Citrus Sinensis ID: 011749

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
MWLLFHVLSAALLFASSPFGDSRTTPHASISVTTTTLDVSASIQNTLKPFSFDPRTTPQSLISSSSSSLALQLHSRTSVQRTSHNDYKSLTLARLERDSARVRSLSARLDLAIRGIATSDLKPLDSGSEFEAEEIQGPIVSGSSQGSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYEVSYGDGSYTTVTLGSASVDNIAIGCGHNNEGLFVGAAGLLGLGGGLLSFPSQINASTFSYCLVDRDSDSTSTLEFDSSLPPNAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDSNGTFCFAFAPTSSSLSIIGNVQQQGTRVSFNLRNSLVGFTPNKC
cHHHHHHHHHHHHHcccccccccccccccccccEEEEEEHHHHHccccccccccccccccccccccccEEEEEEccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEEcccccEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEcccccccEEEccccccccccccccEEEEcccccccccccccccccEEEEccccccccEEEEcccccccccEEEcccccccccccEEEEEEEEEEccEEEccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEccccEEEEccccEEEEEcccccEEEEEEccccccEEEEEEEEEcEEEEEEccccEEEEEcccc
ccHHHHHHHHHHHHccccccccccccccccccccEEEEHHHHHHccccccccccccccccccccccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccHcccccccccccccccccccccEEEEEEEEccccccEEEEEEcccccEEEEccccHHHHccccccccccccccccEcccccHHHHccccccccccccEEEEEEccccccEEEEEEEEEccEEEEEcccccccccccccEEEccccccccHHHccccEEEEEEcccccccccEEEEccccccccccccEEccccccEEEEEEEEEEEEccEEEEccHHHHEEccccccEEEEEcccEEEEccHHHHHHHHHHHHHHHccccccccccccccEEEcccccccEccEEEEEEccccEEcccHcHEEEEEccccEEEEEEccccccEEEEEEEEEccEEEEEEccccEEEEccccc
MWLLFHVLSAALLfasspfgdsrttphasisVTTTTLDVSASIQntlkpfsfdprttpqslisssssslalqlhsrtsvqrtshndykslTLARLERDSARVRSLSARLDLAIRGIatsdlkpldsgsefeaeeiqgpivsgssqgsgeyfsrvgigkppsqvYMVLDtgsdvnwlqcapcadcyqqadpifeptssssyspltcntkqcqsldesecrnntclyevsygdgsytTVTLgsasvdniaigcghnneglfVGAAGLlglgggllsfpsqinastfsyclvdrdsdststlefdsslppnavtapllrnheldtfYYLGLTGisvggdllpisetafkidesgnggiivdsGTAVTRLQTETYNALRDAFVRgtralsptdgvalfdtcydfssrssvevptvsfhfpegkvlplpaknflipvdsngtfcfafaptssslsIIGNVQQQGTRVSFNLrnslvgftpnkc
MWLLFHVLSAALLFASSPFGDSRTTPHASISVTTTTLDVSASIQNTLKPFSFDPRTTPQSLISSSSSSLALQLHsrtsvqrtshndyksltlarlerdsARVRSLSARLDLAIRGIATSDLKPLDSGSEFEAEEiqgpivsgssqgsGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFeptssssysplTCNTKQCQSLDESECRNNTCLYEVSYGDGSYTTVTLGSASVDNIAIGCGHNNEGLFVGAAGLLGLGGGLLSFPSQINASTFSYCLVDRDSDSTStlefdsslppnavTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRgtralsptdgVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDSNGTFCFAFAPTSSSLSIIGNVQQQGTRVSFnlrnslvgftpnkc
MWLLFHVLSAALLFASSPFGDSRTTPHASISVTTTTLDVSASIQNTLKPFSFDPRTTPQslisssssslalqlhsRTSVQRTSHNDYKSLTLARLERDSARVRSLSARLDLAIRGIATSDLKPLDSGSEFEAEEIQGPIVSGSSQGSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYEVSYGDGSYTTVTLGSASVDNIAIGCGHNNEGLFVgaagllglgggllSFPSQINASTFSYCLVDRDSDSTSTLEFDSSLPPNAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDSNGTFCFAFAPTSSSLSIIGNVQQQGTRVSFNLRNSLVGFTPNKC
*WLLFHVLSAALLFASSP******************L**********************************************************************RLDLAIRGI*********************************YFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQ*****************************ECRNNTCLYEVSYGDGSYTTVTLGSASVDNIAIGCGHNNEGLFVGAAGLLGLGGGLLSFPSQINASTFSYCLVDR*****************AVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDSNGTFCFAFAPTSSSLSIIGNVQQQGTRVSFNLRNSLV*******
MWLLFHVLSAALLFASSPF****************TLDVSASI*****************************LH*******************************************************************GSSQGSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQAD*IF****SS**SPLTCNTKQCQSL*E*ECRNNTCLYEVSYGDGSYTTVTLGSASVDNIAIGCGHNNEGLFVGAAGLLGLGGGLLSFPSQINASTFSYCLVD*************SLPPNAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVR**********VALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDSNGTFCFAFAPTSSSLSIIGNVQQQGTRVSFNLRNSLVGFTPNKC
MWLLFHVLSAALLFASSPFGDSRTTPHASISVTTTTLDVSASIQNTLKPFSFDP******************************NDYKSLTLARLERDSARVRSLSARLDLAIRGIATSDLKPLDSGSEFEAEEIQGPIVSGSSQGSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYEVSYGDGSYTTVTLGSASVDNIAIGCGHNNEGLFVGAAGLLGLGGGLLSFPSQINASTFSYCLVDRD***********SLPPNAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDSNGTFCFAFAPTSSSLSIIGNVQQQGTRVSFNLRNSLVGFTPNKC
MWLLFHVLSAALLFASSPF**S*********VTTTTLDVSASIQN*********************SSLALQLHSRTSVQRTSHNDYKSLTLARLERDSARVRSLSARLDLAIRG*********D*******EEIQGPIVSGSSQGSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYEVSYGDGSYTTVTLGSASVDNIAIGCGHNNEGLFVGAAGLLGLGGGLLSFPSQINASTFSYCLVDRDSDSTSTLEFDSSLPPNAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDSNGTFCFAFAPTSSSLSIIGNVQQQGTRVSFNLRNSLVGFTPNKC
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MWLLFHVLSAALLFASSPFGDSRTTPHASISVTTTTLDVSASIQNTLKPFSFDPRTTPQSLISSSSSSLALQLHSRTSVQRTSHNDYKSLTLARLERDSARVRSLSARLDLAIRGIATSDLKPLDSGSEFEAEEIQGPIVSGSSQGSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYEVSYGDGSYTTVTLGSASVDNIAIGCGHNNEGLFVGAAGLLGLGGGLLSFPSQINASTFSYCLVDRDSDSTSTLEFDSSLPPNAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDSNGTFCFAFAPTSSSLSIIGNVQQQGTRVSFNLRNSLVGFTPNKC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query478 2.2.26 [Sep-21-2011]
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.930 0.89 0.579 1e-147
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.847 0.861 0.477 9e-99
Q766C2438 Aspartic proteinase nepen N/A no 0.748 0.817 0.382 2e-66
Q766C3437 Aspartic proteinase nepen N/A no 0.792 0.867 0.373 5e-66
Q6XBF8437 Aspartic proteinase CDR1 no no 0.677 0.741 0.393 8e-50
Q3EBM5447 Probable aspartic proteas no no 0.822 0.879 0.301 6e-40
Q9LZL3453 Aspartic proteinase PCS1 no no 0.652 0.688 0.317 3e-29
Q9S9K4475 Aspartic proteinase-like no no 0.661 0.665 0.243 5e-21
Q9LX20528 Aspartic proteinase-like no no 0.652 0.590 0.258 9e-19
A2ZC67410 Aspartic proteinase Asp1 N/A no 0.652 0.760 0.234 1e-12
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function desciption
 Score =  523 bits (1347), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 270/466 (57%), Positives = 354/466 (75%), Gaps = 21/466 (4%)

Query: 34  TTTLDVSASIQNTLKPFSFDPR------TTPQSL----ISSSSSSLALQLHSRTSVQRTS 83
           T  LDV +S+Q T    S DP       T P+SL      +SSS L+L+LHSR +   + 
Sbjct: 35  TNVLDVVSSLQQTQTILSLDPTRSSLTTTKPESLSDPVFFNSSSPLSLELHSRDTFVASQ 94

Query: 84  HNDYKSLTLARLERDSARVRSLSARLDLAIRGIATSDLKPL-DSGSEFEAEEIQGPIVSG 142
           H DYKSLTL+RLERDS+RV  + A++  A+ G+  SDLKP+ +  + ++ E++  P+VSG
Sbjct: 95  HKDYKSLTLSRLERDSSRVAGIVAKIRFAVEGVDRSDLKPVYNEDTRYQTEDLTTPVVSG 154

Query: 143 SSQGSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSP 202
           +SQGSGEYFSR+G+G P  ++Y+VLDTGSDVNW+QC PCADCYQQ+DP+F PTSSS+Y  
Sbjct: 155 ASQGSGEYFSRIGVGTPAKEMYLVLDTGSDVNWIQCEPCADCYQQSDPVFNPTSSSTYKS 214

Query: 203 LTCNTKQCQSLDESECRNNTCLYEVSYGDGSYT-------TVTLG-SASVDNIAIGCGHN 254
           LTC+  QC  L+ S CR+N CLY+VSYGDGS+T       TVT G S  ++N+A+GCGH+
Sbjct: 215 LTCSAPQCSLLETSACRSNKCLYQVSYGDGSFTVGELATDTVTFGNSGKINNVALGCGHD 274

Query: 255 NEGLFVGAAGLLGLGGGLLSFPSQINASTFSYCLVDRDSDSTSTLEFDS-SLPPNAVTAP 313
           NEGLF GAAGLLGLGGG+LS  +Q+ A++FSYCLVDRDS  +S+L+F+S  L     TAP
Sbjct: 275 NEGLFTGAAGLLGLGGGVLSITNQMKATSFSYCLVDRDSGKSSSLDFNSVQLGGGDATAP 334

Query: 314 LLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNA 373
           LLRN ++DTFYY+GL+G SVGG+ + + +  F +D SG+GG+I+D GTAVTRLQT+ YN+
Sbjct: 335 LLRNKKIDTFYYVGLSGFSVGGEKVVLPDAIFDVDASGSGGVILDCGTAVTRLQTQAYNS 394

Query: 374 LRDAFVRGTRALSP-TDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPV 432
           LRDAF++ T  L   +  ++LFDTCYDFSS S+V+VPTV+FHF  GK L LPAKN+LIPV
Sbjct: 395 LRDAFLKLTVNLKKGSSSISLFDTCYDFSSLSTVKVPTVAFHFTGGKSLDLPAKNYLIPV 454

Query: 433 DSNGTFCFAFAPTSSSLSIIGNVQQQGTRVSFNLRNSLVGFTPNKC 478
           D +GTFCFAFAPTSSSLSIIGNVQQQGTR++++L  +++G + NKC
Sbjct: 455 DDSGTFCFAFAPTSSSLSIIGNVQQQGTRITYDLSKNVIGLSGNKC 500
Aspartic protease involved in drought avoidance through abscisic acid signaling.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 Back     alignment and function description
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query478
224111722484 predicted protein [Populus trichocarpa] 0.991 0.979 0.723 0.0
255576511479 Aspartic proteinase nepenthesin-1 precur 0.930 0.929 0.760 0.0
449434646486 PREDICTED: protein ASPARTIC PROTEASE IN 0.933 0.917 0.722 1e-180
449530542486 PREDICTED: LOW QUALITY PROTEIN: protein 0.933 0.917 0.720 1e-179
356502456484 PREDICTED: aspartic proteinase nepenthes 0.949 0.938 0.677 1e-174
356498306484 PREDICTED: aspartic proteinase nepenthes 0.943 0.931 0.677 1e-174
225423917491 PREDICTED: aspartic proteinase nepenthes 0.926 0.902 0.715 1e-173
15222611483 aspartyl protease-like protein [Arabidop 0.951 0.942 0.668 1e-171
297845610486 aspartyl protease family protein [Arabid 0.964 0.948 0.658 1e-167
118484458499 unknown [Populus trichocarpa] 0.949 0.909 0.591 1e-151
>gi|224111722|ref|XP_002315953.1| predicted protein [Populus trichocarpa] gi|222864993|gb|EEF02124.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/488 (72%), Positives = 416/488 (85%), Gaps = 14/488 (2%)

Query: 1   MWLLFHVLSAALLFASSPFGDSRT-TPHASISVTTTTLDVSASIQNTLKPFSFDPRTTP- 58
           M LLF+V   +L FAS P   SR  TPH S    TT LDV+ASIQ T   FS  P+ +P 
Sbjct: 1   MGLLFYVF-FSLFFASPPVSCSRILTPHPS---ETTVLDVAASIQRTKNIFSSGPKMSPF 56

Query: 59  -QSLISSSSSSLALQLHSRTSVQRTSHNDYKSLTLARLERDSARVRSLSARLDLAIRGIA 117
            Q    ++SS L ++L SRTS+Q+T+H  YKSLTL+RL+RDSARV+SL  RLDLAI  I+
Sbjct: 57  NQQEKETTSSELTVELLSRTSIQKTTHTGYKSLTLSRLQRDSARVKSLVTRLDLAINSIS 116

Query: 118 TSDLKPLDSGSEFEAEEIQGPIVSGSSQGSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQ 177
           +SDLKPL++ SEF+ E++Q PI+SG+SQGSGEYFSRVGIGKPPSQ Y++LDTGSDVNW+Q
Sbjct: 117 SSDLKPLETDSEFKPEDLQSPIISGTSQGSGEYFSRVGIGKPPSQAYLILDTGSDVNWVQ 176

Query: 178 CAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYEVSYGDGSYT-- 235
           CAPCADCYQQADPIFEP SS+S+S L+CNT+QC+SLD SECRN+TCLYEVSYGDGSYT  
Sbjct: 177 CAPCADCYQQADPIFEPASSASFSTLSCNTRQCRSLDVSECRNDTCLYEVSYGDGSYTVG 236

Query: 236 -----TVTLGSASVDNIAIGCGHNNEGLFVGAAGLLGLGGGLLSFPSQINASTFSYCLVD 290
                T+TLGSA VDN+AIGCGHNNEGLFVGAAGLLGLGGG LSFPSQINA++FSYCLVD
Sbjct: 237 DFVTETITLGSAPVDNVAIGCGHNNEGLFVGAAGLLGLGGGSLSFPSQINATSFSYCLVD 296

Query: 291 RDSDSTSTLEFDSSLPPNAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDES 350
           RDS+S STLEF+S+LPPNAV+APLLRNH LDTFYY+GLTG+SVGG+L+ I E+AF+IDES
Sbjct: 297 RDSESASTLEFNSTLPPNAVSAPLLRNHHLDTFYYVGLTGLSVGGELVSIPESAFQIDES 356

Query: 351 GNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPT 410
           GNGG+IVDSGTA+TRLQT+ YN+LRDAFV+ TR L  T+G+ALFDTCYD SS+ +VEVPT
Sbjct: 357 GNGGVIVDSGTAITRLQTDVYNSLRDAFVKRTRDLPSTNGIALFDTCYDLSSKGNVEVPT 416

Query: 411 VSFHFPEGKVLPLPAKNFLIPVDSNGTFCFAFAPTSSSLSIIGNVQQQGTRVSFNLRNSL 470
           VSFHFP+GK LPLPAKN+L+P+DS GTFCFAFAPT+SSLSIIGNVQQQGTRV ++L N L
Sbjct: 417 VSFHFPDGKELPLPAKNYLVPLDSEGTFCFAFAPTASSLSIIGNVQQQGTRVVYDLVNHL 476

Query: 471 VGFTPNKC 478
           VGF PNKC
Sbjct: 477 VGFVPNKC 484

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255576511|ref|XP_002529147.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] gi|223531426|gb|EEF33260.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449434646|ref|XP_004135107.1| PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449530542|ref|XP_004172253.1| PREDICTED: LOW QUALITY PROTEIN: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356502456|ref|XP_003520035.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356498306|ref|XP_003517994.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|225423917|ref|XP_002281973.1| PREDICTED: aspartic proteinase nepenthesin-2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|15222611|ref|NP_173922.1| aspartyl protease-like protein [Arabidopsis thaliana] gi|12321511|gb|AAG50814.1|AC079281_16 hypothetical protein [Arabidopsis thaliana] gi|20466516|gb|AAM20575.1| unknown protein [Arabidopsis thaliana] gi|23198172|gb|AAN15613.1| unknown protein [Arabidopsis thaliana] gi|110736960|dbj|BAF00436.1| hypothetical protein [Arabidopsis thaliana] gi|332192515|gb|AEE30636.1| aspartyl protease-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297845610|ref|XP_002890686.1| aspartyl protease family protein [Arabidopsis lyrata subsp. lyrata] gi|297336528|gb|EFH66945.1| aspartyl protease family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|118484458|gb|ABK94105.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query478
TAIR|locus:2031225483 AT1G25510 [Arabidopsis thalian 0.958 0.948 0.622 9.2e-155
TAIR|locus:2095042500 ASPG1 "ASPARTIC PROTEASE IN GU 0.968 0.926 0.519 5e-131
TAIR|locus:2095365470 AT3G20015 [Arabidopsis thalian 0.809 0.823 0.465 2.9e-96
TAIR|locus:2035297485 AT1G01300 [Arabidopsis thalian 0.809 0.797 0.490 1.8e-94
TAIR|locus:2076745483 AT3G61820 [Arabidopsis thalian 0.569 0.563 0.480 8.7e-65
TAIR|locus:2183730474 AT5G10770 "AT5G10770" [Arabido 0.824 0.831 0.354 4.2e-56
TAIR|locus:2183715464 AT5G10760 [Arabidopsis thalian 0.759 0.782 0.347 1.3e-54
TAIR|locus:2077700535 AT3G59080 "AT3G59080" [Arabido 0.491 0.439 0.329 2e-54
TAIR|locus:2206184445 AT1G31450 [Arabidopsis thalian 0.349 0.375 0.338 6.7e-43
TAIR|locus:504955954447 AT2G35615 [Arabidopsis thalian 0.378 0.404 0.333 4.1e-42
TAIR|locus:2031225 AT1G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1509 (536.3 bits), Expect = 9.2e-155, P = 9.2e-155
 Identities = 293/471 (62%), Positives = 361/471 (76%)

Query:    16 SSPFGDSRTTPHASISVTTTTLDVSASIQNTLKPFSFDPRTTPQXXXXXXXXXXXXXXX- 74
             SS F  SR  P  S + TT+ L+V+ SI  T    SF  R   Q                
Sbjct:    18 SSVF--SRILPETS-TTTTSILNVADSIHRTKYTSSF--RLNQQEEQTHSASSSFSLQLH 72

Query:    75 XRTSVQRTSHNDYKSLTLARLERDSARVRSLSARLDLAIRGIATSDLKPLDSGSEFEAEE 134
              R SV+ T H+DYKSLTLARL RD+ARV+SL  RLDLAI  I+ +DLKP+ +    E ++
Sbjct:    73 SRVSVRGTEHSDYKSLTLARLNRDTARVKSLITRLDLAINNISKADLKPISTMYTTEEQD 132

Query:   135 IQGPIVSGSSQGSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEP 194
             I+ P++SG++QGSGEYF+RVGIGKP  +VYMVLDTGSDVNWLQC PCADCY Q +PIFEP
Sbjct:   133 IEAPLISGTTQGSGEYFTRVGIGKPAREVYMVLDTGSDVNWLQCTPCADCYHQTEPIFEP 192

Query:   195 TSSSSYSPLTCNTKQCQSLDESECRNNTCLYEVSYGDGSYT-------TVTLGSASVDNI 247
             +SSSSY PL+C+T QC +L+ SECRN TCLYEVSYGDGSYT       T+T+GS  V N+
Sbjct:   193 SSSSSYEPLSCDTPQCNALEVSECRNATCLYEVSYGDGSYTVGDFATETLTIGSTLVQNV 252

Query:   248 AIGCGHNNEGLFVXXXXXXXXXXXXXSFPSQINASTFSYCLVDRDSDSTSTLEFDSSLPP 307
             A+GCGH+NEGLFV             + PSQ+N ++FSYCLVDRDSDS ST++F +SL P
Sbjct:   253 AVGCGHSNEGLFVGAAGLLGLGGGLLALPSQLNTTSFSYCLVDRDSDSASTVDFGTSLSP 312

Query:   308 NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQ 367
             +AV APLLRNH+LDTFYYLGLTGISVGG+LL I +++F++DESG+GGII+DSGTAVTRLQ
Sbjct:   313 DAVVAPLLRNHQLDTFYYLGLTGISVGGELLQIPQSSFEMDESGSGGIIIDSGTAVTRLQ 372

Query:   368 TETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKN 427
             TE YN+LRD+FV+GT  L    GVA+FDTCY+ S++++VEVPTV+FHFP GK+L LPAKN
Sbjct:   373 TEIYNSLRDSFVKGTLDLEKAAGVAMFDTCYNLSAKTTVEVPTVAFHFPGGKMLALPAKN 432

Query:   428 FLIPVDSNGTFCFAFAPTSSSLSIIGNVQQQGTRVSFNLRNSLVGFTPNKC 478
             ++IPVDS GTFC AFAPT+SSL+IIGNVQQQGTRV+F+L NSL+GF+ NKC
Sbjct:   433 YMIPVDSVGTFCLAFAPTASSLAIIGNVQQQGTRVTFDLANSLIGFSSNKC 483
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
TAIR|locus:2095042 ASPG1 "ASPARTIC PROTEASE IN GUARD CELL 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095365 AT3G20015 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035297 AT1G01300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076745 AT3G61820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183730 AT5G10770 "AT5G10770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183715 AT5G10760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077700 AT3G59080 "AT3G59080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206184 AT1G31450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955954 AT2G35615 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00101213
hypothetical protein (484 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 1e-128
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 5e-82
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 6e-75
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 2e-43
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 8e-25
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 9e-18
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 5e-16
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 9e-16
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 5e-15
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 4e-09
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 3e-07
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 9e-07
cd05478317 cd05478, pepsin_A, Pepsin A, aspartic protease pro 8e-06
cd05473364 cd05473, beta_secretase_like, Beta-secretase, aspa 2e-04
cd05485329 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi 2e-04
PTZ00165482 PTZ00165, PTZ00165, aspartyl protease; Provisional 5e-04
cd05488320 cd05488, Proteinase_A_fungi, Fungal Proteinase A , 0.001
cd05486316 cd05486, Cathespin_E, Cathepsin E, non-lysosomal a 0.003
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information 
 Score =  372 bits (958), Expect = e-128
 Identities = 158/345 (45%), Positives = 186/345 (53%), Gaps = 61/345 (17%)

Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTK 208
           EY   VG+G P     +++DTGSD+ W+QC PC                           
Sbjct: 1   EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC--------------------------- 33

Query: 209 QCQSLDESECRNNTCLYEVSYGDGSYT-------TVTLG-SASVDNIAIGCGHNNEGLFV 260
                         CLY+VSYGDGSYT       T+TLG S  V   A GCGH+NEGLF 
Sbjct: 34  --------------CLYQVSYGDGSYTTGDLATDTLTLGSSDVVPGFAFGCGHDNEGLFG 79

Query: 261 GAAGLLGLGGGLLSFPSQINAST---FSYCLVDRDSDSTSTLEF--DSSLPPNAVTAPLL 315
           GAAGLLGLG G LS PSQ  +S    FSYCL DR S S+  L F   +S+P  A   P+L
Sbjct: 80  GAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRSSSSSGYLSFGAAASVPAGASFTPML 139

Query: 316 RNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALR 375
            N  + TFYY+GLTGISVGG  LPI   +F     G GG+I+DSGT +TRL    Y ALR
Sbjct: 140 SNPRVPTFYYVGLTGISVGGRRLPIPPASF-----GAGGVIIDSGTVITRLPPSAYAALR 194

Query: 376 DAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDSN 435
           DAF     A     G ++ DTCYD S   SV VPTVS HF  G  + L A   L PVD +
Sbjct: 195 DAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDS 254

Query: 436 GTFCFAFAPTS--SSLSIIGNVQQQGTRVSFNLRNSLVGFTPNKC 478
              C AFA TS    LSIIGNVQQQ  RV +++    +GF P  C
Sbjct: 255 SQVCLAFAGTSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299

Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 299
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>gnl|CDD|133140 cd05473, beta_secretase_like, Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional Back     alignment and domain information
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>gnl|CDD|133153 cd05486, Cathespin_E, Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 478
PLN03146431 aspartyl protease family protein; Provisional 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.97
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.96
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.88
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 97.83
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 95.78
PF1365090 Asp_protease_2: Aspartyl protease 95.54
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 93.97
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 92.41
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 91.25
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 89.45
PF08284135 RVP_2: Retroviral aspartyl protease; InterPro: IPR 89.2
PF11925370 DUF3443: Protein of unknown function (DUF3443); In 87.25
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 86.61
PF00077100 RVP: Retroviral aspartyl protease The Prosite entr 83.41
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 83.31
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.2e-73  Score=593.29  Aligned_cols=382  Identities=37%  Similarity=0.700  Sum_probs=318.7

Q ss_pred             CCCceEEEEecCCCCCCC---CCCCchhHHHHHHHHhHHhHHHHHHHhhhhhcccccCCCCCCCCCCcccccceeecccc
Q 011749           65 SSSSLALQLHSRTSVQRT---SHNDYKSLTLARLERDSARVRSLSARLDLAIRGIATSDLKPLDSGSEFEAEEIQGPIVS  141 (478)
Q Consensus        65 ~~~~~~~~l~h~~~~~~~---~~~~~~~~~~~~~~~d~~R~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  141 (478)
                      ..++++++|+||+++|+|   +..+..++++++++||++|+++|.++...                        ..|+.+
T Consensus        21 ~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~------------------------~~~~~~   76 (431)
T PLN03146         21 PKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDAS------------------------PNDPQS   76 (431)
T ss_pred             cCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcccc------------------------CCcccc
Confidence            345799999999999875   33456688999999999999888654211                        123334


Q ss_pred             CcCCCCeeEEEEEEecCCCcEEEEEEeCCCCcceEeCCCCCCccCCCCCCCCCCCCCCccccCCCCcccCCCCCC-CcCC
Q 011749          142 GSSQGSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDES-ECRN  220 (478)
Q Consensus       142 ~~~~~~g~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~-~C~~  220 (478)
                      +...++++|+++|.||||||++.|+|||||+++||+|.+|..|+.|.++.|||++|+||+.++|.++.|..+... .|..
T Consensus        77 ~~~~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~  156 (431)
T PLN03146         77 DLISNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSD  156 (431)
T ss_pred             CcccCCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCC
Confidence            444567899999999999999999999999999999999999999999999999999999999999999987654 4754


Q ss_pred             -CCceeEEEcCCCcEE-------EEEECC-----eeeeeeEEEEEEcCCCCcc-CCCeEEecCCCCCCcccccC---CCe
Q 011749          221 -NTCLYEVSYGDGSYT-------TVTLGS-----ASVDNIAIGCGHNNEGLFV-GAAGLLGLGGGLLSFPSQIN---AST  283 (478)
Q Consensus       221 -~~c~y~~~Ygdgs~~-------tltlg~-----~~v~~~~fGc~~~~~g~~~-~~~GIlGLg~~~~S~~sql~---~~~  283 (478)
                       +.|.|.+.|+||+.+       +|+|++     ..++++.|||++.+.|.|. ..+||||||++++|+++|+.   .++
T Consensus       157 ~~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~  236 (431)
T PLN03146        157 ENTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGK  236 (431)
T ss_pred             CCCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCc
Confidence             469999999999865       899986     4689999999999888775 47999999999999999986   468


Q ss_pred             eEEEeeCCCC--CCceEEEeCCCCCC---CCeeeecccCCCCCeeEEEEEeEEEEcCeEeecCCcccccccCCCCcEEEc
Q 011749          284 FSYCLVDRDS--DSTSTLEFDSSLPP---NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVD  358 (478)
Q Consensus       284 FS~cL~~~~~--~~~g~L~fG~~d~~---~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~~~~~~iiD  358 (478)
                      |||||++..+  ...|.|+||+....   ++.||||+.+.. +.+|+|+|++|+||+++++++...|.  ..+.+++|||
T Consensus       237 FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l~~~~~~~~--~~~~g~~iiD  313 (431)
T PLN03146        237 FSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKLPYTGSSKN--GVEEGNIIID  313 (431)
T ss_pred             EEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCC-CCeEEEeEEEEEECCEECcCCccccc--cCCCCcEEEe
Confidence            9999975432  34699999986432   589999986532 57999999999999999998877765  3456789999


Q ss_pred             cCcceeeecHHHHHHHHHHHHhhccCCCCCCCccccccccccCCCCccccceEEEEeCCCcEEEeCCCceEEEecCCCcE
Q 011749          359 SGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDSNGTF  438 (478)
Q Consensus       359 SGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~yl~~~~~~~~~  438 (478)
                      |||++++||+++|++|+++|.+++...+.......+++||+...  ...+|+|+||| +|+++.|++++|+++.+ ++.+
T Consensus       314 SGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~--~~~~P~i~~~F-~Ga~~~l~~~~~~~~~~-~~~~  389 (431)
T PLN03146        314 SGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTS--DIKLPIITAHF-TGADVKLQPLNTFVKVS-EDLV  389 (431)
T ss_pred             CCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCC--CCCCCeEEEEE-CCCeeecCcceeEEEcC-CCcE
Confidence            99999999999999999999988764433333334678998532  25789999999 68999999999999876 4678


Q ss_pred             EEEEEeCCCCceEecHhhhcceEEEEeCCCCEEEEeeCCC
Q 011749          439 CFAFAPTSSSLSIIGNVQQQGTRVSFNLRNSLVGFTPNKC  478 (478)
Q Consensus       439 Cl~~~~~~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~C  478 (478)
                      |+++.+. .+.+|||+.|||++||+||++++||||++.+|
T Consensus       390 Cl~~~~~-~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C  428 (431)
T PLN03146        390 CFAMIPT-SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDC  428 (431)
T ss_pred             EEEEecC-CCceEECeeeEeeEEEEEECCCCEEeeecCCc
Confidence            9999876 35699999999999999999999999999999

>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) Back     alignment and domain information
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
3vlb_A413 Crystal Structure Of Xeg-Edgp Length = 413 4e-08
3vla_A413 Crystal Structure Of Edgp Length = 413 4e-08
1qdm_A478 Crystal Structure Of Prophytepsin, A Zymogen Of A B 3e-05
3hd8_A389 Crystal Structure Of The Triticum Aestivum Xylanase 4e-05
1t6e_X381 Crystal Structure Of The Triticum Aestivum Xylanase 9e-05
1b5f_A239 Native Cardosin A From Cynara Cardunculus L. Length 2e-04
3fv3_A339 Secreted Aspartic Protease 1 From Candida Parapsilo 7e-04
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp Length = 413 Back     alignment and structure 
Iteration: 1

 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 150/393 (38%), Gaps = 84/393 (21%)
Query: 149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTK 208
           +Y + +    P     +V+D G    W+      DC Q          SS+Y P+ C T 
Sbjct: 21  QYVTTINQRTPLVSENLVVDLGGRFLWV------DCDQNY-------VSSTYRPVRCRTS 67
Query: 209 QCQSLDES------------ECRNNTC--------LYEVSYGDGSYTTVTL----GSAS- 243
           QC SL  S             C NNTC        +   + G+ +   V++    GS+S 
Sbjct: 68  QC-SLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSG 126
Query: 244 ----VDNIAIGCGHNN--EGLFVXXXXXXXXXXXXXSFPSQINASTFSY------CLVDR 291
               V      C   +  + L               + PSQ  AS FS+      CL   
Sbjct: 127 RVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQF-ASAFSFKRKFAMCL-SG 184
Query: 292 DSDSTSTLEFDS---SLPPNAVTA-------PLLRN----------HELDTFYYLGLTGI 331
            + S S + F +   +  PN + +       PLL N           E    Y++G+  I
Sbjct: 185 STSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSI 244
Query: 332 SVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVR--GTRALSPTD 389
            +   ++ ++ +   I  +G GG  + +    T L+T  Y A+ +AF++    R ++   
Sbjct: 245 KINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVA 304
Query: 390 GVALFDTCYD----FSSRSSVEVPTVSFHF-PEGKVLPLPAKNFLIPVDSNGTFCFAFAP 444
            VA F  C+      S+R    VP++      E  V  +   N ++ ++ N   C     
Sbjct: 305 SVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDN-VVCLGVVD 363
Query: 445 TSSSLS---IIGNVQQQGTRVSFNLRNSLVGFT 474
             S+L    +IG  Q +   V F+L  S VGF+
Sbjct: 364 GGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFS 396
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp Length = 413 Back     alignment and structure
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley Vacuolar Aspartic Proteinase. Length = 478 Back     alignment and structure
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase Length = 389 Back     alignment and structure
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor I Length = 381 Back     alignment and structure
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L. Length = 239 Back     alignment and structure
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In Complex With Pepstatin A Length = 339 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 2e-87
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 5e-77
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 3e-73
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 2e-22
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 3e-22
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 4e-21
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 5e-21
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 6e-19
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 2e-18
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 2e-17
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 4e-17
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 7e-17
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 1e-16
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 2e-16
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 2e-16
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 9e-16
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 4e-15
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 6e-15
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 6e-15
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 1e-14
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 3e-14
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 5e-14
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 7e-14
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 8e-14
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 1e-13
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 3e-13
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 5e-13
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 8e-13
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 2e-12
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 3e-11
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 4e-11
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 9e-10
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  272 bits (696), Expect = 2e-87
 Identities = 66/380 (17%), Positives = 131/380 (34%), Gaps = 44/380 (11%)

Query: 138 PIVSGSSQGSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSS 197
           P+ +  S  +G +++ +    P  QV +++D   +  W+ C           P    T  
Sbjct: 13  PVQNDGS--TGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQC 70

Query: 198 SSYSPLTCNTKQCQSLDESECRNNTC-LYEVSYGDGSYT-------TVTLGS-------- 241
           S  +   C +  C +     C  NTC L   +               + + +        
Sbjct: 71  SRANTHQCLS--CPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQL 128

Query: 242 ---ASVDNIAIGCGHN---NEGLFVGAAGLLGLGGGLLSFPSQINAS-----TFSYCLVD 290
               +V      C  +    +GL     G+ GLG   +S P+Q+ +       F+ CL  
Sbjct: 129 GPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSR 188

Query: 291 RDSDSTSTLEFDSSLPPNAVTAPLLRNHELDT--------FYYLGLTGISVGG-DLLPIS 341
             +   + +  D+           + +    T         Y + +  I +    + P++
Sbjct: 189 YPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVFPLN 248

Query: 342 ETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFS 401
           + +  I  S +GG ++ + T    LQ   Y A    F +     +    VA F  C++ +
Sbjct: 249 KISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCFNSN 308

Query: 402 SRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDSNGTFCFAFAPTSS---SLSIIGNVQQQ 458
             ++     +    P G V  +  ++ ++     G  C           +   +G  Q +
Sbjct: 309 KINAYPSVDLVMDKPNGPVWRISGEDLMVQAQ-PGVTCLGVMNGGMQPRAEITLGARQLE 367

Query: 459 GTRVSFNLRNSLVGFTPNKC 478
              V F+L  S VGF+ +  
Sbjct: 368 ENLVVFDLARSRVGFSTSSL 387
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query478
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.8
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.65
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 91.23
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 90.43
1fmb_A104 EIAV protease; hydrolase (acid proteinase), RNA-di 83.82
2hs1_A99 HIV-1 protease; ultra-high resolution active site 82.51
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=7.4e-62  Score=505.88  Aligned_cols=329  Identities=24%  Similarity=0.465  Sum_probs=277.4

Q ss_pred             cccceeeccccCcCCCCeeEEEEEEecCCCcEEEEEEeCCCCcceEeCCCCCCccCCCCCCCCCCCCCCccccCCCCccc
Q 011749          131 EAEEIQGPIVSGSSQGSGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQC  210 (478)
Q Consensus       131 ~~~~~~~p~~~~~~~~~g~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C  210 (478)
                      ..+.+.+||..+.  .+++|+++|.||||||++.|+|||||+++||+|++|             .+|+||+.++|.++.|
T Consensus         5 ~~~~~~~pv~~d~--~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c-------------~~Sst~~~v~C~s~~C   69 (413)
T 3vla_A            5 RPSALVVPVKKDA--STLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN-------------YVSSTYRPVRCRTSQC   69 (413)
T ss_dssp             CCSEEEEEEEECT--TTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS-------------CCCTTCEECBTTSHHH
T ss_pred             CCccEEEEeeecC--CCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC-------------CCCCCcCccCCCcccc
Confidence            3557889999884  589999999999999999999999999999999875             3799999999999999


Q ss_pred             CCCCCC-----------CcCCCCceeEEEcC-CCcEE-------EEEEC---------CeeeeeeEEEEEEcC--CCCcc
Q 011749          211 QSLDES-----------ECRNNTCLYEVSYG-DGSYT-------TVTLG---------SASVDNIAIGCGHNN--EGLFV  260 (478)
Q Consensus       211 ~~~~~~-----------~C~~~~c~y~~~Yg-dgs~~-------tltlg---------~~~v~~~~fGc~~~~--~g~~~  260 (478)
                      ......           .|.++.|.|.+.|+ ||+.+       +|+|+         +..++++.|||++.+  .+.+.
T Consensus        70 ~~~~~~~~~~c~s~~~~~c~~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~~~  149 (413)
T 3vla_A           70 SLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLAS  149 (413)
T ss_dssp             HHTTCCEEECCSSCCBTTBCSSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTSCT
T ss_pred             cccccCCCcccccCCCCCCCCCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCccc
Confidence            876532           35556799999994 76554       88886         257899999999986  46666


Q ss_pred             CCCeEEecCCCCCCcccccC-----CCeeEEEeeCCCCCCceEEEeCCCCC--------C-C-CeeeecccCCCC-----
Q 011749          261 GAAGLLGLGGGLLSFPSQIN-----ASTFSYCLVDRDSDSTSTLEFDSSLP--------P-N-AVTAPLLRNHEL-----  320 (478)
Q Consensus       261 ~~~GIlGLg~~~~S~~sql~-----~~~FS~cL~~~~~~~~g~L~fG~~d~--------~-~-~~~tpl~~~~~~-----  320 (478)
                      .++||||||++.+|+++||.     .++|||||++. ....|.|+||+.+.        . + +.||||+.++..     
T Consensus       150 ~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~-~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~  228 (413)
T 3vla_A          150 GVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGS-TSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATS  228 (413)
T ss_dssp             TCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSC-SSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSC
T ss_pred             ccccccccCCCCcchHHHHhhhcCCCceEEEeCCCC-CCCceEEEECCCcccccccccccCCceeEeecccCCccccccc
Confidence            78999999999999999987     48999999763 34579999999874        1 4 999999987532     


Q ss_pred             -----CeeEEEEEeEEEEcCeEeecCCcccccccCCCCcEEEccCcceeeecHHHHHHHHHHHHhhcc--CCCCCCCccc
Q 011749          321 -----DTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTR--ALSPTDGVAL  393 (478)
Q Consensus       321 -----~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~~~~~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~--~~~~~~~~~~  393 (478)
                           ..+|+|+|++|+||++.+.++++.|.++.++++++||||||++++||+++|++|+++|.+++.  .++...+...
T Consensus       229 ~~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~  308 (413)
T 3vla_A          229 TQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAP  308 (413)
T ss_dssp             CTTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCCTT
T ss_pred             cccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCCCC
Confidence                 279999999999999999999999988777788999999999999999999999999998764  3444344445


Q ss_pred             cccccccCCCCc----cccceEEEEeCC-CcEEEeCCCceEEEecCCCcEEEEEEeCC---CCceEecHhhhcceEEEEe
Q 011749          394 FDTCYDFSSRSS----VEVPTVSFHFPE-GKVLPLPAKNFLIPVDSNGTFCFAFAPTS---SSLSIIGNVQQQGTRVSFN  465 (478)
Q Consensus       394 ~~~C~~~~~~~~----~~~P~l~f~f~g-g~~~~l~~~~yl~~~~~~~~~Cl~~~~~~---~~~~IlG~~fl~~~yvvfD  465 (478)
                      ++.||+.++...    ..+|+|+|+|.| ++.|+|++++|+++.+ ++.+|++|...+   ++.||||++|||++|+|||
T Consensus       309 ~~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~-~~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~vvfD  387 (413)
T 3vla_A          309 FGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYIN-DNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFD  387 (413)
T ss_dssp             CSCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEE-TTEEEECEEEEESSCSSSEEECHHHHTTEEEEEE
T ss_pred             CcceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeC-CCcEEEEEEecCCCcccceeEehhhhcCeEEEEE
Confidence            678998764432    479999999955 4899999999999876 467899987653   2579999999999999999


Q ss_pred             CCCCEEEEeeC
Q 011749          466 LRNSLVGFTPN  476 (478)
Q Consensus       466 ~~~~rIGFa~~  476 (478)
                      ++++|||||++
T Consensus       388 ~~~~riGfa~~  398 (413)
T 3vla_A          388 LATSRVGFSGT  398 (413)
T ss_dssp             TTTTEEEEEEE
T ss_pred             CCCCEEEEEEe
Confidence            99999999985
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 478
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 7e-46
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 2e-37
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 3e-37
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 8e-36
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 1e-35
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 9e-35
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 6e-34
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 7e-34
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 1e-33
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 7e-33
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 1e-32
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 8e-32
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 9e-32
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 2e-31
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 7e-31
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 4e-30
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 7e-30
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 7e-29
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 2e-28
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 2e-28
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 8e-27
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 2e-20
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  162 bits (409), Expect = 7e-46
 Identities = 66/372 (17%), Positives = 113/372 (30%), Gaps = 58/372 (15%)

Query: 147 SGEYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCN 206
           +  Y      G       +VLD    + W  C       +          +++Y    C 
Sbjct: 13  TSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPAPGCP 67

Query: 207 TKQCQSLDESECRNNTCLYEVSYGDGSYT-------TVTLGSAS--------VDNIAIGC 251
              C S    +       Y  +   G+              +             +   C
Sbjct: 68  APSCGS---DKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAAC 124

Query: 252 GHNNE--GLFVGAAGLLGLGGGLLSFPSQINAST---FSYCLVDRDSDSTSTLEFDSSLP 306
             +     L  G+ G+ GL    L+ P+Q+ ++      + L          +     +P
Sbjct: 125 APSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAIFGGGPVP 184

Query: 307 PNAVTAPL----LRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTA 362
               T  +    L        +Y+    I VG   +P+ E A        GG+++ +   
Sbjct: 185 WPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGAL-----ATGGVMLSTRLP 239

Query: 363 VTRLQTETYNALRDAF--------VRGTRALSPTDGVALFDTCYDFS----SRSSVEVPT 410
              L+ + Y  L DAF          G       + VA F  CYD      +     VP 
Sbjct: 240 YVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPN 299

Query: 411 VSFHFPEGKVLPLPAKNFLIPVDSNGTFCFAFAPT--------SSSLSIIGNVQQQGTRV 462
           V      G    +  KN ++ V   GT C AF            +   I+G  Q +   +
Sbjct: 300 VQLGLDGGSDWTMTGKNSMVDVK-QGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVL 358

Query: 463 SFNLRNSLVGFT 474
            F++    +GF+
Sbjct: 359 DFDMEKKRLGFS 370
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query478
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.2e-53  Score=435.67  Aligned_cols=338  Identities=24%  Similarity=0.385  Sum_probs=266.0

Q ss_pred             eEEEEecCCCCCCCCCCCchhHHHHHHHHhHHhHHHHHHHhhhhhcccccCCCCCCCCCCcccccceeeccccCcCCCCe
Q 011749           69 LALQLHSRTSVQRTSHNDYKSLTLARLERDSARVRSLSARLDLAIRGIATSDLKPLDSGSEFEAEEIQGPIVSGSSQGSG  148 (478)
Q Consensus        69 ~~~~l~h~~~~~~~~~~~~~~~~~~~~~~d~~R~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g  148 (478)
                      +++||+++.+            +++.+.++..+.++++.|...-   ..+..       ..........|+.+.   .+.
T Consensus         2 v~ipl~k~~~------------~r~~~~~~~~~~~~~~~~~~~~---~~~~~-------~~~~~~~~~~~l~n~---~d~   56 (370)
T d3psga_           2 VKVPLVRKKS------------LRQNLIKDGKLKDFLKTHKHNP---ASKYF-------PEAAALIGDEPLENY---LDT   56 (370)
T ss_dssp             EEEEEEECCC------------HHHHHHHTTCHHHHHHHCCCCG---GGGTC-------TTSCCSSCCCTTGGG---TTC
T ss_pred             EEEecccCcc------------HHHHHHHcCcHHHHHHhcccch---hhhhc-------ccccCcccccccccc---cCC
Confidence            5789987642            6777888877777776542210   00000       001122334577653   368


Q ss_pred             eEEEEEEecCCCcEEEEEEeCCCCcceEeCCCCCCccCCCCCCCCCCCCCCccccCCCCcccCCCCCCCcCCCCceeEEE
Q 011749          149 EYFSRVGIGKPPSQVYMVLDTGSDVNWLQCAPCADCYQQADPIFEPTSSSSYSPLTCNTKQCQSLDESECRNNTCLYEVS  228 (478)
Q Consensus       149 ~Y~v~i~iGTP~q~~~lilDTGS~~~Wv~~~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~C~~~~c~y~~~  228 (478)
                      +|+++|.||||||++.|+|||||+++||+|++|..|.++.++.|||++|+||+...                  |.|.+.
T Consensus        57 ~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~~C~~~~~~~~~~yd~~~Sst~~~~~------------------~~~~~~  118 (370)
T d3psga_          57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATS------------------QELSIT  118 (370)
T ss_dssp             CEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEE------------------EEEEEE
T ss_pred             EEEEEEEEcCCCeEEEEEEeCCCCCeEEECccCCCcccccccccCCCcccccccCC------------------CcEEEE
Confidence            99999999999999999999999999999999999999999999999999999876                  899999


Q ss_pred             cCCCcEE------EEEECCeeeeeeEEEEEEcCCCCcc---CCCeEEecCCCCCCccc------------ccCCCeeEEE
Q 011749          229 YGDGSYT------TVTLGSASVDNIAIGCGHNNEGLFV---GAAGLLGLGGGLLSFPS------------QINASTFSYC  287 (478)
Q Consensus       229 Ygdgs~~------tltlg~~~v~~~~fGc~~~~~g~~~---~~~GIlGLg~~~~S~~s------------ql~~~~FS~c  287 (478)
                      |++|+..      ++.+++..++++.|||++...+.+.   +.+||+|||.+..+...            .+..+.||+|
T Consensus       119 Yg~Gs~~G~~~~d~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~  198 (370)
T d3psga_         119 YGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVY  198 (370)
T ss_dssp             SSSCEEEEEEEEEEEEETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEE
T ss_pred             eCCceEEEEEEEEEEeeeceeeeeeEEEEEeeccCceecccccccccccccCcccccCCCchhhhhhhhcccccceeEEE
Confidence            9999987      8899999999999999998876543   47899999986654321            1347899999


Q ss_pred             eeCCCCCCceEEEeCCCCCC----CCeeeecccCCCCCeeEEEEEeEEEEcCeEeecCCcccccccCCCCcEEEccCcce
Q 011749          288 LVDRDSDSTSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAV  363 (478)
Q Consensus       288 L~~~~~~~~g~L~fG~~d~~----~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~~~~~~iiDSGTt~  363 (478)
                      +.+. ....|.|+||++|+.    ++.|+|+..    ..+|.|.+++|.|+++.+...         ++..+||||||++
T Consensus       199 l~~~-~~~~g~l~~Gg~d~~~~~~~l~~~p~~~----~~~w~v~~~~i~v~g~~~~~~---------~~~~aiiDSGTs~  264 (370)
T d3psga_         199 LSSN-DDSGSVVLLGGIDSSYYTGSLNWVPVSV----EGYWQITLDSITMDGETIACS---------GGCQAIVDTGTSL  264 (370)
T ss_dssp             EC------CEEEEETCCCGGGBSSCCEEEECSE----ETTEEEEECEEESSSSEEECT---------TCEEEEECTTCCS
T ss_pred             eecC-CCCCceEecCCcCchhcccceeEEeecc----cceEEEEEeeEEeCCeEEecC---------CCccEEEecCCce
Confidence            9643 345699999999976    799999976    468999999999999887642         3457899999999


Q ss_pred             eeecHHHHHHHHHHHHhhccCCCCCCCccccccccccCCCCccccceEEEEeCCCcEEEeCCCceEEEecCCCcEEE-EE
Q 011749          364 TRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNFLIPVDSNGTFCF-AF  442 (478)
Q Consensus       364 t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~l~f~f~gg~~~~l~~~~yl~~~~~~~~~Cl-~~  442 (478)
                      ++||+++|++|++++.+..    ...+.+.+ .|+...     .+|+|+|+| +|+++.|++++|+++.+   ..|+ +|
T Consensus       265 ~~lp~~~~~~i~~~l~~~~----~~~~~~~~-~C~~~~-----~~P~l~f~f-~g~~~~l~~~~yi~~~~---~~c~~~~  330 (370)
T d3psga_         265 LTGPTSAIANIQSDIGASE----NSDGEMVI-SCSSID-----SLPDIVFTI-DGVQYPLSPSAYILQDD---DSCTSGF  330 (370)
T ss_dssp             EEEEHHHHHHHHHHTTCEE----CTTCCEEC-CGGGGG-----GCCCEEEEE-TTEEEEECHHHHEEECS---SCEEESE
T ss_pred             EeCCHHHHHHHHHHhCCee----ecCCcEEE-eccccC-----CCceEEEEE-CCEEEEEChHHeEEEcC---CeEEEEE
Confidence            9999999999999986543    22333333 588754     689999999 89999999999998754   2364 55


Q ss_pred             EeC-----CCCceEecHhhhcceEEEEeCCCCEEEEeeCC
Q 011749          443 APT-----SSSLSIIGNVQQQGTRVSFNLRNSLVGFTPNK  477 (478)
Q Consensus       443 ~~~-----~~~~~IlG~~fl~~~yvvfD~~~~rIGFa~~~  477 (478)
                      ...     .++.||||++|||++|+|||++++||||||+.
T Consensus       331 ~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfAp~a  370 (370)
T d3psga_         331 EGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA  370 (370)
T ss_dssp             EEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             EEcccCCCCCCcEEECHHhhcCEEEEEECCCCEEEEEecC
Confidence            432     24579999999999999999999999999973
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure