Citrus Sinensis ID: 011746

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
MWILFKVFLLFIWLLCSSNNGAYANDNDFTHSHIVSVSDLLPPTVCNRTRTALPQGPGKASLEVVSKYGPCSRLNKGMSTHTPPLRKGRQRFHSENSRRLQKAIPDNYLQKSKSFQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYFSYCLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTLVVFSVSQVCLAFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNCS
cHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEccccccccccccccccccccccEEEEEEcccccccccccccccccHHHHccccHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEEcccccEEEEEEEcccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEEEEEEEcccccccccccccEEEEEccccccccccccEEEEcccccccHHHHccccccEEEcccccccccEEEEccccccccccEEEEcccccccccccEEEEEEEEEEccEEEEccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHcccccccccccccccEEEcccccEEcccEEEEEEccccEEEEccccEEEEEcccEEEEEEEEccccccEEEEEEEEEEEEEEEEEccccEEEEcccccc
cHHHHHHHHHHHHHHHcccccccccccccccEEEEEEccccccccccccHcccccccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEEccccEEEEEEEEccccccEEEEcccHHHHccccccccccccccccccccccHHHHHcccccccccccccccccEEEEEEEcccccccEEEEEEEEEEccccccccEEEccEEEEccccccccccccccEEEcccccccHHHHccccEEEEEEccccccccEEEEcccccccccccEEEEEEcccccccEEEEEEEEEEEccEEEEccHHHccccEEEEEcccEEEcccHHHHHHHHHHHHHHHHHcccccccccccccccEccccccEEEccEEEEEEEccEEEEcccccEEEEccccEEEEEEEcccccccEEEEEEEEEccEEEEEEccccEEEEcccccc
MWILFKVFLLFIWLLCssnngayandndfthshivsvsdllpptvcnrtrtalpqgpgkaSLEVVSkygpcsrlnkgmsthtpplrkgrqrfhsENSRRLQkaipdnylqksksfqfpakinntavDEYYIVVAIGEPKQYVSLLLDtgsdltwtqckpcihcsqqrdpffdpsksktfskipcnsascrilrkllppngqdncsseecpyniayadnssdggfwaADRITIQeanrdgyfswypfllgctnnntsdqngasgimgldrspisiisqtntsyfsyclpspygstgyitfgrpdavnskfikytpiittpeqseyydititgisvggeklpfnstyITKLSAIIDsgneitrlpsPIYAALRSAFRKRMMKYKktkaddeddfdtcydlsayetVVVPKITFhflggvdleldvRGTLVVFSVSQVCLAFaifpsdpnsislgnvqqrgyevhydvagrrlgfgpgncs
MWILFKVFLLFIWLLCSSNNGAYANDNDFTHSHIVSVSDLLPPTVCNRTrtalpqgpgkaslEVVSKYGPCSrlnkgmsthtpplrkgrqrfhsENSRRLQKAIPDNYLQKSKSFQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYFSYCLPSPYGSTGYITFGRPDAVNSKFIKYTPiittpeqseyYDITITGISVGGEKLPFNSTYITKLSAIIDsgneitrlpspiYAALRSAFRKRMMKYkktkaddeddfDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTLVVFSVSQVCLAFAIFPSDPNSISLGNVQQRGYEVHYDVAGRrlgfgpgncs
MWILFKVFLLFIWLLCSSNNGAYANDNDFTHSHIVSVSDLLPPTVCNRTRTALPQGPGKASLEVVSKYGPCSRLNKGMSTHTPPLRKGRQRFHSENSRRLQKAIPDNYLQKSKSFQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYFSYCLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTLVVFSVSQVCLAFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNCS
*WILFKVFLLFIWLLCSSNNGAYANDNDFTHSHIVSVSDLLPPTVCNRT****************************************************************SFQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFF*******FSKIPCNSASCRILRKLLP*********EECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNN********GIMGLDRSPISIISQTNTSYFSYCLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKT***DEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTLVVFSVSQVCLAFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGF******
***LFKVFLLFIWLLCSSNNG*****NDF*HSHIVSVSDL***********************VVSKYG*****************KGRQR*******************************NTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKT*SKIPCNSASCRILRK**********SSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYFSYCLPSPY*STGY**F***DAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKR************DDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTLVVFSVSQVCLAFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNCS
MWILFKVFLLFIWLLCSSNNGAYANDNDFTHSHIVSVSDLLPPTVCNRTRTALPQGPGKASLEVVSKYGPCSRLNKGMSTHTPP**************RLQKAIPDNYLQKSKSFQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYFSYCLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTLVVFSVSQVCLAFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNCS
MWILFKVFLLFIWLLCSSNNGAYANDNDFTHSHIVSVSDLLPPTVCN**********GKASLEVVSKYGPCSRLNKGMSTHTPPLRKGRQRFHSENSRRLQK*************QFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYFSYCLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTLVVFSVSQVCLAFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNC*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MWILFKVFLLFIWLLCSSNNGAYANDNDFTHSHIVSVSDLLPPTVCNRTRTALPQGPGKASLEVVSKYGPCSRLNKGMSTHTPPLRKGRQRFHSENSRRLQKAIPDNYLQKSKSFQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYFSYCLPSPYGSTGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTLVVFSVSQVCLAFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNCS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query478 2.2.26 [Sep-21-2011]
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.686 0.656 0.337 6e-44
Q766C2438 Aspartic proteinase nepen N/A no 0.755 0.824 0.320 3e-42
Q6XBF8437 Aspartic proteinase CDR1 no no 0.786 0.860 0.326 7e-42
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.692 0.704 0.319 2e-38
Q766C3437 Aspartic proteinase nepen N/A no 0.734 0.803 0.294 5e-38
Q3EBM5447 Probable aspartic proteas no no 0.836 0.894 0.310 7e-32
Q9LZL3453 Aspartic proteinase PCS1 no no 0.682 0.719 0.269 3e-28
Q9S9K4475 Aspartic proteinase-like no no 0.769 0.774 0.25 2e-24
Q9LX20528 Aspartic proteinase-like no no 0.696 0.630 0.254 1e-13
Q0IU52410 Aspartic proteinase Asp1 no no 0.483 0.563 0.260 3e-09
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function desciption
 Score =  179 bits (453), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 181/362 (50%), Gaps = 34/362 (9%)

Query: 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSA 187
           EY+  + +G P + + L+LDTGSD+ W QC+PC  C QQ DP F+P+ S T+  + C++ 
Sbjct: 161 EYFSRIGVGTPAKEMYLVLDTGSDVNWIQCEPCADCYQQSDPVFNPTSSSTYKSLTCSAP 220

Query: 188 SCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFL 247
            C +L           C S +C Y ++Y D S   G  A D +T   + +    +     
Sbjct: 221 QCSLLET-------SACRSNKCLYQVSYGDGSFTVGELATDTVTFGNSGKINNVA----- 268

Query: 248 LGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSYFSYCL-PSPYGSTGYITF-----GR 301
           LGC ++N     GA+G++GL    +SI +Q   + FSYCL     G +  + F     G 
Sbjct: 269 LGCGHDNEGLFTGAAGLLGLGGGVLSITNQMKATSFSYCLVDRDSGKSSSLDFNSVQLGG 328

Query: 302 PDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEK--LP---FNSTYITKLSAIIDSG 356
            DA         P++   +   +Y + ++G SVGGEK  LP   F+         I+D G
Sbjct: 329 GDAT-------APLLRNKKIDTFYYVGLSGFSVGGEKVVLPDAIFDVDASGSGGVILDCG 381

Query: 357 NEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGG 416
             +TRL +  Y +LR AF K  +  KK  +     FDTCYD S+  TV VP + FHF GG
Sbjct: 382 TAVTRLQTQAYNSLRDAFLKLTVNLKK-GSSSISLFDTCYDFSSLSTVKVPTVAFHFTGG 440

Query: 417 VDLELDVRGTLV-VFSVSQVCLAFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPG 475
             L+L  +  L+ V      C AFA  P+  +   +GNVQQ+G  + YD++   +G    
Sbjct: 441 KSLDLPAKNYLIPVDDSGTFCFAFA--PTSSSLSIIGNVQQQGTRITYDLSKNVIGLSGN 498

Query: 476 NC 477
            C
Sbjct: 499 KC 500
Aspartic protease involved in drought avoidance through abscisic acid signaling.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 Back     alignment and function description
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query478
297811185475 hypothetical protein ARALYDRAFT_325615 [ 0.962 0.968 0.414 2e-89
22326716474 aspartyl protease family protein [Arabid 0.853 0.860 0.443 2e-88
8979711446 nucleoid DNA-binding protein cnd41-like 0.853 0.914 0.441 4e-88
356524287481 PREDICTED: aspartic proteinase nepenthes 0.922 0.916 0.419 4e-86
225430555481 PREDICTED: aspartic proteinase nepenthes 0.953 0.948 0.400 8e-85
356527091482 PREDICTED: aspartic proteinase nepenthes 0.920 0.912 0.412 1e-84
356567196490 PREDICTED: aspartic proteinase nepenthes 0.841 0.820 0.434 5e-83
356527089488 PREDICTED: aspartic proteinase nepenthes 0.838 0.821 0.432 3e-82
224092220473 predicted protein [Populus trichocarpa] 0.947 0.957 0.388 1e-81
225430551490 PREDICTED: aspartic proteinase nepenthes 0.951 0.928 0.389 1e-80
>gi|297811185|ref|XP_002873476.1| hypothetical protein ARALYDRAFT_325615 [Arabidopsis lyrata subsp. lyrata] gi|297319313|gb|EFH49735.1| hypothetical protein ARALYDRAFT_325615 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 201/485 (41%), Positives = 276/485 (56%), Gaps = 25/485 (5%)

Query: 3   ILFKVFLLFIWLLCSSNNGAYANDNDFTHSHIVSVSDLLPPTVCNRTRTALPQGPGKASL 62
           +L  + +L + L    N GA   + D +H+  VS       + C  +  A      K+SL
Sbjct: 7   LLNIIIILCVCLNLGCNEGAQEREIDDSHTIQVSSLFPASSSSCVLSPRASTT---KSSL 63

Query: 63  EVVSKYGPCSRLNKGMST---HTPPLRKGRQRFHSENSRRLQKAIPDNYLQKSKSFQFPA 119
            V  ++G CSRLN G +T   H   LR  + R +S +S+ L K +  N++ +S+S   PA
Sbjct: 64  HVTHRHGTCSRLNNGKATSPDHVEILRLDQARVNSIHSK-LSKKLTTNHVSQSQSTDLPA 122

Query: 120 KINNTAVDEYYIV-VAIGEPKQYVSLLLDTGSDLTWTQCKPCIH-CSQQRDPFFDPSKSK 177
           K  +T     YIV V +G PK  +SL+ DTGSDLTWTQC+PC+  C  Q++P F+PSKS 
Sbjct: 123 KDGSTLGSGNYIVTVGLGTPKNDLSLIFDTGSDLTWTQCQPCVRTCYDQKEPIFNPSKST 182

Query: 178 TFSKIPCNSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANR 237
           ++  + C+SA+C  L       G  +CS+  C Y I Y D S   GF A D+ T+  ++ 
Sbjct: 183 SYYNVSCSSAACGSLSSATGNAG--SCSASNCIYGIQYGDQSFSVGFLAKDKFTLTSSDV 240

Query: 238 -DGYFSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSY---FSYCLPSPYGS 293
            DG +       GC  NN     G +G++GL R  +S  SQT T+Y   FSYCLPS    
Sbjct: 241 FDGVY------FGCGENNQGLFTGVAGLLGLGRDKLSFPSQTATAYNKIFSYCLPSSASY 294

Query: 294 TGYITFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAII 353
           TG++TFG   A  S+ +K+TPI T  + + +Y + I  I+VGG+KLP  ST  +   A+I
Sbjct: 295 TGHLTFG--SAGISRSVKFTPISTITDGTSFYGLNIVAITVGGQKLPIPSTVFSTPGALI 352

Query: 354 DSGNEITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHF 413
           DSG  ITRLP   YAALRS+F+ +M KY  T        DTC+DLS ++TV +PK+ F F
Sbjct: 353 DSGTVITRLPPKAYAALRSSFKAKMSKYPTTSG--VSILDTCFDLSGFKTVTIPKVAFSF 410

Query: 414 LGGVDLELDVRGTLVVFSVSQVCLAFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFG 473
            GG  +EL  +G    F +SQVCLAFA    D N+   GNVQQ+  EV YD AG R+GF 
Sbjct: 411 SGGAVVELGSKGIFYAFKISQVCLAFAGNSDDSNAAIFGNVQQQTLEVVYDGAGGRVGFA 470

Query: 474 PGNCS 478
           P  CS
Sbjct: 471 PNGCS 475

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|22326716|ref|NP_196638.2| aspartyl protease family protein [Arabidopsis thaliana] gi|18700103|gb|AAL77663.1| AT5g10770/T30N20_40 [Arabidopsis thaliana] gi|24111269|gb|AAN46758.1| At5g10770/T30N20_40 [Arabidopsis thaliana] gi|332004211|gb|AED91594.1| aspartyl protease family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|8979711|emb|CAB96832.1| nucleoid DNA-binding protein cnd41-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356524287|ref|XP_003530761.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|225430555|ref|XP_002285593.1| PREDICTED: aspartic proteinase nepenthesin-2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356527091|ref|XP_003532147.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Glycine max] Back     alignment and taxonomy information
>gi|356567196|ref|XP_003551807.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Glycine max] Back     alignment and taxonomy information
>gi|356527089|ref|XP_003532146.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|224092220|ref|XP_002309515.1| predicted protein [Populus trichocarpa] gi|222855491|gb|EEE93038.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225430551|ref|XP_002283470.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query478
TAIR|locus:2183730474 AT5G10770 "AT5G10770" [Arabido 0.951 0.959 0.426 9.3e-91
TAIR|locus:2183715464 AT5G10760 [Arabidopsis thalian 0.933 0.961 0.385 8.4e-74
TAIR|locus:2035297485 AT1G01300 [Arabidopsis thalian 0.694 0.684 0.368 1.1e-55
TAIR|locus:2076745483 AT3G61820 [Arabidopsis thalian 0.679 0.672 0.394 4.8e-55
TAIR|locus:2017799484 AT1G79720 [Arabidopsis thalian 0.700 0.692 0.367 1.6e-54
TAIR|locus:2031225483 AT1G25510 [Arabidopsis thalian 0.738 0.730 0.351 3.1e-51
TAIR|locus:2095042500 ASPG1 "ASPARTIC PROTEASE IN GU 0.696 0.666 0.333 8.5e-49
TAIR|locus:2145954437 CDR1 "CONSTITUTIVE DISEASE RES 0.788 0.862 0.332 2.3e-48
TAIR|locus:2095365470 AT3G20015 [Arabidopsis thalian 0.690 0.702 0.318 2.3e-46
TAIR|locus:2010786431 AT1G64830 [Arabidopsis thalian 0.694 0.770 0.359 1e-45
TAIR|locus:2183730 AT5G10770 "AT5G10770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
 Identities = 205/481 (42%), Positives = 279/481 (58%)

Query:     7 VFLLFIWLLCSSNNGAYANDNDFTHSHIVSVSDLLPPTVCNRTRTALPQGPG-KASLEVV 65
             + +L I L    N+GA   + D   SH + VS LLP +  + +    P+    K+SL V 
Sbjct:    11 IIILCICLNLGCNDGAQERETD---SHTIQVSSLLPSS--SSSCVLSPRASTTKSSLHVT 65

Query:    66 SKYGPCSRLNKGMST---HTPPLRKGRQRFHSENSRRLQKAIPDNYLQKSKSFQFPAKIN 122
              ++G CSRLN G +T   H   LR  + R +S +S+ L K +  +++ +SKS   PAK  
Sbjct:    66 HRHGTCSRLNNGKATSPDHVEILRLDQARVNSIHSK-LSKKLATDHVSESKSTDLPAKDG 124

Query:   123 NTAVDEYYIV-VAIGEPKQYVSLLLDTGSDLTWTQCKPCIH-CSQQRDPFFDPSKSKTFS 180
             +T     YIV V +G PK  +SL+ DTGSDLTWTQC+PC+  C  Q++P F+PSKS ++ 
Sbjct:   125 STLGSGNYIVTVGLGTPKNDLSLIFDTGSDLTWTQCQPCVRTCYDQKEPIFNPSKSTSYY 184

Query:   181 KIPCNSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGY 240
              + C+SA+C  L       G  +CS+  C Y I Y D S   GF A ++ T+   N D +
Sbjct:   185 NVSCSSAACGSLSSATGNAG--SCSASNCIYGIQYGDQSFSVGFLAKEKFTL--TNSDVF 240

Query:   241 FSWYPFLLGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSY---FSYCLPSPYGSTGYI 297
                Y    GC  NN     G +G++GL R  +S  SQT T+Y   FSYCLPS    TG++
Sbjct:   241 DGVY---FGCGENNQGLFTGVAGLLGLGRDKLSFPSQTATAYNKIFSYCLPSSASYTGHL 297

Query:   298 TFGRPDAVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGN 357
             TFG   A  S+ +K+TPI T  + + +Y + I  I+VGG+KLP  ST  +   A+IDSG 
Sbjct:   298 TFG--SAGISRSVKFTPISTITDGTSFYGLNIVAITVGGQKLPIPSTVFSTPGALIDSGT 355

Query:   358 EITRLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGV 417
              ITRLP   YAALRS+F+ +M KY  T        DTC+DLS ++TV +PK+ F F GG 
Sbjct:   356 VITRLPPKAYAALRSSFKAKMSKYPTTSG--VSILDTCFDLSGFKTVTIPKVAFSFSGGA 413

Query:   418 DLELDVRGTLVVFSVSQVCLAFAIFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNC 477
              +EL  +G   VF +SQVCLAFA    D N+   GNVQQ+  EV YD AG R+GF P  C
Sbjct:   414 VVELGSKGIFYVFKISQVCLAFAGNSDDSNAAIFGNVQQQTLEVVYDGAGGRVGFAPNGC 473

Query:   478 S 478
             S
Sbjct:   474 S 474
GO:0003677 "DNA binding" evidence=ISS
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA
TAIR|locus:2183715 AT5G10760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035297 AT1G01300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076745 AT3G61820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2017799 AT1G79720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031225 AT1G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095042 ASPG1 "ASPARTIC PROTEASE IN GUARD CELL 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145954 CDR1 "CONSTITUTIVE DISEASE RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095365 AT3G20015 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010786 AT1G64830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.691
3rd Layer3.4.23.12LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh1_pm.C_scaffold_6000835
annotation not avaliable (475 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 5e-97
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 7e-64
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 3e-60
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 6e-45
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 6e-28
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 1e-27
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 3e-24
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 1e-18
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 4e-13
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 5e-13
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 3e-08
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 2e-07
PTZ00165482 PTZ00165, PTZ00165, aspartyl protease; Provisional 5e-07
cd05473364 cd05473, beta_secretase_like, Beta-secretase, aspa 2e-06
cd05478317 cd05478, pepsin_A, Pepsin A, aspartic protease pro 6e-05
cd05488320 cd05488, Proteinase_A_fungi, Fungal Proteinase A , 0.002
cd05486316 cd05486, Cathespin_E, Cathepsin E, non-lysosomal a 0.003
cd05485329 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi 0.004
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information 
 Score =  294 bits (754), Expect = 5e-97
 Identities = 137/356 (38%), Positives = 179/356 (50%), Gaps = 63/356 (17%)

Query: 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSA 187
           EY + V +G P +  ++++DTGSDLTW QC+PC                           
Sbjct: 1   EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC--------------------------- 33

Query: 188 SCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFL 247
                                C Y ++Y D S   G  A D +T+             F 
Sbjct: 34  ---------------------CLYQVSYGDGSYTTGDLATDTLTL-----GSSDVVPGFA 67

Query: 248 LGCTNNNTSDQNGASGIMGLDRSPISIISQTNTSY---FSYCLPS-PYGSTGYITFGRPD 303
            GC ++N     GA+G++GL R  +S+ SQT +SY   FSYCLP     S+GY++FG   
Sbjct: 68  FGCGHDNEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRSSSSSGYLSFGAA- 126

Query: 304 AVNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRLP 363
           A       +TP+++ P    +Y + +TGISVGG +LP           IIDSG  ITRLP
Sbjct: 127 ASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLP 186

Query: 364 SPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDV 423
              YAALR AFR  M  Y   +A      DTCYDLS + +V VP ++ HF GG D+ELD 
Sbjct: 187 PSAYAALRDAFRAAMAAY--PRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDA 244

Query: 424 RGTL-VVFSVSQVCLAFAIFPSDPNSIS-LGNVQQRGYEVHYDVAGRRLGFGPGNC 477
            G L  V   SQVCLAFA   SD   +S +GNVQQ+ + V YDVAG R+GF PG C
Sbjct: 245 SGVLYPVDDSSQVCLAFAG-TSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299

Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 299
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional Back     alignment and domain information
>gnl|CDD|133140 cd05473, beta_secretase_like, Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>gnl|CDD|133153 cd05486, Cathespin_E, Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 478
PLN03146431 aspartyl protease family protein; Provisional 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 100.0
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.96
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.89
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 97.71
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 95.82
PF1365090 Asp_protease_2: Aspartyl protease 94.53
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 93.91
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 92.14
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 90.78
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 90.39
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 88.16
PF08284135 RVP_2: Retroviral aspartyl protease; InterPro: IPR 84.81
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 84.65
PF00077100 RVP: Retroviral aspartyl protease The Prosite entr 81.38
PF1365090 Asp_protease_2: Aspartyl protease 81.33
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.4e-75  Score=604.12  Aligned_cols=390  Identities=32%  Similarity=0.569  Sum_probs=323.2

Q ss_pred             CceEEEEEcCcCCCCCCCCC----CCCchhhHHhhhhhhhhhhhhhhhccCCCccccCCcceeeeeeecCC-CCeeEEEE
Q 011746           58 GKASLEVVSKYGPCSRLNKG----MSTHTPPLRKGRQRFHSENSRRLQKAIPDNYLQKSKSFQFPAKINNT-AVDEYYIV  132 (478)
Q Consensus        58 ~~~~~~l~h~~~~~sp~~~~----~~~~~~~l~~d~~R~~~l~~~r~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~Y~~~  132 (478)
                      .+++++|+||++||+|....    .+.++++++|+++|++++.+ +...             ..|+..+.. ++++|+++
T Consensus        23 ~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~-------------~~~~~~~~~~~~~~Y~v~   88 (431)
T PLN03146         23 GGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRP-TDAS-------------PNDPQSDLISNGGEYLMN   88 (431)
T ss_pred             CceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhh-cccc-------------CCccccCcccCCccEEEE
Confidence            57999999999999997533    35677888889999887765 3211             123333333 78999999


Q ss_pred             EEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCCCC-CCCCCc
Q 011746          133 VAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNCS-SEECPY  211 (478)
Q Consensus       133 v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~-~~~c~~  211 (478)
                      |+||||+|++.|++||||+++||||.+|..|+.|.++.|||++|+||+.++|+++.|+.+..      ...|. ++.|.|
T Consensus        89 i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~------~~~c~~~~~c~y  162 (431)
T PLN03146         89 ISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN------QASCSDENTCTY  162 (431)
T ss_pred             EEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCC------CCCCCCCCCCee
Confidence            99999999999999999999999999999999988899999999999999999999987762      23465 456999


Q ss_pred             eeecCCCCceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCC-CCcceEEecCCCCCcccccccccc---ceEec
Q 011746          212 NIAYADNSSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQ-NGASGIMGLDRSPISIISQTNTSY---FSYCL  287 (478)
Q Consensus       212 ~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~-~~~~GilGLg~~~~Sl~sQl~~~~---FS~cL  287 (478)
                      .+.|+||+.+.|++++|+|+|++.. .....++++.|||++.+.+.| ...+||||||++++|+++|+....   |||||
T Consensus       163 ~i~Ygdgs~~~G~l~~Dtltlg~~~-~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL  241 (431)
T PLN03146        163 SYSYGDGSFTKGNLAVETLTIGSTS-GRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCL  241 (431)
T ss_pred             EEEeCCCCceeeEEEEEEEEeccCC-CCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEEC
Confidence            9999999888999999999995432 233458999999999988877 468999999999999999987543   99999


Q ss_pred             cCCC---CCccEEEeCCCCCcCC-CCceEeeceeCCCCCccEEEEEeEEEECCeEeeeCccccc---CCceEEeccCcee
Q 011746          288 PSPY---GSTGYITFGRPDAVNS-KFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYIT---KLSAIIDSGNEIT  360 (478)
Q Consensus       288 ~~~~---~~~G~L~fG~~d~~~~-~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~---~~~~iiDSGT~~t  360 (478)
                      ++..   ...|.|+||+.. ++. ..+.||||+.+.. +.+|+|+|++|+||++++++++..|.   .+++||||||++|
T Consensus       242 ~~~~~~~~~~g~l~fG~~~-~~~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t  319 (431)
T PLN03146        242 VPLSSDSNGTSKINFGTNA-IVSGSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLT  319 (431)
T ss_pred             CCCCCCCCCcceEEeCCcc-ccCCCCceEcccccCCC-CCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccce
Confidence            7632   247999999854 333 4589999986532 67999999999999999988877652   3679999999999


Q ss_pred             ecCHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEEEecCCceEEEeCCCeEEEEEE
Q 011746          361 RLPSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTLVVFSVSQVCLAFA  440 (478)
Q Consensus       361 ~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl~~~  440 (478)
                      +||+++|++|+++|.+++...+....  ...+++||+...  ...+|+|+|+|+ |++++|++++|++....+.+|+++.
T Consensus       320 ~Lp~~~y~~l~~~~~~~~~~~~~~~~--~~~~~~C~~~~~--~~~~P~i~~~F~-Ga~~~l~~~~~~~~~~~~~~Cl~~~  394 (431)
T PLN03146        320 LLPSDFYSELESAVEEAIGGERVSDP--QGLLSLCYSSTS--DIKLPIITAHFT-GADVKLQPLNTFVKVSEDLVCFAMI  394 (431)
T ss_pred             ecCHHHHHHHHHHHHHHhccccCCCC--CCCCCccccCCC--CCCCCeEEEEEC-CCeeecCcceeEEEcCCCcEEEEEe
Confidence            99999999999999999864333333  345778998543  257999999996 5999999999999887678899988


Q ss_pred             ecCCCCCeeeechhhhcceEEEEeCCCCEEEEeeCCCC
Q 011746          441 IFPSDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGNCS  478 (478)
Q Consensus       441 ~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~  478 (478)
                      +..   +.+|||+.|||++||+||++++|||||+.+|+
T Consensus       395 ~~~---~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~  429 (431)
T PLN03146        395 PTS---SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCT  429 (431)
T ss_pred             cCC---CceEECeeeEeeEEEEEECCCCEEeeecCCcC
Confidence            653   26999999999999999999999999999995

>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
3vlb_A413 Crystal Structure Of Xeg-Edgp Length = 413 9e-10
3vla_A413 Crystal Structure Of Edgp Length = 413 1e-09
2b42_A381 Crystal Structure Of The Triticum Xylanse Inhibitor 1e-09
1t6e_X381 Crystal Structure Of The Triticum Aestivum Xylanase 1e-09
3hd8_A389 Crystal Structure Of The Triticum Aestivum Xylanase 1e-07
3fv3_A339 Secreted Aspartic Protease 1 From Candida Parapsilo 1e-07
2rmp_A361 Rmp-Pepstatin A Complex Length = 361 1e-06
2ewy_A383 Crystal Structure Of Human Bace2 In Complex With A 1e-06
2q15_A385 Structure Of Bace Complexed To Compound 3a Length = 2e-06
2q11_A388 Structure Of Bace Complexed To Compound 1 Length = 2e-06
2vie_A392 Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2- 3e-06
1mpp_A361 X-Ray Analyses Of Aspartic Proteinases. V. Structur 8e-06
3bra_A409 Bace-1 Complexed With Compound 1 Length = 409 2e-05
3kmx_A395 Structure Of Bace Bound To Sch346572 Length = 395 2e-05
2fdp_A388 Crystal Structure Of Beta-Secretase Complexed With 2e-05
1fkn_A391 Structure Of Beta-Secretase Complexed With Inhibito 2e-05
1sgz_A389 Crystal Structure Of Unbound Beta-Secretase Catalyt 2e-05
3u6a_A390 Rational Design And Synthesis Of Aminopiperazinones 2e-05
2hm1_A406 Crystal Structure Of Human Beta-Secretase (Bace) In 2e-05
1ym2_A402 Crystal Structure Of Human Beta Secretase Complexed 2e-05
4ewo_A386 Design And Synthesis Of Potent Hydroxyethylamine (H 2e-05
3dm6_A406 Beta-Secretase 1 Complexed With Statine-Based Inhib 2e-05
2qzl_A411 Crystal Structure Of Human Beta Secretase Complexed 2e-05
2qk5_A395 Structure Of Bace1 Bound To Sch626485 Length = 395 2e-05
3ixk_A405 Potent Beta-Secretase 1 Inhibitor Length = 405 2e-05
3cib_A390 Structure Of Bace Bound To Sch727596 Length = 390 2e-05
4dpf_A391 Bace-1 In Complex With A Hea-Macrocyclic Type Inhib 2e-05
3udh_A404 Crystal Structure Of Bace With Compound 1 Length = 2e-05
1w50_A411 Apo Structure Of Bace (beta Secretase) Length = 411 2e-05
4b1d_A388 New Aminoimidazoles As Bace-1 Inhibitors: From Rati 2e-05
2zjn_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 2e-05
3ckp_A412 Crystal Structure Of Bace-1 In Complex With Inhibit 2e-05
2of0_A402 X-Ray Crystal Structure Of Beta Secretase Complexed 2e-05
2wjo_A412 Human Bace (Beta Secretase) In Complex With Cyclohe 3e-05
3l58_A414 Structure Of Bace Bound To Sch589432 Length = 414 3e-05
2zhr_A411 Crystal Structure Of Bace1 In Complex With Om99-2 A 3e-05
3r1g_B402 Structure Basis Of Allosteric Inhibition Of Bace1 B 3e-05
4b1c_A375 New Aminoimidazoles As Bace-1 Inhibitors: From Rati 3e-05
3hvg_A411 Structure Of Bace (Beta Secretase) In Complex With 3e-05
2qu2_A415 Bace1 With Compound 1 Length = 415 3e-05
1tqf_A405 Crystal Structure Of Human Beta Secretase Complexed 3e-05
1ym4_A408 Crystal Structure Of Human Beta Secretase Complexed 3e-05
3tpr_A433 Crystal Structure Of Bace1 Complexed With An Inhibi 3e-05
3tpj_A433 Apo Structure Of Bace1 Length = 433 3e-05
3qi1_A408 Design And Synthesis Of Hydroxyethylamine (Hea) Bac 3e-05
2zjk_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 3e-05
3exo_A413 Crystal Structure Of Bace1 Bound To Inhibitor Lengt 3e-05
3vv6_A416 Crystal Structure Of Beta Secetase In Complex With 3e-05
2hiz_A455 Crystal Structure Of Human Beta-Secretase (Bace) In 3e-05
2va5_A455 X-Ray Crystal Structure Of Beta Secretase Complexed 4e-05
1htr_B329 Crystal And Molecular Structures Of Human Progastri 4e-05
3lpi_A455 Structure Of Bace Bound To Sch745132 Length = 455 4e-05
2zji_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 4e-05
2zjj_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 5e-05
2zjh_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 7e-05
2qzw_A341 Secreted Aspartic Proteinase (Sap) 1 From Candida A 3e-04
1eag_A342 Secreted Aspartic Proteinase (Sap2) From Candida Al 5e-04
1wkr_A340 Crystal Structure Of Aspartic Proteinase From Irpex 6e-04
1zap_A342 Secreted Aspartic Protease From C. Albicans Length 7e-04
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp Length = 413 Back     alignment and structure 
Iteration: 1

 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 155/391 (39%), Gaps = 62/391 (15%)
Query: 128 EYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSA 187
           +Y   +    P    +L++D G    W      + C Q          S T+  + C ++
Sbjct: 21  QYVTTINQRTPLVSENLVVDLGGRFLW------VDCDQNY-------VSSTYRPVRCRTS 67
Query: 188 SCRILRKLL-------PPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQ--EANRD 238
            C +   +        P  G +N +    P N     N++ GG  A D ++++  + +  
Sbjct: 68  QCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVI--NTATGGEVAEDVVSVESTDGSSS 125
Query: 239 GYFSWYP-FLLGCTNNNTSDQNGASGIMG---LDRSPISIISQTNTSY-----FSYCLPS 289
           G     P F+  C   +   QN ASG++G   L R+ I++ SQ  +++     F+ CL  
Sbjct: 126 GRVVTVPRFIFSCAPTSLL-QNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSG 184
Query: 290 PYGSTGYITFGR------PDAVNS-KFIKYTPIITTP----------EQSEYYDITITGI 332
              S   I FG       P+ + S K + YTP++T P          E S  Y I +  I
Sbjct: 185 STSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSI 244
Query: 333 SVGGEKLPFNSTYITKLSA-----IIDSGNEITRLPSPIYAALRSAFRKRMMKYKKTKAD 387
            +  + +  N++ ++  SA      I + N  T L + IY A+  AF K       T+  
Sbjct: 245 KINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVA 304
Query: 388 DEDDFDTCYD----LSAYETVVVPKITFHFLG-GVDLELDVRGTLVVFSVSQVCLAFAIF 442
               F  C+     LS      VP I        V   +    ++V  + + VCL     
Sbjct: 305 SVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDG 364
Query: 443 PSD-PNSISLGNVQQRGYEVHYDVAGRRLGF 472
            S+   SI +G  Q     V +D+A  R+GF
Sbjct: 365 GSNLRTSIVIGGHQLEDNLVQFDLATSRVGF 395
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp Length = 413 Back     alignment and structure
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In Complex With Bacillus Subtilis Xylanase Length = 381 Back     alignment and structure
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor I Length = 381 Back     alignment and structure
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase Length = 389 Back     alignment and structure
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In Complex With Pepstatin A Length = 339 Back     alignment and structure
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex Length = 361 Back     alignment and structure
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A Hydroxyethylenamine Transition-State Inhibitor Length = 383 Back     alignment and structure
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a Length = 385 Back     alignment and structure
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1 Length = 388 Back     alignment and structure
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2-Hydroxy- 3-((1,1, 5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2- Oxopyrrolidin-1-Yl)benzamide Length = 392 Back     alignment and structure
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And Refinement At 2.0 Angstroms Resolution Of The Aspartic Proteinase From Mucor Pusillus Length = 361 Back     alignment and structure
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1 Length = 409 Back     alignment and structure
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572 Length = 395 Back     alignment and structure
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An Amino- Ethylene Inhibitor Length = 388 Back     alignment and structure
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor Length = 391 Back     alignment and structure
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic Domain. Length = 389 Back     alignment and structure
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As Beta Secretase (Bace) Inhibitors Length = 390 Back     alignment and structure
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor (2) Length = 406 Back     alignment and structure
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Aur200 Length = 402 Back     alignment and structure
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea) Bace-1 Inhibitors Length = 386 Back     alignment and structure
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor Length = 406 Back     alignment and structure
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Ixs Length = 411 Back     alignment and structure
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485 Length = 395 Back     alignment and structure
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor Length = 405 Back     alignment and structure
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596 Length = 390 Back     alignment and structure
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor Length = 391 Back     alignment and structure
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1 Length = 404 Back     alignment and structure
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase) Length = 411 Back     alignment and structure
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 388 Back     alignment and structure
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)- Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)- Acetamide Length = 405 Back     alignment and structure
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor Length = 412 Back     alignment and structure
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 5 Length = 402 Back     alignment and structure
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h- Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide Length = 412 Back     alignment and structure
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432 Length = 414 Back     alignment and structure
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph 5.0 Length = 411 Back     alignment and structure
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An Exosite- Binding Antibody Length = 402 Back     alignment and structure
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 375 Back     alignment and structure
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0 Length = 411 Back     alignment and structure
>pdb|2QU2|A Chain A, Bace1 With Compound 1 Length = 415 Back     alignment and structure
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Inhibitor Length = 405 Back     alignment and structure
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Amk640 Length = 408 Back     alignment and structure
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor Length = 433 Back     alignment and structure
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1 Length = 433 Back     alignment and structure
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1 Inhibitors: Prime Side Chromane-Containing Inhibitors Length = 408 Back     alignment and structure
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid(3-Mercapto-Propyl)-Amide Length = 405 Back     alignment and structure
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor Length = 413 Back     alignment and structure
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With 2-Amino-3-Methyl-6- ((1s, 2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One Length = 416 Back     alignment and structure
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor Length = 455 Back     alignment and structure
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 8c Length = 455 Back     alignment and structure
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At 1.62 Angstroms Resolution Length = 329 Back     alignment and structure
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132 Length = 455 Back     alignment and structure
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(2, 6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto- Butyramide Length = 405 Back     alignment and structure
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid (2-Mercapto-Ethyl)- Amide Length = 405 Back     alignment and structure
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide Length = 405 Back     alignment and structure
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans Length = 341 Back     alignment and structure
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans Complexed With A70450 Length = 342 Back     alignment and structure
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex Lacteus Length = 340 Back     alignment and structure
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans Length = 342 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 8e-86
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 5e-78
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 4e-77
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 1e-30
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 1e-28
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 2e-28
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 6e-28
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 7e-28
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 2e-27
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 6e-26
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 3e-25
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 3e-23
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 2e-22
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 4e-22
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 1e-21
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 6e-21
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 5e-20
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 1e-19
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 3e-19
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 4e-19
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 4e-19
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 6e-19
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 2e-18
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 4e-18
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 7e-18
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 3e-17
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 3e-17
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 3e-17
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 4e-17
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 5e-17
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 1e-16
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 2e-16
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 1e-06
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  268 bits (686), Expect = 8e-86
 Identities = 62/398 (15%), Positives = 122/398 (30%), Gaps = 43/398 (10%)

Query: 110 QKSKSFQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDP 169
           +       P + N+ +   ++  +    P   V +L+D   +  W  C+        + P
Sbjct: 5   KPINLVVLPVQ-NDGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAP 63

Query: 170 FFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNCSSEECP-YNIAYADNSSDGGFWAAD 228
           F   ++    +   C S              +  C    C   +       +  G    D
Sbjct: 64  FCHSTQCSRANTHQCLSCPA---------ASRPGCHKNTCGLMSTNPITQQTGLGELGED 114

Query: 229 RITIQEANRDG-----YFSWYPFLLGCTNNNTSDQ---NGASGIMGLDRSPISIISQTNT 280
            + I              +   FL  C  +    +       G+ GL  +PIS+ +Q  +
Sbjct: 115 VLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLAS 174

Query: 281 SY-----FSYCLPSPYGSTGYITFG--------RPDAVNSKFIKYTPIITTPEQSEYYDI 327
            +     F+ CL     S G I FG          +      + +TP+  T +    Y++
Sbjct: 175 HFGLQRQFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQG--EYNV 232

Query: 328 TITGISVGGEKLPFNSTYITKLS------AIIDSGNEITRLPSPIYAALRSAFRKRMMKY 381
            +  I +    +   +   + +        +I +      L   +Y A    F +++ K 
Sbjct: 233 RVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQ 292

Query: 382 KKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTLVVFSVSQVCLAFAI 441
              +      F  C++ +         +      G    +     +V       CL    
Sbjct: 293 A--QVKSVAPFGLCFNSNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMN 350

Query: 442 FPSDPNSIS-LGNVQQRGYEVHYDVAGRRLGFGPGNCS 478
               P +   LG  Q     V +D+A  R+GF   +  
Sbjct: 351 GGMQPRAEITLGARQLEENLVVFDLARSRVGFSTSSLH 388
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query478
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.87
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.63
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 88.2
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 87.37
2hs1_A99 HIV-1 protease; ultra-high resolution active site 82.53
1fmb_A104 EIAV protease; hydrolase (acid proteinase), RNA-di 82.32
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=1.5e-63  Score=517.15  Aligned_cols=347  Identities=23%  Similarity=0.401  Sum_probs=288.8

Q ss_pred             CCcceeeeeeecCCCCeeEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhh
Q 011746          111 KSKSFQFPAKINNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCR  190 (478)
Q Consensus       111 ~~~~~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~  190 (478)
                      ..+.+.+|++... .+++|+++|+||||+|++.|+|||||+++||+|++|             .+|+||+.++|+++.|.
T Consensus         5 ~~~~~~~pv~~d~-~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c-------------~~Sst~~~v~C~s~~C~   70 (413)
T 3vla_A            5 RPSALVVPVKKDA-STLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN-------------YVSSTYRPVRCRTSQCS   70 (413)
T ss_dssp             CCSEEEEEEEECT-TTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS-------------CCCTTCEECBTTSHHHH
T ss_pred             CCccEEEEeeecC-CCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC-------------CCCCCcCccCCCccccc
Confidence            4567889998742 789999999999999999999999999999999976             37999999999999999


Q ss_pred             hhhcCCCCC------CCCCCCCCCCCceeec-CCCCceeeEEEEEEEEEccCCCC---CceeccceeeeeeecC--CCCC
Q 011746          191 ILRKLLPPN------GQDNCSSEECPYNIAY-ADNSSDGGFWAADRITIQEANRD---GYFSWYPFLLGCTNNN--TSDQ  258 (478)
Q Consensus       191 ~~~~~~~~~------~~~~C~~~~c~~~~~Y-gdgs~~~G~~~~Dtltl~~~~~~---~~~~~~~~~FGc~~~~--~g~~  258 (478)
                      ....  +..      ...+|.++.|.|.+.| +||+.+.|++++|+|+|+....+   ..+.++++.|||++..  .+.+
T Consensus        71 ~~~~--~~~~~c~s~~~~~c~~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~~  148 (413)
T 3vla_A           71 LSGS--IACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLA  148 (413)
T ss_dssp             HTTC--CEEECCSSCCBTTBCSSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTSC
T ss_pred             cccc--CCCcccccCCCCCCCCCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCcc
Confidence            8652  100      1135666679999999 58889999999999999532111   1356899999999986  4566


Q ss_pred             CCcceEEecCCCCCccccccccc-----cceEeccCCCCCccEEEeCCCCC-c-----CCCC-ceEeeceeCCCC-----
Q 011746          259 NGASGIMGLDRSPISIISQTNTS-----YFSYCLPSPYGSTGYITFGRPDA-V-----NSKF-IKYTPIITTPEQ-----  321 (478)
Q Consensus       259 ~~~~GilGLg~~~~Sl~sQl~~~-----~FS~cL~~~~~~~G~L~fG~~d~-~-----~~~~-~~~tpl~~~~~~-----  321 (478)
                      ..++||||||++++|+++|+..+     .|||||++.....|.|+||+.|. .     +.++ +.||||+.++..     
T Consensus       149 ~~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~  228 (413)
T 3vla_A          149 SGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATS  228 (413)
T ss_dssp             TTCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSC
T ss_pred             cccccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCccccccc
Confidence            78999999999999999998863     29999998655689999999875 2     4667 999999987533     


Q ss_pred             -----CccEEEEEeEEEECCeEeeeCccccc-----CCceEEeccCceeecCHHHHHHHHHHHHHHhh--ccccCCCCCC
Q 011746          322 -----SEYYDITITGISVGGEKLPFNSTYIT-----KLSAIIDSGNEITRLPSPIYAALRSAFRKRMM--KYKKTKADDE  389 (478)
Q Consensus       322 -----~~~y~v~l~gi~vgg~~l~i~~~~~~-----~~~~iiDSGT~~t~lp~~~~~~l~~~~~~~~~--~~~~~~~~~~  389 (478)
                           +.+|+|+|++|+||++.+.+++..|.     .+++||||||++|+||+++|++|+++|.+++.  ++++..+  .
T Consensus       229 ~~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~--~  306 (413)
T 3vla_A          229 TQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVAS--V  306 (413)
T ss_dssp             CTTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECC--C
T ss_pred             cccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCC--C
Confidence                 27999999999999999998877664     36899999999999999999999999999875  4554444  4


Q ss_pred             CCcccceecCCCcc----cccCeEEEEEcC-CcEEEecCCceEEEeCCCeEEEEEEecCCC-CCeeeechhhhcceEEEE
Q 011746          390 DDFDTCYDLSAYET----VVVPKITFHFLG-GVDLELDVRGTLVVFSVSQVCLAFAIFPSD-PNSISLGNVQQRGYEVHY  463 (478)
Q Consensus       390 ~~~d~C~~~~~~~~----~~~P~i~~~f~g-g~~~~l~~~~~~~~~~~~~~Cl~~~~~~~~-~~~~IlG~~fl~~~~vvf  463 (478)
                      ..++.||+.++...    ..+|+|+|+|+| +++++|++++|+++.+.+..|++|...+.. .+.||||++|||++|+||
T Consensus       307 ~~~~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~vvf  386 (413)
T 3vla_A          307 APFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQF  386 (413)
T ss_dssp             TTCSCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEETTEEEECEEEEESSCSSSEEECHHHHTTEEEEE
T ss_pred             CCCcceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeCCCcEEEEEEecCCCcccceeEehhhhcCeEEEE
Confidence            55778999876532    589999999977 589999999999987667899998876432 357999999999999999


Q ss_pred             eCCCCEEEEeeC
Q 011746          464 DVAGRRLGFGPG  475 (478)
Q Consensus       464 D~~~~rIGFa~~  475 (478)
                      |++++|||||++
T Consensus       387 D~~~~riGfa~~  398 (413)
T 3vla_A          387 DLATSRVGFSGT  398 (413)
T ss_dssp             ETTTTEEEEEEE
T ss_pred             ECCCCEEEEEEe
Confidence            999999999985
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 478
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 9e-54
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 6e-41
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 3e-37
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 1e-35
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 3e-34
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 8e-34
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 1e-33
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 4e-33
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 2e-32
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 4e-32
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 8e-32
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 1e-30
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 2e-30
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 3e-30
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 7e-30
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 9e-30
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 9e-30
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 1e-29
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 1e-28
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 3e-28
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 4e-26
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 2e-24
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  182 bits (463), Expect = 9e-54
 Identities = 66/377 (17%), Positives = 118/377 (31%), Gaps = 42/377 (11%)

Query: 122 NNTAVDEYYIVVAIGEPKQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSK 181
            + A   Y I    G       L+LD    L W+ C      ++          +  +  
Sbjct: 9   KDPATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPA 63

Query: 182 IPCNSASCRILRKLLPPNGQDNCSSEECPYNIAYADNSSDGGFWAADRITIQEANRDGYF 241
             C + SC          G D        Y       +   G  +  R      +     
Sbjct: 64  PGCPAPSC----------GSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPV 113

Query: 242 SWYPFLLGCTNNNTSDQNG----ASGIMGLDRSPISIISQTNTSY-----FSYCLPSPYG 292
           S     +      +         ++G+ GL  S +++ +Q  ++      F  CLP+   
Sbjct: 114 SKVNVGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGP 173

Query: 293 STGYITFGRPDAVN-SKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSA 351
                  G       ++ + YTP++T    S  + I+   I VG  ++P     +     
Sbjct: 174 GVAIFGGGPVPWPQFTQSMPYTPLVTKG-GSPAHYISARSIVVGDTRVPVPEGALATGGV 232

Query: 352 IIDSGNEITRLPSPIYAALRSAFRKRMMKYKK------TKADDEDDFDTCYDLSAYE--- 402
           ++ +      L   +Y  L  AF K +              +    F  CYD        
Sbjct: 233 MLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNL 292

Query: 403 -TVVVPKITFHFLGGVDLELDVRGTLVVFSVSQVCLAFAIF------PSDPNSISLGNVQ 455
               VP +     GG D  +  + ++V       C+AF              ++ LG  Q
Sbjct: 293 GGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQ 352

Query: 456 QRGYEVHYDVAGRRLGF 472
              + + +D+  +RLGF
Sbjct: 353 MEDFVLDFDMEKKRLGF 369
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query478
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=3.6e-56  Score=453.51  Aligned_cols=348  Identities=22%  Similarity=0.321  Sum_probs=269.5

Q ss_pred             eEEEEEcCcCCCCCCCCCCCCchhhHHhhhhhhhhhhhhhhhc-cCCCccccCCcceeeeeeecCCCCeeEEEEEEeCCC
Q 011746           60 ASLEVVSKYGPCSRLNKGMSTHTPPLRKGRQRFHSENSRRLQK-AIPDNYLQKSKSFQFPAKINNTAVDEYYIVVAIGEP  138 (478)
Q Consensus        60 ~~~~l~h~~~~~sp~~~~~~~~~~~l~~d~~R~~~l~~~r~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~Y~~~v~iGtP  138 (478)
                      +++||+++           +++++.++++..+.++++. |... .....+.........|+...  .+.+|+++|.||||
T Consensus         2 v~ipl~k~-----------~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~n~--~d~~Y~~~i~iGtP   67 (370)
T d3psga_           2 VKVPLVRK-----------KSLRQNLIKDGKLKDFLKT-HKHNPASKYFPEAAALIGDEPLENY--LDTEYFGTIGIGTP   67 (370)
T ss_dssp             EEEEEEEC-----------CCHHHHHHHTTCHHHHHHH-CCCCGGGGTCTTSCCSSCCCTTGGG--TTCCEEEEEEETTT
T ss_pred             EEEecccC-----------ccHHHHHHHcCcHHHHHHh-cccchhhhhcccccCcccccccccc--cCCEEEEEEEEcCC
Confidence            46777665           4577888888777777654 2110 00001111222233455442  67899999999999


Q ss_pred             CcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCccccccCCChhhhhhhcCCCCCCCCCCCCCCCCceeecCCC
Q 011746          139 KQYVSLLLDTGSDLTWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSASCRILRKLLPPNGQDNCSSEECPYNIAYADN  218 (478)
Q Consensus       139 ~q~~~v~~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~~~c~~~~~Ygdg  218 (478)
                      +|++.|++||||+++||+|++|..|..+.++.|||++|+||+..                    +     |.|.+.|++|
T Consensus        68 ~Q~~~vi~DTGSs~~Wv~~~~C~~~~~~~~~~yd~~~Sst~~~~--------------------~-----~~~~~~Yg~G  122 (370)
T d3psga_          68 AQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEAT--------------------S-----QELSITYGTG  122 (370)
T ss_dssp             TEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEE--------------------E-----EEEEEESSSC
T ss_pred             CeEEEEEEeCCCCCeEEECccCCCcccccccccCCCcccccccC--------------------C-----CcEEEEeCCc
Confidence            99999999999999999999999988888899999999999887                    3     7899999999


Q ss_pred             CceeeEEEEEEEEEccCCCCCceeccceeeeeeecCCCCC---CCcceEEecCCCCCc------ccccccccc------c
Q 011746          219 SSDGGFWAADRITIQEANRDGYFSWYPFLLGCTNNNTSDQ---NGASGIMGLDRSPIS------IISQTNTSY------F  283 (478)
Q Consensus       219 s~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGLg~~~~S------l~sQl~~~~------F  283 (478)
                       .+.|.+++|++++ +...     ++++.|||+....+.+   ...+||+|||+...+      ++.++..+.      |
T Consensus       123 -s~~G~~~~d~~~~-~~~~-----~~~~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~~~~~~~~~~~~l~~~~~i~~~~f  195 (370)
T d3psga_         123 -SMTGILGYDTVQV-GGIS-----DTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLF  195 (370)
T ss_dssp             -EEEEEEEEEEEEE-TTEE-----EEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEE
T ss_pred             -eEEEEEEEEEEee-ecee-----eeeeEEEEEeeccCceecccccccccccccCcccccCCCchhhhhhhhccccccee
Confidence             6899999999999 4445     8999999999887654   578999999987543      333333222      9


Q ss_pred             eEeccCCCCCccEEEeCCCCC-cCCCCceEeeceeCCCCCccEEEEEeEEEECCeEeeeCcccccCCceEEeccCceeec
Q 011746          284 SYCLPSPYGSTGYITFGRPDA-VNSKFIKYTPIITTPEQSEYYDITITGISVGGEKLPFNSTYITKLSAIIDSGNEITRL  362 (478)
Q Consensus       284 S~cL~~~~~~~G~L~fG~~d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gi~vgg~~l~i~~~~~~~~~~iiDSGT~~t~l  362 (478)
                      |+|+.+.....|.|+||++|+ ++.+++.|+|+..    ..+|.|.+++|.++|+.+.....    ..+||||||++++|
T Consensus       196 s~~l~~~~~~~g~l~~Gg~d~~~~~~~l~~~p~~~----~~~w~v~~~~i~v~g~~~~~~~~----~~aiiDSGTs~~~l  267 (370)
T d3psga_         196 SVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSV----EGYWQITLDSITMDGETIACSGG----CQAIVDTGTSLLTG  267 (370)
T ss_dssp             EEEEC-----CEEEEETCCCGGGBSSCCEEEECSE----ETTEEEEECEEESSSSEEECTTC----EEEEECTTCCSEEE
T ss_pred             EEEeecCCCCCceEecCCcCchhcccceeEEeecc----cceEEEEEeeEEeCCeEEecCCC----ccEEEecCCceEeC
Confidence            999998777789999999998 8899999999977    67999999999999988765433    35999999999999


Q ss_pred             CHHHHHHHHHHHHHHhhccccCCCCCCCCcccceecCCCcccccCeEEEEEcCCcEEEecCCceEEEeCCCeEEE-EEEe
Q 011746          363 PSPIYAALRSAFRKRMMKYKKTKADDEDDFDTCYDLSAYETVVVPKITFHFLGGVDLELDVRGTLVVFSVSQVCL-AFAI  441 (478)
Q Consensus       363 p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl-~~~~  441 (478)
                      |+++|++|++++.+.    ....+  .+.+ .|+     ....+|+|+|+| ||+++.|++++|+++.+  ..|+ +|..
T Consensus       268 p~~~~~~i~~~l~~~----~~~~~--~~~~-~C~-----~~~~~P~l~f~f-~g~~~~l~~~~yi~~~~--~~c~~~~~~  332 (370)
T d3psga_         268 PTSAIANIQSDIGAS----ENSDG--EMVI-SCS-----SIDSLPDIVFTI-DGVQYPLSPSAYILQDD--DSCTSGFEG  332 (370)
T ss_dssp             EHHHHHHHHHHTTCE----ECTTC--CEEC-CGG-----GGGGCCCEEEEE-TTEEEEECHHHHEEECS--SCEEESEEE
T ss_pred             CHHHHHHHHHHhCCe----eecCC--cEEE-ecc-----ccCCCceEEEEE-CCEEEEEChHHeEEEcC--CeEEEEEEE
Confidence            999999999887654    22223  2333 365     446799999999 56999999999999863  4474 5654


Q ss_pred             cC---CCCCeeeechhhhcceEEEEeCCCCEEEEeeCC
Q 011746          442 FP---SDPNSISLGNVQQRGYEVHYDVAGRRLGFGPGN  476 (478)
Q Consensus       442 ~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~  476 (478)
                      ..   ...+.||||++|||++|+|||.+++||||||++
T Consensus       333 ~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfAp~a  370 (370)
T d3psga_         333 MDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA  370 (370)
T ss_dssp             ECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             cccCCCCCCcEEECHHhhcCEEEEEECCCCEEEEEecC
Confidence            32   234579999999999999999999999999974
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure