Citrus Sinensis ID: 011731

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGNGDRYDNDRYEGRYGNDDQNGYGREREYGYGYRDDDRSSRNGDSYSRDGDRYGRDYEDRYSRDVYRDDDYRGRSRSVDAYQDGSSRNSDDGQLSSRGLERKFSEQNIGAPPSYEEAVSESRSPVHSERDGESSASAVPPPGPPGVLPPPARLGASSPPAAPGAASPPPAPGSSSPPAAPGASSPPASHNPNQATNTFDNFTSANQEAVAPDEFDPRGSVQASASMPTAAALATSNSAEIDLLGSLSDSFSSNALAIMPSVPASSTTEAEAFSNSGAASIYPASQSASNVVNQVILFSNL
cHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccHccccHHHHHHHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcHHHHHHHHHcccEcccccEccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccHHHHHHHccccccHHHHccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccc
MKKAFDQTFRDIKRGVNKKVLKVPGIEqkvldatsnepwgphgtLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSyqistlsdfqyidssgrdqgsnvrkKSQSLVALVNDKERIIEVRQKAAANRDkfrnttaggmyrpgsysssggngdrydndryegrygnddqngygrereygygyrdddrssrngdsysrdgdrygrdyedrysrdvyrdddyrgrsrsvdayqdgssrnsddgqlssrglerkfseqnigappsyeeavsesrspvhserdgessasavpppgppgvlppparlgassppaapgaaspppapgsssppaapgassppashnpnqatntfdnftsanqeavapdefdprgsvqasasmpTAAALATSNSAEIDLLgslsdsfssnalaimpsvpasstteaeafsnsgaasiypasqsasnvvnqVILFSNL
mkkafdqtfrdikrgvnkkvlkvpgIEQKVLdatsnepwgpHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSgrdqgsnvrkksqslvalvndkeriIEVRqkaaanrdkfrnttaggmyrpgsysssggngdrYDNDRYEgrygnddqngygrereygygyrdddrssrngdsysrdgdrygrdyedrysrdvyrdddyrgrsrsvdayqdgssrnsddgqlssrglerkfseqnigappsyeeavsesrSPVHSERDGEssasavpppgpPGVLPPPARLGASSPPAAPGAASPPPAPGSSSPPAAPGASSPPASHNPNQATNTFDNFTSANQEAVAPDEFDPRGSVQASASMPTAAALATSNSAEIDLLGSLSDSFSSNALAIMPSVPASSTTEAEAFSNSGAASiypasqsasnvvnQVILFSNL
MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGNGDRYDNDRYEGRYGNDDQngygrereygygyrdddrssrngdsysrdgdrygrdyedrysrdvyrdddyrgrsrsvdAYQDGSSRNSDDGQLSSRGLERKFSEQNIGAPPSYEEAVSESRSPVHSERDGEssasavpppgppgvlppparlgassppaapgaaspppapgsssppaapgassppasHNPNQATNTFDNFTSANQEAVAPDEFDPRGSVQasasmptaaalatsNSAEIDllgslsdsfssnalAIMPSVPASSTTEAEAFSNSGAASIYPASQSASNVVNQVILFSNL
***********IKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYI********************LV*****II***********************************************************************************************************************************************************************************************************************************************************************************************************************************QVIL****
************KRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQK**************************************************************************************************************************************************************************************************************************************************************************************************************************************
MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSS*************SLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGNGDRYDNDRYEGRYGNDDQNGYGREREYGYGYRD**************GDRYGRDYEDRYSRDVYRDDDYRGRSRSVDA*****************GLERKFSEQN**********************************GPPGVLPPPARL***********************************HNPNQATNTFDNFTSANQEAVAPDEFDPRGSVQASASMPTAAALATSNSAEIDLLGSLSDSFSSNALAIMPSV*************SGAASIYPASQSASNVVNQVILFSNL
****FDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNT***************************************************************************************************************************************************************************************************************************************************************************************************************************
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MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGNGDRYDNDRYEGRYGNDDQNGYGREREYGYGYRDDDRSSRNGDSYSRDGDRYGRDYEDRYSRDVYRDDDYRGRSRSVDAYQDGSSRNSDDGQLSSRGLERKFSEQNIGAPPSYEEAVSESRSPVHSERDGESSASAVPPPGPPGVLPPPARLGASSPPAAPGAASPPPAPGSSSPPAAPGASSPPASHNPNQATNTFDNFTSANQEAVAPDEFDPRGSVQASASMPTAAALATSNSAEIDLLGSLSDSFSSNALAIMPSVPASSTTEAEAFSNSGAASIYPASQSASNVVNQVILFSNL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query478 2.2.26 [Sep-21-2011]
Q67YI9 895 Clathrin interactor EPSIN yes no 0.895 0.478 0.581 1e-138
Q93YP4 1024 Clathrin interactor EPSIN no no 0.815 0.380 0.567 1e-133
Q8VY07560 Clathrin interactor EPSIN no no 0.476 0.407 0.493 4e-62
O95208 641 Epsin-2 OS=Homo sapiens G no no 0.332 0.248 0.477 7e-40
Q9Z1Z3 583 Epsin-2 OS=Rattus norvegi yes no 0.332 0.272 0.477 1e-39
Q8CHU3 595 Epsin-2 OS=Mus musculus G yes no 0.332 0.267 0.477 1e-39
Q80VP1 575 Epsin-1 OS=Mus musculus G no no 0.311 0.259 0.476 6e-39
Q9Y6I3 576 Epsin-1 OS=Homo sapiens G no no 0.311 0.258 0.476 7e-39
O88339 575 Epsin-1 OS=Rattus norvegi no no 0.311 0.259 0.476 7e-39
Q91W69 636 Epsin-3 OS=Mus musculus G no no 0.322 0.242 0.467 9e-39
>sp|Q67YI9|EPN2_ARATH Clathrin interactor EPSIN 2 OS=Arabidopsis thaliana GN=EPSIN2 PE=1 SV=1 Back     alignment and function desciption
 Score =  491 bits (1264), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 283/487 (58%), Positives = 334/487 (68%), Gaps = 59/487 (12%)

Query: 1   MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQ 60
           MKK F QT RD+KR VNKKVLKVPG+EQKVLDATSNEPWGPHG+LLAD+AQA+RNYHEYQ
Sbjct: 1   MKKVFGQTVRDLKREVNKKVLKVPGVEQKVLDATSNEPWGPHGSLLADLAQASRNYHEYQ 60

Query: 61  MIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS 120
           +I+ VIWKR++DTGKNWRHVYKALTVLEY+V HGSERVID+IRE +YQISTLSDFQYIDS
Sbjct: 61  LIMVVIWKRLSDTGKNWRHVYKALTVLEYMVGHGSERVIDEIRERAYQISTLSDFQYIDS 120

Query: 121 SGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGN 180
            GRDQGSNVRKKSQSLVALVNDKERI EVRQKAAANRDK+R++  GGMY+P     SGG 
Sbjct: 121 GGRDQGSNVRKKSQSLVALVNDKERIAEVRQKAAANRDKYRSSAPGGMYKP-----SGGY 175

Query: 181 GDRYDNDRYEGRYGNDDQ--NGYGREREYGYGYRDDDRSSRNGDSYSRDGDRYGRDYEDR 238
           GD+YD       YG+ D+  + YGRERE  YGYRDDDR+       SRDGDR+ RD EDR
Sbjct: 176 GDKYD-------YGSRDEERSSYGRERE--YGYRDDDRN-------SRDGDRHSRDSEDR 219

Query: 239 YSRDVYRDDDYRGRSRSVDAY----QDGSSRNSDDGQLSSR---------------GLER 279
           Y RD  RDDDYRGRSRSVD Y    +       DDG  SSR               GL+R
Sbjct: 220 YGRDGNRDDDYRGRSRSVDNYGSRGRSSEREREDDGHSSSRGSGARADDNSQDGRGGLQR 279

Query: 280 KFSEQNIGAPPSYEEAVSESRSPVHSERDGESSASAVPPPGPPGVLPPPARLGASSPPAA 339
           KFSEQNIGAPPSYEEAVS+SRSPV+SERDG  +         P V  P A        AA
Sbjct: 280 KFSEQNIGAPPSYEEAVSDSRSPVYSERDGGET---------PQVTAPGAASPPPPQVAA 330

Query: 340 PGAASPPPAPGSSSPPAAPGASSPPASHNPNQATNTFDNFTSANQEAVAPDEFDPRGSVQ 399
           P AASPP    +++       ++   + +P+Q   TFD F   +  +  P  +     V 
Sbjct: 331 PEAASPPTGTNTAN------TTATFVNESPSQKVETFDEFDPRSAFSAGPPAYASTDGVT 384

Query: 400 ASASMPTAAALATSNSAEIDLLGSLSDSFSSNALAIMPSVPASSTTEAEAFSNSGAASIY 459
           A  ++ + +A  TSNS E+DLLGSL+D FSSNALAI+P+   S   E    +N+G A  +
Sbjct: 385 APPTVTSMSAPTTSNSVEMDLLGSLADVFSSNALAIVPA--DSIYVETNGQANAGPAPSF 442

Query: 460 PASQSAS 466
             SQ ++
Sbjct: 443 STSQPST 449
May have a role in transport via clathrin-coated vesicles from the trans-Golgi network to endosomes. Stimulates clathrin assembly (By similarity). Binds to membranes enriched in phosphatidylinositol 3-phosphate (PtdIns(3)P). Plays an important role in protein trafficking.
Arabidopsis thaliana (taxid: 3702)
>sp|Q93YP4|EPN3_ARATH Clathrin interactor EPSIN 3 OS=Arabidopsis thaliana GN=EPSIN3 PE=2 SV=1 Back     alignment and function description
>sp|Q8VY07|EPN1_ARATH Clathrin interactor EPSIN 1 OS=Arabidopsis thaliana GN=EPSIN1 PE=1 SV=1 Back     alignment and function description
>sp|O95208|EPN2_HUMAN Epsin-2 OS=Homo sapiens GN=EPN2 PE=1 SV=3 Back     alignment and function description
>sp|Q9Z1Z3|EPN2_RAT Epsin-2 OS=Rattus norvegicus GN=Epn2 PE=1 SV=1 Back     alignment and function description
>sp|Q8CHU3|EPN2_MOUSE Epsin-2 OS=Mus musculus GN=Epn2 PE=1 SV=1 Back     alignment and function description
>sp|Q80VP1|EPN1_MOUSE Epsin-1 OS=Mus musculus GN=Epn1 PE=1 SV=3 Back     alignment and function description
>sp|Q9Y6I3|EPN1_HUMAN Epsin-1 OS=Homo sapiens GN=EPN1 PE=1 SV=2 Back     alignment and function description
>sp|O88339|EPN1_RAT Epsin-1 OS=Rattus norvegicus GN=Epn1 PE=1 SV=1 Back     alignment and function description
>sp|Q91W69|EPN3_MOUSE Epsin-3 OS=Mus musculus GN=Epn3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query478
255583860 902 Epsin-2, putative [Ricinus communis] gi| 0.891 0.472 0.655 1e-154
356567296 988 PREDICTED: clathrin interactor EPSIN 3-l 0.897 0.434 0.617 1e-150
359478084 942 PREDICTED: clathrin interactor EPSIN 2-l 0.878 0.445 0.648 1e-148
297745158 804 unnamed protein product [Vitis vinifera] 0.878 0.522 0.648 1e-147
357501475 969 Epsin-like protein [Medicago truncatula] 0.884 0.436 0.618 1e-146
356527459 922 PREDICTED: clathrin interactor EPSIN 2-l 0.786 0.407 0.652 1e-141
356534510 877 PREDICTED: clathrin interactor EPSIN 3-l 0.887 0.483 0.585 1e-139
30689266 895 clathrin interactor EPSIN 2 [Arabidopsis 0.895 0.478 0.581 1e-136
79324901 646 clathrin interactor EPSIN 2 [Arabidopsis 0.895 0.662 0.581 1e-136
62318943 895 hypothetical protein [Arabidopsis thalia 0.895 0.478 0.579 1e-136
>gi|255583860|ref|XP_002532681.1| Epsin-2, putative [Ricinus communis] gi|223527594|gb|EEF29709.1| Epsin-2, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 324/494 (65%), Positives = 366/494 (74%), Gaps = 68/494 (13%)

Query: 1   MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQ 60
           MKK FDQT RDIKR VNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQ
Sbjct: 1   MKKVFDQTVRDIKREVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQ 60

Query: 61  MIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS 120
           MI+ VIWKRINDTGKNWRHVYK LTVLEYLVA+GSERVID+IREH+YQISTLSDFQYIDS
Sbjct: 61  MIMAVIWKRINDTGKNWRHVYKGLTVLEYLVANGSERVIDEIREHAYQISTLSDFQYIDS 120

Query: 121 SGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGN 180
           SGRDQGSNVRKKSQSLV LVNDKERIIEVRQKAAANR+KFRNT+AGGMY+PGSY      
Sbjct: 121 SGRDQGSNVRKKSQSLVVLVNDKERIIEVRQKAAANREKFRNTSAGGMYKPGSY------ 174

Query: 181 GDRYDNDRYEGRYG--NDDQNGYGREREYGYGYRDDDRSSRNGDSYSRDGDRYGRDYEDR 238
           GDRYD++RYEGRYG  ++D+NGYG  RE  Y YRDDDR  + GDSYSRDGDRYGRD E+R
Sbjct: 175 GDRYDDERYEGRYGSRDEDRNGYGYGRERDYNYRDDDRYGKYGDSYSRDGDRYGRDNEER 234

Query: 239 YSRDVYRDDDYRGRSRSVDAYQDGS-SRNS-----DDGQLSSRG--------------LE 278
           YSRD YRDDDY+GRSRS+D Y  GS SR+S     DDGQ SSRG              LE
Sbjct: 235 YSRDGYRDDDYQGRSRSIDDY--GSRSRSSDRGADDDGQSSSRGSGAKADDQSQDGRRLE 292

Query: 279 RKFSEQNIGAPPSYEEAVSESRSPVHSERDGESSASAVPPPGPPGVLPPPARLGASSPPA 338
           RKFSEQNI APPSYEEAVSESRSP HSER+GE+SA++V     PGV              
Sbjct: 293 RKFSEQNI-APPSYEEAVSESRSPAHSERNGETSAASV-----PGV-------------- 332

Query: 339 APGAASPPPAPGSSSPPAAPGASSPPASHNPNQATNTF-DNFTSANQEAVAPDEFDPRG- 396
                         S P AP A+SP AS+ P+QA   F    +SA +E    DEFDPR  
Sbjct: 333 --------------SSPPAPRAASPAASNIPSQAATGFGTTMSSAGEEVEVADEFDPRCP 378

Query: 397 SVQASASMPTAAALATSNSAEIDLLGSLSDSFSSNALAIMPSVPASSTTEAEAFSNSGAA 456
              +  +   +AA   S++AE+DLLGSLSDSF++N LAIMP V A +T+E +  +N    
Sbjct: 379 GSASPTTAAASAAATVSSNAEMDLLGSLSDSFAANPLAIMP-VSAVATSEVDTQTNF-PG 436

Query: 457 SIYPASQSASNVVN 470
           S + A+Q  S+V+N
Sbjct: 437 STFSATQPPSSVMN 450

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356567296|ref|XP_003551857.1| PREDICTED: clathrin interactor EPSIN 3-like [Glycine max] Back     alignment and taxonomy information
>gi|359478084|ref|XP_002267689.2| PREDICTED: clathrin interactor EPSIN 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297745158|emb|CBI39150.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357501475|ref|XP_003621026.1| Epsin-like protein [Medicago truncatula] gi|124360685|gb|ABN08674.1| Epsin, N-terminal; ENTH/VHS [Medicago truncatula] gi|355496041|gb|AES77244.1| Epsin-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356527459|ref|XP_003532328.1| PREDICTED: clathrin interactor EPSIN 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356534510|ref|XP_003535796.1| PREDICTED: clathrin interactor EPSIN 3-like [Glycine max] Back     alignment and taxonomy information
>gi|30689266|ref|NP_850386.1| clathrin interactor EPSIN 2 [Arabidopsis thaliana] gi|30689274|ref|NP_850387.1| clathrin interactor EPSIN 2 [Arabidopsis thaliana] gi|42571203|ref|NP_973675.1| clathrin interactor EPSIN 2 [Arabidopsis thaliana] gi|75116590|sp|Q67YI9.1|EPN2_ARATH RecName: Full=Clathrin interactor EPSIN 2; AltName: Full=EPSIN-related 2 gi|51970954|dbj|BAD44169.1| unknown protein [Arabidopsis thaliana] gi|51971100|dbj|BAD44242.1| unknown protein [Arabidopsis thaliana] gi|62319865|dbj|BAD93910.1| hypothetical protein [Arabidopsis thaliana] gi|62319867|dbj|BAD93914.1| hypothetical protein [Arabidopsis thaliana] gi|110740368|dbj|BAF02079.1| hypothetical protein [Arabidopsis thaliana] gi|330255122|gb|AEC10216.1| clathrin interactor EPSIN 2 [Arabidopsis thaliana] gi|330255123|gb|AEC10217.1| clathrin interactor EPSIN 2 [Arabidopsis thaliana] gi|330255124|gb|AEC10218.1| clathrin interactor EPSIN 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79324901|ref|NP_001031535.1| clathrin interactor EPSIN 2 [Arabidopsis thaliana] gi|51970932|dbj|BAD44158.1| unnamed protein product [Arabidopsis thaliana] gi|330255125|gb|AEC10219.1| clathrin interactor EPSIN 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|62318943|dbj|BAD94036.1| hypothetical protein [Arabidopsis thaliana] gi|110739531|dbj|BAF01674.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query478
TAIR|locus:2040981 895 AT2G43160 [Arabidopsis thalian 0.399 0.213 0.783 5.6e-103
TAIR|locus:2081167 1024 AT3G59290 [Arabidopsis thalian 0.389 0.181 0.757 3e-98
TAIR|locus:2181920560 AT5G11710 [Arabidopsis thalian 0.410 0.35 0.547 7.8e-60
UNIPROTKB|E9PBC1484 EPN2 "Epsin-2" [Homo sapiens ( 0.382 0.378 0.452 9.1e-44
UNIPROTKB|O95208 641 EPN2 "Epsin-2" [Homo sapiens ( 0.382 0.285 0.452 2.3e-42
UNIPROTKB|F1MYK3 639 EPN2 "Uncharacterized protein" 0.382 0.286 0.447 2.2e-41
UNIPROTKB|E7EMC3499 EPN2 "Uncharacterized protein" 0.382 0.366 0.452 4.6e-40
UNIPROTKB|F6PQP6410 EPN2 "Epsin-2" [Homo sapiens ( 0.382 0.446 0.452 4.6e-40
UNIPROTKB|I3L2B2 577 EPN2 "Epsin-2" [Homo sapiens ( 0.382 0.317 0.452 5.3e-40
DICTYBASE|DDB_G0291512 686 epnA "epsin" [Dictyostelium di 0.380 0.265 0.449 7e-40
TAIR|locus:2040981 AT2G43160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 801 (287.0 bits), Expect = 5.6e-103, Sum P(3) = 5.6e-103
 Identities = 156/199 (78%), Positives = 174/199 (87%)

Query:     1 MKKAFDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQ 60
             MKK F QT RD+KR VNKKVLKVPG+EQKVLDATSNEPWGPHG+LLAD+AQA+RNYHEYQ
Sbjct:     1 MKKVFGQTVRDLKREVNKKVLKVPGVEQKVLDATSNEPWGPHGSLLADLAQASRNYHEYQ 60

Query:    61 MIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS 120
             +I+ VIWKR++DTGKNWRHVYKALTVLEY+V HGSERVID+IRE +YQISTLSDFQYIDS
Sbjct:    61 LIMVVIWKRLSDTGKNWRHVYKALTVLEYMVGHGSERVIDEIRERAYQISTLSDFQYIDS 120

Query:   121 SGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTTAGGMYRPGSYSSSGGN 180
              GRDQGSNVRKKSQSLVALVNDKERI EVRQKAAANRDK+R++  GGMY+P     SGG 
Sbjct:   121 GGRDQGSNVRKKSQSLVALVNDKERIAEVRQKAAANRDKYRSSAPGGMYKP-----SGGY 175

Query:   181 GDRYD-NDRYEGR--YGND 196
             GD+YD   R E R  YG +
Sbjct:   176 GDKYDYGSRDEERSSYGRE 194
GO:0005634 "nucleus" evidence=ISM
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005543 "phospholipid binding" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0030276 "clathrin binding" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2081167 AT3G59290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2181920 AT5G11710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E9PBC1 EPN2 "Epsin-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O95208 EPN2 "Epsin-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MYK3 EPN2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E7EMC3 EPN2 "Uncharacterized protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F6PQP6 EPN2 "Epsin-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3L2B2 EPN2 "Epsin-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291512 epnA "epsin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.4__2478__AT2G43160.3
annotation not avaliable (891 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
cd03571123 cd03571, ENTH_epsin, ENTH domain, Epsin family; Th 4e-72
pfam01417124 pfam01417, ENTH, ENTH domain 1e-67
smart00273127 smart00273, ENTH, Epsin N-terminal homology (ENTH) 1e-48
cd00197115 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain 1e-19
PRK12323 700 PRK12323, PRK12323, DNA polymerase III subunits ga 3e-07
PRK07003 830 PRK07003, PRK07003, DNA polymerase III subunits ga 4e-07
PRK07764 824 PRK07764, PRK07764, DNA polymerase III subunits ga 1e-06
PRK07003 830 PRK07003, PRK07003, DNA polymerase III subunits ga 2e-06
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 5e-06
PRK07764 824 PRK07764, PRK07764, DNA polymerase III subunits ga 6e-06
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 6e-06
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 7e-06
PRK07764 824 PRK07764, PRK07764, DNA polymerase III subunits ga 8e-06
PLN02983274 PLN02983, PLN02983, biotin carboxyl carrier protei 8e-06
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 9e-06
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 2e-05
PRK07764 824 PRK07764, PRK07764, DNA polymerase III subunits ga 2e-05
PRK14951618 PRK14951, PRK14951, DNA polymerase III subunits ga 2e-05
PRK07764 824 PRK07764, PRK07764, DNA polymerase III subunits ga 3e-05
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 3e-05
PRK07994 647 PRK07994, PRK07994, DNA polymerase III subunits ga 4e-05
pfam07174297 pfam07174, FAP, Fibronectin-attachment protein (FA 6e-05
pfam04652315 pfam04652, DUF605, Vta1 like 7e-05
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 7e-05
PRK07003 830 PRK07003, PRK07003, DNA polymerase III subunits ga 8e-05
PRK12323 700 PRK12323, PRK12323, DNA polymerase III subunits ga 1e-04
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 1e-04
PRK07764 824 PRK07764, PRK07764, DNA polymerase III subunits ga 1e-04
PRK14951618 PRK14951, PRK14951, DNA polymerase III subunits ga 1e-04
PRK14950585 PRK14950, PRK14950, DNA polymerase III subunits ga 1e-04
pfam07174297 pfam07174, FAP, Fibronectin-attachment protein (FA 2e-04
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 2e-04
PRK14965576 PRK14965, PRK14965, DNA polymerase III subunits ga 2e-04
TIGR01642 509 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la 2e-04
pfam0139160 pfam01391, Collagen, Collagen triple helix repeat 3e-04
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 4e-04
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 5e-04
PLN02983274 PLN02983, PLN02983, biotin carboxyl carrier protei 5e-04
PRK14951618 PRK14951, PRK14951, DNA polymerase III subunits ga 5e-04
pfam04652315 pfam04652, DUF605, Vta1 like 5e-04
pfam05518753 pfam05518, Totivirus_coat, Totivirus coat protein 5e-04
PRK07003 830 PRK07003, PRK07003, DNA polymerase III subunits ga 6e-04
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 6e-04
PHA03378 991 PHA03378, PHA03378, EBNA-3B; Provisional 8e-04
cd03564117 cd03564, ANTH_AP180_CALM, ANTH domain family; comp 8e-04
PRK07003 830 PRK07003, PRK07003, DNA polymerase III subunits ga 0.001
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 0.001
PHA03378 991 PHA03378, PHA03378, EBNA-3B; Provisional 0.001
pfam10152147 pfam10152, DUF2360, Predicted coiled-coil domain-c 0.001
PRK00404141 PRK00404, tatB, sec-independent translocase; Provi 0.001
PRK09111598 PRK09111, PRK09111, DNA polymerase III subunits ga 0.001
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 0.002
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 0.002
PRK07994 647 PRK07994, PRK07994, DNA polymerase III subunits ga 0.002
pfam04652315 pfam04652, DUF605, Vta1 like 0.002
pfam0139160 pfam01391, Collagen, Collagen triple helix repeat 0.002
PRK12800 574 PRK12800, fliF, flagellar MS-ring protein; Reviewe 0.002
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 0.002
PRK14954620 PRK14954, PRK14954, DNA polymerase III subunits ga 0.002
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.003
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 0.003
PHA03378991 PHA03378, PHA03378, EBNA-3B; Provisional 0.003
PHA03378 991 PHA03378, PHA03378, EBNA-3B; Provisional 0.003
pfam06346160 pfam06346, Drf_FH1, Formin Homology Region 1 0.003
COG5373 931 COG5373, COG5373, Predicted membrane protein [Func 0.003
pfam07651278 pfam07651, ANTH, ANTH domain 0.003
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.004
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.004
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 0.004
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 0.004
pfam0139160 pfam01391, Collagen, Collagen triple helix repeat 0.004
pfam0139160 pfam01391, Collagen, Collagen triple helix repeat 0.004
PRK09111598 PRK09111, PRK09111, DNA polymerase III subunits ga 0.004
PHA03291401 PHA03291, PHA03291, envelope glycoprotein I; Provi 0.004
PRK11892 464 PRK11892, PRK11892, pyruvate dehydrogenase subunit 0.004
>gnl|CDD|239627 cd03571, ENTH_epsin, ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information 
 Score =  223 bits (571), Expect = 4e-72
 Identities = 76/121 (62%), Positives = 100/121 (82%)

Query: 26  IEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALT 85
            E KV +ATSN+PWGP GTL+A+IA+AT NY E+Q I+ ++WKR+ND GKNWRHVYKALT
Sbjct: 2   AELKVREATSNDPWGPSGTLMAEIARATYNYVEFQEIMSMLWKRLNDKGKNWRHVYKALT 61

Query: 86  VLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKER 145
           +LEYL+ +GSERV+DD RE+ Y I TL DFQYID +G+DQG NVR+K++ ++ L+ D ER
Sbjct: 62  LLEYLLKNGSERVVDDARENLYIIRTLKDFQYIDENGKDQGINVREKAKEILELLEDDER 121

Query: 146 I 146
           +
Sbjct: 122 L 122

A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are universal components of the machinery for clathrin-mediated membrane budding. Length = 123
>gnl|CDD|216488 pfam01417, ENTH, ENTH domain Back     alignment and domain information
>gnl|CDD|214594 smart00273, ENTH, Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>gnl|CDD|238118 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor Back     alignment and domain information
>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies) Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional Back     alignment and domain information
>gnl|CDD|239622 cd03564, ANTH_AP180_CALM, ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional Back     alignment and domain information
>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360) Back     alignment and domain information
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional Back     alignment and domain information
>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies) Back     alignment and domain information
>gnl|CDD|183757 PRK12800, fliF, flagellar MS-ring protein; Reviewed Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional Back     alignment and domain information
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional Back     alignment and domain information
>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1 Back     alignment and domain information
>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown] Back     alignment and domain information
>gnl|CDD|219498 pfam07651, ANTH, ANTH domain Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies) Back     alignment and domain information
>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies) Back     alignment and domain information
>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional Back     alignment and domain information
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 478
KOG2056336 consensus Equilibrative nucleoside transporter pro 100.0
KOG2057499 consensus Predicted equilibrative nucleoside trans 100.0
cd03571123 ENTH_epsin ENTH domain, Epsin family; The epsin (E 100.0
PF01417125 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E 100.0
smart00273127 ENTH Epsin N-terminal homology (ENTH) domain. 100.0
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 99.93
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 99.89
cd03564117 ANTH_AP180_CALM ANTH domain family; composed of ad 99.78
PF07651280 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an 98.76
KOG1924 1102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 98.53
KOG0251491 consensus Clathrin assembly protein AP180 and rela 98.47
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 98.21
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 97.91
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 97.85
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 97.83
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 97.77
cd03561133 VHS VHS domain family; The VHS domain is present i 97.74
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 97.63
KOG1924 1102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 97.44
KOG1087470 consensus Cytosolic sorting protein GGA2/TOM1 [Int 97.09
KOG2199462 consensus Signal transducing adaptor protein STAM/ 96.27
KOG3671569 consensus Actin regulatory protein (Wiskott-Aldric 91.87
KOG1086 594 consensus Cytosolic sorting protein/ADP-ribosylati 89.53
cd03562114 CID CID (CTD-Interacting Domain) domain family; CI 89.06
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 88.89
smart00582121 RPR domain present in proteins, which are involved 85.46
KOG0132894 consensus RNA polymerase II C-terminal domain-bind 84.58
KOG3671 569 consensus Actin regulatory protein (Wiskott-Aldric 84.43
COG5178 2365 PRP8 U5 snRNP spliceosome subunit [RNA processing 81.46
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=8.5e-59  Score=466.33  Aligned_cols=211  Identities=48%  Similarity=0.744  Sum_probs=188.0

Q ss_pred             hhhHHHHHHHHHhhhccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhhHH
Q 011731            5 FDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKAL   84 (478)
Q Consensus         5 f~qtvrdlkr~Vkn~Vln~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~gKnWR~VyKAL   84 (478)
                      +.+.+++|||+++|+|++|+++|+||++||+||+|||++++|+|||++||++.+|.+||.||||||+++||+||||||||
T Consensus         1 ~~~~~~~l~Rqakn~v~~y~~~e~kVrdAT~nd~wGPs~~lm~eIA~~ty~~~e~~eIm~vi~kRl~d~gknWR~VyKaL   80 (336)
T KOG2056|consen    1 GTMSFRDLKRQAKNFIKNYSEAELKVRDATSNDPWGPSGTLMAEIAQATYNFVEYQEIMDVLWKRLNDSGKNWRHVYKAL   80 (336)
T ss_pred             CcccHHHHHHHHHHHHhcchHHHHHHHhccccccCCCchHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCHHHHHHHHhhhhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhccc
Q 011731           85 TVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTT  164 (478)
Q Consensus        85 tLLEYLLkNGSErvVddlR~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~D~e~LreER~KAkknR~Ky~g~~  164 (478)
                      +||||||+||||+||+|||+|+++|++|++|+|+|++|+|+|++||+|||+|+.||+|+++|++||++++++|+||.+++
T Consensus        81 tlleyLl~~GSErv~~~~ren~~~I~tL~~Fq~iD~~G~dqG~nVRkkak~l~~LL~D~erLkeeR~~a~~~r~k~~~~~  160 (336)
T KOG2056|consen   81 TLLEYLLKNGSERVVDETRENIYTIETLKDFQYIDEDGKDQGLNVRKKAKELLSLLEDDERLKEERKKARKTRTKFAGFG  160 (336)
T ss_pred             HHHHHHHhcCcHHHHHHHHhhhHHHHHHhhceeeCCCCccchHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCccC-CCCCCCCCCCCCCCCcccccCCCC-C-CCCCCCCCccCCCCCCCCCCCC
Q 011731          165 AGGMYR-PGSYSSSGGNGDRYDNDRYEGRYG-N-DDQNGYGREREYGYGYRDDDRS  217 (478)
Q Consensus       165 ~gg~~~-~gs~ss~ggYg~~~d~d~~~~~~g-~-~~~~~~g~~~~~~~~~~d~d~~  217 (478)
                      .++++. .++.+++++|+++++..-+...+. . .++..++.+.+|.  |......
T Consensus       161 ~~~~~~~~~~~~s~~s~~d~~~~~~~~~~s~e~~~~r~~~~~~~e~~--~~~~~~~  214 (336)
T KOG2056|consen  161 PGSISNKSNSERSSASYQDDDDSAGPPRTSEEDDQGRPSTSNEEEYE--LQSALSL  214 (336)
T ss_pred             CCccccccccccCccccccchhhccCCccccchhhcccccccccchh--hhhhhhh
Confidence            776654 667788999999876421111111 1 4455666666666  6566654

>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins Back     alignment and domain information
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] Back     alignment and domain information
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1 Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA Back     alignment and domain information
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription] Back     alignment and domain information
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
1h0a_A158 Epsin Enth Bound To Ins(1,4,5)p3 Length = 158 2e-38
1eyh_A144 Crystal Structure Of The Epsin N-Terminal Homology 3e-38
1inz_A148 Solution Structure Of The Epsin N-Terminal Homology 7e-37
1edu_A149 Crystal Structure Of The Enth Domain Of Rat Epsin 1 6e-36
3onk_A150 Yeast Ent3_enth Domain Length = 150 1e-29
2qy7_A147 Crystal Structure Of Human Epsinr Enth Domain Lengt 6e-29
1xgw_A176 The Crystal Structure Of Human Enthoprotin N-Termin 6e-29
>pdb|1H0A|A Chain A, Epsin Enth Bound To Ins(1,4,5)p3 Length = 158 Back     alignment and structure 
Iteration: 1

 Score =  156 bits (395), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 70/137 (51%), Positives = 98/137 (71%)
Query: 27  EQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTV 86
           E KV +ATSN+PWGP  +L+++IA  T N   +  I+ +IWKR+ND GKNWRHVYKA+T+
Sbjct: 21  EIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTL 80
Query: 87  LEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERI 146
           +EYL+  GSERV    +E+ Y + TL DFQY+D  G+DQG NVR+K++ LVAL+ D++R+
Sbjct: 81  MEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRL 140
Query: 147 IEVRQKAAANRDKFRNT 163
            E R  A   ++K   T
Sbjct: 141 REERAHALKTKEKLAQT 157
>pdb|1EYH|A Chain A, Crystal Structure Of The Epsin N-Terminal Homology (Enth) Domain At 1.56 Angstrom Resolution Length = 144 Back     alignment and structure
>pdb|1INZ|A Chain A, Solution Structure Of The Epsin N-Terminal Homology (Enth) Domain Of Human Epsin Length = 148 Back     alignment and structure
>pdb|1EDU|A Chain A, Crystal Structure Of The Enth Domain Of Rat Epsin 1 Length = 149 Back     alignment and structure
>pdb|3ONK|A Chain A, Yeast Ent3_enth Domain Length = 150 Back     alignment and structure
>pdb|2QY7|A Chain A, Crystal Structure Of Human Epsinr Enth Domain Length = 147 Back     alignment and structure
>pdb|1XGW|A Chain A, The Crystal Structure Of Human Enthoprotin N-Terminal Domain Length = 176 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 2e-63
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 7e-63
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 6e-60
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 4e-57
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 6e-26
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 3e-24
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 2e-21
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 1e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
3v1v_A 433 2-MIB synthase, 2-methylisoborneol synthase; class 3e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 3e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-04
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 4e-04
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 5e-04
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 4e-05
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 2e-04
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 4e-04
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 4e-04
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 4e-04
2kpy_A108 Major pollen allergen ART V 1; defensin-like, poly 3e-04
2kpy_A108 Major pollen allergen ART V 1; defensin-like, poly 6e-04
1pk8_A 422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 3e-04
1pk8_A 422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 3e-04
1pk8_A 422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 9e-04
3pgw_S437 U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM 5e-04
2uv9_A 1878 Fatty acid synthase alpha subunits; fungal, dehydr 8e-04
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Length = 148 Back     alignment and structure
 Score =  201 bits (513), Expect = 2e-63
 Identities = 69/144 (47%), Positives = 99/144 (68%)

Query: 7   QTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVI 66
            +   ++R +   V      E KV +ATSN+PWGP  +L+++IA  T N   +  I+ +I
Sbjct: 5   MSTSSLRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMI 64

Query: 67  WKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQG 126
           WKR+ND GKNWRHVYKA+T++EYL+  GSERV    +E+ Y + TL DFQY+D  G+DQG
Sbjct: 65  WKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQG 124

Query: 127 SNVRKKSQSLVALVNDKERIIEVR 150
            NVR+K++ LVAL+ D++R+ E R
Sbjct: 125 VNVREKAKQLVALLRDEDRLREER 148
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Length = 144 Back     alignment and structure
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Length = 176 Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Length = 150 Back     alignment and structure
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Length = 271 Back     alignment and structure
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Length = 310 Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Length = 140 Back     alignment and structure
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Length = 299 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Length = 108 Back     alignment and structure
>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Length = 108 Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422 Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422 Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422 Back     alignment and structure
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 Back     alignment and structure
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query478
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 100.0
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 100.0
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 100.0
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 100.0
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 100.0
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 99.62
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 99.62
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 99.22
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 98.11
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 98.05
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 98.03
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 98.02
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 98.0
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 97.99
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 97.89
3g2s_A149 C-terminal fragment of sortilin-related receptor; 97.84
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 97.75
1sz9_A144 PCF11 protein; RNA polymerase II CTD interacting d 89.25
3d9j_A145 RNA-binding protein 16; SCAF8, RNA polymerase II C 84.11
4flb_A132 Regulation of nuclear PRE-mRNA domain-containing; 83.97
2ijq_A161 Hypothetical protein; structural genomics, PSI, pr 81.84
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Back     alignment and structure
Probab=100.00  E-value=2.5e-57  Score=421.28  Aligned_cols=157  Identities=39%  Similarity=0.809  Sum_probs=133.7

Q ss_pred             HHHHHHHHHhhhccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHh-ccCCCCchhhhhHHHH
Q 011731            8 TFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRI-NDTGKNWRHVYKALTV   86 (478)
Q Consensus         8 tvrdlkr~Vkn~Vln~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL-~d~gKnWR~VyKALtL   86 (478)
                      .|+.++|+|+|+|++||++|++|+||||||+|||++++|+|||++||++.+|.+||++||||| ++++++||||||||+|
T Consensus        17 ~~r~~~r~~kn~v~~ys~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~L   96 (176)
T 1xgw_A           17 KVRELVDKATNVVMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLLL   96 (176)
T ss_dssp             -----------CCCCCCHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCTTTHHHHHHHHHHHHHSSCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence            467788999999999999999999999999999999999999999999999999999999995 7889999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHhhhhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhccc
Q 011731           87 LEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTT  164 (478)
Q Consensus        87 LEYLLkNGSErvVddlR~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~D~e~LreER~KAkknR~Ky~g~~  164 (478)
                      |||||+||||+||+|+|+|++.|++|++|+|+|++|+|+|++||+||++|++||+|+++|++||++|+++|+||.|++
T Consensus        97 LeYLl~nGse~vv~~~r~~i~~I~~L~~F~y~D~~G~D~G~~VR~kAk~i~~LL~D~e~Lr~eR~ka~k~r~k~~G~~  174 (176)
T 1xgw_A           97 LAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDDDRLREERKKAKKNKDKYVGVS  174 (176)
T ss_dssp             HHHHHHHSCHHHHHHHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTCHHHHHHHHHHC-----------
T ss_pred             HHHHHHhCCHHHHHHHHHhHHHHHhhccCeeECCCCCChHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhccCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999885
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Back     alignment and structure
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Back     alignment and structure
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X Back     alignment and structure
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A Back     alignment and structure
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens} Back     alignment and structure
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 478
d1eyha_144 a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [T 1e-55
d1hx8a2140 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Droso 5e-33
d1hf8a2131 a.118.9.3 (A:19-149) Clathrin assembly lymphoid my 4e-31
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 144 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: ENTH domain
domain: Epsin 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  180 bits (457), Expect = 1e-55
 Identities = 70/138 (50%), Positives = 98/138 (71%)

Query: 26  IEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALT 85
            E KV +ATSN+PWGP  +L+++IA  T N   +  I+ +IWKR+ND GKNWRHVYKA+T
Sbjct: 6   AEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMT 65

Query: 86  VLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKER 145
           ++EYL+  GSERV    +E+ Y + TL DFQY+D  G+DQG NVR+K++ LVAL+ D++R
Sbjct: 66  LMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDR 125

Query: 146 IIEVRQKAAANRDKFRNT 163
           + E R  A   ++K   T
Sbjct: 126 LREERAHALKTKEKLAQT 143
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140 Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query478
d1eyha_144 Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} 100.0
d1hx8a2140 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 99.88
d1hf8a2131 Clathrin assembly lymphoid myeloid leukaemia prote 99.86
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 98.16
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 98.02
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 97.97
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 97.86
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 97.83
d1szaa_144 PCF11 protein {Baker's yeast (Saccharomyces cerevi 88.45
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: ENTH domain
domain: Epsin 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.2e-45  Score=322.92  Aligned_cols=142  Identities=49%  Similarity=0.878  Sum_probs=140.1

Q ss_pred             CCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHhCCHHHHHH
Q 011731           22 KVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDD  101 (478)
Q Consensus        22 n~S~~E~kVrEATSNDpWGPtgtlL~EIAqaTyn~~~y~~IM~vLwKRL~d~gKnWR~VyKALtLLEYLLkNGSErvVdd  101 (478)
                      |||++|++|++|||+|+|||++++|.+|+++||++..|..||++||+||.+++++||+|||||+||+|||+||+++||.|
T Consensus         2 n~s~~e~~v~~ATs~d~~~p~~k~~~~I~~~t~~~~~~~~i~~~L~kRl~~~~k~Wrvv~K~L~ll~~Ll~~G~~~~v~~   81 (144)
T d1eyha_           2 NYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQ   81 (144)
T ss_dssp             CCCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhhcccceeeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhcc
Q 011731          102 IREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNT  163 (478)
Q Consensus       102 lR~hi~~Ir~L~~FqyiD~~GkD~G~nVReKAk~Il~LL~D~e~LreER~KAkknR~Ky~g~  163 (478)
                      +|.|++.|+.|..|+|+|++|+|+|.+||+||+.|++||+|+++|++||++|+++|+||.++
T Consensus        82 ~~~~~~~i~~l~~f~~~d~~g~d~g~~VR~kA~~l~~Ll~d~~~L~~eR~~a~~~r~k~~~~  143 (144)
T d1eyha_          82 CKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREERAHALKTKEKLAQT  143 (144)
T ss_dssp             HHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHhHHHHHhhhcCcccCccccchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999876
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1szaa_ a.118.9.4 (A:) PCF11 protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure