
T Consensus        76 ~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~----~~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~  147 (463)
T KOG2816|consen   76 LISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ----GYWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERS  147 (463)
T ss_pred             HHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH----HHHHhh----hcccccchhhhhhhhhhheeeccchhHHH
Confidence            4556788999999999999999988776643333332    244444    55555544  4556778999999999999


Q ss_pred             hHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCcccccCCC--CcccccccCC-
Q 011720          151 TYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRVIRDDG--TRCTNIKYSK-  227 (479)
Q Consensus       151 ~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~~r~d~--~~~~~~~~~~-  227 (479)
                      ...|+....+..+..+|+.++.......    +. -..+.+..++.++..+...++.||+..++++.  +..+...... 
T Consensus       148 ~~~gll~~~~~~~~~~~p~~~~~~~~~~----~~-a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~  222 (463)
T KOG2816|consen  148 SSIGLLSGTFGAGLVIGPALGGYLVKFL----GI-ALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLD  222 (463)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhc----Cc-hHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCccc
Confidence            9999999989999999998887664321    11 12445556666666666677777765332211  1110000000 


Q ss_pred             ---HHHHHHHHHHHhhchHHHHHHHHHHHhhhhhhc----ccccccc--ccccchhhhHHHHHHHHHHHHHHHHhhhhcc
Q 011720          228 ---VSTEAIEILKLFRNWKMLLLFPAAWASNFFYSY----QFNNVNG--LMFNLRTRGLNNVFYWGAQMLGSVGIGYVMD  298 (479)
Q Consensus       228 ---~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~~s~----~~~~~~~--~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~D  298 (479)
                         ..+..+...+.-.+|..+.+....++..+....    ....+..  .+|+..+.+......++...++.++...+.-
T Consensus       223 ~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~  302 (463)
T KOG2816|consen  223 SSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLS  302 (463)
T ss_pred             chhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               111122222211244444444444443332111    1112222  3456666665544555566666666654443


Q ss_pred             ccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 011720          299 FSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGA  378 (479)
Q Consensus       299 r~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  378 (479)
                      +. +|-|+....|..... ... .+.   .+    .         |..     +. ...............+...+..+.
T Consensus       303 ~~-l~~~~~i~lGl~~~~-~~~-~~~---af----~---------~~~-----w~-~~~~~v~~~~~~~~~pa~~s~~s~  357 (463)
T KOG2816|consen  303 SI-LGEKRLISLGLLSEF-LQL-LLF---AF----A---------TET-----WM-MFAAGVVVALAGIVFPAIRAFASI  357 (463)
T ss_pred             HH-HhhhhHhhHHHHHHH-HHH-HHH---HH----h---------ccc-----hh-hhHHHHHHHhhcchhHHHHhHHHh
Confidence            32 455554444543321 222 221   11    1         111     11 111222333344455656677777


Q ss_pred             hcCCchhhhHHHHHHHHHHHHHHHHHhhh
Q 011720          379 LADDSETLSRYTGFYKGVQSAGAAVAWQV  407 (479)
Q Consensus       379 i~~~~~~r~~~~~~~~~~~~~g~~i~~~~  407 (479)
                      +. +++++++.+++...+++++..++..+
T Consensus       358 ~v-~~~e~g~v~~~is~i~~l~~~~~~~~  385 (463)
T KOG2816|consen  358 LV-SPEEQGKVFGIISGIEGLSGVVSPAL  385 (463)
T ss_pred             hc-ccccccchhhHHHHHHHHhhhhhHHH
Confidence            77 78899999999999998888887554

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.69  E-value=2.7e-07  Score=94.01  Aligned_cols=108  Identities=14%  Similarity=0.158  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCC
Q 011720           65 NTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYP  144 (479)
Q Consensus        65 ~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~  144 (479)
                      .+....+..++.++.+++.||+|||+.+.++..+..+.....  . ..++.+.+++++++.|++.+..++.......|..
T Consensus       255 ~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~  331 (399)
T PRK05122        255 LTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLL--W-LAPSPWMALIGAALTGFGFSLVFPALGVEAVKRV  331 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH--H-HhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC
Confidence            344455566778999999999999999888876655422221  1 2456777888999999999988877777778889


Q ss_pred             CccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          145 TATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       145 ~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      |+++||+..|++.....+|..+++.+...+.
T Consensus       332 ~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  362 (399)
T PRK05122        332 PPQNRGAALGAYSVFLDLSLGITGPLAGLVA  362 (399)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988887765553

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.69  E-value=5.3e-07  Score=91.89  Aligned_cols=112  Identities=13%  Similarity=0.090  Sum_probs=83.3

Q ss_pred             hhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhh
Q 011720           60 AANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAI  139 (479)
Q Consensus        60 ~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~  139 (479)
                      ..+...+.......++.++.|+++||+|||+.+..+.+...+......   ..++.+.+++.|++.+++.|...+....+
T Consensus       253 ~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~g~~~~~~~~~  329 (393)
T PRK15011        253 LAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGML---MAHSPAILLGLQLLNAIYIGILGGIGMLY  329 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444555566789999999999999988877654443221111   23567778889999999888877777778


Q ss_pred             hhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          140 MTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       140 i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      ..|..| ++||+.+++++...++|..+|+.++..+.
T Consensus       330 ~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~  364 (393)
T PRK15011        330 FQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVA  364 (393)
T ss_pred             HHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889876 56999999999999999999999887653

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.68  E-value=3.5e-07  Score=90.55  Aligned_cols=115  Identities=20%  Similarity=0.206  Sum_probs=95.1

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhccchhH-HHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIFGPRV-TLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~-~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      +...+...+.......++.++.+++.||+|||+ .+.++.++..+......   ..++.+.+++..++.|++.+..++..
T Consensus       210 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~  286 (352)
T cd06174         210 AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA---LAPSLALLLVALLLLGFGLGFAFPAL  286 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHhccchhH
Confidence            344445556666777788899999999999999 88888887666332222   24567888999999999999999999


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      ..++.|..|+++|++.++++.....+|..+++.+...+.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~  325 (352)
T cd06174         287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL  325 (352)
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999887664

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.68  E-value=3.1e-07  Score=93.81  Aligned_cols=114  Identities=13%  Similarity=0.046  Sum_probs=87.8

Q ss_pred             hhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhh
Q 011720           59 TAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGA  138 (479)
Q Consensus        59 ~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~  138 (479)
                      ...+...+....+..++.++.|++.||+|||+.+.++.+...+.....  . ..++.+.+++..++.|++.+...+...+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~  331 (406)
T PRK11551        255 SQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAAL--A-AAPSFAGMLLAGFAAGLFVVGGQSVLYA  331 (406)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--H-hcCcHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            334445556666677888999999999999999887655443321111  1 2346677777888889888777777778


Q ss_pred             hhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          139 IMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       139 ~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      +..|..|+++||+..|++.....+|..+|+.+...+.
T Consensus       332 ~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  368 (406)
T PRK11551        332 LAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLL  368 (406)
T ss_pred             HHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhh
Confidence            8899999999999999999999999999999887664

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.67  E-value=7.4e-07  Score=91.50  Aligned_cols=113  Identities=12%  Similarity=0.035  Sum_probs=86.6

Q ss_pred             hhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhh
Q 011720           60 AANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAI  139 (479)
Q Consensus        60 ~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~  139 (479)
                      ..+...+....+..++.++.+++.||.++|+.+.++.++..+....  . ...++.+.+.++.++.|++.+...+...++
T Consensus       260 ~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  336 (417)
T PRK10489        260 QIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGL--F-GLMPMWILAVLCLALFGYLSAISSLLQYTL  336 (417)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHH--H-HccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555566677888999999988888888777655542222  1 134566777888999999998877777788


Q ss_pred             hhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          140 MTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       140 i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      +.|..|++.||+.+|++....++|..+|+.+...+.
T Consensus       337 ~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~  372 (417)
T PRK10489        337 LQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLG  372 (417)
T ss_pred             HHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHH
Confidence            899999999999999999999999999999887664

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.62  E-value=7.2e-07  Score=83.64  Aligned_cols=160  Identities=17%  Similarity=0.138  Sum_probs=113.5

Q ss_pred             hcCCCCccccccchhHHHHHHHHHHhhhhhhhhhhh-cC-CCCCCCChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhH
Q 011720           13 QISPKYSLFRYNSPLVQVSLIGLVCFCCPGMFNALS-GM-GGGGQLDPTAANNANTALYTTFSVFGILGGGVYNIFGPRV   90 (479)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~l-~~~~~~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~   90 (479)
                      |.||.++.+-+.+++..+.+++++....-.-+.+.. .+ ...-..++...+..++..|+..++.+++.|.++|++||+.
T Consensus       252 e~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~  331 (459)
T KOG4686|consen  252 EEPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNL  331 (459)
T ss_pred             CCcccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhccee
Confidence            567777778888888877777765443311111111 00 0111123344556788999999999999999999999998


Q ss_pred             HHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHH
Q 011720           91 TLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLI  170 (479)
Q Consensus        91 ~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i  170 (479)
                      ..+.+..+-.+..=+.+.    -+.+.-+.+-.+.|+..+....+--..++.+.|+++.|.+.|..++..++|..+-+++
T Consensus       332 ~wv~~a~~~tl~~H~~l~----Ft~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Ii  407 (459)
T KOG4686|consen  332 WWVASACILTLLGHSGLF----FTFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPII  407 (459)
T ss_pred             hhHHHHHHHHHHHhhhHH----hhhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhh
Confidence            888887765542222222    2356668889999999988755556677777899999999999999999999999999


Q ss_pred             Hhhhhh
Q 011720          171 PFIMNY  176 (479)
Q Consensus       171 ~~~i~~  176 (479)
                      ...+.-
T Consensus       408 ag~i~d  413 (459)
T KOG4686|consen  408 AGFIAD  413 (459)
T ss_pred             hheeec
Confidence            886643

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.58  E-value=7.7e-07  Score=91.50  Aligned_cols=138  Identities=11%  Similarity=-0.019  Sum_probs=97.7

Q ss_pred             hhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhh
Q 011720           61 ANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIM  140 (479)
Q Consensus        61 ~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i  140 (479)
                      .+...++......++.+++|++.||+|||+.+.++.+++.+....  .. .+++.+.+++.+++.|++.+...+....++
T Consensus       264 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l--~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  340 (420)
T PRK09528        264 FGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIG--SG-FATGPLEVSILKLLHAFEVPFLLVGVFKYI  340 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH--HH-hcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555666788899999999999999998888876653222  22 356788889999999999988877777888


Q ss_pred             hcCCCccchHhHHHH-HHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhcc
Q 011720          141 TSYPTATRKGTYISL-FWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAIL  207 (479)
Q Consensus       141 ~e~~~~~~RG~~~g~-~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~  207 (479)
                      .|..|++.|+...+. ++....+|.++|+.+...+...      .+|+ .|.+..++.++..++.+++.
T Consensus       341 ~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~------~G~~~~f~~~~~~~~i~~~~~~~~~  403 (420)
T PRK09528        341 TLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS------IGFQGTYLILGGIVLLFTLISVFTL  403 (420)
T ss_pred             HHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh------hCchHHHHHHHHHHHHHHHHHHHHh
Confidence            898899999887655 6677789999999887655321      2343 34444444444444444443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.57  E-value=1.1e-06  Score=89.22  Aligned_cols=133  Identities=5%  Similarity=-0.104  Sum_probs=98.7

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhh
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQG  137 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~  137 (479)
                      +...+...++......++.++++.+.||+|+|+.+.++.+...+....  . ..++|.+.+++.++++|++.+..+++..
T Consensus       239 ~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~--~-~~~~~~~~~~~~q~l~g~~~~~~~~~~~  315 (382)
T TIGR00902       239 ASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAI--I-GAIEAFPLIFLLQILHCGTFAVCHLAAM  315 (382)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHH--H-HhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444445556788999999999999999998877663222  2 2357889999999999999999999999


Q ss_pred             hhhhcCCCccchHhHHHHHH-HHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHH
Q 011720          138 AIMTSYPTATRKGTYISLFW-SIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGA  200 (479)
Q Consensus       138 ~~i~e~~~~~~RG~~~g~~~-~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~  200 (479)
                      .++.+. |+++|++..++++ ....+|..+|+.++..+..+      .+...|+....+.+++.
T Consensus       316 ~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~------~g~~~~~~~~~~~~~~~  372 (382)
T TIGR00902       316 RYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT------LGAGTFVFMAIIAAAAF  372 (382)
T ss_pred             HHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHH
Confidence            999988 9999999999987 45788999999998876422      33455655555555443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.55  E-value=8.9e-07  Score=88.70  Aligned_cols=115  Identities=10%  Similarity=0.029  Sum_probs=86.8

Q ss_pred             hhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhh
Q 011720           60 AANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAI  139 (479)
Q Consensus        60 ~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~  139 (479)
                      ......++......++.++.+++.||+|||+.+.++.++..+......... ..+...++...++.|++.+...+..+.+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~~  319 (377)
T TIGR00890       241 FLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP-MLNDVLFLATVALVFFTWGGTISLFPSL  319 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc-cchhHHHHHHHHHHHHHhccchhccHHH
Confidence            334445556666778889999999999999999888776655322222211 1122345567888899888877777788


Q ss_pred             hhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          140 MTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       140 i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      +.|..|+++||+..|++.....+|..+|+.+...+.
T Consensus       320 ~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~  355 (377)
T TIGR00890       320 VSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHAL  355 (377)
T ss_pred             HHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998877653

>PRK10504 putative transporter; Provisional

Probab=98.53  E-value=2e-06  Score=89.72  Aligned_cols=112  Identities=13%  Similarity=-0.007  Sum_probs=81.8

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhc
Q 011720           63 NANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTS  142 (479)
Q Consensus        63 ~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e  142 (479)
                      ...........++.++.+++.||+|||+.+.++.++..+...........++.+.+.+.-++.|++.+...+....++.+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  380 (471)
T PRK10504        301 LMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLK  380 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344455789999999999999998888666533332222112334445566778889999888888888889


Q ss_pred             CCCccchHhHHHHHHHHHHhhhhhhhHHHhhh
Q 011720          143 YPTATRKGTYISLFWSIFNMGGVVGGLIPFIM  174 (479)
Q Consensus       143 ~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i  174 (479)
                      ..|+++||...+++.....+|..+|+.+...+
T Consensus       381 ~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l  412 (471)
T PRK10504        381 DLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL  412 (471)
T ss_pred             cCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998876644

>PRK12382 putative transporter; Provisional

Probab=98.53  E-value=9.6e-07  Score=89.83  Aligned_cols=107  Identities=16%  Similarity=0.163  Sum_probs=85.2

Q ss_pred             HHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCC
Q 011720           66 TALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPT  145 (479)
Q Consensus        66 ~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~  145 (479)
                      .....+..++.++.+.+.||+|||+.+.++..+..+....  .. ..++.+.+++.+++.|++.+...+.....+.|..|
T Consensus       256 ~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~  332 (392)
T PRK12382        256 TAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLL--LW-LAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVP  332 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHH--HH-HcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence            3334445667899999999999999998887766553222  21 24567778889999999999887777788888899


Q ss_pred             ccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          146 ATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       146 ~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      +++||+..|+++....+|..+|+.+...+.
T Consensus       333 ~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~  362 (392)
T PRK12382        333 SQVRGTALGGYAAFQDIAYGVSGPLAGMLA  362 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998877654

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.51  E-value=1.9e-06  Score=90.03  Aligned_cols=118  Identities=14%  Similarity=-0.007  Sum_probs=79.7

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      ++...+...+....+..++.+++|+++||+|||+.+.++.....+........ ..++...+++.+++.|+.........
T Consensus       292 s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~~~~~~~~  370 (467)
T PRK09556        292 SKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQ-HATSEYMYLASLFALGFLVFGPQLLI  370 (467)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHhhHHHHH
Confidence            34444555566777788899999999999999988766544333211111111 23456667788888886543333333


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHh-hhhhhhHHHhhhh
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNM-GGVVGGLIPFIMN  175 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~-G~~iG~~i~~~i~  175 (479)
                      +....|..|++.||++.|+.....++ |..+++.+...+.
T Consensus       371 ~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~  410 (467)
T PRK09556        371 GVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIA  410 (467)
T ss_pred             HHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHh
Confidence            45667999999999999999888775 6677777666553

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.50  E-value=1.6e-06  Score=87.45  Aligned_cols=116  Identities=16%  Similarity=0.017  Sum_probs=83.9

Q ss_pred             hhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHH-hhhccCchhhHHHHHHHHhhhhhhhhhhhhh
Q 011720           60 AANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFL-YYNHHHDQTFAVVAGAVLGIGAGLLWAGQGA  138 (479)
Q Consensus        60 ~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~-~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~  138 (479)
                      ......+.......++.++.++++||+|||+.+.++..+..+...... .....++.+.++...++.|++.+..++....
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  335 (394)
T TIGR00883       256 SALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGS  335 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHH
Confidence            344445555666777889999999999999988766544333211111 1111245677788889999999888888889


Q ss_pred             hhhcCCCccchHhHHHH-HHHHHHhhhhhhhHHHhhhh
Q 011720          139 IMTSYPTATRKGTYISL-FWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       139 ~i~e~~~~~~RG~~~g~-~~~~~~~G~~iG~~i~~~i~  175 (479)
                      ++.|..|+++|++..++ +.....+|..+||.+...+.
T Consensus       336 ~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~  373 (394)
T TIGR00883       336 FLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALV  373 (394)
T ss_pred             HHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHH
Confidence            99999999999999998 45556788888888877654

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.47  E-value=2.1e-06  Score=88.24  Aligned_cols=115  Identities=13%  Similarity=0.108  Sum_probs=75.4

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhh--hhhhhh
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGA--GLLWAG  135 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~--g~~~~~  135 (479)
                      +.......+....+..++.++.+.+.||+|||+.+..+.++..+........ ..++.  ....-++.|++.  ......
T Consensus       265 ~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~  341 (426)
T PRK12307        265 TGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRI-PQDNY--LLLGACLFGLMATNVGVGGL  341 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-ccccH--HHHHHHHHHHHHhcccHhHH
Confidence            3344444555556677788999999999999999888876544422222111 11122  222223333332  222344


Q ss_pred             hhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          136 QGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       136 ~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      .+.++.|..|+++||+.+|+......+|..+|+.+...+.
T Consensus       342 ~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~  381 (426)
T PRK12307        342 VPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLG  381 (426)
T ss_pred             HHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence            5677889999999999999999999999999999876654

>PRK09952 shikimate transporter; Provisional

Probab=98.47  E-value=3.5e-06  Score=87.22  Aligned_cols=104  Identities=13%  Similarity=0.010  Sum_probs=73.0

Q ss_pred             HHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhh-hccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccch
Q 011720           71 TFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYY-NHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRK  149 (479)
Q Consensus        71 ~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~-~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~R  149 (479)
                      ...++.++.|+++||+|||+.+.++.++..+........ ...++.+.+++.-++.|++.+..++...+++.|..|++.|
T Consensus       298 ~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r  377 (438)
T PRK09952        298 LSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYR  377 (438)
T ss_pred             HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchh
Confidence            345667889999999999999888766443322222111 1112344455667777888888877888899999999999


Q ss_pred             HhHHHHHH-HHHHhhhhhhhHHHhhh
Q 011720          150 GTYISLFW-SIFNMGGVVGGLIPFIM  174 (479)
Q Consensus       150 G~~~g~~~-~~~~~G~~iG~~i~~~i  174 (479)
                      +...++-+ ....+|..++|.+...+
T Consensus       378 ~tg~g~~~~~~~~lgg~~~p~i~g~l  403 (438)
T PRK09952        378 YSGAGVGYQVASVVGGGFTPFIAAAL  403 (438)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            98888854 34457888888877655

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.45  E-value=4.7e-06  Score=83.81  Aligned_cols=105  Identities=15%  Similarity=0.108  Sum_probs=79.1

Q ss_pred             HHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCc
Q 011720           67 ALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTA  146 (479)
Q Consensus        67 ~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~  146 (479)
                      .......++.++++++.||+|||+.+.++.++..+......   ..++.+.+++.+++.|++.+...+....++.|..| 
T Consensus       243 ~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-  318 (375)
T TIGR00899       243 TAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLA---ADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMP-  318 (375)
T ss_pred             HHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-
Confidence            33333455678899999999999998887665443222211   13467778889999999999887777778888875 


Q ss_pred             cchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          147 TRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       147 ~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      ++|++.++++....++|..+|+.+...+.
T Consensus       319 ~~~~~~~~~~~~~~~~g~~~g~~~~g~~~  347 (375)
T TIGR00899       319 GRAGAATTLYTNTGRVGWIIAGSVGGILA  347 (375)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999998877653

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.45  E-value=3.5e-06  Score=89.76  Aligned_cols=60  Identities=17%  Similarity=0.256  Sum_probs=55.7

Q ss_pred             hHHHHHHHHhhhhhhhhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhh
Q 011720          117 FAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNY  176 (479)
Q Consensus       117 ~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~  176 (479)
                      +++++-++.|+|....++-..+|+.|...+++-..++|+.+++..+|+++|.+++..++.
T Consensus       239 lff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~  298 (735)
T KOG3626|consen  239 LFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLK  298 (735)
T ss_pred             HHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            568899999999999999999999999999999999999999999999999999887653

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.43  E-value=2.3e-06  Score=88.55  Aligned_cols=144  Identities=13%  Similarity=0.000  Sum_probs=87.1

Q ss_pred             hhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHh--hhccC------chhhHHHHHHHHhhhhhh-
Q 011720           61 ANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLY--YNHHH------DQTFAVVAGAVLGIGAGL-  131 (479)
Q Consensus        61 ~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~--~~~~~------~~~~li~~R~i~G~g~g~-  131 (479)
                      .............++.+++++++||+|||+.+.++.++..+.......  .....      +...+....++ +.+.+. 
T Consensus       321 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  399 (481)
T TIGR00879       321 AFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLF-IAFFAMG  399 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHH-HHHHHcc
Confidence            334444555666778899999999999999998887655543222221  10111      22222223332 333332 


Q ss_pred             hhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCc
Q 011720          132 LWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPS  210 (479)
Q Consensus       132 ~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~  210 (479)
                      ..+....++.|..|+++||+.+++.....++|..+++.+...+..+    .++.+ .|++..++.+++.++.+++.||.
T Consensus       400 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~----~~~~~-~f~~~~~~~~~~~i~~~~~~~~~  473 (481)
T TIGR00879       400 WGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES----IGVGG-VFIFFGGLNVLGLIFVYFFLPET  473 (481)
T ss_pred             ccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCccc-eehhHHHHHHHHHHHHheecccC
Confidence            2344556678999999999999999999999999999876654321    12222 34444555555555555555543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00898 2A0119 cation transport protein

Probab=98.43  E-value=9.3e-06  Score=85.56  Aligned_cols=100  Identities=8%  Similarity=-0.002  Sum_probs=76.7

Q ss_pred             HHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccchHh
Q 011720           72 FSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGT  151 (479)
Q Consensus        72 ~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~RG~  151 (479)
                      ...+.++.+.+.||+|||+.+.++.++..+........ ...+.+..++.-++.+++.+..++....+..|..|++.|++
T Consensus       368 ~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~  446 (505)
T TIGR00898       368 ELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV-PVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNL  446 (505)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhh
Confidence            34567889999999999999999887655532222221 11222455666677777777777788889999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhHHHh
Q 011720          152 YISLFWSIFNMGGVVGGLIPF  172 (479)
Q Consensus       152 ~~g~~~~~~~~G~~iG~~i~~  172 (479)
                      .+|+......+|.+++|.+..
T Consensus       447 ~~g~~~~~~~ig~~i~p~i~~  467 (505)
T TIGR00898       447 GVGVCSTMARVGSIISPFLVY  467 (505)
T ss_pred             hHhHHHHHHHHHHHHHhHHHH
Confidence            999999999999999998876

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.41  E-value=5.8e-06  Score=86.37  Aligned_cols=144  Identities=10%  Similarity=0.042  Sum_probs=86.0

Q ss_pred             HHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchh-hHHHHHHHHhhhhhhhh-hhhhhhhhcCC
Q 011720           67 ALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQT-FAVVAGAVLGIGAGLLW-AGQGAIMTSYP  144 (479)
Q Consensus        67 ~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~-~li~~R~i~G~g~g~~~-~~~~~~i~e~~  144 (479)
                      .......++.+++++++||+|||+.++++.++..+....+......+..+ ..+.+-++.+++.+..+ +....++.|..
T Consensus       314 ~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  393 (479)
T PRK10077        314 IVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIF  393 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhC
Confidence            34445567789999999999999999999887666333322211111111 22333344444444433 45678889999


Q ss_pred             CccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccc-hhHHHHHHHHHHHHHHHHhccCCc
Q 011720          145 TATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVND-KTYIAFMCFMSAGAALSLAILPPS  210 (479)
Q Consensus       145 ~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~-~~~~i~~~l~~l~~~l~~~~~~~~  210 (479)
                      |+++||+.+|+......+|.++++.+...+..........+| ..+.++.++.++..++..++.||+
T Consensus       394 p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  460 (479)
T PRK10077        394 PNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET  460 (479)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccC
Confidence            999999999999999999999987665433200000011223 234444444455444444444443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.40  E-value=8.6e-06  Score=83.04  Aligned_cols=114  Identities=9%  Similarity=-0.004  Sum_probs=78.2

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhh
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQG  137 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~  137 (479)
                      +...+...+....+..++.++.+++.||+|||+.+.++..+..+........  .++...+.  -++.|++.+...+...
T Consensus       239 ~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~--~~l~g~g~g~~~~~~~  314 (393)
T PRK09705        239 AQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWL--PLQLPVLW--AMVCGLGLGGAFPLCL  314 (393)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHc--cchHHHHH--HHHHHHhccchHHHHH
Confidence            4444455566666678889999999999999999888876554422222211  12222222  2466888777666555


Q ss_pred             hhhhcCC-CccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          138 AIMTSYP-TATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       138 ~~i~e~~-~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      ....+.. |+++||+.+|+.+....++..+|+.+...+.
T Consensus       315 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~  353 (393)
T PRK09705        315 LLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLR  353 (393)
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555 4688999999999999999999998877664

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.39  E-value=2e-06  Score=89.60  Aligned_cols=116  Identities=13%  Similarity=-0.023  Sum_probs=83.8

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhc--cchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNI--FGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~--~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      +.......++...+..++.++++.++||  +++|+...++...........+. ...++.+.+++.+++.|++.+..++.
T Consensus       275 ~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~~~~~~i~~~~~G~~~g~~~~~  353 (455)
T TIGR00892       275 EYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLC-ALAGDYTGLVIYCIFFGLSFGSVGAL  353 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhchHHHH
Confidence            4444455555556666677888999997  34454444433222211111122 23467888899999999999998888


Q ss_pred             hhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhh
Q 011720          136 QGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIM  174 (479)
Q Consensus       136 ~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i  174 (479)
                      ...++.|..|+++||+.+|++....++|.++|+.+...+
T Consensus       354 ~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l  392 (455)
T TIGR00892       354 LFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRL  392 (455)
T ss_pred             HHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeee
Confidence            888999999999999999999999999999999887755

>TIGR00895 2A0115 benzoate transport

Probab=98.38  E-value=3.2e-06  Score=85.40  Aligned_cols=113  Identities=18%  Similarity=0.123  Sum_probs=85.2

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhh
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQG  137 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~  137 (479)
                      +...+...+....+..++.++.+++.||+|||+.+....+ ..+.......  ...+.+.+++..++.|++.+...+...
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~  360 (398)
T TIGR00895       284 LSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLL-GAVFAVLVGS--TLFSPTLLLLLGAIAGFFVNGGQSGLY  360 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH-HHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455566667778889999999999999954443333 2221111111  134667778889999999999888889


Q ss_pred             hhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhh
Q 011720          138 AIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFI  173 (479)
Q Consensus       138 ~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~  173 (479)
                      .++.|..|+++||+.+|++.....+|..+|+.+...
T Consensus       361 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~  396 (398)
T TIGR00895       361 ALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY  396 (398)
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            999999999999999999999999999999987653

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.37  E-value=3e-06  Score=88.94  Aligned_cols=118  Identities=10%  Similarity=0.032  Sum_probs=82.6

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      ++...+...+....+..++++++|+++||+|||+.+.++.++..+........ ...+.+.+.+..++.|+......+..
T Consensus       309 ~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (496)
T PRK03893        309 DPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI-GGANVWVLGLLLFFQQMLGQGISGLL  387 (496)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHHHhcccchhh
Confidence            34445555666677778889999999999999999888766544422221111 12333444455555444333344566


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      +.++.|..|+++||+.+|+++....+|..+|+++...+.
T Consensus       388 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~  426 (496)
T PRK03893        388 PKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIA  426 (496)
T ss_pred             HHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHh
Confidence            778889999999999999999999999999999887664

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.36  E-value=7.6e-06  Score=83.01  Aligned_cols=110  Identities=5%  Similarity=-0.084  Sum_probs=82.6

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhh
Q 011720           62 NNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMT  141 (479)
Q Consensus        62 ~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~  141 (479)
                      +...++......+..++.+.+.||+|+|+.+.++.+...+....  .. ..++.+.+++..++.|++.+...+....++.
T Consensus       243 g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  319 (382)
T PRK11128        243 GYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGL--MG-STTALPWLIVIQILHCGTFTVCHLAAMRYIA  319 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH--HH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444445556688999999999999999888776652222  22 3567888899999999999998888888888


Q ss_pred             cCCCccchHhHHHHHH-HHHHhhhhhhhHHHhhhh
Q 011720          142 SYPTATRKGTYISLFW-SIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       142 e~~~~~~RG~~~g~~~-~~~~~G~~iG~~i~~~i~  175 (479)
                      +. +++++++..+++. .....|..+|+.++..+.
T Consensus       320 ~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~  353 (382)
T PRK11128        320 AR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLY  353 (382)
T ss_pred             HC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            86 5677899999886 445777788998887664

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.36  E-value=1.5e-06  Score=89.23  Aligned_cols=113  Identities=9%  Similarity=0.095  Sum_probs=81.6

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCC
Q 011720          270 FNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGN  349 (479)
Q Consensus       270 f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (479)
                      .+..+.++....+.++..++.++.|++.||  +|||+....+.....+.. ..    ..    +            .  +
T Consensus        40 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr--~G~r~~~~~~~~~~~~~~-~~----~~----~------------~--~   94 (412)
T TIGR02332        40 LSATMFGLAATLFYAAYVICGIPSNIMLAI--IGARRWIAGIMVLWGIAS-TA----TM----F------------A--T   94 (412)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhHHHHHHH--hChHHHHHHHHHHHHHHH-HH----HH----H------------h--c
Confidence            455567788788889999999999999999  789986655543321111 11    10    0            1  2


Q ss_pred             CchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          350 DFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       350 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      ++....+.-++.|++.+...+....++.|.+ |+++|+++.+++....++|..++..+.
T Consensus        95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~-~~~~rg~~~~~~~~~~~~g~~~~~~~~  152 (412)
T TIGR02332        95 GPESLYLLRILVGIAEAGFLPGILLYLTFWF-PAYFRARANALFMIAMPVTMALGLILS  152 (412)
T ss_pred             CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2344556667889998888887777889999 788999999999998888888876664

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.35  E-value=3.7e-06  Score=84.55  Aligned_cols=114  Identities=14%  Similarity=0.170  Sum_probs=84.1

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCC
Q 011720          270 FNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGN  349 (479)
Q Consensus       270 f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (479)
                      .+..+.++....+.++..++.++.|++.||  +|||+....+.....+.. ..    ..+                .  +
T Consensus        26 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~--~g~r~~~~~~~~~~~~~~-~~----~~~----------------~--~   80 (399)
T TIGR00893        26 LSAAQYGYVFSAFSWGYVVGQFPGGWLLDR--FGARKTLAVFIVIWGVFT-GL----QAF----------------A--G   80 (399)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHhHHHHHHh--cCcceeeHHHHHHHHHHH-HH----HHH----------------H--c
Confidence            355566788888999999999999999999  679987766644322111 11    100                1  2


Q ss_pred             CchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          350 DFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       350 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      ++....+..++.|++.+...+....++.|.+ |+++|+++.++.....++|..++..+..
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~  139 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWF-PASERATAVSIFNSAQGLGGIIGGPLVG  139 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhC-CHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            3445566677888888888887888899999 7889999999999999999888866553

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.34  E-value=1e-05  Score=84.30  Aligned_cols=111  Identities=14%  Similarity=0.134  Sum_probs=89.4

Q ss_pred             HHHHHHHHhhhhhhhhhhccchh--HHHhhhhHHHHHHHHHHHh---hh--ccCchhhHHHHHHHHhhhhhhhhhhhhhh
Q 011720           67 ALYTTFSVFGILGGGVYNIFGPR--VTLAAGCSTYVLYAGSFLY---YN--HHHDQTFAVVAGAVLGIGAGLLWAGQGAI  139 (479)
Q Consensus        67 ~~~~~~aig~l~~g~l~d~~Grk--~~l~ig~~~~~i~~~~~~~---~~--~~~~~~~li~~R~i~G~g~g~~~~~~~~~  139 (479)
                      +......+|+++.|++.||+|.|  +++.++.+.+.+.....+.   .+  ..++.+.+++..++.|+..|..++..-++
T Consensus       325 ~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~  404 (477)
T PF11700_consen  325 VVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSL  404 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            34455677889999999999999  8888888776442111111   00  13678889999999999999999999999


Q ss_pred             hhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhc
Q 011720          140 MTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYH  177 (479)
Q Consensus       140 i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~  177 (479)
                      .+|+.|+++.+..+|+|...-.....+||++...+...
T Consensus       405 ~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~  442 (477)
T PF11700_consen  405 FSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDA  442 (477)
T ss_pred             HHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999987766543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.32  E-value=7.6e-06  Score=83.00  Aligned_cols=116  Identities=12%  Similarity=0.079  Sum_probs=88.1

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhh
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQG  137 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~  137 (479)
                      +...+...+....+..++.++.+++.||+|||+.+.++.+...+.......  ..++.+.+.++.++.|+..+..++..+
T Consensus       273 ~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (405)
T TIGR00891       273 PHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFA--IGANVAVLGLGLFFQQMLVQGIWGILP  350 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHH--hCCchHHHHHHHHHHHHHHccchhhHH
Confidence            333444455566667788899999999999999998887654332122111  234566777777888887777777778


Q ss_pred             hhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          138 AIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       138 ~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      .++.|..|+++||+.+|+.+....+|..+|+.+...+.
T Consensus       351 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~  388 (405)
T TIGR00891       351 KHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLA  388 (405)
T ss_pred             HHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999887664

>PRK03699 putative transporter; Provisional

Probab=98.32  E-value=8.6e-06  Score=83.01  Aligned_cols=114  Identities=10%  Similarity=0.087  Sum_probs=83.4

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhh
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQG  137 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~  137 (479)
                      +...+...+....+..++.++.+.++||+|||+.+.....+..+.  ..+.. ..++.+.+.+..++.|++.+..++...
T Consensus       240 ~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~G~~~~~~~~~~~  316 (394)
T PRK03699        240 LEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVL--MYLFV-NTDDPSHLLYAILGLGFFSSAIYTTII  316 (394)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH--HHHHH-HcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            444455566677778899999999999999999888776654432  11211 245666677788889998887777766


Q ss_pred             hhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          138 AIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       138 ~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      .+..|..| +++++..+.......+|..+||.+...+.
T Consensus       317 ~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~  353 (394)
T PRK03699        317 TLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIV  353 (394)
T ss_pred             HHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            67777654 55778888888888999999998877664

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.31  E-value=1.1e-07  Score=100.37  Aligned_cols=60  Identities=17%  Similarity=0.262  Sum_probs=3.0

Q ss_pred             hhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          116 TFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       116 ~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      ..++++.++.|+|+...++...+|+.|..++++-+.++|++.+...+|+.+|.+++..+.
T Consensus       142 ~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L  201 (539)
T PF03137_consen  142 YVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCL  201 (539)
T ss_dssp             ----------SSS-----------------------------------------------
T ss_pred             HHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHH
Confidence            467999999999999999999999999999999999999999999999999988876543

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.31  E-value=6.5e-05  Score=78.99  Aligned_cols=135  Identities=13%  Similarity=-0.021  Sum_probs=86.6

Q ss_pred             HHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhc-cCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCC
Q 011720           67 ALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNH-HHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPT  145 (479)
Q Consensus        67 ~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~-~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~  145 (479)
                      ....+..++.+++|+++||+|||+.+.++.++..+....+..... .++.+.+.+.-++..+..|...++..++..++.+
T Consensus       267 ~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~  346 (491)
T PRK11010        267 LGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCN  346 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            334566788999999999999998887766544432222221111 2345555556666565566555566678888999


Q ss_pred             ccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhcc
Q 011720          146 ATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAIL  207 (479)
Q Consensus       146 ~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~  207 (479)
                      ++.+++..++.++...+|..+++.+...+..      ..+|. .|.+..++.+++.++..+++
T Consensus       347 ~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~------~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        347 KSFSATQFALLSALSAVGRVYVGPVAGWFVE------AHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998877766555432      13454 34444444555544444443

>PRK03545 putative arabinose transporter; Provisional

Probab=98.31  E-value=2.5e-05  Score=79.40  Aligned_cols=138  Identities=14%  Similarity=0.047  Sum_probs=89.3

Q ss_pred             hhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhh
Q 011720           59 TAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGA  138 (479)
Q Consensus        59 ~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~  138 (479)
                      .......+....+..++.++.+++.||+|||..+ ++..+..+  .........++.+.+++..++.|++.+...+....
T Consensus       241 ~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~--~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  317 (390)
T PRK03545        241 NFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLV--CLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQV  317 (390)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHH--HHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHH
Confidence            3344444455556677889999999999988754 44333222  11111112456778888999999998766555666


Q ss_pred             hhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhc
Q 011720          139 IMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAI  206 (479)
Q Consensus       139 ~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~  206 (479)
                      .+.+..| ++||+++|++....++|..+|+.+...+..+      .+++ .+.....+..++.++..+.
T Consensus       318 ~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~  379 (390)
T PRK03545        318 KVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH------LGLSSIGYVGAALALAALVWSILI  379 (390)
T ss_pred             HHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cChhHHHHHHHHHHHHHHHHHHHH
Confidence            7777755 6899999999999999999999987766421      3332 3344444445544444433

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.30  E-value=2e-05  Score=81.53  Aligned_cols=117  Identities=11%  Similarity=-0.030  Sum_probs=70.6

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhcc--c-hhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhh
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIF--G-PRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWA  134 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~--G-rk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~  134 (479)
                      +...+...+....+..++.+++|+++||+  + ||+......+...+........ ...+...+.+..+..|++......
T Consensus       278 ~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~  356 (434)
T PRK11663        278 LVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM-PFASYVMQAACFFTIGFFVFGPQM  356 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc-ccccHHHHHHHHHHHHHHHhhHHH
Confidence            33445556667777888999999999999  3 3333222211111111121111 122333334444444543322222


Q ss_pred             hhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          135 GQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       135 ~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      ....+..|..|+++||+.+|+.+...++|..+||.+...+.
T Consensus       357 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~  397 (434)
T PRK11663        357 LIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVL  397 (434)
T ss_pred             HHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHH
Confidence            33456779999999999999999999999999998876553

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.29  E-value=1e-05  Score=84.61  Aligned_cols=119  Identities=13%  Similarity=0.047  Sum_probs=89.0

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHH-hhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFL-YYNHHHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~-~~~~~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      ++...+........+..++.++++++.||+|||+.+.++.++..+...... ......+.+.++..-++.|+|.+...+.
T Consensus       289 s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~  368 (485)
T TIGR00711       289 TALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMP  368 (485)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555556666778889999999999999999888876655322222 1111234566777889999999988766


Q ss_pred             hhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          136 QGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       136 ~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      ......+..|+++||++.+++.....+|..+|+.+...+.
T Consensus       369 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~  408 (485)
T TIGR00711       369 LTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTIL  408 (485)
T ss_pred             HHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666677789999999999999999999999988876553

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.28  E-value=2.3e-05  Score=80.83  Aligned_cols=109  Identities=15%  Similarity=0.131  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCC
Q 011720           65 NTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYP  144 (479)
Q Consensus        65 ~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~  144 (479)
                      .++......++.++.++++||+|||+.+.++.++..+........  .++.+.+++..++.|++.+...+...++++|..
T Consensus       263 ~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  340 (437)
T TIGR00792       263 GSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA--GSNLPLILVLIILAGFGQNFVTGLVWALVADTV  340 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            344455566778899999999999999999887665532222221  245667788889999999988888888888876


Q ss_pred             C-------ccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          145 T-------ATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       145 ~-------~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      |       ++++|...|++.....+|..+|+.+...+.
T Consensus       341 ~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll  378 (437)
T TIGR00792       341 DYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLIL  378 (437)
T ss_pred             hhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5       556899999999999999999988776553

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.28  E-value=3.2e-05  Score=78.36  Aligned_cols=112  Identities=13%  Similarity=0.015  Sum_probs=84.0

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhh
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQG  137 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~  137 (479)
                      +...+...+.......++.++.+++.||+|||+.+.++.....+.....  .    +....+...++.|++.+...+...
T Consensus       234 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~--~----~~~~~~~~~~l~g~~~~~~~p~~~  307 (381)
T PRK03633        234 DASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAM--L----SQAAMAPALFILGAAGFTLYPVAM  307 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHH--h----hhHHHHHHHHHHHHHHHhHHHHHH
Confidence            3344444555666677888999999999999999988877665522221  1    123445677888888777777777


Q ss_pred             hhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          138 AIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       138 ~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      ..+.|..|+++++...+.+...+++|..+|+.+...+.
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~  345 (381)
T PRK03633        308 AWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLM  345 (381)
T ss_pred             HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88889999988898889988889999999999887663

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.27  E-value=6.7e-06  Score=82.02  Aligned_cols=112  Identities=13%  Similarity=0.024  Sum_probs=88.0

Q ss_pred             hhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccC-chhhHHHHHHHHhhhhhhhhhhhhh
Q 011720           60 AANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHH-DQTFAVVAGAVLGIGAGLLWAGQGA  138 (479)
Q Consensus        60 ~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~-~~~~li~~R~i~G~g~g~~~~~~~~  138 (479)
                      ..+...+....+..++.++.+.+.||+|||+.+..+..+..+.......   .+ +.+.+++..++.|++.+...+....
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~  324 (365)
T TIGR00900       248 HYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGL---TPPNFPLFLVLWFAIGVGYGPINVPQGT  324 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHh---hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555666777889999999999999988876554442222211   23 4778889999999999998888888


Q ss_pred             hhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhh
Q 011720          139 IMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIM  174 (479)
Q Consensus       139 ~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i  174 (479)
                      ++.|..|+++||+..|++.....+|..+|+.+...+
T Consensus       325 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l  360 (365)
T TIGR00900       325 LLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPL  360 (365)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999887655

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.26  E-value=1e-05  Score=85.25  Aligned_cols=118  Identities=14%  Similarity=0.092  Sum_probs=90.2

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      ++...+...........++.++.|.+.||+|||+.+..+.++..+............+.+..+..-++.|+|.|...+..
T Consensus       293 s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~  372 (495)
T PRK14995        293 SPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLAS  372 (495)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHH
Confidence            34444455555556677888999999999999999888877665533322222223455666778899999999988777


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhh
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIM  174 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i  174 (479)
                      ...+.+..|++++|...++++...++|..+|..+...+
T Consensus       373 ~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i  410 (495)
T PRK14995        373 TSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLL  410 (495)
T ss_pred             HHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777888999999999999999999999999887655

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.24  E-value=9.9e-06  Score=81.72  Aligned_cols=115  Identities=20%  Similarity=0.107  Sum_probs=82.7

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCC
Q 011720          269 MFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSG  348 (479)
Q Consensus       269 ~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (479)
                      +.+..+.++....+.++..++.++.|++.||  +|||+....+..... +....    ...               .   
T Consensus        36 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~--~g~r~~~~~~~~~~~-~~~~~----~~~---------------~---   90 (385)
T TIGR00710        36 STPASIVQMTLTLYLLGFAAGQLLWGPLSDR--YGRRPVLLLGLFIFA-LSSLG----LAL---------------S---   90 (385)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh--cCChHHHHHHHHHHH-HHHHH----HHH---------------H---
Confidence            3455567888888899999999999999999  689887665543321 11111    100               0   


Q ss_pred             CCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          349 NDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       349 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      +++.......++.|++.+...+....++.+.+ |+++|+++.++......++..++..+..
T Consensus        91 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~  150 (385)
T TIGR00710        91 NNIETLLVLRFVQAFGASAGSVISQALVRDIY-PGEELSRIYSILMPVLALAPAVAPLLGG  150 (385)
T ss_pred             ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22344555667788888888887888899999 7888999999999988888887766554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00897 2A0118 polyol permease family

Probab=98.23  E-value=3.6e-05  Score=78.64  Aligned_cols=136  Identities=16%  Similarity=0.137  Sum_probs=87.5

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhccchhHHHh-hhhHHHHHHHHHHH-hhh-ccCchhhHHHHHHHHhhhhhhhhhhhhhh
Q 011720           63 NANTALYTTFSVFGILGGGVYNIFGPRVTLA-AGCSTYVLYAGSFL-YYN-HHHDQTFAVVAGAVLGIGAGLLWAGQGAI  139 (479)
Q Consensus        63 ~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~-ig~~~~~i~~~~~~-~~~-~~~~~~~li~~R~i~G~g~g~~~~~~~~~  139 (479)
                      ...+....+..+++++.|.++||+|||+.+. .+.+...+...... ... ..++.+..++..++.|++.+...+. ...
T Consensus       261 ~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~  339 (402)
T TIGR00897       261 QIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPL-AAV  339 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            3445556677888999999999999988764 23222222111111 111 1245667788899999988875443 455


Q ss_pred             hhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccc-hhHHHHHHHHHHHHHHHHhc
Q 011720          140 MTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVND-KTYIAFMCFMSAGAALSLAI  206 (479)
Q Consensus       140 i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~-~~~~i~~~l~~l~~~l~~~~  206 (479)
                      +.|. +|++||+.+|+++....+|..+||.+...+...      .++ ..+++..++..++.++..|+
T Consensus       340 ~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~------~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       340 FPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF------FGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh------cchHHHHHHHHHHHHHHHHHHHHh
Confidence            6676 456899999999999999999999887655321      222 34444455555555554554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.21  E-value=5.6e-05  Score=79.63  Aligned_cols=108  Identities=13%  Similarity=0.054  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCC
Q 011720           65 NTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYP  144 (479)
Q Consensus        65 ~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~  144 (479)
                      .+..-.+..+|+++.+.+.+++++++.+..+.+++.+.   .+....+++.+..++.-++.|++.....+...+.+.+..
T Consensus       260 ~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~---~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~  336 (524)
T PF05977_consen  260 LAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALA---LLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSV  336 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHH---HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            33333444445566667778888888888887766552   222234578888888999999999998888888899999


Q ss_pred             CccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          145 TATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       145 ~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      |++.|||.++++.+....+..+|.++...+.
T Consensus       337 P~~~~GRv~si~~~~~~g~~~lGsll~G~la  367 (524)
T PF05977_consen  337 PDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA  367 (524)
T ss_pred             CHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998877664

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.19  E-value=4.9e-06  Score=70.50  Aligned_cols=103  Identities=19%  Similarity=0.111  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHH
Q 011720          281 FYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFS  360 (479)
Q Consensus       281 ~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (479)
                      .+.++.+++.++.+++.||  +|||+....+..... +....    ..    +.              .+........++
T Consensus         6 ~~~~~~~~~~~~~g~~~d~--~g~~~~~~~~~~~~~-~~~~~----~~----~~--------------~~~~~~~~~~~~   60 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDR--FGRKPVLLVGLFIFV-LSTAM----FA----LS--------------SNITVLIIARFL   60 (141)
T ss_pred             eehhHHHHHHhhHHHHHhh--cchhHHHHHHHHHHH-HHHHH----HH----Hh--------------ccHHHHHHHHHH
Confidence            4567788899999999999  678886555433221 11111    10    00              123344556677


Q ss_pred             HHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          361 YGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       361 ~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      .|+..+...+..+.++.|.. |+++|+++.++.+....++..++..+..
T Consensus        61 ~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~  108 (141)
T TIGR00880        61 QGFGAAFALVAGAALIADIY-PPEERGVALGLMSAGIALGPLLGPPLGG  108 (141)
T ss_pred             HHHHHHHHHHhHHHHHHHHC-ChhhhhHHHHHHHHhHHHHHHHhHHhHH
Confidence            88888888887888889999 7788999999999999999888877664

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.18  E-value=6.6e-05  Score=77.52  Aligned_cols=112  Identities=15%  Similarity=0.082  Sum_probs=63.6

Q ss_pred             hhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHh-hhccCchhhHHHHHHHHhhhhhhhhhhhhhh
Q 011720           61 ANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLY-YNHHHDQTFAVVAGAVLGIGAGLLWAGQGAI  139 (479)
Q Consensus        61 ~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~-~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~  139 (479)
                      .....++......+++++.|+++||+|||+.+.++.++..+....... .....+....+..-.+.++..+........+
T Consensus       281 ~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (432)
T PRK10406        281 ASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGIL  360 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444545555677788899999999999888776543332211111 1111222222222222333334433445677


Q ss_pred             hhcCCCccchHhHHHHHHHHHHh-hhhhhhHHHh
Q 011720          140 MTSYPTATRKGTYISLFWSIFNM-GGVVGGLIPF  172 (479)
Q Consensus       140 i~e~~~~~~RG~~~g~~~~~~~~-G~~iG~~i~~  172 (479)
                      ..|..|++.||..+|+.+..-+. .....+.+..
T Consensus       361 ~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~  394 (432)
T PRK10406        361 KAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL  394 (432)
T ss_pred             HHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH
Confidence            88999999999999998754332 2223555444

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.17  E-value=7.2e-06  Score=81.39  Aligned_cols=109  Identities=21%  Similarity=0.284  Sum_probs=85.1

Q ss_pred             hhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhh
Q 011720           60 AANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAI  139 (479)
Q Consensus        60 ~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~  139 (479)
                      ......++......++.++.+.+.||+|+|+.+.+......+...........++....+..-++.|++.+...+....+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  323 (352)
T PF07690_consen  244 QAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSL  323 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334555666666778999999999999888777777666544443332223455677778899999999999999999


Q ss_pred             hhcCCCccchHhHHHHHHHHHHhhhhhhh
Q 011720          140 MTSYPTATRKGTYISLFWSIFNMGGVVGG  168 (479)
Q Consensus       140 i~e~~~~~~RG~~~g~~~~~~~~G~~iG~  168 (479)
                      +.|..|+++||+..|++....++|..+||
T Consensus       324 ~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  324 IQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999886

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.15  E-value=3.8e-06  Score=84.17  Aligned_cols=110  Identities=13%  Similarity=0.079  Sum_probs=80.0

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCC
Q 011720          270 FNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGN  349 (479)
Q Consensus       270 f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (479)
                      .+..+.++......++..++.++.|++.||  +|||+....+.....+.. .+    ..+               .   .
T Consensus        27 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr--~g~r~~~~~~~~~~~~~~-~~----~~~---------------~---~   81 (379)
T TIGR00881        27 LSKTDLGLLLSSFSIAYGISKFVMGSVSDR--SNPRVFLPIGLILCAIVN-LF----FGF---------------S---T   81 (379)
T ss_pred             CCHhHHHHHHHHHHHHHHhhhhhhhHHHHh--hCCeehhHHHHHHHHHHH-HH----HHH---------------h---h
Confidence            455567788888899999999999999999  789987766654322111 11    100               0   2


Q ss_pred             CchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHh
Q 011720          350 DFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAW  405 (479)
Q Consensus       350 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~  405 (479)
                      ++....+..++.|++.+...+....++.+.+ ++++|+++.++......+|..++.
T Consensus        82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~  136 (379)
T TIGR00881        82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWF-SRSERGTWVSFWNCSHNVGGGLLP  136 (379)
T ss_pred             hHHHHHHHHHHHHhhccccCCchHHHHHHhc-CHhhheeeEeehhccchhHHHHHH
Confidence            2344556667778888877787888899999 778899999998888888887776

>PRK15075 citrate-proton symporter; Provisional

Probab=98.15  E-value=6.2e-05  Score=77.79  Aligned_cols=110  Identities=15%  Similarity=0.055  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHH-HHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcC
Q 011720           65 NTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAG-SFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSY  143 (479)
Q Consensus        65 ~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~-~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~  143 (479)
                      ......+..++++++|+++||+|||+.+.++.++..+... ........++...+....++.|++.+...+....++.|.
T Consensus       280 ~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~  359 (434)
T PRK15075        280 TLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEV  359 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            3344455567788999999999999998876544322111 111111123444455556667777777666666788999


Q ss_pred             CCccchHhHHHHHHHHH-HhhhhhhhHHHhhh
Q 011720          144 PTATRKGTYISLFWSIF-NMGGVVGGLIPFIM  174 (479)
Q Consensus       144 ~~~~~RG~~~g~~~~~~-~~G~~iG~~i~~~i  174 (479)
                      .|+++||+.+++.+... .++..++|.+...+
T Consensus       360 ~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i  391 (434)
T PRK15075        360 MPAEVRTAGFSLAYSLATAIFGGFTPAISTWL  391 (434)
T ss_pred             CCCCccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence            99999999999865433 33455677666544

>TIGR00901 2A0125 AmpG-related permease

Probab=98.15  E-value=1.7e-05  Score=79.39  Aligned_cols=91  Identities=13%  Similarity=0.096  Sum_probs=71.5

Q ss_pred             HHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhh-cc-------CchhhHHHHHHHHhhhhhhhhhhhhhhhhc
Q 011720           71 TFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYN-HH-------HDQTFAVVAGAVLGIGAGLLWAGQGAIMTS  142 (479)
Q Consensus        71 ~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~-~~-------~~~~~li~~R~i~G~g~g~~~~~~~~~i~e  142 (479)
                      ...++.++++++.||+|||+.+.++.++..+......... ..       ++.+.++...++.|++.+..++...+++.|
T Consensus       257 ~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  336 (356)
T TIGR00901       257 GAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSK  336 (356)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3457789999999999999998888876655333222211 11       245678888999999999999999999999


Q ss_pred             CCCccchHhHHHHHHHHHH
Q 011720          143 YPTATRKGTYISLFWSIFN  161 (479)
Q Consensus       143 ~~~~~~RG~~~g~~~~~~~  161 (479)
                      .+|+++||+.+|++++..+
T Consensus       337 ~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       337 LSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             hcCCCccHHHHHHHHHHHh
Confidence            9999999999999887654

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.14  E-value=4.3e-05  Score=79.42  Aligned_cols=138  Identities=12%  Similarity=-0.069  Sum_probs=75.5

Q ss_pred             hhhhHHHHHHHHHHHhhhhhhhhhhcc--chhHHH-hhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh
Q 011720           60 AANNANTALYTTFSVFGILGGGVYNIF--GPRVTL-AAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        60 ~~~~~~~~~~~~~aig~l~~g~l~d~~--Grk~~l-~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      ..+....+......++.+++|+++||+  |||+.. ++...+..+....+.. ...++.+..++.-++.|.+........
T Consensus       290 ~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~  368 (452)
T PRK11273        290 KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWL-NPAGNPTVDMACMIVIGFLIYGPVMLI  368 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHH-hcccChHHHHHHHHHHHHHHHhHHHHH
Confidence            333344444455566789999999999  555432 2222222221111111 112344444555555555433222233


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhh-hhhHHHhhhhhccCCcccccc-hhHHHHHHHHHHHHHHHH
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGV-VGGLIPFIMNYHRTDAESVND-KTYIAFMCFMSAGAALSL  204 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~-iG~~i~~~i~~~~~~~~~~~~-~~~~i~~~l~~l~~~l~~  204 (479)
                      ..+..|..|+++||+.+|+.....++|.. +|+.+...+..+      .+| ..|.+..++.+++++...
T Consensus       369 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~------~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        369 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF------FGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH------hcchHHHHHHHHHHHHHHHHHH
Confidence            45567999999999999999888777754 477766555322      223 234444444555544443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.12  E-value=3.6e-05  Score=79.63  Aligned_cols=116  Identities=16%  Similarity=0.043  Sum_probs=75.0

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCC
Q 011720          269 MFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSG  348 (479)
Q Consensus       269 ~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (479)
                      +.+..+.++....+.++..++.++.|++.||  +|||+....+.....+.. ..    ... .  +        . ..  
T Consensus        57 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr--~g~~~~~~~~~~~~~~~~-~~----~~~-~--~--------~-~~--  115 (438)
T TIGR00712        57 GFSKGELGFALSAISIAYGFSKFIMGSVSDR--SNPRVFLPAGLILSAAVM-LL----MGF-V--P--------W-AT--  115 (438)
T ss_pred             CCCHhHhHHHHHHHHHHHHHhhhccchhhhc--cCCceehHHHHHHHHHHH-HH----Hhc-c--c--------c-cc--
Confidence            4556667888888899999999999999999  678886655543321111 11    100 0  0        0 01  


Q ss_pred             CCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhh
Q 011720          349 NDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQ  406 (479)
Q Consensus       349 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~  406 (479)
                      .++.......++.|+..+...+.....+.+.+ |+++|+++.++++...+++..+...
T Consensus       116 ~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~-~~~~rg~~~~~~~~~~~~g~~~~~~  172 (438)
T TIGR00712       116 SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWW-SQSERGTIVSIWNCAHNIGGGIPPL  172 (438)
T ss_pred             chHHHHHHHHHHHHHHhhcchHHHHHHHHHhc-CcccchhHHHHHHHHHHhHhHHHHH
Confidence            22333344445566666655555666778888 7888999999998888877766543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.12  E-value=3.1e-05  Score=79.87  Aligned_cols=112  Identities=17%  Similarity=0.166  Sum_probs=89.2

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhh
Q 011720           62 NNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMT  141 (479)
Q Consensus        62 ~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~  141 (479)
                      +....+......++.++.++++||+|+|+++..+.+++.+........ ..+|.+.+++.-++.|++.+..++...++++
T Consensus       263 ~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~a  341 (428)
T PF13347_consen  263 SIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFL-GPGSPWLVLILFILAGIGYGAFFVIPWAMLA  341 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHH-HhhhHHHHHHHHHHhHhhhcccccccccccc
Confidence            333445566667778899999999999999999999887744443332 1258899999999999999999999999999


Q ss_pred             cCCC-------ccchHhHHHHHHHHHHhhhhhhhHHHhhh
Q 011720          142 SYPT-------ATRKGTYISLFWSIFNMGGVVGGLIPFIM  174 (479)
Q Consensus       142 e~~~-------~~~RG~~~g~~~~~~~~G~~iG~~i~~~i  174 (479)
                      |+.+       +++.|...|.+.....+|..+++.+...+
T Consensus       342 d~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~  381 (428)
T PF13347_consen  342 DVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL  381 (428)
T ss_pred             cchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence            9886       34468899999999999998888876654

>PRK10054 putative transporter; Provisional

Probab=98.10  E-value=5.6e-05  Score=77.14  Aligned_cols=97  Identities=16%  Similarity=0.191  Sum_probs=75.1

Q ss_pred             hhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccchHhHHHH
Q 011720           76 GILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISL  155 (479)
Q Consensus        76 ~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~RG~~~g~  155 (479)
                      .++.+.+.||.+||+.+.++..+..+........  .++.+.+++..++.|+|.+...+....++.+..|++.||+..+.
T Consensus       261 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~  338 (395)
T PRK10054        261 QYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS--GNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSA  338 (395)
T ss_pred             hhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc--chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhH
Confidence            4677889999999999988877665533222211  24567778889999999998888888899999999999999987


Q ss_pred             HHHHHHhhhhhhhHHHhhhh
Q 011720          156 FWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       156 ~~~~~~~G~~iG~~i~~~i~  175 (479)
                      .. ...+|..+|+.+...+.
T Consensus       339 ~~-~~~~G~~~Gp~~~G~l~  357 (395)
T PRK10054        339 QS-LGWLGAAINPLVSGVIL  357 (395)
T ss_pred             HH-HHHHHHHHHHHHHHHHH
Confidence            65 45578889998877664

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.10  E-value=1.9e-05  Score=79.62  Aligned_cols=113  Identities=17%  Similarity=0.102  Sum_probs=80.5

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCC
Q 011720          270 FNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGN  349 (479)
Q Consensus       270 f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (479)
                      .+..+.++....+.++..++.++.|++.||  +|||+....+.....+. ....    ..               .   +
T Consensus        23 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~--~g~~~~~~~~~~~~~i~-~~~~----~~---------------~---~   77 (377)
T PRK11102         23 VSAGSVQMTLSAYILGFAIGQLFYGPMADS--FGRKPVILGGTLVFALA-AVAC----AL---------------A---Q   77 (377)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhchHHhh--cCChHHHHHHHHHHHHH-HHHH----HH---------------H---c
Confidence            455566777778889999999999999999  67888766654432211 1111    00               0   1


Q ss_pred             CchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          350 DFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       350 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      ++....+..++.|++.+...+....++.+.+ ++++|+++.++......+|..++..+.
T Consensus        78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~  135 (377)
T PRK11102         78 TIDQLIYMRFLHGLAAAAASVVINALMRDMF-PKEEFSRMMSFVTLVMTIAPLLAPIIG  135 (377)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2334556667788888888787788899998 788899999999888888887776654

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.08  E-value=8.6e-05  Score=75.74  Aligned_cols=99  Identities=20%  Similarity=0.325  Sum_probs=78.1

Q ss_pred             hhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhH----HHHHHHHhhhhhhhhhhhhhhhhcCCCccchH
Q 011720           75 FGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFA----VVAGAVLGIGAGLLWAGQGAIMTSYPTATRKG  150 (479)
Q Consensus        75 g~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~l----i~~R~i~G~g~g~~~~~~~~~i~e~~~~~~RG  150 (479)
                      .-++.+.+..|+|.|+.+.++.+.+++=-..+..  .+++.+..    +.+-.++|+..+..+.+...|+.+.+|++.|+
T Consensus       259 ~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~--~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~a  336 (400)
T PF03825_consen  259 FFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAY--FSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRA  336 (400)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH--hcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchH
Confidence            3367899999999999999999987763222222  12344443    34456799999999999999999999999999


Q ss_pred             hHHHHHHHH-HHhhhhhhhHHHhhhh
Q 011720          151 TYISLFWSI-FNMGGVVGGLIPFIMN  175 (479)
Q Consensus       151 ~~~g~~~~~-~~~G~~iG~~i~~~i~  175 (479)
                      ++-+++... ..+|..+|+.++..+.
T Consensus       337 t~Q~l~~~~~~Glg~~iG~~igG~l~  362 (400)
T PF03825_consen  337 TAQGLYSALSFGLGGAIGSLIGGWLY  362 (400)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            999999875 5789999999888764

>PRK09848 glucuronide transporter; Provisional

Probab=98.06  E-value=0.00013  Score=75.76  Aligned_cols=103  Identities=22%  Similarity=0.169  Sum_probs=79.3

Q ss_pred             HHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCcc---
Q 011720           71 TFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTAT---  147 (479)
Q Consensus        71 ~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~---  147 (479)
                      ...++.++.+.+.||+|+|+.+.+|.++..+........ ...+.+.+++.-++.|+|.+...+...+..+|..|++   
T Consensus       276 ~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~  354 (448)
T PRK09848        276 GTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV-SVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYL  354 (448)
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence            345567889999999999999999987766532222221 1235677778889999999998888888888887654   


Q ss_pred             ----chHhHHHHHHHHHHhhhhhhhHHHhhh
Q 011720          148 ----RKGTYISLFWSIFNMGGVVGGLIPFIM  174 (479)
Q Consensus       148 ----~RG~~~g~~~~~~~~G~~iG~~i~~~i  174 (479)
                          ++|...|++.....+|..+|+.+...+
T Consensus       355 ~g~r~~G~~~~~~~~~~klg~aig~~i~g~~  385 (448)
T PRK09848        355 TGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI  385 (448)
T ss_pred             hCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                459999999999999999998876644

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.05  E-value=0.00019  Score=73.38  Aligned_cols=108  Identities=13%  Similarity=0.005  Sum_probs=77.7

Q ss_pred             HHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhh--hccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcC
Q 011720           66 TALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYY--NHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSY  143 (479)
Q Consensus        66 ~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~--~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~  143 (479)
                      .....+..++.++.+.+.||+|||+.+.++.+...+........  ...++.+.++++-++.|+|.+...+....... .
T Consensus       258 ~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~-~  336 (406)
T PRK15402        258 VPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTL-F  336 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHh-h
Confidence            34445566788999999999999999988877554422222111  01234566788899999999987655544443 3


Q ss_pred             CCccchHhHHHHHHHHHHhhhhhhhHHHhhh
Q 011720          144 PTATRKGTYISLFWSIFNMGGVVGGLIPFIM  174 (479)
Q Consensus       144 ~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i  174 (479)
                      .++++||+..+.+.....+|..+|+.+...+
T Consensus       337 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l  367 (406)
T PRK15402        337 SSDVSKGTVSAAMGMLSMLIFTVGIELSKHA  367 (406)
T ss_pred             hccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4568999999999999999999998877654

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.04  E-value=8.1e-05  Score=76.78  Aligned_cols=140  Identities=11%  Similarity=-0.011  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHh----hhccCchhh---HHHHHHHHhhhhhhh-hhhh
Q 011720           65 NTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLY----YNHHHDQTF---AVVAGAVLGIGAGLL-WAGQ  136 (479)
Q Consensus        65 ~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~----~~~~~~~~~---li~~R~i~G~g~g~~-~~~~  136 (479)
                      +...-....+..++++.+.||+|||+.++++..+..+....+..    .+..+ .|.   .+++-++-.++.+.- -+..
T Consensus       311 n~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~-~~~~y~~i~~~~~~~~~f~~G~gpi~  389 (485)
T KOG0569|consen  311 NLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG-SWLSYLCIAAIFLFIISFAIGPGPIP  389 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhhhcCCCchh
Confidence            33333444566788999999999999999997765443222211    11111 121   234444433333332 2344


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCcc
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSR  211 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~  211 (479)
                      .-+.+|+.|++.|..+.++-....-+...+=+..-..+..      .++-..++.|.+.+++..+...+.+||.|
T Consensus       390 ~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~------~~g~~~filF~i~~~~~~i~~~~~lPETk  458 (485)
T KOG0569|consen  390 WFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQN------VIGPYVFILFVIPLAIFLIYLYRYLPETK  458 (485)
T ss_pred             HHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhcchhhHHHHHHHHHHHHHHHHhCcccC
Confidence            5577899999999999998776665554433332222221      13334567777777776666667778765

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.04  E-value=0.00011  Score=74.79  Aligned_cols=111  Identities=11%  Similarity=-0.053  Sum_probs=82.1

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhh
Q 011720           62 NNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMT  141 (479)
Q Consensus        62 ~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~  141 (479)
                      +...++......++.++.+++.||+|||+.+.++.+++.+.....  . .++|.+.+++.++++|++.+........+..
T Consensus       257 g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~--~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  333 (396)
T TIGR00882       257 GYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGS--S-FATTALEVVILKMLHAFEVPFLLVGCFKYIT  333 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH--H-hcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555566677889999999999999999888766632221  1 3567888899999999998876655556777


Q ss_pred             cCCCccchHhHHHH-HHHHHHhhhhhhhHHHhhhh
Q 011720          142 SYPTATRKGTYISL-FWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       142 e~~~~~~RG~~~g~-~~~~~~~G~~iG~~i~~~i~  175 (479)
                      +..+++.|+...+. ++....+|..+|+.+...+.
T Consensus       334 ~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~  368 (396)
T TIGR00882       334 SQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMY  368 (396)
T ss_pred             HhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHH
Confidence            77777777776665 66788999999988877663

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.04  E-value=8.6e-06  Score=85.89  Aligned_cols=115  Identities=10%  Similarity=-0.062  Sum_probs=81.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchh
Q 011720          274 TRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAG  353 (479)
Q Consensus       274 ~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (479)
                      ..++......++.+++.++.|++.||  +|||+....+.....+.. .+.    .. .  .+.      . ..  .++..
T Consensus        57 ~~~~~~~~~~ig~~ig~~~~g~l~d~--~Grr~~~~~~~~~~~v~~-~~~----~~-~--~~~------~-~~--~~~~~  117 (502)
T TIGR00887        57 VSAAVNGSASIGTLAGQLFFGWLADK--LGRKRVYGMELIIMIIAT-VAS----GL-S--PGS------S-PK--SVMAT  117 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHH-HHH----HH-c--cCc------c-cc--hHHHH
Confidence            45677788899999999999999999  789997766544332111 111    11 0  100      0 00  12344


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          354 PFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       354 ~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      ..+.-++.|++.+...+....++.|.+ |+++|+++.++......+|.+++..+.
T Consensus       118 ~~~~r~l~G~~~g~~~~~~~~~~~e~~-p~~~Rg~~~~~~~~~~~~g~~~g~~~~  171 (502)
T TIGR00887       118 LCFWRFWLGVGIGGDYPLSAIITSEFA-TKKWRGAMMAAVFAMQGFGILAGAIVA  171 (502)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhc-ChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556667788888888888889999999 899999999999999988887776554

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.03  E-value=4.9e-05  Score=77.23  Aligned_cols=113  Identities=8%  Similarity=0.058  Sum_probs=77.7

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCC
Q 011720          270 FNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGN  349 (479)
Q Consensus       270 f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (479)
                      .+..+.++....+.++..++.++.|++.||  +|||+....+..... +....    ...                .  +
T Consensus        35 ~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr--~g~r~~l~~~~~~~~-i~~~~----~~~----------------~--~   89 (392)
T PRK10473         35 ASEAQLHIAFSVYLAGMAAAMLFAGKIADR--SGRKPVAIPGAALFI-IASLL----CSL----------------A--E   89 (392)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhHhHHHHH--hCChHHHHHHHHHHH-HHHHH----HHH----------------h--C
Confidence            344456677777888999999999999999  689887666543321 11111    100                0  1


Q ss_pred             CchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          350 DFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       350 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      +.....+..++.|+..+...+..+.++.+.+ |+++|+++.++.+...+++..++..+.
T Consensus        90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~i~~~~~~~i~  147 (392)
T PRK10473         90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTL-DDRRRAKVLSLLNGITCIIPVLAPVLG  147 (392)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2233445556778887777777888899999 789999999999888877776665544

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.00  E-value=3.8e-05  Score=76.51  Aligned_cols=105  Identities=12%  Similarity=0.189  Sum_probs=85.5

Q ss_pred             HHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccc
Q 011720           69 YTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATR  148 (479)
Q Consensus        69 ~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~  148 (479)
                      ...-.+|+++.|.+.||+|.|+++.++.+++.+  .+.... ......-+.+...+.|+..|..++..-.|.++..|+++
T Consensus       298 ~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~--~~~~~~-~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k  374 (438)
T COG2270         298 SVVAALGAIIAGFLDERFGSKPVLMIGLVILSI--AALYLI-FLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK  374 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhCCceeehHHHHHHHH--HHHHHH-HccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc
Confidence            344567899999999999999999999988776  222221 12334456777888999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhhhhhhhHHHhhhhh
Q 011720          149 KGTYISLFWSIFNMGGVVGGLIPFIMNY  176 (479)
Q Consensus       149 RG~~~g~~~~~~~~G~~iG~~i~~~i~~  176 (479)
                      -|+.+|+|...-..++.+||+.-..+..
T Consensus       375 ~~~fFglyaltgra~S~~gp~lv~v~t~  402 (438)
T COG2270         375 EGRFFGLYALTGRAASFLGPFLVAVITQ  402 (438)
T ss_pred             ccceeehhhhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999987665543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.98  E-value=0.00029  Score=72.15  Aligned_cols=147  Identities=19%  Similarity=0.139  Sum_probs=99.5

Q ss_pred             cccchhHHHHHHHHHHhhhhhhhhhh------hcCCCCCCCChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhh
Q 011720           22 RYNSPLVQVSLIGLVCFCCPGMFNAL------SGMGGGGQLDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAG   95 (479)
Q Consensus        22 ~~~~~~~~~~~~~~~~f~~~~~~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig   95 (479)
                      +.+|++....+..++.++.....++.      ..++.    ++......+........++.++.+++.+|+|+|+.+.++
T Consensus       233 ~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~----~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~  308 (467)
T COG2211         233 FKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGD----PELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIG  308 (467)
T ss_pred             HccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCC----hHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHH
Confidence            46677776666555554443222221      12221    122222333333343444578899999999999999999


Q ss_pred             hHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCC-------ccchHhHHHHHHHHHHhhhhhhh
Q 011720           96 CSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPT-------ATRKGTYISLFWSIFNMGGVVGG  168 (479)
Q Consensus        96 ~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~-------~~~RG~~~g~~~~~~~~G~~iG~  168 (479)
                      .+++++.....+.. ..++.+++++..++.++|.+..++...+.++|..+       .+.-|...+.+..+.-+|..+|.
T Consensus       309 ~~~~~i~~~~~~f~-~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~  387 (467)
T COG2211         309 LLLLAVGYLLLYFT-PAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAG  387 (467)
T ss_pred             HHHHHHHHHHHHhh-cCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHH
Confidence            99888855555443 25678999999999999999998888888888765       44457778888888888888887


Q ss_pred             HHHhh
Q 011720          169 LIPFI  173 (479)
Q Consensus       169 ~i~~~  173 (479)
                      .+...
T Consensus       388 ~~~g~  392 (467)
T COG2211         388 FIPGW  392 (467)
T ss_pred             HHHHH
Confidence            65543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.98  E-value=0.00011  Score=75.00  Aligned_cols=96  Identities=15%  Similarity=0.030  Sum_probs=71.4

Q ss_pred             hhhhhh-hccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccchHhHHHHH
Q 011720           78 LGGGVY-NIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLF  156 (479)
Q Consensus        78 ~~g~l~-d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~RG~~~g~~  156 (479)
                      ..+... ||++.|+.+..+.++..+...  ... .+++.+.+++..++.|+|.+...+...+++.|..|+++||+.+|++
T Consensus       262 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~--~l~-~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~  338 (400)
T PRK11646        262 PIARWSEKRFRLEHRLMAGLLIMSLSMF--PIG-MVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFS  338 (400)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHHH--HHH-HhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHH
Confidence            334444 556666666666665544221  221 2456777777888899999888788888999999999999999999


Q ss_pred             HHHHHhhhhhhhHHHhhhhh
Q 011720          157 WSIFNMGGVVGGLIPFIMNY  176 (479)
Q Consensus       157 ~~~~~~G~~iG~~i~~~i~~  176 (479)
                      .....+|..+|+.+...+..
T Consensus       339 ~~~~~~g~~ig~~l~G~l~~  358 (400)
T PRK11646        339 RLGLALGGAIGYIGGGWLFD  358 (400)
T ss_pred             HHHHHHHHHhcccchHHHHH
Confidence            99999999999998876643

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.95  E-value=9e-05  Score=86.10  Aligned_cols=112  Identities=13%  Similarity=0.031  Sum_probs=87.5

Q ss_pred             hhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhh
Q 011720           60 AANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAI  139 (479)
Q Consensus        60 ~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~  139 (479)
                      ..+...+....+..++.++++.+.||+++|+.+.++.++..+....+.   ...+.+.+++.-++.|++.+...+...++
T Consensus       270 ~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  346 (1146)
T PRK08633        270 QVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLP---TAPSLASVLVLFFLFGFSAGLFIVPLNAL  346 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            334445555566677889999999999999988888776655222222   23467788888999999999988888889


Q ss_pred             hhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhh
Q 011720          140 MTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIM  174 (479)
Q Consensus       140 i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i  174 (479)
                      +.+..|++.||+.+|+..+...+|..+++.++..+
T Consensus       347 ~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l  381 (1146)
T PRK08633        347 IQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLF  381 (1146)
T ss_pred             HhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988887776544

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.93  E-value=7.1e-05  Score=74.98  Aligned_cols=114  Identities=15%  Similarity=0.065  Sum_probs=78.4

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCC
Q 011720          269 MFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSG  348 (479)
Q Consensus       269 ~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (479)
                      +.+..+.++....+.++..++.++.|++.||  +|||+..+.+.....+.. ..    ..+                .  
T Consensus        33 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr--~g~r~~~~~~~~~~~i~~-~~----~~~----------------~--   87 (366)
T TIGR00886        33 GLSTAQLGNLVAVPVLAGAVLRIILGFLVDK--FGPRYTTTLSLLLLAIPC-LW----AGL----------------A--   87 (366)
T ss_pred             CCCHHHhhHhhHHHHHHHHHHHHHHHHHHHH--hCchHHHHHHHHHHHHHH-HH----HHH----------------H--
Confidence            3455567788888899999999999999999  789987766654432111 11    100                0  


Q ss_pred             C-CchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          349 N-DFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       349 ~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      + ++....+..++.|+..+.+.+ ...++++.+ ++++|+++.+++....++|..++..+.+
T Consensus        88 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~~  147 (366)
T TIGR00886        88 VQSYSVLLLLRLFIGIAGGSFAS-CMPWISFFF-PKKIQGTALGLAAGWGNMGGGVAQFVMP  147 (366)
T ss_pred             hhhHHHHHHHHHHHHHhchhhHh-HHHHHHHhc-CHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence            1 334445556667777655543 566788888 7889999999998888888887766654

>PRK09669 putative symporter YagG; Provisional

Probab=97.93  E-value=0.00017  Score=74.75  Aligned_cols=104  Identities=10%  Similarity=0.062  Sum_probs=77.2

Q ss_pred             HHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCC----
Q 011720           70 TTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPT----  145 (479)
Q Consensus        70 ~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~----  145 (479)
                      ....++.+++++++||+|+|+.+.++.++..+........ ..++.+.+++..++.|++.+...+...+.++|..|    
T Consensus       275 i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~  353 (444)
T PRK09669        275 IAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI-PPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEK  353 (444)
T ss_pred             HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            3344566889999999999999998877655422222221 13567778888999999999998888889988875    


Q ss_pred             ---ccchHhHHHHHHHHHHhhhhhhhHHHhhh
Q 011720          146 ---ATRKGTYISLFWSIFNMGGVVGGLIPFIM  174 (479)
Q Consensus       146 ---~~~RG~~~g~~~~~~~~G~~iG~~i~~~i  174 (479)
                         ++..|...+.+.....+|..+|+.+...+
T Consensus       354 ~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l  385 (444)
T PRK09669        354 RSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI  385 (444)
T ss_pred             hcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               23346678888888899999988877654

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.92  E-value=0.00013  Score=76.53  Aligned_cols=146  Identities=15%  Similarity=0.019  Sum_probs=79.6

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHH----HhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhh
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIFGPRVT----LAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLW  133 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~----l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~  133 (479)
                      +...+...++...+..++.+++|+++||+|||+.    ..+..+...+.....+.....++.+..++.-++.|++.+...
T Consensus       287 ~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  366 (476)
T PLN00028        287 LETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAAC  366 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhh
Confidence            4444555666677778899999999999997621    111111111111111111123445555555566666655544


Q ss_pred             hhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCcc
Q 011720          134 AGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSR  211 (479)
Q Consensus       134 ~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~  211 (479)
                      .....++.+. .+++||...|+......+|+.+++++.. ..      ...+|. .+.+..++.+++.++.++.+.|.+
T Consensus       367 ~~~~~~~~~~-~~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~------~~~~y~~~f~~~~~~~~i~~~~~~~~~~~~~  437 (476)
T PLN00028        367 GATFGIVPFV-SRRSLGVISGLTGAGGNVGAVLTQLLFF-TG------SSYSTETGISLMGVMIIACTLPVAFIHFPQW  437 (476)
T ss_pred             hhhcccCccc-ChhhchhhhhhhhccccHHHHHHHHHHH-hc------CCccHhhHHHHHHHHHHHHHHHHHheeccch
Confidence            4444555565 4578999999986666666666665421 10      112232 344445555666555556554443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=97.90  E-value=0.00032  Score=70.37  Aligned_cols=114  Identities=18%  Similarity=0.129  Sum_probs=78.1

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhh
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQG  137 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~  137 (479)
                      .+..+..+-++=.+..+|++++|.+.|| +.|+++........+-...+..  ..++.+..++.-++.|++.+.....-.
T Consensus       246 ~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~--~~~~~~~~~~~~~~wg~a~~~~~~~~~  322 (394)
T COG2814         246 VSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTF--TGASPALALALLFLWGFAFSPALQGLQ  322 (394)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHhhhhhhHHH
Confidence            3344444434444557788999999999 8888888886655542222222  245566667777777777666433333


Q ss_pred             hhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          138 AIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       138 ~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      .-+++ ..|+.++...+++...+|+|..+|.+++..+.
T Consensus       323 ~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~  359 (394)
T COG2814         323 TRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVL  359 (394)
T ss_pred             HHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344 33789999999999999999999999988664

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.89  E-value=0.00021  Score=74.24  Aligned_cols=158  Identities=15%  Similarity=0.094  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHhhhhhhccc---cccc-cccccchhhhHHHHHHHHHHHHHHHHhhhhccc--cccCccceeeehhhhhH
Q 011720          243 KMLLLFPAAWASNFFYSYQF---NNVN-GLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDF--SFQSLRTRGLVGIGIVA  316 (479)
Q Consensus       243 r~ll~~~~~~~~~~~~s~~~---~~~~-~~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr--~~~gRr~~~~~g~~~~~  316 (479)
                      |++.+....+..|+.++.+.   +.+. ..+.+....++......+..++..++.|.++||  .|+|||+..+.+.....
T Consensus         5 ~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~   84 (477)
T TIGR01301         5 KLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALV   84 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHH
Confidence            44444444444454333221   1222 123455566777778888999999999999996  24799998776422221


Q ss_pred             HHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCch--hHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhh--hHHHHH
Q 011720          317 LFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFA--GPFVLYFSYGLLDAMFQSMVYWVIGALADDSETL--SRYTGF  392 (479)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r--~~~~~~  392 (479)
                      .+.+.+.    .+....... -.+..+ ..+ ....  .....+.+..+.....++...++++++. |+++|  ..+.+.
T Consensus        85 ~~~l~ll----~~~~~~~~~-~~~~~~-~~~-~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~-p~~~~~~~~a~~~  156 (477)
T TIGR01301        85 AFAVILI----GFAADIGHL-FGDNLD-KKT-KPRAIIVFVVGFWILDVANNMLQGPCRAFLADLT-GGDARRTRIANAY  156 (477)
T ss_pred             HHHHHHH----HhCchhhhh-cccccc-ccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CchhHHHHHHHHH
Confidence            1221111    110100000 000000 000 1111  1111222233344445555667889998 44433  578898


Q ss_pred             HHHHHHHHHHHHhhhc
Q 011720          393 YKGVQSAGAAVAWQVD  408 (479)
Q Consensus       393 ~~~~~~~g~~i~~~~~  408 (479)
                      .+...++|+.+++.+.
T Consensus       157 ~~~~~~lG~ilg~~~g  172 (477)
T TIGR01301       157 FSFFMAIGNVLGYAAG  172 (477)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888999999988755

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.88  E-value=0.00013  Score=74.20  Aligned_cols=113  Identities=14%  Similarity=-0.034  Sum_probs=73.0

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCC
Q 011720          269 MFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSG  348 (479)
Q Consensus       269 ~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (479)
                      +.+..+.++....+.++..++.++.|++.||  +|||+....+.....+.. ..    ...                .  
T Consensus        39 ~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr--~grr~~~~~~~~~~~~~~-~~----~~~----------------~--   93 (394)
T PRK11652         39 NVREGAVQAVMAAYLLTYGLSQLFYGPLSDR--VGRRPVILVGMSIFILGT-LV----ALF----------------A--   93 (394)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh--cCChHHHHHHHHHHHHHH-HH----HHH----------------H--
Confidence            3455567777778899999999999999999  789887665543321111 11    000                0  


Q ss_pred             CCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhh
Q 011720          349 NDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQV  407 (479)
Q Consensus       349 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~  407 (479)
                      +++....+..++.|++.+...+....++.+.+ +.++++++.+..+....++..++..+
T Consensus        94 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~i  151 (394)
T PRK11652         94 HSLTVLIAASAIQGLGTGVGGVMARTLPRDLY-EGTQLRHANSLLNMGILVSPLLAPLI  151 (394)
T ss_pred             ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22334455566777777666666666777877 56778888877766666655555443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=97.87  E-value=5.3e-05  Score=73.96  Aligned_cols=94  Identities=12%  Similarity=0.096  Sum_probs=74.3

Q ss_pred             HhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCch--hhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccchHh
Q 011720           74 VFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQ--TFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGT  151 (479)
Q Consensus        74 ig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~--~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~RG~  151 (479)
                      -|.++.+.+.||+|||++|....+++.++....... ...|.  ..+..+|++.-.+.    .+...|.-|..|.+.|+.
T Consensus       396 PGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c-~~rn~~tvllf~arafisg~f----qvaYvYtPEVyPTavRat  470 (528)
T KOG0253|consen  396 PGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTC-KTRNAYTVLLFTARAFISGAF----QVAYVYTPEVYPTAVRAT  470 (528)
T ss_pred             CchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh-cCcchhHHHHHHHHHHHhchh----eEEEEecCcccchhhhhc
Confidence            356899999999999999999999998876554432 23343  34567787754333    456678889999999999


Q ss_pred             HHHHHHHHHHhhhhhhhHHHh
Q 011720          152 YISLFWSIFNMGGVVGGLIPF  172 (479)
Q Consensus       152 ~~g~~~~~~~~G~~iG~~i~~  172 (479)
                      ..|.-..+..+|.++.|.|+.
T Consensus       471 gvGtcSsmaRIggI~~p~iA~  491 (528)
T KOG0253|consen  471 GVGTCSSMARIGGIFSPVIAM  491 (528)
T ss_pred             chhhhhhHHhhhhhhhhHHHH
Confidence            999999999999999999983

>TIGR00788 fbt folate/biopterin transporter

Probab=97.86  E-value=0.00019  Score=74.90  Aligned_cols=119  Identities=14%  Similarity=0.083  Sum_probs=89.1

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHH-hh---h---ccCchhhHHHHHHHHhhhhh
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFL-YY---N---HHHDQTFAVVAGAVLGIGAG  130 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~-~~---~---~~~~~~~li~~R~i~G~g~g  130 (479)
                      +...+...+..-.+..++..+.+.+.+|++.|+.+.++.+++.+...... ..   +   ..++.+..+..-++.+++.+
T Consensus       287 ~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g  366 (468)
T TIGR00788       287 PSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQ  366 (468)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHH
Confidence            44444444444455566777888888999999999999988776221111 00   0   01334466778899999999


Q ss_pred             hhhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhh
Q 011720          131 LLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNY  176 (479)
Q Consensus       131 ~~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~  176 (479)
                      +.+.....++++.+|++++|...+++.+..++|..+|+.++..+..
T Consensus       367 ~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~  412 (468)
T TIGR00788       367 LKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLME  412 (468)
T ss_pred             HHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988889999999999999999999999999999999988776653

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.86  E-value=0.00051  Score=69.78  Aligned_cols=105  Identities=13%  Similarity=0.011  Sum_probs=72.0

Q ss_pred             HHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHh-hh--ccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCc-
Q 011720           71 TFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLY-YN--HHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTA-  146 (479)
Q Consensus        71 ~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~-~~--~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~-  146 (479)
                      ...++.+++|++.||+|+|+.+.++.++..+....... ..  ...+...++..-.+.+++.|...++......+..++ 
T Consensus       256 ~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  335 (390)
T TIGR02718       256 TVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDG  335 (390)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            34556789999999999999998876654221111111 11  012334445555666677777666666666666655 


Q ss_pred             cchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          147 TRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       147 ~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      +++|+.++++++..++|..+|+.++..+.
T Consensus       336 ~~~g~~~~~~~~~~~lg~~~g~~~~G~l~  364 (390)
T TIGR02718       336 DQAGTDVTAVQSTRDLGELIASSIAGYLT  364 (390)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999987663

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.85  E-value=0.028  Score=56.85  Aligned_cols=131  Identities=10%  Similarity=0.014  Sum_probs=91.5

Q ss_pred             HHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccchHhH
Q 011720           73 SVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTY  152 (479)
Q Consensus        73 aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~RG~~  152 (479)
                      -..-++...+.|.+|.|++++++++..++--..++.   .++...+-+.-++-|++.+.. ++-.+|+-...|+++=-|.
T Consensus        55 l~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~---~~sv~~mq~~q~~yg~~~a~e-vay~sYiys~v~~~~yq~v  130 (412)
T PF01770_consen   55 LAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLF---GTSVLAMQLMQFFYGLATAAE-VAYYSYIYSVVDKEHYQKV  130 (412)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH---HCcHHHHHHHHHHHHHHHHHH-HHHHHHheeecCHHHHHHH
Confidence            334567888999999999999999987663333333   478999999999999988875 3555666666788888889


Q ss_pred             HHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCcc
Q 011720          153 ISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSR  211 (479)
Q Consensus       153 ~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~  211 (479)
                      .+.--+...+|-.+|++++-.+...    +..+.. +..+....+.++.++.++++++++
T Consensus       131 ts~~raa~l~g~~~s~~lgQllvs~----~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~  186 (412)
T PF01770_consen  131 TSYTRAATLVGRFISSLLGQLLVSF----GGVSYFQLNYISLASVSLALLIALFLPMPKR  186 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            9988888888888888887755321    122222 223334445666666677655543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.82  E-value=0.00034  Score=71.45  Aligned_cols=101  Identities=15%  Similarity=0.017  Sum_probs=61.2

Q ss_pred             HHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhc-cCchhhHHHHH----HHHhhhhhhhhhhhhhhhhcCC
Q 011720           70 TTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNH-HHDQTFAVVAG----AVLGIGAGLLWAGQGAIMTSYP  144 (479)
Q Consensus        70 ~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~-~~~~~~li~~R----~i~G~g~g~~~~~~~~~i~e~~  144 (479)
                      ....++.++++.+.||+|||+.+.++.++..+....+..... .++.+.+++.-    +..|++.+...+....++.+..
T Consensus       257 ~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  336 (402)
T PRK11902        257 AATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSF  336 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            345678899999999999999888777655443222222111 23455554444    4566666666666777777776


Q ss_pred             CccchHhHHHHHHHHHHhhhhhhhHHHhhh
Q 011720          145 TATRKGTYISLFWSIFNMGGVVGGLIPFIM  174 (479)
Q Consensus       145 ~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i  174 (479)
                      |.++++.    +.....+|..+++.++..+
T Consensus       337 ~~~~~~~----~~~~~~l~~~~~~~~~G~l  362 (402)
T PRK11902        337 SATQYAL----LSALASVGRVYVGPTSGYL  362 (402)
T ss_pred             cHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            7665544    4444456665555554444

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.81  E-value=0.00014  Score=74.68  Aligned_cols=113  Identities=10%  Similarity=0.030  Sum_probs=74.2

Q ss_pred             cchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCC
Q 011720          271 NLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGND  350 (479)
Q Consensus       271 ~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (479)
                      +....+.....+.++..++.++.|.++||  +|||+....+..... +.....    ..               .   .+
T Consensus        49 ~~~~~~~~~s~~~~~~~~~~~~~G~l~dr--~Grr~~l~~~~~~~~-~~~~~~----~~---------------a---~~  103 (413)
T PRK15403         49 DVSLAPASVSLYLAGGMALQWLLGPLSDR--IGRRPVLITGALIFT-LACAAT----LF---------------T---TS  103 (413)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhhHHHHH--cCchHHHHHHHHHHH-HHHHHH----HH---------------c---CC
Confidence            33444555566778888999999999999  789987666543321 111110    00               1   22


Q ss_pred             chhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          351 FAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       351 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      +....+.-++.|+..+...+..+.++.+.+ +.++++++.++......++..++..+..
T Consensus       104 ~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~lg~  161 (413)
T PRK15403        104 MTQFLIARFIQGTSICFIATVGYVTVQEAF-GQTKGIKLMAIITSIVLVAPIIGPLSGA  161 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445556677776655565667788888 6778899999988888888888766654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.81  E-value=4e-05  Score=76.32  Aligned_cols=146  Identities=13%  Similarity=0.169  Sum_probs=95.2

Q ss_pred             HHhhchHHHHHHHHHH-Hhhhh-----hhcccccccccc-ccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceee
Q 011720          237 KLFRNWKMLLLFPAAW-ASNFF-----YSYQFNNVNGLM-FNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGL  309 (479)
Q Consensus       237 ~~~~~~r~ll~~~~~~-~~~~~-----~s~~~~~~~~~~-f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~  309 (479)
                      +..+++|+.+...+++ +..++     ++...+.+...+ ++..+.++....+.+..-++-.+.|.++||  .+.|...-
T Consensus        21 ~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr--~npr~fm~   98 (448)
T COG2271          21 KTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDR--SNPRYFMA   98 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc--CCCceeeh
Confidence            4455566655544433 33331     122223443333 677777777666777777777888999999  44555444


Q ss_pred             ehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHH
Q 011720          310 VGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRY  389 (479)
Q Consensus       310 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~  389 (479)
                      .|+....++ .+++                   +. .  ++.....++.++.|.+++.--|.+.-.+..-+ +.++|++.
T Consensus        99 ~gLilsai~-nil~-------------------Gf-s--~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wf-sr~eRG~~  154 (448)
T COG2271          99 FGLILSAIV-NILF-------------------GF-S--PSLFLFAVLWVLNGWFQGMGWPPCARTITHWF-SRKERGTW  154 (448)
T ss_pred             HHHHHHHHH-HHHH-------------------hh-h--hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHc-CccccCce
Confidence            443322111 1111                   11 1  34566777888899998888888888899999 78899999


Q ss_pred             HHHHHHHHHHHHHHHhhhc
Q 011720          390 TGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       390 ~~~~~~~~~~g~~i~~~~~  408 (479)
                      .++.+..+++|.++...+.
T Consensus       155 ~siWn~shNiGGal~~~~~  173 (448)
T COG2271         155 WSIWNTSHNIGGALAPLVA  173 (448)
T ss_pred             EEEehhhhhcccchHHHHH
Confidence            9999999999999887665

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.80  E-value=0.00026  Score=72.61  Aligned_cols=117  Identities=14%  Similarity=0.150  Sum_probs=85.1

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCC
Q 011720          270 FNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGN  349 (479)
Q Consensus       270 f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (479)
                      .+..+.++....+.++..++++..|++.||  +|||+....+...+.+ ...+..    . .  .          ..  .
T Consensus        35 ~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r--~G~r~~~~~g~~l~~~-g~~l~~----~-~--~----------~~--~   92 (410)
T TIGR00885        35 LTAFQAALVQSAFYGGYFIMAIPAAIFMKK--LSYKAGILLGLFLYAL-GAFLFW----P-A--A----------EI--M   92 (410)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCchHHHHHHHHHHHH-HHHHHH----H-H--H----------hh--c
Confidence            345567888888999999999999999999  7899977776544321 111110    0 0  0          11  2


Q ss_pred             CchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          350 DFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       350 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      ++.......++.|++.+..++....++.++. ++++|++..++.+..+++|..++..+.+
T Consensus        93 ~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lG~~~g~~i~~  151 (410)
T TIGR00885        93 NYTLFLVGLFILTAGLGFLETAANPYILVMG-PESTATRRLNLAQSFNPFGSIIGMVVAQ  151 (410)
T ss_pred             cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHC-CHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555566667788888888887777888887 7788899999999999999998877653

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.79  E-value=0.00019  Score=68.57  Aligned_cols=115  Identities=17%  Similarity=0.234  Sum_probs=87.0

Q ss_pred             hhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhh
Q 011720           60 AANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAI  139 (479)
Q Consensus        60 ~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~  139 (479)
                      ......+.......++.++.|.+.||+|||+.+..+...+.+......... .++.+.+++.|++.|++.+...+....+
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~  118 (338)
T COG0477          40 LYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP-NVGLALLLILRLLQGLGGGGLLPVASAL  118 (338)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            344556666677777779999999999999888888765333211111111 1347889999999999999998999999


Q ss_pred             hhcCCCc-cchHhHHHHHHH-HHHhhhhhhhHHHhhhh
Q 011720          140 MTSYPTA-TRKGTYISLFWS-IFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       140 i~e~~~~-~~RG~~~g~~~~-~~~~G~~iG~~i~~~i~  175 (479)
                      +.|..|+ ++|+...+.... ...+|.++++.+...+.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (338)
T COG0477         119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLL  156 (338)
T ss_pred             HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999887 789999999888 57888888886665543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.79  E-value=0.00033  Score=73.27  Aligned_cols=105  Identities=20%  Similarity=0.218  Sum_probs=77.3

Q ss_pred             HHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhh--hccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCC--
Q 011720           70 TTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYY--NHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPT--  145 (479)
Q Consensus        70 ~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~--~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~--  145 (479)
                      ....++.++.++++||+|+|+.+.++.++.++........  ...++.+.+++.-++.|++.+..++...++++|..|  
T Consensus       277 i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~  356 (473)
T PRK10429        277 AANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYG  356 (473)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            4445667889999999999999988877655432222211  113456677788889999999999888899999866  


Q ss_pred             -----ccchHhHHHHHHHHHHhhhhhhhHHHhhh
Q 011720          146 -----ATRKGTYISLFWSIFNMGGVVGGLIPFIM  174 (479)
Q Consensus       146 -----~~~RG~~~g~~~~~~~~G~~iG~~i~~~i  174 (479)
                           .+..|..+|.+.....+|..+|+.+...+
T Consensus       357 e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~  390 (473)
T PRK10429        357 EYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV  390 (473)
T ss_pred             hHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 33345688999988899998888776544

>TIGR00896 CynX cyanate transporter

Probab=97.78  E-value=0.00031  Score=70.36  Aligned_cols=115  Identities=13%  Similarity=0.073  Sum_probs=78.5

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhcc-chhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIF-GPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~-Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      ++...+...+....+..+++++.|++.||+ +||+.+.++.++..+.......   ..+.+... .-++.|++.|...+.
T Consensus       230 ~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~l~g~~~g~~~~~  305 (355)
T TIGR00896       230 SAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLF---APMHGLWA-WALVLGLGQGGAFPL  305 (355)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH---hhhhHHHH-HHHHHHHhhhhHhHH
Confidence            344555566677777888999999999999 5677777766655543222221   12222222 457789999888776


Q ss_pred             hhhhhh-cCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          136 QGAIMT-SYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       136 ~~~~i~-e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      ....+. +..+++++|...++.+....+|..+||.+...+.
T Consensus       306 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~  346 (355)
T TIGR00896       306 ALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLH  346 (355)
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            656555 4445677899999988888888888988776553

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11043 putative transporter; Provisional

Probab=97.78  E-value=0.00099  Score=67.88  Aligned_cols=108  Identities=11%  Similarity=-0.012  Sum_probs=72.6

Q ss_pred             HHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhh--ccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcC
Q 011720           66 TALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYN--HHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSY  143 (479)
Q Consensus        66 ~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~--~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~  143 (479)
                      .....+..++.++.+.+.||+|||+.+..+.+...+.........  ..++.+.+++.-.+.|++.+...+.......|.
T Consensus       245 ~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (401)
T PRK11043        245 VPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRP  324 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            333445667788889999999999876655544333222221111  123455556667788888888777766666666


Q ss_pred             CCccchHhHHHHHHHHHHhhhhhhhHHHhhh
Q 011720          144 PTATRKGTYISLFWSIFNMGGVVGGLIPFIM  174 (479)
Q Consensus       144 ~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i  174 (479)
                      . |++||+..|++......+...++.+...+
T Consensus       325 ~-~~~~g~~~g~~~~~~~~~~~~~~~~~g~l  354 (401)
T PRK11043        325 F-PQATGKAAALQNTLQLGLCFLASLLVSAL  354 (401)
T ss_pred             C-cccChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            5 56899999999988777777777766555

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.78  E-value=0.00041  Score=70.72  Aligned_cols=113  Identities=12%  Similarity=-0.026  Sum_probs=81.7

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhh
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQG  137 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~  137 (479)
                      +...+...+....+..+++++.+.+.||.++|+.+..+... .+  ...... ..++.+..++.-++.|++.+...+...
T Consensus       240 ~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~--~~~~~~-~~~~~~~~~~~~~~~G~~~g~~~~~~~  315 (393)
T PRK11195        240 LNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GL--VVLLMA-LQHSLLPAYPLLILIGALGGFFVVPMN  315 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HH--HHHHHH-HHhHHHHHHHHHHHHHHhhhhhhhhHH
Confidence            34444555566666777888999999999999888777532 22  111111 234566677788899999998777677


Q ss_pred             hhhhcCCCccc-hHhHHHHHHHHHHhhhhhhhHHHhhh
Q 011720          138 AIMTSYPTATR-KGTYISLFWSIFNMGGVVGGLIPFIM  174 (479)
Q Consensus       138 ~~i~e~~~~~~-RG~~~g~~~~~~~~G~~iG~~i~~~i  174 (479)
                      +.+.+..|++. +|+..++.+...++|..+|..+...+
T Consensus       316 ~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~  353 (393)
T PRK11195        316 ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL  353 (393)
T ss_pred             HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence            77778766655 79999999999999999998877644

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.76  E-value=0.00036  Score=70.65  Aligned_cols=137  Identities=9%  Similarity=-0.032  Sum_probs=94.8

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhc
Q 011720           63 NANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTS  142 (479)
Q Consensus        63 ~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e  142 (479)
                      ..+++-...-++.-.+++.+.+|+|.|+.++++.++..+=....   +.+++.+.+.+.+.++|+-.++...+.-.|+++
T Consensus       263 ~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~---~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~  339 (412)
T PF01306_consen  263 YLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGS---GFATNPWVISLIKLLHALEFPLLLVAAFKYITA  339 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHH---hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555666789999999999999999999877633222   246789999999999999999999999999999


Q ss_pred             CCCccchHhHHHHH-HHHHHhhhhhhhHHHhhhhhccCCcccccc-hhHHHHHHHHHHHHHHHHhccC
Q 011720          143 YPTATRKGTYISLF-WSIFNMGGVVGGLIPFIMNYHRTDAESVND-KTYIAFMCFMSAGAALSLAILP  208 (479)
Q Consensus       143 ~~~~~~RG~~~g~~-~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~-~~~~i~~~l~~l~~~l~~~~~~  208 (479)
                      ..|++.......+. +...++|..+.+.+...+ +.     +.+. .+|++...+.++..++..+.++
T Consensus       340 ~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~l-yd-----~~G~~~tylimg~iv~~~~li~~f~l~  401 (412)
T PF01306_consen  340 HFDKRLSATLYLVGFQFAKQIGIIILSPLAGYL-YD-----RIGFQHTYLIMGLIVLPFTLISAFTLK  401 (412)
T ss_dssp             HS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             hCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhh-Hh-----hcCcHHHHHHHHHHHHHHHHHheeeec
Confidence            99988877766663 456677777766666544 21     1332 3566666655555556666554

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.75  E-value=2.8e-05  Score=76.24  Aligned_cols=107  Identities=14%  Similarity=0.111  Sum_probs=74.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhH
Q 011720          275 RGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGP  354 (479)
Q Consensus       275 ~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (479)
                      .|+....+++.+++.++..|.++||  .|||+.+..+..... +...+|+                    ..  .++++.
T Consensus        70 aGflGSsF~ilQ~~sS~~~G~~SD~--yGRkpvll~c~~~va-~s~ll~~--------------------~S--~~F~af  124 (451)
T KOG2615|consen   70 AGFLGSSFSILQFISSPLWGCLSDR--YGRKPVLLACLIGVA-LSYLLWA--------------------LS--RNFAAF  124 (451)
T ss_pred             hhhHhhHHHHHHHHhhhhhhhhhhh--hCchHHHHHHHHHHH-HHHHHHH--------------------HH--HHHHHH
Confidence            4666778899999999999999999  689997776654432 2223331                    01  234222


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          355 FVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       355 ~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      ...=+..|++.+.... ..++++|+. ++++|+.+++......++|..++-.++
T Consensus       125 v~aR~l~Gi~kgnl~v-~rAiisdV~-sek~r~l~ms~v~~a~~lGfilGPmIG  176 (451)
T KOG2615|consen  125 VLARFLGGIFKGNLSV-IRAIISDVV-SEKYRPLGMSLVGTAFGLGFILGPMIG  176 (451)
T ss_pred             HHHHHhhhhccCchHH-HHHHHHhhc-Chhhccceeeeeehhhhcchhhcchhh
Confidence            2223556777766554 788999999 679999999988777777776665555

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.73  E-value=0.00017  Score=72.80  Aligned_cols=145  Identities=13%  Similarity=-0.000  Sum_probs=87.1

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCC
Q 011720          270 FNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGN  349 (479)
Q Consensus       270 f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (479)
                      .+..+.++....+.++..++.+..|++.||  +|||+... +........ ..    ...               ..  .
T Consensus        23 ~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr--~grr~~~~-~~~~~~~~~-~~----~~~---------------~~--~   77 (368)
T TIGR00903        23 VSKEELGLLAITYPAAFLALTIPSGLLLDR--AFKRWFLF-GSLATFAAA-AG----RLL---------------DP--F   77 (368)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccchHHHH-HHHHHHHHH-HH----HHH---------------Hh--c
Confidence            355566777777888999999999999999  67887533 221111110 00    000               01  2


Q ss_pred             CchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccCcc--hhHHHHHHHHHHHh
Q 011720          350 DFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVS--LLSQLIINWSLTTV  427 (479)
Q Consensus       350 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~--~~~~~~i~~~~~~~  427 (479)
                      ++....+.-++.|++.+... .....+++.+ |+++|+++.++......+|..++..+.+...+  .|+..  .+..-++
T Consensus        78 ~~~~l~~~R~l~G~g~~~~~-~~~~~~~~~~-~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~--f~~~~~l  153 (368)
T TIGR00903        78 NYEWLLACQLLAALGQPFLL-NAFAPAASQI-REERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLL--IIPIAAV  153 (368)
T ss_pred             cHHHHHHHHHHHHhHhHHHH-HHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH--HHHHHHH
Confidence            23445555666777776543 3455568888 78999999999999999999998776653222  23321  1111111


Q ss_pred             hhhhhheeeeeEeccCC
Q 011720          428 SYPLLVVLVMLAVKDDD  444 (479)
Q Consensus       428 ~~~~~~~~v~~~~pet~  444 (479)
                      .. +...+.++++||+.
T Consensus       154 ~~-~~~~~~~~~lp~~p  169 (368)
T TIGR00903       154 AA-AGIILVLAALPALP  169 (368)
T ss_pred             HH-HHHHHHHHHcCCCC
Confidence            11 22344566789874

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.72  E-value=0.00032  Score=81.56  Aligned_cols=118  Identities=11%  Similarity=0.012  Sum_probs=89.5

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhh-----------------hccCchhhHHH
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYY-----------------NHHHDQTFAVV  120 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~-----------------~~~~~~~~li~  120 (479)
                      +...+...+....+..++.++.+.++|+.++++.+.++.++..+....+...                 ....+.+.+++
T Consensus       260 ~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (1140)
T PRK06814        260 ENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILI  339 (1140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHH
Confidence            3445555666777778889999999998887776666655444322222110                 01156778888


Q ss_pred             HHHHHhhhhhhhhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          121 AGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       121 ~R~i~G~g~g~~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      +-++.|++.+...+...+++.+.+|++.||+.+|.+++...+|..+|+++...+.
T Consensus       340 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~  394 (1140)
T PRK06814        340 DLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ  394 (1140)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998888999999999999999999999999999999998876553

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.70  E-value=2.9e-05  Score=80.97  Aligned_cols=116  Identities=13%  Similarity=0.089  Sum_probs=82.8

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCC
Q 011720          270 FNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGN  349 (479)
Q Consensus       270 f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (479)
                      ++..+.++....+.++..++.++.|++.||  +|||+....+.....+.. .+.    .+    .          ..  .
T Consensus        73 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr--~g~r~~l~~~~~~~~~~~-~~~----~~----~----------~~--~  129 (465)
T TIGR00894        73 WSGALQGLILSSHFYGQIIIQIPVGYLAGK--YVFKWSIGIGMFLSSVIS-IVI----PW----A----------AG--G  129 (465)
T ss_pred             CCHHHhhHHHHHHHHHHHHHHcchHHHHHH--hCcchhhHHHHHHHHHHH-HHH----HH----H----------HH--c
Confidence            344566777778899999999999999999  788886665543321111 110    00    0          01  2


Q ss_pred             CchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          350 DFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       350 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      .+...++.-++.|+..+...+....++++.+ |+++|+++.++......+|..++..+..
T Consensus       130 ~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~i~~~l~~  188 (465)
T TIGR00894       130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWA-PPKERSRLLGMSTSGFQLGTFIFLPISG  188 (465)
T ss_pred             CchHHHHHHHHHHHhcccchhhHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2344566677889999888888888899999 8899999999999888888888766553

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.69  E-value=0.0006  Score=69.11  Aligned_cols=114  Identities=16%  Similarity=0.051  Sum_probs=72.9

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh-h
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG-Q  136 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~-~  136 (479)
                      +...+...+....+..++.++.+++.||+|+|+.+.++..+..+.......  ..++.+..++..++.|+|.....+. .
T Consensus       234 ~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~  311 (382)
T PRK10091        234 ETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFF--FGGMKTASLIFAFICCAGLFALSAPLQ  311 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHhhhHHHH
Confidence            444555556666677888999999999999999998887765542222211  1234455566666777766544332 2


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      .....+..+++.++...  ......+|..+|+.+...+.
T Consensus       312 ~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~  348 (382)
T PRK10091        312 ILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMML  348 (382)
T ss_pred             HHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHH
Confidence            23444544555566543  35677899999998887653

>TIGR01272 gluP glucose/galactose transporter

Probab=97.66  E-value=0.0012  Score=65.06  Aligned_cols=114  Identities=14%  Similarity=0.081  Sum_probs=78.5

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      .++.......+....++.+|.++.+++.||+|+|+.+.++.++.++.......   .++.. ...+=++.|++.+..++.
T Consensus       175 ~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~---~~~~~-~~~~~~l~g~~~s~i~P~  250 (310)
T TIGR01272       175 LPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAAL---THGYV-AMWFVLALGLFNSIMFPT  250 (310)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH---cCCHH-HHHHHHHHHHHHHHHHHH
Confidence            34556666677888889999999999999999999888887765553222211   12222 233555789999999888


Q ss_pred             hhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          136 QGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       136 ~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      ..+...+..|+ +.+++.++. ....+|..++|.+...+.
T Consensus       251 ~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~la  288 (310)
T TIGR01272       251 IFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLA  288 (310)
T ss_pred             HHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHH
Confidence            77777766543 355666665 455688888887665553

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.65  E-value=0.0011  Score=67.65  Aligned_cols=104  Identities=13%  Similarity=0.021  Sum_probs=71.9

Q ss_pred             HHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCcc
Q 011720           68 LYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTAT  147 (479)
Q Consensus        68 ~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~  147 (479)
                      .-.+..++.++.+.+.||.+ |+.+..+..+..........  ..++.+.+++..++.|++.+...+...+++.+..| +
T Consensus       261 ~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~  336 (394)
T PRK10213        261 FGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTL--WGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-D  336 (394)
T ss_pred             HHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-c
Confidence            33345566678888888854 44444444433321111111  13457788889999999999988888878887775 5


Q ss_pred             chHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          148 RKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       148 ~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      ++++..+++....++|..+|+.++..+.
T Consensus       337 ~~~~~~~~~~~~~~lg~~~G~~l~G~l~  364 (394)
T PRK10213        337 QAEKAGSIQVAVIQLANTCGAAIGGYAL  364 (394)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6778888888888999999999988764

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.64  E-value=0.00096  Score=63.15  Aligned_cols=106  Identities=17%  Similarity=0.124  Sum_probs=73.5

Q ss_pred             HHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhh-h-c--cCchhhHHHHHHHHhhhhhhhhhhhhhhhhc
Q 011720           67 ALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYY-N-H--HHDQTFAVVAGAVLGIGAGLLWAGQGAIMTS  142 (479)
Q Consensus        67 ~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~-~-~--~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e  142 (479)
                      .-..+..+ .+++|.+.|++|+|.++.+|++...+.-...... . .  ..+.|.+.+.-++.|.|.+...++.-....+
T Consensus        45 ~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~  123 (250)
T PF06813_consen   45 AGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVR  123 (250)
T ss_pred             HHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHH
Confidence            33344444 4889999999999999999987655433332222 1 1  2467888888888888877766666555567


Q ss_pred             CCCccchHhHHHHHHHHHHhhhhhhhHHHhhh
Q 011720          143 YPTATRKGTYISLFWSIFNMGGVVGGLIPFIM  174 (479)
Q Consensus       143 ~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i  174 (479)
                      ++| ++||+..|+.-....++..+=..+...+
T Consensus       124 NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~  154 (250)
T PF06813_consen  124 NFP-RSRGTVVGILKGFFGLSAAIFTQIYSAF  154 (250)
T ss_pred             hCc-cccCceehhhhHHHHhHHHHHHHHHHHH
Confidence            775 6899999999888888776654444444

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.63  E-value=0.00039  Score=71.26  Aligned_cols=105  Identities=20%  Similarity=0.245  Sum_probs=83.8

Q ss_pred             HHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCc
Q 011720           67 ALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTA  146 (479)
Q Consensus        67 ~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~  146 (479)
                      +.+.+--+.=++.+.+.+|+|+-+++.++..++.+   =+++....+|.|+.+..-+++|+..+..|.+..+|++..+||
T Consensus       414 ~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~---Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp  490 (618)
T KOG3762|consen  414 LCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVG---RFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPP  490 (618)
T ss_pred             hhccchHHHHHHHHHHHHHhcccceeeehhhHHHH---HHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            33444444446788999999999999999887764   344333458999999999999999999999999999999999


Q ss_pred             cchHhHHHHHHHHH-HhhhhhhhHHHhhh
Q 011720          147 TRKGTYISLFWSIF-NMGGVVGGLIPFIM  174 (479)
Q Consensus       147 ~~RG~~~g~~~~~~-~~G~~iG~~i~~~i  174 (479)
                      +.|..+-++..... .+|--+|++|+..+
T Consensus       491 ~l~at~Q~l~~g~f~GlG~g~GslIGG~~  519 (618)
T KOG3762|consen  491 GLRATAQGLLQGIFHGLGKGLGSLIGGFV  519 (618)
T ss_pred             cchHHHHHHHHHHhcccCcchhhhhhhhh
Confidence            99999999887654 56666666666644

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.59  E-value=0.01  Score=55.89  Aligned_cols=66  Identities=23%  Similarity=0.372  Sum_probs=51.5

Q ss_pred             hhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhh-hhhhhcCC
Q 011720           75 FGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQ-GAIMTSYP  144 (479)
Q Consensus        75 g~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~-~~~i~e~~  144 (479)
                      ...+.|.++|+.|||+.-+.-++.|++   +++.- .++.+-.++++|++.|++.+....+- .-++.|.-
T Consensus        88 FGtivgSLaDkqGRKracvtycitYiL---sCiTK-hSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn  154 (454)
T KOG4332|consen   88 FGTIVGSLADKQGRKRACVTYCITYIL---SCITK-HSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN  154 (454)
T ss_pred             HHHHHHHHHhhhccccceeeehHHHHH---HHHhh-cCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence            346789999999999998887777765   55543 57778889999999999999976654 44666754

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.54  E-value=0.0022  Score=68.16  Aligned_cols=105  Identities=17%  Similarity=0.142  Sum_probs=81.6

Q ss_pred             HHHHHHhhhhhhhhhhccch-hHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCcc
Q 011720           69 YTTFSVFGILGGGVYNIFGP-RVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTAT  147 (479)
Q Consensus        69 ~~~~aig~l~~g~l~d~~Gr-k~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~  147 (479)
                      ..+..+++++.+.+..+++| ||.++++++.+.++.++.... ..+|....+..-++.|+|.|...........-..|++
T Consensus       359 ~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~-~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~  437 (599)
T PF06609_consen  359 GFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV-RPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDE  437 (599)
T ss_pred             HHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHc-cCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCch
Confidence            34456677888889988887 888889988877766654433 2456667788899999999987666555566667899


Q ss_pred             chHhHHHHHHHHHHhhhhhhhHHHhhh
Q 011720          148 RKGTYISLFWSIFNMGGVVGGLIPFIM  174 (479)
Q Consensus       148 ~RG~~~g~~~~~~~~G~~iG~~i~~~i  174 (479)
                      +.|..+|+..+...+|..+|..+...+
T Consensus       438 ~ig~a~gL~~s~R~~GGsIg~aIy~~I  464 (599)
T PF06609_consen  438 DIGTATGLTGSIRSIGGSIGYAIYNAI  464 (599)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            999999999999999999998876644

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.54  E-value=0.00025  Score=75.08  Aligned_cols=140  Identities=14%  Similarity=0.152  Sum_probs=91.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchh
Q 011720          274 TRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAG  353 (479)
Q Consensus       274 ~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (479)
                      ...+....+.+|.++|+++.|.++||  +|||+..+++.....+..  +.   .++                .  +++..
T Consensus       119 ~~~~~~s~~~~G~~vG~~i~g~lsD~--~GRk~~~~~~~~~~~i~~--~~---~a~----------------a--~~~~~  173 (521)
T KOG0255|consen  119 LVALGQSLFFLGVLVGSLIFGPLSDR--FGRKPVLLVSLLLFIIFG--IL---TAF----------------A--PNYWM  173 (521)
T ss_pred             HHHHHHHHHHHHHHHHHhhheehHhh--cccHHHHHHHHHHHHHHH--HH---HHH----------------h--CcHHH
Confidence            45566778899999999999999999  899998887765432221  11   111                1  45566


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccCcchhHHHHHHHHHHHhhhhhhh
Q 011720          354 PFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVSLLSQLIINWSLTTVSYPLLV  433 (479)
Q Consensus       354 ~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  433 (479)
                      ..++=++.|++.++.....+.+..|+. ++++|+.+.++ ......+..+.........+.|+.+  .|...+.+.+.. 
T Consensus       174 ~~~~Rfl~G~~~~~~~~~~~~~~~E~~-~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~--~~~~~~~~~~~~-  248 (521)
T KOG0255|consen  174 FLIFRFLSGFFGSGPLTVGFGLVAEIV-SPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWL--FWIISIPSGLFL-  248 (521)
T ss_pred             HHHHHHHHHhhccchhHHhHhhheeec-CcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHH-
Confidence            677778899999999998999999999 78999999887 5555555555544443333345433  333222222111 


Q ss_pred             eeeeeEeccCC
Q 011720          434 VLVMLAVKDDD  444 (479)
Q Consensus       434 ~~v~~~~pet~  444 (479)
                       +.+++.||+.
T Consensus       249 -~~~~l~~Es~  258 (521)
T KOG0255|consen  249 -LLWFLPPESP  258 (521)
T ss_pred             -HHHHccCcCh
Confidence             1156667883

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.49  E-value=5.3e-05  Score=76.20  Aligned_cols=114  Identities=20%  Similarity=0.224  Sum_probs=88.9

Q ss_pred             cchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCC
Q 011720          271 NLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGND  350 (479)
Q Consensus       271 ~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (479)
                      +....++....+.++..++++++|++.||  ..||+.+.+|...-..+   ..+.+.                 .   ..
T Consensus        66 ~~s~~Gll~~vf~v~~~i~sPl~gyLadr--yNR~~v~~vG~~iW~~A---v~~~~f-----------------s---~~  120 (493)
T KOG1330|consen   66 SDSELGLLQTVFIVVFMIASPLFGYLADR--YNRKRVIAVGIFIWTLA---VFASGF-----------------S---NH  120 (493)
T ss_pred             CchhccchhHHHHHHHHHHHHHHHHHHhh--cCcceEEeeHHHHHHHH---HHHHHH-----------------H---HH
Confidence            34456888889999999999999999999  56988877775432111   111001                 0   12


Q ss_pred             chhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhccc
Q 011720          351 FAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTH  410 (479)
Q Consensus       351 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~  410 (479)
                      ++...++=.+.|++-+.+.+....+++..+ +.++|++.++++++....|..+++.++..
T Consensus       121 Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f-~~~~Rs~~~~ify~~ipvGsglG~vvgs~  179 (493)
T KOG1330|consen  121 FWQVLLCRGFVGIGEASYSPIAPSLIADSF-PDDKRSRVLGIFYFAIPVGSGLGYVVGSV  179 (493)
T ss_pred             HHHHHHHHHHhccchhhhcccchhHhhhcC-cchhhhHHHHHhhhhcccccceeEEeeee
Confidence            455666667899999999999999999999 77899999999999999999999998853

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.42  E-value=0.0007  Score=73.36  Aligned_cols=135  Identities=15%  Similarity=0.074  Sum_probs=86.8

Q ss_pred             cchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCC--------------
Q 011720          271 NLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHD--------------  336 (479)
Q Consensus       271 ~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------------  336 (479)
                      +..+.+++...+.++..++.++.+++.||  .+||+.+.+|.+.+.+. .++....-.+..+|..+              
T Consensus        66 ss~~~G~i~s~~~i~~~~~~i~v~~~~~r--~~r~~~i~~g~ll~~lg-~ll~alphf~~~~y~~~~~~~~~~~~~~~~~  142 (633)
T TIGR00805        66 STSSSGLINGSYEIGNLLLIIFVSYFGTK--LHRPIVIGIGCAIMGLG-SFLLSLPHFLSGRYSYSTTVSSTGNLSSANS  142 (633)
T ss_pred             CCCcceeeeehhhHHHHHHHHHHHHhhcc--cCcceEEEecHHHHHHH-HHHHhChHHhcCCcccccccccccccccccc
Confidence            44566777778899999999999999999  67888777776554322 22211000001111100              


Q ss_pred             -----C--CC--Ccc---ccc-CC--CCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHH
Q 011720          337 -----D--PP--KRL---DFK-TS--GNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGA  401 (479)
Q Consensus       337 -----~--~~--~~~---~~~-~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~  401 (479)
                           +  .+  +..   +.. +.  ...+...++.-++.|++.+...+....++.+.+ ++++|+++.+++.....+|.
T Consensus       143 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~-~~~~~~~~~~i~~~~~~iG~  221 (633)
T TIGR00805       143 FLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFA-KSKNSPLYIGILESIAVFGP  221 (633)
T ss_pred             ccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccC-CccccHHHHHHHHHHHHhhh
Confidence                 0  00  000   000 00  012334455668899999998888889999999 78899999999999999999


Q ss_pred             HHHhhhcc
Q 011720          402 AVAWQVDT  409 (479)
Q Consensus       402 ~i~~~~~~  409 (479)
                      ++++.+..
T Consensus       222 ~lG~llgg  229 (633)
T TIGR00805       222 AFGYLLGS  229 (633)
T ss_pred             HHHHHHHH
Confidence            98877653

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10133 L-fucose transporter; Provisional

Probab=97.40  E-value=0.0021  Score=66.61  Aligned_cols=116  Identities=15%  Similarity=0.082  Sum_probs=82.2

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCC
Q 011720          270 FNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGN  349 (479)
Q Consensus       270 f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (479)
                      .+..+.++....+.++..++.++.|++.||  +|||+....+....... ..+..  ..              . ..  +
T Consensus        58 ~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr--~G~r~~l~~g~~~~~~~-~~l~~--~~--------------~-~a--~  115 (438)
T PRK10133         58 LTNFQAGLIQSAFYFGYFIIPIPAGILMKK--LSYKAGIITGLFLYALG-AALFW--PA--------------A-EI--M  115 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHHHHH-HHHHH--HH--------------H-hc--C
Confidence            355567888888999999999999999999  78999777765443211 11110  00              0 11  3


Q ss_pred             CchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          350 DFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       350 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      ++......-++.|++.+...+..+.++.+.. +.++|.+..++.+...++|..++..+.
T Consensus       116 ~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~-~~~~~~~~~s~~~~~~~~G~~~g~~~g  173 (438)
T PRK10133        116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLG-PESSGHFRLNLAQTFNSFGAIIAVVFG  173 (438)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC-ChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666677788888888887787777766 555666678899999999999887664

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.39  E-value=0.022  Score=57.55  Aligned_cols=294  Identities=14%  Similarity=0.088  Sum_probs=140.2

Q ss_pred             hhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccchHhHHHH
Q 011720           76 GILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISL  155 (479)
Q Consensus        76 ~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~RG~~~g~  155 (479)
                      .++++++.+|..-+.-..+..+...   .+++..+.++|.++-+++-++.+++.|.-=..--.+. ...++    ...+-
T Consensus        76 Kl~aP~fi~~v~y~~Ri~~~~~l~~---~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt-~~y~~----~~l~~  147 (402)
T PF02487_consen   76 KLIAPFFIHRVPYWIRILICVALSA---AGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLT-HFYGK----SSLSA  147 (402)
T ss_pred             HHHhHhhhhhccchHHHHHHHHHHH---HHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHH-HhcCc----ccccc
Confidence            3668888888764332233333222   2444444568888888999999998887333222332 23332    34666


Q ss_pred             HHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccC-Cccc---ccC---CCCcc---ccc-
Q 011720          156 FWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILP-PSRV---IRD---DGTRC---TNI-  223 (479)
Q Consensus       156 ~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~-~~~~---~r~---d~~~~---~~~-  223 (479)
                      |.+....+.++|+..-.++..     ..++-+ ...+...+.++-.+..++++| |+..   .+.   ++.+.   +.+ 
T Consensus       148 wssGTG~aGl~Ga~~y~~lT~-----~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (402)
T PF02487_consen  148 WSSGTGGAGLVGALYYLGLTT-----LGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESEDEAEDDLLESET  222 (402)
T ss_pred             ccCCcChhhHHHHHHHHHHHH-----hCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCCccccccccccc
Confidence            766667777777766554432     123222 333333333332223333444 2211   110   00000   000 


Q ss_pred             ---c-cCCHHHHHHHHHHHhhchHHHHHHHHHH--Hhhh-hhhccccccc-c-ccccchh-hhHHHHHHHHHHHHHHHHh
Q 011720          224 ---K-YSKVSTEAIEILKLFRNWKMLLLFPAAW--ASNF-FYSYQFNNVN-G-LMFNLRT-RGLNNVFYWGAQMLGSVGI  293 (479)
Q Consensus       224 ---~-~~~~~~~~~~~~~~~~~~r~ll~~~~~~--~~~~-~~s~~~~~~~-~-~~f~~~~-~~l~~~~~~i~~~i~~~~~  293 (479)
                         + +...+..+++.++..+ +-+....|+..  +..+ ......++.. + ..++.++ -..+...|.+|.+++.--.
T Consensus       223 ~~~~~~~~~~~~~~~k~~~~k-~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~  301 (402)
T PF02487_consen  223 SESKPDSSSKLSFKEKLKRLK-PLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLLYQLGVFISRSSL  301 (402)
T ss_pred             ccccccccchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHHHHHHHhhhhcce
Confidence               0 0011112232233221 11123334332  1111 1122222221 1 1122222 2356677888777765422


Q ss_pred             hhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHH
Q 011720          294 GYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVY  373 (479)
Q Consensus       294 g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  373 (479)
                      . +.   ++  |+..+...  +..+.++++.    ++.-|         ++.   ++.+.++++.++-|+..+......+
T Consensus       302 ~-~~---ri--r~lwils~--LQ~~nl~~~~----l~s~~---------~fi---psi~ivf~lif~eGLlGGa~YVNtF  357 (402)
T PF02487_consen  302 P-FF---RI--RRLWILSL--LQVINLVFLL----LQSWY---------RFI---PSIWIVFVLIFYEGLLGGASYVNTF  357 (402)
T ss_pred             e-ee---eh--hhHHHHHH--HHHHHHHHHH----HHHHH---------HHh---hHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            1 11   12  22223221  1112222211    11101         122   4456677777777877777766677


Q ss_pred             HHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          374 WVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       374 ~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      ..+.+-. ++++|.-+.+......++|.+++-.++
T Consensus       358 ~~I~~~~-~~~~REFslg~vsvsds~GI~lAgll~  391 (402)
T PF02487_consen  358 YRISEEV-PPEDREFSLGAVSVSDSLGILLAGLLG  391 (402)
T ss_pred             HHHHhcC-CHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            6677766 789999999999998999888887665

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PTZ00207 hypothetical protein; Provisional

Probab=97.37  E-value=0.0015  Score=69.54  Aligned_cols=96  Identities=10%  Similarity=0.022  Sum_probs=63.2

Q ss_pred             HHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHH
Q 011720          288 LGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAM  367 (479)
Q Consensus       288 i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  367 (479)
                      +..++.|++.||  +|||+...++.+...+.....+   +..    .        +...  .+++..++..++.|++.+.
T Consensus        76 ~~~lp~G~L~Dr--~G~R~vllig~ll~~iG~ll~a---la~----~--------~~i~--~s~~~l~l~r~l~G~G~~~  136 (591)
T PTZ00207         76 YFLLPYSFIYDY--LGPRPIFVLSMTVFCLGTLLFA---LTF----Q--------EVIE--GSVVRLSVYNGLMTLGCML  136 (591)
T ss_pred             HHHHHHHHHHHH--hCcHHHHHHHHHHHHHHHHHHH---HHh----c--------cccc--CcHHHHHHHHHHHHHHHHH
Confidence            345568999999  7899988877654322221111   111    1        0011  3445555666677888777


Q ss_pred             HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHH
Q 011720          368 FQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVA  404 (479)
Q Consensus       368 ~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~  404 (479)
                      ..+.....+.+.+  |++|+++.|+.+....+|.++.
T Consensus       137 ~~~~~~~~i~~~F--p~~RG~a~Gi~~~~~gLGsaI~  171 (591)
T PTZ00207        137 FDLGAVVTVLSVF--PSNRGAVVAIMKTFTGLGSAIL  171 (591)
T ss_pred             HHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHHHHH
Confidence            7776666677777  5789999999999999999763

>PRK11462 putative transporter; Provisional

Probab=97.37  E-value=0.0033  Score=65.59  Aligned_cols=107  Identities=11%  Similarity=-0.002  Sum_probs=66.8

Q ss_pred             HHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCC-
Q 011720           67 ALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPT-  145 (479)
Q Consensus        67 ~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~-  145 (479)
                      .......++.+++++++||+|+|+.+..+..+..+........ ...+...+++.-++.|++.+...+.....+.|..+ 
T Consensus       271 ~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~  349 (460)
T PRK11462        271 TYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV-PMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDY  349 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence            3344445677899999999999988775554333311121111 12233344555577788877766666667777665 


Q ss_pred             ------ccchHhHHHHHHHHHHhhhhhhhHHHhhh
Q 011720          146 ------ATRKGTYISLFWSIFNMGGVVGGLIPFIM  174 (479)
Q Consensus       146 ------~~~RG~~~g~~~~~~~~G~~iG~~i~~~i  174 (479)
                            ++..|...+.+.....+|..+|+.+...+
T Consensus       350 ~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~i  384 (460)
T PRK11462        350 GEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWM  384 (460)
T ss_pred             hHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  33345666777777888888888776644

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.35  E-value=0.0025  Score=67.22  Aligned_cols=97  Identities=7%  Similarity=-0.019  Sum_probs=71.3

Q ss_pred             hhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhc------cCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccch
Q 011720           76 GILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNH------HHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRK  149 (479)
Q Consensus        76 ~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~------~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~R  149 (479)
                      ..+.+.+.+|++.++.+.+|.++..+..........      .-|.+.++..+++.|+|.....+....++.+.+|++.|
T Consensus       337 ~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~r  416 (500)
T PRK09584        337 AAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLM  416 (500)
T ss_pred             HHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHH
Confidence            344566667776667777777765552222111110      01356789999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHhhhhhhhHHHh
Q 011720          150 GTYISLFWSIFNMGGVVGGLIPF  172 (479)
Q Consensus       150 G~~~g~~~~~~~~G~~iG~~i~~  172 (479)
                      |+.+|.+.....+|+.+++.+..
T Consensus       417 g~~~g~~~l~~a~g~~~~g~~~~  439 (500)
T PRK09584        417 GFIMGSWFLTTAGAALIAGYVAN  439 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998888888887776654

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.34  E-value=1.3e-05  Score=82.98  Aligned_cols=112  Identities=11%  Similarity=0.103  Sum_probs=79.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhH
Q 011720          275 RGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGP  354 (479)
Q Consensus       275 ~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (479)
                      .++......++.++|+++.|++.||  +|||+..+.+...+.+.. .+.       . +.+       + .   .++...
T Consensus        48 ~~~~~~~~~~g~~~G~~~~g~~~d~--~GRk~~~~~~~~~~~i~~-~~~-------~-~~~-------~-~---~~~~~~  105 (451)
T PF00083_consen   48 SSLLTSSFFIGAIVGALIFGFLADR--YGRKPALIISALLMIIGS-ILI-------A-FAP-------S-Y---NNFWML  105 (451)
T ss_pred             HHHHHHHHHhhhccccccccccccc--cccccccccccccccccc-ccc-------c-ccc-------c-c---cccccc
Confidence            4566677889999999999999999  789998777755432111 110       0 110       0 0   023344


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          355 FVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       355 ~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      .+.-++.|++.+...+....++.|+. |+++|++..++......+|..++..+..
T Consensus       106 ~~~R~~~G~~~g~~~~~~~~~~~E~~-~~~~R~~~~~~~~~~~~~G~~~~~~~~~  159 (451)
T PF00083_consen  106 LIGRFLIGFGIGGAYVVSPIYISEIA-PPKHRGFLSSLFQLFWALGILLASLIGY  159 (451)
T ss_pred             cccccccccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence            45556788888888888888999999 8899999998888888888877777654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.00056  Score=67.71  Aligned_cols=112  Identities=17%  Similarity=0.100  Sum_probs=84.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCch
Q 011720          273 RTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFA  352 (479)
Q Consensus       273 ~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (479)
                      .+.|+......+.+++.+++.|.+.||  +|+|...++|+..+... .++++    +               .   .+++
T Consensus       106 ~~iG~LFaskA~~qllvnp~~G~l~~~--iGy~ipm~~Gl~vmf~s-TilFa----f---------------g---~sy~  160 (464)
T KOG3764|consen  106 TQIGLLFASKALVQLLVNPFFGNLIDR--IGYKIPMVAGLFVMFLS-TILFA----F---------------G---NSYP  160 (464)
T ss_pred             cchhHHHHHHHHHHHHhcccchhhHHH--hccccHHHHHHHHHHHH-HHHHH----H---------------c---chhH
Confidence            356888889999999999999999998  89999999998766422 22221    1               1   2345


Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          353 GPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       353 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      ..++.=.+.|.++++..+.-.+.+++.+.+..+|++++|+.-...++|..++.-++.
T Consensus       161 ~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGG  217 (464)
T KOG3764|consen  161 MLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGG  217 (464)
T ss_pred             HHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCccc
Confidence            556666789999999998888889988855567899999888877777777655553

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.34  E-value=0.0012  Score=69.40  Aligned_cols=102  Identities=14%  Similarity=0.162  Sum_probs=75.9

Q ss_pred             HHhhhhhhhhhhccchhHH-------HhhhhHHHHHHHHH-----HHhhhc--cCchhhHHHHHHHHhhhhhhhhhhhhh
Q 011720           73 SVFGILGGGVYNIFGPRVT-------LAAGCSTYVLYAGS-----FLYYNH--HHDQTFAVVAGAVLGIGAGLLWAGQGA  138 (479)
Q Consensus        73 aig~l~~g~l~d~~Grk~~-------l~ig~~~~~i~~~~-----~~~~~~--~~~~~~li~~R~i~G~g~g~~~~~~~~  138 (479)
                      .+.+++.+.+.||+|||+.       +.+|.++..+....     ......  ..+.+.++..-++.|+|.++..+....
T Consensus       323 ii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~  402 (489)
T PRK10207        323 VVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLA  402 (489)
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            3556667899999999863       55555443321110     111111  134677888999999999999999999


Q ss_pred             hhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhh
Q 011720          139 IMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIM  174 (479)
Q Consensus       139 ~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i  174 (479)
                      ++.+.+|++.+|.++|+++...++|..+|..++...
T Consensus       403 ~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        403 MIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999998877543

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.23  E-value=0.11  Score=51.56  Aligned_cols=94  Identities=13%  Similarity=0.024  Sum_probs=50.4

Q ss_pred             hhhhhhhh-----ccchhHHHhhhhHHHHHHHHH-HH--hhh-------ccCchhhHHHHHHHHhhhhhhhhhhhhhhhh
Q 011720           77 ILGGGVYN-----IFGPRVTLAAGCSTYVLYAGS-FL--YYN-------HHHDQTFAVVAGAVLGIGAGLLWAGQGAIMT  141 (479)
Q Consensus        77 l~~g~l~d-----~~Grk~~l~ig~~~~~i~~~~-~~--~~~-------~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~  141 (479)
                      +.+.|+.|     |+|||++-++-+-. .+.... ++  +.+       ..++...+...=++.=+.++.-=.+.-...-
T Consensus        81 llWaPiVDs~y~k~~GrrksWvvp~q~-llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwAL  159 (510)
T KOG3574|consen   81 LLWAPIVDSVYSKRFGRRKSWVVPCQY-LLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWAL  159 (510)
T ss_pred             HHHHhhhHHHHHHhhccccceeeehHH-HHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence            68999999     99999986654431 110001 01  110       0112222222223344444443344444555


Q ss_pred             cCCCccchHhHHHHHHHHHHhhhhhhhHHH
Q 011720          142 SYPTATRKGTYISLFWSIFNMGGVVGGLIP  171 (479)
Q Consensus       142 e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~  171 (479)
                      .+-.|++-|-+........+.|..+|+.+-
T Consensus       160 tmLs~e~lgyaST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  160 TMLSRENLGYASTCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             HhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence            556788888888877666666666666543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.23  E-value=0.0027  Score=66.48  Aligned_cols=62  Identities=15%  Similarity=0.185  Sum_probs=57.2

Q ss_pred             CchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhh
Q 011720          113 HDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIM  174 (479)
Q Consensus       113 ~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i  174 (479)
                      .|.+.+++..++.|+|.....+....++++.+|++.||+++|++.....+|..+|+.+....
T Consensus       379 ~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~  440 (475)
T TIGR00924       379 TSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFG  440 (475)
T ss_pred             cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999998876644

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.17  E-value=0.0054  Score=63.05  Aligned_cols=115  Identities=10%  Similarity=-0.057  Sum_probs=83.0

Q ss_pred             cccchh-hhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCC
Q 011720          269 MFNLRT-RGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTS  347 (479)
Q Consensus       269 ~f~~~~-~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (479)
                      +++..+ .+.+.-.+..+..+.-++.|.+.||  +|-|+.+..+.+.-.++. ++    .               .+.  
T Consensus        57 glT~~qv~G~I~s~F~ysYal~qIp~GlLaDr--lG~K~vL~l~~l~Wsl~t-~L----~---------------~fa--  112 (511)
T TIGR00806        57 NFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY--LRYKPVLVLQALSFVCVW-LL----L---------------LLG--  112 (511)
T ss_pred             CCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH--hCchHHHHHHHHHHHHHH-HH----H---------------HHH--
Confidence            455556 6777777888888999999999999  666664444332211111 11    1               111  


Q ss_pred             CCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhccc
Q 011720          348 GNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTH  410 (479)
Q Consensus       348 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~  410 (479)
                       .+.....++=+++|++.+... ..+.++...+ |+++|+++.|+.+....+|.+++..+.+.
T Consensus       113 -~Sl~~L~i~R~llGvaEA~~~-A~~syI~~Wf-P~kER~ratsi~~sg~~vG~~Ia~~L~ql  172 (511)
T TIGR00806       113 -TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLV-PPSRYQRAAAYSRAAVLLGVFLSSVLGQL  172 (511)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             234556777788999998888 6788899999 89999999999999999999999877653

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.14  E-value=0.0012  Score=68.89  Aligned_cols=117  Identities=15%  Similarity=0.102  Sum_probs=72.1

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCC
Q 011720          269 MFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSG  348 (479)
Q Consensus       269 ~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (479)
                      +++..+.+.....+.....++.+++|++.||. .|||+....|...+. +...+    +.    ..        + ..  
T Consensus        41 gls~~~a~~i~~~~~~~~~l~~ligG~LaDRi-lGrrr~iliG~il~~-lg~ll----l~----~~--------~-~~--   99 (493)
T PRK15462         41 KYDDNHAYELFSAYCSLVYVTPILGGFLADKV-LGNRMAVMLGALLMA-IGHVV----LG----AS--------E-IH--   99 (493)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCcHHHHHHHHHHHH-HHHHH----HH----Hh--------h-cc--
Confidence            34555666777777888888999999999993 289987766654432 11111    10    00        0 00  


Q ss_pred             CCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCc--hhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          349 NDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDS--ETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       349 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~--~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      ...  ......+..++.+...+....+++|++ |+  ++|.++++++....++|..++..+.+
T Consensus       100 ~~~--~~l~l~li~iG~G~~~~~~~alv~elf-p~~~~~R~sgf~i~Y~~~nlG~~iap~l~g  159 (493)
T PRK15462        100 PSF--LYLSLAIIVCGYGLFKSNVSCLLGELY-EPTDPRRDGGFSLMYAAGNVGSIIAPIACG  159 (493)
T ss_pred             hhH--HHHHHHHHHHhcccccccHHHHHHHHC-CCCCccccceehHHHHHHHHHHHHHHHHHH
Confidence            111  111111222334444555667889999 43  36889999999999998888877654

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.13  E-value=0.0029  Score=59.94  Aligned_cols=118  Identities=14%  Similarity=0.018  Sum_probs=68.9

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCC
Q 011720          270 FNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGN  349 (479)
Q Consensus       270 f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (479)
                      ++.++.......-.+|.-+| +..|.+.|+  .|.|..+.+|.+....--.++|.   .    +.+.       ..+  +
T Consensus        34 ~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~--~gp~~~l~iG~~~~~~GY~~~~l---~----~~~~-------i~~--~   94 (250)
T PF06813_consen   34 YSQSQLNTLSTAGDIGSYFG-ILAGLLYDR--FGPWVVLLIGAVLGFVGYGLLWL---A----VSGR-------IPS--L   94 (250)
T ss_pred             CCHHHHHHHHHHHHHHhhcc-HHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHH---H----HhCc-------cCc--c
Confidence            44444455555667777665 778999999  67887777775443221112221   1    1111       112  3


Q ss_pred             CchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          350 DFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       350 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      .++...+..+..+...+..++......-+-|  |++|+++.++.+....+++++-..+.
T Consensus        95 ~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NF--P~~RG~vvgilk~~~GLSaai~t~i~  151 (250)
T PF06813_consen   95 PVWLMCLFLFLGGNSSCWFNTASLVTCVRNF--PRSRGTVVGILKGFFGLSAAIFTQIY  151 (250)
T ss_pred             chHHHHHHHHHHcccHHHhhhHHHHHHHHhC--ccccCceehhhhHHHHhHHHHHHHHH
Confidence            4444444444444444444443332233555  67899999999999999998876654

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.12  E-value=0.002  Score=68.23  Aligned_cols=108  Identities=16%  Similarity=0.126  Sum_probs=81.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHH
Q 011720          276 GLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPF  355 (479)
Q Consensus       276 ~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (479)
                      ++......++..+++++.|+++|+  +|||+.++.+.+... +...+.    .+                .  .++....
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~--~GRk~~l~~~~~~~~-iG~ii~----~~----------------a--~~~~~l~  146 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDR--IGRKKTLLLAVVLFL-IGAIII----AL----------------A--PSWYQLI  146 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHH-HHHHHH----HH----------------h--hhHHHHH
Confidence            677788999999999999999999  789987666644321 111110    00                1  2234455


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          356 VLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       356 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      +.=++.|++.+........+++|+. |++.|+...+..+....+|..+++.++.
T Consensus       147 ~GR~l~G~g~G~~~~~~piy~sEia-p~~~RG~l~~~~~l~~~~Gi~~~~~~~~  199 (513)
T KOG0254|consen  147 VGRILTGLGVGGASVLAPVYISEIA-PAHIRGTLVSLYQLFITIGILLGYCINY  199 (513)
T ss_pred             HHHHHhccchhhhhhcchhhHhhcC-ChhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5567788888888888888999999 8889999999999999999999977764

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.06  E-value=0.006  Score=63.16  Aligned_cols=119  Identities=16%  Similarity=0.107  Sum_probs=78.2

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCC
Q 011720          269 MFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSG  348 (479)
Q Consensus       269 ~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (479)
                      +++..+.++......++..++.+..|++.||  +|.|+....+.....+.+ +.. . +..    .        + ..  
T Consensus        66 ~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr--~G~R~v~~~~~ll~~i~~-~~~-~-~a~----~--------~-~~--  125 (462)
T PRK15034         66 NFTTDQLFLLTALPSVSGALLRVPYSFMVPI--FGGRRWTVFSTAILIIPC-VWL-G-IAV----Q--------N-PN--  125 (462)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCChHHHHHHHHHHHHHH-HHH-H-HHH----c--------c-cC--
Confidence            3455567776666777777888888999999  677776555544322111 111 0 110    0        1 11  


Q ss_pred             CCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          349 NDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       349 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      +++....++.++.|+..+.+ +.....+++.+ |+++|+++.|++....++|..+...+.|
T Consensus       126 ~s~~~lli~r~l~Gigg~~f-~~~~~~vs~wf-p~~~rG~A~Gi~~g~G~~G~~l~~~l~p  184 (462)
T PRK15034        126 TPFGIFIVIALLCGFAGANF-ASSMGNISFFF-PKAKQGSALGINGGLGNLGVSVMQLVAP  184 (462)
T ss_pred             CCHHHHHHHHHHHHHHHHhH-HHHHHHHHHHC-CHhHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            35667788888888875544 44666788888 7888999999998777778876666554

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.02  E-value=0.025  Score=55.73  Aligned_cols=151  Identities=11%  Similarity=-0.001  Sum_probs=92.9

Q ss_pred             cccccch--hHHHHHHHHHHhhhhhhhhhhhcCCCCCCCChhhhhhHHHHHHHHHHHhhhhhhhhhhccc-hhHHHhhhh
Q 011720           20 LFRYNSP--LVQVSLIGLVCFCCPGMFNALSGMGGGGQLDPTAANNANTALYTTFSVFGILGGGVYNIFG-PRVTLAAGC   96 (479)
Q Consensus        20 ~~~~~~~--~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~G-rk~~l~ig~   96 (479)
                      .+.|++|  |...+..++-+++...+..=+..+-.+...++...+...+.........++..+.+.+|.. +|+..+..+
T Consensus       202 ~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~  281 (395)
T COG2807         202 RKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLAL  281 (395)
T ss_pred             cccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            3456554  6667777777666543322111111111123444555677777878888999999999654 566666666


Q ss_pred             HHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcC-CCccchHhHHHHHHHHHHhhhhhhhHHHhhh
Q 011720           97 STYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSY-PTATRKGTYISLFWSIFNMGGVVGGLIPFIM  174 (479)
Q Consensus        97 ~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~-~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i  174 (479)
                      +.+.+...++...   +.... +.--++.|+|.|...+.+-..+.+- .++++-++..|+-+..-++=..+||++...+
T Consensus       282 ~~~l~G~~G~~~~---P~~~~-~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~l  356 (395)
T COG2807         282 LLMLVGLVGLLLA---PGQLP-ILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFL  356 (395)
T ss_pred             HHHHHHHHHHHHh---hhhHH-HHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHH
Confidence            6666644444332   11111 2224999999999888877777644 4577778888887765555556778776655

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.89  E-value=0.048  Score=54.76  Aligned_cols=110  Identities=17%  Similarity=0.177  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHhhhhhhhhhh-ccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcC
Q 011720           65 NTALYTTFSVFGILGGGVYN-IFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSY  143 (479)
Q Consensus        65 ~~~~~~~~aig~l~~g~l~d-~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~  143 (479)
                      ++..-.+.-+|-...+.+.. +.+.|+.-.+|+.+-.+...........++.+.+..+-++.|+|.|.+.++.-+.+.+.
T Consensus       250 ta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~l  329 (403)
T PF03209_consen  250 TAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDL  329 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhC
Confidence            33333443344445555444 77777777777776555333333333456789999999999999999999888899999


Q ss_pred             CCccchHhHHHHHHHHHHhhhhhhhHHHhhh
Q 011720          144 PTATRKGTYISLFWSIFNMGGVVGGLIPFIM  174 (479)
Q Consensus       144 ~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i  174 (479)
                      .++++.|..+|.|...+.+..-+|..++..+
T Consensus       330 t~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~  360 (403)
T PF03209_consen  330 TSAGRAGLFMGAWGAAQAIARGLGTFLGGAL  360 (403)
T ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998887777777766654

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.86  E-value=0.19  Score=52.26  Aligned_cols=100  Identities=10%  Similarity=0.010  Sum_probs=62.9

Q ss_pred             hhhhhhhhhccchhHHHhhhhHHHHHHHHHHHh---hhc-c-C-----------------------chhhHHHHHHHHhh
Q 011720           76 GILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLY---YNH-H-H-----------------------DQTFAVVAGAVLGI  127 (479)
Q Consensus        76 ~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~---~~~-~-~-----------------------~~~~li~~R~i~G~  127 (479)
                      .++-+.+++|++|++.+-+-...|..+.+.+..   ++. . +                       +.|..-+.-+...+
T Consensus        61 ~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~el  140 (472)
T TIGR00769        61 MLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAEL  140 (472)
T ss_pred             HHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHH
Confidence            466789999999999887766655554333221   110 0 0                       11221122222222


Q ss_pred             hhhhhhh-hhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          128 GAGLLWA-GQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       128 g~g~~~~-~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      -.....+ .--.++.|+.+++|-.|..+++...-++|.++|+.+...+.
T Consensus       141 w~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       141 WGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222 33457889999999999999999999999999998766654

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=96.81  E-value=0.022  Score=61.71  Aligned_cols=140  Identities=11%  Similarity=0.076  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHhhhhhhhhhhc-cchhHHHhhhhHHHHHHHHHHHhhhccC-----chhhHHHHHHHHhhhhhhhhhhhhh
Q 011720           65 NTALYTTFSVFGILGGGVYNI-FGPRVTLAAGCSTYVLYAGSFLYYNHHH-----DQTFAVVAGAVLGIGAGLLWAGQGA  138 (479)
Q Consensus        65 ~~~~~~~~aig~l~~g~l~d~-~Grk~~l~ig~~~~~i~~~~~~~~~~~~-----~~~~li~~R~i~G~g~g~~~~~~~~  138 (479)
                      ...+.....+.++++|.++|+ +||++++.++.+++.+........+...     .....+++=++..+|.|..-++.++
T Consensus        29 ~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsa  108 (654)
T TIGR00926        29 FHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSA  108 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchh
Confidence            344444456667889999987 8999999999998877432222211101     1233567777888899988888888


Q ss_pred             hhhcCCCcc---chHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcc-cccc-hhHHHHHHHHHHHHHHHH
Q 011720          139 IMTSYPTAT---RKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAE-SVND-KTYIAFMCFMSAGAALSL  204 (479)
Q Consensus       139 ~i~e~~~~~---~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~-~~~~-~~~~i~~~l~~l~~~l~~  204 (479)
                      ...|-.+++   +|-+.+.++....++|+.++..+...+.......+ ...| ..|.+..++++++.++..
T Consensus       109 f~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~  179 (654)
T TIGR00926       109 FGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFM  179 (654)
T ss_pred             hhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence            888776644   46677888888889999888877665531100000 1223 345555555665554433

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=96.73  E-value=0.0095  Score=62.68  Aligned_cols=116  Identities=14%  Similarity=0.056  Sum_probs=90.7

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccch--hHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGP--RVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLW  133 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Gr--k~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~  133 (479)
                      .+.......+++.-....++.++.|.++|+...  ++...++.++..+  .....+ .+++++.++..-++.|+..|...
T Consensus       330 ~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl--~~~~~p-~~~~~~~l~~~~~~fG~~~g~~~  406 (509)
T KOG2504|consen  330 LSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL--ARLFLP-FATTYVGLIVFSILFGFCVGSFS  406 (509)
T ss_pred             CChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH--HHHHHH-HhccHHHHHHHHHHHHHHHHHHH
Confidence            345556666777777778889999999999993  3333444333332  223333 56789999999999999999998


Q ss_pred             hhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhh
Q 011720          134 AGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIM  174 (479)
Q Consensus       134 ~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i  174 (479)
                      ...+.++.|+...++-..+.|+......++.++|+-+...+
T Consensus       407 ~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~  447 (509)
T KOG2504|consen  407 SLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLL  447 (509)
T ss_pred             HHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceee
Confidence            88888999999999999999999999999999999887733

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=96.71  E-value=0.003  Score=63.14  Aligned_cols=119  Identities=16%  Similarity=0.034  Sum_probs=82.3

Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCC
Q 011720          268 LMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTS  347 (479)
Q Consensus       268 ~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (479)
                      .+++..+.++......+...+..++.|++.||  +|-|+....+...+.+-+  ++.. +..               .. 
T Consensus        44 ~~LS~~q~~ll~aiPil~GallRl~~g~l~dr--fGgR~~~~~s~~l~~IP~--~~~~-~a~---------------~~-  102 (417)
T COG2223          44 FGLSEGQKGLLVAIPILVGALLRLPYGFLTDR--FGGRKWTILSMLLLLIPC--LGLA-FAV---------------TY-  102 (417)
T ss_pred             cCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc--cCchHHHHHHHHHHHHHH--HHHH-HHc---------------cC-
Confidence            34566678888777778888889999999999  555554444443322211  2211 110               12 


Q ss_pred             CCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccC
Q 011720          348 GNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHK  411 (479)
Q Consensus       348 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~  411 (479)
                       ++++-..++.++.|+..+.+-. .....++.+ |+++++.+.|++- ..++|.++..++.|..
T Consensus       103 -~~~~~ll~~gll~G~~GasFav-~m~~~s~~f-P~~~qG~AlGI~g-~GN~G~av~q~~~P~v  162 (417)
T COG2223         103 -PSTWQLLVIGLLLGLAGASFAV-GMPNASFFF-PKEKQGLALGIAG-AGNLGVAVAQLVAPLV  162 (417)
T ss_pred             -CchHHHHHHHHHHhcccceehc-ccccccccC-ChhhhhHHHHHhc-cccccHHHHHHHHHHH
Confidence             3445667778888888776655 334678888 8999999999999 8999999999998743

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.62  E-value=0.012  Score=60.70  Aligned_cols=150  Identities=13%  Similarity=0.074  Sum_probs=91.8

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhH
Q 011720          275 RGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGP  354 (479)
Q Consensus       275 ~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (479)
                      -|+......++..++++++|.+..|.+-. |++++.|...+ ++..+++..   +  .+.          .+  ...+..
T Consensus        73 fG~viaa~slg~~i~~liF~~Ws~k~~~~-k~Pli~s~ii~-~~g~llY~~---l--~~~----------~~--~~~y~m  133 (488)
T KOG2325|consen   73 FGLVIAASSLGHAIFSLIFGIWSNKTGSV-KKPLIVSFLIA-IIGNLLYLA---L--AYV----------PN--GVKYLM  133 (488)
T ss_pred             hhHHHHHHHHHHHhcchhhcccccccCCc-ccCHHHHHHHH-HHHHHHHHH---H--Hhc----------cc--chHHHH
Confidence            46777778999999999999999874322 55566665544 233444421   1  111          11  235677


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc----ccCc------c--hhHHHHH-H
Q 011720          355 FVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD----THKV------S--LLSQLII-N  421 (479)
Q Consensus       355 ~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~----~~~~------~--~~~~~~i-~  421 (479)
                      .+..++.|++.+... ..-.|++... .+++|.|+++.....+.+|..++..++    +..-      +  .++.|.. .
T Consensus       134 L~~R~l~Gvg~~n~a-~lR~Y~a~~s-~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~  211 (488)
T KOG2325|consen  134 LVARILTGVGVGNFA-VLRAYIADAS-TVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPA  211 (488)
T ss_pred             HHHHHHcCcCcccHH-HHHHHHHhcc-CccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHH
Confidence            888888888876553 4778888766 467788888887776666666665544    3221      1  2233322 3


Q ss_pred             HHHHHhhhhhhheeeeeEeccCCCC
Q 011720          422 WSLTTVSYPLLVVLVMLAVKDDDKS  446 (479)
Q Consensus       422 ~~~~~~~~~~~~~~v~~~~pet~~~  446 (479)
                      |...+++ ++.+++++++++|-+..
T Consensus       212 w~m~i~~-i~~~v~i~~~f~E~~~~  235 (488)
T KOG2325|consen  212 WLMAILW-IIYIVIILFFFKEVYRG  235 (488)
T ss_pred             HHHHHHH-HHHHHHHHhheeecccC
Confidence            4333333 35666777888888633

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=96.57  E-value=0.0051  Score=62.18  Aligned_cols=135  Identities=14%  Similarity=0.042  Sum_probs=83.2

Q ss_pred             hhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhh-hccCchhhHHHHHHHHhhhhhh-hhhhhhhhhhcCCCccchHhH
Q 011720           75 FGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYY-NHHHDQTFAVVAGAVLGIGAGL-LWAGQGAIMTSYPTATRKGTY  152 (479)
Q Consensus        75 g~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~-~~~~~~~~li~~R~i~G~g~g~-~~~~~~~~i~e~~~~~~RG~~  152 (479)
                      |-++...++|++|||+..+.|.+++.++......+ +.-.+..-+++.-.+..+..-+ ..++...+-+|++|.+-||..
T Consensus       364 Gyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~  443 (538)
T KOG0252|consen  364 GYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTC  443 (538)
T ss_pred             ceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhh
Confidence            45788899999999999999999888855443322 1011222233333333333322 233555677899999999999


Q ss_pred             HHHHHHHHHhhhhhhhHHHhhhhhccCC-cccccchhHHHHHHHHHHHHHHHHhccCCcc
Q 011720          153 ISLFWSIFNMGGVVGGLIPFIMNYHRTD-AESVNDKTYIAFMCFMSAGAALSLAILPPSR  211 (479)
Q Consensus       153 ~g~~~~~~~~G~~iG~~i~~~i~~~~~~-~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~  211 (479)
                      -|+..+.--+|.++|...-.....+... ....+ ..++++..++.++.++.++ .||++
T Consensus       444 hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~-~v~~i~~~~~~~gi~~T~l-~pEtk  501 (538)
T KOG0252|consen  444 HGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVR-NVFIILAGCMLLGILFTLL-IPETK  501 (538)
T ss_pred             hhHHHHhccchHHHHHHHhhHhhhccCCccccch-HHHHHHHHHHHHhHheeEE-eeccc
Confidence            9999999899999987644333221110 11122 2456666666666555444 45554

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=96.22  E-value=0.16  Score=50.28  Aligned_cols=65  Identities=15%  Similarity=0.175  Sum_probs=39.0

Q ss_pred             chHHHHHHHHHHHhhhhh-hccccccccccccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccce
Q 011720          241 NWKMLLLFPAAWASNFFY-SYQFNNVNGLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTR  307 (479)
Q Consensus       241 ~~r~ll~~~~~~~~~~~~-s~~~~~~~~~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~  307 (479)
                      +|+++....+....-|.. .|.+..|-.++++.++.+...........+.+.+.|.+.||  .|||+.
T Consensus        36 qr~yl~vY~La~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~--~Grk~~  101 (354)
T PF05631_consen   36 QRKYLLVYLLAMAADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADR--YGRKKA  101 (354)
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchHH
Confidence            344444444444333321 23323344466777777766666666666777778999999  789984

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=96.22  E-value=0.04  Score=55.09  Aligned_cols=115  Identities=11%  Similarity=0.160  Sum_probs=80.4

Q ss_pred             cchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCC
Q 011720          271 NLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGND  350 (479)
Q Consensus       271 ~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (479)
                      +..+.++....+..+..++++..+++.||  +|+|+-.+.|+..+.+.+.+.|          +..      .  .  ..
T Consensus        46 s~~~a~liqfaff~gYf~~~lpa~~~~kk--~gyk~gi~lgL~l~avg~~lF~----------pAa------~--~--~~  103 (422)
T COG0738          46 TYFEASLIQFAFFGGYFIMSLPAGLLIKK--LGYKAGIVLGLLLYAVGAALFW----------PAA------S--S--KS  103 (422)
T ss_pred             cHHHHHHHHHHHHHHHHHHhccHHHHHHH--hhhHHHHHHHHHHHHHHHHHHh----------hhh------h--h--hh
Confidence            34467888888999999999999999999  7898877767655432222221          111      0  1  22


Q ss_pred             chhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          351 FAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       351 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      +.......+..+.+-+..++..+.+++.+. +++..++-..+.+.++++|.+++..+.
T Consensus       104 y~~FL~~lFila~Gi~~LetaaNp~v~~lg-~~~~a~~rlnl~q~fn~lGa~~gp~~g  160 (422)
T COG0738         104 YGFFLVALFILASGIGLLETAANPYVTLLG-KPESAAFRLNLAQAFNGLGAILGPLLG  160 (422)
T ss_pred             HHHHHHHHHHHHhhhHHHHhccchHHHHhC-CchhHHHHHHHHHHhhhhHHHHHHHHH
Confidence            333333345667777788888888999998 666667778889999999999886654

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.12  E-value=0.038  Score=57.80  Aligned_cols=141  Identities=17%  Similarity=0.189  Sum_probs=88.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchh
Q 011720          274 TRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAG  353 (479)
Q Consensus       274 ~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (479)
                      +-+.....+.++.+++-+..+.+.||....|      +...+    ...|+....+..            +.   .+++.
T Consensus        82 ~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~------~l~~~----~~~w~~~~~~~~------------~~---~s~~~  136 (495)
T KOG2533|consen   82 QLGVLDTVFYVGYIIGQFPSGLLGDRFPLSK------GLSVS----GILWGLFGFLTA------------AV---HSFPG  136 (495)
T ss_pred             hhhhHHHHHHHHHHHHHhhHHHHHHhCChHH------HHHHH----HHHHHHHHHHHH------------HH---hhhHH
Confidence            3355667788899999999999999953111      11111    112211010110            11   23455


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhccc--------CcchhHHHHHHHHHH
Q 011720          354 PFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTH--------KVSLLSQLIINWSLT  425 (479)
Q Consensus       354 ~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~--------~~~~~~~~~i~~~~~  425 (479)
                      ..++-++.|++.++..|..-.+++..+ ..++|+.-++++...+++|+.++-.+.+.        ...+|+..-+..+..
T Consensus       137 ~ialr~llGl~es~~wP~~~~~lg~wy-~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i  215 (495)
T KOG2533|consen  137 LIALRFLLGLFESGGWPGVVAILGNWY-GKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVI  215 (495)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHhhc-ChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHH
Confidence            677888899999999998888999999 67889999999998888888888776643        122444332222221


Q ss_pred             HhhhhhhheeeeeEeccC
Q 011720          426 TVSYPLLVVLVMLAVKDD  443 (479)
Q Consensus       426 ~~~~~~~~~~v~~~~pet  443 (479)
                        . +...+++++++|+-
T Consensus       216 --~-~~~gi~~f~~lp~~  230 (495)
T KOG2533|consen  216 --T-LVLGIVVFFFLPDN  230 (495)
T ss_pred             --H-HHHHheEEEEecCC
Confidence              1 23345566777754

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=95.46  E-value=0.018  Score=59.82  Aligned_cols=117  Identities=18%  Similarity=0.182  Sum_probs=81.3

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCC
Q 011720          269 MFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSG  348 (479)
Q Consensus       269 ~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (479)
                      .++..+++++...+..|.+++.+..|++.||  +|-|+....+...-.+.+++.         ++.       .+     
T Consensus        69 ~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k--~G~r~v~~~~~~~sa~~t~l~---------P~a-------a~-----  125 (466)
T KOG2532|consen   69 DWSSTEKGLIFSSFFWGYILGQIPGGYLADK--FGARRVFFISGLISALLTLLT---------PLA-------AS-----  125 (466)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHcCcHHHHHH--cCchHHHHHHHHHHHHHHHHH---------HHH-------HH-----
Confidence            3466678888888899999999999999999  555555444432221111111         111       01     


Q ss_pred             CCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          349 NDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       349 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      .++...+++=++.|+..+...|.+..+.++-. |+.+|++..++......+|..++.-++.
T Consensus       126 ~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~-P~~Ers~~~ail~~g~q~g~v~~mp~sg  185 (466)
T KOG2532|consen  126 IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWA-PPNERSTFIAILTAGSQLGTIITMPVSG  185 (466)
T ss_pred             hcchhhHHHHHHhHHHHhHHHhhhhceeeeEC-CHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            22335566678888888888887777777777 8999999999999888888888876654

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.39  E-value=0.14  Score=51.71  Aligned_cols=107  Identities=11%  Similarity=0.079  Sum_probs=72.7

Q ss_pred             HHHhhhhHHHHHHHHHHHhhhccCc------hhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCc---cchHhHHHHHHHHH
Q 011720           90 VTLAAGCSTYVLYAGSFLYYNHHHD------QTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTA---TRKGTYISLFWSIF  160 (479)
Q Consensus        90 ~~l~ig~~~~~i~~~~~~~~~~~~~------~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~---~~RG~~~g~~~~~~  160 (479)
                      |++.+|.+++++....+...+...+      .+.++++-++.++|.|..-+...+..+|-.++   ++|.+.+.+|+...
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            5677788877774444222221222      36789999999999999999999999877654   46788889999999


Q ss_pred             HhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHH
Q 011720          161 NMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAAL  202 (479)
Q Consensus       161 ~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l  202 (479)
                      ++|..++..+...+..      +.+|. .|.+..+..+++.+.
T Consensus        82 n~G~~~~~~~~~~i~~------~~~~~~~f~i~~~~~~~~~~~  118 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQ------NYGWFLGFGIPAIGMLLALIV  118 (372)
T ss_dssp             HHHHHHHHHCCCHHHH------CS-HHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhcccchhhcc------ccchhhhhhHHHHHHHHHHHH
Confidence            9999999877766642      24443 355544545555444

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=95.31  E-value=0.6  Score=47.61  Aligned_cols=99  Identities=17%  Similarity=0.167  Sum_probs=60.4

Q ss_pred             hhhhhhhhhhc----cchhHHHhhhhHHHHHHHHHHHhhhccC--------c---------hhhHHHHHHHHhhhhhhhh
Q 011720           75 FGILGGGVYNI----FGPRVTLAAGCSTYVLYAGSFLYYNHHH--------D---------QTFAVVAGAVLGIGAGLLW  133 (479)
Q Consensus        75 g~l~~g~l~d~----~Grk~~l~ig~~~~~i~~~~~~~~~~~~--------~---------~~~li~~R~i~G~g~g~~~  133 (479)
                      .+++.|..+||    +|||+.++......+.... ++.. .+.        +         ...++++=-+.=++.-...
T Consensus        83 vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l-~Lig-~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~q  160 (498)
T KOG0637|consen   83 VQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSL-FLIG-YAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQ  160 (498)
T ss_pred             ecccccccccccccccccccchHHHhhHHHHHHH-hhhh-hHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhh
Confidence            34677777885    8998877666443222111 1111 011        1         1233444444444555555


Q ss_pred             hhhhhhhhcCCCccchHh-HHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          134 AGQGAIMTSYPTATRKGT-YISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       134 ~~~~~~i~e~~~~~~RG~-~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      ...-+++.|.+.+.+|-+ +.+++..+..+|..+|..++.+.+
T Consensus       161 gp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~  203 (498)
T KOG0637|consen  161 GPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLG  203 (498)
T ss_pred             hhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccC
Confidence            566678888876655555 999999999999999988876443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=95.25  E-value=0.03  Score=57.41  Aligned_cols=105  Identities=16%  Similarity=0.156  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHH
Q 011720          282 YWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSY  361 (479)
Q Consensus       282 ~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (479)
                      ++...-+..+++|++.||. +|+|+....|.+.++ +...+.+        ++.          .  .+....++--.+.
T Consensus        70 y~slVY~t~i~GG~laDr~-LG~~~tI~lGail~~-iGh~~L~--------~~~----------~--~~~~gl~i~L~~I  127 (498)
T COG3104          70 YGSLVYLTPIIGGWLADRV-LGTRRTIVLGAILMA-IGHLVLA--------ISS----------V--SGPGGLYIGLALI  127 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHH-HHHHHHh--------ccc----------c--ccccHHHHHHHHH
Confidence            4444445667899999997 699987777765542 2222211        110          0  1112233333445


Q ss_pred             HhhHHHHHHHHHHHHHHhc--CCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          362 GLLDAMFQSMVYWVIGALA--DDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       362 g~~~~~~~~~~~~~~~~i~--~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      +++.+..-+....++++++  +|+| |-.+++++....++|+.++-.+.+
T Consensus       128 ~iG~Gl~K~NiS~llg~ly~~~Dpr-rD~gFt~fY~~iNiGsl~~p~i~~  176 (498)
T COG3104         128 IVGTGLFKPNISSLLGELYPKDDPR-RDGGFTLFYMGINIGSLIAPIITG  176 (498)
T ss_pred             HhccccccccHHHHHHHhcCCCCcc-cCCCccEEEEEeehHHHHHHHHHH
Confidence            5777777777778899988  6666 788999998888888888866654

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=95.03  E-value=5.2  Score=41.57  Aligned_cols=28  Identities=14%  Similarity=0.197  Sum_probs=19.5

Q ss_pred             HHHHHHhcCCchhhhHHHHHHHHHHHHHH
Q 011720          373 YWVIGALADDSETLSRYTGFYKGVQSAGA  401 (479)
Q Consensus       373 ~~~~~~i~~~~~~r~~~~~~~~~~~~~g~  401 (479)
                      .+.-+.+. ||..-++++.+.+.+.++|.
T Consensus       427 ~AFharIS-DP~IGGTYMTLLNTvSNLGG  454 (544)
T PF13000_consen  427 MAFHARIS-DPAIGGTYMTLLNTVSNLGG  454 (544)
T ss_pred             HHHHhhcc-CcccchHHHHHHHHHHhcCC
Confidence            34455666 88888888887777776554

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=94.27  E-value=0.21  Score=50.75  Aligned_cols=117  Identities=14%  Similarity=0.106  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHhhhhcccc--ccCccceeeehhhhhHHHHHHHHHhHhhh---hcccCCCCCCCcccccCCCCCchhHHH
Q 011720          282 YWGAQMLGSVGIGYVMDFS--FQSLRTRGLVGIGIVALFGTAIWGGGLAS---QLNYSHDDPPKRLDFKTSGNDFAGPFV  356 (479)
Q Consensus       282 ~~i~~~i~~~~~g~l~Dr~--~~gRr~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (479)
                      .-+..++..++.|..+||.  ++|||+..+.....+..+...+..  +.-   ....++..   .+.     ..++ +..
T Consensus        76 gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig--~aaDig~~lgd~~~---~~~-----~~ra-i~~  144 (498)
T KOG0637|consen   76 GPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIG--YAADIGLLLGDNER---KPV-----KPRA-IVL  144 (498)
T ss_pred             cccccceecccccccccccccccccccchHHHhhHHHHHHHhhhh--hHhhhhHHhcCCcc---ccc-----chHH-HHH
Confidence            3444455567789999984  689999887654443322222211  100   00011110   000     1111 111


Q ss_pred             HHHHHHhhHH---HHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          357 LYFSYGLLDA---MFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       357 ~~~~~g~~~~---~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      ..+-+.+-|-   ..|..+-+++..+..+.+++-++.+.+.++.++|+++++...+
T Consensus       145 ~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  145 FILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             HHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence            2222233333   4455577888888844444444999999999999999999885

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=94.03  E-value=8.4  Score=39.71  Aligned_cols=121  Identities=12%  Similarity=0.044  Sum_probs=66.1

Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCC
Q 011720          268 LMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTS  347 (479)
Q Consensus       268 ~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (479)
                      .+++....+..-....+..+.+.++..++.+|  +|..+...++......+ .....  ..+   +...         . 
T Consensus       288 ~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r--iGlvr~G~~~l~~q~~~-L~~~v--~~~---~~~~---------~-  349 (432)
T PF06963_consen  288 QGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR--IGLVRAGLWSLWWQWVC-LALCV--VSF---WAPG---------S-  349 (432)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcchhhHHHHHHHHHHH-HHHHH--HHH---hcCC---------C-
Confidence            34555555666556677778888888888887  67777777776544322 11111  111   1111         0 


Q ss_pred             CC-CchhHHHHHHHHH---hhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          348 GN-DFAGPFVLYFSYG---LLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       348 ~~-~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                       + .......++....   ++-=++.-...-++.|.. |.++|+.-.|+....|++.-.+.+...
T Consensus       350 -~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V-~~~~Rg~v~gvq~sl~~lf~ll~~~~~  412 (432)
T PF06963_consen  350 -PFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENV-PESERGAVSGVQNSLQSLFELLSFVLT  412 (432)
T ss_pred             -CchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccC-CHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence             1 1111111111111   111111111222455666 778999999999999999888888765

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=93.30  E-value=3.2  Score=41.09  Aligned_cols=126  Identities=9%  Similarity=-0.042  Sum_probs=77.2

Q ss_pred             hhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccchHhHHHHH
Q 011720           77 ILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLF  156 (479)
Q Consensus        77 l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~RG~~~g~~  156 (479)
                      +..-.+.|..--|+++++-.+.+++-=..++   ..++.+.+=+.-++-|...+.- .+-.+|+-+..+|+++-|..|.-
T Consensus        60 vpvFlLTD~lrYKPvivlq~ls~v~~w~~lv---~g~sV~~mQvlE~FyG~~tAaE-IAYysYIYs~Vd~~~Yqrvt~y~  135 (433)
T KOG3810|consen   60 VPVFLLTDYLRYKPVVVLQALSGVPVWIMLV---FGPSVKAMQVLEFFYGPATAAE-IAYYSYIYSKVDPEMYKRVTGYC  135 (433)
T ss_pred             HHHHHHhhhhhcceeeeeeccchhHHHHHHH---hcCCchheeeehhhcChHHHHH-HhhhheeeeecCHHHHHHHHHHh
Confidence            3455678999999999888665443111111   2467777777777777665543 24456666777899999999998


Q ss_pred             HHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCc
Q 011720          157 WSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPS  210 (479)
Q Consensus       157 ~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~  210 (479)
                      -+..-.|-.+|...+-.+...    ...+.. +-.+....+.++..+++++++|+
T Consensus       136 RaA~L~g~~~g~vlaQlLvs~----~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~  186 (433)
T KOG3810|consen  136 RAAFLVGKFVGSVLAQLLVSL----ETLSYTTLNYISLAEVTIAVLLALFLPRVK  186 (433)
T ss_pred             HHHHHHHhHHHhHHHHHHhhh----cccchhhhchhhHHHHHHHHHHHhhCCCCc
Confidence            888777777777666544211    112221 12233444556566666665544

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=92.37  E-value=1.1  Score=46.49  Aligned_cols=106  Identities=14%  Similarity=0.170  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHhhhhh-hhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcC
Q 011720           65 NTALYTTFSVFGILG-GGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSY  143 (479)
Q Consensus        65 ~~~~~~~~aig~l~~-g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~  143 (479)
                      .+.......++.++. +.+...+|-|+.+.+|...-.+   .....+.+++.|+++.+..+.++.... .++..+.++-+
T Consensus       283 ~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~---~~~~~af~~~~w~~~~~~v~~~~~~~~-~pa~~s~~s~~  358 (463)
T KOG2816|consen  283 LSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFL---QLLLFAFATETWMMFAAGVVVALAGIV-FPAIRAFASIL  358 (463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHH---HHHHHHHhccchhhhHHHHHHHhhcch-hHHHHhHHHhh
Confidence            344444556666554 4788889999988888775544   333334578899999999997776654 46777888899


Q ss_pred             CCccchHhHHHHHHHHHHhhhhhhhHHHhhh
Q 011720          144 PTATRKGTYISLFWSIFNMGGVVGGLIPFIM  174 (479)
Q Consensus       144 ~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i  174 (479)
                      .+++++|+..++......+...+++.+-..+
T Consensus       359 v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i  389 (463)
T KOG2816|consen  359 VSPEEQGKVFGIISGIEGLSGVVSPALYGNI  389 (463)
T ss_pred             cccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence            9999999999999999999999988775544

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=91.78  E-value=3  Score=42.41  Aligned_cols=63  Identities=10%  Similarity=0.008  Sum_probs=56.5

Q ss_pred             cCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhh
Q 011720          112 HHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIM  174 (479)
Q Consensus       112 ~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i  174 (479)
                      -++.|.+++.-+..|+-+|..++.....+.|-.++++|...+|.-...-++|..++++++..+
T Consensus       332 ipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  332 IPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            467899889999999999999988888888778999999999999999999999999987755

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=91.64  E-value=2.6  Score=44.11  Aligned_cols=95  Identities=8%  Similarity=0.002  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHH
Q 011720          277 LNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFV  356 (479)
Q Consensus       277 l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (479)
                      ......-.+.++.-++.+++++|  +|+-+.+..++++.. .-++.    +.    +-              .+.|.+.-
T Consensus       410 v~~a~~~~gEI~~~ffs~klI~k--iGHv~v~~lgLa~~~-~Rf~~----~S----~L--------------~n~W~vLP  464 (618)
T KOG3762|consen  410 VVSALCHAGEILFYFFSFKLIEK--IGHVNVMYLGLACNV-GRFLY----YS----YL--------------QNPWMVLP  464 (618)
T ss_pred             ehhhhhccchHHHHHHHHHHHHH--hcccceeeehhhHHH-HHHHH----HH----Hh--------------cCchheee
Confidence            34445566777777888899988  789888777765432 22222    11    01              12345556


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHH
Q 011720          357 LYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQ  397 (479)
Q Consensus       357 ~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~  397 (479)
                      +-++.|...+.....+-+|++... ||+.|+.+-++.+...
T Consensus       465 ieilqgit~aliWaa~~sY~s~va-Pp~l~at~Q~l~~g~f  504 (618)
T KOG3762|consen  465 IEILQGITHALIWAAIISYASHVA-PPGLRATAQGLLQGIF  504 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhC-CCcchHHHHHHHHHHh
Confidence            667777777666665667788888 8899888877776543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=91.64  E-value=1.4  Score=45.48  Aligned_cols=103  Identities=17%  Similarity=0.052  Sum_probs=69.3

Q ss_pred             HhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhh----hc---cCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCc
Q 011720           74 VFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYY----NH---HHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTA  146 (479)
Q Consensus        74 ig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~----~~---~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~  146 (479)
                      +|..+......+..-|+.+..+.++.++.....+..    |.   -++.+..+.--++..+-..+.+......++|++|+
T Consensus       270 ~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~  349 (433)
T PF03092_consen  270 LGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPK  349 (433)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            333333344444455677777776555422111100    10   12335556677777777888777777889999999


Q ss_pred             cchHhHHHHHHHHHHhhhhhhhHHHhhhhh
Q 011720          147 TRKGTYISLFWSIFNMGGVVGGLIPFIMNY  176 (479)
Q Consensus       147 ~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~  176 (479)
                      ...|...++..+..++|..++..++..+..
T Consensus       350 G~Egt~yall~s~~Nlg~~~s~~lg~~l~~  379 (433)
T PF03092_consen  350 GSEGTVYALLASFSNLGSSVSSTLGAFLME  379 (433)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988887754

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=91.36  E-value=21  Score=37.48  Aligned_cols=154  Identities=15%  Similarity=0.106  Sum_probs=79.3

Q ss_pred             ccchhHHHHHHHHHHhhhhhhhhhhhcCCCC---CCCChhhhhhHHHHHHH-HHHHhhhhhhhhhhccchhHHHhhhhHH
Q 011720           23 YNSPLVQVSLIGLVCFCCPGMFNALSGMGGG---GQLDPTAANNANTALYT-TFSVFGILGGGVYNIFGPRVTLAAGCST   98 (479)
Q Consensus        23 ~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~-~~aig~l~~g~l~d~~Grk~~l~ig~~~   98 (479)
                      .+..+.+.+.+++..||....|+.+-.+--.   ....+......=....+ ...+.-.+-..++|+++|++.+-+....
T Consensus        19 ~~~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~   98 (491)
T PF03219_consen   19 HRSELKKFLPLALMFFFILFNYTILRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIP   98 (491)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            4556667788888878876556643222111   00112211111110011 1111224567899999999887766554


Q ss_pred             HHHHHHHH---Hhhhc---cCch-hh---HHHHHHHHh------------------hhhhhhhh-hhhhhhhcCCCccch
Q 011720           99 YVLYAGSF---LYYNH---HHDQ-TF---AVVAGAVLG------------------IGAGLLWA-GQGAIMTSYPTATRK  149 (479)
Q Consensus        99 ~~i~~~~~---~~~~~---~~~~-~~---li~~R~i~G------------------~g~g~~~~-~~~~~i~e~~~~~~R  149 (479)
                      |..+-+.+   ++++.   .++. +.   ....+.+.|                  +-.+...+ .--.+..|..+.+|-
T Consensus        99 F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eA  178 (491)
T PF03219_consen   99 FLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEA  178 (491)
T ss_pred             HHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            44433332   22221   1111 10   011111222                  11111111 123466788899999


Q ss_pred             HhHHHHHHHHHHhhhhhhhHHHhhhhh
Q 011720          150 GTYISLFWSIFNMGGVVGGLIPFIMNY  176 (479)
Q Consensus       150 G~~~g~~~~~~~~G~~iG~~i~~~i~~  176 (479)
                      .|..+++...-++|.++++-+......
T Consensus       179 KRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  179 KRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998877665544

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF12832 MFS_1_like: MFS_1 like family

Probab=90.67  E-value=1.2  Score=33.79  Aligned_cols=43  Identities=19%  Similarity=0.093  Sum_probs=35.6

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHH
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCST   98 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~   98 (479)
                      .++...+...++......++++++|.++||+||++.+.....+
T Consensus        32 l~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   32 LSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            4566777778888888889999999999999998888776654

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=89.95  E-value=26  Score=36.23  Aligned_cols=55  Identities=13%  Similarity=0.094  Sum_probs=39.4

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhh
Q 011720          352 AGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQV  407 (479)
Q Consensus       352 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~  407 (479)
                      +..+++.+++|+.++-..+....+.++.. ++++|..+..+..+...+|.+.+..+
T Consensus       373 ~~~~~~~~l~gltnGy~~s~~m~~~p~~v-~~~e~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       373 AYFIILMLLFGFSNGYLGSLSMCLAPRQV-DPHEREVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556677888888888887777777777 66888888777777666666665444

>PF12832 MFS_1_like: MFS_1 like family

Probab=89.70  E-value=0.52  Score=35.82  Aligned_cols=39  Identities=15%  Similarity=0.029  Sum_probs=33.0

Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHHhhhhccccccCcccee
Q 011720          268 LMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRG  308 (479)
Q Consensus       268 ~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~  308 (479)
                      .+++..+.++......+..+++.++.|.+.||  .+|++..
T Consensus        30 ~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk--~~~~~~~   68 (77)
T PF12832_consen   30 LGLSPSQIGILSAIRPLIRFLAPPLWGFLADK--FGKRKVI   68 (77)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCccHHH
Confidence            56788889999888999999999999999999  5566643

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.55  E-value=4.7  Score=41.75  Aligned_cols=93  Identities=17%  Similarity=0.108  Sum_probs=63.6

Q ss_pred             hhhhhhhh---hhccchhHHHhhhhHHHHHHHHHHHhh--hcc-------------CchhhHHHHHHHHhhhhhhhhhhh
Q 011720           75 FGILGGGV---YNIFGPRVTLAAGCSTYVLYAGSFLYY--NHH-------------HDQTFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        75 g~l~~g~l---~d~~Grk~~l~ig~~~~~i~~~~~~~~--~~~-------------~~~~~li~~R~i~G~g~g~~~~~~  136 (479)
                      ++++.+.+   .+++||++.+.++.++..++.......  .-+             ++...-.+..++.|++-+...+..
T Consensus       295 ~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~  374 (461)
T KOG3098|consen  295 GGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQR  374 (461)
T ss_pred             HHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHH
Confidence            34444444   567899999999988877643332211  011             123456777899999999988888


Q ss_pred             hhhhhcCCCccchHhHHHHHHHHHHhhhhhhh
Q 011720          137 GAIMTSYPTATRKGTYISLFWSIFNMGGVVGG  168 (479)
Q Consensus       137 ~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~  168 (479)
                      ..++.+.. |++|..+.+++-.-..++..++.
T Consensus       375 ~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~  405 (461)
T KOG3098|consen  375 YVIIALLY-PDDRAQAFSLFKFYQSVASCVAF  405 (461)
T ss_pred             HHHHHHHh-cCchHHHHHHHHHHHHHHHHHHh
Confidence            88888877 78888888887766666555543

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=89.30  E-value=3.2  Score=39.35  Aligned_cols=36  Identities=14%  Similarity=0.119  Sum_probs=21.9

Q ss_pred             CchhHHHHHHHHHhhHHHHHHHHHHHHHHhc-CCchh
Q 011720          350 DFAGPFVLYFSYGLLDAMFQSMVYWVIGALA-DDSET  385 (479)
Q Consensus       350 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~-~~~~~  385 (479)
                      +.+...+..++.|++.=+.|+++-.++.|+- .+|++
T Consensus       203 ~~~~f~I~~Fl~G~f~WgiQ~ViL~lPhEyK~~~pk~  239 (267)
T PF07672_consen  203 GFAFFYIFGFLAGFFLWGIQGVILNLPHEYKGYNPKK  239 (267)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHhcChhhhcCCCcce
Confidence            3444555556777777777776665566665 34443

>PRK03612 spermidine synthase; Provisional

Probab=87.19  E-value=9.5  Score=40.44  Aligned_cols=118  Identities=12%  Similarity=0.035  Sum_probs=61.4

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHH-HHHHHHHHH--hhhccCch-hhHHHHHHHHhhhhhhhh
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCST-YVLYAGSFL--YYNHHHDQ-TFAVVAGAVLGIGAGLLW  133 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~-~~i~~~~~~--~~~~~~~~-~~li~~R~i~G~g~g~~~  133 (479)
                      ....+..++++.+++++|+.+++.+.++.-|+....-..+. +.......+  ........ ..++..-++.|+-.|+..
T Consensus        49 ~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  128 (521)
T PRK03612         49 VTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEI  128 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456678888899999999888876544444332211110 000000000  00000011 112333445555555544


Q ss_pred             hhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhh
Q 011720          134 AGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNY  176 (479)
Q Consensus       134 ~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~  176 (479)
                      +....+..+. ..++-|+..|-.+...++|.++|.++...+..
T Consensus       129 Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl  170 (521)
T PRK03612        129 PLLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLLL  170 (521)
T ss_pred             HHHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence            4433333332 12234677888888899999999988776543

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=86.70  E-value=7.9  Score=40.03  Aligned_cols=63  Identities=11%  Similarity=0.208  Sum_probs=53.7

Q ss_pred             CchhhHHHHHHHHhhhhhhhhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          113 HDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       113 ~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      +|.+..++.-++.|+..|-..+....+..+..++++|..+-.+...+..+|..+|..+++.+.
T Consensus       370 ~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~~  432 (437)
T TIGR00939       370 PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLFV  432 (437)
T ss_pred             cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466777888999999999988888888888888999999999988889999999998877553

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=85.85  E-value=4.1  Score=41.70  Aligned_cols=107  Identities=13%  Similarity=0.027  Sum_probs=65.4

Q ss_pred             HHHHHHHHHhhhhhhhhhhccch-hHHHhhhhHHHHHHHHHHHhh-hccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcC
Q 011720           66 TALYTTFSVFGILGGGVYNIFGP-RVTLAAGCSTYVLYAGSFLYY-NHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSY  143 (479)
Q Consensus        66 ~~~~~~~aig~l~~g~l~d~~Gr-k~~l~ig~~~~~i~~~~~~~~-~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~  143 (479)
                      .+......+++.++|.+.||... |.++.+......+++..+.+. ....+.+.++..-.+.|+......+...-.-.|.
T Consensus       308 ~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~  387 (480)
T KOG2563|consen  308 ALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVET  387 (480)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeee
Confidence            34455567888999999999885 666666655544432222221 1123345566666667777666666555566677


Q ss_pred             CCccchHhHHHHHHHHHHhhhhhhhHHHhhhh
Q 011720          144 PTATRKGTYISLFWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       144 ~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~  175 (479)
                      .-|..-|.-.|+..   ..|++.|-.+.....
T Consensus       388 TyPv~E~tSsGll~---~~gq~f~~~~~~~~~  416 (480)
T KOG2563|consen  388 TYPVAEGTSSGLLN---LSGQIFGVILVFIMG  416 (480)
T ss_pred             ccccCCcccceeEE---eehhHHHHHHHHHHH
Confidence            66666666666653   456667666655544

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=83.21  E-value=9.7  Score=33.27  Aligned_cols=96  Identities=13%  Similarity=0.107  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHH
Q 011720          282 YWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSY  361 (479)
Q Consensus       282 ~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (479)
                      ......+++++.+.+.++  +|.|+.+++|..+     +.++.....    +               +.....+....+.
T Consensus        46 ~Y~~~~~s~l~~P~iv~~--lg~K~sm~lg~~~-----y~~y~~~~~----~---------------~~~~~l~~~s~l~   99 (156)
T PF05978_consen   46 LYGSFAISCLFAPSIVNK--LGPKWSMILGSLG-----YAIYIASFF----Y---------------PNSYTLYPASALL   99 (156)
T ss_pred             HHHHHHHHHHhHHHHHHH--HhhHHHHHHHHHH-----HHHHHHHHH----h---------------hhHHHHHHHHHHH
Confidence            344445555666666777  6788765555432     223321110    1               2234455666677


Q ss_pred             HhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHH
Q 011720          362 GLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVA  404 (479)
Q Consensus       362 g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~  404 (479)
                      |++.+...+..-.++.+.. +.+.+++..+++-.+.+.+..++
T Consensus       100 G~~~a~lW~aqg~ylt~~s-~~~~~~~~~~ifw~i~~~s~i~G  141 (156)
T PF05978_consen  100 GFGAALLWTAQGTYLTSYS-TEETIGRNTGIFWAIFQSSLIFG  141 (156)
T ss_pred             hhhhHHhhHhhhHHHHHcC-CHHHHhhHHHHHHHHHHHHHHHH
Confidence            7777766665556777777 66777888777666655444444

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	479
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	1e-04
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	6e-04

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 46/302 (15%), Positives = 93/302 (30%), Gaps = 39/302 (12%)

Query: 56  LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAG---CSTYVLYAGSFLYYNHH 112
                   A + +   +     + G V +   PRV L AG    +  +L+ G F+ +   
Sbjct: 59  FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG-FVPWATS 117

Query: 113 HDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPF 172
                 V+   + G   G+ W   G  M  + +   +G  +S++    N+GG +  L+  
Sbjct: 118 SIAVMFVL-LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 176

Query: 173 IMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAIL-------------PPSRVIRDDGTR 219
           +      D  +       A          ++L                P      D    
Sbjct: 177 LGMAWFNDWHA-------ALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDD 229

Query: 220 CTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFY---SYQFNN------VNGLMF 270
                  +++ + I +  +  N  +  +      +N F     Y   +           F
Sbjct: 230 YNEKAEQELTAKQIFMQYVLPNKLLWYIA----IANVFVYLLRYGILDWSPTYLKEVKHF 285

Query: 271 NLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLR-TRGLVGIGIVALFGTAIWGGGLAS 329
            L         Y  A + G++  G++ D  F+  R   G+  + +V +     W     +
Sbjct: 286 ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGN 345

Query: 330 QL 331
             
Sbjct: 346 PT 347

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 34/297 (11%), Positives = 87/297 (29%), Gaps = 25/297 (8%)

Query: 55  QLDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHD 114
            L    A    +A Y  + +  I  G +      +  +  G   Y L  G+ L++     
Sbjct: 57  TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL--GAALFWPAAEI 114

Query: 115 QTFAVVAGA--VLGIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPF 172
             + +      ++  G G L       +T     +     ++L  +  + G ++  +   
Sbjct: 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174

Query: 173 IMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRVI--------------RDDGT 218
            +       +S +    ++     +   +L L++  P  +I              +    
Sbjct: 175 SLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPAL 234

Query: 219 RCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWA------SNFFYSYQFNNVNGLMFNL 272
           +  N   +K  + +  + +L R         A +       + + Y  ++          
Sbjct: 235 QSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA 294

Query: 273 RTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLAS 329
                          +G     +++   F   +      +  +AL   + + GG   
Sbjct: 295 GFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISAFAGGHVG 350

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	479
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.96
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.93
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.9
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.88
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.81
2xut_A	524	Proton/peptide symporter family protein; transport	99.77
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.74
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.72
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.54
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.5
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.48
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.46
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.36
2xut_A	524	Proton/peptide symporter family protein; transport	97.74

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.96  E-value=1.2e-28  Score=255.98  Aligned_cols=364  Identities=12%  Similarity=0.046  Sum_probs=222.6

Q ss_pred             hhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhh---------------hccCchhhHHHHHHHH
Q 011720           61 ANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYY---------------NHHHDQTFAVVAGAVL  125 (479)
Q Consensus        61 ~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~---------------~~~~~~~~li~~R~i~  125 (479)
                      .+...+..+.+..+|++++|+++||+|||++++++.+++.+........               ..++|.++++++|+++
T Consensus        57 ~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~  136 (491)
T 4gc0_A           57 LGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIG  136 (491)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHH
Confidence            3455667788889999999999999999999999999988844333210               0257899999999999


Q ss_pred             hhhhhhhhhhhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCc--ccccchhHHHHHHHHHHHHHHH
Q 011720          126 GIGAGLLWAGQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDA--ESVNDKTYIAFMCFMSAGAALS  203 (479)
Q Consensus       126 G~g~g~~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~--~~~~~~~~~i~~~l~~l~~~l~  203 (479)
                      |+|.|...+..+.+++|++|+++||+..++++.....|.++++++++.........  ..+.|+.......+..+..++.
T Consensus       137 G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (491)
T 4gc0_A          137 GIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLML  216 (491)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhh
Confidence            99999999999999999999999999999999999999999999887664322110  1122333222222222222334


Q ss_pred             HhccCCccc--c---cCCCCcccccc-------cC---CHHHHH----HH--HHHHhhchHHHHHHHHHHHhhhh----h
Q 011720          204 LAILPPSRV--I---RDDGTRCTNIK-------YS---KVSTEA----IE--ILKLFRNWKMLLLFPAAWASNFF----Y  258 (479)
Q Consensus       204 ~~~~~~~~~--~---r~d~~~~~~~~-------~~---~~~~~~----~~--~~~~~~~~r~ll~~~~~~~~~~~----~  258 (479)
                      .++.||++.  .   |.|+.+....+       ++   ..+++.    +.  ......+++.++.....+++++.    .
T Consensus       217 ~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (491)
T 4gc0_A          217 LYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVV  296 (491)
T ss_dssp             GGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHH
T ss_pred             hhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHH
Confidence            456677652  1   11111100000       00   000000    00  01112334444444433333331    0


Q ss_pred             hccccccc-cccccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCC
Q 011720          259 SYQFNNVN-GLMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDD  337 (479)
Q Consensus       259 s~~~~~~~-~~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (479)
                      .++.+.+. ....+.......+...++..+++.++.+++.||  +|||+..+.+...+.+....+ .  ...   ..   
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr--~Grr~~~~~~~~~~~~~~~~l-~--~~~---~~---  365 (491)
T 4gc0_A          297 LYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK--FGRKPLQIIGALGMAIGMFSL-G--TAF---YT---  365 (491)
T ss_dssp             HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCSHHHHHHHHHHHHHHHHHH-H--HHH---HT---
T ss_pred             HhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh--hcCcchhccchHHHHHHHHHH-H--HHH---hc---
Confidence            11101111 112233344556677888999999999999999  789998777665543222111 1  111   11   


Q ss_pred             CCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcccCcc-hhH
Q 011720          338 PPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTHKVS-LLS  416 (479)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~-~~~  416 (479)
                             ..  ........+.++...+..++.+..|.+.+|++ |.+.|+++.++...++++++.+...+.|.... ...
T Consensus       366 -------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~f-Pt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~  435 (491)
T 4gc0_A          366 -------QA--PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIF-PNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL  435 (491)
T ss_dssp             -------TC--CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSS-CTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH
T ss_pred             -------cc--chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC-CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   11  23344455555666667778888889999999 89999999999999999999888776653211 111


Q ss_pred             --HHHHH--HHHHHhhhhhhheeeeeEeccCCC
Q 011720          417 --QLIIN--WSLTTVSYPLLVVLVMLAVKDDDK  445 (479)
Q Consensus       417 --~~~i~--~~~~~~~~~~~~~~v~~~~pet~~  445 (479)
                        .+...  +.++....++..+++++++|||.+
T Consensus       436 ~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg  468 (491)
T 4gc0_A          436 VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG  468 (491)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence              11111  112222334566677899999953

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.93  E-value=2.2e-24  Score=220.95  Aligned_cols=325  Identities=14%  Similarity=0.055  Sum_probs=209.2

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhc-cCchhhHHHHHHHHhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNH-HHDQTFAVVAGAVLGIGAGLLWA  134 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~-~~~~~~li~~R~i~G~g~g~~~~  134 (479)
                      .++...+...++...+..++++++|+++||+|||+.+.++.+++.+.......... ++|++.++++|++.|++.+...+
T Consensus        59 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~  138 (451)
T 1pw4_A           59 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWP  138 (451)
T ss_dssp             TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHH
T ss_pred             ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccc
Confidence            44555667778888889999999999999999999999999988774333222000 57899999999999999999999


Q ss_pred             hhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCccc-ccchhHHHHHHHHHHHHHHHHhccCCcccc
Q 011720          135 GQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAES-VNDKTYIAFMCFMSAGAALSLAILPPSRVI  213 (479)
Q Consensus       135 ~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~-~~~~~~~i~~~l~~l~~~l~~~~~~~~~~~  213 (479)
                      +..+++.|+.|+++|++.++++.....+|.++|+.++..+...    .+ |++. +++..++.++..++..++.||++..
T Consensus       139 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~----~g~w~~~-f~~~~~~~~~~~~~~~~~~~~~~~~  213 (451)
T 1pw4_A          139 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW----FNDWHAA-LYMPAFCAILVALFAFAMMRDTPQS  213 (451)
T ss_dssp             HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH----TCCSTTC-THHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred             hHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccHHHH-HHHHHHHHHHHHHHHHhhccCCHhh
Confidence            9999999999999999999999999999999999998764322    12 3333 3343444444444444445543321


Q ss_pred             cC----CCCccccc-c---cCCHHHHHHH--HHHHhhchHHHHHHHHHHHhhhhh---hcccccccc--ccccchhhhHH
Q 011720          214 RD----DGTRCTNI-K---YSKVSTEAIE--ILKLFRNWKMLLLFPAAWASNFFY---SYQFNNVNG--LMFNLRTRGLN  278 (479)
Q Consensus       214 r~----d~~~~~~~-~---~~~~~~~~~~--~~~~~~~~r~ll~~~~~~~~~~~~---s~~~~~~~~--~~f~~~~~~l~  278 (479)
                      ++    ++.+.+.+ +   ++..+...++  ..+.+++|+++......+...+.+   ...++.+..  .+++..+.++.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  293 (451)
T 1pw4_A          214 CGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWA  293 (451)
T ss_dssp             TCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHH
T ss_pred             cCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            11    10000000 0   0000000111  123345666655544433332211   111133332  23455567788


Q ss_pred             HHHHHHHHHHHHHHhhhhcccccc--CccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHH
Q 011720          279 NVFYWGAQMLGSVGIGYVMDFSFQ--SLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFV  356 (479)
Q Consensus       279 ~~~~~i~~~i~~~~~g~l~Dr~~~--gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (479)
                      ....+++.+++.++.+++.||  +  |||+....+......+...+    +   . +.          .+  .+......
T Consensus       294 ~~~~~~~~~~~~~~~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~----~---~-~~----------~~--~~~~~~~~  351 (451)
T 1pw4_A          294 YFLYEYAGIPGTLLCGWMSDK--VFRGNRGATGVFFMTLVTIATIV----Y---W-MN----------PA--GNPTVDMI  351 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH--TSTTCHHHHHHHHHHHHHHHHHH----T---T-SC----------CT--TCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HhcCCchhHHHHHHHHHHHHHHH----H---H-Hh----------cc--cCHHHHHH
Confidence            888899999999999999999  5  78776554433221111111    1   0 11          01  12334455


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHH-HHHHHhhhc
Q 011720          357 LYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSA-GAAVAWQVD  408 (479)
Q Consensus       357 ~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~-g~~i~~~~~  408 (479)
                      ..++.|++....++..+.+..+.. |+++|+++.++++...++ |.+++..+.
T Consensus       352 ~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~g~~~~~~~~  403 (451)
T 1pw4_A          352 CMIVIGFLIYGPVMLIGLHALELA-PKKAAGTAAGFTGLFGYLGGSVAASAIV  403 (451)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHTS-CTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHh-chhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            566677777777777778889999 788899999999999999 888887654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.90  E-value=3.5e-22  Score=203.85  Aligned_cols=314  Identities=12%  Similarity=0.035  Sum_probs=197.8

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      .++...+...+....+..++.++.|+++||+|||+.+.++.+++.+..........+++++.++++|++.|++.|...++
T Consensus        58 ~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~  137 (438)
T 3o7q_A           58 LTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETA  137 (438)
T ss_dssp             CCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhh
Confidence            34556677778888889999999999999999999999999988874433321124688999999999999999999999


Q ss_pred             hhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCccc----------------cc------chh-HHHH
Q 011720          136 QGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAES----------------VN------DKT-YIAF  192 (479)
Q Consensus       136 ~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~----------------~~------~~~-~~i~  192 (479)
                      ..+++.|+.|+++|++.++++.....+|.++|+.+...+.....  +.                ++      |+. +.+.
T Consensus       138 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  215 (438)
T 3o7q_A          138 ANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV--PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMII  215 (438)
T ss_dssp             HHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS--CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccccccccccCCcchhhhhhhhhhhhHHHHHHHH
Confidence            99999999999999999999999999999999998877652211  11                00      432 2222


Q ss_pred             HHHHHHHHHHHHhccCCcccccCCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhh----hhhcccccc-cc
Q 011720          193 MCFMSAGAALSLAILPPSRVIRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNF----FYSYQFNNV-NG  267 (479)
Q Consensus       193 ~~l~~l~~~l~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~----~~s~~~~~~-~~  267 (479)
                      ..+..+..++.++.+.|+..++++++    +++++.++.   ..+.+++|+++......+....    ...+. +.+ ..
T Consensus       216 ~~~~~~~~~~~~~~~~p~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  287 (438)
T 3o7q_A          216 VAIVLLVALLIMLTKFPALQSDNHSD----AKQGSFSAS---LSRLARIRHWRWAVLAQFCYVGAQTACWSYL-IRYAVE  287 (438)
T ss_dssp             HHHHHHHHHHHHHCCCCCCTTTCCCC----SSTTSHHHH---HHHHTTCSHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCccccccccc----ccccchhhh---HHHHHhChHHHHHHHHHHHHHHHHHHHHHHH-HHHhhh
Confidence            33333322333333323222111111    111222222   3345566666554433222211    11222 444 32


Q ss_pred             --ccccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCccccc
Q 011720          268 --LMFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFK  345 (479)
Q Consensus       268 --~~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (479)
                        .+++..+.++......++.+++.++.+++.||  +|||+....+..... +...+    ...    .           
T Consensus       288 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r--~~~~~~~~~~~~~~~-~~~~~----~~~----~-----------  345 (438)
T 3o7q_A          288 EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR--FAPHKVLAAYALIAM-ALCLI----SAF----A-----------  345 (438)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHH-HHHHH----HHH----C-----------
T ss_pred             ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHH-HHHHH----HHH----c-----------
Confidence              24456667777778899999999999999999  678886655543321 11111    110    1           


Q ss_pred             CCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          346 TSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       346 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                         +... .....++.+++.+...+..+.+..+.+ ++ +++++.++.. ...++.+++..+.
T Consensus       346 ---~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~-~~~~g~~~~~~~~  401 (438)
T 3o7q_A          346 ---GGHV-GLIALTLCSAFMSIQYPTIFSLGIKNL-GQ-DTKYGSSFIV-MTIIGGGIVTPVM  401 (438)
T ss_dssp             ---CHHH-HHHHHHHHHHHHTTHHHHHHHHHHSSC-GG-GHHHHHHHHH-HTTHHHHHHHHHH
T ss_pred             ---CCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhc-cc-cccchhhHHH-HHHHHHHHHHHHH
Confidence               1111 223335666777777777777777877 33 3677776655 4556666654443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.88  E-value=2.9e-21  Score=200.41  Aligned_cols=328  Identities=13%  Similarity=-0.021  Sum_probs=195.9

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhc-cchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNI-FGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWA  134 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~-~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~  134 (479)
                      .++...+...++...+..++++++|+++|| +|||+++.++.+++.+.  ..+.. .++|.+.++++|++.|+|.+...+
T Consensus        51 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~  127 (491)
T 4aps_A           51 ITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLG--HIVLA-LPFGASALFGSIILIIIGTGFLKP  127 (491)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH--HHHHH-SCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH--HHHHH-HhhhHHHHHHHHHHHHHHHHhccc
Confidence            456667777888888899999999999999 89999999999988763  33332 468899999999999999999999


Q ss_pred             hhhhhhhcCCCccc--hHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCcc
Q 011720          135 GQGAIMTSYPTATR--KGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSR  211 (479)
Q Consensus       135 ~~~~~i~e~~~~~~--RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~  211 (479)
                      ...++++|+.|+++  |++.++++....++|..+|+.+...+..+      .+|+ .+.+..+..+++.++.++..|+..
T Consensus       128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  201 (491)
T 4aps_A          128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA------AGYHVAFSLAAIGMFIGLLVYYFGGKKTL  201 (491)
T ss_dssp             HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------SCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence            99999999999988  77888889999999999999998766432      3343 233333333333333333322111


Q ss_pred             cccCCCCcccccccCCHHHHH------------------------------------------------HHHHHH-hhch
Q 011720          212 VIRDDGTRCTNIKYSKVSTEA------------------------------------------------IEILKL-FRNW  242 (479)
Q Consensus       212 ~~r~d~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~-~~~~  242 (479)
                      .++.+..+.+. +++..++..                                                ++.... ..++
T Consensus       202 ~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (491)
T 4aps_A          202 DPHYLRPTDPL-APEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHL  280 (491)
T ss_dssp             CSCCSCCSCCC-SHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             cccccCCCCcc-ccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            11000000000 000000000                                                000000 0111


Q ss_pred             H---HHHHHHHHHHhhhhhhcc---ccccccc--cccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceee-----
Q 011720          243 K---MLLLFPAAWASNFFYSYQ---FNNVNGL--MFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGL-----  309 (479)
Q Consensus       243 r---~ll~~~~~~~~~~~~s~~---~~~~~~~--~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~-----  309 (479)
                      +   .+.+..........+...   ++.+...  ..+....++.....+++.+++.++.+++.||  +|||+...     
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r--~~~r~~~~~~~~~  358 (491)
T 4aps_A          281 RVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA--WKKNQPSSPTKFA  358 (491)
T ss_dssp             -CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH--TTTC---CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH--HhccCCCchHHHH
Confidence            1   111111111111111111   1112211  1222345666667788888889999999999  67886544     


Q ss_pred             ehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHH
Q 011720          310 VGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRY  389 (479)
Q Consensus       310 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~  389 (479)
                      .+...+. +.+.+    +........+      + .+  .+.......+++.+++.+...+..+.+..+.. |+++|+++
T Consensus       359 ~~~~~~~-~~~~~----~~~~~~~~~~------~-~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-p~~~~g~~  423 (491)
T 4aps_A          359 VGLMFAG-LSFLL----MAIPGALYGT------S-GK--VSPLWLVGSWALVILGEMLISPVGLSVTTKLA-PKAFNSQM  423 (491)
T ss_dssp             HHHHHHH-HHHTT----THHHHHHCCC------C-TT--CCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHT-TTTCSSSS
T ss_pred             HHHHHHH-HHHHH----HHHHHHhcCC------C-CC--ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC-CHHHHHHH
Confidence            2322211 11111    1010001100      0 11  23445566677888888888888888999999 78889999


Q ss_pred             HHHHHHHHHHHHHHHhhhccc
Q 011720          390 TGFYKGVQSAGAAVAWQVDTH  410 (479)
Q Consensus       390 ~~~~~~~~~~g~~i~~~~~~~  410 (479)
                      .++++...++|.+++..+.+.
T Consensus       424 ~g~~~~~~~~g~~i~~~~~~~  444 (491)
T 4aps_A          424 MSMWFLSSSVGSALNAQLVTL  444 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999887653

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.81  E-value=6.1e-20  Score=183.64  Aligned_cols=309  Identities=15%  Similarity=0.063  Sum_probs=194.1

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAG  135 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~  135 (479)
                      .++...+...+.......+++++.|+++||+|||+.+.++.++..+......   .+++.+.++++|++.|++.+...+.
T Consensus        32 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~l~g~~~~~~~~~  108 (375)
T 2gfp_A           32 VREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV---TTSSLTVLIAASAMQGMGTGVGGVM  108 (375)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHhhhhh
Confidence            3455667778888888999999999999999999999999988777333322   2468899999999999999999999


Q ss_pred             hhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchh-HHHHHHHHHHHHHHHHhccCCccccc
Q 011720          136 QGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKT-YIAFMCFMSAGAALSLAILPPSRVIR  214 (479)
Q Consensus       136 ~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~-~~i~~~l~~l~~~l~~~~~~~~~~~r  214 (479)
                      ...++.|+.|+++|++.++++.....+|..+|+.++..+..      ..+|+. +.+..++..+..++..+..||++.++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (375)
T 2gfp_A          109 ARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT------MWNWRACYLFLLVLCAGVTFSMARWMPETRPVD  182 (375)
T ss_dssp             HHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC------HHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH------hccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC
Confidence            99999999999999999999999999999999999876532      134542 32222323332222233344443221


Q ss_pred             CCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhhh---hhcccccccc--ccccchhhhHHHHHHHHHHHHH
Q 011720          215 DDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFF---YSYQFNNVNG--LMFNLRTRGLNNVFYWGAQMLG  289 (479)
Q Consensus       215 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~---~s~~~~~~~~--~~f~~~~~~l~~~~~~i~~~i~  289 (479)
                      ++++    +.+++.    +   +.+++|+++......+.....   .....+.+..  .+++..+.++.....+++.+++
T Consensus       183 ~~~~----~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~  251 (375)
T 2gfp_A          183 APRT----RLLTSY----K---TLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFG  251 (375)
T ss_dssp             CCCC----CTTTCS----T---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             cccc----cHHHHH----H---HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence            1110    111111    1   223345544433332222211   1111233332  2234445677777788999999


Q ss_pred             HHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHhhHHHHH
Q 011720          290 SVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGLLDAMFQ  369 (479)
Q Consensus       290 ~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  369 (479)
                      .++.+++.||  .+||  ...+...+.........  ...              ..+  .+.+......++.+++.+..+
T Consensus       252 ~~~~~~l~~r--~~~~--~~~~~~~~~~~~~~~~~--~~~--------------~~~--~~~~~~~~~~~l~g~~~~~~~  309 (375)
T 2gfp_A          252 AWFAGRPNKR--FSTL--MWQSVICCLLAGLLMWI--PDW--------------FGV--MNVWTLLVPAALFFFGAGMLF  309 (375)
T ss_dssp             HHHHHTTTTH--HHHH--HHHHHHHHHHTSSSSSH--HHH--------------HHH--HHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHHH--Hhh--------------hcc--ccHHHHHHHHHHHHHHHHHhh
Confidence            9999999998  3442  22222110000000000  000              001  122334455566777777778


Q ss_pred             HHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhc
Q 011720          370 SMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVD  408 (479)
Q Consensus       370 ~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  408 (479)
                      +..+.+..+.. | ++|+++.++.+..+++|..++-.+.
T Consensus       310 ~~~~~~~~~~~-p-~~~g~~~g~~~~~~~~g~~~~~~~~  346 (375)
T 2gfp_A          310 PLATSGAMEPF-P-FLAGTAGALVGGLQNIGSGVLASLS  346 (375)
T ss_dssp             STTHHHHHTHH-H-HHHHHHHHHHHHHHHHHHHCCSTTC
T ss_pred             HHHHHHHHHhC-C-cccchHHHHHHHHHHHHHHHHHHHH
Confidence            87788888888 5 8899999999988888877765544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.77  E-value=1.9e-17  Score=173.09  Aligned_cols=116  Identities=15%  Similarity=0.118  Sum_probs=97.1

Q ss_pred             ChhhhhhHHHHHHHHHHHhhhhhhhhhhcc-chhHHHhhhhHHHHHHHHHHHhhhccC-chhhHHHHHHHHhhhhhhhhh
Q 011720           57 DPTAANNANTALYTTFSVFGILGGGVYNIF-GPRVTLAAGCSTYVLYAGSFLYYNHHH-DQTFAVVAGAVLGIGAGLLWA  134 (479)
Q Consensus        57 ~~~~~~~~~~~~~~~~aig~l~~g~l~d~~-Grk~~l~ig~~~~~i~~~~~~~~~~~~-~~~~li~~R~i~G~g~g~~~~  134 (479)
                      ++...+...++...+..++++++|+++||+ |||+++.++.+++.+..  .+.. .++ +.+.++++|++.|++.+...+
T Consensus        52 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~  128 (524)
T 2xut_A           52 RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGH--AFLA-IFEHSVQGFYTGLFLIALGSGGIKP  128 (524)
T ss_dssp             TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHH--HHHH-HTSSCHHHHHHHHHHHHHHHHTTHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH--HHHH-HhcccHHHHHHHHHHHHHhccccch
Confidence            344566667788888889999999999999 99999999998877633  2222 356 899999999999999999999


Q ss_pred             hhhhhhhcCCCccchHhHHHH---HHHHHHhhhhhhhHHHhhhh
Q 011720          135 GQGAIMTSYPTATRKGTYISL---FWSIFNMGGVVGGLIPFIMN  175 (479)
Q Consensus       135 ~~~~~i~e~~~~~~RG~~~g~---~~~~~~~G~~iG~~i~~~i~  175 (479)
                      ...+++.|+.|+++|++..+.   +....++|..+|+.+...+.
T Consensus       129 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  172 (524)
T 2xut_A          129 LVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL  172 (524)
T ss_dssp             HHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH
T ss_pred             hHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999877666   88888999999998877664

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.74  E-value=5.3e-18  Score=172.59  Aligned_cols=314  Identities=13%  Similarity=-0.006  Sum_probs=167.5

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCch-hhHHHHHHHHhhhhhhhhhhh
Q 011720           58 PTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQ-TFAVVAGAVLGIGAGLLWAGQ  136 (479)
Q Consensus        58 ~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~-~~li~~R~i~G~g~g~~~~~~  136 (479)
                      +...+...+....+..+++++.|+++||+|||+.++++..++.+..........++.. ..++.+|++.|++.|..+++.
T Consensus        42 ~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  121 (417)
T 2cfq_A           42 KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAG  121 (417)
T ss_dssp             TTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4445667778888889999999999999999999999887665422222111111111 124567778777776655544


Q ss_pred             hhhhhcCCCc--cchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHhccCCcccc
Q 011720          137 GAIMTSYPTA--TRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLAILPPSRVI  213 (479)
Q Consensus       137 ~~~i~e~~~~--~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~~~~~~~~~  213 (479)
                      .....++.++  ++|++..+.......+|..+|+.+...+..       .+|+ .+++..+..++ .++..++.+|++.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-------~~~~~~f~~~~~~~~~-~~~~~~~~~~~~~~  193 (417)
T 2cfq_A          122 APAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-------INNQFVFWLGSGCALI-LAVLLFFAKTDAPS  193 (417)
T ss_dssp             HHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-------HCSHHHHTTTTTTTTT-HHHHSCSSCCCCSC
T ss_pred             HHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-------hchhHHHHHHHHHHHH-HHHHHHHcCccccc
Confidence            4444444433  456766777766677888888877765532       1232 22221111112 22222333433211


Q ss_pred             c--CCCCcccccccCCHHHHHHHHHHHhhchHHHHHHHHHHHhhhhh-hc--ccccccccccc-----chhhhHHHHHHH
Q 011720          214 R--DDGTRCTNIKYSKVSTEAIEILKLFRNWKMLLLFPAAWASNFFY-SY--QFNNVNGLMFN-----LRTRGLNNVFYW  283 (479)
Q Consensus       214 r--~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~~-s~--~~~~~~~~~f~-----~~~~~l~~~~~~  283 (479)
                      +  +++.+.+..++.+    .++..+.+++|+++......+.....+ .+  .++.+....++     ....++......
T Consensus       194 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  269 (417)
T 2cfq_A          194 SATVANAVGANHSAFS----LKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGE  269 (417)
T ss_dssp             SSCSSSSSSSCCCCCC----HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHH
T ss_pred             cccccccccccccccc----HHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHH
Confidence            1  1110000011111    223334556676544333222111111 00  01222211121     222345555667


Q ss_pred             HHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHh
Q 011720          284 GAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGL  363 (479)
Q Consensus       284 i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  363 (479)
                      ++.+++.++.+++.||  +|||+....+..... +....    +.    +           .   .+........++.++
T Consensus       270 ~~~~~~~~~~g~l~dr--~g~~~~l~~~~~~~~-~~~~~----~~----~-----------~---~~~~~~~~~~~l~~~  324 (417)
T 2cfq_A          270 LLNASIMFFAPLIINR--IGGKNALLLAGTIMS-VRIIG----SS----F-----------A---TSALEVVILKTLHMF  324 (417)
T ss_dssp             HHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHH-HHHHH----HT----T-----------C---CSHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHHHH--hcHHHHHHHHHHHHH-HHHHH----HH----H-----------h---ccHHHHHHHHHHHHH
Confidence            7888899999999999  688886554433221 11111    10    0           0   111222333344555


Q ss_pred             hHHHHHHHHHHHHHHhcCCchhhhHHHHH-HHHHHHHHHHHHhhhcc
Q 011720          364 LDAMFQSMVYWVIGALADDSETLSRYTGF-YKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       364 ~~~~~~~~~~~~~~~i~~~~~~r~~~~~~-~~~~~~~g~~i~~~~~~  409 (479)
                      .....++..+.+++|.+ |++.|+++.++ ++..+++|..++..+..
T Consensus       325 ~~~~~~~~~~~~~~~~~-p~~~~g~~~g~~~~~~~~lg~~~gp~l~G  370 (417)
T 2cfq_A          325 EVPFLLVGCFKYITSQF-EVRFSATIYLVCFCFFKQLAMIFMSVLAG  370 (417)
T ss_dssp             HHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHTTTHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHhHHHHHhhhhHH
Confidence            55566666677889999 88899998888 47777888877766554

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.72  E-value=1.4e-07  Score=95.71  Aligned_cols=142  Identities=13%  Similarity=-0.049  Sum_probs=102.6

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhcc--chhHHHhhhhHHHHHHHHHHHhhhcc--CchhhHHHHHHHHhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIF--GPRVTLAAGCSTYVLYAGSFLYYNHH--HDQTFAVVAGAVLGIGAGL  131 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~--Grk~~l~ig~~~~~i~~~~~~~~~~~--~~~~~li~~R~i~G~g~g~  131 (479)
                      .++...+...+....+..++.++.+++.||+  |||+.+.++.++...  .+.+.....  .+.+.+++.-++.|++.+.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  362 (451)
T 1pw4_A          285 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT--IATIVYWMNPAGNPTVDMICMIVIGFLIYG  362 (451)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH--HHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH--HHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence            3455555566666777788889999999999  999999888776552  122211112  3677788888999999888


Q ss_pred             hhhhhhhhhhcCCCccchHhHHHHHHHHHHh-hhhhhhHHHhhhhhccCCcccccch-hHHHHHHHHHHHHHHHHh
Q 011720          132 LWAGQGAIMTSYPTATRKGTYISLFWSIFNM-GGVVGGLIPFIMNYHRTDAESVNDK-TYIAFMCFMSAGAALSLA  205 (479)
Q Consensus       132 ~~~~~~~~i~e~~~~~~RG~~~g~~~~~~~~-G~~iG~~i~~~i~~~~~~~~~~~~~-~~~i~~~l~~l~~~l~~~  205 (479)
                      .++....++.|..|+++||+.+|++.....+ |..+|+.+...+..+      .++. .+.+..++.+++.++.++
T Consensus       363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~------~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF------FGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------SCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCcHHHHHHHHHHHHHHHHHHHH
Confidence            8888888999999999999999999999999 999999887766432      2232 344444444554444443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.54  E-value=3.4e-07  Score=92.48  Aligned_cols=136  Identities=11%  Similarity=-0.012  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCC
Q 011720           65 NTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYP  144 (479)
Q Consensus        65 ~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~  144 (479)
                      .++......++.++.++++||+|||+.+.++.++..+.   .+.....++.+.+++..++.|++.+...+....++.|..
T Consensus       265 ~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  341 (417)
T 2cfq_A          265 TTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVR---IIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF  341 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH---HHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH---HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            33444455677889999999999999998887766542   222223456777888888888888776666778999999


Q ss_pred             CccchHhHHHH-HHHHHHhhhhhhhHHHhhhhhccCCcccccc-hhHHHHHHHHHHHHHHHHhccCC
Q 011720          145 TATRKGTYISL-FWSIFNMGGVVGGLIPFIMNYHRTDAESVND-KTYIAFMCFMSAGAALSLAILPP  209 (479)
Q Consensus       145 ~~~~RG~~~g~-~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~-~~~~i~~~l~~l~~~l~~~~~~~  209 (479)
                      |++.||+..++ +.....+|..+|+.+...+..+      .++ ..|.+..++.+++.++.+++.|+
T Consensus       342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~------~g~~~~f~~~~~~~l~~~~~~~~~~~~  402 (417)
T 2cfq_A          342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES------IGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH------SHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh------cCcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            99999999998 5777788999999887755321      222 23444455555555544444443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.50  E-value=3.6e-07  Score=93.93  Aligned_cols=146  Identities=9%  Similarity=-0.002  Sum_probs=87.4

Q ss_pred             HHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhc-cCchhhHHHHHHHHhhhhhhh-hhhhhhhhhcC
Q 011720           66 TALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNH-HHDQTFAVVAGAVLGIGAGLL-WAGQGAIMTSY  143 (479)
Q Consensus        66 ~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~-~~~~~~li~~R~i~G~g~g~~-~~~~~~~i~e~  143 (479)
                      ........++.++++.+.||+|||+.++.+.....+.......... ..+.+..++.-++...+.+.. .+....+.+|.
T Consensus       319 ~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~  398 (491)
T 4gc0_A          319 IIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEI  398 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            3444555667789999999999999999887766553332221111 112222222222222222222 23455788999


Q ss_pred             CCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCccccc-chhHHHHHHHHHHHHHHHHhccCCcc
Q 011720          144 PTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVN-DKTYIAFMCFMSAGAALSLAILPPSR  211 (479)
Q Consensus       144 ~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~-~~~~~i~~~l~~l~~~l~~~~~~~~~  211 (479)
                      .|.+.|++.+|+......+|..+++.+...+........... ...++++.++.+++.++..++.||.|
T Consensus       399 fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk  467 (491)
T 4gc0_A          399 FPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK  467 (491)
T ss_dssp             SCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence            999999999999998888888887766443321100000111 22456667777777766667778765

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.48  E-value=1.3e-06  Score=88.03  Aligned_cols=118  Identities=14%  Similarity=0.106  Sum_probs=90.0

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCC
Q 011720          269 MFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSG  348 (479)
Q Consensus       269 ~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (479)
                      +.+..+.++....+.++..++.++.|++.||  +|||+..+.+.....+.....+.  ..                ..  
T Consensus        57 g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr--~g~r~~l~~~~~~~~~~~~~~~~--~~----------------~~--  114 (438)
T 3o7q_A           57 TLTNFQAGLIQSAFYFGYFIIPIPAGILMKK--LSYKAGIITGLFLYALGAALFWP--AA----------------EI--  114 (438)
T ss_dssp             CCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHH--HH----------------HT--
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH--hcchHHHHHHHHHHHHHHHHHHh--cc----------------cc--
Confidence            3455677888888999999999999999999  78999877765543222111110  00                01  


Q ss_pred             CCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhcc
Q 011720          349 NDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       349 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  409 (479)
                      ++++...+..++.|++.+...+....++++.+ ++++|+++.++.+...++|..++..+..
T Consensus       115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~  174 (438)
T 3o7q_A          115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLG-PESSGHFRLNLAQTFNSFGAIIAVVFGQ  174 (438)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHc-CchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677778899999999988889999999 7899999999999999999999987664

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.46  E-value=1.8e-06  Score=85.32  Aligned_cols=116  Identities=13%  Similarity=-0.038  Sum_probs=86.8

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCC
Q 011720          269 MFNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSG  348 (479)
Q Consensus       269 ~f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (479)
                      +.+..+.++....+.++..++.++.|++.||  +|||+....+.....+.. ...    ..                .  
T Consensus        31 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr--~g~r~~~~~~~~~~~~~~-~~~----~~----------------~--   85 (375)
T 2gfp_A           31 NVREGAVQSVMGAYLLTYGVSQLFYGPISDR--VGRRPVILVGMSIFMLAT-LVA----VT----------------T--   85 (375)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT--SCCCCCCHHHHHHHHHHH-HHH----HH----------------H--
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCchhHHHHHHHHHHHH-HHH----HH----------------h--
Confidence            3455567888888999999999999999999  789988776654432111 111    00                0  


Q ss_pred             CCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhccc
Q 011720          349 NDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGAAVAWQVDTH  410 (479)
Q Consensus       349 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~  410 (479)
                      +++.......++.|++.+...+....++.|.+ |+++|+++.++.+...++|..++..+...
T Consensus        86 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  146 (375)
T 2gfp_A           86 SSLTVLIAASAMQGMGTGVGGVMARTLPRDLY-ERTQLRHANSLLNMGILVSPLLAPLIGGL  146 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            22344566677889999888888888999999 67889999999999999999888777653

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.36  E-value=1e-06  Score=90.58  Aligned_cols=137  Identities=9%  Similarity=-0.023  Sum_probs=89.5

Q ss_pred             HHHHHHHHHhhhhhhhhhhccchhHHHh-----hhhHHHHHHHHHHHhh------hccCchhhHHHHHHHHhhhhhhhhh
Q 011720           66 TALYTTFSVFGILGGGVYNIFGPRVTLA-----AGCSTYVLYAGSFLYY------NHHHDQTFAVVAGAVLGIGAGLLWA  134 (479)
Q Consensus        66 ~~~~~~~aig~l~~g~l~d~~Grk~~l~-----ig~~~~~i~~~~~~~~------~~~~~~~~li~~R~i~G~g~g~~~~  134 (479)
                      +.......++.++.+++.||+|||+...     ++.++..+........      ....+.+.+++.-++.|++.+...+
T Consensus       326 ~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  405 (491)
T 4aps_A          326 SLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISP  405 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTT
T ss_pred             ccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhH
Confidence            3444555666788899999999986654     5554443311111111      0013567788889999999999888


Q ss_pred             hhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccC
Q 011720          135 GQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILP  208 (479)
Q Consensus       135 ~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~  208 (479)
                      ....++.|..|+++||+.+|++.....+|..+|+.+...+...     +. +..|.+...+.++..++.+++.+
T Consensus       406 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~  473 (491)
T 4aps_A          406 VGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----SE-VAYFSYFGLGSVVLGIVLVFLSK  473 (491)
T ss_dssp             HHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----ST-THHHHHTHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999999999999999999999887655321     12 23444444444444444444443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.74  E-value=0.0001  Score=76.15  Aligned_cols=115  Identities=15%  Similarity=-0.030  Sum_probs=80.0

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHhhhhcccccc-CccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCC
Q 011720          270 FNLRTRGLNNVFYWGAQMLGSVGIGYVMDFSFQ-SLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSG  348 (479)
Q Consensus       270 f~~~~~~l~~~~~~i~~~i~~~~~g~l~Dr~~~-gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (479)
                      ++..+.++....+.++..++.++.|++.||  + |||+....+.....+ ...+    ..+    .          .   
T Consensus        51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr--~~g~r~~~~~~~~~~~~-~~~~----~~~----~----------~---  106 (524)
T 2xut_A           51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADR--FFGKYNTILWLSLIYCV-GHAF----LAI----F----------E---  106 (524)
T ss_dssp             TTTTTHHHHHHHHHHHHHHTHHHHHHHHTT--SSCSHHHHHHHHHHHHH-HHHH----HHH----T----------S---
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHH-HHHH----HHH----h----------c---
Confidence            455667888888899999999999999999  6 899876655433221 1111    100    0          0   


Q ss_pred             CCchhHHHHHHHHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHH---HHHHHHHHHHHHhhhcc
Q 011720          349 NDFAGPFVLYFSYGLLDAMFQSMVYWVIGALADDSETLSRYTGF---YKGVQSAGAAVAWQVDT  409 (479)
Q Consensus       349 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~---~~~~~~~g~~i~~~~~~  409 (479)
                      .+....++..++.|++.+...+....++++.+ |+++|+++.+.   +....++|.+++..+..
T Consensus       107 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~  169 (524)
T 2xut_A          107 HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQF-DQSNKSLAQKAFDMFYFTINFGSFFASLSMP  169 (524)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTC-STTTTTHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             ccHHHHHHHHHHHHHhccccchhHHHHHHHHc-CccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            13444556667788888888888888999999 67778665555   77777888877766553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	479
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.92
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.75
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.71
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.63

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=3.3e-24  Score=216.18  Aligned_cols=326  Identities=15%  Similarity=0.077  Sum_probs=198.5

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhh-hccCchhhHHHHHHHHhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYY-NHHHDQTFAVVAGAVLGIGAGLLWA  134 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~-~~~~~~~~li~~R~i~G~g~g~~~~  134 (479)
                      .++...+...++...+.+++++++|+++||+|||+++.++.++..+........ ...++.+.+++.|++.|++.|..++
T Consensus        56 ~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  135 (447)
T d1pw4a_          56 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWP  135 (447)
T ss_dssp             TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhh
Confidence            345566777888999999999999999999999999999998877643332211 1235789999999999999999999


Q ss_pred             hhhhhhhcCCCccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCccc--
Q 011720          135 GQGAIMTSYPTATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRV--  212 (479)
Q Consensus       135 ~~~~~i~e~~~~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~--  212 (479)
                      +...++.|+.|+++||+.++++.....+|..+|+.+........   .+|++. +++...+..+..++.+++.++.+.  
T Consensus       136 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~---~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (447)
T d1pw4a_         136 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF---NDWHAA-LYMPAFCAILVALFAFAMMRDTPQSC  211 (447)
T ss_dssp             HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT---CCSTTC-THHHHHHHHHHHHHHHHHCCCSSTTT
T ss_pred             HHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh---hccccc-chhhhhhHHHHHHHHHHhcccchhhc
Confidence            99999999999999999999999999999999998766543221   223333 333333333333333333332221  


Q ss_pred             c--cCCCCccccc--ccCCHHHH---HHHHH-HHhhchHHHHHHHHHHHhhh-hhh--cccccccc--ccccchhhhHHH
Q 011720          213 I--RDDGTRCTNI--KYSKVSTE---AIEIL-KLFRNWKMLLLFPAAWASNF-FYS--YQFNNVNG--LMFNLRTRGLNN  279 (479)
Q Consensus       213 ~--r~d~~~~~~~--~~~~~~~~---~~~~~-~~~~~~r~ll~~~~~~~~~~-~~s--~~~~~~~~--~~f~~~~~~l~~  279 (479)
                      .  +.++.+.+..  .++..+++   .+... +.+++|.++......+.... .+.  ...+.+..  .+++..+.++..
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (447)
T d1pw4a_         212 GLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAY  291 (447)
T ss_dssp             CCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHH
T ss_pred             ccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhh
Confidence            1  1111100000  00000000   01112 23345555444433332221 111  11133332  234555667777


Q ss_pred             HHHHHHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHH
Q 011720          280 VFYWGAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYF  359 (479)
Q Consensus       280 ~~~~i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (479)
                      ....++.+++.++.|++.||  .+||++.......+.....+.    ... . ..          ..  .+.....+..+
T Consensus       292 ~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~-~-~~----------~~--~~~~~~~~~~~  351 (447)
T d1pw4a_         292 FLYEYAGIPGTLLCGWMSDK--VFRGNRGATGVFFMTLVTIAT----IVY-W-MN----------PA--GNPTVDMICMI  351 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--TSTTCHHHHHHHHHHHHHHHH----HHT-T-SC----------CT--TCHHHHHHHHH
T ss_pred             hcchhhhhhhhhhhhhhhhh--ccccccccccchhHHHHHHHH----HHH-H-hc----------cc--ccHHHHHHHHH
Confidence            78899999999999999999  566665444332221111111    111 0 00          11  23344555666


Q ss_pred             HHHhhHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHH-HHHhh
Q 011720          360 SYGLLDAMFQSMVYWVIGALADDSETLSRYTGFYKGVQSAGA-AVAWQ  406 (479)
Q Consensus       360 ~~g~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~g~-~i~~~  406 (479)
                      ..|++.....+..+.+..|.+ |++.|+++.|+.+...+++. .++..
T Consensus       352 ~~g~~~~~~~~~~~~~~~~~~-p~~~~g~~~g~~~~~~~~~g~~~~~~  398 (447)
T d1pw4a_         352 VIGFLIYGPVMLIGLHALELA-PKKAAGTAAGFTGLFGYLGGSVAASA  398 (447)
T ss_dssp             HHHHHHTHHHHHHHHHHHHTS-CTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677777777777788888999 78889999999888877644 33433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=5.5e-18  Score=166.54  Aligned_cols=317  Identities=12%  Similarity=-0.055  Sum_probs=173.3

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhh-ccCchhhHHHHHHHHhhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYN-HHHDQTFAVVAGAVLGIGAGLLWA  134 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~-~~~~~~~li~~R~i~G~g~g~~~~  134 (479)
                      .++...+...++......+++++.|+++||+|||+.++++..+..+......... ........+..+++.|.+.+....
T Consensus        40 ~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (417)
T d1pv7a_          40 ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFN  119 (417)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhccccccc
Confidence            3466677778888888899999999999999999999998887766443333221 112233456677777777766554


Q ss_pred             hhhhhhhcCCC--ccchHhHHHHHHHHHHhhhhhhhHHHhhhhhccCCcccccchhHHHHHHHHHHHHHHHHhccCCccc
Q 011720          135 GQGAIMTSYPT--ATRKGTYISLFWSIFNMGGVVGGLIPFIMNYHRTDAESVNDKTYIAFMCFMSAGAALSLAILPPSRV  212 (479)
Q Consensus       135 ~~~~~i~e~~~--~~~RG~~~g~~~~~~~~G~~iG~~i~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~l~~~~~~~~~~  212 (479)
                      .......+..+  .+++.+..+........+..+|+.++..+...      ..+..+........+..++.++..++++.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (417)
T d1pv7a_         120 AGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI------NNQFVFWLGSGCALILAVLLFFAKTDAPS  193 (417)
T ss_dssp             THHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHHHHHHHHHHHSSCCCSCS
T ss_pred             chhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc------cccccccchhhHHHHHHHHHHHHhccccc
Confidence            44444333333  23455566777777788888888877655321      11222333233333333333444444332


Q ss_pred             ccCCCCcccccccCCHHHHHHHHHHHhhchHHHH---HHHHHHH-hhhhhhcccccccc-----ccccchhhhHHHHHHH
Q 011720          213 IRDDGTRCTNIKYSKVSTEAIEILKLFRNWKMLL---LFPAAWA-SNFFYSYQFNNVNG-----LMFNLRTRGLNNVFYW  283 (479)
Q Consensus       213 ~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~ll---~~~~~~~-~~~~~s~~~~~~~~-----~~f~~~~~~l~~~~~~  283 (479)
                      .++++++.+..+++...+..   .+..++++...   ....... ........ ..+..     ...+....+.......
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (417)
T d1pv7a_         194 SATVANAVGANHSAFSLKLA---LELFRQPKLWFLSLYVIGVSCTYDVFDQQF-ANFFTSFFATGEQGTRVFGYVTTMGE  269 (417)
T ss_dssp             SSCSSHHHHSCCCCCCHHHH---HHHTTSSHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhccccccccc---ccccccccccchhhhhHHHHHHHHhhhccc-cccccccccccccchhhhcccccccc
Confidence            21111111111111111111   12222222111   1111111 11111110 11111     1112223345566678


Q ss_pred             HHHHHHHHHhhhhccccccCccceeeehhhhhHHHHHHHHHhHhhhhcccCCCCCCCcccccCCCCCchhHHHHHHHHHh
Q 011720          284 GAQMLGSVGIGYVMDFSFQSLRTRGLVGIGIVALFGTAIWGGGLASQLNYSHDDPPKRLDFKTSGNDFAGPFVLYFSYGL  363 (479)
Q Consensus       284 i~~~i~~~~~g~l~Dr~~~gRr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  363 (479)
                      ++..++..+.+++.||  .+||+....+.....+. ...    +.    +           .   ++.+......++.|+
T Consensus       270 ~~~~~~~~~~~~l~~r--~~~~~~~~~~~~~~~~~-~~~----~~----~-----------~---~~~~~~~~~~~l~g~  324 (417)
T d1pv7a_         270 LLNASIMFFAPLIINR--IGGKNALLLAGTIMSVR-IIG----SS----F-----------A---TSALEVVILKTLHMF  324 (417)
T ss_dssp             HHHHHHHTTHHHHHHH--HCHHHHHHHHHHHHHHH-HHH----HH----T-----------C---CCHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhhcc--cccccchhhhHHHHHHh-hhc----cc----c-----------c---cccchhhHHHHHHHH
Confidence            8888999999999999  67887665554332111 111    11    0           1   233455666777888


Q ss_pred             hHHHHHHHHHHHHHHhcCCchhhhHHHHHH-HHHHHHHHHHHhhhc
Q 011720          364 LDAMFQSMVYWVIGALADDSETLSRYTGFY-KGVQSAGAAVAWQVD  408 (479)
Q Consensus       364 ~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~-~~~~~~g~~i~~~~~  408 (479)
                      ..+...+..+.++.+.. |++.|+++.++. ....++|.+++..+.
T Consensus       325 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~i~~~~~  369 (417)
T d1pv7a_         325 EVPFLLVGCFKYITSQF-EVRFSATIYLVCFCFFKQLAMIFMSVLA  369 (417)
T ss_dssp             HHHHHHHHHHHHHHHHS-CGGGHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHC-CHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888999999 889999999875 455667777765544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=6.9e-08  Score=92.94  Aligned_cols=134  Identities=10%  Similarity=-0.028  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHhhhccCchhhHHHHHHHHhhhhhhhhhhhhhhhhcCC
Q 011720           65 NTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLYYNHHHDQTFAVVAGAVLGIGAGLLWAGQGAIMTSYP  144 (479)
Q Consensus        65 ~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~~~~~~~~~~li~~R~i~G~g~g~~~~~~~~~i~e~~  144 (479)
                      .+.......++.++.+.+.||+|||+.+.++.++..+....  . ...++.+.+++.-++.|++.+..++....++.|..
T Consensus       265 ~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  341 (417)
T d1pv7a_         265 TTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIG--S-SFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF  341 (417)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHH--H-HTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhc--c-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            33444555667789999999999999999998877663222  2 24578899999999999999999999999999999


Q ss_pred             CccchHhHHHHHH-HHHHhhhhhhhHHHhhhhhccCCcccccc-hhHHHHHHHHHHHHHHHHhcc
Q 011720          145 TATRKGTYISLFW-SIFNMGGVVGGLIPFIMNYHRTDAESVND-KTYIAFMCFMSAGAALSLAIL  207 (479)
Q Consensus       145 ~~~~RG~~~g~~~-~~~~~G~~iG~~i~~~i~~~~~~~~~~~~-~~~~i~~~l~~l~~~l~~~~~  207 (479)
                      |+++||+..++.. ....+|..+|+.+...+..+      .++ ..+++..++.++..++.+++.
T Consensus       342 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~------~g~~~~~~~~~~~~~~~~~~~~~~l  400 (417)
T d1pv7a_         342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES------IGFQGAYLVLGLVALGFTLISVFTL  400 (417)
T ss_dssp             CGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999854 55678999998887655321      233 244454555555544444443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=1.5e-07  Score=92.41  Aligned_cols=120  Identities=13%  Similarity=-0.072  Sum_probs=85.2

Q ss_pred             CChhhhhhHHHHHHHHHHHhhhhhhhhhhccchhHHHhhhhHHHHHHHHHHHh-h-hccCchhhHHHHHHHHhhhhhhhh
Q 011720           56 LDPTAANNANTALYTTFSVFGILGGGVYNIFGPRVTLAAGCSTYVLYAGSFLY-Y-NHHHDQTFAVVAGAVLGIGAGLLW  133 (479)
Q Consensus        56 ~~~~~~~~~~~~~~~~~aig~l~~g~l~d~~Grk~~l~ig~~~~~i~~~~~~~-~-~~~~~~~~li~~R~i~G~g~g~~~  133 (479)
                      .+........++......++.++++++.||++||+..........+....... . ....+.+..++.-++.|++.+...
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  361 (447)
T d1pw4a_         282 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPV  361 (447)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHH
T ss_pred             cccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence            34555666666777777888999999999999876544443322221122221 1 124567777888888899988888


Q ss_pred             hhhhhhhhcCCCccchHhHHHHHHHHHHh-hhhhhhHHHhhhh
Q 011720          134 AGQGAIMTSYPTATRKGTYISLFWSIFNM-GGVVGGLIPFIMN  175 (479)
Q Consensus       134 ~~~~~~i~e~~~~~~RG~~~g~~~~~~~~-G~~iG~~i~~~i~  175 (479)
                      +....+..|..|++.||+..|+.....++ |.++++.+...+.
T Consensus       362 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~  404 (447)
T d1pw4a_         362 MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV  404 (447)
T ss_dssp             HHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999998877666 5677787765553