Citrus Sinensis ID: 011755

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
MASIRSLSFMVETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATGAGFVEDESGNEPEDSLQATIEKSKKVLAMQKQLLQQISERRKLVSSIKSDIANSEEDEVSYEERENSFSDLDFTSTSSSNVVENQNGIIPSSSGDHSTANEAPKLQSSAANRGPDAGGKESENRLSPEKESIDIDSSKLLKGTDTQSTWSDELPSFLSRTAVISSPKEERHEKDLDQVQQIDSEPIEPKTEEAKPPPLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQICQDITWTFSNCMTLLEVSTSIFLLLD
cccccccccEEEcccccEEEEEEccccccccccccccccccccEEEcccccccccccccccccccccHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccEEEEEEcccccccccccHHHHHcHHHHHHHHccccEEEEEEcccccccccccccEEEEEEcccEEEEEEEEEEEcccEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccEEEEccHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccHHHcccccccccccccccc
ccccccccEEEEEcccccEEEEcccccccccccccccccccccccEcccccccccccccccccEcccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccHHHccccccccccccccEEEEEEEEcccccccccHHHHHcccHHHHHHcccEEEEEEcccccHHHHccccEEEEEEEccccEEEEEEEEEEccccEEEEccccHccccccccccccccHHHHHHHHHHHHHHcccEccccccccccccEEEEEccHHHHHHHHHHHHHHccccccHccEEEEEEEEHHHccccccccccccccHHccccHHHHHHcc
MASIRSLSFMVETKADSYVVLFsknqyrpsssfsafrpkkspifaflnnsvsgfsfrsnksghllkVKHVkatgagfvedesgnepedsLQATIEKSKKVLAMQKQLLQQISERRKLVSSIKSdianseedevsyeerensfsdldftstsssnvvenqngiipsssgdhstaneapklqssaanrgpdaggkesenrlspekesididsskllkgtdtqstwsdelpsflsrtavisspkeerhekdldqvqqidsepiepkteeakppplaganVMNVILVAAecgpwsktgglgdvagALPKALARRGhrvmvvaphygnyaepqdtgirkryrvdRQDIEVAYFQAYIdgvdfvfldsplfrhlgnniygggrEDILKRMVLFCKAAieipwyvpcggvcygdgnlvFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQICQDITWTFSNCMTLLEVSTSIFLLLD
masirslsfmvETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATgagfvedesgnepEDSLQATIEKSKKVLAMQKQLLQQISErrklvssiksdianseedevsyEERENSFSDLDFTSTSSSNVVENQNGIIPSSSGDHSTANEAPKLQssaanrgpdaggkesenrlspekesididsskllkgtdtqstwsdelpsflsrtavisspkeerhekdldqvqqidsepiepkteeakppplAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVaphygnyaepqdtgirKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQICQDITWTFSNCMTLLEVSTSIFLLLD
MASIRSLSFMVETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATGAGFVEDESGNEPEDSLQATIEKSKKVLAMQKQLLQQISERRKLVSSIKSDIANseedevsyeerensfsdldftstsssnVVENQNGIIPSSSGDHSTANEAPKLQSSAANRGPDAGGKESENRLSPEKESIDIDSSKLLKGTDTQSTWSDELPSFLSRTAVISSPKEERHEKDLDQVQQIDSEPIEPKTEEAKPPPLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQICQDITWTFSNCMTLLEVSTSIFLLLD
********FMVETKADSYVVLFSKN****************PIFAFLNNSVSGFSFRSNKSGHLLKVKHVKAT********************************************************************************************************************************************************************************************************GANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQICQDITWTFSNCMTLLEVSTSIFLLL*
***********ETKADSYV*********************SPIFAFLNNSVSG***********************************SLQATIEKSKKVLAMQKQLLQQISER********************************************************************************************************************************************************************NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQICQDITWTFSNCMTLLEVSTSIFLLLD
MASIRSLSFMVETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATGAGFVE**********LQATIEKSKKVLAMQKQLLQQISERRKLVSSIKS*******************SDLDFTSTSSSNVVENQNGIIPS****************************************IDIDSSKLLKGTDTQSTWSDELPSFLSRTAVIS*************VQQIDSEPIEPKTEEAKPPPLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQICQDITWTFSNCMTLLEVSTSIFLLLD
****RSLSFMVETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATG***********PEDSLQATIEKSKKVLAMQKQLLQQISERRKLVSSIKSD**************************************************************************************************************************************************PLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQICQDITWTFSNCMTLLEVSTSIFLLLD
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASIRSLSFMVETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATGAGFVEDESGNEPEDSLQATIEKSKKVLAMQKQLLQQISERRKLVSSIKSDIANSEEDEVSYEERENSFSDLDFTSTSSSNVVENQNGIIPSSSGDHSTANEAPKLQSSAANRGPDAGGKESENRLSPEKESIDIDSSKLLKGTDTQSTWSDELPSFLSRTAVISSPKEERHEKDLDQVQQIDSEPIEPKTEEAKPPPLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQICQDITWTFSNCMTLLEVSTSIFLLLD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query478 2.2.26 [Sep-21-2011]
Q43847 767 Granule-bound starch synt N/A no 0.861 0.537 0.523 1e-123
Q9MAC8 792 Starch synthase 2, chloro yes no 0.815 0.492 0.534 1e-119
Q43093 752 Granule-bound starch synt N/A no 0.859 0.546 0.531 1e-114
Q0DDE3 810 Soluble starch synthase 2 yes no 0.378 0.223 0.795 1e-88
P0C586 810 Soluble starch synthase 2 N/A no 0.378 0.223 0.795 2e-88
Q6Z2T8 694 Soluble starch synthase 2 no no 0.393 0.270 0.771 9e-87
Q7XE48 749 Soluble starch synthase 2 no no 0.428 0.273 0.695 2e-85
Q9FNF2 652 Starch synthase 1, chloro no no 0.433 0.317 0.422 6e-39
Q43654 647 Starch synthase 1, chloro N/A no 0.357 0.264 0.445 2e-33
A2Y9M4 641 Soluble starch synthase 1 N/A no 0.357 0.266 0.445 1e-32
>sp|Q43847|SSY2_SOLTU Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS2 PE=1 SV=3 Back     alignment and function desciption
 Score =  441 bits (1133), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/466 (52%), Positives = 299/466 (64%), Gaps = 54/466 (11%)

Query: 19  VVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATGAGFV 78
           ++L S NQ+ P+    A RPKK  +               +    + ++K VKATG    
Sbjct: 5   ILLHSGNQFHPNLPLLALRPKKLSLI------------HGSSREQMWRIKRVKATGENSG 52

Query: 79  EDESGNEPEDSLQATIEKSKKVLAMQKQLLQQISERRKLVSSIKSDIANSEEDEVSYEER 138
           E  S +E  D+LQ TIEKSKKVLAMQ+ LLQQI+ERRK+VSSIKS +AN++    +Y+  
Sbjct: 53  EAASADESNDALQVTIEKSKKVLAMQQDLLQQIAERRKVVSSIKSSLANAKG---TYDGG 109

Query: 139 ENSFSDLDFT-----------STSSSNVVENQNGIIPSSSGD---------HSTANE-AP 177
             S SD+D             ST+++ + +      P+ S D            A+E AP
Sbjct: 110 SGSLSDVDIPDVDKDYNVTVPSTAATPITDVDKNTPPAISQDFVESKREIKRDLADERAP 169

Query: 178 KLQSSAANRGPDAGGKESENRL---------SPEKESIDIDSSKLL---KGTDTQSTWSD 225
            L  S+           S  R          S ++  +D++S K L    G   QS    
Sbjct: 170 PLSRSSITASSQISSTVSSKRTLNVPPETPKSSQETLLDVNSRKSLVDVPGKKIQSY--- 226

Query: 226 ELPSFLSRTAVISSPKEERHEKDLDQVQQIDSEPIEPKTEEAKPPPLAGANVMNVILVAA 285
            +PS   R    +S  E+R+E       + + E  +P   + KPPPLAG NVMN+ILVA+
Sbjct: 227 -MPSL--RKESSASHVEQRNENLEGSSAEANEETEDPVNIDEKPPPLAGTNVMNIILVAS 283

Query: 286 ECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEV 345
           EC PWSKTGGLGDVAGALPKALARRGHRVMVVAP Y NY EPQD+G+RK Y+VD QD+EV
Sbjct: 284 ECAPWSKTGGLGDVAGALPKALARRGHRVMVVAPRYDNYPEPQDSGVRKIYKVDGQDVEV 343

Query: 346 AYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCY 405
            YFQA+IDGVDFVF+DS +FRH+GNNIYGG R DILKRMVLFCKAAIE+PW+VPCGGVCY
Sbjct: 344 TYFQAFIDGVDFVFIDSHMFRHIGNNIYGGNRVDILKRMVLFCKAAIEVPWHVPCGGVCY 403

Query: 406 GDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQ 451
           GDGNLVFIANDWHTALLPVYLKAYYRDNG+M YTRS+LVIHNIAHQ
Sbjct: 404 GDGNLVFIANDWHTALLPVYLKAYYRDNGIMNYTRSVLVIHNIAHQ 449
Accounts for only 10 to 15% of the total soluble starch synthase activity in tubers.
Solanum tuberosum (taxid: 4113)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 1
>sp|Q9MAC8|SSY2_ARATH Starch synthase 2, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SS2 PE=2 SV=1 Back     alignment and function description
>sp|Q43093|SSG2_PEA Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1 Back     alignment and function description
>sp|Q0DDE3|SSY23_ORYSJ Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-3 PE=1 SV=1 Back     alignment and function description
>sp|P0C586|SSY23_ORYSI Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=SSII-3 PE=1 SV=1 Back     alignment and function description
>sp|Q6Z2T8|SSY22_ORYSJ Soluble starch synthase 2-2, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-2 PE=2 SV=2 Back     alignment and function description
>sp|Q7XE48|SSY21_ORYSJ Soluble starch synthase 2-1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-1 PE=2 SV=2 Back     alignment and function description
>sp|Q9FNF2|SSY1_ARATH Starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SS1 PE=2 SV=1 Back     alignment and function description
>sp|Q43654|SSY1_WHEAT Starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WSSI-2 PE=2 SV=2 Back     alignment and function description
>sp|A2Y9M4|SSY1_ORYSI Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=OsI_021017 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query478
225452843 772 PREDICTED: granule-bound starch synthase 0.933 0.577 0.610 1e-153
296082929 788 unnamed protein product [Vitis vinifera] 0.933 0.565 0.574 1e-149
6467503 751 granule bound starch synthase II precurs 0.903 0.575 0.615 1e-147
157169069 751 starch synthase isoform II [Manihot escu 0.903 0.575 0.615 1e-147
224141401 742 predicted protein [Populus trichocarpa] 0.884 0.570 0.608 1e-138
255582123 754 starch synthase, putative [Ricinus commu 0.905 0.574 0.577 1e-136
297828626 796 hypothetical protein ARALYDRAFT_477411 [ 0.822 0.493 0.562 1e-122
57015403 767 RecName: Full=Granule-bound starch synth 0.861 0.537 0.523 1e-121
351724957 757 starch synthase IIa-1 [Glycine max] gi|2 0.805 0.508 0.586 1e-118
351725391 774 starch synthase IIa-2 [Glycine max] gi|2 0.933 0.576 0.533 1e-118
>gi|225452843|ref|XP_002278470.1| PREDICTED: granule-bound starch synthase 2, chloroplastic/amyloplastic-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 280/459 (61%), Positives = 338/459 (73%), Gaps = 13/459 (2%)

Query: 1   MASIRSLSFMVETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFS----- 55
           MAS+  +SF+ E  A     ++S    RP  SF  +R + SP  A   +S+ G+S     
Sbjct: 1   MASVGCVSFVTERAAS----IWSGRDRRPRFSFPVYRLRMSPGCAISKDSIFGYSREDCV 56

Query: 56  -FRSNKSGHLLKVKHVKATGAGFVEDESGNEPEDSLQATIEKSKKVLAMQKQLLQQISER 114
            F       +L  + V+A G G VE E G+  ED+  ATIEKSKKVLAMQ+ LLQQI+ER
Sbjct: 57  RFSLCSRRQVLGSRGVRARGEGSVEGEDGDRLEDAFDATIEKSKKVLAMQRDLLQQIAER 116

Query: 115 RKLVSSIKSDIANSEEDEVSYEERENSFSDLDFTSTSSSNVVENQNGIIPSSSGDHSTAN 174
           RKLVSSIKS I N E++EVSY+ R++SF ++D TST  S   E+ NG I S +  HS A+
Sbjct: 117 RKLVSSIKSSIINPEDNEVSYKGRDSSFPNMDLTSTGDSGGDEDYNGGILSGNYVHSNAD 176

Query: 175 EAPKLQSSAANRGPDAGGKESENRLSPEKESIDIDSSKLLKGTDTQSTWSDELPSFLSRT 234
           + P   SSA +RG   G KE    LS E  S+D+++ K LK T  ++ WSD LPSFLS++
Sbjct: 177 KVPAALSSATSRGFGEGEKELGKDLSLENPSLDLEAPKQLKDTSPKTVWSDPLPSFLSKS 236

Query: 235 AVISSPKEERHEKDLDQV--QQIDSEPIEPKTEEAKPPPLAGANVMNVILVAAECGPWSK 292
              +SPKEE+ E D  ++  +++++E      E+ KPPPLAG NVMN+ILVAAEC PWSK
Sbjct: 237 VETASPKEEKQE-DFRELSSEEVNNEAAVSMGEDVKPPPLAGTNVMNIILVAAECAPWSK 295

Query: 293 TGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYI 352
           TGGLGDVAGALPKALARRGHRVMVVAP YGNYAE Q+TG+RK+Y+VD QD+EV YFQAYI
Sbjct: 296 TGGLGDVAGALPKALARRGHRVMVVAPRYGNYAEAQETGVRKKYKVDGQDMEVTYFQAYI 355

Query: 353 DGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVF 412
           DGVDFVF+DS +FRH+  NIYGG R DILKRMVLFCKAAIE+PW+VPCGGVCYGDGNLVF
Sbjct: 356 DGVDFVFIDSHMFRHIEKNIYGGNRMDILKRMVLFCKAAIEVPWHVPCGGVCYGDGNLVF 415

Query: 413 IANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQ 451
           IANDWHTALLPVYLKAYYRDNGLMQYTRS LVIHNIAHQ
Sbjct: 416 IANDWHTALLPVYLKAYYRDNGLMQYTRSALVIHNIAHQ 454

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296082929|emb|CBI22230.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|6467503|gb|AAF13168.1|AF173900_1 granule bound starch synthase II precursor [Manihot esculenta] Back     alignment and taxonomy information
>gi|157169069|gb|ABV25894.1| starch synthase isoform II [Manihot esculenta] Back     alignment and taxonomy information
>gi|224141401|ref|XP_002324061.1| predicted protein [Populus trichocarpa] gi|222867063|gb|EEF04194.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255582123|ref|XP_002531856.1| starch synthase, putative [Ricinus communis] gi|223528506|gb|EEF30534.1| starch synthase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297828626|ref|XP_002882195.1| hypothetical protein ARALYDRAFT_477411 [Arabidopsis lyrata subsp. lyrata] gi|297328035|gb|EFH58454.1| hypothetical protein ARALYDRAFT_477411 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|57015403|sp|Q43847.3|SSY2_SOLTU RecName: Full=Granule-bound starch synthase 2, chloroplastic/amyloplastic; AltName: Full=Granule-bound starch synthase II; Short=GBSS-II; Short=SS II; Flags: Precursor gi|48927500|emb|CAA61241.2| soluble starch synthase II precursor [Solanum tuberosum] Back     alignment and taxonomy information
>gi|351724957|ref|NP_001235796.1| starch synthase IIa-1 [Glycine max] gi|221063670|gb|ACL98479.1| starch synthase IIa-1 precursor [Glycine max] Back     alignment and taxonomy information
>gi|351725391|ref|NP_001235811.1| starch synthase IIa-2 [Glycine max] gi|221063672|gb|ACL98480.1| starch synthase IIa-2 precursor [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query478
TAIR|locus:2102102 792 SS2 "starch synthase 2" [Arabi 0.592 0.357 0.645 3.8e-94
TAIR|locus:2169749 652 SS1 "starch synthase 1" [Arabi 0.453 0.332 0.423 2.1e-37
TAIR|locus:2037950 610 GBSS1 "granule bound starch sy 0.424 0.332 0.409 1.1e-34
UNIPROTKB|Q42968 609 WAXY "Granule-bound starch syn 0.368 0.288 0.427 2.4e-31
TIGR_CMR|GSU_1023 501 GSU_1023 "glycogen synthase" [ 0.345 0.329 0.335 4.3e-15
TIGR_CMR|BA_5120 476 BA_5120 "glycogen synthase" [B 0.341 0.342 0.296 2.5e-12
TIGR_CMR|GSU_3257 484 GSU_3257 "glycogen synthase" [ 0.345 0.340 0.302 4.3e-11
UNIPROTKB|Q9KRB6 484 glgA "Glycogen synthase" [Vibr 0.336 0.332 0.271 9.1e-08
TIGR_CMR|VC_1726 484 VC_1726 "glycogen synthase" [V 0.336 0.332 0.271 9.1e-08
UNIPROTKB|Q9XHN9113 Q9XHN9 "Granule bound starch s 0.071 0.300 0.685 1.2e-06
TAIR|locus:2102102 SS2 "starch synthase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
 Identities = 186/288 (64%), Positives = 212/288 (73%)

Query:   164 PSSSGDHSTANEAPKLQSSAANRGPDAGGKESENRLSPEKESIDIDSSKLLKGTDTQSTW 223
             P    D +T N  P   SS      D   K S    SPEK S  + S      +   + W
Sbjct:   192 PQKPSDVAT-NGKP--WSSVVASSVDPPYKPSSVMTSPEKTSDPVTSPGKPSKSRAGAFW 248

Query:   224 SDELPSFLSRTAVISSPKEERHEKDLDQVQQIDSEPIEPKTEEAKPPPLAGANVMNVILV 283
             SD LPS+L++    S+ K E++ +    V    SE  EP  +E KPPPLAGANVMNVILV
Sbjct:   249 SDPLPSYLTKAPQTSTMKTEKYVEKTPDVAS--SETNEPGKDEEKPPPLAGANVMNVILV 306

Query:   284 AAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDI 343
             AAEC P+SKTGGLGDVAGALPK+LARRGHRVMVV P Y  YAE +D G+RKRY+V  QD+
Sbjct:   307 AAECAPFSKTGGLGDVAGALPKSLARRGHRVMVVVPRYAEYAEAKDLGVRKRYKVAGQDM 366

Query:   344 EVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGV 403
             EV YF A+IDGVDFVF+DSP FRHL NNIYGG R DILKRMVLFCKAA+E+PWYVPCGGV
Sbjct:   367 EVMYFHAFIDGVDFVFIDSPEFRHLSNNIYGGNRLDILKRMVLFCKAAVEVPWYVPCGGV 426

Query:   404 CYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQ 451
             CYGDGNL FIANDWHTALLPVYLKAYYRD+G+M+YTRS+LVIHNIAHQ
Sbjct:   427 CYGDGNLAFIANDWHTALLPVYLKAYYRDHGIMKYTRSVLVIHNIAHQ 474
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0009011 "starch synthase activity" evidence=IMP
GO:0010021 "amylopectin biosynthetic process" evidence=IMP
GO:0001666 "response to hypoxia" evidence=RCA
GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA
GO:0019375 "galactolipid biosynthetic process" evidence=RCA
TAIR|locus:2169749 SS1 "starch synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037950 GBSS1 "granule bound starch synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q42968 WAXY "Granule-bound starch synthase 1, chloroplastic/amyloplastic" [Oryza glaberrima (taxid:4538)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1023 GSU_1023 "glycogen synthase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5120 BA_5120 "glycogen synthase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3257 GSU_3257 "glycogen synthase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KRB6 glgA "Glycogen synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1726 VC_1726 "glycogen synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|Q9XHN9 Q9XHN9 "Granule bound starch synthase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XVII.1126.1
hypothetical protein (688 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pm.C_LG_XIV000240
glucose-1-phosphate adenylyltransferase (EC-2.7.7.27); This protein plays a role in synthesis o [...] (445 aa)
• •  •• 0.952
gw1.V.1420.1
glucose-1-phosphate adenylyltransferase (EC-2.7.7.27); This protein plays a role in synthesis o [...] (475 aa)
• •  •• 0.950
eugene3.00141188
RecName- Full=Glucose-1-phosphate adenylyltransferase; EC=2.7.7.27;; This protein plays a role [...] (523 aa)
• •  •• 0.948
gw1.170.63.1
glucose-1-phosphate adenylyltransferase (EC-2.7.7.27) (428 aa)
• •  •• 0.946
gw1.VII.320.1
glucose-1-phosphate adenylyltransferase (EC-2.7.7.27) (434 aa)
• •  •• 0.945
estExt_fgenesh4_pm.C_LG_II0158
glucose-1-phosphate adenylyltransferase (EC-2.7.7.27); This protein plays a role in synthesis o [...] (528 aa)
• •  •• 0.945
estExt_Genewise1_v1.C_LG_VIII1252
glucose-1-phosphate adenylyltransferase (EC-2.7.7.27); This protein plays a role in synthesis o [...] (528 aa)
• •  •• 0.945
fgenesh4_pg.C_LG_IV001321
glucose-1-phosphate adenylyltransferase (EC-2.7.7.27); This protein plays a role in synthesis o [...] (526 aa)
• •  •• 0.943
estExt_Genewise1_v1.C_LG_IX1717
glucose-1-phosphate adenylyltransferase (EC-2.7.7.27); This protein plays a role in synthesis o [...] (527 aa)
• •  •• 0.943
estExt_fgenesh4_pg.C_LG_IX1158
hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (853 aa)
• •  •• 0.942

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
TIGR02095 473 TIGR02095, glgA, glycogen/starch synthase, ADP-glu 1e-58
cd03791 476 cd03791, GT1_Glycogen_synthase_DULL1_like, This fa 2e-53
pfam08323234 pfam08323, Glyco_transf_5, Starch synthase catalyt 3e-53
PRK00654 466 PRK00654, glgA, glycogen synthase; Provisional 1e-37
COG0297 487 COG0297, GlgA, Glycogen synthase [Carbohydrate tra 2e-29
PLN02316 1036 PLN02316, PLN02316, synthase/transferase 2e-10
PRK14099 485 PRK14099, PRK14099, glycogen synthase; Provisional 7e-10
PLN02939 977 PLN02939, PLN02939, transferase, transferring glyc 2e-08
PRK14098 489 PRK14098, PRK14098, glycogen synthase; Provisional 8e-05
>gnl|CDD|233724 TIGR02095, glgA, glycogen/starch synthase, ADP-glucose type Back     alignment and domain information 
 Score =  200 bits (510), Expect = 1e-58
 Identities = 67/178 (37%), Positives = 91/178 (51%), Gaps = 15/178 (8%)

Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQ----DTGIR 333
           M V+ VAAE  P++KTGGL DV GALPKALA  GH V V+ P YG   +           
Sbjct: 1   MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVEL 60

Query: 334 KRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIE 393
               V  + + V  F+  ++GV   F+D+P        IYG    D  +R   F +AA E
Sbjct: 61  VDLSVGPRTLYVKVFEGVVEGVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAE 120

Query: 394 IPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQ 451
           +       G+ +     V  A+DWHTAL+P  LKA YR N      +++  IHN+A+Q
Sbjct: 121 LLS-----GLGWQPD--VVHAHDWHTALVPALLKAVYRPN----PIKTVFTIHNLAYQ 167

This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 473
>gnl|CDD|99965 cd03791, GT1_Glycogen_synthase_DULL1_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>gnl|CDD|219794 pfam08323, Glyco_transf_5, Starch synthase catalytic domain Back     alignment and domain information
>gnl|CDD|234809 PRK00654, glgA, glycogen synthase; Provisional Back     alignment and domain information
>gnl|CDD|223374 COG0297, GlgA, Glycogen synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase Back     alignment and domain information
>gnl|CDD|237610 PRK14099, PRK14099, glycogen synthase; Provisional Back     alignment and domain information
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups Back     alignment and domain information
>gnl|CDD|172588 PRK14098, PRK14098, glycogen synthase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 478
PF08323245 Glyco_transf_5: Starch synthase catalytic domain; 100.0
PRK14098 489 glycogen synthase; Provisional 100.0
PLN02939 977 transferase, transferring glycosyl groups 100.0
PRK14099 485 glycogen synthase; Provisional 100.0
TIGR02095 473 glgA glycogen/starch synthases, ADP-glucose type. 100.0
PLN02316 1036 synthase/transferase 100.0
PRK00654 466 glgA glycogen synthase; Provisional 100.0
COG0297 487 GlgA Glycogen synthase [Carbohydrate transport and 100.0
cd03791 476 GT1_Glycogen_synthase_DULL1_like This family is mo 100.0
TIGR02094 601 more_P_ylases alpha-glucan phosphorylases. This fa 99.81
cd04299 778 GT1_Glycogen_Phosphorylase_like This family is mos 99.75
TIGR03449 405 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino 98.96
PF13579160 Glyco_trans_4_4: Glycosyl transferase 4-like domai 98.88
TIGR02472 439 sucr_P_syn_N sucrose-phosphate synthase, putative, 98.87
TIGR02468 1050 sucrsPsyn_pln sucrose phosphate synthase/possible 98.77
PRK10307 412 putative glycosyl transferase; Provisional 98.72
cd03802 335 GT1_AviGT4_like This family is most closely relate 98.68
cd03796 398 GT1_PIG-A_like This family is most closely related 98.65
TIGR02149 388 glgA_Coryne glycogen synthase, Corynebacterium fam 98.6
PLN02871 465 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase 98.59
cd03800 398 GT1_Sucrose_synthase This family is most closely r 98.58
cd04962 371 GT1_like_5 This family is most closely related to 98.54
TIGR02470 784 sucr_synth sucrose synthase. This model represents 98.5
cd03793 590 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, 98.4
cd03794 394 GT1_wbuB_like This family is most closely related 98.36
PF13439177 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 98.29
PF13477139 Glyco_trans_4_2: Glycosyl transferase 4-like 98.26
cd03805 392 GT1_ALG2_like This family is most closely related 98.23
cd04951 360 GT1_WbdM_like This family is most closely related 98.2
cd03801 374 GT1_YqgM_like This family is most closely related 98.17
PRK00726 357 murG undecaprenyldiphospho-muramoylpentapeptide be 98.16
cd03825 365 GT1_wcfI_like This family is most closely related 98.11
cd03823 359 GT1_ExpE7_like This family is most closely related 98.06
cd04955 363 GT1_like_6 This family is most closely related to 98.03
cd03817 374 GT1_UGDG_like This family is most closely related 98.01
PLN00142 815 sucrose synthase 98.0
cd03807 365 GT1_WbnK_like This family is most closely related 97.96
TIGR01133 348 murG undecaprenyldiphospho-muramoylpentapeptide be 97.94
PLN02846 462 digalactosyldiacylglycerol synthase 97.93
cd01635229 Glycosyltransferase_GTB_type Glycosyltransferases 97.8
cd03821 375 GT1_Bme6_like This family is most closely related 97.73
cd03819 355 GT1_WavL_like This family is most closely related 97.72
cd03809 365 GT1_mtfB_like This family is most closely related 97.69
cd03808 359 GT1_cap1E_like This family is most closely related 97.67
cd03822 366 GT1_ecORF704_like This family is most closely rela 97.63
cd03818 396 GT1_ExpC_like This family is most closely related 97.63
cd03785 350 GT1_MurG MurG is an N-acetylglucosaminyltransferas 97.62
cd03814 364 GT1_like_2 This family is most closely related to 97.62
cd03792 372 GT1_Trehalose_phosphorylase Trehalose phosphorylas 97.61
cd03812 358 GT1_CapH_like This family is most closely related 97.61
cd03820 348 GT1_amsD_like This family is most closely related 97.48
cd03795 357 GT1_like_4 This family is most closely related to 97.42
PRK09922 359 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D 97.4
cd03811 353 GT1_WabH_like This family is most closely related 97.34
cd03799 355 GT1_amsK_like This is a family of GT1 glycosyltran 97.34
PF05693 633 Glycogen_syn: Glycogen synthase; InterPro: IPR0086 97.22
PRK15484 380 lipopolysaccharide 1,2-N-acetylglucosaminetransfer 97.2
PRK10125 405 putative glycosyl transferase; Provisional 97.15
cd03798 377 GT1_wlbH_like This family is most closely related 97.07
cd03816 415 GT1_ALG1_like This family is most closely related 96.81
cd05844 367 GT1_like_7 Glycosyltransferases catalyze the trans 96.54
PRK15427 406 colanic acid biosynthesis glycosyltransferase WcaL 96.34
PRK13609 380 diacylglycerol glucosyltransferase; Provisional 95.85
KOG1111 426 consensus N-acetylglucosaminyltransferase complex, 95.69
TIGR03088 374 stp2 sugar transferase, PEP-CTERM/EpsH1 system ass 95.37
PLN02275 371 transferase, transferring glycosyl groups 93.92
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 93.88
PF09314185 DUF1972: Domain of unknown function (DUF1972); Int 92.98
PRK00025 380 lpxB lipid-A-disaccharide synthase; Reviewed 91.37
cd03788 460 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a 89.65
cd03806 419 GT1_ALG11_like This family is most closely related 88.42
PRK13608 391 diacylglycerol glucosyltransferase; Provisional 85.93
TIGR00236 365 wecB UDP-N-acetylglucosamine 2-epimerase. Epimeras 84.97
COG0058 750 GlgP Glucan phosphorylase [Carbohydrate transport 84.11
cd03784 401 GT1_Gtf_like This family includes the Gtfs, a grou 83.91
cd03786 363 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of th 80.65
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2 Back     alignment and domain information 
Probab=100.00  E-value=4.1e-47  Score=367.41  Aligned_cols=179  Identities=34%  Similarity=0.548  Sum_probs=135.4

Q ss_pred             eEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCC-CCcceE--------EEEeCCcceEEEEEE
Q 011755          279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQ-DTGIRK--------RYRVDRQDIEVAYFQ  349 (478)
Q Consensus       279 kIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~-~~~i~~--------~~~v~G~~~~v~V~~  349 (478)
                      ||||||+||+||+||||||||+++||+||+++||+|+||||+|+.+.... ......        .+.+.. ...+.+++
T Consensus         1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~v~~   79 (245)
T PF08323_consen    1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYGFIDEEYFQLEPVRRLSVPFGGPVPVGV-WYEVRVYR   79 (245)
T ss_dssp             EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-THHHHHHCTTEEEEEEES-STTCEEEEE-----EEEEE
T ss_pred             CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccchhhhhhhhcceEEEEecccccccccccc-ceEEEEEE
Confidence            79999999999999999999999999999999999999999998665432 111111        122222 26788999


Q ss_pred             EEECCeeEEEccCccccccCCCcCCC---CcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHH
Q 011755          350 AYIDGVDFVFLDSPLFRHLGNNIYGG---GREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYL  426 (478)
Q Consensus       350 ~~idGV~vyFId~p~fF~r~~~IYg~---~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyL  426 (478)
                      ...+||++|||+++.||+|+ ++|++   +|.|+++||++||+|++++++++       +++|||||||||||||+|+||
T Consensus        80 ~~~~~v~v~~i~~~~~f~r~-~iY~~~~~~~~d~~~rf~~fs~a~le~~~~l-------~~~pDIIH~hDW~tal~p~~l  151 (245)
T PF08323_consen   80 YPVDGVPVYFIDNPEYFDRP-GIYGDNGGDYPDNAERFAFFSRAALELLKKL-------GWKPDIIHCHDWHTALAPLYL  151 (245)
T ss_dssp             EEETTEEEEEEESHHHHGSS-SSSBSTSSBHTTHHHHHHHHHHHHHHHHCTC-------T-S-SEEEEECGGGTTHHHHH
T ss_pred             EEcCCccEEEecChhhcccc-ceeccCCCcchhHHHHHHHHHHHHHHHHHhh-------CCCCCEEEecCchHHHHHHHh
Confidence            99999999999999999875 59986   68999999999999999999874       368999999999999999999


Q ss_pred             HHHhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccc
Q 011755          427 KAYYRDNGLMQYTRSLLVIHNIAHQICQDITWTFSNCMTLLE  468 (478)
Q Consensus       427 K~~y~~~~~f~~iptVfTIHNLayQG~fp~~~~~s~~~~~~~  468 (478)
                      |..++.++.+.++|+||||||++|||+++.+.+  ..+.||.
T Consensus       152 k~~~~~~~~~~~~~~v~TIHN~~yqg~~~~~~~--~~~gl~~  191 (245)
T PF08323_consen  152 KERYQQDPFFANIPTVFTIHNLEYQGIFPPEDL--KALGLPD  191 (245)
T ss_dssp             HHCCSS------SEEEEEESSTT---EEEGGGG--GCTT-GG
T ss_pred             ccccccccccccceeEEEEcccccCCcCCHHHH--HHcCCCH
Confidence            999888888999999999999999999997665  5566664

4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
>PRK14098 glycogen synthase; Provisional Back     alignment and domain information
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information
>PRK14099 glycogen synthase; Provisional Back     alignment and domain information
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type Back     alignment and domain information
>PLN02316 synthase/transferase Back     alignment and domain information
>PRK00654 glgA glycogen synthase; Provisional Back     alignment and domain information
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR02094 more_P_ylases alpha-glucan phosphorylases Back     alignment and domain information
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences Back     alignment and domain information
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase Back     alignment and domain information
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A Back     alignment and domain information
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain Back     alignment and domain information
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant Back     alignment and domain information
>PRK10307 putative glycosyl transferase; Provisional Back     alignment and domain information
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family Back     alignment and domain information
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase Back     alignment and domain information
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR02470 sucr_synth sucrose synthase Back     alignment and domain information
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis Back     alignment and domain information
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A Back     alignment and domain information
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like Back     alignment and domain information
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli Back     alignment and domain information
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known Back     alignment and domain information
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional Back     alignment and domain information
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PLN00142 sucrose synthase Back     alignment and domain information
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase Back     alignment and domain information
>PLN02846 digalactosyldiacylglycerol synthase Back     alignment and domain information
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis Back     alignment and domain information
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose Back     alignment and domain information
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional Back     alignment and domain information
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria Back     alignment and domain information
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3 Back     alignment and domain information
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional Back     alignment and domain information
>PRK10125 putative glycosyl transferase; Provisional Back     alignment and domain information
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional Back     alignment and domain information
>PRK13609 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism] Back     alignment and domain information
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated Back     alignment and domain information
>PLN02275 transferase, transferring glycosyl groups Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases Back     alignment and domain information
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed Back     alignment and domain information
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor Back     alignment and domain information
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK13608 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase Back     alignment and domain information
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin Back     alignment and domain information
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
3vue_A 536 Crystal Structure Of Rice Granule Bound Starch Synt 3e-27
1rzu_A 485 Crystal Structure Of The Glycogen Synthase From A. 5e-10
1rzv_A 485 Crystal Structure Of The Glycogen Synthase From Agr 3e-08
3d1j_A 477 Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408 1e-07
2qzs_A 485 Crystal Structure Of Wild-Type E.Coli Gs In Complex 2e-07
3cop_A 485 Crystal Structure Of E.Coli Gs Mutant E377a In Comp 2e-07
2bis_A 440 Structure Of Glycogen Synthase From Pyrococcus Abys 7e-05
3l01_A 428 Crystal Structure Of Monomeric Glycogen Synthase Fr 8e-05
3fro_A 439 Crystal Structure Of Pyrococcus Abyssi Glycogen Syn 8e-05
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain Length = 536 Back     alignment and structure 
Iteration: 1

 Score =  119 bits (299), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/188 (42%), Positives = 103/188 (54%), Gaps = 15/188 (7%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
           MNV+ V AE  PWSKTGGLGDV G LP A+A  GHRVMV++P Y  Y +  DT +    +
Sbjct: 10  MNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIK 69
Query: 338 VDRQDIEVAYFQAYIDGVDFVFLDSPLFRH-----LGNNIYGGGR----EDILKRMVLFC 388
           V  +   V +F  Y  GVD VF+D P F        G  IYG       +D   R  L C
Sbjct: 70  VADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLC 129
Query: 389 KAAIEIPWYV-----PCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLL 443
           +AA+E P  +     P     YG+ ++VF+ NDWHT  L  YLK  Y+ NG+ +  +   
Sbjct: 130 QAALEAPRILNLNNNPYFKGTYGE-DVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAF 188
Query: 444 VIHNIAHQ 451
            IHNI++Q
Sbjct: 189 CIHNISYQ 196
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp Length = 485 Back     alignment and structure
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) Length = 485 Back     alignment and structure
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s) Length = 477 Back     alignment and structure
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) Length = 485 Back     alignment and structure
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex With Adp And Acceptor Analogue Heppso Length = 485 Back     alignment and structure
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi Length = 440 Back     alignment and structure
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From Pyrococcus Abyssi Length = 428 Back     alignment and structure
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase With Open And Closed Conformations Length = 439 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
1rzu_A 485 Glycogen synthase 1; glycosyl-transferase, GT-B fo 4e-63
2qzs_A 485 Glycogen synthase; glycosyl-transferase, GT-B fold 1e-62
3fro_A 439 GLGA glycogen synthase; glycosyltransferase family 5e-57
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A Length = 485 Back     alignment and structure
 Score =  211 bits (540), Expect = 4e-63
 Identities = 55/178 (30%), Positives = 73/178 (41%), Gaps = 14/178 (7%)

Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
           MNV+ V++E  P  KTGGL DV GALP AL   G R   + P Y          ++    
Sbjct: 1   MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEF 60

Query: 338 VDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIY----GGGREDILKRMVLFCKAAIE 393
            D    +    +   + +D + LD+P +       Y    G    D  KR      AA  
Sbjct: 61  TDLLGEKADLLEVQHERLDLLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAAR 120

Query: 394 IPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQ 451
           I       GV  G    +  A+DW  A+ PVY++             SLL IHNIA Q
Sbjct: 121 IGA-----GVLPGWRPDMVHAHDWQAAMTPVYMRYAETPE-----IPSLLTIHNIAFQ 168
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A Length = 485 Back     alignment and structure
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} PDB: 2bis_A* 3l01_A* Length = 439 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query478
3vue_A 536 GBSS-I, granule-bound starch synthase 1, chloropla 100.0
3fro_A 439 GLGA glycogen synthase; glycosyltransferase family 99.76
1rzu_A 485 Glycogen synthase 1; glycosyl-transferase, GT-B fo 99.73
2qzs_A 485 Glycogen synthase; glycosyl-transferase, GT-B fold 99.71
3nb0_A 725 Glycogen [starch] synthase isoform 2; glycogen syn 99.41
3c48_A 438 Predicted glycosyltransferases; retaining glycosyl 99.35
2c4m_A 796 Glycogen phosphorylase; allosteric control, phosph 99.03
2r60_A 499 Glycosyl transferase, group 1; rossmann-fold; 1.80 99.02
1l5w_A 796 Maltodextrin phosphorylase; enzymatic catalysis, s 99.0
3s28_A 816 Sucrose synthase 1; glycosyltransferase, sucrose m 98.5
2gek_A 406 Phosphatidylinositol mannosyltransferase (PIMA); G 98.45
2gj4_A 824 Glycogen phosphorylase, muscle form; transferase; 98.45
2iuy_A 342 Avigt4, glycosyltransferase; antibiotics, family G 98.42
2iw1_A 374 Lipopolysaccharide core biosynthesis protein RFAG; 98.36
3okp_A 394 GDP-mannose-dependent alpha-(1-6)-phosphatidylino 98.24
2jjm_A 394 Glycosyl transferase, group 1 family protein; anth 98.2
1f0k_A 364 MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe 98.12
2x6q_A 416 Trehalose-synthase TRET; biosynthetic protein; 2.2 98.0
2hy7_A 406 Glucuronosyltransferase GUMK; glycosyltransferases 97.27
3oy2_A 413 Glycosyltransferase B736L; rossmann fold, GDP-mann 97.14
3otg_A 412 CALG1; calicheamicin, TDP, structural genomics, PS 96.94
3ia7_A 402 CALG4; glycosysltransferase, calicheamicin, enediy 96.69
3oti_A 398 CALG3; calicheamicin, TDP, structural genomics, PS 96.37
3rsc_A 415 CALG2; TDP, enediyne, structural genomics, PSI-2, 96.34
4fzr_A 398 SSFS6; structural genomics, PSI-biology, protein s 96.3
3tsa_A 391 SPNG, NDP-rhamnosyltransferase; glycosyltransferas 96.1
1uqt_A 482 Alpha, alpha-trehalose-phosphate synthase; glycosy 95.84
1vgv_A 384 UDP-N-acetylglucosamine 2-epimerase; structural ge 95.7
2x0d_A 413 WSAF; GT4 family, transferase; HET: MSE; 2.28A {Ge 95.7
3h4t_A 404 Glycosyltransferase GTFA, glycosyltransferase; van 95.56
2iyf_A 430 OLED, oleandomycin glycosyltransferase; antibiotic 95.09
1v4v_A 376 UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, t 94.6
3beo_A 375 UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, a 94.56
4amg_A 400 Snogd; transferase, polyketide biosynthesis, GT1 f 92.69
3s2u_A 365 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape 90.9
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 85.54
2p6p_A 384 Glycosyl transferase; X-RAY-diffraction,urdamycina 84.32
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A* Back     alignment and structure
Probab=100.00  E-value=6.1e-43  Score=368.26  Aligned_cols=185  Identities=41%  Similarity=0.687  Sum_probs=150.8

Q ss_pred             CCCceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCcceEEEEeCCcceEEEEEEEEECC
Q 011755          275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDG  354 (478)
Q Consensus       275 ~~~MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~~i~~~~~v~G~~~~v~V~~~~idG  354 (478)
                      +..||||||||||+||+||||||||+++||+||+++||+|+||||.|+.+....+......+.+++....+.+++...+|
T Consensus         7 ~~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   86 (536)
T 3vue_A            7 HHHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRG   86 (536)
T ss_dssp             -CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTTCEEEEEEEEEEETTEEEEEEEEECEETT
T ss_pred             CCCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCchhhhhhcccceEEEEEecCceEEEEEEEEEECC
Confidence            45699999999999999999999999999999999999999999999987654333334455677777888999999999


Q ss_pred             eeEEEccCccccccC-----CCcCCC----CcccHHHHHHHHHHHHHHhcccCCCCCccC----CCCCcEEEECCchhhH
Q 011755          355 VDFVFLDSPLFRHLG-----NNIYGG----GREDILKRMVLFCKAAIEIPWYVPCGGVCY----GDGNLVFIANDWHTAL  421 (478)
Q Consensus       355 V~vyFId~p~fF~r~-----~~IYg~----~~~Dn~~RFafFskAaLEll~~~~~g~~~~----g~~PDIIHaHDWhTAL  421 (478)
                      |++|||++|.||+|.     ..+|++    +|.||.+||++||+|++++++.+..++.++    .+.+||+|||||||||
T Consensus        87 v~~y~id~~~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~~ddIiH~hDW~t~l  166 (536)
T 3vue_A           87 VDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGP  166 (536)
T ss_dssp             EEEEEEECTTTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCCSCEEEEEESGGGST
T ss_pred             ceEEEecChhhhccccccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhccCCCCEEEEECcchHHH
Confidence            999999999999863     457874    479999999999999999876443222111    1357899999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCcEEEEEcCCCCccccccccc
Q 011755          422 LPVYLKAYYRDNGLMQYTRSLLVIHNIAHQICQDITWT  459 (478)
Q Consensus       422 aPvyLK~~y~~~~~f~~iptVfTIHNLayQG~fp~~~~  459 (478)
                      +|+++|..+...+.+.++|+||||||++|||+|+...+
T Consensus       167 ~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~  204 (536)
T 3vue_A          167 LASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDY  204 (536)
T ss_dssp             HHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGG
T ss_pred             HHHHHHHhhhhhhhhcccceeeeecCcccccccchhhh
Confidence            99999999988888899999999999999999987764
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A* Back     alignment and structure
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A Back     alignment and structure
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A Back     alignment and structure
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A* Back     alignment and structure
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* Back     alignment and structure
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae} Back     alignment and structure
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* Back     alignment and structure
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A* Back     alignment and structure
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A* Back     alignment and structure
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* Back     alignment and structure
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ... Back     alignment and structure
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* Back     alignment and structure
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* Back     alignment and structure
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* Back     alignment and structure
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* Back     alignment and structure
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* Back     alignment and structure
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* Back     alignment and structure
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A* Back     alignment and structure
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Back     alignment and structure
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* Back     alignment and structure
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* Back     alignment and structure
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Back     alignment and structure
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* Back     alignment and structure
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A* Back     alignment and structure
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A* Back     alignment and structure
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* Back     alignment and structure
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A* Back     alignment and structure
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3 Back     alignment and structure
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A Back     alignment and structure
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A* Back     alignment and structure
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 478
d1rzua_ 477 c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacte 7e-43
d2bisa1 437 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyro 1e-26
d1o5ia_234 c.2.1.2 (A:) beta-keto acyl carrier protein reduct 0.001
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Length = 477 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

 Score =  155 bits (393), Expect = 7e-43
 Identities = 53/185 (28%), Positives = 71/185 (38%), Gaps = 14/185 (7%)

Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
           MNV+ V++E  P  KTGGL DV GALP AL   G R   + P Y          ++    
Sbjct: 1   MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEF 60

Query: 338 VDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIY----GGGREDILKRMVLFCKAAIE 393
            D    +    +   + +D + LD+P +       Y    G    D  KR      A   
Sbjct: 61  TDLLGEKADLLEVQHERLDLLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLA--- 117

Query: 394 IPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQIC 453
                   GV  G    +  A+DW  A+ PVY++             SLL IHNIA Q  
Sbjct: 118 --AARIGAGVLPGWRPDMVHAHDWQAAMTPVYMRYAET-----PEIPSLLTIHNIAFQGQ 170

Query: 454 QDITW 458
                
Sbjct: 171 FGANI 175
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Length = 437 Back     information, alignment and structure
>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query478
d1rzua_ 477 Glycogen synthase 1, GlgA {Agrobacterium tumefacie 99.97
d2bisa1 437 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 99.88
d2iw1a1 370 Lipopolysaccharide core biosynthesis protein RfaG 97.88
d1rrva_ 401 TDP-vancosaminyltransferase GftD {Amycolatopsis or 94.91
d1l5wa_ 796 Maltodextrin phosphorylase (MALP) {Escherichia col 93.82
d1uqta_ 456 Trehalose-6-phosphate synthase, OtsA {Escherichia 93.69
d1iira_ 401 UDP-glucosyltransferase GtfB {Amycolatopsis orient 87.43
d1jaya_212 Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae 85.45
d1pn3a_ 391 TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi 84.56
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.97  E-value=7.9e-32  Score=270.54  Aligned_cols=170  Identities=32%  Similarity=0.400  Sum_probs=138.5

Q ss_pred             ceEEEEecccCCccccCcHHHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCcceEEEEe-CCcceEEEEEEEEECCee
Q 011755          278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRV-DRQDIEVAYFQAYIDGVD  356 (478)
Q Consensus       278 MkIL~VSsE~aPfaKtGGLGDVVgsLPkALa~~GheV~VItP~Yg~i~~~~~~~i~~~~~v-~G~~~~v~V~~~~idGV~  356 (478)
                      |||||||+|++||+|+||||+||++|+++|+++||+|+||+|.|+.+.......++ .+.. ......+.+++...+|++
T Consensus         1 M~i~~v~~e~~P~~~~GGl~~vv~~La~~L~~~Gh~V~Vi~P~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~   79 (477)
T d1rzua_           1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVK-CFEFTDLLGEKADLLEVQHERLD   79 (477)
T ss_dssp             CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHHCCSCEE-EEEESCSSSCCEEEEEEEETTEE
T ss_pred             CEEEEEEEeeecccccCcHHHHHHHHHHHHHHcCCeEEEEecCCcchhhhcccceE-EEEEeccCCceEEEEEEEECCee
Confidence            99999999999999999999999999999999999999999999866432222222 1111 222234677788889999


Q ss_pred             EEEccCccccccCCCcCCC----CcccHHHHHHHHHHHHHHhcccCCCCCccCCCCCcEEEECCchhhHHHHHHHHHhhc
Q 011755          357 FVFLDSPLFRHLGNNIYGG----GREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRD  432 (478)
Q Consensus       357 vyFId~p~fF~r~~~IYg~----~~~Dn~~RFafFskAaLEll~~~~~g~~~~g~~PDIIHaHDWhTALaPvyLK~~y~~  432 (478)
                      +|||++|.||+|.+.+|.+    .|.|+..+|..|+++++++++....     +++|||||+||||+++++.+++...  
T Consensus        80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~pDIvH~h~~~~~l~~~~~~~~~--  152 (477)
T d1rzua_          80 LLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLP-----GWRPDMVHAHDWQAAMTPVYMRYAE--  152 (477)
T ss_dssp             EEEEECHHHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSS-----SCCCSEEEEEHHHHTTHHHHHHHSS--
T ss_pred             EEEecChhhcccCCCcccCcccccccccHHHHHHHHHHHHhhhhhccc-----CCCCCEEEecchhHHHHHHHHHHhh--
Confidence            9999999999887777753    4688999999999999998875421     4689999999999999999998643  


Q ss_pred             CCCCCCCcEEEEEcCCCCcccccccc
Q 011755          433 NGLMQYTRSLLVIHNIAHQICQDITW  458 (478)
Q Consensus       433 ~~~f~~iptVfTIHNLayQG~fp~~~  458 (478)
                         ..++|+|+|+||+.+++.++.+.
T Consensus       153 ---~~~ip~V~t~H~~~~~~~~~~~~  175 (477)
T d1rzua_         153 ---TPEIPSLLTIHNIAFQGQFGANI  175 (477)
T ss_dssp             ---SCCCCEEEEESCTTCCCEECGGG
T ss_pred             ---CCCCCEEEEEecccccccCCHHH
Confidence               24689999999999999887655
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure