Citrus Sinensis ID: 011766
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 478 | 2.2.26 [Sep-21-2011] | |||||||
| A5UMN6 | 435 | 5-methylthioadenosine/S-a | yes | no | 0.870 | 0.956 | 0.363 | 3e-74 | |
| Q466Q9 | 432 | 5-methylthioadenosine/S-a | yes | no | 0.864 | 0.956 | 0.348 | 9e-65 | |
| A5D1G6 | 433 | 5-methylthioadenosine/S-a | yes | no | 0.853 | 0.942 | 0.352 | 6e-64 | |
| Q8PUQ3 | 432 | 5-methylthioadenosine/S-a | yes | no | 0.872 | 0.965 | 0.341 | 6e-64 | |
| B0K2W0 | 431 | 5-methylthioadenosine/S-a | yes | no | 0.847 | 0.939 | 0.335 | 7e-64 | |
| B0K8R8 | 431 | 5-methylthioadenosine/S-a | yes | no | 0.847 | 0.939 | 0.335 | 7e-64 | |
| Q8TRA4 | 432 | 5-methylthioadenosine/S-a | yes | no | 0.859 | 0.951 | 0.338 | 3e-63 | |
| Q0AYV2 | 431 | 5-methylthioadenosine/S-a | yes | no | 0.847 | 0.939 | 0.340 | 9e-63 | |
| Q2NHL6 | 425 | 5-methylthioadenosine/S-a | yes | no | 0.849 | 0.955 | 0.305 | 5e-56 | |
| Q2RJW1 | 428 | 5-methylthioadenosine/S-a | no | no | 0.820 | 0.915 | 0.337 | 5e-56 |
| >sp|A5UMN6|MTAD_METS3 5-methylthioadenosine/S-adenosylhomocysteine deaminase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=mtaD PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 279 bits (714), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 166/457 (36%), Positives = 264/457 (57%), Gaps = 41/457 (8%)
Query: 17 SSSTMILHNAVIVT-MD-KESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQ 74
+ +T+++ +A+I+ +D KE + G + + D+I IG D D++ID +
Sbjct: 2 TDNTILIKDALILNPLDFKEIK----GSLLIKNDKIAEIGTDID-----ESNVDKVIDAK 52
Query: 75 SQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIEL 134
+ILLPGFVNTH H S L +G+ADD+ L +WL+D IWP E+N+T E YI LL IEL
Sbjct: 53 GKILLPGFVNTHTHLSMTLFRGLADDLSLDSWLNDNIWPMEANLTSEYCYIGALLGAIEL 112
Query: 135 IHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDS 194
I SG T F++ ++ ++AKAVE G+RA L +D G D + +
Sbjct: 113 IKSGTTTFSDM-YFYMEDVAKAVEESGIRAVLSYGMIDFG-------------DDEKREH 158
Query: 195 SISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMH 254
I N L+ K + ADGRI+++FG A+ LL + R +A E+ TGIH+H
Sbjct: 159 EIKENIA------LFEKCNGMADGRIKVFFGPHSPYTASKDLLEDVRWLANEYNTGIHIH 212
Query: 255 VAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 314
V+E E ++ D +LD I FL ++++AH+VW++H EI ++ R VK+SH
Sbjct: 213 VSETQKEINDSLEAH--DLRPFEYLDSIGFLGPDVVAAHSVWLSHNEIEIIKRNNVKISH 270
Query: 315 CPASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANG 373
P S M++ G API++++ DICV +GTDGA SNN + +++E+ ASL+ K +
Sbjct: 271 NPCSNMKLASGIAPIQDLITNDICVGIGTDGASSNNNLDLIEELRTASLLQKVNLL---- 326
Query: 374 TTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITS 433
+P AL + L M TI GA+ + + +IGS+E GKKAD++++D + MVP +S
Sbjct: 327 --NPKALTSNEALAMGTIKGAEVLGLEQEIGSIEVGKKADLILIDTNNANMVPDSSATSS 384
Query: 434 -LVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQ 469
++Y NV + +C+G+ +M+N+K+ L +++
Sbjct: 385 NIIYSANGYNVDTTICDGKILMENRKLTTLDEEEIYK 421
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Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L-homocysteine, respectively. Is also able to deaminate adenosine. Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) (taxid: 420247) EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: 3EC: 1 |
| >sp|Q466Q9|MTAD_METBF 5-methylthioadenosine/S-adenosylhomocysteine deaminase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=mtaD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (632), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 157/450 (34%), Positives = 241/450 (53%), Gaps = 37/450 (8%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ NA ++TMD + +NG V + +I IG+ + S+ AD +ID + +++P
Sbjct: 4 IIVKNAYVMTMDPDEGDLKNGTVVIEDGKITEIGE------KTSESADTVIDAKHSVVMP 57
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
G VNTH H + L +G ADD+ L WL IWP E+ +T ED Y +LL +E+I SG T
Sbjct: 58 GLVNTHTHAAMTLFRGYADDLQLADWLEGHIWPAEAKLTAEDVYKGSLLACLEMIRSGTT 117
Query: 141 CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNF 200
FA+ ++ E AKAVE GLRA L GL W ++ D F
Sbjct: 118 SFADM-YFYMDETAKAVEASGLRASLCH-------GLIELW----NEEKGATDLKEGKRF 165
Query: 201 VSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 260
V + Q AADGRI+ +G ++ L + R+ A GIH+H+ E
Sbjct: 166 VRAWQG--------AADGRIKTMYGPHAPNTCSEEFLAKVREEANRDGAGIHIHLLET-- 215
Query: 261 ENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAM 320
E +++ + +V L+ I FL ++L+AH VW++ +I +L + GV VSH S M
Sbjct: 216 EAELLAMKERYGKCSVHLLEDIGFLGPDVLAAHCVWLSDGDIEILGKRGVNVSHNVISNM 275
Query: 321 RML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAA 379
++ G AP+ +ML + VSLGTDG SNN + + +EM A+L++K T P A
Sbjct: 276 KLASGIAPVYKMLEKGVNVSLGTDGCASNNNLDLFEEMKTAALLHK------VNTFSPTA 329
Query: 380 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMR 439
LPA VL+M T+NGAK++ + G L+ G KAD++VVD + P D + LVY +
Sbjct: 330 LPARQVLQMGTVNGAKAL--GTETGMLKVGMKADLIVVDMKKAHLTPCFDVPSHLVYSAK 387
Query: 440 TENVVSVMCNGQWVMKNKKILLLMRGRLFQ 469
+V + + NG+ +M + K+L L ++ +
Sbjct: 388 GSDVRTTIVNGKVLMDDYKVLALDEQKVME 417
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Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L-homocysteine, respectively. Is also able to deaminate adenosine. Methanosarcina barkeri (strain Fusaro / DSM 804) (taxid: 269797) EC: 3 EC: . EC: 5 EC: . EC: 4 EC: . EC: 3 EC: 1 |
| >sp|A5D1G6|MTAD_PELTS 5-methylthioadenosine/S-adenosylhomocysteine deaminase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=mtaD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 245 bits (625), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 158/448 (35%), Positives = 241/448 (53%), Gaps = 40/448 (8%)
Query: 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQIL 78
+ +++ A ++TM+ V+R+G + + + I ++G + + F + ID +
Sbjct: 2 ANILIQGATVLTMEGPDGVYRDGEIAIAGNSILSVGPRGSVPEGFRP--GRSIDGTGMVA 59
Query: 79 LPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSG 138
+PGFVN H H + L + ADD+ LM WL ++IWP E + ED Y T+LC +E+I SG
Sbjct: 60 MPGFVNCHTHAAMTLLRSYADDMPLMKWLSEKIWPVEERLQPEDIYWGTMLCCLEMIKSG 119
Query: 139 VTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISF 198
T FA+ + +A AVE G+RACL + + G G A A+ D S+SF
Sbjct: 120 TTTFADMYFS-MERVAAAVEESGMRACLSRGMIGVGSG--ARKAI---------DESLSF 167
Query: 199 NFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEI 258
+ + ADGRI FG L + D+A GIH+HVAE
Sbjct: 168 ----------VREWNGGADGRITAMFGPHAPYTCPPEYLKKVVDLAAREGAGIHIHVAET 217
Query: 259 PYENQVVMDTRKVDHGT--VTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCP 316
E + + + +GT V +LD + +L+AH V ++ +I +LS V ++HCP
Sbjct: 218 RDEIEQI----RAGYGTTPVRYLDAAGVFELPVLAAHCVHLDEGDIEILSAKRVGIAHCP 273
Query: 317 ASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTT 375
S M++ G AP+ E+L A V LGTDGA SNN + +++EM ASL++K T
Sbjct: 274 ESNMKLASGIAPVTELLQAGAAVGLGTDGAASNNNLDMLEEMRSASLLHK------VSTG 327
Query: 376 DPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWP-MVPVHDRITSL 434
DP ALP+ LRMAT GA + L D+G L+ G KAD+++VD F P + P HD I L
Sbjct: 328 DPLALPSFEALRMATAGGALA-LGLKDVGLLKPGMKADLILVD-FRRPHLCPQHDLIAHL 385
Query: 435 VYCMRTENVVSVMCNGQWVMKNKKILLL 462
VY ++ +V +V+ NG+ VM+ +++L L
Sbjct: 386 VYAAQSADVDTVIINGKVVMEKRQVLNL 413
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Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L-homocysteine, respectively. Is also able to deaminate adenosine. Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) (taxid: 370438) EC: 3 EC: . EC: 5 EC: . EC: 4 EC: . EC: 3 EC: 1 |
| >sp|Q8PUQ3|MTAD_METMA 5-methylthioadenosine/S-adenosylhomocysteine deaminase OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=mtaD PE=3 SV=2 | Back alignment and function description |
|---|
Score = 245 bits (625), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 155/454 (34%), Positives = 243/454 (53%), Gaps = 37/454 (8%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ NA ++TMD ++ + G V + +I IG + + AD +ID + +++P
Sbjct: 4 IIIKNAYVLTMDPDAGDIKKGTVVIEDGKITEIGV------KTKESADTVIDAKGSVVMP 57
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
G VNTH H + L +G ADD+ L WL IWP E+ +T ED Y +LL +E+I SG T
Sbjct: 58 GLVNTHTHAAMTLFRGYADDLQLAEWLEKHIWPAEAQLTAEDVYRGSLLACLEMIRSGTT 117
Query: 141 CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNF 200
FA+ + E AKAVE GLRA L GL W ++ + D F
Sbjct: 118 SFADM-YFFMDETAKAVEASGLRASL-------SHGLIELW----NEEKGENDLKEGKRF 165
Query: 201 VSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 260
V + Q AA GRI+ +G +D L + ++ AR+ G+H+HV E
Sbjct: 166 VRAWQG--------AAKGRIKTMYGPHAPNTCSDEFLAKVKEAARQDGAGLHIHVLET-- 215
Query: 261 ENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAM 320
E +++ + +V LD I F ++L+AH VW++ +I +L GV VSH P S M
Sbjct: 216 EAELLAMKERYGKCSVHMLDDIGFFGPDVLAAHCVWLSDGDIEVLREKGVNVSHNPISNM 275
Query: 321 RML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAA 379
++ G AP+ +ML + VSLGTDG SNN + + +EM A+L++K T +P A
Sbjct: 276 KLASGTAPVYKMLERGVNVSLGTDGCASNNNLDLFEEMKTAALLHK------LSTCNPTA 329
Query: 380 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMR 439
LPA VL+MAT+NGAK++ + G L+ G KADM++VD + P D + LVY
Sbjct: 330 LPARQVLQMATVNGAKAL--GTETGMLKTGMKADMIIVDMKKPHLTPCFDVPSHLVYSAG 387
Query: 440 TENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDK 473
+V + + +G+ +M++ ++++L ++ + K
Sbjct: 388 GSDVRTTIVDGKILMQDYRVMVLDEQKVIEEAQK 421
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Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L-homocysteine, respectively. Is also able to deaminate adenosine. Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (taxid: 192952) EC: 3 EC: . EC: 5 EC: . EC: 4 EC: . EC: 3 EC: 1 |
| >sp|B0K2W0|MTAD_THEPX 5-methylthioadenosine/S-adenosylhomocysteine deaminase OS=Thermoanaerobacter sp. (strain X514) GN=mtaD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (624), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 148/441 (33%), Positives = 236/441 (53%), Gaps = 36/441 (8%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQ-SADILQQFSQMADQIIDLQSQILL 79
+++ N +++M +E + N +++ D I IG+ + DI D++ID +I
Sbjct: 3 LLIKNVALLSMKEEQPLMENTNIYIEGDTITYIGEINPDI------KVDRVIDGTKKIAT 56
Query: 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGV 139
PG +N H H L + ADDV L WL IWP ES ++ ED Y +LL IE+I+SG
Sbjct: 57 PGLINAHTHLGMSLLRNYADDVPLFDWLSKHIWPVESKLSAEDVYWGSLLSMIEMIYSGT 116
Query: 140 TCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFN 199
T F + + E+AKA E +G+R L + ++ + D+ I+
Sbjct: 117 TTFCDMYF-FMDEVAKATEEVGIRGVLTRGIIE------------------ESDAEINKE 157
Query: 200 FVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP 259
+ ++K LY H+ ADGRI++ G + L E ++A+E TGIH+HV+E
Sbjct: 158 KLRDTRK-LYNTWHNKADGRIKVMVGPHAPYTCSSSYLKEVVELAKELNTGIHIHVSET- 215
Query: 260 YENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASA 319
+ +V +K V L I ++AH V V+ + +L V + P S
Sbjct: 216 -KKEVEESFQKHGKSPVKHLKDIGVFDVPTVAAHCVHVSDEDTEILKEMKVSPVYNPTSN 274
Query: 320 MRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPA 378
++ GFAP+ +ML I V+LGTDG SNN +++ +E++ A+ INK D
Sbjct: 275 AKLASGFAPVDQMLKKGINVALGTDGPASNNNLNMFEEIHFAATINKAL------NYDAL 328
Query: 379 ALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCM 438
A+PA L+MATINGAK++LWD +IGS+E GKKAD+V++D P H+ I++L Y
Sbjct: 329 AVPALEALKMATINGAKALLWDKEIGSIEVGKKADIVIIDIDKPHFYPHHNLISALAYTA 388
Query: 439 RTENVVSVMCNGQWVMKNKKI 459
+ +V +V+ NG+ +M+N++I
Sbjct: 389 QASDVDTVIINGKIIMENREI 409
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Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L-homocysteine, respectively. Is also able to deaminate adenosine. Thermoanaerobacter sp. (strain X514) (taxid: 399726) EC: 3 EC: . EC: 5 EC: . EC: 4 EC: . EC: 3 EC: 1 |
| >sp|B0K8R8|MTAD_THEP3 5-methylthioadenosine/S-adenosylhomocysteine deaminase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=mtaD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (624), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 148/441 (33%), Positives = 236/441 (53%), Gaps = 36/441 (8%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQ-SADILQQFSQMADQIIDLQSQILL 79
+++ N +++M +E + N +++ D I IG+ + DI D++ID +I
Sbjct: 3 LLIKNVALLSMKEEQPLMENTNIYIEGDTITYIGEINPDI------KVDRVIDGTKKIAT 56
Query: 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGV 139
PG +N H H L + ADDV L WL IWP ES ++ ED Y +LL IE+I+SG
Sbjct: 57 PGLINAHTHLGMSLLRNYADDVPLFDWLSKHIWPVESKLSAEDVYWGSLLSMIEMIYSGT 116
Query: 140 TCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFN 199
T F + + E+AKA E +G+R L + ++ + D+ I+
Sbjct: 117 TTFCDMYF-FMDEVAKATEEVGIRGVLTRGIIE------------------ESDAEINKE 157
Query: 200 FVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP 259
+ ++K LY H+ ADGRI++ G + L E ++A+E TGIH+HV+E
Sbjct: 158 KLRDTRK-LYNTWHNKADGRIKVMVGPHAPYTCSSSYLKEVVELAKELNTGIHIHVSET- 215
Query: 260 YENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASA 319
+ +V +K V L I ++AH V V+ + +L V + P S
Sbjct: 216 -KKEVEESFQKHGKSPVKHLKDIGVFDVPTVAAHCVHVSDEDTEILKEMKVSPVYNPTSN 274
Query: 320 MRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPA 378
++ GFAP+ +ML I V+LGTDG SNN +++ +E++ A+ INK D
Sbjct: 275 AKLASGFAPVDQMLKKGINVALGTDGPASNNNLNMFEEIHFAATINKAL------NYDAL 328
Query: 379 ALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCM 438
A+PA L+MATINGAK++LWD +IGS+E GKKAD+V++D P H+ I++L Y
Sbjct: 329 AVPALEALKMATINGAKALLWDKEIGSIEVGKKADIVIIDIDKPHFYPHHNLISALAYTA 388
Query: 439 RTENVVSVMCNGQWVMKNKKI 459
+ +V +V+ NG+ +M+N++I
Sbjct: 389 QASDVDTVIINGKIIMENREI 409
|
Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L-homocysteine, respectively. Is also able to deaminate adenosine. Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) (taxid: 340099) EC: 3 EC: . EC: 5 EC: . EC: 4 EC: . EC: 3 EC: 1 |
| >sp|Q8TRA4|MTAD_METAC 5-methylthioadenosine/S-adenosylhomocysteine deaminase OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=mtaD PE=3 SV=2 | Back alignment and function description |
|---|
Score = 243 bits (619), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 153/452 (33%), Positives = 243/452 (53%), Gaps = 41/452 (9%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ NA ++TMD ++ +NG V + +I IG++ + AD +ID + +++P
Sbjct: 4 IIIKNAYVLTMDPDAGDLKNGTVVIEDGKITEIGENT------KENADTVIDAKGSVVMP 57
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
G NTH H + L +G ADD+ L WL IWP E+ + ED Y +LL +E+I SG T
Sbjct: 58 GLANTHTHAAMTLFRGYADDLQLAEWLEKHIWPAEAQLKAEDVYKGSLLACLEMIKSGTT 117
Query: 141 CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNF 200
FA+ ++ E AKAVE GLRA L GL W ++ + D F
Sbjct: 118 SFADM-YFYMDETAKAVEASGLRASLSH-------GLIELW----NEEKGEADLKEGKRF 165
Query: 201 VSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 260
V + Q AADGRI+ +G ++ L + ++ A G+H+HV E
Sbjct: 166 VRAWQG--------AADGRIKTMYGPHAPNTCSEEFLTKVKEEAHRDGAGLHIHVLETEA 217
Query: 261 ENQVVMDTRKVDHG--TVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPAS 318
E ++ K +G +V L+ I F ++L+AH VW++ +I +L + V VSH P S
Sbjct: 218 E----LNAMKERYGKCSVHLLEDIGFFGPDVLAAHCVWLSDGDIEILRQREVNVSHNPIS 273
Query: 319 AMRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDP 377
M++ G AP+ +ML + V+LGTDG SNN + + +E+ A+L++K T +P
Sbjct: 274 NMKLASGIAPVYKMLEKGVNVTLGTDGCASNNNLDLFEEIKTAALLHK------VSTGNP 327
Query: 378 AALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYC 437
ALPA VL MAT+NGAK++ + G L+ GKKADM+VVD + P D + LVY
Sbjct: 328 TALPARQVLEMATVNGAKAL--GTETGMLKVGKKADMIVVDMKKPHLTPCFDVPSHLVYS 385
Query: 438 MRTENVVSVMCNGQWVMKNKKILLLMRGRLFQ 469
+ +V + + +G+ +M N ++L++ ++ +
Sbjct: 386 AKGCDVRTTIVDGKVLMDNYRVLVMDEEKVIE 417
|
Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L-homocysteine, respectively. Is also able to deaminate adenosine. Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) (taxid: 188937) EC: 3 EC: . EC: 5 EC: . EC: 4 EC: . EC: 3 EC: 1 |
| >sp|Q0AYV2|MTAD_SYNWW 5-methylthioadenosine/S-adenosylhomocysteine deaminase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=mtaD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 241 bits (615), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 150/441 (34%), Positives = 232/441 (52%), Gaps = 36/441 (8%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
++L N I+ + + G + + IK +G +F D IID ++Q+LLP
Sbjct: 3 ILLDNISIIPVSGSNSFIEKGYLLIEDVFIKELGTGKAPEGEF----DHIIDGENQVLLP 58
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
GF+N H H + L +G ADD+ LM WL ++IWP E+ +T ED Y T+L +E+I SG T
Sbjct: 59 GFINAHTHAAMTLLRGYADDLPLMEWLENKIWPLEAKLTPEDIYWGTMLAIVEMIKSGTT 118
Query: 141 CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNF 200
F + + E+A+AVEL G+RA L + + G P+S +
Sbjct: 119 TFNDMYFC-MDEVARAVELSGMRAVLARGMVGVG-----------------PESEQAI-- 158
Query: 201 VSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 260
+EL K A GRI G L ++ E + GIH+HVAE
Sbjct: 159 --EDSRELIGKWQGQAGGRISFRLGPHAPYTCPPAYLERVMQLSDELQAGIHIHVAETRV 216
Query: 261 ENQVVMDTRKVDHGTVTFLDKIEFLQN-NLLSAHTVWVNHTEIGLLSRAGVKVSHCPASA 319
E + ++ ++ V+ L+ + Q +L+AH V +N EIG+L + V V+H P S
Sbjct: 217 EYEDIL--KQYGKTPVSHLESLGLFQGRQVLAAHCVHLNEEEIGILHQYQVGVAHNPESN 274
Query: 320 MRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPA 378
M++ G AP+ ML + I V+LGTDGA SNN + ++ EM +S ++K T DP
Sbjct: 275 MKLASGIAPVPRMLESGIAVALGTDGASSNNNLDMLQEMRSSSFLHK------VNTMDPM 328
Query: 379 ALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCM 438
LPA L MAT NGA S+ N++G LE G +ADM++++ M P +D + ++VY
Sbjct: 329 VLPAYQALEMATANGAISLGMGNELGRLEPGYRADMIIMNLKEAHMTPRYDLLANIVYSA 388
Query: 439 RTENVVSVMCNGQWVMKNKKI 459
+ +V SV+ +G+ VM+N++I
Sbjct: 389 QASDVNSVIIDGKIVMENREI 409
|
Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L-homocysteine, respectively. Is also able to deaminate adenosine. Syntrophomonas wolfei subsp. wolfei (strain Goettingen) (taxid: 335541) EC: 3 EC: . EC: 5 EC: . EC: 4 EC: . EC: 3 EC: 1 |
| >sp|Q2NHL6|MTAD_METST 5-methylthioadenosine/S-adenosylhomocysteine deaminase OS=Methanosphaera stadtmanae (strain DSM 3091) GN=mtaD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (557), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 137/448 (30%), Positives = 229/448 (51%), Gaps = 42/448 (9%)
Query: 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQ 76
S +T IL + DK + + +V + I+ I + A ++ID ++
Sbjct: 2 SETTSILIKDTTILSDK----IKKASILIVDNTIEEISNDLSVTD-----ASKVIDGTNK 52
Query: 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIH 136
I +PG VNTH H + L +G+ DD +L TWL+D IWP E+ + E+ Y + L E+I
Sbjct: 53 ITMPGLVNTHSHVAMTLLRGVGDDEELQTWLNDYIWPKEAKLDEKLVYAGSKLAMAEMIK 112
Query: 137 SGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSI 196
+G T F + ++ E AKAVE G+R L +D + ++ T
Sbjct: 113 TGTTTFNDMYF-YMEETAKAVEESGIRGVLGYGMIDLFDDEKRKQEIKAT---------- 161
Query: 197 SFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVA 256
K L H+ A+GR+++ + LL E++ +A + +H+HV+
Sbjct: 162 ---------KNLIKNSHNTANGRVQVAVAPHAPYTCSKELLSESKKLANKHNLKLHIHVS 212
Query: 257 EIPYENQVVMDTRKVDHGT-VTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHC 315
E E V D K + T +LD I+ L N ++AH VW E+ LL V +SH
Sbjct: 213 ETQQE---VNDLEKQRNQTPFEYLDSIDLLDENTIAAHGVWTTDNEMKLLKEKQVSISHN 269
Query: 316 PASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGT 374
P+S M++ G AP+ + + DI V++GTDG SNN + + EM L +L+ K T
Sbjct: 270 PSSNMKLASGIAPVSKYIKNDINVAIGTDGVSSNNNLDMFSEMKLTALLQKV------NT 323
Query: 375 TDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSL 434
+ LPA+ MAT NGA+++ + GS++ GK AD+V+V+ M+PV + ++++
Sbjct: 324 MNAKTLPAQATFNMATENGARALGI--NTGSIKEGKLADIVLVNMNVPHMIPVRNPLSNI 381
Query: 435 VYCMRTENVVSVMCNGQWVMKNKKILLL 462
+Y +V +V+C+GQ ++++KK+L +
Sbjct: 382 IYSALGSDVDTVICDGQLLLEDKKLLTI 409
|
Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L-homocysteine, respectively. Is also able to deaminate adenosine. Methanosphaera stadtmanae (strain DSM 3091) (taxid: 339860) EC: 3 EC: . EC: 5 EC: . EC: 4 EC: . EC: 3 EC: 1 |
| >sp|Q2RJW1|MTAD_MOOTA 5-methylthioadenosine/S-adenosylhomocysteine deaminase OS=Moorella thermoacetica (strain ATCC 39073) GN=mtaD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (557), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 145/429 (33%), Positives = 219/429 (51%), Gaps = 37/429 (8%)
Query: 37 VFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96
V G + + DR+ +G + + + AD +ID + LPG VN H H + L +
Sbjct: 18 VIGKGVIAINDDRLHYVGPAGGLPAGWQ--ADTVIDAGDMVALPGLVNAHTHAAMTLLRS 75
Query: 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKA 156
ADD+ L WL ++IWP E + ED Y + + +E+I SG T FA+ H+ +A A
Sbjct: 76 YADDLPLKQWLEEKIWPREDRLEREDIYWGSKIALLEMIRSGTTTFADM-YFHMDAVAGA 134
Query: 157 VELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAA 216
V GLRA L Q + +Q S+ S KE H A
Sbjct: 135 VVEAGLRASLCQGLIG-----------------LQDTSNKRLEAGISMVKEW----HGAG 173
Query: 217 DGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGT- 275
+GRI G T L + A G+H+H+AE E + V K +G
Sbjct: 174 EGRITTMLGPHAPNTCTPEYLTRVAETAAGLGVGLHIHLAETRGEVEDV----KARYGAT 229
Query: 276 -VTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPIKEMLH 333
V ++K+ L +L+AH V + EI +L+ V V+HCP S +++ G AP+KEML
Sbjct: 230 PVALVNKLGLLDLPVLAAHCVHLTTEEIAILAEKKVGVAHCPESNLKLASGVAPVKEMLA 289
Query: 334 ADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATING 393
A + V++GTDGA SNN + +V E A+L+ KG T DP +PA L MAT+NG
Sbjct: 290 AGVNVAIGTDGASSNNNLDMVAETRTAALLAKGI------TGDPTVVPAHQALVMATLNG 343
Query: 394 AKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWV 453
A+++ + +IG+LEAGKKAD+++VD ++P +D +LVY R +V +V+ NG+ +
Sbjct: 344 ARALGLEKEIGTLEAGKKADLILVDMRQPHLMPPNDVEANLVYAARGSDVDTVIVNGKIL 403
Query: 454 MKNKKILLL 462
M ++ L
Sbjct: 404 MARGEVKTL 412
|
Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L-homocysteine, respectively. Is also able to deaminate adenosine. Moorella thermoacetica (strain ATCC 39073) (taxid: 264732) EC: 3 EC: . EC: 5 EC: . EC: 4 EC: . EC: 3 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 478 | ||||||
| 255547626 | 471 | Atrazine chlorohydrolase, putative [Rici | 0.903 | 0.917 | 0.790 | 0.0 | |
| 225425192 | 469 | PREDICTED: 5-methylthioadenosine/S-adeno | 0.930 | 0.948 | 0.768 | 0.0 | |
| 147857762 | 470 | hypothetical protein VITISV_008190 [Viti | 0.930 | 0.946 | 0.766 | 0.0 | |
| 449468824 | 484 | PREDICTED: 5-methylthioadenosine/S-adeno | 0.901 | 0.890 | 0.787 | 0.0 | |
| 296088709 | 493 | unnamed protein product [Vitis vinifera] | 0.930 | 0.902 | 0.729 | 0.0 | |
| 357152672 | 468 | PREDICTED: 5-methylthioadenosine/S-adeno | 0.903 | 0.923 | 0.719 | 0.0 | |
| 226502244 | 468 | LOC100283572 [Zea mays] gi|195635661|gb| | 0.895 | 0.914 | 0.725 | 0.0 | |
| 115488528 | 471 | Os12g0468600 [Oryza sativa Japonica Grou | 0.920 | 0.934 | 0.699 | 0.0 | |
| 302794660 | 473 | hypothetical protein SELMODRAFT_444093 [ | 0.912 | 0.921 | 0.625 | 1e-172 | |
| 302824689 | 473 | hypothetical protein SELMODRAFT_431949 [ | 0.912 | 0.921 | 0.625 | 1e-172 |
| >gi|255547626|ref|XP_002514870.1| Atrazine chlorohydrolase, putative [Ricinus communis] gi|223545921|gb|EEF47424.1| Atrazine chlorohydrolase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/444 (79%), Positives = 392/444 (88%), Gaps = 12/444 (2%)
Query: 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQ 76
SS +ILHNA IVTMD ESRVFRNGGVF+ QD+IKAIGQS+DIL ++S +AD II+L Q
Sbjct: 7 SSVLIILHNAAIVTMDAESRVFRNGGVFIEQDKIKAIGQSSDILGEYSTIADHIINLHGQ 66
Query: 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIH 136
LLPGFVNTHVHTSQQL +GIADDVDLMTWLH RIWPYESNMTE DSYISTLLCGIELIH
Sbjct: 67 FLLPGFVNTHVHTSQQLGRGIADDVDLMTWLHRRIWPYESNMTELDSYISTLLCGIELIH 126
Query: 137 SGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSI 196
SGVTCFAEAGGQHVS MAKA E LGLRACL QS MD GEGLP SWA RTTDDCIQ
Sbjct: 127 SGVTCFAEAGGQHVSGMAKAAEELGLRACLTQSVMDSGEGLPPSWASRTTDDCIQ----- 181
Query: 197 SFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVA 256
SQKELY K+H+ A+GRIR+WFGIRQIMN+TDRLLLETRD+ARE TGIHMHV+
Sbjct: 182 -------SQKELYEKYHNTAEGRIRVWFGIRQIMNSTDRLLLETRDIARELNTGIHMHVS 234
Query: 257 EIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCP 316
EI YENQVVMDTRKV+HGTVTFLDKI+FLQ NLL+AHTVWVN+ EIGLLSRAGVKVSHCP
Sbjct: 235 EIAYENQVVMDTRKVEHGTVTFLDKIDFLQKNLLAAHTVWVNNAEIGLLSRAGVKVSHCP 294
Query: 317 ASAMRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTD 376
ASAMRMLGFAPIKEML + ICVS+GTDGAPSNNRMS+VDEMYLASL+NKGREVF NGTT+
Sbjct: 295 ASAMRMLGFAPIKEMLDSSICVSVGTDGAPSNNRMSMVDEMYLASLMNKGREVFTNGTTN 354
Query: 377 PAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVY 436
P LPAETVL+M TINGAK+VLWD++IGS+E GKKAD++V++P +W MVPVHD I+ LVY
Sbjct: 355 PTVLPAETVLKMVTINGAKTVLWDDEIGSIEVGKKADLIVINPSTWSMVPVHDCISGLVY 414
Query: 437 CMRTENVVSVMCNGQWVMKNKKIL 460
CMRTEN+VS+MCNG+W+MK+KKIL
Sbjct: 415 CMRTENIVSIMCNGKWIMKDKKIL 438
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425192|ref|XP_002265828.1| PREDICTED: 5-methylthioadenosine/S-adenosylhomocysteine deaminase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/457 (76%), Positives = 393/457 (85%), Gaps = 12/457 (2%)
Query: 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQ 76
SSS +LHNA+IVTMD E+RVF NG + V +DRI A+GQS +I QF+ +A + DL Q
Sbjct: 5 SSSVTLLHNALIVTMDSETRVFYNGAIVVEKDRIIALGQSHNIFNQFAPLAQNVFDLHGQ 64
Query: 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIH 136
ILLPGF+NTHVHTSQQL +GIADDVDLMTWLH+RIWPYESNMTEEDSYISTLLCGIELIH
Sbjct: 65 ILLPGFINTHVHTSQQLGRGIADDVDLMTWLHERIWPYESNMTEEDSYISTLLCGIELIH 124
Query: 137 SGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSI 196
SGVTCFAEAGGQHVSEMA+AVELLGLRACLVQSTMD G+GLP SWA RTTDDCIQ
Sbjct: 125 SGVTCFAEAGGQHVSEMARAVELLGLRACLVQSTMDSGQGLPPSWADRTTDDCIQ----- 179
Query: 197 SFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVA 256
SQKELY KHH ADGRIRIW GIRQIMNATDRLLLETRD+A+E KTGIHMHVA
Sbjct: 180 -------SQKELYEKHHDTADGRIRIWLGIRQIMNATDRLLLETRDVAKELKTGIHMHVA 232
Query: 257 EIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCP 316
EI YENQVV DTRKVD+GTV++L+KI+ L NLL+AHTVWVN TEIG LSRAGVKVSHCP
Sbjct: 233 EISYENQVVKDTRKVDYGTVSYLEKIDLLNGNLLAAHTVWVNDTEIGFLSRAGVKVSHCP 292
Query: 317 ASAMRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTD 376
ASAMRMLGFAPIKEML A ICVSLGTDGAPSNNRMSIVD+MYLASLINKGREV+ GTTD
Sbjct: 293 ASAMRMLGFAPIKEMLDAGICVSLGTDGAPSNNRMSIVDDMYLASLINKGREVYKLGTTD 352
Query: 377 PAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVY 436
P ALPAET+L+MATINGAK+VLW+N+IGSLE GKKADM++++PFSW M PVHD I+SLVY
Sbjct: 353 PTALPAETILKMATINGAKTVLWENEIGSLEIGKKADMIIINPFSWSMAPVHDCISSLVY 412
Query: 437 CMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDK 473
MR+EN+VSVMCNGQW+MK+ KIL + G + + K
Sbjct: 413 SMRSENIVSVMCNGQWIMKDGKILNVNEGEVISMARK 449
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147857762|emb|CAN80808.1| hypothetical protein VITISV_008190 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/458 (76%), Positives = 392/458 (85%), Gaps = 13/458 (2%)
Query: 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQ 76
SSS +LHNA+IVTMD E+RVF NG + V +DRI A+GQS +I QF+ +A + DL Q
Sbjct: 5 SSSVTLLHNALIVTMDSETRVFYNGAIVVEKDRIIALGQSHNIFNQFAPLAQNVFDLHGQ 64
Query: 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIH 136
ILLPGF+NTHVHTSQQL +GIADDVDLMTWLH+RIWPYESNMTEEDSYISTLLCGIELIH
Sbjct: 65 ILLPGFINTHVHTSQQLGRGIADDVDLMTWLHERIWPYESNMTEEDSYISTLLCGIELIH 124
Query: 137 SGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSI 196
SGVTCFAEAGGQHVSEMA+AVELLGLRACLVQSTMD G+GLP SWA RTTDDCIQ
Sbjct: 125 SGVTCFAEAGGQHVSEMARAVELLGLRACLVQSTMDSGQGLPPSWADRTTDDCIQ----- 179
Query: 197 SFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVA 256
SQKELY KHH ADGRIRIW GIRQIMNATDRLLLETRD+A+E KTGIHMHVA
Sbjct: 180 -------SQKELYEKHHDTADGRIRIWLGIRQIMNATDRLLLETRDVAKELKTGIHMHVA 232
Query: 257 EIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCP 316
EI YENQVV DTRKVD+GTV +L+KI+ L NLL+AHTVWVN TEIG LSRAGVKVSHCP
Sbjct: 233 EISYENQVVKDTRKVDYGTVAYLEKIDLLNGNLLAAHTVWVNDTEIGFLSRAGVKVSHCP 292
Query: 317 ASAMRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTD 376
ASAMRMLGFAPIKEML A ICVSLGTDGAPSNNRMSIVD+MYLASLINKGREV+ GTTD
Sbjct: 293 ASAMRMLGFAPIKEMLDAGICVSLGTDGAPSNNRMSIVDDMYLASLINKGREVYKLGTTD 352
Query: 377 PAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHD-RITSLV 435
P ALPAET+L+MATINGAK+VLW+N+IGSLE GKKADM++++PFSW M PVHD I+SLV
Sbjct: 353 PTALPAETILKMATINGAKTVLWENEIGSLEIGKKADMIIINPFSWSMAPVHDCSISSLV 412
Query: 436 YCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDK 473
Y MR+EN+VSVMCNGQW+MK+ KIL + G + + K
Sbjct: 413 YSMRSENIVSVMCNGQWIMKDGKILNVNEGEIISMARK 450
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449468824|ref|XP_004152121.1| PREDICTED: 5-methylthioadenosine/S-adenosylhomocysteine deaminase-like [Cucumis sativus] gi|449484683|ref|XP_004156951.1| PREDICTED: 5-methylthioadenosine/S-adenosylhomocysteine deaminase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/443 (78%), Positives = 383/443 (86%), Gaps = 12/443 (2%)
Query: 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQI 77
+S +LHNA+I+TMD SRVFRNGG+ + D+IKAIG S++IL QFS A IIDL SQI
Sbjct: 21 NSLTLLHNALIITMDSHSRVFRNGGIVISGDKIKAIGHSSEILHQFSASAHHIIDLHSQI 80
Query: 78 LLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHS 137
LLPGF+NTHVHTSQQLA+ IADDVDLMTWLH RIWPYESNMTEEDSYISTLLCGIELIHS
Sbjct: 81 LLPGFINTHVHTSQQLARSIADDVDLMTWLHHRIWPYESNMTEEDSYISTLLCGIELIHS 140
Query: 138 GVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSIS 197
GVTCFAEAGGQHVS MAKAVELLGLRACL QS MDCGEGLPA WA TTDDCIQ
Sbjct: 141 GVTCFAEAGGQHVSGMAKAVELLGLRACLTQSIMDCGEGLPAPWAAVTTDDCIQ------ 194
Query: 198 FNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAE 257
SQKELY KHH+ ADGRIRIWFGIRQIMNATDRLL+ETRD A E +TGIHMHVAE
Sbjct: 195 ------SQKELYKKHHNTADGRIRIWFGIRQIMNATDRLLIETRDNALELETGIHMHVAE 248
Query: 258 IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPA 317
I YENQ V++ RKVDHGTVT+L+KI+FL NNLLSAHTVWVN EI LSR GVKVSHCPA
Sbjct: 249 IAYENQKVINERKVDHGTVTYLEKIQFLGNNLLSAHTVWVNDNEISFLSRNGVKVSHCPA 308
Query: 318 SAMRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDP 377
SAMRMLGFAPI+EML A ICVS+GTDGAPSNNRMSIVDEMYLASLINKGREV+ANGTT+P
Sbjct: 309 SAMRMLGFAPIREMLDAGICVSIGTDGAPSNNRMSIVDEMYLASLINKGREVYANGTTNP 368
Query: 378 AALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYC 437
+ LPAE VL+M TINGAKSVLWDN+IGSLE GKKADMVV++P SW MVP HD I+ +VY
Sbjct: 369 SVLPAEVVLQMVTINGAKSVLWDNEIGSLEVGKKADMVVINPSSWSMVPSHDSISCIVYS 428
Query: 438 MRTENVVSVMCNGQWVMKNKKIL 460
MRTENV+SVMCNGQW+MK+KKI+
Sbjct: 429 MRTENVISVMCNGQWIMKDKKII 451
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088709|emb|CBI38159.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/481 (72%), Positives = 393/481 (81%), Gaps = 36/481 (7%)
Query: 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQ 76
SSS +LHNA+IVTMD E+RVF NG + V +DRI A+GQS +I QF+ +A + DL Q
Sbjct: 5 SSSVTLLHNALIVTMDSETRVFYNGAIVVEKDRIIALGQSHNIFNQFAPLAQNVFDLHGQ 64
Query: 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIH 136
ILLPGF+NTHVHTSQQL +GIADDVDLMTWLH+RIWPYESNMTEEDSYISTLLCGIELIH
Sbjct: 65 ILLPGFINTHVHTSQQLGRGIADDVDLMTWLHERIWPYESNMTEEDSYISTLLCGIELIH 124
Query: 137 SGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSI 196
SGVTCFAEAGGQHVSEMA+AVELLGLRACLVQSTMD G+GLP SWA RTTDDCIQ
Sbjct: 125 SGVTCFAEAGGQHVSEMARAVELLGLRACLVQSTMDSGQGLPPSWADRTTDDCIQ----- 179
Query: 197 SFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVA 256
SQKELY KHH ADGRIRIW GIRQIMNATDRLLLETRD+A+E KTGIHMHVA
Sbjct: 180 -------SQKELYEKHHDTADGRIRIWLGIRQIMNATDRLLLETRDVAKELKTGIHMHVA 232
Query: 257 EIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE--------------- 301
EI YENQVV DTRKVD+GTV++L+KI+ L NLL+AHTVWVN TE
Sbjct: 233 EISYENQVVKDTRKVDYGTVSYLEKIDLLNGNLLAAHTVWVNDTEHLLLRLSIKSKLATR 292
Query: 302 ---------IGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHADICVSLGTDGAPSNNRMS 352
IG LSRAGVKVSHCPASAMRMLGFAPIKEML A ICVSLGTDGAPSNNRMS
Sbjct: 293 ESLISESVSIGFLSRAGVKVSHCPASAMRMLGFAPIKEMLDAGICVSLGTDGAPSNNRMS 352
Query: 353 IVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKA 412
IVD+MYLASLINKGREV+ GTTDP ALPAET+L+MATINGAK+VLW+N+IGSLE GKKA
Sbjct: 353 IVDDMYLASLINKGREVYKLGTTDPTALPAETILKMATINGAKTVLWENEIGSLEIGKKA 412
Query: 413 DMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQD 472
DM++++PFSW M PVHD I+SLVY MR+EN+VSVMCNGQW+MK+ KIL + G + +
Sbjct: 413 DMIIINPFSWSMAPVHDCISSLVYSMRSENIVSVMCNGQWIMKDGKILNVNEGEVISMAR 472
Query: 473 K 473
K
Sbjct: 473 K 473
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357152672|ref|XP_003576198.1| PREDICTED: 5-methylthioadenosine/S-adenosylhomocysteine deaminase-like isoform 1 [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/445 (71%), Positives = 383/445 (86%), Gaps = 13/445 (2%)
Query: 16 GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQS 75
SS+ ++LHNA +VTMD V R+G V V+ DRI A+G SAD+L F + A Q +DL
Sbjct: 4 ASSADVVLHNAFVVTMDSADAVLRDGAVAVMGDRIAAVGPSADVLAAFPRAA-QTLDLAG 62
Query: 76 QILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELI 135
+IL+PGFVNTHVHTSQQLA+GIADDVDLMTWLH RIWPYES+MTEEDSY STLLC IELI
Sbjct: 63 RILIPGFVNTHVHTSQQLARGIADDVDLMTWLHGRIWPYESHMTEEDSYASTLLCCIELI 122
Query: 136 HSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSS 195
SGVTCFAEAGGQ+VSEMA+AVELLGLRACL +STMDCG+GLP +W+ +TDDCIQ
Sbjct: 123 RSGVTCFAEAGGQYVSEMARAVELLGLRACLTKSTMDCGDGLPPNWSSCSTDDCIQ---- 178
Query: 196 ISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHV 255
SQK+LYAKHH+ ADGRIRIWFG+RQIMNATDRLLLETRD+A+E TGIHMH+
Sbjct: 179 --------SQKDLYAKHHNTADGRIRIWFGLRQIMNATDRLLLETRDVAQELNTGIHMHI 230
Query: 256 AEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHC 315
AEIP+ENQ+VM T+ +DHGTVT+L+KI+FL++NLL+AH+VW+N EI S+AGVKVSHC
Sbjct: 231 AEIPHENQLVMRTKGIDHGTVTYLEKIDFLRSNLLAAHSVWLNEPEINHFSKAGVKVSHC 290
Query: 316 PASAMRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTT 375
PASAMR+LGFAPI+EML + +CVSLGTDGAPSNNRMSIVDEMYLASLINKGREV+ GTT
Sbjct: 291 PASAMRLLGFAPIREMLDSGVCVSLGTDGAPSNNRMSIVDEMYLASLINKGREVYIGGTT 350
Query: 376 DPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLV 435
+P ALP+ETVL+MATINGAK+VLWD++IGSLE GKKAD+VVV+PF W M+P+HD I ++V
Sbjct: 351 NPTALPSETVLKMATINGAKAVLWDDEIGSLEVGKKADLVVVNPFKWSMLPLHDTIANIV 410
Query: 436 YCMRTENVVSVMCNGQWVMKNKKIL 460
YCMRTEN+ SVMCNG+W+MK++KI+
Sbjct: 411 YCMRTENIESVMCNGKWIMKDQKIM 435
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|226502244|ref|NP_001149944.1| LOC100283572 [Zea mays] gi|195635661|gb|ACG37299.1| amidohydrolase family protein [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/441 (72%), Positives = 376/441 (85%), Gaps = 13/441 (2%)
Query: 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPG 81
+ HNAVIVTMD RV ++G V V DRI A+G SAD+L F A Q +DL +I+LP
Sbjct: 10 VFHNAVIVTMDDAFRVLQDGAVAVAGDRIAAVGPSADVLAAFP-CAVQTLDLGGRIVLPE 68
Query: 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTC 141
VNTHVHTSQQLA+GIADDVDLMTWLH RIWPYES+MTEEDSY STLLCGIELI SGVTC
Sbjct: 69 LVNTHVHTSQQLARGIADDVDLMTWLHGRIWPYESHMTEEDSYASTLLCGIELIRSGVTC 128
Query: 142 FAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFV 201
FAEAGGQ VSEMA+AVELLG RACL +STMDCG+GLP +W+ +TDDCIQ
Sbjct: 129 FAEAGGQFVSEMARAVELLGFRACLTKSTMDCGDGLPPNWSCCSTDDCIQ---------- 178
Query: 202 SSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYE 261
SQKELY KHH+ ADGRIRIWFG+RQIMNATDRLLLETRD+A++ TGIHMH+AEIPYE
Sbjct: 179 --SQKELYEKHHNTADGRIRIWFGLRQIMNATDRLLLETRDIAQKLNTGIHMHIAEIPYE 236
Query: 262 NQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMR 321
NQ+++ T+ +DHGTVT+L+KI+FL++NLL+AH+VW+N EIG S+AGVKVSHCPASAMR
Sbjct: 237 NQLILRTKGIDHGTVTYLEKIDFLRSNLLAAHSVWLNVPEIGFFSKAGVKVSHCPASAMR 296
Query: 322 MLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALP 381
MLGFAPI+EML + +CVSLGTDGAPSNNRMSIVDEMYLASLINKGRE + +GTT+P ALP
Sbjct: 297 MLGFAPIREMLDSGVCVSLGTDGAPSNNRMSIVDEMYLASLINKGREAYISGTTNPTALP 356
Query: 382 AETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTE 441
AETVL+MATINGAK+VLWDN+IGSLE GKKAD+VVV+PF+W MVP+HD I ++VYCMRTE
Sbjct: 357 AETVLKMATINGAKAVLWDNEIGSLEVGKKADLVVVNPFTWSMVPLHDSIANIVYCMRTE 416
Query: 442 NVVSVMCNGQWVMKNKKILLL 462
N+ SVMCNG+W+MK+ KI+ L
Sbjct: 417 NIESVMCNGRWIMKDHKIMNL 437
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115488528|ref|NP_001066751.1| Os12g0468600 [Oryza sativa Japonica Group] gi|77555621|gb|ABA98417.1| Amidohydrolase family protein, expressed [Oryza sativa Japonica Group] gi|108862664|gb|ABG22018.1| Amidohydrolase family protein, expressed [Oryza sativa Japonica Group] gi|113649258|dbj|BAF29770.1| Os12g0468600 [Oryza sativa Japonica Group] gi|215686380|dbj|BAG87641.1| unnamed protein product [Oryza sativa Japonica Group] gi|215713483|dbj|BAG94620.1| unnamed protein product [Oryza sativa Japonica Group] gi|222617055|gb|EEE53187.1| hypothetical protein OsJ_36050 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/453 (69%), Positives = 374/453 (82%), Gaps = 13/453 (2%)
Query: 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPG 81
+LH V+V+MD RVF++G V V DRI A+G SAD+L F A +DL +ILLPG
Sbjct: 13 VLHGGVVVSMDGGFRVFQDGAVAVAGDRIAAVGPSADVLSSFPGAA-ATVDLAGRILLPG 71
Query: 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTC 141
FVNTHVHTSQQLA+GIADDVDLM WLH RIWPYES+MTEEDSY STLLCGIELI SGVTC
Sbjct: 72 FVNTHVHTSQQLARGIADDVDLMAWLHGRIWPYESHMTEEDSYASTLLCGIELIRSGVTC 131
Query: 142 FAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFV 201
FAEAGGQ+VSEMA+AVELLGLRACL +S MDCG+GLP +W+ +TDDCIQ
Sbjct: 132 FAEAGGQYVSEMARAVELLGLRACLTKSIMDCGDGLPPNWSSCSTDDCIQ---------- 181
Query: 202 SSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYE 261
SQK+LY KHH+ ADGRIRIWFG+RQIMNATDRLLLETRD A++ TGIHMH+AEIPYE
Sbjct: 182 --SQKDLYEKHHNTADGRIRIWFGLRQIMNATDRLLLETRDAAQKLNTGIHMHIAEIPYE 239
Query: 262 NQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMR 321
N++VM T+ +DHGTVT+L+KI+FL++NLL+AH+VW+N EIG +A VKVSHCPASAMR
Sbjct: 240 NELVMQTKGIDHGTVTYLEKIDFLRSNLLAAHSVWLNKPEIGHFLKADVKVSHCPASAMR 299
Query: 322 MLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALP 381
MLGFAPI+EML + +CVSLGTDGAPSNNRMSIVDEMYLA LINKGRE + GTT+P ALP
Sbjct: 300 MLGFAPIREMLDSGVCVSLGTDGAPSNNRMSIVDEMYLACLINKGREAYITGTTNPTALP 359
Query: 382 AETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTE 441
AETVL+MATINGAK+VLWD++IGSLE GKKADMVVV+P W MVPVHD I ++VYCMRTE
Sbjct: 360 AETVLKMATINGAKAVLWDDEIGSLEVGKKADMVVVNPLIWSMVPVHDCIANIVYCMRTE 419
Query: 442 NVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKL 474
N+ SVMCNG+W+M+ KKI+ L + +K+
Sbjct: 420 NIESVMCNGRWIMREKKIVNLNEEEVIASAEKI 452
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302794660|ref|XP_002979094.1| hypothetical protein SELMODRAFT_444093 [Selaginella moellendorffii] gi|300153412|gb|EFJ20051.1| hypothetical protein SELMODRAFT_444093 [Selaginella moellendorffii] | Back alignment and taxonomy information |
|---|
Score = 612 bits (1579), Expect = e-172, Method: Compositional matrix adjust.
Identities = 280/448 (62%), Positives = 357/448 (79%), Gaps = 12/448 (2%)
Query: 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPG 81
+LH A++VTMD + V+ GG+ + DRI A+G+ IL F+ AD I+DL ++++PG
Sbjct: 13 VLHGAIVVTMDGDRNVYACGGLAMRGDRIIAVGEDQAILADFASGADDIVDLSGRLIIPG 72
Query: 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTC 141
+NTHVHTSQQL +GIADDVDL+TWLH RIWPYES+MT+ DS++STLLCGIELI SGVTC
Sbjct: 73 LINTHVHTSQQLGRGIADDVDLLTWLHKRIWPYESSMTDSDSFLSTLLCGIELIRSGVTC 132
Query: 142 FAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFV 201
FAEAGGQHV MA+AVELLG+RACL +STMD GEGLP+SWA TTD C+
Sbjct: 133 FAEAGGQHVPAMARAVELLGIRACLTRSTMDSGEGLPSSWATETTDSCL----------- 181
Query: 202 SSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYE 261
++Q+ELY + +A GRIR+WFG+RQIMNATD LLL T++ A ++ TGIHMHV+EIPYE
Sbjct: 182 -TAQEELYKSLNGSAGGRIRVWFGLRQIMNATDALLLRTKEAADKYNTGIHMHVSEIPYE 240
Query: 262 NQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMR 321
N+ V+ TR V++GTVT LD+I L NLL+AH+VW+N E+ +++++GVKVSHCPASAMR
Sbjct: 241 NEYVIKTRGVENGTVTHLDRIGVLGENLLAAHSVWINEGEVKMMAKSGVKVSHCPASAMR 300
Query: 322 MLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALP 381
MLGF P++EML +CVS+GTDGAPSNNRMS+VDEMYLASLINKG+ GTTDP ALP
Sbjct: 301 MLGFCPVQEMLEQGVCVSIGTDGAPSNNRMSMVDEMYLASLINKGKLAHTRGTTDPTALP 360
Query: 382 AETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTE 441
AETVL MATINGAKSVLWDN+IGS+E KKAD VV++P +W MVP+HD I+SLVY MR+E
Sbjct: 361 AETVLEMATINGAKSVLWDNEIGSIEVHKKADFVVINPQTWSMVPLHDPISSLVYSMRSE 420
Query: 442 NVVSVMCNGQWVMKNKKILLLMRGRLFQ 469
N+ SV+C+G W+M+++KIL + + +
Sbjct: 421 NIESVICDGVWIMRDRKILTIEEATILK 448
|
Source: Selaginella moellendorffii Species: Selaginella moellendorffii Genus: Selaginella Family: Selaginellaceae Order: Selaginellales Class: Isoetopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302824689|ref|XP_002993985.1| hypothetical protein SELMODRAFT_431949 [Selaginella moellendorffii] gi|300138147|gb|EFJ04925.1| hypothetical protein SELMODRAFT_431949 [Selaginella moellendorffii] | Back alignment and taxonomy information |
|---|
Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust.
Identities = 280/448 (62%), Positives = 357/448 (79%), Gaps = 12/448 (2%)
Query: 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPG 81
+LH A++VTMD + V+ GG+ + DRI A+G+ IL F+ AD I+DL ++++PG
Sbjct: 13 VLHGAIVVTMDGDRNVYACGGLAMRGDRIIAVGEDQAILADFASGADDIVDLSGRLIIPG 72
Query: 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTC 141
+NTHVHTSQQL +GIADDVDL+TWLH RIWPYES+MT+ DS++STLLCGIELI SGVTC
Sbjct: 73 LINTHVHTSQQLGRGIADDVDLLTWLHKRIWPYESSMTDSDSFLSTLLCGIELIRSGVTC 132
Query: 142 FAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFV 201
FAEAGGQHV MA+AVELLG+RACL +STMD GEGLP+SWA TTD C+
Sbjct: 133 FAEAGGQHVPAMARAVELLGIRACLTRSTMDSGEGLPSSWATETTDSCL----------- 181
Query: 202 SSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYE 261
++Q+ELY + +A GRIR+WFG+RQIMNATD LLL T++ A ++ TGIHMHV+EIPYE
Sbjct: 182 -TAQEELYKSLNGSAGGRIRVWFGLRQIMNATDALLLRTKEAADKYNTGIHMHVSEIPYE 240
Query: 262 NQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMR 321
N+ V+ TR V++GTVT LD+I L NLL+AH+VW+N E+ +++++GVKVSHCPASAMR
Sbjct: 241 NEYVIKTRGVENGTVTHLDRIGVLGENLLAAHSVWINEGEVKMMAKSGVKVSHCPASAMR 300
Query: 322 MLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALP 381
MLGF P++EML +CVS+GTDGAPSNNRMS+VDEMYLASLINKG+ GTTDP ALP
Sbjct: 301 MLGFCPVQEMLEQGVCVSIGTDGAPSNNRMSMVDEMYLASLINKGKLAHTRGTTDPTALP 360
Query: 382 AETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTE 441
AETVL MATINGAKSVLWDN+IGS+E KKAD VV++P +W MVP+HD I+SLVY MR+E
Sbjct: 361 AETVLEMATINGAKSVLWDNEIGSIEVHKKADFVVINPQTWSMVPLHDPISSLVYSMRSE 420
Query: 442 NVVSVMCNGQWVMKNKKILLLMRGRLFQ 469
N+ SV+C+G W+M+++KIL + + +
Sbjct: 421 NIESVICDGVWIMRDRKILTIEEATILK 448
|
Source: Selaginella moellendorffii Species: Selaginella moellendorffii Genus: Selaginella Family: Selaginellaceae Order: Selaginellales Class: Isoetopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 478 | ||||||
| ASPGD|ASPL0000035211 | 464 | AN3194 [Emericella nidulans (t | 0.897 | 0.924 | 0.337 | 1.2e-65 | |
| POMBASE|SPAC1F8.04c | 463 | SPAC1F8.04c "hydrolase (predic | 0.907 | 0.937 | 0.305 | 2.4e-53 | |
| UNIPROTKB|Q81S14 | 435 | mtaD "5-methylthioadenosine/S- | 0.527 | 0.579 | 0.303 | 8.7e-45 | |
| TIGR_CMR|BA_1865 | 435 | BA_1865 "chlorohydrolase famil | 0.527 | 0.579 | 0.303 | 8.7e-45 | |
| UNIPROTKB|Q48FM5 | 443 | PSPPH_3669 "Hydrolase, Atz/Trz | 0.493 | 0.532 | 0.314 | 8.5e-43 | |
| TIGR_CMR|CBU_0521 | 484 | CBU_0521 "chlorohydrolase fami | 0.449 | 0.444 | 0.325 | 2.8e-41 | |
| TIGR_CMR|CHY_0698 | 444 | CHY_0698 "amidohydrolase famil | 0.696 | 0.75 | 0.314 | 3.6e-41 | |
| DICTYBASE|DDB_G0285467 | 482 | DDB_G0285467 "putative amidohy | 0.520 | 0.516 | 0.285 | 8.6e-40 | |
| TIGR_CMR|CHY_1438 | 433 | CHY_1438 "amidohydrolase famil | 0.435 | 0.480 | 0.306 | 5.9e-39 | |
| TIGR_CMR|SPO_2957 | 444 | SPO_2957 "hydroxydechloroatraz | 0.880 | 0.948 | 0.244 | 4.7e-21 |
| ASPGD|ASPL0000035211 AN3194 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 153/454 (33%), Positives = 255/454 (56%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQ--DRIKAIGQSADILQQFSQMADQIIDLQSQIL 78
M+ +A I+T+D R+ +G ++V + +RI ++G++A +L Q+ ++ DL +I+
Sbjct: 1 MLFTHATILTLDSTRRIITDGAIYVPRGSNRISSLGKTAALLAQYPD--EEKYDLTGRIV 58
Query: 79 LPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSG 138
+PG V+TH+HT+Q L +G ADD++L++WL +RIW + N T++D Y + L E++ SG
Sbjct: 59 IPGLVSTHMHTAQTLLRGTADDLELVSWLCERIWVLQGNFTKDDGYAAARLSIAEMLKSG 118
Query: 139 VTCFAEA--GGQHVSE-MAKAVELLGLRACLVQSTMDCGE-GLPASWAVRTTDDCIQPDX 194
TCF E+ ++ E + +AV G+R CL + MD G +WA+ P
Sbjct: 119 TTCFLESMFADRYGFEGLCQAVAESGIRGCLGKIVMDKGTYAADDAWAMH-------PGL 171
Query: 195 XXXXXXXXXXQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMH 254
+++ K + AD RIR+WFG R +D L E ++RE I MH
Sbjct: 172 IEDRETSLLGTVKMWEKWNGKADDRIRVWFGARTPGGVSDELYREMTAISREKNIPITMH 231
Query: 255 VAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 314
AE+ + V H +T+ + L + + H V ++ +I LLS +G V+H
Sbjct: 232 CAEVKADRAFF---GSVGHTPMTYCSSVGLLSPSTVLVHMVHLDDRDISLLSESGTHVAH 288
Query: 315 CPASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANG 373
CP S ++ G + ++ A + + LGTDGAP NN ++ EM LA++I+KG
Sbjct: 289 CPTSNAKLASGTCRVPDLQTAGVNIGLGTDGAPCNNTCDLLQEMKLAAIIHKG------A 342
Query: 374 TTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITS 433
+ DP + AE+VL MATINGAK++ D++IGSLE GKKAD V +D M P + +++
Sbjct: 343 SYDPTVVSAESVLEMATINGAKALGLDSEIGSLEVGKKADFVAIDTRGVSMQPWFNPVSA 402
Query: 434 LVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRL 467
+VY +V +V+ +G+ V++N ++L + G++
Sbjct: 403 VVYTATGRDVDTVVVDGRVVVRNGELLTMDEGQI 436
|
|
| POMBASE|SPAC1F8.04c SPAC1F8.04c "hydrolase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
Identities = 141/462 (30%), Positives = 240/462 (51%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQ--DRIKAIGQSADILQQFSQMADQIIDLQSQIL 78
M+ +A I+T++ + +G + V + I IG++ ++ + + L+ I+
Sbjct: 1 MLYTHANIITVNPTRDILIDGAILVKDGSNTIDDIGKTDRLVSIYPNEKHK--SLEGHIV 58
Query: 79 LPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSG 138
+PG ++ HVH +Q L + ADD+ L++WL D +W + N T+ED Y+++ L E++ SG
Sbjct: 59 MPGLISLHVHLAQSLLRSAADDLPLISWLCDTVWKMQGNFTQEDGYVASQLTIAEMLKSG 118
Query: 139 VTCFAEA-GGQH--VSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDXX 195
T F EA Q + KAV G+R C+ + MD P +A +T +
Sbjct: 119 TTTFVEALFAQRYGIEGAVKAVIESGIRGCIGKVVMD----QPR-YATQT--GVSMHEGL 171
Query: 196 XXXXXXXXXQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHV 255
E ++K H +GR+ IWFG R ++ L + +AR GI MH
Sbjct: 172 IENSNSLNQAVESHSKFHGKGNGRVEIWFGARTPGGVSEELYRKMVKIARANNIGITMHC 231
Query: 256 AEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAG--VKVS 313
AE+ + + +H +T+ + L + AH V ++ ++ +L + G V+
Sbjct: 232 AEVKADREFFASK---EHTPMTYCKDLGLLGPKTVLAHMVHLDTQDLEILEKHGNGTSVA 288
Query: 314 HCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFAN 372
HCP S ++ G AP+KEML I V +G DG P NN M ++ EM +ASL+ K +
Sbjct: 289 HCPVSNSKLGSGIAPLKEMLEKSIIVGIGCDGCPCNNTMDLLQEMKMASLLPKA----LH 344
Query: 373 GTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMV-PVHDRI 431
G DP+ +PAE ++ MATINGAK+ L +D+GSLE GKKAD + +D + P+ D +
Sbjct: 345 G--DPSIVPAEKIVEMATINGAKA-LGRDDLGSLEVGKKADFISLDLSNKLYAQPLRDLV 401
Query: 432 TSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDK 473
+++VY +V +V+ +G+ ++++ +L + +L K
Sbjct: 402 SAVVYIATGADVATVVIDGKLIVEDHVLLTIDEPKLIDKAKK 443
|
|
| UNIPROTKB|Q81S14 mtaD "5-methylthioadenosine/S-adenosylhomocysteine deaminase" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 283 (104.7 bits), Expect = 8.7e-45, Sum P(2) = 8.7e-45
Identities = 81/267 (30%), Positives = 131/267 (49%)
Query: 205 QKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQV 264
+ E Y K ++ G + + LL E +A E +T +H+H++E E
Sbjct: 167 EAEKYVKRYYNESGMLTTMVAPHSPYTCSTELLEECARIAVENQTMVHIHLSETERE--- 223
Query: 265 VMDTRKVDHGT--VTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM 322
V D + +G V ++ + + AH V +N E L+ V+V+H P S +++
Sbjct: 224 VRDI-EAQYGKRPVEYVASCGLFKRPTVIAHGVVLNDNERAFLAEHDVRVAHNPNSNLKL 282
Query: 323 -LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALP 381
G A +K ML A + V + TD SNN + + +EM +A+L+ KG D ALP
Sbjct: 283 GSGIANVKAMLEAGMKVGIATDSVASNNNLDMFEEMRIATLLQKGIH------QDATALP 336
Query: 382 AETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWP-MVPVHDRITSLVYCMRT 440
ET L +AT GA V+ GSLE GK AD + +DP + P + P + ++ LVY
Sbjct: 337 VETALTLAT-KGAAEVIGMKQTGSLEVGKCADFITIDPSNKPHLQPADEVLSHLVYAASG 395
Query: 441 ENVVSVMCNGQWVMKNKKILLLMRGRL 467
+++ V+ NG+ V+ N + L R+
Sbjct: 396 KDISDVIINGKRVVWNGECKTLDEERI 422
|
|
| TIGR_CMR|BA_1865 BA_1865 "chlorohydrolase family protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 283 (104.7 bits), Expect = 8.7e-45, Sum P(2) = 8.7e-45
Identities = 81/267 (30%), Positives = 131/267 (49%)
Query: 205 QKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQV 264
+ E Y K ++ G + + LL E +A E +T +H+H++E E
Sbjct: 167 EAEKYVKRYYNESGMLTTMVAPHSPYTCSTELLEECARIAVENQTMVHIHLSETERE--- 223
Query: 265 VMDTRKVDHGT--VTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM 322
V D + +G V ++ + + AH V +N E L+ V+V+H P S +++
Sbjct: 224 VRDI-EAQYGKRPVEYVASCGLFKRPTVIAHGVVLNDNERAFLAEHDVRVAHNPNSNLKL 282
Query: 323 -LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALP 381
G A +K ML A + V + TD SNN + + +EM +A+L+ KG D ALP
Sbjct: 283 GSGIANVKAMLEAGMKVGIATDSVASNNNLDMFEEMRIATLLQKGIH------QDATALP 336
Query: 382 AETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWP-MVPVHDRITSLVYCMRT 440
ET L +AT GA V+ GSLE GK AD + +DP + P + P + ++ LVY
Sbjct: 337 VETALTLAT-KGAAEVIGMKQTGSLEVGKCADFITIDPSNKPHLQPADEVLSHLVYAASG 395
Query: 441 ENVVSVMCNGQWVMKNKKILLLMRGRL 467
+++ V+ NG+ V+ N + L R+
Sbjct: 396 KDISDVIINGKRVVWNGECKTLDEERI 422
|
|
| UNIPROTKB|Q48FM5 PSPPH_3669 "Hydrolase, Atz/Trz family" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] | Back alignment and assigned GO terms |
|---|
Score = 301 (111.0 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 78/248 (31%), Positives = 126/248 (50%)
Query: 213 HHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVD 272
HH RI+I FG D L + R +A E I MHV E +E + ++ R+
Sbjct: 183 HHP---RIKIAFGPHAPYTVGDENLEKVRVIADELDAMIQMHVHETAFEVEQAVEQRQ-- 237
Query: 273 HGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPIKEM 331
+ L+++ L + H +N ++ LL + V HCP S +++ GF P++ +
Sbjct: 238 ERPLARLNRLGMLGPRFQAVHMTQINDDDLALLVESNTNVIHCPESNLKLASGFCPVERL 297
Query: 332 LHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATI 391
A + V++GTDGA SNN + ++ E A+L+ K A T AL A LRMAT+
Sbjct: 298 WQAGVNVAVGTDGAASNNDLDLLGETRTAALLAKA---VAGSAT---ALDAHRALRMATL 351
Query: 392 NGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQ 451
NGA+++ + GSLE GK ADMV D P++D ++ L+Y + V V G+
Sbjct: 352 NGARALGIQAETGSLEIGKAADMVAFDLSGLAQQPIYDPVSQLIYATGRDCVSHVWVAGK 411
Query: 452 WVMKNKKI 459
++ +++
Sbjct: 412 QLLDARRL 419
|
|
| TIGR_CMR|CBU_0521 CBU_0521 "chlorohydrolase family protein" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 296 (109.3 bits), Expect = 2.8e-41, Sum P(2) = 2.8e-41
Identities = 73/224 (32%), Positives = 118/224 (52%)
Query: 233 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSA 292
+D E + +A + IH+H+ E E + + + L + L L++
Sbjct: 230 SDTAFKEIKKLAEYYDLPIHIHLHETKVE--IEQGLKSYGKRPLAHLHDLGLLSQRLIAV 287
Query: 293 HTVWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRM 351
H + EI L++ + HCP S +++ G API +++ A + V++GTDGA SNN +
Sbjct: 288 HMTQLTSEEIKLVADTQTNIVHCPESNLKLSSGIAPIAKLVDAGVNVAIGTDGAASNNDL 347
Query: 352 SIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKK 411
+ EM AS K +G DP LPA +L+MAT+NGAK++ ++ IGSLE GK
Sbjct: 348 DLFGEMRTASFTAK-----VSGL-DPTHLPAPEILKMATLNGAKALGLEDKIGSLEPGKF 401
Query: 412 ADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMK 455
AD++ VD S+ PV + ++ LVY + V V G+ ++K
Sbjct: 402 ADVIAVDLSSFLTQPVFNPVSHLVYAINRLQVSDVWVAGKQLLK 445
|
|
| TIGR_CMR|CHY_0698 CHY_0698 "amidohydrolase family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
Identities = 114/362 (31%), Positives = 188/362 (51%)
Query: 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILL 79
++++ N IVTM+++ + + G +++ + IK IG S D+ D++ID ++++
Sbjct: 2 SILIKNGTIVTMNEKREILK-GDLYIEGNIIKDIGPSLDV------QTDKVIDAAGKVVI 54
Query: 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGI-ELIHSG 138
PG + TH+H Q L +G ADD++L+ WL RIWP E E Y S +L GI EL G
Sbjct: 55 PGLIQTHIHLCQTLFRGQADDLELLDWLKLRIWPLEGGHDPESLYYSAML-GIGELFKGG 113
Query: 139 VTCFAE-AGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDXXXX 197
T + A H +A+ G+RA + MD G +P S TT++ I
Sbjct: 114 TTAIVDMATVNHTDSNFQAIYDSGIRAISGKCMMDYGTEVPKSMQ-DTTENAIDESV--- 169
Query: 198 XXXXXXXQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAE 257
+L K H +GRI F R ++ T+ LL E +A ++K +H H +E
Sbjct: 170 ---------QLLEKWHGKDNGRILYAFTPRFAVSCTEDLLKEVVKLAEQYKVRVHTHASE 220
Query: 258 IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPA 317
E ++V+ R + + V +L+K+ NL+ AH + ++ E+ +L+ + K++HCP+
Sbjct: 221 NKGEVELVLKERGMRN--VLYLEKLGMTAPNLILAHCIHLDEREMKVLAESKTKIAHCPS 278
Query: 318 SAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTD 376
S +++ G A I E+L +S+ DGAP NN + EM +A+LI K F T+
Sbjct: 279 SNLKLASGIAKIPELLEMGAEISIAADGAPCNNNLDAFIEMRMAALIQKP---FYGPTSM 335
Query: 377 PA 378
PA
Sbjct: 336 PA 337
|
|
| DICTYBASE|DDB_G0285467 DDB_G0285467 "putative amidohydrolase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 303 (111.7 bits), Expect = 8.6e-40, Sum P(2) = 8.6e-40
Identities = 75/263 (28%), Positives = 143/263 (54%)
Query: 219 RIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTF 278
+I+I G + TD L+ ++++ ++ IH H+ E +E V + + +
Sbjct: 214 KIKISLGPHAVYTITDEAYLKVKELSEKYGVKIHTHLHETTHE--VSEEVKVSGKRPIER 271
Query: 279 LDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM--LGFAPIKEMLHADI 336
L + L ++L++AH + ++ L +++G+ V HCP S +++ G +P+ ++L +
Sbjct: 272 LRDLGVLSSSLIAAHMTQLTSEDLDLTAKSGINVVHCPESNLKLGVKGISPVHKLLKQGV 331
Query: 337 CVSLGTDGAPSNNRMSIVDEMYLASLINK-GREVFANGTTDPAALPAETVLRMATINGAK 395
VS+GTD A SN+ + ++ E+ A+ I+K + +P P+ +L MATINGAK
Sbjct: 332 NVSVGTDSAASNDDLDMLGELRTAAYIDKLSANTHSIEGGEPVT-PSYKILSMATINGAK 390
Query: 396 SVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMK 455
++ D+ +GSL+ GK AD + V S P V+D I+ LVY + T +V V G+ +++
Sbjct: 391 ALGIDDKVGSLQIGKFADFIAVKVSSHP---VYDPISHLVY-VGTNHVTDVWVAGKQLLR 446
Query: 456 NKKILLL----MRGRLFQLQDKL 474
N K+ + ++ R+ + K+
Sbjct: 447 NSKLTTVNENQVKSRVLEFSQKI 469
|
|
| TIGR_CMR|CHY_1438 CHY_1438 "amidohydrolase family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 257 (95.5 bits), Expect = 5.9e-39, Sum P(2) = 5.9e-39
Identities = 68/222 (30%), Positives = 120/222 (54%)
Query: 244 AREFKTGIHMHVAEIPYENQVVMDTRKVDHGT--VTFLDKIEFLQNNLLSAHTVWVNHTE 301
A+ I++H++E E ++ K +GT V L+ + + + AH V V+ E
Sbjct: 204 AKRLNVPINIHISETLDEISII----KERYGTTPVRHLESLGLFEVKTIGAHLVHVDDEE 259
Query: 302 IGLLSRAGVKVSHCPASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLA 360
I +L R V H P S M++ G AP+ +ML A + V LGTDGA SNN + +++E+ A
Sbjct: 260 IQILKRYQVGAIHNPQSNMKLASGIAPVAKMLEAGVLVGLGTDGAASNNDLDMIEELRAA 319
Query: 361 SLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF 420
S + K + +P AL A+T + MAT GA++ L ++G L+ G KAD+++++
Sbjct: 320 SYLQKVSSM------NPEALNAKTSIAMATSLGARA-LGLTEVGLLKEGYKADIILLNTN 372
Query: 421 SWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLL 462
P H+ + Y + +V +V+ +G+ +M+ +++ L
Sbjct: 373 ETNFYPRHNIFNLIAYSAKGADVDTVIVDGEIIMEKRQLTRL 414
|
|
| TIGR_CMR|SPO_2957 SPO_2957 "hydroxydechloroatrazine ethylaminohydrolase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 269 (99.8 bits), Expect = 4.7e-21, P = 4.7e-21
Identities = 114/466 (24%), Positives = 198/466 (42%)
Query: 22 ILHNA-VIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
++ NA I+TMD R + + + AIG + L ++ + + ++ P
Sbjct: 5 LIRNADTILTMDAGRRELAGADILIRDGIVAAIGPNLATL-------GEVHEARGCVVTP 57
Query: 81 GFVNTHVHTSQQLAKGI--ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSG 138
G VNTH H Q L + + D L WL ++P + E+ ++S EL SG
Sbjct: 58 GLVNTHHHLYQSLTRAVPGGQDALLFGWLKT-LYPIWARFGPEEMFVSAQTGLAELALSG 116
Query: 139 VTCFAE-----AGGQHVSEMAKAVELLGLRACLVQSTMDCGE---GLPASWAVRTTDDCI 190
T ++ G + + A LGLR + M GE GLP V + I
Sbjct: 117 CTLSSDHLYLYPNGARLDDTIAAATELGLRFHPTRGAMSIGESAGGLPPDTLVEG-EAAI 175
Query: 191 QPDXXXXXXXXXXXQKELYAKHHHAADGRI-RIWFGIRQIMNATDRLLLETRDMAREFKT 249
D + H A +G + R+ + + L+ + +AR+
Sbjct: 176 LDDMI-----------RVVDAFHDAGEGSMCRVGLAPCSPFSVSRDLMRDAALLARDKGV 224
Query: 250 GIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAG 309
+H H+AE + + + + + + + ++ AH V ++ EI L +R+
Sbjct: 225 MLHTHLAE--NDEDIAYSLAQFGCRPGQYAEDLGWTGPDVWHAHCVKLDGQEIDLFARSR 282
Query: 310 VKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGRE 368
V+HCP S R+ G AP++ M A + V LG DG+ SN+ +++ E A L+ +
Sbjct: 283 TGVAHCPCSNCRLGSGIAPVRAMRDAGVSVGLGVDGSASNDSGNLMGEARQAMLLQR--- 339
Query: 369 VFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVH 428
A G A+ A L +AT GA VL D G LE GK+AD+ + D
Sbjct: 340 -VARGAD---AMSAREALEIATRGGA-DVLGRPDCGRLELGKRADIAIWDVSGINSAGSW 394
Query: 429 DRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKL 474
D +L+ T V + G+ ++++ +I+ + + + Q++L
Sbjct: 395 DP-AALLLAGPTR-VKHLFVEGRQIVRDGQIITIDLPHMIERQNRL 438
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O27549 | MTAD_METTH | 3, ., 5, ., 4, ., 3, 1 | 0.3378 | 0.8263 | 0.9250 | yes | no |
| B7IS56 | MTAD_BACC2 | 3, ., 5, ., 4, ., 3, 1 | 0.3051 | 0.8619 | 0.9471 | yes | no |
| Q92342 | YDI4_SCHPO | No assigned EC number | 0.3060 | 0.9037 | 0.9330 | yes | no |
| Q2LTB7 | MTAD1_SYNAS | 3, ., 5, ., 4, ., 3, 1 | 0.3137 | 0.8577 | 0.9255 | yes | no |
| Q0AYV2 | MTAD_SYNWW | 3, ., 5, ., 4, ., 3, 1 | 0.3401 | 0.8472 | 0.9396 | yes | no |
| B0K2W0 | MTAD_THEPX | 3, ., 5, ., 4, ., 3, 1 | 0.3356 | 0.8472 | 0.9396 | yes | no |
| C6A048 | MTAD_THESM | 3, ., 5, ., 4, ., 3, 1 | 0.3057 | 0.8284 | 0.9339 | yes | no |
| A5D1G6 | MTAD_PELTS | 3, ., 5, ., 4, ., 3, 1 | 0.3526 | 0.8535 | 0.9422 | yes | no |
| Q466Q9 | MTAD_METBF | 3, ., 5, ., 4, ., 3, 1 | 0.3488 | 0.8640 | 0.9560 | yes | no |
| A3DEQ2 | MTAD_CLOTH | 3, ., 5, ., 4, ., 3, 1 | 0.3061 | 0.8535 | 0.9466 | yes | no |
| C1EPN0 | MTAD_BACC3 | 3, ., 5, ., 4, ., 3, 1 | 0.3006 | 0.8619 | 0.9471 | yes | no |
| B1I2P4 | MTAD_DESAP | 3, ., 5, ., 4, ., 3, 1 | 0.3301 | 0.8096 | 0.9 | yes | no |
| Q63CU1 | MTAD_BACCZ | 3, ., 5, ., 4, ., 3, 1 | 0.3006 | 0.8619 | 0.9471 | yes | no |
| B7JJI0 | MTAD_BACC0 | 3, ., 5, ., 4, ., 3, 1 | 0.3028 | 0.8619 | 0.9471 | yes | no |
| B0K8R8 | MTAD_THEP3 | 3, ., 5, ., 4, ., 3, 1 | 0.3356 | 0.8472 | 0.9396 | yes | no |
| Q8TYD4 | MTAD_METKA | 3, ., 5, ., 4, ., 3, 1 | 0.3114 | 0.8284 | 0.9187 | yes | no |
| O31352 | MTAD_BACC1 | 3, ., 5, ., 4, ., 3, 1 | 0.3051 | 0.8619 | 0.9471 | yes | no |
| Q8PUQ3 | MTAD_METMA | 3, ., 5, ., 4, ., 3, 1 | 0.3414 | 0.8723 | 0.9652 | yes | no |
| B7HIQ2 | MTAD_BACC4 | 3, ., 5, ., 4, ., 3, 1 | 0.3051 | 0.8619 | 0.9471 | yes | no |
| Q8TRA4 | MTAD_METAC | 3, ., 5, ., 4, ., 3, 1 | 0.3384 | 0.8598 | 0.9513 | yes | no |
| Q81F14 | MTAD_BACCR | 3, ., 5, ., 4, ., 3, 1 | 0.3073 | 0.8619 | 0.9471 | yes | no |
| A1VD37 | MTAD_DESVV | 3, ., 5, ., 4, ., 3, 1 | 0.3195 | 0.8263 | 0.8936 | yes | no |
| C3P768 | MTAD_BACAA | 3, ., 5, ., 4, ., 3, 1 | 0.3028 | 0.8619 | 0.9471 | yes | no |
| C3L6N3 | MTAD_BACAC | 3, ., 5, ., 4, ., 3, 1 | 0.3028 | 0.8619 | 0.9471 | yes | no |
| A5UMN6 | MTAD_METS3 | 3, ., 5, ., 4, ., 3, 1 | 0.3632 | 0.8702 | 0.9563 | yes | no |
| Q72B14 | MTAD_DESVH | 3, ., 5, ., 4, ., 3, 1 | 0.3195 | 0.8263 | 0.8936 | yes | no |
| B8J2Q8 | MTAD_DESDA | 3, ., 5, ., 4, ., 3, 1 | 0.3122 | 0.8451 | 0.9181 | yes | no |
| Q81S14 | MTAD_BACAN | 3, ., 5, ., 4, ., 3, 1 | 0.3028 | 0.8619 | 0.9471 | yes | no |
| Q12WS1 | MTAD_METBU | 3, ., 5, ., 4, ., 3, 1 | 0.3199 | 0.8493 | 0.9354 | yes | no |
| A0LMI3 | MTAD_SYNFM | 3, ., 5, ., 4, ., 3, 1 | 0.3178 | 0.8598 | 0.9383 | yes | no |
| A0RCM7 | MTAD_BACAH | 3, ., 5, ., 4, ., 3, 1 | 0.3006 | 0.8619 | 0.9471 | yes | no |
| B7HMN9 | MTAD_BACC7 | 3, ., 5, ., 4, ., 3, 1 | 0.3051 | 0.8619 | 0.9471 | yes | no |
| Q2NHL6 | MTAD_METST | 3, ., 5, ., 4, ., 3, 1 | 0.3058 | 0.8493 | 0.9552 | yes | no |
| Q6HK87 | MTAD_BACHK | 3, ., 5, ., 4, ., 3, 1 | 0.3006 | 0.8619 | 0.9471 | yes | no |
| B5YDN9 | MTAD_DICT6 | 3, ., 5, ., 4, ., 3, 1 | 0.3177 | 0.8430 | 0.9460 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.5.4.28 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.5.4 | 0.766 |
| 3rd Layer | 3.5.4.n1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 478 | |||
| cd01298 | 411 | cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enz | 1e-143 | |
| PRK07228 | 445 | PRK07228, PRK07228, N-ethylammeline chlorohydrolas | 1e-108 | |
| PRK06038 | 430 | PRK06038, PRK06038, N-ethylammeline chlorohydrolas | 2e-93 | |
| COG0402 | 421 | COG0402, SsnA, Cytosine deaminase and related meta | 8e-82 | |
| PRK09045 | 443 | PRK09045, PRK09045, N-ethylammeline chlorohydrolas | 1e-78 | |
| PRK08393 | 424 | PRK08393, PRK08393, N-ethylammeline chlorohydrolas | 4e-72 | |
| PRK06380 | 418 | PRK06380, PRK06380, metal-dependent hydrolase; Pro | 3e-71 | |
| PRK08203 | 451 | PRK08203, PRK08203, hydroxydechloroatrazine ethyla | 2e-63 | |
| PRK06687 | 419 | PRK06687, PRK06687, chlorohydrolase; Validated | 3e-57 | |
| PRK15493 | 435 | PRK15493, PRK15493, 5-methylthioadenosine/S-adenos | 7e-56 | |
| PRK07203 | 442 | PRK07203, PRK07203, putative chlorohydrolase/amino | 4e-47 | |
| PRK08204 | 449 | PRK08204, PRK08204, hypothetical protein; Provisio | 8e-43 | |
| TIGR03314 | 441 | TIGR03314, Se_ssnA, putative selenium metabolism p | 3e-41 | |
| PRK12393 | 457 | PRK12393, PRK12393, amidohydrolase; Provisional | 2e-37 | |
| cd01303 | 429 | cd01303, GDEase, Guanine deaminase (GDEase) | 1e-32 | |
| TIGR02967 | 401 | TIGR02967, guan_deamin, guanine deaminase | 3e-29 | |
| PRK06151 | 488 | PRK06151, PRK06151, N-ethylammeline chlorohydrolas | 1e-27 | |
| cd01313 | 418 | cd01313, Met_dep_hydrolase_E, Metallo-dependent hy | 3e-19 | |
| cd01312 | 381 | cd01312, Met_dep_hydrolase_D, Metallo-dependent hy | 4e-19 | |
| PRK09228 | 433 | PRK09228, PRK09228, guanine deaminase; Provisional | 2e-18 | |
| pfam01979 | 307 | pfam01979, Amidohydro_1, Amidohydrolase family | 1e-17 | |
| cd01292 | 275 | cd01292, metallo-dependent_hydrolases, Superfamily | 4e-16 | |
| COG1228 | 406 | COG1228, HutI, Imidazolonepropionase and related a | 8e-16 | |
| PRK08418 | 408 | PRK08418, PRK08418, chlorohydrolase; Provisional | 2e-15 | |
| TIGR02022 | 454 | TIGR02022, hutF, formiminoglutamate deiminase | 1e-10 | |
| cd01300 | 479 | cd01300, YtcJ_like, YtcJ_like metal dependent amid | 4e-10 | |
| pfam13147 | 304 | pfam13147, Amidohydro_4, Amidohydrolase | 6e-10 | |
| PRK09229 | 456 | PRK09229, PRK09229, N-formimino-L-glutamate deimin | 8e-10 | |
| cd01296 | 371 | cd01296, Imidazolone-5PH, Imidazolonepropionase/im | 1e-09 | |
| cd01305 | 263 | cd01305, archeal_chlorohydrolases, Predicted chlor | 2e-09 | |
| COG1574 | 535 | COG1574, COG1574, Predicted metal-dependent hydrol | 4e-09 | |
| COG1574 | 535 | COG1574, COG1574, Predicted metal-dependent hydrol | 6e-09 | |
| PRK07213 | 375 | PRK07213, PRK07213, chlorohydrolase; Provisional | 2e-08 | |
| PRK09356 | 406 | PRK09356, PRK09356, imidazolonepropionase; Validat | 4e-08 | |
| PRK09356 | 406 | PRK09356, PRK09356, imidazolonepropionase; Validat | 5e-08 | |
| TIGR01224 | 377 | TIGR01224, hutI, imidazolonepropionase | 1e-07 | |
| cd01309 | 359 | cd01309, Met_dep_hydrolase_C, Metallo-dependent hy | 5e-07 | |
| pfam13594 | 66 | pfam13594, Amidohydro_5, Amidohydrolase | 1e-06 | |
| cd00854 | 374 | cd00854, NagA, N-acetylglucosamine-6-phosphate dea | 2e-06 | |
| cd01299 | 342 | cd01299, Met_dep_hydrolase_A, Metallo-dependent hy | 2e-06 | |
| cd01300 | 479 | cd01300, YtcJ_like, YtcJ_like metal dependent amid | 2e-05 | |
| pfam07969 | 392 | pfam07969, Amidohydro_3, Amidohydrolase family | 5e-05 | |
| PRK08418 | 408 | PRK08418, PRK08418, chlorohydrolase; Provisional | 6e-05 | |
| PRK10657 | 388 | PRK10657, PRK10657, isoaspartyl dipeptidase; Provi | 7e-05 | |
| COG0044 | 430 | COG0044, PyrC, Dihydroorotase and related cyclic a | 8e-05 | |
| COG1820 | 380 | COG1820, NagA, N-acetylglucosamine-6-phosphate dea | 9e-05 | |
| COG1820 | 380 | COG1820, NagA, N-acetylglucosamine-6-phosphate dea | 1e-04 | |
| cd00854 | 374 | cd00854, NagA, N-acetylglucosamine-6-phosphate dea | 2e-04 | |
| PRK09357 | 423 | PRK09357, pyrC, dihydroorotase; Validated | 3e-04 | |
| COG1001 | 584 | COG1001, AdeC, Adenine deaminase [Nucleotide trans | 4e-04 | |
| PRK13404 | 477 | PRK13404, PRK13404, dihydropyrimidinase; Provision | 6e-04 | |
| PRK09236 | 444 | PRK09236, PRK09236, dihydroorotase; Reviewed | 6e-04 | |
| PRK14085 | 382 | PRK14085, PRK14085, imidazolonepropionase; Provisi | 8e-04 | |
| cd01296 | 371 | cd01296, Imidazolone-5PH, Imidazolonepropionase/im | 0.001 | |
| PRK10657 | 388 | PRK10657, PRK10657, isoaspartyl dipeptidase; Provi | 0.001 | |
| PRK15446 | 383 | PRK15446, PRK15446, phosphonate metabolism protein | 0.001 | |
| PRK05985 | 391 | PRK05985, PRK05985, cytosine deaminase; Provisiona | 0.002 | |
| cd01295 | 422 | cd01295, AdeC, Adenine deaminase (AdeC) directly d | 0.002 | |
| TIGR03178 | 443 | TIGR03178, allantoinase, allantoinase | 0.002 | |
| cd01297 | 415 | cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D | 0.003 |
| >gnl|CDD|238623 cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases | Back alignment and domain information |
|---|
Score = 415 bits (1069), Expect = e-143
Identities = 172/443 (38%), Positives = 253/443 (57%), Gaps = 35/443 (7%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+++ N IVT D RV +G V V RI A+G + + AD++ID + ++++P
Sbjct: 1 ILIRNGTIVTTD-PRRVLEDGDVLVEDGRIVAVGPAL---PLPAYPADEVIDAKGKVVMP 56
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
G VNTH H + L +G+ADD+ LM WL D IWP E +TEED Y+ LL E+I SG T
Sbjct: 57 GLVNTHTHLAMTLLRGLADDLPLMEWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTT 116
Query: 141 CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNF 200
FA+ + +A+A E LG+RA L + MD G V T++ +
Sbjct: 117 TFADMYFFYPDAVAEAAEELGIRAVLGRGIMDLGTE-----DVEETEEALA--------- 162
Query: 201 VSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 260
+ L + H AADGRIR+ +D LL E ++ARE+ +H+H+AE
Sbjct: 163 ---EAERLIREWHGAADGRIRVALAPHAPYTCSDELLREVAELAREYGVPLHIHLAETED 219
Query: 261 ENQVVMDTRKVDHG--TVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPAS 318
E ++ +G V +L+++ L +++ AH VW+ EI LL+ G V+H PAS
Sbjct: 220 E----VEESLEKYGKRPVEYLEELGLLGPDVVLAHCVWLTDEEIELLAETGTGVAHNPAS 275
Query: 319 AMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDP 377
M++ G AP+ EML A + V LGTDGA SNN + + +EM LA+L+ K +G DP
Sbjct: 276 NMKLASGIAPVPEMLEAGVNVGLGTDGAASNNNLDMFEEMRLAALLQKLA----HG--DP 329
Query: 378 AALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYC 437
ALPAE L MATI GAK++ D +IGSLE GKKAD++++D ++PVHD I+ LVY
Sbjct: 330 TALPAEEALEMATIGGAKALGLD-EIGSLEVGKKADLILIDLDGPHLLPVHDPISHLVYS 388
Query: 438 MRTENVVSVMCNGQWVMKNKKIL 460
+V +V+ NG+ VM++ ++L
Sbjct: 389 ANGGDVDTVIVNGRVVMEDGELL 411
|
Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD. Length = 411 |
| >gnl|CDD|180895 PRK07228, PRK07228, N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 326 bits (839), Expect = e-108
Identities = 154/445 (34%), Positives = 237/445 (53%), Gaps = 31/445 (6%)
Query: 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQIL 78
T+++ NA IVTM+ R +G V + DRI A+G D+ + D ID +++
Sbjct: 1 MTILIKNAGIVTMN-AKREIVDGDVLIEDDRIAAVGDRLDL-----EDYDDHIDATGKVV 54
Query: 79 LPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSG 138
+PG + H+H Q L +GIADD++L+ WL DRIWP E+ E Y S LL ELI SG
Sbjct: 55 IPGLIQGHIHLCQTLFRGIADDLELLDWLKDRIWPLEAAHDAESMYYSALLGIGELIESG 114
Query: 139 VTCFAEAGGQHVSEMA-KAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSIS 197
T + H ++ A +A G+RA L + MD G+ +P T+ +
Sbjct: 115 TTTIVDMESVHHTDSAFEAAGESGIRAVLGKVMMDYGDDVPEGLQ-EDTEASLA------ 167
Query: 198 FNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAE 257
L K H A +GRIR F R ++ T+ LL RD+A E+ IH H +E
Sbjct: 168 ------ESVRLLEKWHGADNGRIRYAFTPRFAVSCTEELLRGVRDLADEYGVRIHTHASE 221
Query: 258 IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPA 317
E + V + + + + +LD++ +L+ AH VW++ E +L+ G V+HCP+
Sbjct: 222 NRGEIETVEEETGMRN--IHYLDEVGLTGEDLILAHCVWLDEEEREILAETGTHVTHCPS 279
Query: 318 SAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTD 376
S +++ G AP+ ++L I V+LG DGAP NN + EM A+LI K +
Sbjct: 280 SNLKLASGIAPVPDLLERGINVALGADGAPCNNTLDPFTEMRQAALIQKVDRL------G 333
Query: 377 PAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVH--DRITSL 434
P A+PA TV MAT+ GAK+ ++++IGSLE GKKAD+ ++D P H D ++ L
Sbjct: 334 PTAMPARTVFEMATLGGAKAAGFEDEIGSLEEGKKADLAILDLDGLHATPSHGVDVLSHL 393
Query: 435 VYCMRTENVVSVMCNGQWVMKNKKI 459
VY +V + M +G+ VM++ ++
Sbjct: 394 VYAAHGSDVETTMVDGKIVMEDGEL 418
|
Length = 445 |
| >gnl|CDD|180363 PRK06038, PRK06038, N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 289 bits (742), Expect = 2e-93
Identities = 154/443 (34%), Positives = 240/443 (54%), Gaps = 39/443 (8%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ NA ++TMD + + G V + I + +S AD +ID + +++P
Sbjct: 4 IIIKNAYVLTMD--AGDLKKGSVVIEDGTITEVSEST------PGDADTVIDAKGSVVMP 55
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
G VNTH H + L +G ADD+ L WL+D IWP E+ +T ED Y +LL +E+I SG T
Sbjct: 56 GLVNTHTHAAMTLFRGYADDLPLAEWLNDHIWPAEAKLTAEDVYAGSLLACLEMIKSGTT 115
Query: 141 CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNF 200
FA+ ++ E+AKAVE GLRA L +D G+ D+ + + F
Sbjct: 116 SFADM-YFYMDEVAKAVEESGLRAALSYGMIDLGD-----------DEKGEAELKEGKRF 163
Query: 201 VSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 260
V H AADGRI++ +G ++ L + + +A + GIH+HV E
Sbjct: 164 VKEW--------HGAADGRIKVMYGPHAPYTCSEEFLSKVKKLANKDGVGIHIHVLET-- 213
Query: 261 ENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAM 320
E ++ + +V +LD I FL ++L+AH VW++ +I +L GV VSH P S M
Sbjct: 214 EAELNQMKEQYGMCSVNYLDDIGFLGPDVLAAHCVWLSDGDIEILRERGVNVSHNPVSNM 273
Query: 321 RML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAA 379
++ G AP+ ++L + VSLGTDG SNN + + +EM A+L++K T DP A
Sbjct: 274 KLASGIAPVPKLLERGVNVSLGTDGCASNNNLDMFEEMKTAALLHK------VNTMDPTA 327
Query: 380 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMR 439
LPA VL MAT+NGAK++ + G L+ G AD+++VD + PV D + LVY
Sbjct: 328 LPARQVLEMATVNGAKAL--GINTGMLKEGYLADIIIVDMNKPHLTPVRDVPSHLVYSAS 385
Query: 440 TENVVSVMCNGQWVMKNKKILLL 462
+V + + +G+ +M++ K+L +
Sbjct: 386 GSDVDTTIVDGRILMEDYKVLCM 408
|
Length = 430 |
| >gnl|CDD|223479 COG0402, SsnA, Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 259 bits (663), Expect = 8e-82
Identities = 136/455 (29%), Positives = 223/455 (49%), Gaps = 39/455 (8%)
Query: 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQI 77
+ +++ +++T D E R+ +G + + +I AIG +A+ +++ID + ++
Sbjct: 1 MTMLLIRGDLLLTNDPEGRI-EDGDLVIEDGKIVAIGANAEGPP-----DEEVIDAKGKL 54
Query: 78 LLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNM-TEEDSYISTLLCGIELIH 136
+LPGFVN H H Q L +G+ADD+ L+ WL +WP E+ + TEED Y LL +E++
Sbjct: 55 VLPGFVNAHTHLDQTLLRGLADDLPLLEWLERYVWPREARLLTEEDLYARALLALLEMLR 114
Query: 137 SGVTC---FAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPD 193
+G T + + +A +GLRA L D P A D
Sbjct: 115 NGTTTARTHVDVVAESADAAFEAALEVGLRAVLGPVLQD--VAFPDPGAET--------D 164
Query: 194 SSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHM 253
+ +EL + H GR + + LL ++AR++ +H+
Sbjct: 165 EELEET------EELLREAHGL--GRDVVGLAPHFPYTVSPELLESLDELARKYGLPVHI 216
Query: 254 HVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVS 313
H+AE E V V LD + L ++ L AH V ++ E+ LL+ +G V
Sbjct: 217 HLAETLDE--VERVLEPYGARPVERLDLLGLLGSHTLLAHCVHLSEEELELLAESGASVV 274
Query: 314 HCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFAN 372
HCP S +++ G AP++ +L + V+LGTDGA SNN + ++ EM A L+ K
Sbjct: 275 HCPRSNLKLGSGIAPVRRLLERGVNVALGTDGAASNNVLDMLREMRTADLLQKLA----- 329
Query: 373 GTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRIT 432
AA L MAT+ GAK L +DIGSLE GKKAD+VV+D + + P+ ++
Sbjct: 330 -GGLLAAQLPGEALDMATLGGAK-ALGLDDIGSLEVGKKADLVVLDASAPHLAPLR-PVS 386
Query: 433 SLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRL 467
LV+ ++V V+ +G+ VM++ ++L
Sbjct: 387 RLVFAAGGKDVDRVLVDGRLVMEDGRLLARAEAAR 421
|
Length = 421 |
| >gnl|CDD|236366 PRK09045, PRK09045, N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 251 bits (644), Expect = 1e-78
Identities = 147/468 (31%), Positives = 221/468 (47%), Gaps = 62/468 (13%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+++ IV ++ V + V + RI AI A+ +++ A + ++L +L+P
Sbjct: 9 LLIEARWIVPVEPAGVVLEDHAVAIRDGRIVAILPRAEARARYA--AAETVELPDHVLIP 66
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDS-YISTLLCGIELIHSGV 139
G +N H H + L +G+ADD+ LMTWL D IWP E E+ TLL E++ G
Sbjct: 67 GLINAHTHAAMSLLRGLADDLPLMTWLQDHIWPAEGAWVSEEFVRDGTLLAIAEMLRGGT 126
Query: 140 TCFAEAGGQHVSEM-------AKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQP 192
TCF ++M A+A G+RA + +D P +WA D+ +
Sbjct: 127 TCF--------NDMYFFPEAAAEAAHQAGMRAQIGMPVLD----FPTAWA-SDADEYL-- 171
Query: 193 DSSISFNFVSSSQK--ELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTG 250
K EL+ + H I F +D L R +A +
Sbjct: 172 ------------AKGLELHDQWRH--HPLISTAFAPHAPYTVSDENLERIRTLAEQLDLP 217
Query: 251 IHMHVAEIPYENQVVMDTRKVDHGT--VTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRA 308
IH+H+ E E + D+ K HG + L ++ L L++ H + EI LL+
Sbjct: 218 IHIHLHETAQE---IADSLK-QHGQRPLARLARLGLLGPRLIAVHMTQLTDAEIALLAET 273
Query: 309 GVKVSHCPASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGR 367
G V HCP S +++ GF P+ ++L A + V+LGTDGA SNN + + EM A+L+ K
Sbjct: 274 GCSVVHCPESNLKLASGFCPVAKLLQAGVNVALGTDGAASNNDLDLFGEMRTAALLAKA- 332
Query: 368 EVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPV 427
D ALPA T LRMAT+NGA+++ D++IGSLE GK+AD+V VD PV
Sbjct: 333 -----VAGDATALPAHTALRMATLNGARALGLDDEIGSLEPGKQADLVAVDLSGLETQPV 387
Query: 428 HDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLL 475
+D ++ LVY E V V G+ LL L L + L
Sbjct: 388 YDPVSQLVYAAGREQVSHVWVAGK--------QLLDDRELTTLDEAEL 427
|
Length = 443 |
| >gnl|CDD|181411 PRK08393, PRK08393, N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 233 bits (597), Expect = 4e-72
Identities = 138/425 (32%), Positives = 225/425 (52%), Gaps = 45/425 (10%)
Query: 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVD 102
V + ++I + ++ ++ AD +ID ++ PGF+N H H+ L +G+ADDV
Sbjct: 23 VLIEGNKIVEVKRN------INKPADTVIDASGSVVSPGFINAHTHSPMVLLRGLADDVP 76
Query: 103 LMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGL 162
LM WL + IWP E + +D Y L +E+I SG T F + H+ E+AKA +GL
Sbjct: 77 LMEWLQNYIWPRERKLKRKDIYWGAYLGLLEMIKSGTTTFVDMYF-HMEEVAKATLEVGL 135
Query: 163 RACLVQSTMDCGEGLPASWAVRTTD---DCIQPDSSISFNFVSSSQKELYAKHHHAADGR 219
R L +D G+ ++ T+ + I+ +S +FV
Sbjct: 136 RGYLSYGMVDLGDEEKREKEIKETEKLMEFIEKLNSPRVHFV------------------ 177
Query: 220 IRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFL 279
FG + LL R+ ARE+ I +H++E E + + K V L
Sbjct: 178 ----FGPHAPYTCSLALLKWVREKAREWNKLITIHLSETMDEIKQI--REKYGKSPVVLL 231
Query: 280 DKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICV 338
D+I FL ++++AH VW++ +I +L+ AGV V+H PAS M++ G P++++L+A + V
Sbjct: 232 DEIGFLNEDVIAAHGVWLSSRDIRILASAGVTVAHNPASNMKLGSGVMPLRKLLNAGVNV 291
Query: 339 SLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVL 398
+LGTDGA SNN + ++ EM LA+L++K DP AETV RMAT NGAK++
Sbjct: 292 ALGTDGAASNNNLDMLREMKLAALLHKVH------NLDPTIADAETVFRMATQNGAKALG 345
Query: 399 WDNDIGSLEAGKKADMVVVDPFSWP-MVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNK 457
G ++ G AD+ V+D F+ P + P+++ I+ LVY +V + + +G+ VM +
Sbjct: 346 LKA--GVIKEGYLADIAVID-FNRPHLRPINNPISHLVYSANGNDVETTIVDGKIVMLDG 402
Query: 458 KILLL 462
++L L
Sbjct: 403 EVLTL 407
|
Length = 424 |
| >gnl|CDD|180548 PRK06380, PRK06380, metal-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 231 bits (591), Expect = 3e-71
Identities = 143/450 (31%), Positives = 235/450 (52%), Gaps = 55/450 (12%)
Query: 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILL 79
++++ NA IVT +++ + + G V++ ++I +G + AD IID ++++
Sbjct: 2 SILIKNAWIVTQNEKREILQ-GNVYIEGNKIVYVGDVNE-------EADYIIDATGKVVM 53
Query: 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGV 139
PG +NTH H +KG+ DDVDL +L + + Y+S T E Y S L E+I+SG+
Sbjct: 54 PGLINTHAHVGMTASKGLFDDVDLEEFL-MKTFKYDSKRTREGIYNSAKLGMYEMINSGI 112
Query: 140 TCFAEAGGQHVSE--MAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSI- 196
T F + + SE +AKA E LG+RA L SWAV + Q +
Sbjct: 113 TAFVDL---YYSEDIIAKAAEELGIRAFL-------------SWAVLDEEITTQKGDPLN 156
Query: 197 -SFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHV 255
+ NF+ + E + G++ I A D L+ +++A ++ T +HMH+
Sbjct: 157 NAENFIREHRNEEL----------VTPSIGVQGIYVANDETYLKAKEIAEKYDTIMHMHL 206
Query: 256 AEIPYENQVVMDTRK-VDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 314
+E E V D K V L+KI FL + L++AH VW + EI LLS+ GVKVS
Sbjct: 207 SETRKE---VYDHVKRTGERPVEHLEKIGFLNSKLIAAHCVWATYHEIKLLSKNGVKVSW 263
Query: 315 CPASAMRML--GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFAN 372
S ++ G PI EML I V++GTD SNN + + + M ++L K N
Sbjct: 264 NSVSNFKLGTGGSPPIPEMLDNGINVTIGTDSNGSNNSLDMFEAMKFSALSVK------N 317
Query: 373 GTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPV--HDR 430
D + + A+ +L ATIN AK++ + + GS+E GK AD+V++D + M+P ++
Sbjct: 318 ERWDASIIKAQEILDFATINAAKAL--ELNAGSIEVGKLADLVILDARAPNMIPTRKNNI 375
Query: 431 ITSLVYCMRTENVVSVMCNGQWVMKNKKIL 460
++++VY + NV V+ NG+ + +N ++
Sbjct: 376 VSNIVYSLNPLNVDHVIVNGKILKENGRLN 405
|
Length = 418 |
| >gnl|CDD|236184 PRK08203, PRK08203, hydroxydechloroatrazine ethylaminohydrolase; Reviewed | Back alignment and domain information |
|---|
Score = 212 bits (541), Expect = 2e-63
Identities = 135/463 (29%), Positives = 213/463 (46%), Gaps = 54/463 (11%)
Query: 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQI 77
++ I + IVTMD R +GG+ V RI +G + Q AD++ D + +
Sbjct: 1 TTLWIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGGALPQP----ADEVFDARGHV 56
Query: 78 LLPGFVNTHVHTSQQLAKGI--ADDVDLMTWLHD--RIWPYESNMTEEDSYISTLLCGIE 133
+ PG VNTH H Q L + + A D +L WL +W + +T E ++T E
Sbjct: 57 VTPGLVNTHHHFYQTLTRALPAAQDAELFPWLTTLYPVW---ARLTPEMVRVATQTALAE 113
Query: 134 LIHSGVTC-------FAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGE---GLPASWAV 183
L+ SG T F + + +A +G+R + +M GE GLP V
Sbjct: 114 LLLSGCTTSSDHHYLFPNGLRDALDDQIEAAREIGMRFHATRGSMSLGESDGGLPPDSVV 173
Query: 184 RTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADG-RIRIWFGIRQIMNATDRLLLETRD 242
D I DS + L ++H G +RI + + L+ E+
Sbjct: 174 EDEDA-ILADS-----------QRLIDRYHDPGPGAMLRIALAPCSPFSVSRELMRESAA 221
Query: 243 MAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEI 302
+AR +H H+AE E + + V +L+ + +L ++ AH V ++ EI
Sbjct: 222 LARRLGVRLHTHLAETLDEEAFCL--ERFGMRPVDYLEDLGWLGPDVWLAHCVHLDDAEI 279
Query: 303 GLLSRAGVKVSHCPASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLAS 361
L+R G V+HCP S MR+ G AP++E+ A + V LG DG+ SN+ +++ E A
Sbjct: 280 ARLARTGTGVAHCPCSNMRLASGIAPVRELRAAGVPVGLGVDGSASNDGSNLIGEARQAL 339
Query: 362 LINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVD--- 418
L+ + R G P A+ A L AT+ GA+ VL +DIGSL GK AD+ + D
Sbjct: 340 LLQRLR----YG---PDAMTAREALEWATLGGAR-VLGRDDIGSLAPGKLADLALFDLDE 391
Query: 419 -PFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKIL 460
F+ HD + +LV C VM G+WV+++ ++
Sbjct: 392 LRFA----GAHDPVAALVLC-GPPRADRVMVGGRWVVRDGQLT 429
|
Length = 451 |
| >gnl|CDD|180657 PRK06687, PRK06687, chlorohydrolase; Validated | Back alignment and domain information |
|---|
Score = 194 bits (495), Expect = 3e-57
Identities = 128/445 (28%), Positives = 224/445 (50%), Gaps = 38/445 (8%)
Query: 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPG 81
+ + IVT D++ V+ +G + V +I +GQ F + A+QIID Q ++PG
Sbjct: 3 VFQHVNIVTCDQDFHVYLDGILAVKDSQIVYVGQDK---PAFLEQAEQIIDYQGAWIMPG 59
Query: 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTC 141
VN H H++ +GI DD +L WL+D IWP ES T + + + E++ SG T
Sbjct: 60 LVNCHTHSAMTGLRGIRDDSNLHEWLNDYIWPAESEFTPDMTTNAVKEALTEMLQSGTTT 119
Query: 142 FAE---AGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISF 198
F + G + ++ + V+ +R C T+ E + + T I D + +
Sbjct: 120 FNDMYNPNGVDIQQIYQVVKTSKMR-CYFSPTLFSSETETTAETISRTRSII--DEILKY 176
Query: 199 NFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLE-TRDMAREFKTGIHMHVAE 257
+ + K + A H + R LLE + +MA+E +H+HVAE
Sbjct: 177 K--NPNFKVMVAPHSPYS----------------CSRDLLEASLEMAKELNIPLHVHVAE 218
Query: 258 IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPA 317
E+ +++ ++ + FL+++ +L + + AH V +N EI L+ + V ++H P
Sbjct: 219 TKEESGIIL--KRYGKRPLAFLEELGYLDHPSVFAHGVELNEREIERLASSQVAIAHNPI 276
Query: 318 SAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTD 376
S +++ G API ++ A + V + TD SNN + + +E A+L+ K + D
Sbjct: 277 SNLKLASGIAPIIQLQKAGVAVGIATDSVASNNNLDMFEEGRTAALLQKMKS------GD 330
Query: 377 PAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFS-WPMVPVHDRITSLV 435
+ P ET L++ TI GAK++ +N IGSLE GK+AD +V+ P + P + ++ LV
Sbjct: 331 ASQFPIETALKVLTIEGAKALGMENQIGSLEVGKQADFLVIQPQGKIHLQPQENMLSHLV 390
Query: 436 YCMRTENVVSVMCNGQWVMKNKKIL 460
Y +++ +V V G+ V+K ++L
Sbjct: 391 YAVKSSDVDDVYIAGEQVVKQGQVL 415
|
Length = 419 |
| >gnl|CDD|185390 PRK15493, PRK15493, 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 7e-56
Identities = 133/437 (30%), Positives = 209/437 (47%), Gaps = 37/437 (8%)
Query: 25 NAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVN 84
NA IVTM++++ V NG + V D+I + S + F D++ID++ + +LPG VN
Sbjct: 7 NATIVTMNEQNEVIENGYIIVENDQIIDV-NSGEFASDFE--VDEVIDMKGKWVLPGLVN 63
Query: 85 THVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAE 144
TH H L +GI DD+ L WL RIWP ES T E + ST L +E++ SG T F++
Sbjct: 64 THTHVVMSLLRGIGDDMLLQPWLETRIWPLESQFTPELAVASTELGLLEMVKSGTTSFSD 123
Query: 145 AG---GQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFV 201
G + + V G+RA + ++ G A+
Sbjct: 124 MFNPIGVDQDAIMETVSRSGMRAAVSRTLFSFGTKEDEKKAIE----------------- 166
Query: 202 SSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYE 261
+ E Y K ++ G + + LL E +A E +T +H+H++E E
Sbjct: 167 ---EAEKYVKRYYNESGMLTTMVAPHSPYTCSTELLEECARIAVENQTMVHIHLSETERE 223
Query: 262 NQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMR 321
+ + + V + + + AH V +N E L+ V+V+H P S ++
Sbjct: 224 VRDI--EAQYGKRPVEYAASCGLFKRPTVIAHGVVLNDNERAFLAEHDVRVAHNPNSNLK 281
Query: 322 M-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAAL 380
+ G A +K ML A I V + TD SNN + + +EM +A+L+ KG D AL
Sbjct: 282 LGSGIANVKAMLEAGIKVGIATDSVASNNNLDMFEEMRIATLLQKGIH------QDATAL 335
Query: 381 PAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWP-MVPVHDRITSLVYCMR 439
P ET L +AT GA V+ GSLE GK AD + +DP + P + P + ++ LVY
Sbjct: 336 PVETALTLAT-KGAAEVIGMKQTGSLEVGKCADFITIDPSNKPHLQPADEVLSHLVYAAS 394
Query: 440 TENVVSVMCNGQWVMKN 456
+++ V+ NG+ V+ N
Sbjct: 395 GKDISDVIINGKRVVWN 411
|
Length = 435 |
| >gnl|CDD|235963 PRK07203, PRK07203, putative chlorohydrolase/aminohydrolase; Validated | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 4e-47
Identities = 123/460 (26%), Positives = 206/460 (44%), Gaps = 61/460 (13%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+++ N +T D V +G + + + I IG + ++ ++ + ID + ++++P
Sbjct: 2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAKYPD--AEFIDAKGKLIMP 59
Query: 81 GFVNTHVHTSQQLAKGIADDV----DLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIH 136
G +N+H H LA+G+ ++ D ++ L + W + +T ED Y S L+C +E I
Sbjct: 60 GLINSHNHIYSGLARGMMANIPPPPDFISILKNLWWRLDRALTLEDVYYSALICSLEAIK 119
Query: 137 SGVTC-------FAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDC 189
+GVT GG + +A A + +GLRA L T D R +
Sbjct: 120 NGVTTVFDHHASPNYIGGS-LFTIADAAKKVGLRAMLCYETSD-----------RDGEK- 166
Query: 190 IQPDSSISFNFVSSSQKELYAKHHHAADG-RIRIWFGIRQIMNATDRLLLETRDMAREFK 248
+ + N + KH A + FG+ +D L + R+ +E
Sbjct: 167 -ELQEGVEEN-------IRFIKHIDEAKDDMVEAMFGLHASFTLSDATLEKCREAVKETG 218
Query: 249 TGIHMHVAEIPYENQVVMDTRKVDHGT--VTFLDKIEFLQNNLLSAHTVWVNHTEIGLLS 306
G H+HVAE Y+ V D+ K +G V L L L+AH ++++ EI LL
Sbjct: 219 RGYHIHVAEGIYD---VSDSHK-KYGKDIVERLADFGLLGEKTLAAHCIYLSDEEIDLLK 274
Query: 307 RAGVKVSHCPASAM-RMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINK 365
V H P S M +G+ P+ EM+ I + LGTDG S+ + + +A+ +K
Sbjct: 275 ETDTFVVHNPESNMGNAVGYNPVLEMIKNGILLGLGTDGYTSD----MFESYKVANFKHK 330
Query: 366 GREVFANGTTDPAALPAETVLRMATINGAKSV--LWDNDIGSLEAGKKADMVVVD--PFS 421
A G DP E M N K + G LE G KAD+++VD P +
Sbjct: 331 ----HAGG--DPNVGWPE-SPAMLFENNNKIAERYFGAKFGILEEGAKADLIIVDYNPPT 383
Query: 422 WPMVPVHDRITS-LVYCMRTENVVSVMCNGQWVMKNKKIL 460
P+ D I +++ M +V + + NG+ VM+++K L
Sbjct: 384 -PLNE--DNINGHILFGMNGGSVDTTIVNGKVVMEDRKFL 420
|
Length = 442 |
| >gnl|CDD|181288 PRK08204, PRK08204, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 8e-43
Identities = 112/456 (24%), Positives = 177/456 (38%), Gaps = 53/456 (11%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
++ ++TMD G + + DRI A+ S + +++D + I++P
Sbjct: 4 TLIRGGTVLTMDPAIGDLPRGDILIEGDRIAAVAPSIE------APDAEVVDARGMIVMP 57
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMT---WLHDRIWPYESNMTEEDSYISTLLCGIELIHS 137
G V+TH HT Q + +GI D L T +H + P ED YI+ LL +E + +
Sbjct: 58 GLVDTHRHTWQSVLRGIGADWTLQTYFREIHGNLGPM---FRPEDVYIANLLGALEALDA 114
Query: 138 GVT-----CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQP 192
GVT +H + + G+RA G P D P
Sbjct: 115 GVTTLLDWSHINNSPEHADAAIRGLAEAGIRAVF-------AHGSPGPSPYWPFDSVPHP 167
Query: 193 DSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIH 252
I + + ++ + DG + + IR ++ + +ARE I
Sbjct: 168 REDI---------RRVKKRYFSSDDGLLTLGLAIRGPEFSSWEVARADFRLARELGLPIS 218
Query: 253 MHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKV 312
MH V L L +L H ++ E+ LL+ +G
Sbjct: 219 MHQG---------FGPWGATPRGVEQLHDAGLLGPDLNLVHGNDLSDDELKLLADSGGSF 269
Query: 313 SHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNN-----RMSIVDEMYLASLINKG 366
S P M M G+ +L + SLG D S +M + A
Sbjct: 270 SVTPEIEMMMGHGYPVTGRLLAHGVRPSLGVDVVTSTGGDMFTQMRFALQAERARD---N 326
Query: 367 REVFANGTT--DPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPM 424
G L A VL ATI GA+++ ++ IGSL GK+AD+V++D +
Sbjct: 327 AVHLREGGMPPPRLTLTARQVLEWATIEGARALGLEDRIGSLTPGKQADLVLIDATDLNL 386
Query: 425 VPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKIL 460
PVHD + ++V NV SVM G+ V +N K+L
Sbjct: 387 APVHDPVGAVVQSAHPGNVDSVMVAGRAVKRNGKLL 422
|
Length = 449 |
| >gnl|CDD|132357 TIGR03314, Se_ssnA, putative selenium metabolism protein SsnA | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 3e-41
Identities = 119/456 (26%), Positives = 195/456 (42%), Gaps = 53/456 (11%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+++ N V +D + G + + D IKA+G + ++ Q++ ID + ++++P
Sbjct: 1 LLIGNGTAVQLDPTRPIQEGGDIAIDGDVIKAVGPTEELKQKYP--EATFIDAKGKLIMP 58
Query: 81 GFVNTHVHTSQQLAKGIADDV----DLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIH 136
GF+NTH H A+G+ D+ D ++ L + W + +T ED Y S L+C ++ I
Sbjct: 59 GFINTHNHFYSTFARGMMADIPPPPDFISILKNLWWRLDRALTLEDVYYSGLICSLDAIK 118
Query: 137 SGVTC-------FAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDC 189
SG T G +S + KA + GLR L T D G V
Sbjct: 119 SGCTTVIDHHASPNAITGS-LSTIRKAADEAGLRTMLCYETSDRDGGKEMQEGV------ 171
Query: 190 IQPDSSISFNFVSSSQKELYAKHHHAADGR-IRIWFGIRQIMNATDRLLLETRDMAREFK 248
+ +I+F K + + G +D L R+ +
Sbjct: 172 ---EENIAF-----------IKKSSGKEPYLVEAHIGAHAPFTVSDAGLEMCREAVQATG 217
Query: 249 TGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRA 308
G H+HVAE Y+ V K V L L + L+AH ++++ EI LL+
Sbjct: 218 RGFHIHVAEDIYD--VEDSHHKYGKDIVERLADFGLLGSKTLAAHCIYLSDREIELLNET 275
Query: 309 GVKVSHCPASAM-RMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGR 367
V H P S M +G+ P+ M I + LGTDG S+ + + + A+ +K
Sbjct: 276 DTFVVHNPESNMGNAVGYNPVLRMFKNGILLGLGTDGYTSD----MFESLKFANFKHK-- 329
Query: 368 EVFANGTTDPAALPAETVLRMATINGAK--SVLWDNDIGSLEAGKKADMVVVDPFSWPMV 425
A G D A E M N + + G LE G KAD+++VD ++ P
Sbjct: 330 --DAGG--DLNAAWPE-SPAMLFENNNEIAERNFGAKFGRLEPGAKADLIIVD-YNAPTP 383
Query: 426 PVHDRITS-LVYCMRTENVVSVMCNGQWVMKNKKIL 460
D I +++ M +V S M NG+ VM++++ L
Sbjct: 384 LTADNINGHILFGMNGGSVDSTMVNGKVVMEDREFL 419
|
Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown. Length = 441 |
| >gnl|CDD|237088 PRK12393, PRK12393, amidohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 2e-37
Identities = 117/462 (25%), Positives = 198/462 (42%), Gaps = 48/462 (10%)
Query: 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQD-RIKAIGQSADILQQFSQMADQIIDLQS 75
S +I + A I+T G ++D RI AIG +++ID
Sbjct: 1 MPSLLIRNAAAIMTGLPGDAARLGGPDIRIRDGRIAAIGALT------PLPGERVIDATD 54
Query: 76 QILLPGFVNTHVHTSQQLAKGI--ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIE 133
++ PG+VNTH H Q L KG+ + L WL + + + E+ ++ + +E
Sbjct: 55 CVVYPGWVNTHHHLFQSLLKGVPAGINQSLTAWLAAVPYRFRARFDEDLFRLAARIGLVE 114
Query: 134 LIHSGVTCFAE------AGGQHVSEMA--KAVELLGLRACLVQSTMDCGEGLPASWAVRT 185
L+ SG T A+ G + E LG+R L + G
Sbjct: 115 LLRSGCTTVADHHYLYHPGMPFDTGDILFDEAEALGMRFVLCRGGATQTRGDHPGLPT-- 172
Query: 186 TDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIM-------NATDRLLL 238
++P++ + + + + L +++H A+ +R R ++ + LL
Sbjct: 173 ---ALRPET---LDQMLADVERLVSRYHDASPDSLR-----RVVVAPTTPTFSLPPELLR 221
Query: 239 ETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN 298
E AR +H H++E + V K V F+ + ++L ++ AH V ++
Sbjct: 222 EVARAARGMGLRLHSHLSET--VDYVDFCREKYGMTPVQFVAEHDWLGPDVWFAHLVKLD 279
Query: 299 HTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEM 357
EI LL++ G ++HCP S R+ G AP M A + VSLG DGA SN ++ E
Sbjct: 280 AEEIALLAQTGTGIAHCPQSNGRLGSGIAPALAMEAAGVPVSLGVDGAASNESADMLSEA 339
Query: 358 YLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVV 417
+ A L+++ G A E V+ T GA+ VL + IG+L G+ AD+ +
Sbjct: 340 HAAWLLHR----AEGG---ADATTVEDVVHWGTAGGAR-VLGLDAIGTLAVGQAADLAIY 391
Query: 418 DPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKI 459
D +HD + V C V +++ NG+ V++N I
Sbjct: 392 DLDDPRFFGLHDPAIAPVACGGPAPVKALLVNGRPVVENGAI 433
|
Length = 457 |
| >gnl|CDD|238628 cd01303, GDEase, Guanine deaminase (GDEase) | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 1e-32
Identities = 109/449 (24%), Positives = 178/449 (39%), Gaps = 59/449 (13%)
Query: 28 IVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHV 87
+ ++ RV +G + VV I A G + + + A ++ID +Q +LPGF++TH+
Sbjct: 14 LELVEDALRVVEDGLIVVVDGNIIAAGAAETLKRAAKPGA-RVIDSPNQFILPGFIDTHI 72
Query: 88 HTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEED-------SYISTLLCGIELIHSGVT 140
H Q G L+ WL +P E+ + ++ EL+ +G T
Sbjct: 73 HAPQYANIGSGLGEPLLDWLETYTFPEEAKFADPAYAREVYGRFLD------ELLRNGTT 126
Query: 141 C---FAEAGGQHVSEMAKAVELLGLRACLVQSTMD--CGEGL--PASWAVRTTDDCIQPD 193
FA + + + G RA + MD E A + R T I+
Sbjct: 127 TACYFATIHPESTEALFEEAAKRGQRAIAGKVCMDRNAPEYYRDTAESSYRDTKRLIE-- 184
Query: 194 SSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREF-KTGIH 252
H GR++ R + ++ LL +A+E I
Sbjct: 185 ------------------RWHGKSGRVKPAITPRFAPSCSEELLAALGKLAKEHPDLHIQ 226
Query: 253 MHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKV 312
H++E E V + + DK L + AH V ++ E LL G V
Sbjct: 227 THISENLDEIAWVKELFPGARDYLDVYDKYGLLTEKTVLAHCVHLSEEEFNLLKERGASV 286
Query: 313 SHCPASAMRML--GFAPIKEMLHADICVSLGTD-GAPSNNRMSIVDEMYLASLINKGREV 369
+HCP S + L G ++++L A I V LGTD G S++D + A +++
Sbjct: 287 AHCPTSNL-FLGSGLFDVRKLLDAGIKVGLGTDVGG--GTSFSMLDTLRQAYKVSRLLGY 343
Query: 370 FANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWP-MVPVH 428
A L +AT+ GA+++ D+ IG+ E GK+ D VV+DP + P +
Sbjct: 344 ---ELGGHAKLSPAEAFYLATLGGAEALGLDDKIGNFEVGKEFDAVVIDPSATPLLADRM 400
Query: 429 DRITSL-------VYCMRTENVVSVMCNG 450
R+ SL +Y N+ V G
Sbjct: 401 FRVESLEEALFKFLYLGDDRNIREVYVAG 429
|
Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool. Length = 429 |
| >gnl|CDD|132012 TIGR02967, guan_deamin, guanine deaminase | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 3e-29
Identities = 98/415 (23%), Positives = 174/415 (41%), Gaps = 54/415 (13%)
Query: 36 RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQ--QL 93
F +G + V RI A+G A++ + +I D + +++PGF++TH+H Q +
Sbjct: 2 EYFEDGLLVVENGRIVAVGDYAELKETLPA-GVEIDDYRGHLIMPGFIDTHIHYPQTEMI 60
Query: 94 AKGIADDVDLMTWLHDRIWPYESNMTEED--SYISTLLCGIELIHSGVTC---FAEAGGQ 148
A + L+ WL +P E+ + D ++ EL+ +G T FA +
Sbjct: 61 A---SYGEQLLEWLEKYTFPTEARFADPDHAEEVAEFFLD-ELLRNGTTTALVFATVHPE 116
Query: 149 HVSEMAKAVELLGLRACLVQSTMD--CGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQK 206
V + +A G+R + MD + L R T +SS K
Sbjct: 117 SVDALFEAALKRGMRMIAGKVLMDRNAPDYL------RDT-----AESSYD------ESK 159
Query: 207 ELYAKHHHAADGRIRIWFGI--RQIMNATDRLLLETRDMAREFK-TGIHMHVAEIPYENQ 263
L + H G+ R+ + + R ++ L ++A+E+ + H++E E
Sbjct: 160 ALIERWH----GKGRLLYAVTPRFAPTSSPEQLAAAGELAKEYPDVYVQTHLSENKDEIA 215
Query: 264 VVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM- 322
V + + D L + AH + ++ E L+ G ++HCP S + +
Sbjct: 216 WVKELFPEAKDYLDVYDHYGLLGRRSVFAHCIHLSDEECQRLAETGAAIAHCPTSNLFLG 275
Query: 323 LGFAPIKEMLHADICVSLGTD--GAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAAL 380
G +K+ L + V LGTD G S + + + E Y S + R L
Sbjct: 276 SGLFNLKKALEHGVRVGLGTDVGGGTSFSMLQTLREAYKVSQLQGAR------------L 323
Query: 381 PAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWP-MVPVHDRITSL 434
+AT+ GA+++ D+ IG+ E GK+AD VV+DP + P + + +L
Sbjct: 324 SPFEAFYLATLGGARALDLDDRIGNFEPGKEADFVVLDPAATPLLALRFEGADTL 378
|
This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model [Purines, pyrimidines, nucleosides, and nucleotides, Other]. Length = 401 |
| >gnl|CDD|180428 PRK06151, PRK06151, N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-27
Identities = 109/465 (23%), Positives = 181/465 (38%), Gaps = 82/465 (17%)
Query: 36 RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95
R+ R+G V DRI +G F D++ID + ++ PGF++ +
Sbjct: 19 RLLRDGEVVFEGDRILFVGHR------FDGEVDRVIDAGNALVGPGFIDLDALS------ 66
Query: 96 GIADDVD---LMTWLHD-----RIWP-------YESNMTEEDSYISTLLCGIELIHSGVT 140
D+D L R+W T E+ +L+ +G+T
Sbjct: 67 ----DLDTTILGLDNGPGWAKGRVWSRDYVEAGRREMYTPEELAFQKRYAFAQLLRNGIT 122
Query: 141 CFAEAG-------GQHVSEMAKAVEL---LGLRACLVQSTMDCGEGLPASWAVRTTDDCI 190
+ +E A A E LGLR L + G A + +
Sbjct: 123 TAMPIASLFYRQWAETYAEFAAAAEAAGRLGLRVYLGPAYR---SGGSVLEADGSLEVVF 179
Query: 191 QPDSSISFNFVSSSQKELYAKHHHAA-DGRIRIWFGIRQIMNATDRLLLETRDMAREFKT 249
++ + + K A +G +R +I T LL T ARE
Sbjct: 180 DEARGLA----GLEEAIAFIKRVDGAHNGLVRGMLAPDRIETCTVDLLRRTAAAARELGC 235
Query: 250 GIHMHVAEIPYENQVVMDTRKVDHGT--VTFLDKIEFLQNNLLSAHTVWVNHTE------ 301
+ +H A+ E ++T + HGT + +L + L LL H +++ +
Sbjct: 236 PVRLHCAQGVLE----VETVRRLHGTTPLEWLADVGLLGPRLLIPHATYISGSPRLNYSG 291
Query: 302 ---IGLLSRAGVKVSHCPASAMRMLG----FAPIKEMLHADICVSLGTDGAPSNNRMSIV 354
+ LL+ GV + HCP + R F +E A I ++LGTD P + M++
Sbjct: 292 GDDLALLAEHGVSIVHCPLVSARHGSALNSFDRYRE---AGINLALGTDTFPPDMVMNMR 348
Query: 355 DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADM 414
+ L ++ D A A + AT+ GA++ L +D+G L G KAD+
Sbjct: 349 VGLILGRVVEG----------DLDAASAADLFDAATLGGARA-LGRDDLGRLAPGAKADI 397
Query: 415 VVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKI 459
VV D M PV D I +LV +V +V +G+ VM++ ++
Sbjct: 398 VVFDLDGLHMGPVFDPIRTLVTGGSGRDVRAVFVDGRVVMEDGRL 442
|
Length = 488 |
| >gnl|CDD|238638 cd01313, Met_dep_hydrolase_E, Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 3e-19
Identities = 90/425 (21%), Positives = 141/425 (33%), Gaps = 89/425 (20%)
Query: 36 RVFRNGGVFVVQD-RIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLA 94
RN + V D RI A+ A + + L LLPG N H H Q+
Sbjct: 6 GWERNVRIEVDADGRIAAVNPDT---------ATEAVALLGGALLPGMPNLHSHAFQRAM 56
Query: 95 KGIADDVDLMTWLHDRIWPYESNM-------TEEDSYISTLLCGIELIHSGVTCFAEAGG 147
G+ + D W + M T E IE++ +G+T E
Sbjct: 57 AGLTEYRGSAA---DSFWTWRELMYRFAARLTPEQIEAIARQLYIEMLLAGITAVGEFHY 113
Query: 148 QH----------VSEMAKAV----ELLGLRACLVQ---STMDCGEGLPASWAVRTTDDCI 190
H +E+A+ V G+ L+ + G P R I
Sbjct: 114 VHHDPDGTPYADPAELAQRVIAAASDAGIGITLLPVLYARAGFGGPAPNPGQRRF----I 169
Query: 191 QPDSSISFNFVSSSQKELYAKHH------HAADGRIRIWFGIRQIMNATDRLLLETRDMA 244
+ + H+ + +
Sbjct: 170 NGYEDFLGLLEKALRAVKEHAAARIGVAPHSLRAVPAEQ--LAALAALASE--------- 218
Query: 245 REFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHT---- 300
K +H+H+AE P E + V L L + L A V+ T
Sbjct: 219 ---KAPVHIHLAEQPKEVDDCLAAHG--RRPVELL-----LDHGHLDARWCLVHATHLTD 268
Query: 301 -EIGLLSRAGVKVSHCPASAMRML--GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEM 357
E LL R+G V CP + L G P +L A + +G+D SN R+ +++E+
Sbjct: 269 NETLLLGRSGAVVGLCP-TTEANLGDGIFPAAALLAAGGRIGIGSD---SNARIDLLEEL 324
Query: 358 ----YLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKAD 413
Y L ++ R V A A +L A GA+++ G+LEAG +AD
Sbjct: 325 RQLEYSQRLRDRARNVLA----TAGGSSARALLDAALAGGAQALGLA--TGALEAGARAD 378
Query: 414 MVVVD 418
++ +D
Sbjct: 379 LLSLD 383
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 418 |
| >gnl|CDD|238637 cd01312, Met_dep_hydrolase_D, Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 4e-19
Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 30/201 (14%)
Query: 236 LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTR----------------KVDHGTVTFL 279
L + D+A++ + H E E + + +++ K + FL
Sbjct: 164 LAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLATAIDFL 223
Query: 280 DKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML--GFAPIKEMLHADIC 337
D + L + H V+ N E +L+ G ++ CP S R+L G + E+ A I
Sbjct: 224 DMLGGLGTRVSFVHCVYANLEEAEILASRGASIALCPRSN-RLLNGGKLDVSELKKAGIP 282
Query: 338 VSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSV 397
VSLGTDG SN +S++DE+ ++ D L +E +L MAT+ GA+++
Sbjct: 283 VSLGTDGLSSNISLSLLDELRALLDLHPEE--------DLLELASE-LLLMATLGGARAL 333
Query: 398 LWDNDIGSLEAGKKADMVVVD 418
+N G +EAGK+AD V +
Sbjct: 334 GLNN--GEIEAGKRADFAVFE 352
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 381 |
| >gnl|CDD|236419 PRK09228, PRK09228, guanine deaminase; Provisional | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 2e-18
Identities = 100/421 (23%), Positives = 167/421 (39%), Gaps = 66/421 (15%)
Query: 36 RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQ---- 91
R +G + V RI A G A++ Q A ++ D + +++LPGF++TH+H Q
Sbjct: 27 RYIEDGLLLVEDGRIVAAGPYAELRAQLPADA-EVTDYRGKLILPGFIDTHIHYPQTDMI 85
Query: 92 -QLAKGIADDVDLMTWLHDRIWPYESNMTEED--SYISTLLCGIELIHSGVTC---FAEA 145
+ L+ WL+ +P E + ++ EL+ +G T F
Sbjct: 86 ASYGEQ------LLDWLNTYTFPEERRFADPAYAREVAEFFLD-ELLRNGTTTALVFGTV 138
Query: 146 GGQHVSEMAKAVELLGLRACLVQSTMD--CGEGLPASWAVRTTDDCIQPDSSISFNFVSS 203
Q V + +A E +R + MD +GL +S
Sbjct: 139 HPQSVDALFEAAEARNMRMIAGKVLMDRNAPDGL-----------RDTAESGY------D 181
Query: 204 SQKELYAKHHHAADGRIRIWFGI--RQIMNATDRLLLETRDMAREFK-TGIHMHVAEIPY 260
K L + H G+ R+ + I R +T L +ARE I H++E
Sbjct: 182 DSKALIERWH----GKGRLLYAITPRFAPTSTPEQLEAAGALAREHPDVWIQTHLSENLD 237
Query: 261 ENQVVMDTRKVDHGTVTFLD---KIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPA 317
E + +++ +LD + L + AH + + E L+ G ++ CP
Sbjct: 238 E---IAWVKELFPEARDYLDVYERYGLLGPRAVFAHCIHLEDRERRRLAETGAAIAFCPT 294
Query: 318 SAMRML--GFAPIKEMLHADICVSLGTD-GAPSNNRMSIVDEMYLASLINKGREVFANGT 374
S + L G +K A + V LGTD G S++ M A + + +
Sbjct: 295 SNL-FLGSGLFDLKRADAAGVRVGLGTDVGG--GTSFSMLQTMNEAYKVQQLQGY----- 346
Query: 375 TDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWP-MVPVHDRITS 433
L +AT+ GA+++ D+ IG+L GK+AD VV+DP + P + R S
Sbjct: 347 ----RLSPFQAFYLATLGGARALGLDDRIGNLAPGKEADFVVLDPAATPLLALRTARAES 402
Query: 434 L 434
L
Sbjct: 403 L 403
|
Length = 433 |
| >gnl|CDD|216825 pfam01979, Amidohydro_1, Amidohydrolase family | Back alignment and domain information |
|---|
Score = 83.5 bits (206), Expect = 1e-17
Identities = 76/374 (20%), Positives = 120/374 (32%), Gaps = 99/374 (26%)
Query: 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIH 136
I+LPG ++ HVH + EDSY + L ++
Sbjct: 1 IVLPGLIDAHVH------------------------LESPLLRGEDSYEAILTGAKAMLR 36
Query: 137 SGVTCFAEAGGQHVSEMAKAVELLGL--RACLVQSTMDC---GEGLPASWAVRTTDDCIQ 191
SG T + + + E++ A ++ ++ G + D
Sbjct: 37 SGTTTVLDTPTSANTSIPLRKEIMEGLAAAPKLEPNVELLLKGSVGGRAELGEVVIDGAG 96
Query: 192 PDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFK--- 248
++ + + + A + + L ++A E +
Sbjct: 97 EEAKAGADLIKVIED---GGKTAKAIDGVLPALAPHDPPTVSHEGLKNEVELAEETEEAE 153
Query: 249 ---TGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLL 305
+H+H AE E L L AH + ++ I LL
Sbjct: 154 KLGLLVHIHAAEASGE-------------------VNAILGGVDLLAHCLHLDDEAIELL 194
Query: 306 SRAGVKVSHCPASAMRML---------------------GFAPIKEMLHADICVSLGTDG 344
AG ++HCP S +L G A + + V LGTDG
Sbjct: 195 KEAGSGIAHCPLSNESILHRGGRFSLMSGDAQGIGELGSGGARLARLADKGGVVGLGTDG 254
Query: 345 APSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIG 404
A N + DP L LRMATIN AK++ D+ +G
Sbjct: 255 AGLNGKDFY---------------------LDPDGLSPIEALRMATINPAKALGLDDRVG 293
Query: 405 SLEAGKKADMVVVD 418
S+E GK AD+VVVD
Sbjct: 294 SIEVGKDADLVVVD 307
|
This family of enzymes are a a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 307 |
| >gnl|CDD|238617 cd01292, metallo-dependent_hydrolases, Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 78.1 bits (192), Expect = 4e-16
Identities = 67/320 (20%), Positives = 107/320 (33%), Gaps = 52/320 (16%)
Query: 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTC 141
F++THVH D L + ++ ED Y TL L+ GVT
Sbjct: 1 FIDTHVH---------LDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTT 51
Query: 142 FAEAGGQHVSEMAKAVELLGLRACLVQSTMD--CGEGLPASWAVRTTDDCIQPDSSISFN 199
+ G KA A + + G G+P A D
Sbjct: 52 VVDMGSTPPPTTTKAAIEAVAEAARASAGIRVVLGLGIPGVPAAVDEDA----------- 100
Query: 200 FVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP 259
+ + L A G +++ G +D L + AR+ + +H E+P
Sbjct: 101 -EALLLELLRRGLELGAVG-LKL-AGPYTATGLSDESLRRVLEEARKLGLPVVIHAGELP 157
Query: 260 YENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASA 319
+ L + L ++ H ++ + LL AGV + CP S
Sbjct: 158 -----------DPTRALEDLVALLRLGGRVVIGHVSHLDPELLELLKEAGVSLEVCPLSN 206
Query: 320 MR----MLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTT 375
G ++ +L I V+LGTDG P ++ + L + +
Sbjct: 207 YLLGRDGEGAEALRRLLELGIRVTLGTDGPPHPLGTDLLALLRLLLKVLR---------- 256
Query: 376 DPAALPAETVLRMATINGAK 395
L E LR+ATIN A+
Sbjct: 257 --LGLSLEEALRLATINPAR 274
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others. Length = 275 |
| >gnl|CDD|224149 COG1228, HutI, Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 8e-16
Identities = 87/477 (18%), Positives = 156/477 (32%), Gaps = 105/477 (22%)
Query: 17 SSSTMILHNAVIVTMDKE----SRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIID 72
++ ++ + A++ T+ + +G V + +I A+G + ++ID
Sbjct: 1 TALDLLANIAMLATLAGRGLPGLGIIEDGAVLIEDGKIVAVGPEEIDIPA----GAEVID 56
Query: 73 LQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTL--LC 130
+ + + PG ++ H H G SY L
Sbjct: 57 AKGKTVTPGLIDAHTHL------GFGGSR----------GGEFELREAGASYTEILAAGG 100
Query: 131 GIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCI 190
GI + G T + G KA L L+ GE T+
Sbjct: 101 GILPLDRGFTTARDGGL-------KATALPRLKRAGSAGVTT-GERKSGYGLDLETEGGH 152
Query: 191 QPDSSISFNFVSSSQKELYAKHHHAADG--------RIRIWFGIRQIMNA---------- 232
++ + S+ AA G R G R ++
Sbjct: 153 LRAAA----GLKESRPVAVGSTPLAAHGVPEERKATREAYVAGARLLIKIVATGGLASFV 208
Query: 233 ---------TDRLLLETRDMAREFKTGIHMHVAEIP-YENQVVMDTRKVDHGTVTFLDKI 282
+ + A + + H + + + + +HGT LD
Sbjct: 209 DAFCEGGQFSPEEIRAVLAAALKAGIPVKAHAHGADGIKLAIRLGAKSAEHGT--LLDH- 265
Query: 283 EFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHADICVSLGT 342
E LL+ LL R ++ L + P ++++ A + V++GT
Sbjct: 266 ETAA--LLAEKGAGTPVPV--LLPRTKFELRE--------LDYKPARKLIDAGVKVAIGT 313
Query: 343 DGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDND 402
D P + S+ EM LA + + E L+ ATIN AK++ +
Sbjct: 314 DHNPGTSHGSLALEMALAVRLG---------------MTPEEALKAATINAAKALGLADK 358
Query: 403 IGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKI 459
+GSLE GK AD+VV D D + + Y + V +V+ +G+ V +
Sbjct: 359 VGSLEPGKDADLVVWDG---------DPLADIPYFLGLNKVEAVIKDGKVVYERGSY 406
|
Length = 406 |
| >gnl|CDD|181419 PRK08418, PRK08418, chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 2e-15
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 14/137 (10%)
Query: 284 FLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLG--FAPIKEMLHADICVSLG 341
F L H V+ + E+ + ++HCP S R+L +++ A I S+
Sbjct: 251 FKGLRTLFTHCVYASEEELEKIKSKNASITHCPFSN-RLLSNKALDLEKAKKAGINYSIA 309
Query: 342 TDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDN 401
TDG SN +S++DE+ A+L + L A+ +L AT GAK++ +N
Sbjct: 310 TDGLSSNISLSLLDELR-AAL-------LTHANMPLLEL-AKILLLSATRYGAKALGLNN 360
Query: 402 DIGSLEAGKKADMVVVD 418
G ++ GK AD+ V +
Sbjct: 361 --GEIKEGKDADLSVFE 375
|
Length = 408 |
| >gnl|CDD|233688 TIGR02022, hutF, formiminoglutamate deiminase | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 1e-10
Identities = 47/220 (21%), Positives = 84/220 (38%), Gaps = 31/220 (14%)
Query: 251 IHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLL------SAHTVWVNHTEIGL 304
+H+HVAE E D G +E+L ++ H + E L
Sbjct: 230 VHIHVAEQQKEV----DDCLAWSG----RRPVEWLLDHGPVDARWCLVHATHLTDEETKL 281
Query: 305 LSRAGVKVSHCPASAMRML--GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEM----Y 358
L+++G CP + L G P + A +G+D S+ + + +E+ Y
Sbjct: 282 LAKSGAVAGLCPTTE-ANLGDGIFPAVDFAAAGGRFGIGSD---SHVLIDVAEELRQLEY 337
Query: 359 LASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVD 418
L ++ R V A G P + A + GA+++ G L AG +AD + +D
Sbjct: 338 GQRLRDRARNVLAAG---PGPSVGRALYDAALLGGAQALGRA--TGGLRAGARADFLTLD 392
Query: 419 PFSWPMVPVHDR--ITSLVYCMRTENVVSVMCNGQWVMKN 456
+ + ++ V V G+WV+++
Sbjct: 393 GDHPRLAGALGDSLLDRWLFAGGKAAVRDVWVGGRWVVRD 432
|
In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate [Energy metabolism, Amino acids and amines]. Length = 454 |
| >gnl|CDD|238625 cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 4e-10
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 321 RMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMY-LASLIN-KGREVFANGTTDPA 378
R P + +L A + V+LG+D AP ++ D + + + + K G +
Sbjct: 388 RAKRSYPFRSLLDAGVPVALGSD-AP----VAPPDPLLGIWAAVTRKTPGGGVLGNPE-E 441
Query: 379 ALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVV 416
L E LR TI A ++ +++ GSLE GK AD VV
Sbjct: 442 RLSLEEALRAYTIGAAYAIGEEDEKGSLEPGKLADFVV 479
|
YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling. Length = 479 |
| >gnl|CDD|221936 pfam13147, Amidohydro_4, Amidohydrolase | Back alignment and domain information |
|---|
Score = 59.9 bits (144), Expect = 6e-10
Identities = 64/354 (18%), Positives = 116/354 (32%), Gaps = 60/354 (16%)
Query: 72 DLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDR------IWPYESNMTEEDSYI 125
D + +++LPG V+ HVH + + E +
Sbjct: 1 DAKGRLVLPGLVDLHVHGRPLDKSEDGGPYRAEAEAGLAALAGAGVTSALLDGGWEPELL 60
Query: 126 STLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRT 185
+ LL + + A + + + + +E G+ L S +D +
Sbjct: 61 TRLLVRVLVDGLIGLGNLGATLEALKRLVELLEAEGVALPL-ASVLDGPGLEALLREAKK 119
Query: 186 TDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMN-ATDRLLLETRDMA 244
V H A G + G+ + A + E +A
Sbjct: 120 AGL---------ILLVG---------HAPADLGDGAVEKGLDALFLLALGHEVAEDLHLA 161
Query: 245 REFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGL 304
G + + I ++++ H V +
Sbjct: 162 EILDPGAGLGLHVIAAAADLLLEGLVAAHAG----------------GLAVVPLELLLRD 205
Query: 305 LSRAGVKVSHCPASAMRMLGFAPIKEMLHADICVSLGTDGAPSNNRMS---IVDEMYLAS 361
+ AGV P +R ++E+L A + V+LG+D AP + + ++LA+
Sbjct: 206 AAAAGVAFKVLPPLRLRERDREALRELLAAGVPVALGSDHAPDSPAGPGDLLEAALFLAA 265
Query: 362 LINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMV 415
L A L E LR+AT+N A+ + +D+G LE GK+AD+V
Sbjct: 266 L---------------AGLTPEEALRLATLNPARLLGLGDDLGRLEVGKRADLV 304
|
This family of enzymes are a part of a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 304 |
| >gnl|CDD|236420 PRK09229, PRK09229, N-formimino-L-glutamate deiminase; Validated | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 8e-10
Identities = 51/218 (23%), Positives = 83/218 (38%), Gaps = 33/218 (15%)
Query: 251 IHMHVAEIPYENQVVMDTRKVDHGT--VTFLDKIEFLQNNLLSAHTVWVNHT-----EIG 303
+H+H+AE E + G V +L L + + A V+ T E
Sbjct: 231 VHIHIAEQTKEVDDCLAW----SGARPVEWL-----LDHAPVDARWCLVHATHLTDAETA 281
Query: 304 LLSRAGVKVSHCPASAMRML--GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEM---- 357
L+R+G CP + L G P + L A +G+D S+ + +V+E+
Sbjct: 282 RLARSGAVAGLCPTTE-ANLGDGIFPAVDYLAAGGRFGIGSD---SHVSIDLVEELRLLE 337
Query: 358 YLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVV 417
Y L ++ R V A + A GA+++ IG L G +AD+VV+
Sbjct: 338 YGQRLRDRRRNVLA---AAAQPSVGRRLFDAALAGGAQALGRA--IGGLAVGARADLVVL 392
Query: 418 DPFSWPM--VPVHDRITSLVYCMRTENVVSVMCNGQWV 453
D + + V+ V V G+WV
Sbjct: 393 DLDHPALAGREGDALLDRWVFAGGDAAVRDVWVAGRWV 430
|
Length = 456 |
| >gnl|CDD|238621 cd01296, Imidazolone-5PH, Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 29/153 (18%)
Query: 302 IGLLSRAGVKVSHCPASA-MRMLGFAPIKEMLHADICVSLGTD---GAPSNNRMSIVDEM 357
I L+ AG P +A + P ++++ A + V+LGTD G+ + M +V M
Sbjct: 244 IAALAEAGTVAVLLPGTAFSLRETYPPARKLIDAGVPVALGTDFNPGSSPTSSMPLV--M 301
Query: 358 YLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVV 417
+LA + + + E L ATIN A ++ +GSLE GK+AD+V++
Sbjct: 302 HLACRLMR--------------MTPEEALTAATINAAAALGLGETVGSLEVGKQADLVIL 347
Query: 418 DPFSWPMVPVHDRITSLVYCMRTENVVSVMCNG 450
D S+ L Y V V+ NG
Sbjct: 348 DAPSY---------EHLAYRFGVNLVEYVIKNG 371
|
In bacteria, the enzyme is part of histidine utilization (hut) operon. Length = 371 |
| >gnl|CDD|238630 cd01305, archeal_chlorohydrolases, Predicted chlorohydrolases | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 63/325 (19%), Positives = 110/325 (33%), Gaps = 69/325 (21%)
Query: 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRI--WPYESNMTEEDSYISTLL--CGI 132
IL+P VN H H K + D + L D + P D LL
Sbjct: 1 ILIPALVNAHTHLGDSAIKEVGDGLPL-----DDLVAPP--------DGLKHRLLAQADD 47
Query: 133 ELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGE-GLPASWAVRTTDDCIQ 191
+ + + G+ A D E G+ +R +
Sbjct: 48 RELAEAMRKVLRDMRET-----------GIGAFA-----DFREGGVEGIELLRRALGKL- 90
Query: 192 PDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGI 251
+ F + E + + + G+ + +A D L + ++ R
Sbjct: 91 ---PVPFEVILGRPTEPDDP-----EILLEVADGL-GLSSANDVDLEDILELLRRRGKLF 141
Query: 252 HMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVK 311
+H +E + +T +++ L+ +LL H + ++ L+ GV
Sbjct: 142 AIHASE------------TRESVGMTDIERALDLEPDLL-VHGTHLTDEDLELVRENGVP 188
Query: 312 VSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVF 370
V CP S + +G P+ E+L I V LGTD N + EM + ++ +
Sbjct: 189 VVLCPRSNLYFGVGIPPVAELLKLGIKVLLGTDNVMVNE-PDMWAEMEFLAKYSRLQ--- 244
Query: 371 ANGTTDPAALPAETVLRMATINGAK 395
L +LRMAT+N A+
Sbjct: 245 -------GYLSPLEILRMATVNAAE 262
|
These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases. Length = 263 |
| >gnl|CDD|224490 COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 4e-09
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 321 RMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMY-LASLIN-KGREVFANGTTDPA 378
R P + +L A + ++ G+D AP + D + + + K G
Sbjct: 413 RASRSYPFRSLLKAGVPLAGGSD-AP----VEPYDPWLGIYAAVTRKTPGGRVLGPE--E 465
Query: 379 ALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVD 418
L E LR T GA + + + GSLE GK AD V+D
Sbjct: 466 RLTREEALRAYTEGGAYASGAEGEKGSLEPGKLADFAVLD 505
|
Length = 535 |
| >gnl|CDD|224490 COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 6e-09
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQI 77
++ +ILHN I TMD+ V + RI A+G A++ A ++IDL+ +
Sbjct: 4 AADLILHNGRIYTMDEARPTAE--AVAIKDGRIVAVGSDAELKALAGP-ATEVIDLKGKF 60
Query: 78 LLPGFVNTHVH 88
+LPGFV+ H+H
Sbjct: 61 VLPGFVDAHLH 71
|
Length = 535 |
| >gnl|CDD|235969 PRK07213, PRK07213, chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 51/193 (26%), Positives = 81/193 (41%), Gaps = 31/193 (16%)
Query: 233 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSA 292
+D L + K +H AE ++ V K + L + F + ++
Sbjct: 177 SDEELKFICKECKREKKIFSIHAAE--HKGSVEYSLEKYGMTEIERLINLGFKPDFIV-- 232
Query: 293 HTVWVNHTEIGLLSRAGVKVSHCP-ASAMRMLGFAPIKEMLHADICVSLGTDGAPSNNRM 351
H ++ ++ LL + V CP A+A +G P+ EML I + +GTD N M
Sbjct: 233 HATHPSNDDLELLKENNIPVVVCPRANASFNVGLPPLNEMLEKGILLGIGTD-----NFM 287
Query: 352 ----SIVDEM-YLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSL 406
SI EM ++ L + + + +L+MATINGAK + N G +
Sbjct: 288 ANSPSIFREMEFIYKLYH---------------IEPKEILKMATINGAKILGLINV-GLI 331
Query: 407 EAGKKADMVVVDP 419
E G KAD + P
Sbjct: 332 EEGFKADFTFIKP 344
|
Length = 375 |
| >gnl|CDD|236478 PRK09356, PRK09356, imidazolonepropionase; Validated | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 4e-08
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 30/131 (22%)
Query: 325 FAPIKEMLHADICVSLGTD---G-APSNNRMSIVDEMYLASLINKGREVFANGTTDPAAL 380
+ P + + A + V+L TD G +P+ + + + M +A + + L
Sbjct: 298 YPPARLLRDAGVPVALATDFNPGSSPTES-LLLA--MNMACTLFR--------------L 340
Query: 381 PAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRT 440
E L TIN A+++ + GSLE GKKAD+V+ W L Y
Sbjct: 341 TPEEALAAVTINAARALGRQDTHGSLEVGKKADLVI-----WDA----PSPAELPYHFGV 391
Query: 441 ENVVSVMCNGQ 451
V +V+ NG+
Sbjct: 392 NPVETVVKNGE 402
|
Length = 406 |
| >gnl|CDD|236478 PRK09356, PRK09356, imidazolonepropionase; Validated | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 5e-08
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 18 SSTMILHNAVIVTMDKESR----VFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDL 73
+ ++ NA + TMD + +G + + +I +G AD+ + A ++ID
Sbjct: 2 MADLLWTNAQLATMDGGGMGELGIIEDGAIAIEDGKIVWVGPEADLP---AAYAAEVIDA 58
Query: 74 QSQILLPGFVNTHVH 88
+++ PG ++ H H
Sbjct: 59 GGKLVTPGLIDCHTH 73
|
Length = 406 |
| >gnl|CDD|233321 TIGR01224, hutI, imidazolonepropionase | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 293 HTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNN-- 349
H + I L+ AG P + + + P ++++ + V+L TD P ++
Sbjct: 239 HLEHASDAGIKALAEAGTVAVLLPGTTFYLRETYPPARQLIDYGVPVALATDLNPGSSPT 298
Query: 350 -RMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEA 408
M ++ M LA + K + E L AT+N A ++ + G+LEA
Sbjct: 299 LSMQLI--MSLACRLMK--------------MTPEEALHAATVNAAYALGLGEERGTLEA 342
Query: 409 GKKADMVVVDPFSWPMVPVH 428
G+ AD+V++ S+ +P H
Sbjct: 343 GRDADLVILSAPSYAEIPYH 362
|
This enzyme catalyzes the third step in histidine degradation [Energy metabolism, Amino acids and amines]. Length = 377 |
| >gnl|CDD|238634 cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 5e-07
Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 22/118 (18%)
Query: 329 KEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTD------------ 376
E+ I V G + D + + + K V ++D
Sbjct: 232 DELAKHGIPVIYGPTLTLPKKVEEVNDAIDTNAYLLKKGGVAFAISSDHPVLNIRNLNLE 291
Query: 377 -----PAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVD-----PFSWPM 424
L E L+ TIN AK + ++ +GSLE GK AD+VV + P S P
Sbjct: 292 AAKAVKYGLSYEEALKAITINPAKILGIEDRVGSLEPGKDADLVVWNGDPLEPTSKPE 349
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 359 |
| >gnl|CDD|222250 pfam13594, Amidohydro_5, Amidohydrolase | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-06
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100
+ + +I AIG ++ID + + +LPG ++ HVH ++ + +
Sbjct: 1 ILIEDGKIAAIGGDDLP-----DAEAEVIDAEGKYVLPGLIDMHVHLGEEPGRETLET 53
|
This family of enzymes are a part of a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 66 |
| >gnl|CDD|238434 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 25/145 (17%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ NA I+T +G V V +I AIG ++ + AD+IIDL+ Q L+P
Sbjct: 1 LIIKNARILTPGGL----EDGAVLVEDGKIVAIGPEDEL-----EEADEIIDLKGQYLVP 51
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEE--DSYISTLL-CGIELIHS 137
GF++ H+H G D M + + + + S++ T + E I
Sbjct: 52 GFIDIHIH-------GGG-GADFMDGTAEALKTIAEALAKHGTTSFLPTTVTAPPEEIAK 103
Query: 138 GVTCFAEAGGQHVSEMAKAVELLGL 162
+ AEA + E+LG+
Sbjct: 104 ALAAIAEAIAEGQG-----AEILGI 123
|
This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling. Length = 374 |
| >gnl|CDD|238624 cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 19/38 (50%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 381 PAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVD 418
PAE LR AT N A+ + +++G +EAGK AD++VVD
Sbjct: 296 PAE-ALRAATANAAELLGLSDELGVIEAGKLADLLVVD 332
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 342 |
| >gnl|CDD|238625 cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 42 GVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88
V V RI A+G A+ A ++IDL+ + +LPGF+++H H
Sbjct: 1 AVAVRDGRIVAVGSDAEAKA-LKGPATEVIDLKGKTVLPGFIDSHSH 46
|
YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling. Length = 479 |
| >gnl|CDD|219672 pfam07969, Amidohydro_3, Amidohydrolase family | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 5e-05
Identities = 36/182 (19%), Positives = 60/182 (32%), Gaps = 20/182 (10%)
Query: 244 AREFKTGIHMHV-------AEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVW 296
A + +H A + V+ D ++ H V D I+ L
Sbjct: 222 AHAAGLQVRVHASGDAAIDAVLNAYEAVLADLGRLIHAGVATTDTIDRAAE-LGLRADTQ 280
Query: 297 VNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHADICVSLGTD--GAPSNNRMSIV 354
+ R G PIK +L+A + V+LG+D A + I
Sbjct: 281 PHFLAYDGYWDRS------RLGPERARGSLPIKLLLNAGVKVALGSDAPVATYDPWSGI- 333
Query: 355 DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADM 414
A + + L E L + T A ++ ++ G+L GK AD+
Sbjct: 334 ---GAAVMRRTAEMLEGRVLKPDERLSLEEALALYTRGPAYALGLEDRKGTLAVGKDADL 390
Query: 415 VV 416
V+
Sbjct: 391 VI 392
|
Length = 392 |
| >gnl|CDD|181419 PRK08418, PRK08418, chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 6e-05
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 28 IVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHV 87
I T D+ + +G V V D+I IG ++ +++ +I ++ +LLP F+N H
Sbjct: 9 IFTCDENFEILEDGAV-VFDDKILEIGDYENLKKKYPNA--KIQFFKNSVLLPAFINPHT 65
Query: 88 H 88
H
Sbjct: 66 H 66
|
Length = 408 |
| >gnl|CDD|182623 PRK10657, PRK10657, isoaspartyl dipeptidase; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 7e-05
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 21/81 (25%)
Query: 380 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMR 439
LP E L+ T N A+ L N G + GK AD++V+D
Sbjct: 323 LPLEDALKPLTSNVAR-FLKLNGKGEILPGKDADLLVLDD-------------------- 361
Query: 440 TENVVSVMCNGQWVMKNKKIL 460
+ V+ G+ ++K+ K L
Sbjct: 362 DLRIEQVIAKGKLMVKDGKAL 382
|
Length = 388 |
| >gnl|CDD|223122 COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 8e-05
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILL 79
+++ NA +V ++ + + +I AIG++ + +IID + ++L
Sbjct: 2 DLLIKNARVVDPGEDEV----ADILIKDGKIAAIGKNLEP-----TSGAEIIDAKGLLVL 52
Query: 80 PGFVNTHVH 88
PG V+ HVH
Sbjct: 53 PGLVDLHVH 61
|
Length = 430 |
| >gnl|CDD|224733 COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 9e-05
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 20/74 (27%)
Query: 380 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMR 439
+ +RMA++N AK++ D+ +GS++ GK AD+VV+D
Sbjct: 325 ISLAEAVRMASLNPAKALGLDDRLGSIKPGKDADLVVLDDDL------------------ 366
Query: 440 TENVVSVMCNGQWV 453
NV + NG+ V
Sbjct: 367 --NVKATWINGEKV 378
|
Length = 380 |
| >gnl|CDD|224733 COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILL 79
L N I T V G V + +I+A+ + +IIDL+ +L+
Sbjct: 1 MYALKNGRIFT---GHGVLDGGAVVIEDGKIEAVVPAELP------ADAEIIDLKGALLV 51
Query: 80 PGFVNTHVH 88
PGF++ H+H
Sbjct: 52 PGFIDLHIH 60
|
Length = 380 |
| >gnl|CDD|238434 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 380 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDP 419
P E +RMA++N AK + D+ GSL+ GK AD+VV+D
Sbjct: 324 CPLEEAVRMASLNPAKLLGLDDRKGSLKPGKDADLVVLDD 363
|
This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling. Length = 374 |
| >gnl|CDD|236479 PRK09357, pyrC, dihydroorotase; Validated | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88
V + +I AIG++ + ++ID ++ PG V+ HVH
Sbjct: 22 VLIDDGKIAAIGENIEAE------GAEVIDATGLVVAPGLVDLHVH 61
|
Length = 423 |
| >gnl|CDD|223933 COG1001, AdeC, Adenine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 35/159 (22%)
Query: 307 RAGVKVSHCPASAMRML-GFAP-IKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLIN 364
R G+K+ SA + L P I E+ + L TD ++ +++E +L L+
Sbjct: 242 RLGMKIMIREGSAAKDLAALLPAITELGSRRVM--LCTDDRHPDD---LLEEGHLDRLV- 295
Query: 365 KGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPM 424
R G + +MATIN A+ +D+G + G++AD+V+++
Sbjct: 296 --RRAIEEG------VDPLDAYQMATINPAE-HYGLDDLGLIAPGRRADLVILED----- 341
Query: 425 VPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLM 463
+R V SV+ G+ V ++ K L+
Sbjct: 342 -------------LRNFKVTSVLIKGRVVAEDGKALIKD 367
|
Length = 584 |
| >gnl|CDD|184033 PRK13404, PRK13404, dihydropyrimidinase; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 6e-04
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPG 81
++ +VT + F+ + + RI A+G+ + ID +++LPG
Sbjct: 7 VIRGGTVVTA---TDTFQ-ADIGIRGGRIAALGEGLG-------PGAREIDATGRLVLPG 55
Query: 82 FVNTHVHTSQQLAKGI--ADD 100
V++H H Q GI ADD
Sbjct: 56 GVDSHCHIDQPSGDGIMMADD 76
|
Length = 477 |
| >gnl|CDD|181716 PRK09236, PRK09236, dihydroorotase; Reviewed | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 6e-04
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQI 77
+I NA IV E ++F G V + RI I S AD +ID +
Sbjct: 2 KRILI-KNARIVN---EGKIFE-GDVLIENGRIAKIASSISAKS-----ADTVIDAAGRY 51
Query: 78 LLPGFVNTHVH 88
LLPG ++ VH
Sbjct: 52 LLPGMIDDQVH 62
|
Length = 444 |
| >gnl|CDD|237604 PRK14085, PRK14085, imidazolonepropionase; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 8e-04
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 18 SSTMILHNAVIVTMDKE-----SRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIID 72
ST+I + +VT D E V R+ V V R+ +G +AD + AD+ +D
Sbjct: 1 MSTLITNIGELVTNDPELGEGPLGVLRDAAVVVEGGRVAWVGPAAD-----APAADERVD 55
Query: 73 LQSQILLPGFVNTHVH 88
+ +LPGFV++H H
Sbjct: 56 AGGRAVLPGFVDSHSH 71
|
Length = 382 |
| >gnl|CDD|238621 cd01296, Imidazolone-5PH, Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88
+ + RI A+G +A L A + ID + + PG V+ H H
Sbjct: 1 IAIRDGRIAAVGPAAS-LPAPGPAAAEEIDAGGRAVTPGLVDCHTH 45
|
In bacteria, the enzyme is part of histidine utilization (hut) operon. Length = 371 |
| >gnl|CDD|182623 PRK10657, PRK10657, isoaspartyl dipeptidase; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.001
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88
+ + +I AI + +I + ++ID +IL+PGF++ HVH
Sbjct: 21 ILIAGGKIIAIADNINIPDIVPDI--EVIDASGKILVPGFIDQHVH 64
|
Length = 388 |
| >gnl|CDD|237967 PRK15446, PRK15446, phosphonate metabolism protein PhnM; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.001
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 11/69 (15%)
Query: 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQI 77
MIL NA +V V +G + + RI AI A S + ID +
Sbjct: 1 MMEMILSNARLVL---PDEVV-DGSLLIEDGRIAAIDPGA------SALP-GAIDAEGDY 49
Query: 78 LLPGFVNTH 86
LLPG V+ H
Sbjct: 50 LLPGLVDLH 58
|
Length = 383 |
| >gnl|CDD|180337 PRK05985, PRK05985, cytosine deaminase; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 13/61 (21%)
Query: 36 RVFRN----GG----VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHV 87
+FRN GG + + RI AIG + + ++ D + LPG V+ H+
Sbjct: 4 LLFRNVRPAGGAAVDILIRDGRIAAIGPALA-----APPGAEVEDGGGALALPGLVDGHI 58
Query: 88 H 88
H
Sbjct: 59 H 59
|
Length = 391 |
| >gnl|CDD|238620 cd01295, AdeC, Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 15/113 (13%)
Query: 307 RAGVKVSHCPASAMRMLGFAPIKEMLHADI-CVSLGTDGAPSNNRMSIVDEMYLASLINK 365
R G+ V S + L + + + TD ++ ++ E +L ++
Sbjct: 174 RLGMYVMLREGSIAKNLEAL-LPAITEKNFRRFMFCTDDVHPDD---LLSEGHLDYIV-- 227
Query: 366 GREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVD 418
R G +P E ++MATIN A+ +D+G++ G+ AD+V++D
Sbjct: 228 -RRAIEAG------IPPEDAIQMATINPAE-CYGLHDLGAIAPGRIADIVILD 272
|
This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea. Length = 422 |
| >gnl|CDD|163175 TIGR03178, allantoinase, allantoinase | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ ++ + E V V +I AIG DIL A +IID ++ P
Sbjct: 2 LIIRGGRVILPNGEREA----DVGVKGGKIAAIGP--DILGP----AAKIIDAGGLVVFP 51
Query: 81 GFVNTHVHTSQ 91
G V+THVH ++
Sbjct: 52 GVVDTHVHINE 62
|
This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases. Length = 443 |
| >gnl|CDD|238622 cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 376 DPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLV 435
+ L E +R T A V D G + G +AD+VV DP + + DR T
Sbjct: 331 ERKLLSLEEAVRKMTGLPA-RVFGLADRGRIAPGYRADIVVFDPDT-----LADRATFTR 384
Query: 436 YCMRTENVVSVMCNGQWVMKN 456
E + +V+ NG V+++
Sbjct: 385 PNQPAEGIEAVLVNGVPVVRD 405
|
Length = 415 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 478 | |||
| PRK15493 | 435 | 5-methylthioadenosine/S-adenosylhomocysteine deami | 100.0 | |
| PRK06687 | 419 | chlorohydrolase; Validated | 100.0 | |
| PRK07228 | 445 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| PRK09045 | 443 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| PRK07203 | 442 | putative chlorohydrolase/aminohydrolase; Validated | 100.0 | |
| TIGR03314 | 441 | Se_ssnA putative selenium metabolism protein SsnA. | 100.0 | |
| PRK08204 | 449 | hypothetical protein; Provisional | 100.0 | |
| PRK12393 | 457 | amidohydrolase; Provisional | 100.0 | |
| PRK06038 | 430 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| PRK06380 | 418 | metal-dependent hydrolase; Provisional | 100.0 | |
| PRK08203 | 451 | hydroxydechloroatrazine ethylaminohydrolase; Revie | 100.0 | |
| PRK08393 | 424 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| PRK06151 | 488 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| PRK09228 | 433 | guanine deaminase; Provisional | 100.0 | |
| cd01298 | 411 | ATZ_TRZ_like TRZ/ATZ family contains enzymes from | 100.0 | |
| cd01303 | 429 | GDEase Guanine deaminase (GDEase). Guanine deamina | 100.0 | |
| PRK09229 | 456 | N-formimino-L-glutamate deiminase; Validated | 100.0 | |
| TIGR02022 | 455 | hutF formiminoglutamate deiminase. In some species | 100.0 | |
| PRK08418 | 408 | chlorohydrolase; Provisional | 100.0 | |
| TIGR02967 | 401 | guan_deamin guanine deaminase. This model describe | 100.0 | |
| cd01313 | 418 | Met_dep_hydrolase_E Metallo-dependent hydrolases, | 100.0 | |
| COG0402 | 421 | SsnA Cytosine deaminase and related metal-dependen | 100.0 | |
| cd01312 | 381 | Met_dep_hydrolase_D Metallo-dependent hydrolases, | 100.0 | |
| KOG3968 | 439 | consensus Atrazine chlorohydrolase/guanine deamina | 100.0 | |
| PRK07213 | 375 | chlorohydrolase; Provisional | 100.0 | |
| PRK09356 | 406 | imidazolonepropionase; Validated | 100.0 | |
| COG1574 | 535 | Predicted metal-dependent hydrolase with the TIM-b | 100.0 | |
| cd01293 | 398 | Bact_CD Bacterial cytosine deaminase and related m | 100.0 | |
| PRK09230 | 426 | cytosine deaminase; Provisional | 100.0 | |
| PLN02942 | 486 | dihydropyrimidinase | 100.0 | |
| TIGR01224 | 377 | hutI imidazolonepropionase. This enzyme catalyzes | 100.0 | |
| cd01314 | 447 | D-HYD D-hydantoinases (D-HYD) also called dihydrop | 100.0 | |
| PRK07572 | 426 | cytosine deaminase; Validated | 100.0 | |
| PRK14085 | 382 | imidazolonepropionase; Provisional | 100.0 | |
| TIGR02033 | 454 | D-hydantoinase D-hydantoinase. This model represen | 100.0 | |
| PRK08323 | 459 | phenylhydantoinase; Validated | 100.0 | |
| PRK05985 | 391 | cytosine deaminase; Provisional | 100.0 | |
| PRK12394 | 379 | putative metallo-dependent hydrolase; Provisional | 100.0 | |
| cd01296 | 371 | Imidazolone-5PH Imidazolonepropionase/imidazolone- | 100.0 | |
| COG1228 | 406 | HutI Imidazolonepropionase and related amidohydrol | 100.0 | |
| cd01297 | 415 | D-aminoacylase D-aminoacylases (N-acyl-D-Amino aci | 100.0 | |
| PRK07583 | 438 | cytosine deaminase-like protein; Validated | 100.0 | |
| PRK10657 | 388 | isoaspartyl dipeptidase; Provisional | 100.0 | |
| TIGR01975 | 389 | isoAsp_dipep isoaspartyl dipeptidase IadA. The L-i | 100.0 | |
| PRK06846 | 410 | putative deaminase; Validated | 100.0 | |
| PRK09236 | 444 | dihydroorotase; Reviewed | 100.0 | |
| PRK06189 | 451 | allantoinase; Provisional | 100.0 | |
| PRK13309 | 572 | ureC urease subunit alpha; Reviewed | 100.0 | |
| cd01315 | 447 | L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinas | 100.0 | |
| PLN02795 | 505 | allantoinase | 100.0 | |
| PRK13404 | 477 | dihydropyrimidinase; Provisional | 100.0 | |
| PRK07575 | 438 | dihydroorotase; Provisional | 100.0 | |
| PRK15446 | 383 | phosphonate metabolism protein PhnM; Provisional | 100.0 | |
| PRK09357 | 423 | pyrC dihydroorotase; Validated | 100.0 | |
| cd01299 | 342 | Met_dep_hydrolase_A Metallo-dependent hydrolases, | 100.0 | |
| PRK09237 | 380 | dihydroorotase; Provisional | 100.0 | |
| TIGR03178 | 443 | allantoinase allantoinase. This enzyme carries out | 100.0 | |
| TIGR01792 | 567 | urease_alph urease, alpha subunit. This model desc | 100.0 | |
| PRK13207 | 568 | ureC urease subunit alpha; Reviewed | 100.0 | |
| PRK09061 | 509 | D-glutamate deacylase; Validated | 99.98 | |
| PRK13206 | 573 | ureC urease subunit alpha; Reviewed | 99.98 | |
| PRK07627 | 425 | dihydroorotase; Provisional | 99.98 | |
| PRK02382 | 443 | dihydroorotase; Provisional | 99.97 | |
| PRK13985 | 568 | ureB urease subunit beta; Provisional | 99.97 | |
| COG1820 | 380 | NagA N-acetylglucosamine-6-phosphate deacetylase [ | 99.97 | |
| KOG2584 | 522 | consensus Dihydroorotase and related enzymes [Nucl | 99.97 | |
| TIGR02318 | 376 | phosphono_phnM phosphonate metabolism protein PhnM | 99.97 | |
| cd01300 | 479 | YtcJ_like YtcJ_like metal dependent amidohydrolase | 99.97 | |
| cd01309 | 359 | Met_dep_hydrolase_C Metallo-dependent hydrolases, | 99.97 | |
| PRK13308 | 569 | ureC urease subunit alpha; Reviewed | 99.97 | |
| PLN02303 | 837 | urease | 99.97 | |
| COG0044 | 430 | PyrC Dihydroorotase and related cyclic amidohydrol | 99.97 | |
| PRK08044 | 449 | allantoinase; Provisional | 99.97 | |
| cd00375 | 567 | Urease_alpha Urease alpha-subunit; Urease is a nic | 99.97 | |
| PRK09060 | 444 | dihydroorotase; Validated | 99.97 | |
| TIGR01178 | 552 | ade adenine deaminase. The family described by thi | 99.97 | |
| PRK11170 | 382 | nagA N-acetylglucosamine-6-phosphate deacetylase; | 99.96 | |
| TIGR00221 | 380 | nagA N-acetylglucosamine-6-phosphate deacetylase. | 99.96 | |
| COG1001 | 584 | AdeC Adenine deaminase [Nucleotide transport and m | 99.96 | |
| cd01308 | 387 | Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hy | 99.96 | |
| PRK09059 | 429 | dihydroorotase; Validated | 99.96 | |
| TIGR03121 | 556 | one_C_dehyd_A formylmethanofuran dehydrogenase sub | 99.96 | |
| PRK08417 | 386 | dihydroorotase; Provisional | 99.96 | |
| cd00854 | 374 | NagA N-acetylglucosamine-6-phosphate deacetylase, | 99.96 | |
| PRK01211 | 409 | dihydroorotase; Provisional | 99.96 | |
| PRK10027 | 588 | cryptic adenine deaminase; Provisional | 99.95 | |
| COG3964 | 386 | Predicted amidohydrolase [General function predict | 99.95 | |
| PRK07369 | 418 | dihydroorotase; Provisional | 99.95 | |
| TIGR00857 | 411 | pyrC_multi dihydroorotase, multifunctional complex | 99.95 | |
| cd01305 | 263 | archeal_chlorohydrolases Predicted chlorohydrolase | 99.95 | |
| PRK04250 | 398 | dihydroorotase; Provisional | 99.95 | |
| cd01304 | 541 | FMDH_A Formylmethanofuran dehydrogenase (FMDH) sub | 99.95 | |
| cd01307 | 338 | Met_dep_hydrolase_B Metallo-dependent hydrolases, | 99.94 | |
| COG3454 | 377 | Metal-dependent hydrolase involved in phosphonate | 99.93 | |
| TIGR03583 | 365 | EF_0837 probable amidohydrolase EF_0837/AHA_3915. | 99.93 | |
| PRK00369 | 392 | pyrC dihydroorotase; Provisional | 99.92 | |
| COG3653 | 579 | N-acyl-D-aspartate/D-glutamate deacylase [Secondar | 99.92 | |
| COG1229 | 575 | FwdA Formylmethanofuran dehydrogenase subunit A [E | 99.92 | |
| PF01979 | 333 | Amidohydro_1: Amidohydrolase family; InterPro: IPR | 99.92 | |
| cd01295 | 422 | AdeC Adenine deaminase (AdeC) directly deaminates | 99.9 | |
| COG0804 | 568 | UreC Urea amidohydrolase (urease) alpha subunit [A | 99.88 | |
| cd01317 | 374 | DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; | 99.87 | |
| KOG3892 | 407 | consensus N-acetyl-glucosamine-6-phosphate deacety | 99.86 | |
| PF07969 | 404 | Amidohydro_3: Amidohydrolase family; InterPro: IPR | 99.86 | |
| cd01318 | 361 | DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; | 99.85 | |
| PRK06886 | 329 | hypothetical protein; Validated | 99.84 | |
| cd01306 | 325 | PhnM PhnM is believed to be a subunit of the membr | 99.83 | |
| cd01302 | 337 | Cyclic_amidohydrolases Cyclic amidohydrolases, inc | 99.83 | |
| PF13147 | 304 | Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2 | 99.77 | |
| cd01292 | 275 | metallo-dependent_hydrolases Superfamily of metall | 99.76 | |
| cd01320 | 325 | ADA Adenosine deaminase (ADA) is a monomeric zinc | 99.66 | |
| PRK09358 | 340 | adenosine deaminase; Provisional | 99.66 | |
| TIGR01430 | 324 | aden_deam adenosine deaminase. This family include | 99.63 | |
| cd01316 | 344 | CAD_DHOase The eukaryotic CAD protein is a trifunc | 99.63 | |
| PF13594 | 68 | Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1 | 99.53 | |
| cd01294 | 335 | DHOase Dihydroorotase (DHOase) catalyzes the rever | 99.37 | |
| cd00530 | 293 | PTE Phosphotriesterase (PTE) catalyzes the hydroly | 98.96 | |
| cd00443 | 305 | ADA_AMPD Adenosine/AMP deaminase. Adenosine deamin | 98.83 | |
| PRK05451 | 345 | dihydroorotase; Provisional | 98.76 | |
| TIGR00010 | 252 | hydrolase, TatD family. Several genomes have multi | 98.73 | |
| TIGR00856 | 341 | pyrC_dimer dihydroorotase, homodimeric type. This | 98.68 | |
| PRK09875 | 292 | putative hydrolase; Provisional | 98.67 | |
| cd01310 | 251 | TatD_DNAse TatD like proteins; E.coli TatD is a cy | 98.63 | |
| PTZ00124 | 362 | adenosine deaminase; Provisional | 98.56 | |
| PLN02599 | 364 | dihydroorotase | 98.48 | |
| cd01321 | 345 | ADGF Adenosine deaminase-related growth factors (A | 98.45 | |
| COG1816 | 345 | Add Adenosine deaminase [Nucleotide transport and | 98.41 | |
| PF00962 | 331 | A_deaminase: Adenosine/AMP deaminase immunodeficie | 98.27 | |
| PF02126 | 308 | PTE: Phosphotriesterase family; InterPro: IPR00155 | 98.24 | |
| PRK10812 | 265 | putative DNAse; Provisional | 98.12 | |
| PRK11449 | 258 | putative deoxyribonuclease YjjV; Provisional | 98.11 | |
| COG1735 | 316 | Php Predicted metal-dependent hydrolase with the T | 98.03 | |
| TIGR01431 | 479 | adm_rel adenosine deaminase-related growth factor. | 98.01 | |
| KOG1097 | 399 | consensus Adenine deaminase/adenosine deaminase [N | 97.96 | |
| COG1099 | 254 | Predicted metal-dependent hydrolases with the TIM- | 97.92 | |
| PRK10425 | 258 | DNase TatD; Provisional | 97.76 | |
| COG0084 | 256 | TatD Mg-dependent DNase [DNA replication, recombin | 97.72 | |
| PF01026 | 255 | TatD_DNase: TatD related DNase The Pfam entry find | 97.62 | |
| PF07908 | 48 | D-aminoacyl_C: D-aminoacylase, C-terminal region; | 97.42 | |
| PF00449 | 121 | Urease_alpha: Urease alpha-subunit, N-terminal dom | 97.04 | |
| PLN03055 | 602 | AMP deaminase; Provisional | 96.67 | |
| TIGR01429 | 611 | AMP_deaminase AMP deaminase. This model describes | 96.62 | |
| cd01319 | 496 | AMPD AMP deaminase (AMPD) catalyzes the hydrolytic | 96.58 | |
| cd01311 | 263 | PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) | 96.46 | |
| PLN02768 | 835 | AMP deaminase | 96.03 | |
| PTZ00310 | 1453 | AMP deaminase; Provisional | 95.69 | |
| PRK06361 | 212 | hypothetical protein; Provisional | 94.94 | |
| PTZ00310 | 1453 | AMP deaminase; Provisional | 93.73 | |
| COG2159 | 293 | Predicted metal-dependent hydrolase of the TIM-bar | 93.37 | |
| PRK00912 | 237 | ribonuclease P protein component 3; Provisional | 92.01 | |
| PF12890 | 142 | DHOase: Dihydro-orotase-like; InterPro: IPR024403 | 91.51 | |
| PF04909 | 273 | Amidohydro_2: Amidohydrolase; InterPro: IPR006992 | 88.81 | |
| COG0418 | 344 | PyrC Dihydroorotase [Nucleotide transport and meta | 83.02 | |
| COG3618 | 279 | Predicted metal-dependent hydrolase of the TIM-bar | 82.42 |
| >PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-57 Score=443.06 Aligned_cols=425 Identities=30% Similarity=0.452 Sum_probs=355.3
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcccc
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~ 98 (478)
++++|+|+.|+|.+++..++++++|+|+||+|++||+..... ...++++||++|++|+|||||+|+|+.++.+++..
T Consensus 1 ~~~li~~~~v~t~~~~~~~~~~g~V~i~~g~I~~vg~~~~~~---~~~~~~viD~~g~~i~PGlVn~H~H~~~~~~rg~~ 77 (435)
T PRK15493 1 MKTTYVNATIVTMNEQNEVIENGYIIVENDQIIDVNSGEFAS---DFEVDEVIDMKGKWVLPGLVNTHTHVVMSLLRGIG 77 (435)
T ss_pred CeEEEEccEEEEeCCCCcEecCcEEEEECCEEEEEcCccccc---cCCCCeEEeCCCCEEccceeecccCccchhhhccC
Confidence 468999999999887667889999999999999999843211 11356899999999999999999999999999988
Q ss_pred CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCc---cCHHHHHHHHHHhCCeEEEecccccCCC
Q 011766 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---QHVSEMAKAVELLGLRACLVQSTMDCGE 175 (478)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 175 (478)
.+.++.+|+....|+.+..+++++.+......+.+++++||||+.|+.. .......+.....|++.+.+...++.+.
T Consensus 78 ~~~~l~~wl~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~~~~ 157 (435)
T PRK15493 78 DDMLLQPWLETRIWPLESQFTPELAVASTELGLLEMVKSGTTSFSDMFNPIGVDQDAIMETVSRSGMRAAVSRTLFSFGT 157 (435)
T ss_pred CCCCHHHHHHhchhhchhcCCHHHHHHHHHHHHHHHHhCCccEEEccccccccCHHHHHHHHHHcCCcEEEeeeecCCCC
Confidence 8888999998888998888988888999999999999999999999753 2345667778889999988766654321
Q ss_pred CCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEec
Q 011766 176 GLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHV 255 (478)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~ 255 (478)
+. .....+. ...+.++++.. ..+.++..++++.+++++++.++++.++|+++|+++++|+
T Consensus 158 --~~-----~~~~~~~------------~~~~~~~~~~~-~~~~i~~~~~~~~~~t~s~e~l~~~~~~A~~~g~~v~~H~ 217 (435)
T PRK15493 158 --KE-----DEKKAIE------------EAEKYVKRYYN-ESGMLTTMVAPHSPYTCSTELLEECARIAVENQTMVHIHL 217 (435)
T ss_pred --Cc-----cHHHHHH------------HHHHHHHHhcC-CCCCeEEEEeCCCCCcCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 00 0111111 44455555543 2467888899999999999999999999999999999999
Q ss_pred cCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCCCcHHHHHHC
Q 011766 256 AEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHA 334 (478)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~ 334 (478)
.+...+...+...++ ..+++.+...+.+.++.++.||.++++++++++++.|+.+++||.+++.+ .+..|+++++++
T Consensus 218 ~e~~~e~~~~~~~~g--~~~~~~l~~~Gll~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P~sn~~l~~g~~p~~~~~~~ 295 (435)
T PRK15493 218 SETEREVRDIEAQYG--KRPVEYAASCGLFKRPTVIAHGVVLNDNERAFLAEHDVRVAHNPNSNLKLGSGIANVKAMLEA 295 (435)
T ss_pred CCCHHHHHHHHHHhC--CCHHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHHcCCeEEEChHHHHHHhcCcccHHHHHHC
Confidence 998877666665554 34788999999999999999999999999999999999999999999876 789999999999
Q ss_pred CCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccE
Q 011766 335 DICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADM 414 (478)
Q Consensus 335 gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADl 414 (478)
|+++++|||+...+++.+++++|+.+....+... .....++++++++++|.+||+++|++ ++|+|++|+.|||
T Consensus 296 Gv~v~lGtD~~~~~~~~d~~~~~~~a~~~~~~~~------~~~~~~~~~~~l~~aT~~gA~~lg~~-~~G~l~~G~~ADl 368 (435)
T PRK15493 296 GIKVGIATDSVASNNNLDMFEEMRIATLLQKGIH------QDATALPVETALTLATKGAAEVIGMK-QTGSLEVGKCADF 368 (435)
T ss_pred CCeEEEccCccccCCCcCHHHHHHHHHHHHhhcc------CCCCcCCHHHHHHHHhHHHHHHcCCC-CCCccCCCCcCCE
Confidence 9999999998766677899999998776654211 12346899999999999999999995 4899999999999
Q ss_pred EEEcCC-CCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHHHHHHh
Q 011766 415 VVVDPF-SWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLL 475 (478)
Q Consensus 415 vv~d~~-~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~ 475 (478)
|++|.+ .+...|..|+++.+++......|..|||+|++++++|+++.++.+++.++.+++.
T Consensus 369 vv~d~~~~~~~~p~~d~~~~lv~~~~~~~V~~v~V~G~~v~~~g~~~~~d~~~~~~~~~~~~ 430 (435)
T PRK15493 369 ITIDPSNKPHLQPADEVLSHLVYAASGKDISDVIINGKRVVWNGECKTLDEERIIFEASRYK 430 (435)
T ss_pred EEEcCCCCCCcCCccChHHhEEEeCCCCCccEEEECCEEEEECCeECCCCHHHHHHHHHHHH
Confidence 999974 5666788899999999888889999999999999999999999999988777653
|
|
| >PRK06687 chlorohydrolase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-55 Score=432.56 Aligned_cols=412 Identities=29% Similarity=0.483 Sum_probs=342.6
Q ss_pred eEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCC
Q 011766 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (478)
Q Consensus 21 ~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~ 100 (478)
.+|+|+.|+|+++...++++++|+|+||+|++||+..+.. ...+.++||++|++|+|||||+|+|+.++.+++...+
T Consensus 2 ~~~~n~~vvt~d~~~~~~~~g~VlV~~g~I~aVg~~~~~~---~~~~~~viD~~g~~v~PGlIn~H~H~~~~~~rg~~~~ 78 (419)
T PRK06687 2 KVFQHVNIVTCDQDFHVYLDGILAVKDSQIVYVGQDKPAF---LEQAEQIIDYQGAWIMPGLVNCHTHSAMTGLRGIRDD 78 (419)
T ss_pred cceEeeEEEEeCCCceEecCcEEEEECCEEEEecCccccc---ccccCeEEeCCCCEEccceeeeccCCCccccccccCC
Confidence 4799999999988777889999999999999999854321 1124589999999999999999999999999988877
Q ss_pred CCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCc---cCHHHHHHHHHHhCCeEEEecccccCCCCC
Q 011766 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---QHVSEMAKAVELLGLRACLVQSTMDCGEGL 177 (478)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 177 (478)
.++.+|+..+.|+.+..+++++.+......+.+++++||||+.++++ .......+.+...|++..++...+....
T Consensus 79 ~~~~~wl~~~~~~~~~~~~~~~~~~~~~~a~~e~l~~GvTTv~d~~~~~~~~~~~~~~a~~~~Gir~~~~~~~~~~~~-- 156 (419)
T PRK06687 79 SNLHEWLNDYIWPAESEFTPDMTTNAVKEALTEMLQSGTTTFNDMYNPNGVDIQQIYQVVKTSKMRCYFSPTLFSSET-- 156 (419)
T ss_pred CCHHHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCcceeehhhccccccHHHHHHHHHHhCCceEeccccccCCc--
Confidence 88999999888888878888777888888999999999999999753 2345667778888998876544332110
Q ss_pred CCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccC
Q 011766 178 PASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAE 257 (478)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~ 257 (478)
........ +..+.++++.......++.+++++..++++++.+.++.++|+++|+++++|+.+
T Consensus 157 ------~~~~~~~~------------~~~~~i~~~~~~~~~~i~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~i~~H~~e 218 (419)
T PRK06687 157 ------ETTAETIS------------RTRSIIDEILKYKNPNFKVMVAPHSPYSCSRDLLEASLEMAKELNIPLHVHVAE 218 (419)
T ss_pred ------ccHHHHHH------------HHHHHHHHHhccCCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 00111122 556666666554556788889999999999999999999999999999999999
Q ss_pred ChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCCCcHHHHHHCCC
Q 011766 258 IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADI 336 (478)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~gv 336 (478)
...+.......++ ..+++.+...+.++++.++.||.++++++++++++.|+.+++||.++... .+.+|+++++++|+
T Consensus 219 ~~~e~~~~~~~~g--~~~~~~l~~~g~l~~~~~~~H~~~~~~~~~~~la~~g~~v~~~P~sn~~l~~g~~p~~~~~~~Gv 296 (419)
T PRK06687 219 TKEESGIILKRYG--KRPLAFLEELGYLDHPSVFAHGVELNEREIERLASSQVAIAHNPISNLKLASGIAPIIQLQKAGV 296 (419)
T ss_pred CHHHHHHHHHHHC--cCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHHcCCeEEECcHHhhhhccCCCcHHHHHHCCC
Confidence 8877666655544 34678889999999999999999999999999999999999999998876 78899999999999
Q ss_pred cEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEE
Q 011766 337 CVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVV 416 (478)
Q Consensus 337 ~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv 416 (478)
++++|||+...+++.+++++|+.+........ .....++.+++++++|.+||+++|+++++|+|++|+.|||++
T Consensus 297 ~v~lGtD~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~aT~~gA~~lg~~~~~G~l~~G~~ADlv~ 370 (419)
T PRK06687 297 AVGIATDSVASNNNLDMFEEGRTAALLQKMKS------GDASQFPIETALKVLTIEGAKALGMENQIGSLEVGKQADFLV 370 (419)
T ss_pred eEEEeCCCCCCCCChhHHHHHHHHHHHhcccc------CCCccCCHHHHHHHHhHHHHHHcCCCCCCcccCCCccCCEEE
Confidence 99999998666677889999988765543210 112358999999999999999999988899999999999999
Q ss_pred EcCC-CCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeeccc
Q 011766 417 VDPF-SWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLM 463 (478)
Q Consensus 417 ~d~~-~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~ 463 (478)
+|.+ .+...|..||+..+++.....+|..|||+|++|+++|++++++
T Consensus 371 ~d~~~~~~~~p~~~~~~~lv~~~~~~~v~~v~v~G~~v~~~g~~~~~d 418 (419)
T PRK06687 371 IQPQGKIHLQPQENMLSHLVYAVKSSDVDDVYIAGEQVVKQGQVLTVE 418 (419)
T ss_pred ECCCCCCCcCCccCHHHHhheeCCCCCccEEEECCEEEEECCeEecCC
Confidence 9986 4677788899999999999999999999999999999998875
|
|
| >PRK07228 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-54 Score=424.96 Aligned_cols=430 Identities=36% Similarity=0.604 Sum_probs=346.1
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcccc
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~ 98 (478)
|+++|+|++|+++++. ..+++++|+|+||+|++|++.... ...+++||++|++|+|||||+|+|+.+...++..
T Consensus 1 ~~~~i~~~~vi~~~~~-~~~~~g~V~I~dg~I~~vg~~~~~-----~~~~~vID~~G~~vlPGlId~H~H~~~~~~~g~~ 74 (445)
T PRK07228 1 MTILIKNAGIVTMNAK-REIVDGDVLIEDDRIAAVGDRLDL-----EDYDDHIDATGKVVIPGLIQGHIHLCQTLFRGIA 74 (445)
T ss_pred CeEEEEccEEEecCCC-cEecccEEEEECCEEEEecCCccc-----CcCCeEEeCCCCEEecCEEecccCCccccceecc
Confidence 5689999999998654 456899999999999999975421 1256899999999999999999999988777777
Q ss_pred CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc-CHHHHHHHHHHhCCeEEEecccccCCCCC
Q 011766 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-HVSEMAKAVELLGLRACLVQSTMDCGEGL 177 (478)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 177 (478)
.+.++.+|+....++....+++++.+......+.+++.+||||++++++. ......+.....|++...+....+.+...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~L~~GvTtv~d~~~~~~~~~~~~a~~~~g~r~~~~~~~~~~~~~~ 154 (445)
T PRK07228 75 DDLELLDWLKDRIWPLEAAHDAESMYYSALLGIGELIESGTTTIVDMESVHHTDSAFEAAGESGIRAVLGKVMMDYGDDV 154 (445)
T ss_pred CCCCHHHHHHhhhhhhhhhCCHHHHHHHHHHHHHHHHhcCceEEEccccccChHHHHHHHHHcCCeEEEecceecCCcCC
Confidence 77788899988888888888888888888999999999999999998753 34566777888999887776655432111
Q ss_pred CCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccC
Q 011766 178 PASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAE 257 (478)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~ 257 (478)
+... .......+. +..+.++.+.....+.+...++++....++++.+++++++++++|+++++|+.+
T Consensus 155 p~~~-~~~~~~~l~------------~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e 221 (445)
T PRK07228 155 PEGL-QEDTEASLA------------ESVRLLEKWHGADNGRIRYAFTPRFAVSCTEELLRGVRDLADEYGVRIHTHASE 221 (445)
T ss_pred Cccc-cccHHHHHH------------HHHHHHHHhcCCCCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 1110 001111122 445556665443344566556777777889999999999999999999999998
Q ss_pred ChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCCCcHHHHHHCCC
Q 011766 258 IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADI 336 (478)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~gv 336 (478)
...+...+....+ ...++.+...+.++.+..+.|+.++++++++++++.|+.+++||.+++.. .+..|++++++.|+
T Consensus 222 ~~~~~~~~~~~~g--~~~~~~l~~~g~~~~~~~l~H~~~~~~~~~~~~~~~g~~v~~~P~~~~~~~~~~~p~~~~~~~Gv 299 (445)
T PRK07228 222 NRGEIETVEEETG--MRNIHYLDEVGLTGEDLILAHCVWLDEEEREILAETGTHVTHCPSSNLKLASGIAPVPDLLERGI 299 (445)
T ss_pred CHHHHHHHHHHhC--CCHHHHHHHCCCCCCCcEEEEEecCCHHHHHHHHHcCCeEEEChHHhhhcccccCcHHHHHHCCC
Confidence 8776665554443 33678888999999999999999999999999999999999999998766 67899999999999
Q ss_pred cEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEE
Q 011766 337 CVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVV 416 (478)
Q Consensus 337 ~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv 416 (478)
++++|||+++.....+++.+++.+........ .....+|++++++++|.+||+++|+++++|+|++|+.|||||
T Consensus 300 ~v~lGtD~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~s~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvv 373 (445)
T PRK07228 300 NVALGADGAPCNNTLDPFTEMRQAALIQKVDR------LGPTAMPARTVFEMATLGGAKAAGFEDEIGSLEEGKKADLAI 373 (445)
T ss_pred eEEEcCCCCccCCCccHHHHHHHHHHHhhhcc------CCCcccCHHHHHHHHHHHHHHHhCCCCCccccCCCCccCEEE
Confidence 99999998776556788988887665433210 012358999999999999999999988899999999999999
Q ss_pred EcCCCCCCCCcC--ChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHHHHHHh
Q 011766 417 VDPFSWPMVPVH--DRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLL 475 (478)
Q Consensus 417 ~d~~~~~~~~~~--d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~ 475 (478)
+|.+.+...|.. ||+..+++.....+|..||++|++||++|+++..+.+++.++.++..
T Consensus 374 ld~~~~~~~p~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~~~~~~~~~ 434 (445)
T PRK07228 374 LDLDGLHATPSHGVDVLSHLVYAAHGSDVETTMVDGKIVMEDGELTTIDADAVRREANRSI 434 (445)
T ss_pred EcCCCcccCCCcccCHHHHhheeCCCCCeeEEEECCEEEEECCeEccCCHHHHHHHHHHHH
Confidence 999988877777 88888888777889999999999999999999999999988776653
|
|
| >PRK09045 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-54 Score=421.82 Aligned_cols=427 Identities=32% Similarity=0.531 Sum_probs=342.5
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccc
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~ 97 (478)
+.+++|+|+.|+|++++..++++++|+|+||+|++||+..+....+ .+.++||++|++|+|||||+|+|+.++.+++.
T Consensus 6 ~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~~~~--~~~~~iD~~g~~v~PG~id~H~Hl~~~~~~g~ 83 (443)
T PRK09045 6 PVDLLIEARWIVPVEPAGVVLEDHAVAIRDGRIVAILPRAEARARY--AAAETVELPDHVLIPGLINAHTHAAMSLLRGL 83 (443)
T ss_pred cccEEEEccEEEEeCCCceEeeccEEEEECCEEEEecCcccccccC--CcceEEeCCCCEEecCEeccccChhhHhhhhc
Confidence 3589999999999886667889999999999999999864432211 24689999999999999999999999888877
Q ss_pred cCCCCchHHhhhcccccc-CCCChHHHHHHHHHHHHHHHhcCcceeecCCccCHHHHHHHHHHhCCeEEEecccccCCCC
Q 011766 98 ADDVDLMTWLHDRIWPYE-SNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEG 176 (478)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 176 (478)
....++.+|+....|+.+ ..++++..+......+.+++++||||++++. .......+.....|++.+.+...++..
T Consensus 84 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~G~Ttv~d~~-~~~~~~~~~~~~~G~R~~~~~~~~~~~-- 160 (443)
T PRK09045 84 ADDLPLMTWLQDHIWPAEGAWVSEEFVRDGTLLAIAEMLRGGTTCFNDMY-FFPEAAAEAAHQAGMRAQIGMPVLDFP-- 160 (443)
T ss_pred cCCCCHHHHHHhhhhhhhhccCCHHHHHHHHHHHHHHHHhcCCcEEEecc-ccHHHHHHHHHHcCCeEEEecccccCC--
Confidence 777788899987666544 3356777788888899999999999999975 334555677788999987776554321
Q ss_pred CCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEecc
Q 011766 177 LPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVA 256 (478)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~ 256 (478)
..+. ....+.+. ...+..+++. +.+.+++.+.++..+.++++.+++++++|+++|+++++|+.
T Consensus 161 --~~~~-~~~~~~l~------------~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~ 223 (443)
T PRK09045 161 --TAWA-SDADEYLA------------KGLELHDQWR--HHPLISTAFAPHAPYTVSDENLERIRTLAEQLDLPIHIHLH 223 (443)
T ss_pred --Cccc-cCHHHHHH------------HHHHHHHHhc--CCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEeec
Confidence 1110 00111111 2234444443 34678888888988999999999999999999999999998
Q ss_pred CChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCCCcHHHHHHCC
Q 011766 257 EIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHAD 335 (478)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~g 335 (478)
+...+........+ ..+++.+...+.++++.++.||.++++++++++++.|+.+++||.+++.. .+..|++++++.|
T Consensus 224 e~~~~~~~~~~~~g--~~~~~~l~~~g~l~~r~~~~H~~~l~~~~~~~la~~g~~i~~~P~~~~~~~~~~~~~~~l~~~G 301 (443)
T PRK09045 224 ETAQEIADSLKQHG--QRPLARLARLGLLGPRLIAVHMTQLTDAEIALLAETGCSVVHCPESNLKLASGFCPVAKLLQAG 301 (443)
T ss_pred CcHHHHHHHHHHhC--CCHHHHHHHcCCCCCCeEEEEecCCCHHHHHHHHHcCCeEEECHHHHhhhccCCCcHHHHHHCC
Confidence 76665554444333 34678888999999999999999999999999999999999999988765 5688999999999
Q ss_pred CcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEE
Q 011766 336 ICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMV 415 (478)
Q Consensus 336 v~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlv 415 (478)
+++++|||++....+.+++.+++.+....... .....+++++++|+++|.+||+.+|+++++|+|++|+.||||
T Consensus 302 v~v~lGtD~~~~~~~~~~~~~~~~a~~~~~~~------~~~~~~~~~~~al~~~T~~~A~~lg~~~~~G~i~~G~~ADlv 375 (443)
T PRK09045 302 VNVALGTDGAASNNDLDLFGEMRTAALLAKAV------AGDATALPAHTALRMATLNGARALGLDDEIGSLEPGKQADLV 375 (443)
T ss_pred CeEEEecCCCCCCCCccHHHHHHHHHHHHhhc------cCCCCcCCHHHHHHHHhHHHHHHcCCCCCCcccCCCCcCCEE
Confidence 99999999876656678899888775443211 112346899999999999999999998889999999999999
Q ss_pred EEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHHHHHH
Q 011766 416 VVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKL 474 (478)
Q Consensus 416 v~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~ 474 (478)
|+|.+++...|..|+...+++.....+|..||++|++||++|++++.+.++++++.+++
T Consensus 376 v~d~~~~~~~p~~~~~~~lv~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~~~~~~~~ 434 (443)
T PRK09045 376 AVDLSGLETQPVYDPVSQLVYAAGREQVSHVWVAGKQLLDDRELTTLDEAELLARARQW 434 (443)
T ss_pred EEeCCCCCcCCccChHhHhhEeCCCCCccEEEECCEEEEECCcCCCCCHHHHHHHHHHH
Confidence 99999888778888888888877788999999999999999999999999999877654
|
|
| >PRK07203 putative chlorohydrolase/aminohydrolase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-53 Score=416.99 Aligned_cols=421 Identities=25% Similarity=0.411 Sum_probs=341.8
Q ss_pred eEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccC-
Q 011766 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD- 99 (478)
Q Consensus 21 ~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~- 99 (478)
++|+|++|++.++...+..+++|+|+||+|++||+..+....+ ...++||++|++|+|||||+|+|+.++.+++...
T Consensus 2 ~li~~~~i~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~~~~--~~~~viD~~g~lv~PGfID~H~H~~~~~~rg~~~~ 79 (442)
T PRK07203 2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAKY--PDAEFIDAKGKLIMPGLINSHNHIYSGLARGMMAN 79 (442)
T ss_pred EEEECCEEEeCCCCCceeeccEEEEECCEEEEEeCchhhcccc--CCCeEEeCCCCEEecceeeccccchhhhhcccccc
Confidence 5799999998766545677899999999999999743321111 2457999999999999999999999888777542
Q ss_pred ---CCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc------CHHHHHHHHHHhCCeEEEeccc
Q 011766 100 ---DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ------HVSEMAKAVELLGLRACLVQST 170 (478)
Q Consensus 100 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~------~~~~~~~~~~~~g~~~~~~~~~ 170 (478)
..++.+|+....|+.+..+++++.+...+..+.+++++||||++|+... ......+.....|++.+.+...
T Consensus 80 ~~~~~~l~~~l~~~~~~~~~~~t~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~ 159 (442)
T PRK07203 80 IPPPPDFISILKNLWWRLDRALTLEDVYYSALICSLEAIKNGVTTVFDHHASPNYIGGSLFTIADAAKKVGLRAMLCYET 159 (442)
T ss_pred cCCCCCHHHHHHhheehhhhcCCHHHHHHHHHHHHHHHHHcCceEEEccccccccccchHHHHHHHHHHhCCeEEEeccc
Confidence 2478899988888888889999999998889999999999999986421 1235567788899999876554
Q ss_pred ccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCc
Q 011766 171 MDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTG 250 (478)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 250 (478)
.+.+ + .......+. ...++++++.....+.+..+++++..++++++.++++.++|+++|++
T Consensus 160 ~d~~-~------~~~~~~~l~------------~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~~~l~~~~~lA~~~g~~ 220 (442)
T PRK07203 160 SDRD-G------EKELQEGVE------------ENIRFIKHIDEAKDDMVEAMFGLHASFTLSDATLEKCREAVKETGRG 220 (442)
T ss_pred ccCC-c------chhHHHHHH------------HHHHHHHHhcCCCCCceEEEEccCCCcCcCHHHHHHHHHHHHHcCCc
Confidence 4321 0 000111122 45555666655445678888999999999999999999999999999
Q ss_pred eeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCCCcHH
Q 011766 251 IHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIK 329 (478)
Q Consensus 251 v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~ 329 (478)
+++|+.+...+.......++ ..+++.+...+.++++.++.||.++++++++++++.|+.+++||.+|+.. .+.+|++
T Consensus 221 i~~H~~E~~~e~~~~~~~~g--~~~v~~l~~~Gll~~~~~~~H~~~~~~~d~~~la~~g~~v~~~P~sn~~l~~g~~p~~ 298 (442)
T PRK07203 221 YHIHVAEGIYDVSDSHKKYG--KDIVERLADFGLLGEKTLAAHCIYLSDEEIDLLKETDTFVVHNPESNMGNAVGYNPVL 298 (442)
T ss_pred EEEEecCChHHHHHHHHHcC--CCHHHHHHhCCCCCCCcEEEEeecCCHHHHHHHHhcCCeEEECchhhhhcccCCCCHH
Confidence 99999999988877776554 45889999999999999999999999999999999999999999999887 6799999
Q ss_pred HHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcC--CCCCccccc
Q 011766 330 EMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVL--WDNDIGSLE 407 (478)
Q Consensus 330 ~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lg--l~~~~G~l~ 407 (478)
+|+++|+++++|||+. +.+++++|+.+....+... . ....+.+++++++|.+||+.+| +++++|+|+
T Consensus 299 ~~~~~Gv~v~lGtD~~----~~d~~~~~~~a~~~~~~~~------~-~~~~~~~~~~~~aT~~gA~~lg~~~~~~~G~l~ 367 (442)
T PRK07203 299 EMIKNGILLGLGTDGY----TSDMFESYKVANFKHKHAG------G-DPNVGWPESPAMLFENNNKIAERYFGAKFGILE 367 (442)
T ss_pred HHHHCCCeEEEcCCCC----CccHHHHHHHHHHHhcccc------C-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 9999999999999974 2489999988876554210 0 1124578999999999999999 456789999
Q ss_pred cCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHHHHHHh
Q 011766 408 AGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLL 475 (478)
Q Consensus 408 ~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~ 475 (478)
+|+.||||++|.+.....+..||++.+++......|..|||+|++|+++|++++.+.+++.++.+++.
T Consensus 368 ~G~~ADlvv~d~~~~~~~~~~~~~~~~v~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~i~~~~~~~~ 435 (442)
T PRK07203 368 EGAKADLIIVDYNPPTPLNEDNINGHILFGMNGGSVDTTIVNGKVVMEDRKFLNFDEESIYARARKAA 435 (442)
T ss_pred CCCccCEEEEcCCCCeecCccccccceEeecCCCceEEEEECCEEEEECCcccccCHHHHHHHHHHHH
Confidence 99999999999986555566788888888888899999999999999999999999999887776654
|
|
| >TIGR03314 Se_ssnA putative selenium metabolism protein SsnA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-53 Score=415.61 Aligned_cols=420 Identities=25% Similarity=0.411 Sum_probs=342.6
Q ss_pred eEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCC
Q 011766 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (478)
Q Consensus 21 ~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~ 100 (478)
++|+|++|++.+++..++.+++|+|++|+|++|++..+..... .+.++||++|++|+|||||+|+|+.+..+++...+
T Consensus 1 ~li~~~~i~t~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~--~~~~~id~~g~~v~PG~vd~H~H~~~~~~rg~~~d 78 (441)
T TIGR03314 1 LLIGNGTAVQLDPTRPIQEGGDIAIDGDVIKAVGPTEELKQKY--PEATFIDAKGKLIMPGFINTHNHFYSTFARGMMAD 78 (441)
T ss_pred CEEECCEEEecCCCCceEeccEEEEECCEEEEEcCchhhcccC--CCCeEEeCCCCEEecCeeecccchhhhhhcccccc
Confidence 4799999998776555778999999999999999864332111 24578999999999999999999998888876543
Q ss_pred ----CCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc------CHHHHHHHHHHhCCeEEEeccc
Q 011766 101 ----VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ------HVSEMAKAVELLGLRACLVQST 170 (478)
Q Consensus 101 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~------~~~~~~~~~~~~g~~~~~~~~~ 170 (478)
.++.+|+....|+.+..+++++.+......+.+++++||||++|+... ......+.....|++.+++...
T Consensus 79 ~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~ 158 (441)
T TIGR03314 79 IPPPPDFISILKNLWWRLDRALTLEDVYYSGLICSLDAIKSGCTTVIDHHASPNAITGSLSTIRKAADEAGLRTMLCYET 158 (441)
T ss_pred CCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHHHcCCeEEEecccccccccchHHHHHHHHHHhCCeEEEeeee
Confidence 368899988888888889999999999999999999999999997421 1345678889999999887665
Q ss_pred ccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCc
Q 011766 171 MDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTG 250 (478)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 250 (478)
++.... ......+. ...++++++.....+.++..++++.+++++++.++++.++|++++++
T Consensus 159 ~~~~~~-------~~~~~~l~------------~~~~~~~~~~~~~~~~i~~~~~p~~~~t~s~~~l~~~~~lA~~~~~~ 219 (441)
T TIGR03314 159 SDRDGG-------KEMQEGVE------------ENIAFIKKSSGKEPYLVEAHIGAHAPFTVSDAGLEMCREAVQATGRG 219 (441)
T ss_pred ecCCCc-------ccHHHHHH------------HHHHHHHHhccCCCCceEEEEecCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 542110 00111111 34455566655445678888999999999999999999999999999
Q ss_pred eeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCCCcHH
Q 011766 251 IHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIK 329 (478)
Q Consensus 251 v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~ 329 (478)
+++|+.+...+.......++ ..+++.++..+.++++.++.||.++++++++++++.|+.+++||.+|+.+ .+.+|+.
T Consensus 220 i~~H~~E~~~e~~~~~~~~g--~~~~~~l~~~G~l~~~~~~~H~~~~~~~d~~~la~~g~~v~~cP~sn~~l~~G~~p~~ 297 (441)
T TIGR03314 220 FHIHVAEDIYDVEDSHHKYG--KDIVERLADFGLLGSKTLAAHCIYLSDREIELLNETDTFVVHNPESNMGNAVGYNPVL 297 (441)
T ss_pred EEEEcCCCHHHHHHHHHHcC--CCHHHHHHHCCCCCCCeEEEEEecCCHHHHHHHHHcCCcEEECHHHHhhhccCCCCHH
Confidence 99999999888777766554 45889999999999999999999999999999999999999999999987 6899999
Q ss_pred HHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcC--CCCCccccc
Q 011766 330 EMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVL--WDNDIGSLE 407 (478)
Q Consensus 330 ~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lg--l~~~~G~l~ 407 (478)
+++++|+++++|||+.. .+++++|+.+....+... ......+.++++++|.++|+.++ +..++|+|+
T Consensus 298 ~~~~~Gv~v~LGtD~~~----~d~~~em~~a~~~~~~~~-------~~~~~~~~~~~~~aT~~ga~al~~~l~~~~G~Le 366 (441)
T TIGR03314 298 RMFKNGILLGLGTDGYT----SDMFESLKFANFKHKDAG-------GDLNAAWPESPAMLFENNNEIAERNFGAKFGRLE 366 (441)
T ss_pred HHHHCCCEEEEcCCCCC----cCHHHHHHHHHHHhcccc-------CCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999742 489999998877654221 11123467899999999999996 445689999
Q ss_pred cCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHHHHHH
Q 011766 408 AGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKL 474 (478)
Q Consensus 408 ~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~ 474 (478)
+|+.|||+++|.+.....+..++.+.+++.....+|..|||+|++|++++++++++.+++.++.+++
T Consensus 367 ~G~~ADlvv~d~~~~~~~~~~~~~~~lv~~~~~~~V~~v~V~G~~v~~~~~~~~~d~~~i~~~~~~~ 433 (441)
T TIGR03314 367 PGAKADLIIVDYNAPTPLTADNINGHILFGMNGGSVDSTMVNGKVVMEDREFLHFDEAPIYARARKL 433 (441)
T ss_pred CCCcccEEEEcCCCCeeechhhccccceecCCCCeeEEEEECCEEEEECCcccccCHHHHHHHHHHH
Confidence 9999999999998666566677777888777788999999999999999999999999988776654
|
Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown. |
| >PRK08204 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-52 Score=414.16 Aligned_cols=424 Identities=26% Similarity=0.363 Sum_probs=335.1
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcccc
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~ 98 (478)
..++|+|+.|++.++..+.+.+++|+|++|+|++|++..+. .+.++||++|++|+|||||+|+|+.+..+++..
T Consensus 2 ~~~li~~~~v~~~~~~~~~~~~~~v~V~~g~I~~Vg~~~~~------~~~~viD~~g~~v~PGlId~H~H~~~~~~~~~~ 75 (449)
T PRK08204 2 KRTLIRGGTVLTMDPAIGDLPRGDILIEGDRIAAVAPSIEA------PDAEVVDARGMIVMPGLVDTHRHTWQSVLRGIG 75 (449)
T ss_pred CcEEEECcEEEecCCCCCccccceEEEECCEEEEecCCCCC------CCCeEEeCCCCEEecCEEeeeeccchhhhcccc
Confidence 45789999999887755677899999999999999985331 245799999999999999999999888888777
Q ss_pred CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc-----CHHHHHHHHHHhCCeEEEecccccC
Q 011766 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-----HVSEMAKAVELLGLRACLVQSTMDC 173 (478)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~ 173 (478)
.+.++.+|+....++....+++++.+........+++++||||+++++.. ......+.+...|++...+......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~L~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~G~r~~~~~~~~~~ 155 (449)
T PRK08204 76 ADWTLQTYFREIHGNLGPMFRPEDVYIANLLGALEALDAGVTTLLDWSHINNSPEHADAAIRGLAEAGIRAVFAHGSPGP 155 (449)
T ss_pred CCCcHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHhcCCeEEeecccccCChhHHHHHHHHHHHcCCeEEEEccccCC
Confidence 67778888876666777788888888888888999999999999986532 2345567778889988765544332
Q ss_pred CCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeE
Q 011766 174 GEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHM 253 (478)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~ 253 (478)
+. .+.......... ....+++++....+..+.....++....++++.+.+++++|++.|+++++
T Consensus 156 ~~----~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~ 219 (449)
T PRK08204 156 SP----YWPFDSVPHPRE------------DIRRVKKRYFSSDDGLLTLGLAIRGPEFSSWEVARADFRLARELGLPISM 219 (449)
T ss_pred CC----CCCcchhhhhHH------------HHHHHHHhhccCCCCceEEEEecCCcccCCHHHHHHHHHHHHHcCCcEEE
Confidence 21 111111111111 44455555555444455555666666677889999999999999999999
Q ss_pred eccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCCCcHHHHH
Q 011766 254 HVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEML 332 (478)
Q Consensus 254 H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~ 332 (478)
|+.+.... .....++.+...+.++.+..+.|+.++++++++++++.|+.+++||.++... .+..|+++++
T Consensus 220 H~~e~~~~---------~~~~~~~~l~~~g~~~~~~~i~H~~~~~~~~~~~la~~g~~v~~~P~~~~~~g~~~~~~~~~~ 290 (449)
T PRK08204 220 HQGFGPWG---------ATPRGVEQLHDAGLLGPDLNLVHGNDLSDDELKLLADSGGSFSVTPEIEMMMGHGYPVTGRLL 290 (449)
T ss_pred EEcCCCcc---------cCCCHHHHHHHCCCCCCCeEEEecCCCCHHHHHHHHHcCCCEEEChHHHhhhcCCCCcHHHHH
Confidence 99876542 1123567777888888899999999999999999999999999999988765 5688999999
Q ss_pred HCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccc----cC-CCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccc
Q 011766 333 HADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVF----AN-GTTDPAALPAETVLRMATINGAKSVLWDNDIGSLE 407 (478)
Q Consensus 333 ~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~ 407 (478)
++|+++++|||+++. ++.+++.+|+.+.......... .. .+..+.++++.++|+++|.++|+++|+++++|+|+
T Consensus 291 ~~Gv~v~lGtD~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~T~~gA~~lg~~~~~G~le 369 (449)
T PRK08204 291 AHGVRPSLGVDVVTS-TGGDMFTQMRFALQAERARDNAVHLREGGMPPPRLTLTARQVLEWATIEGARALGLEDRIGSLT 369 (449)
T ss_pred hcCCceeeccccCCC-CCcCHHHHHHHHHHHHHhhcccccccccccCCCcCCCCHHHHHHHHhHHHHHHcCCCCCCcccC
Confidence 999999999997543 5678999998877543321100 00 01134679999999999999999999988899999
Q ss_pred cCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHHHHHH
Q 011766 408 AGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKL 474 (478)
Q Consensus 408 ~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~ 474 (478)
+||.|||||+|.+++...|..||++.+++.....+|..||++|++|++++++++++.+++.++.++.
T Consensus 370 ~Gk~ADlvvld~~~~~~~p~~dp~~~lv~~~~~~~v~~v~v~G~~v~~~~~~~~~d~~~~~~~~~~~ 436 (449)
T PRK08204 370 PGKQADLVLIDATDLNLAPVHDPVGAVVQSAHPGNVDSVMVAGRAVKRNGKLLGVDLERLRRLAAAS 436 (449)
T ss_pred CCCcCCEEEEcCCCccccCCcChhhhheeccCCCCceEEEECCEEEEECCEeccCCHHHHHHHHHHH
Confidence 9999999999999888889999999888877789999999999999999999999999988877654
|
|
| >PRK12393 amidohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-52 Score=407.88 Aligned_cols=432 Identities=25% Similarity=0.338 Sum_probs=338.8
Q ss_pred ceeEEEecE-EEeeCCCCceeec-ceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcc
Q 011766 19 STMILHNAV-IVTMDKESRVFRN-GGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (478)
Q Consensus 19 ~~~~i~n~~-I~t~d~~~~~~~~-~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~ 96 (478)
.+++|+|++ |+|.+++...+.+ ++|+|++|+|++|++. . +..++++||++|++|+|||||+|+|+.++.+++
T Consensus 2 ~~~li~~~~~v~~~~~~~~~~~~~~~v~I~~g~I~~Vg~~-~-----~~~~~~viD~~g~~v~PG~VnaH~Hl~~~~~rg 75 (457)
T PRK12393 2 PSLLIRNAAAIMTGLPGDAARLGGPDIRIRDGRIAAIGAL-T-----PLPGERVIDATDCVVYPGWVNTHHHLFQSLLKG 75 (457)
T ss_pred CcEEEECCeEEEecCCCccccccCceEEEECCEEEEEecc-C-----CCCCCeEEeCCCCEEecCEeecccCcccccccc
Confidence 578999996 7876554334444 4899999999999972 1 123568999999999999999999999999888
Q ss_pred cc--CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc--------CHHHHHHHHHHhCCeEEE
Q 011766 97 IA--DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------HVSEMAKAVELLGLRACL 166 (478)
Q Consensus 97 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~--------~~~~~~~~~~~~g~~~~~ 166 (478)
.. .+.++.+|+....|+.+..+++++.+...+.++.+++++||||++|++.. ......++....|++...
T Consensus 76 ~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~a~~~~G~R~~~ 155 (457)
T PRK12393 76 VPAGINQSLTAWLAAVPYRFRARFDEDLFRLAARIGLVELLRSGCTTVADHHYLYHPGMPFDTGDILFDEAEALGMRFVL 155 (457)
T ss_pred cccccCCchHHHhhhCcchhhhhCCHHHHHHHHHHHHHHHHhCCccEeecchhhcccccccchHHHHHHHHHHcCCeEEE
Confidence 74 35578899988888877888999999999999999999999999987421 135677888999999987
Q ss_pred ecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCC-CCCeEEEEecccc-ccCCHHHHHHHHHHH
Q 011766 167 VQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAA-DGRIRIWFGIRQI-MNATDRLLLETRDMA 244 (478)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~l~~~~~~a 244 (478)
+....+...+.+..+.......... .......++.+++.... ...+++.+.++.. ++++++.+.++.+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~a 227 (457)
T PRK12393 156 CRGGATQTRGDHPGLPTALRPETLD--------QMLADVERLVSRYHDASPDSLRRVVVAPTTPTFSLPPELLREVARAA 227 (457)
T ss_pred EccccccccccCCCCCCcccccCHH--------HHHHHHHHHHHHhcCCCcCCceEEEEcCCCCCCCcCHHHHHHHHHHH
Confidence 7654432111111110000000000 00012344445543322 2346666777776 889999999999999
Q ss_pred HHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-c
Q 011766 245 REFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-L 323 (478)
Q Consensus 245 ~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~ 323 (478)
+++|+++++|+.+...+........+ ..+++.+...+.++++.++.||.++++++++++++.|+.+++||.++++. .
T Consensus 228 ~~~g~~~~~H~~e~~~~~~~~~~~~g--~~~~~~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P~sn~~lg~ 305 (457)
T PRK12393 228 RGMGLRLHSHLSETVDYVDFCREKYG--MTPVQFVAEHDWLGPDVWFAHLVKLDAEEIALLAQTGTGIAHCPQSNGRLGS 305 (457)
T ss_pred HHcCCeEEEEeCCCHHHHHHHHHHhC--CCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHHcCCeEEECchhhhhhcc
Confidence 99999999999988776665554433 34678889999999999999999999999999999999999999998877 6
Q ss_pred CCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCc
Q 011766 324 GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDI 403 (478)
Q Consensus 324 ~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~ 403 (478)
+.+|++++++.|+++++|||+...+.+.+++.+|+.+....... .....++.+++++++|.+||+++|+++ +
T Consensus 306 g~~~~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~a~~~~~~~-------~~~~~~~~~~~l~~~T~~~A~~l~~~~-~ 377 (457)
T PRK12393 306 GIAPALAMEAAGVPVSLGVDGAASNESADMLSEAHAAWLLHRAE-------GGADATTVEDVVHWGTAGGARVLGLDA-I 377 (457)
T ss_pred cCCCHHHHHHCCCeEEEecCCcccCCCccHHHHHHHHHHHhhhc-------CCCCCCCHHHHHHHHhHHHHHHhCCCC-C
Confidence 78999999999999999999876656789999999877654321 112358999999999999999999964 8
Q ss_pred cccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHHHHHH
Q 011766 404 GSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKL 474 (478)
Q Consensus 404 G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~ 474 (478)
|+|++|+.|||+|+|.+.....+..||....+......+|..||++|+++|++|+++.++.+++.+..+++
T Consensus 378 G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~~~~~~~d~~~i~~~~~~~ 448 (457)
T PRK12393 378 GTLAVGQAADLAIYDLDDPRFFGLHDPAIAPVACGGPAPVKALLVNGRPVVENGAIPGLDLAELRHDARAA 448 (457)
T ss_pred CCcCCCCcCCEEEEeCCCcccCCCCCchhhhhccCCCCCeeEEEECCEEEEECCccCCCCHHHHHHHHHHH
Confidence 99999999999999999877777778887777777788999999999999999999999999998877665
|
|
| >PRK06038 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-52 Score=404.37 Aligned_cols=418 Identities=37% Similarity=0.604 Sum_probs=340.9
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcccc
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~ 98 (478)
.+++|+|++|+++++ ..+.+++|+|++|+|++|++... ....++||+.|++|+|||||+|+|+.++.+++..
T Consensus 2 ~~~~~~~~~i~~~~~--~~~~~~~v~v~~g~I~~i~~~~~------~~~~~~id~~g~~v~PG~vd~H~H~~~~~~~g~~ 73 (430)
T PRK06038 2 ADIIIKNAYVLTMDA--GDLKKGSVVIEDGTITEVSESTP------GDADTVIDAKGSVVMPGLVNTHTHAAMTLFRGYA 73 (430)
T ss_pred CCEEEEccEEEECCC--CeeeccEEEEECCEEEEecCCCC------CCCCEEEeCCCCEEecCeeecccCcchhhhhhcc
Confidence 468899999998763 34677899999999999997532 1245799999999999999999999999888877
Q ss_pred CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCHHHHHHHHHHhCCeEEEecccccCCCCCC
Q 011766 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLP 178 (478)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 178 (478)
.+.++.+|+....++....+++++.+...+..+.+++++|+||++|... ......+.....|++...+....+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~~-~~~~~~~a~~~~GiR~~~~~~~~d~~---- 148 (430)
T PRK06038 74 DDLPLAEWLNDHIWPAEAKLTAEDVYAGSLLACLEMIKSGTTSFADMYF-YMDEVAKAVEESGLRAALSYGMIDLG---- 148 (430)
T ss_pred CCCCHHHHHHhhhhhchhcCCHHHHHHHHHHHHHHHHhcCceeEEcccc-CHHHHHHHHHHhCCeEEEEchhccCC----
Confidence 7788999998777777777888888888888999999999999999763 34556677788999987654332211
Q ss_pred CcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCC
Q 011766 179 ASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEI 258 (478)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~ 258 (478)
........+. ...+.++.+.....+.+...++++..+.++++.++++++.|+++|+++++|+.+.
T Consensus 149 ---~~~~~~~~l~------------~~~~~i~~~~~~~~g~v~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~ 213 (430)
T PRK06038 149 ---DDEKGEAELK------------EGKRFVKEWHGAADGRIKVMYGPHAPYTCSEEFLSKVKKLANKDGVGIHIHVLET 213 (430)
T ss_pred ---CccchHHHHH------------HHHHHHHHhcCCCCCceEEEEeCCcCccCCHHHHHHHHHHHHHcCCcEEEEcCCC
Confidence 0000111111 3445556665444567777788899999999999999999999999999999998
Q ss_pred hhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCCCcHHHHHHCCCc
Q 011766 259 PYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADIC 337 (478)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~gv~ 337 (478)
..+........+. .+++.+...+.++++.++.||.++++++++++++.|+.+++||.+++.. .+..|++++++.|++
T Consensus 214 ~~~~~~~~~~~G~--~~i~~l~~~g~l~~r~~~~H~~~l~~~~~~~la~~g~~v~~~P~~n~~~~~~~~p~~~~~~~Gv~ 291 (430)
T PRK06038 214 EAELNQMKEQYGM--CSVNYLDDIGFLGPDVLAAHCVWLSDGDIEILRERGVNVSHNPVSNMKLASGIAPVPKLLERGVN 291 (430)
T ss_pred HHHHHHHHHHhCC--CHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHhcCCEEEEChHHhhhhccCCCCHHHHHHCCCe
Confidence 8766655554433 3788899999999999999999999999999999999999999998876 678999999999999
Q ss_pred EEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEE
Q 011766 338 VSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVV 417 (478)
Q Consensus 338 v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~ 417 (478)
+++|||+...+.+.+++.+|+.+....... .....+++++++|+++|.+||+++|++ .|+|++|+.||||++
T Consensus 292 v~lGtD~~~~~~~~d~~~~~~~a~~~~~~~------~~~~~~~~~~~al~~aT~~gA~~lg~~--~G~l~~G~~ADlvvl 363 (430)
T PRK06038 292 VSLGTDGCASNNNLDMFEEMKTAALLHKVN------TMDPTALPARQVLEMATVNGAKALGIN--TGMLKEGYLADIIIV 363 (430)
T ss_pred EEEeCCCCccCCCcCHHHHHHHHHHHhhhc------cCCCCcCCHHHHHHHHhHHHHHHhCCC--CCccCCCcccCEEEE
Confidence 999999866656788999998876654321 012246899999999999999999994 599999999999999
Q ss_pred cCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHHHHHH
Q 011766 418 DPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKL 474 (478)
Q Consensus 418 d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~ 474 (478)
|.+.....|..||...+++......|..||++|+++|++|+++.++..++.++.++.
T Consensus 364 d~~~~~~~p~~~~~~~~v~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~~~~~~~~ 420 (430)
T PRK06038 364 DMNKPHLTPVRDVPSHLVYSASGSDVDTTIVDGRILMEDYKVLCMDEQDVMEDAKKA 420 (430)
T ss_pred eCCCCccCCCCChHHheeEeCCCCceeEEEECCEEEEECCeECCCCHHHHHHHHHHH
Confidence 999776778888888887777778999999999999999999999999888776653
|
|
| >PRK06380 metal-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-52 Score=405.57 Aligned_cols=410 Identities=32% Similarity=0.510 Sum_probs=333.0
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcccc
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~ 98 (478)
|+++|+|++|++.++. ..+.+++|+|++|+|++||+... .++++||++|++|+|||||+|+|+.+..+++..
T Consensus 1 m~~li~~~~v~~~~~~-~~~~~~~v~i~~g~I~~ig~~~~-------~~~~viD~~g~~v~PG~Vd~H~Hl~~~~~rg~~ 72 (418)
T PRK06380 1 MSILIKNAWIVTQNEK-REILQGNVYIEGNKIVYVGDVNE-------EADYIIDATGKVVMPGLINTHAHVGMTASKGLF 72 (418)
T ss_pred CeEEEEeeEEEECCCC-ceeeeeeEEEECCEEEEecCCCC-------CCCEEEECCCCEEccCEEeeccCCCccccCCcc
Confidence 4579999999987543 35568999999999999997532 245899999999999999999999999888887
Q ss_pred CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCHHHHHHHHHHhCCeEEEecccccCCCCCC
Q 011766 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLP 178 (478)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 178 (478)
.+.++.+|+.. .++....+++++.+......+.+++++||||+.|+.. ......+.....|++.+.+...++....
T Consensus 73 ~~~~l~~~~~~-~~~~~~~~~~e~~~~~~~~~~~e~l~~G~Tt~~d~~~-~~~~~~~a~~~~G~r~~~~~~~~~~~~~-- 148 (418)
T PRK06380 73 DDVDLEEFLMK-TFKYDSKRTREGIYNSAKLGMYEMINSGITAFVDLYY-SEDIIAKAAEELGIRAFLSWAVLDEEIT-- 148 (418)
T ss_pred cCCCHHHHHHH-HHhhhhcCCHHHHHHHHHHHHHHHHhcCCeEEEcccc-ChHHHHHHHHHhCCeEEEecccccCCcc--
Confidence 77888999986 6777788899988888889999999999999999753 3456677889999999887665542110
Q ss_pred CcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCC
Q 011766 179 ASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEI 258 (478)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~ 258 (478)
. ....... ...+.++++.. ...++..+++++.+.++++.+++++++|+++|+++++|+.+.
T Consensus 149 ----~-~~~~~~~------------~~~~~~~~~~~--~~~v~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~ 209 (418)
T PRK06380 149 ----T-QKGDPLN------------NAENFIREHRN--EELVTPSIGVQGIYVANDETYLKAKEIAEKYDTIMHMHLSET 209 (418)
T ss_pred ----c-ccchHHH------------HHHHHHHHhcC--CCCeEEEEECCCCccCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 0 0000011 34445555432 356777888999999999999999999999999999999987
Q ss_pred hhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-c-CCCcHHHHHHCCC
Q 011766 259 PYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-L-GFAPIKEMLHADI 336 (478)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~-~~~~~~~~~~~gv 336 (478)
..+........+ ..+++.+...+.+..+.++.|+.++++++++++++.|+.+++||.++++. . +..|+++++++|+
T Consensus 210 ~~~~~~~~~~~g--~~~ie~~~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P~sn~~l~~~g~~p~~~~~~~Gv 287 (418)
T PRK06380 210 RKEVYDHVKRTG--ERPVEHLEKIGFLNSKLIAAHCVWATYHEIKLLSKNGVKVSWNSVSNFKLGTGGSPPIPEMLDNGI 287 (418)
T ss_pred HHHHHHHHHHhC--CCHHHHHHHCCCCCCCeEEEEeecCCHHHHHHHHHcCCEEEECHHHHHhhccCCCCcHHHHHHCCC
Confidence 654433333333 44788999999999999999999999999999999999999999999876 3 6899999999999
Q ss_pred cEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEE
Q 011766 337 CVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVV 416 (478)
Q Consensus 337 ~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv 416 (478)
++++|||+...+++.+++.+|+.+....+... .....++++++|+++|.++|++||+ +.|+|++||.||||+
T Consensus 288 ~v~lGTD~~~~~~~~d~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~aT~~gA~~lg~--~~G~l~~G~~ADlvv 359 (418)
T PRK06380 288 NVTIGTDSNGSNNSLDMFEAMKFSALSVKNER------WDASIIKAQEILDFATINAAKALEL--NAGSIEVGKLADLVI 359 (418)
T ss_pred eEEEcCCCCcCCCCcCHHHHHHHHHHHhhhcc------CCCCcCCHHHHHHHHHHHHHHHhCC--CCCccCCCccCCEEE
Confidence 99999998665567889999987665432111 1122489999999999999999999 379999999999999
Q ss_pred EcCCCCCCCC--cCChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHH
Q 011766 417 VDPFSWPMVP--VHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQ 469 (478)
Q Consensus 417 ~d~~~~~~~~--~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~ 469 (478)
+|.+.+...| ..||+..+++.....+|..||++|++++++|++++++.++++.
T Consensus 360 ~d~~~~~~~p~~~~~~~~~lv~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~~~ 414 (418)
T PRK06380 360 LDARAPNMIPTRKNNIVSNIVYSLNPLNVDHVIVNGKILKENGRLNGFNPDEFID 414 (418)
T ss_pred EeCCCCccCCCCccChHHheeecCCCCceeEEEECCEEEEECCeECccCHHHHhh
Confidence 9998666666 4688998888888889999999999999999999999888764
|
|
| >PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=406.49 Aligned_cols=427 Identities=30% Similarity=0.478 Sum_probs=335.4
Q ss_pred eEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccc--c
Q 011766 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI--A 98 (478)
Q Consensus 21 ~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~--~ 98 (478)
+++.|+.|+|+++...++.+++|+|+||+|++|++..+.+ ..+.++||++|++|+|||||+|+|+++...++. .
T Consensus 4 ~i~~~~~v~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~----~~~~~vID~~g~~v~PGlVn~H~H~~~~~~~g~~~~ 79 (451)
T PRK08203 4 WIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGGALP----QPADEVFDARGHVVTPGLVNTHHHFYQTLTRALPAA 79 (451)
T ss_pred EEEeccEEEEeCCCceEeeccEEEEECCEEEEEeCCccCC----CCCCeEEeCCCCEEecceEeccccccchhccccccc
Confidence 3445579999887656789999999999999999864421 125689999999999999999999999888876 5
Q ss_pred CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc-------CHHHHHHHHHHhCCeEEEecccc
Q 011766 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-------HVSEMAKAVELLGLRACLVQSTM 171 (478)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~ 171 (478)
.+.++.+|+.. .++....+++++.+......+.+++++||||+++++.. ......+.....|++...+...+
T Consensus 80 ~~~~~~~~~~~-~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~ 158 (451)
T PRK08203 80 QDAELFPWLTT-LYPVWARLTPEMVRVATQTALAELLLSGCTTSSDHHYLFPNGLRDALDDQIEAAREIGMRFHATRGSM 158 (451)
T ss_pred CCCcHHHHHHH-HhHHHHhCCHHHHHHHHHHHHHHHHhcCcCEEEcceeeccccccchHHHHHHHHHHcCCeEEEeccee
Confidence 66788899865 35556678888888888999999999999999997522 14456778899999998776554
Q ss_pred cCCCCC---CCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCC-CCCeEEEEeccccccCCHHHHHHHHHHHHHc
Q 011766 172 DCGEGL---PASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAA-DGRIRIWFGIRQIMNATDRLLLETRDMAREF 247 (478)
Q Consensus 172 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 247 (478)
+..... ++........+..+ ...+.++++.... .+.++..++++..++++++.+.++++.|+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~l~------------~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~A~~~ 226 (451)
T PRK08203 159 SLGESDGGLPPDSVVEDEDAILA------------DSQRLIDRYHDPGPGAMLRIALAPCSPFSVSRELMRESAALARRL 226 (451)
T ss_pred ecCCccCCCCccccccCHHHHHH------------HHHHHHHHhcCCCCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHc
Confidence 332111 11000000111111 3444555543322 2578877888888899999999999999999
Q ss_pred CCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCCC
Q 011766 248 KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFA 326 (478)
Q Consensus 248 ~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~ 326 (478)
|+++++|+.+...+........+ ..+++.+...+.++++.++.|+.++++++++++++.|+.+++||.++.+. .+..
T Consensus 227 g~~v~~H~~e~~~~~~~~~~~~g--~~~~~~l~~~g~l~~~~~~~H~~~l~~~~~~~la~~g~~v~~~P~~~~~l~~~~~ 304 (451)
T PRK08203 227 GVRLHTHLAETLDEEAFCLERFG--MRPVDYLEDLGWLGPDVWLAHCVHLDDAEIARLARTGTGVAHCPCSNMRLASGIA 304 (451)
T ss_pred CCcEEEEeCCCHHHHHHHHHHhC--CCHHHHHHHcCCCCCCeEEEEEeCCCHHHHHHHHhcCCeEEECcHHhhhhccCCC
Confidence 99999999888776655554333 34678889999999999999999999999999999999999999998776 6789
Q ss_pred cHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCcccc
Q 011766 327 PIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSL 406 (478)
Q Consensus 327 ~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l 406 (478)
|++.+++.|+++++|||++..+...+++.+++.+........ ..+.+++.++++++|.+||+++|++ ++|+|
T Consensus 305 ~~~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~l~~~T~~~A~~lg~~-~~G~l 376 (451)
T PRK08203 305 PVRELRAAGVPVGLGVDGSASNDGSNLIGEARQALLLQRLRY-------GPDAMTAREALEWATLGGARVLGRD-DIGSL 376 (451)
T ss_pred CHHHHHHCCCeEEEecCCCccCCCcCHHHHHHHHHHHhhccc-------CCCCCCHHHHHHHHHHHHHHHhCCC-CCCCc
Confidence 999999999999999998665456789998887665443110 1235899999999999999999996 68999
Q ss_pred ccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHHHHHHh
Q 011766 407 EAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLL 475 (478)
Q Consensus 407 ~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~ 475 (478)
++|+.|||+|+|.+.+...+..||+..+++.. ..+|..||++|++||++|++++.+..++.+..+++.
T Consensus 377 ~~G~~ADlvv~d~~~~~~~~~~~p~~~l~~~~-~~~v~~v~v~G~~v~~~~~~~~~d~~~~~~~~~~~~ 444 (451)
T PRK08203 377 APGKLADLALFDLDELRFAGAHDPVAALVLCG-PPRADRVMVGGRWVVRDGQLTTLDLAALIARHRAAA 444 (451)
T ss_pred CCCCccCEEEEcCCccccCCccChHHHHHccC-CCCccEEEECCEEEEECCcccCCCHHHHHHHHHHHH
Confidence 99999999999999776666778887776543 578999999999999999999999998887776653
|
|
| >PRK08393 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-51 Score=400.01 Aligned_cols=419 Identities=32% Similarity=0.538 Sum_probs=341.3
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcccc
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~ 98 (478)
++++|+|++|+++++ ....+++|+|+||+|++|++.... ++.++||+.|++|+|||||+|+|+.+..+++..
T Consensus 1 ~~~~i~~~~i~~~~~--~~~~~~~i~i~~g~I~~v~~~~~~------~~~~~id~~~~~v~Pg~vd~H~H~~~~~~rg~~ 72 (424)
T PRK08393 1 MSILIKNGYVIYGEN--LKVIRADVLIEGNKIVEVKRNINK------PADTVIDASGSVVSPGFINAHTHSPMVLLRGLA 72 (424)
T ss_pred CeEEEECcEEEeCCC--CceecceEEEECCEEEEecCCCCC------CCCeEEeCCCCEEccCeeeeccCcchHhhhhcc
Confidence 468999999998653 345678999999999999874321 245799999999999999999999999888888
Q ss_pred CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCHHHHHHHHHHhCCeEEEecccccCCCCCC
Q 011766 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLP 178 (478)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 178 (478)
.+.++.+|+....++....+++++.+......+.+++++|+||+.++. .......+.....|++.+......+... +
T Consensus 73 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~-~~~~~~~~a~~~~G~r~~~~~~~~~~~~--~ 149 (424)
T PRK08393 73 DDVPLMEWLQNYIWPRERKLKRKDIYWGAYLGLLEMIKSGTTTFVDMY-FHMEEVAKATLEVGLRGYLSYGMVDLGD--E 149 (424)
T ss_pred CCCCHHHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCceEEeccc-cCHHHHHHHHHHhCCeEEEeceEecCCC--c
Confidence 888999999888888777788888888889999999999999999975 3456677788889999877644332110 0
Q ss_pred CcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCC
Q 011766 179 ASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEI 258 (478)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~ 258 (478)
......+. ...+.++.+.....+.+...++++..+.++++.+++++++|+++|+++++|+.+.
T Consensus 150 -----~~~~~~l~------------~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~ 212 (424)
T PRK08393 150 -----EKREKEIK------------ETEKLMEFIEKLNSPRVHFVFGPHAPYTCSLALLKWVREKAREWNKLITIHLSET 212 (424)
T ss_pred -----cchHHHHH------------HHHHHHHHHhcCCCCceEEEEeCCcCCcCCHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 00011111 3333444444444456776678888888999999999999999999999999998
Q ss_pred hhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCCCcHHHHHHCCCc
Q 011766 259 PYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADIC 337 (478)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~gv~ 337 (478)
..+.......++ ..++..+...+.++++.++.||.++++++++++++.|+.+++||.++.+. .+..|+++++++|++
T Consensus 213 ~~~~~~~~~~~g--~~~~~~l~~~G~l~~~~~~~H~~~l~~~~l~~la~~g~~v~~~P~sn~~lg~g~~~~~~~~~~Gv~ 290 (424)
T PRK08393 213 MDEIKQIREKYG--KSPVVLLDEIGFLNEDVIAAHGVWLSSRDIRILASAGVTVAHNPASNMKLGSGVMPLRKLLNAGVN 290 (424)
T ss_pred HHHHHHHHHHhC--cCHHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHhcCCEEEECHHHHHhhccCCCCHHHHHHCCCc
Confidence 877776666554 34788899999999999999999999999999999999999999998876 678999999999999
Q ss_pred EEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEE
Q 011766 338 VSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVV 417 (478)
Q Consensus 338 v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~ 417 (478)
+++|||+...+.+.+++++++.+........ .....++++++++++|.+||+.+|++ .|+|++|+.||||++
T Consensus 291 v~lGtD~~~~~~~~d~~~~~~~a~~~~~~~~------~~~~~~~~~~al~~aT~~~A~~lg~~--~G~l~~G~~ADlvvl 362 (424)
T PRK08393 291 VALGTDGAASNNNLDMLREMKLAALLHKVHN------LDPTIADAETVFRMATQNGAKALGLK--AGVIKEGYLADIAVI 362 (424)
T ss_pred EEEecCCCccCCchhHHHHHHHHHHHHhhcc------CCCCcCCHHHHHHHHHHHHHHHhCCC--CCccCCCCccCEEEE
Confidence 9999998665556789999987764432110 11123689999999999999999994 599999999999999
Q ss_pred cCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHHHHHHh
Q 011766 418 DPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLL 475 (478)
Q Consensus 418 d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~ 475 (478)
|.+.....|..||+..+++.....+|..|||+|+++|++|+++..+.+++.++.+++.
T Consensus 363 d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~~~~~~~~~ 420 (424)
T PRK08393 363 DFNRPHLRPINNPISHLVYSANGNDVETTIVDGKIVMLDGEVLTLDEEKILDKFLKVI 420 (424)
T ss_pred eCCCCCcCCCCChHHHeeeeCCCCCeeEEEECCEEEEECCeECCCCHHHHHHHHHHHH
Confidence 9997777788899998888777889999999999999999999999999998877664
|
|
| >PRK06151 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=402.03 Aligned_cols=430 Identities=24% Similarity=0.323 Sum_probs=326.1
Q ss_pred ceeEEEecEEEeeCCCC-ceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccc
Q 011766 19 STMILHNAVIVTMDKES-RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~-~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~ 97 (478)
|+++|+|+.|++.++.. .++++++|+|+||+|++||+... ....++||++|++|+|||||+|+|+.+......
T Consensus 1 ~~~li~~~~v~~~d~~~~~~~~~~~VlVe~g~I~~Vg~~~~------~~~~~viD~~g~~vlPGlVdaH~Hl~~~~~~~~ 74 (488)
T PRK06151 1 MRTLIKARWVLGFDDGDHRLLRDGEVVFEGDRILFVGHRFD------GEVDRVIDAGNALVGPGFIDLDALSDLDTTILG 74 (488)
T ss_pred CeEEEEccEEEEEcCCCCeEEeCcEEEEECCEEEEecCCCC------CCCCeEEeCCCCEEecCEEeeecccchhhhhcc
Confidence 36899999999887653 46789999999999999997432 124579999999999999999999865332221
Q ss_pred cCCCCchHHhhhccccc-------cCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc----------CHHHHHHHHHHh
Q 011766 98 ADDVDLMTWLHDRIWPY-------ESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ----------HVSEMAKAVELL 160 (478)
Q Consensus 98 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~----------~~~~~~~~~~~~ 160 (478)
.. +...|+.+..|+. ...+++++.+......+.+++++||||++|+++. ......+.....
T Consensus 75 ~~--~~~~~~~~~~~~~~~~~~~~~~~~t~e~~~~~a~~~~~e~L~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~a~~~~ 152 (488)
T PRK06151 75 LD--NGPGWAKGRVWSRDYVEAGRREMYTPEELAFQKRYAFAQLLRNGITTAMPIASLFYRQWAETYAEFAAAAEAAGRL 152 (488)
T ss_pred cc--cchhHHhcccCchhhhhcchhhcCCHHHHHHHHHHHHHHHHhcCeeEEehhhhhhccccccccchHHHHHHHHHHc
Confidence 11 1225654444432 1357888888888999999999999999986432 124456667788
Q ss_pred CCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHH
Q 011766 161 GLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLET 240 (478)
Q Consensus 161 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (478)
|++.+.+...+..+...... ...... .. .........+..+.++++...+.+.++.+..++..+.++++.+.++
T Consensus 153 GiR~~~~~~~~~~~~~~~~~--g~~~~~-~~---~~~~~~~~~~~~~~v~~~~~~g~~~i~~~~~p~~~~~~s~e~l~~~ 226 (488)
T PRK06151 153 GLRVYLGPAYRSGGSVLEAD--GSLEVV-FD---EARGLAGLEEAIAFIKRVDGAHNGLVRGMLAPDRIETCTVDLLRRT 226 (488)
T ss_pred CCeEEecchhccCccccccC--CCCCcc-cc---chhHHHHHHHHHHHHHHhhcccCCceEEEEcCCCCCCCCHHHHHHH
Confidence 99987775443322111000 000000 00 0000000114556667766666677888888888888999999999
Q ss_pred HHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCCh---------hHHHHHHhcCCe
Q 011766 241 RDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH---------TEIGLLSRAGVK 311 (478)
Q Consensus 241 ~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~---------~~~~~~~~~~~~ 311 (478)
+++|+++|+++++|+.+...+.+.+....+ ...++.+...+.++.++++.||.++++ ++++++++.|+.
T Consensus 227 ~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g--~~~~~~~~~~g~l~~r~~l~H~~~l~~~~~~~~~~~~~~~~la~~g~~ 304 (488)
T PRK06151 227 AAAARELGCPVRLHCAQGVLEVETVRRLHG--TTPLEWLADVGLLGPRLLIPHATYISGSPRLNYSGGDDLALLAEHGVS 304 (488)
T ss_pred HHHHHHCCCcEEEEECCchHHHHHHHHHcC--CCHHHHHHHcCCCCCCcEEEEEEEcCCccccccCCHHHHHHHHhcCCE
Confidence 999999999999999887666555544333 346788888999999999999999999 999999999999
Q ss_pred EEECccchhhc-cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHh
Q 011766 312 VSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMAT 390 (478)
Q Consensus 312 ~~~~p~~~~~~-~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T 390 (478)
+++||..+.+. .+..|++++++.|+++++|||+.+ .+++..++.+........ .....++++++++++|
T Consensus 305 v~~~P~~~~~~g~~~~p~~~l~~~Gv~v~lGtD~~~----~~~~~~~~~~~~~~~~~~------~~~~~~~~~~al~~aT 374 (488)
T PRK06151 305 IVHCPLVSARHGSALNSFDRYREAGINLALGTDTFP----PDMVMNMRVGLILGRVVE------GDLDAASAADLFDAAT 374 (488)
T ss_pred EEECchhhhhhccccccHHHHHHCCCcEEEECCCCC----ccHHHHHHHHHHHHHHhc------CCCCCCCHHHHHHHHH
Confidence 99999887765 678999999999999999999732 478888877664432110 0123489999999999
Q ss_pred HHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHH
Q 011766 391 INGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQL 470 (478)
Q Consensus 391 ~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~ 470 (478)
.+||+++|+++ +|+|++|+.|||+|+|.+.+...|..||+..+++..+..+|..||++|++||++|+++.++.+++.+.
T Consensus 375 ~~~A~~lg~~~-~G~I~~G~~ADlvvld~~~~~~~~~~d~~~~lv~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~~~~ 453 (488)
T PRK06151 375 LGGARALGRDD-LGRLAPGAKADIVVFDLDGLHMGPVFDPIRTLVTGGSGRDVRAVFVDGRVVMEDGRLPGVDLAALRAQ 453 (488)
T ss_pred HHHHHHhCCCC-CcccCCCCcCCEEEEeCCccccCCccCHHHHHHhhCCCCCccEEEECCEEEEECCeecCCCHHHHHHH
Confidence 99999999965 79999999999999999988888888999998888878899999999999999999999999999877
Q ss_pred HHHHh
Q 011766 471 QDKLL 475 (478)
Q Consensus 471 ~~~~~ 475 (478)
.++..
T Consensus 454 ~~~~~ 458 (488)
T PRK06151 454 AQQQF 458 (488)
T ss_pred HHHHH
Confidence 76543
|
|
| >PRK09228 guanine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-50 Score=389.93 Aligned_cols=408 Identities=24% Similarity=0.328 Sum_probs=319.3
Q ss_pred eeEEEecEEE-eeC-------CCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccch
Q 011766 20 TMILHNAVIV-TMD-------KESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (478)
Q Consensus 20 ~~~i~n~~I~-t~d-------~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~ 91 (478)
.++|++..++ +.. +...++++++|+|+||+|++||+..+....++ ..+++||++|++|+|||||+|+|+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~I~~g~I~~Vg~~~~~~~~~~-~~~~viD~~g~lv~PGlVn~H~H~~~ 81 (433)
T PRK09228 3 TKAYRGRLLHFTADPAEVDDEDALRYIEDGLLLVEDGRIVAAGPYAELRAQLP-ADAEVTDYRGKLILPGFIDTHIHYPQ 81 (433)
T ss_pred eEEEEEEEEccCCCccccCCCCcEEEECCeEEEEECCEEEEEcChHHhhhhcC-CCCeEEeCCCCEEecceecccccccc
Confidence 4677766666 223 23457789999999999999998654322222 13589999999999999999999988
Q ss_pred hhhccccCCCCchHHhhhccccccCCC-ChHHHHHHHHHHHHHHHhcCcceeecCCccC---HHHHHHHHHHhCCeEEEe
Q 011766 92 QLAKGIADDVDLMTWLHDRIWPYESNM-TEEDSYISTLLCGIELIHSGVTCFAEAGGQH---VSEMAKAVELLGLRACLV 167 (478)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~---~~~~~~~~~~~g~~~~~~ 167 (478)
+.+++. .+.++.+|+....|+.+..+ +++..+......+.+++++||||+.+++... .....+.....|++.+.+
T Consensus 82 ~~~~g~-~~~~l~~wl~~~~~~~e~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~a~~~~GiR~~~~ 160 (433)
T PRK09228 82 TDMIAS-YGEQLLDWLNTYTFPEERRFADPAYAREVAEFFLDELLRNGTTTALVFGTVHPQSVDALFEAAEARNMRMIAG 160 (433)
T ss_pred hhhccC-CchHHHHHHHhhhhHHHHHhCCHHHHHHHHHHHHHHHHhCCceEEEeccccCHHHHHHHHHHHHHcCCeEEee
Confidence 877663 23467889987777766543 5556666777788999999999999975443 345567778899999887
Q ss_pred cccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHc
Q 011766 168 QSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREF 247 (478)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 247 (478)
...++.. .+..+ ........+ ...++++++.. .+.+...+.++..++++++.++++.++|+++
T Consensus 161 ~~~~~~~--~~~~~-~~~~~~~l~------------~~~~~~~~~~~--~~~~~~~~~p~~~~t~s~~~l~~~~~lA~~~ 223 (433)
T PRK09228 161 KVLMDRN--APDGL-RDTAESGYD------------DSKALIERWHG--KGRLLYAITPRFAPTSTPEQLEAAGALAREH 223 (433)
T ss_pred eeeecCC--CCccc-ccCHHHHHH------------HHHHHHHHHhC--CCCceEEEECCcCCcCCHHHHHHHHHHHHHC
Confidence 6555431 11110 001111111 34455566544 2467777889999999999999999999998
Q ss_pred -CCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCC
Q 011766 248 -KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGF 325 (478)
Q Consensus 248 -~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~ 325 (478)
++++++|+.+...+...+...++....+++.++..+.++++.++.||.++++++++++++.|+.+++||.+++.+ .+.
T Consensus 224 ~~~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~l~~~G~l~~~~~~~H~~~l~~~~~~~la~~g~~v~~~P~sn~~lg~g~ 303 (433)
T PRK09228 224 PDVWIQTHLSENLDEIAWVKELFPEARDYLDVYERYGLLGPRAVFAHCIHLEDRERRRLAETGAAIAFCPTSNLFLGSGL 303 (433)
T ss_pred CCCceEEeecCChhHHHHHHHHcCCCCCHHHHHHHcCCCCCCeEEEeccCCCHHHHHHHHHcCCeEEECCccHHhhcCCC
Confidence 999999999998888777776665555788999999999999999999999999999999999999999999876 688
Q ss_pred CcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccc
Q 011766 326 APIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGS 405 (478)
Q Consensus 326 ~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~ 405 (478)
.|+++++++|+++++|||+.. +++.+++++|+.+....+. ...+++.+++|+++|.+||+++|+++++|+
T Consensus 304 ~~~~~~~~~Gv~v~lGtD~~~-~~~~d~~~~~~~~~~~~~~---------~~~~~~~~~~l~~aT~~~A~~lg~~~~~G~ 373 (433)
T PRK09228 304 FDLKRADAAGVRVGLGTDVGG-GTSFSMLQTMNEAYKVQQL---------QGYRLSPFQAFYLATLGGARALGLDDRIGN 373 (433)
T ss_pred cCHHHHHHCCCeEEEecCCCC-CCCCCHHHHHHHHHHHhhc---------ccCCCCHHHHHHHHhHHHHHHhCCCCCCcc
Confidence 999999999999999999854 3567899999887655431 123589999999999999999999878899
Q ss_pred cccCccccEEEEcCCCCC-CC-------CcCChhhhhhhccCCCCeeEEEEccEEEEEC
Q 011766 406 LEAGKKADMVVVDPFSWP-MV-------PVHDRITSLVYCMRTENVVSVMCNGQWVMKN 456 (478)
Q Consensus 406 l~~G~~ADlvv~d~~~~~-~~-------~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~ 456 (478)
|++||.||||++|.+... .. +..||+..+++......|..|||+|++|+++
T Consensus 374 l~~Gk~ADlvv~d~~~~~~~~~~~~~~~~~~d~~~~lv~~~~~~~V~~v~VdG~~v~~~ 432 (433)
T PRK09228 374 LAPGKEADFVVLDPAATPLLALRTARAESLEELLFALMTLGDDRAVAETYVAGRPVYRR 432 (433)
T ss_pred cCCCCCCCEEEEcCCCCccccchhcccCCHHHHHHHHhhcCCccceeEEEECCEEeccC
Confidence 999999999999987532 22 2357899999999999999999999999864
|
|
| >cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-49 Score=389.72 Aligned_cols=410 Identities=41% Similarity=0.662 Sum_probs=317.6
Q ss_pred eEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCC
Q 011766 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (478)
Q Consensus 21 ~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~ 100 (478)
++|+|++|+++++ .+.+++++|+|+||||++|++..+.+ . ....++||++|++|+|||||+|+|+.++..++....
T Consensus 1 ~~i~~~~v~~~~~-~~~~~~~~v~i~~g~I~~ig~~~~~~--~-~~~~~viD~~g~~i~PGlid~H~Hl~~~~~~~~~~~ 76 (411)
T cd01298 1 ILIRNGTIVTTDP-RRVLEDGDVLVEDGRIVAVGPALPLP--A-YPADEVIDAKGKVVMPGLVNTHTHLAMTLLRGLADD 76 (411)
T ss_pred CeEEeeEEEEeCC-cceeecceEEEECCEEEEecCccccc--c-CCcCeEEeCCCCEEccCccccccchhhHHhhcccCC
Confidence 4799999998765 46778999999999999999764321 0 135689999999999999999999988777665555
Q ss_pred CCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCHHHHHHHHHHhCCeEEEecccccCCCCCCCc
Q 011766 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPAS 180 (478)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 180 (478)
.++.+|+....+......+.++.+......+.+++++||||+++++........+.....|++.......+......
T Consensus 77 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~~~~--- 153 (411)
T cd01298 77 LPLMEWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTTTFADMYFFYPDAVAEAAEELGIRAVLGRGIMDLGTED--- 153 (411)
T ss_pred CCHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHHHHhcCccEEECccccchHHHHHHHHHhCCeEEEEcceecCCCcc---
Confidence 66889988777766656677777777778888999999999999865433445556667788877655443321110
Q ss_pred ccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChh
Q 011766 181 WAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 260 (478)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~ 260 (478)
........+ +..+.++++...+.+.+++..+++..+..+++.+.++++.|+++|+++.+|+.+...
T Consensus 154 --~~~~~~~~~------------~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~ 219 (411)
T cd01298 154 --VEETEEALA------------EAERLIREWHGAADGRIRVALAPHAPYTCSDELLREVAELAREYGVPLHIHLAETED 219 (411)
T ss_pred --cccHHHHHH------------HHHHHHHHhcCCCCCceEEEEeCCCCccCCHHHHHHHHHHHHHcCCcEEEEecCCHH
Confidence 000111111 444556665554566778778877777789999999999999999999999988776
Q ss_pred hhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCCCcHHHHHHCCCcEE
Q 011766 261 ENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVS 339 (478)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~gv~v~ 339 (478)
..+......+. ..++.+...+.++.+..+.|+.++++++++++++.|+.+++||..+... ....|+++++++|++++
T Consensus 220 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~H~~~l~~~~~~~l~~~gi~~~~~p~~~~~~~~~~~~~~~~~~~Gv~~~ 297 (411)
T cd01298 220 EVEESLEKYGK--RPVEYLEELGLLGPDVVLAHCVWLTDEEIELLAETGTGVAHNPASNMKLASGIAPVPEMLEAGVNVG 297 (411)
T ss_pred HHHHHHHHhCC--CHHHHHHHcCCCCCCeEEEEecCCCHHHHHHHHHcCCeEEEChHHhhhhhhCCCCHHHHHHCCCcEE
Confidence 55544443332 2556666777778888999999999999999999999999999988765 46789999999999999
Q ss_pred EcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcC
Q 011766 340 LGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDP 419 (478)
Q Consensus 340 ~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~ 419 (478)
+|||++....+.+++.+++.+....... ...+++++++++++++|.|||+++|++ ++|+|++|+.|||||+|.
T Consensus 298 ~GsD~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~al~~~T~~~A~~lg~~-~~G~i~~G~~ADlvv~d~ 370 (411)
T cd01298 298 LGTDGAASNNNLDMFEEMRLAALLQKLA------HGDPTALPAEEALEMATIGGAKALGLD-EIGSLEVGKKADLILIDL 370 (411)
T ss_pred EeCCCCccCCCcCHHHHHHHHHHHhccc------cCCCCcCCHHHHHHHHHhhHHHHhCCc-cCCCcCCCccCCEEEEeC
Confidence 9999876545678888887765543211 112236999999999999999999997 789999999999999999
Q ss_pred CCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeee
Q 011766 420 FSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKIL 460 (478)
Q Consensus 420 ~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~ 460 (478)
+.+...+.+|+++.+.+.....+|..||++|++||++|+++
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~G~~v~~~~~~~ 411 (411)
T cd01298 371 DGPHLLPVHDPISHLVYSANGGDVDTVIVNGRVVMEDGELL 411 (411)
T ss_pred CCCccCCccchhhHheEecCCCCeeEEEECCEEEEECCEeC
Confidence 97777777788887766666789999999999999999874
|
Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD. |
| >cd01303 GDEase Guanine deaminase (GDEase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=386.95 Aligned_cols=402 Identities=25% Similarity=0.363 Sum_probs=317.2
Q ss_pred EEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCCCCchHHh
Q 011766 28 IVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWL 107 (478)
Q Consensus 28 I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~ 107 (478)
..|+|....++++++|+|+||+|++||+..+.....+ .++++||++|++|+|||||+|+|+.+..+++...+.++.+|+
T Consensus 14 ~~~~d~~~~~~~~g~V~v~~g~I~~vG~~~~~~~~~~-~~~~viD~~g~~v~PGlVn~H~Hl~~~~~rg~~~~~~l~~wl 92 (429)
T cd01303 14 LELVEDALRVVEDGLIVVVDGNIIAAGAAETLKRAAK-PGARVIDSPNQFILPGFIDTHIHAPQYANIGSGLGEPLLDWL 92 (429)
T ss_pred ccccCCcEEEECCeEEEEECCEEEEeCchhhhhhhcC-CCceEEcCCCCEEecceeeeeecccccccccccCCCcHHHHH
Confidence 4456777788899999999999999998654321111 246899999999999999999999988888887788899999
Q ss_pred hhccccccCC-CChHHHHHHHHHHHHHHHhcCcceeecCCccC---HHHHHHHHHHhCCeEEEecccccCCCCCCCcccc
Q 011766 108 HDRIWPYESN-MTEEDSYISTLLCGIELIHSGVTCFAEAGGQH---VSEMAKAVELLGLRACLVQSTMDCGEGLPASWAV 183 (478)
Q Consensus 108 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 183 (478)
....|+.+.. .+.++.+......+.+++++||||+++++... .....+.....|++.+.+...++... +..+ .
T Consensus 93 ~~~~~~~e~~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~~~~~--~~~~-~ 169 (429)
T cd01303 93 ETYTFPEEAKFADPAYAREVYGRFLDELLRNGTTTACYFATIHPESTEALFEEAAKRGQRAIAGKVCMDRNA--PEYY-R 169 (429)
T ss_pred HhhhhHHHHhcCCHHHHHHHHHHHHHHHHhCCceEEEeecccChhHHHHHHHHHHHhCCeEEEeeeeecCCC--Cccc-c
Confidence 8777776654 35556666677788999999999999976432 34566777889999988765543211 1000 0
Q ss_pred cCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcC-CceeEeccCChhhh
Q 011766 184 RTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFK-TGIHMHVAEIPYEN 262 (478)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~-~~v~~H~~~~~~~~ 262 (478)
........ ...++++++... .+.+...++++..++++++.++++.++|+++| +++++|+.+...+.
T Consensus 170 ~~~~~~~~------------~~~~~i~~~~~~-~~~v~~~~~p~~~~~~s~e~l~~~~~~A~~~g~~~v~~H~~e~~~e~ 236 (429)
T cd01303 170 DTAESSYR------------DTKRLIERWHGK-SGRVKPAITPRFAPSCSEELLAALGKLAKEHPDLHIQTHISENLDEI 236 (429)
T ss_pred cCHHHHHH------------HHHHHHHHHhCc-CCceEEEEecCcCCcCCHHHHHHHHHHHHHCCCCeEEEeeCCCHHHH
Confidence 00011111 344555665543 35677778889999999999999999999999 99999999888777
Q ss_pred HHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCCCcHHHHHHCCCcEEEc
Q 011766 263 QVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLG 341 (478)
Q Consensus 263 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~gv~v~~g 341 (478)
+.+....+....+++.+...+.++.+.++.||.++++++++++++.|+.+++||.+++.+ .+..|+++++++|+++++|
T Consensus 237 ~~~~~~~g~~~~p~~~l~~~G~l~~~~~l~H~~~l~~~~~~~l~~~g~~v~~~P~sn~~l~~g~~~~~~~~~~Gv~v~lG 316 (429)
T cd01303 237 AWVKELFPGARDYLDVYDKYGLLTEKTVLAHCVHLSEEEFNLLKERGASVAHCPTSNLFLGSGLFDVRKLLDAGIKVGLG 316 (429)
T ss_pred HHHHHHcCCCCCHHHHHHHCCCCCCCcEEEeCCCCCHHHHHHHHHcCCEEEECccchhhhccCCCCHHHHHHCCCeEEEe
Confidence 766665553356889999999999999999999999999999999999999999999876 6789999999999999999
Q ss_pred CCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCC
Q 011766 342 TDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFS 421 (478)
Q Consensus 342 sD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~ 421 (478)
||+... ++.+++++|+.+....+... .......+++.+++|+++|.+||+++|+++++|+|++||.||||++|.++
T Consensus 317 tD~~~~-~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~al~~aT~~gA~~lg~~~~~Gsle~Gk~ADlvvld~~~ 392 (429)
T cd01303 317 TDVGGG-TSFSMLDTLRQAYKVSRLLG---YELGGHAKLSPAEAFYLATLGGAEALGLDDKIGNFEVGKEFDAVVIDPSA 392 (429)
T ss_pred ccCCCC-CCccHHHHHHHHHHHHHhhc---cccCCcCCCCHHHHHHHHhhHHHHHcCCCCCCcCcCCCCccCEEEEcCCC
Confidence 998644 56789999987765432111 01113456899999999999999999998889999999999999999986
Q ss_pred CCCC-Cc-------CChhhhhhhccCCCCeeEEEEcc
Q 011766 422 WPMV-PV-------HDRITSLVYCMRTENVVSVMCNG 450 (478)
Q Consensus 422 ~~~~-~~-------~d~~~~~~~~~~~~~v~~v~v~G 450 (478)
+... |. .||+..+++......|..|||+|
T Consensus 393 ~~~~~p~~~~~~~~~d~~~~lV~~~~~~~V~~v~V~G 429 (429)
T cd01303 393 TPLLADRMFRVESLEEALFKFLYLGDDRNIREVYVAG 429 (429)
T ss_pred ccccccccccccchhhHHHHHeeeCCCCCeeEEEeCC
Confidence 5333 43 68999999999999999999998
|
Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool. |
| >PRK09229 N-formimino-L-glutamate deiminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-48 Score=381.95 Aligned_cols=420 Identities=19% Similarity=0.223 Sum_probs=313.9
Q ss_pred eeEEEecEEEeeCCCCceeecceEEEEC-CEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcccc
Q 011766 20 TMILHNAVIVTMDKESRVFRNGGVFVVQ-DRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (478)
Q Consensus 20 ~~~i~n~~I~t~d~~~~~~~~~~v~I~~-G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~ 98 (478)
.++++++.+. ++ +..+++|+|+| |+|++||+... + ..++.+|++|+|||||+|+|+.+..+++..
T Consensus 4 ~~~~~~~~~~--~~---~~~~~~v~i~~~grI~~vg~~~~-----~----~~~~~~g~~vlPGlVn~H~H~~~~~~rg~~ 69 (456)
T PRK09229 4 TLFAERALLP--DG---WARNVRLTVDADGRIAAVEPGAA-----P----AGAERLAGPVLPGMPNLHSHAFQRAMAGLT 69 (456)
T ss_pred hHHHHHhhCC--Cc---cccCcEEEEecCCeEEEecCCCC-----C----ccccccCcEEccCcccccccHhhHhhcCcc
Confidence 3455566553 32 56788999999 99999998532 0 123558999999999999999999998865
Q ss_pred CC-----CCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc--------------CHHHHHHHHHH
Q 011766 99 DD-----VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------------HVSEMAKAVEL 159 (478)
Q Consensus 99 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~--------------~~~~~~~~~~~ 159 (478)
.. .++.+|+. .+|+....+++++.+......+.+++++||||+.++... ......+..+.
T Consensus 70 ~~~~~~~~~l~~w~~-~~~~~~~~~~~e~~~~~a~~~~~e~L~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~e 148 (456)
T PRK09229 70 EVRGPPQDSFWSWRE-LMYRFALRLTPDQLEAIARQLYVEMLEAGYTSVGEFHYLHHDPDGTPYADPAEMALRIVAAARA 148 (456)
T ss_pred cccCCCCCChHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHHhhCCcEEEeeeeeccCCCCCccCChHHHHHHHHHHHHH
Confidence 42 45678875 456666778999999999999999999999999886421 12556778899
Q ss_pred hCCeEEEecccccCC-CC-CCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHH
Q 011766 160 LGLRACLVQSTMDCG-EG-LPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLL 237 (478)
Q Consensus 160 ~g~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 237 (478)
.|++..++...++.. .+ .++.. ....... ...-.....+++.+.+. ..+.+.+.++++..++++++.+
T Consensus 149 ~GiR~~~~~~~~~~~~~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~s~e~l 218 (456)
T PRK09229 149 AGIGLTLLPVLYAHSGFGGQPPNP---GQRRFIN-----DPDGFLRLLEALRRALA--ALPGARLGLAPHSLRAVTPDQL 218 (456)
T ss_pred cCCEEEeceeeeecCCCCCCCCch---hhccccc-----CHHHHHHHHHHHHHhhc--CCCceEEEEeCCCCCCCCHHHH
Confidence 999988776555432 10 11100 0000000 00000001112222222 2356788888999899999999
Q ss_pred HHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECcc
Q 011766 238 LETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPA 317 (478)
Q Consensus 238 ~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~ 317 (478)
++++++| ++|+++++|+.+...+........+ ..+++.+...+.++.++++.||.++++++++++++.|+.+++||.
T Consensus 219 ~~~~~~A-~~g~~i~~H~~e~~~e~~~~~~~~g--~~~~~~l~~~g~l~~~~~l~H~~~l~~~d~~~la~~g~~v~~~P~ 295 (456)
T PRK09229 219 AAVLALA-APDGPVHIHIAEQTKEVDDCLAWSG--ARPVEWLLDHAPVDARWCLVHATHLTDAETARLARSGAVAGLCPT 295 (456)
T ss_pred HHHHHHh-cCCCceEEEeCCCHHHHHHHHHHcC--CCHHHHHHHcCCCCCCeEEEeeccCCHHHHHHHHHcCCeEEECch
Confidence 9999999 9999999999887766666555443 346788888999999999999999999999999999999999999
Q ss_pred chhhc-cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCC-CCCCCCHHHHHHHHhHHHHH
Q 011766 318 SAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTT-DPAALPAETVLRMATINGAK 395 (478)
Q Consensus 318 ~~~~~-~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ls~~~al~~~T~~pA~ 395 (478)
+++.+ .+..|+++++++|+++++|||++. +.+++++|+.+....+........+. .++.++.+++|+++|.++|+
T Consensus 296 sn~~lg~g~~p~~~l~~~Gv~v~lGtD~~~---~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~ 372 (456)
T PRK09229 296 TEANLGDGIFPAVDYLAAGGRFGIGSDSHV---SIDLVEELRLLEYGQRLRDRRRNVLAAAAQPSVGRRLFDAALAGGAQ 372 (456)
T ss_pred hhhhhcCCCCCHHHHHHCCCeEEEecCCCC---CCCHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHHHHHHHHHH
Confidence 98876 688999999999999999999743 36889999887654432111111111 12468999999999999999
Q ss_pred HcCCCCCccccccCccccEEEEcCCCCCCCCc--CChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHHHHH
Q 011766 396 SVLWDNDIGSLEAGKKADMVVVDPFSWPMVPV--HDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDK 473 (478)
Q Consensus 396 ~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~--~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~ 473 (478)
++|+ .+|+|++||.|||||+|.+.+...+. .||...+++.....+|..|||+|++||++|+++ +.+++.+..++
T Consensus 373 alg~--~~GsLe~Gk~ADlvvld~~~~~~~~~~~~~~~~~lv~~~~~~~V~~v~V~G~~v~~~g~~~--d~~~i~~~~~~ 448 (456)
T PRK09229 373 ALGR--AIGGLAVGARADLVVLDLDHPALAGREGDALLDRWVFAGGDAAVRDVWVAGRWVVRDGRHR--LREAIAAAFRA 448 (456)
T ss_pred HhCC--CcCCcCCCCccCEEEEeCCCccccCCChhhHHHHHhhcCCCCCeeEEEECCEEEEECCccC--CHHHHHHHHHH
Confidence 9999 48999999999999999986544443 588889998888899999999999999999974 66777766665
Q ss_pred H
Q 011766 474 L 474 (478)
Q Consensus 474 ~ 474 (478)
.
T Consensus 449 ~ 449 (456)
T PRK09229 449 A 449 (456)
T ss_pred H
Confidence 4
|
|
| >TIGR02022 hutF formiminoglutamate deiminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=375.39 Aligned_cols=421 Identities=19% Similarity=0.235 Sum_probs=313.6
Q ss_pred EEEecEEEeeCCCCceeecceEEEE-CCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccC-
Q 011766 22 ILHNAVIVTMDKESRVFRNGGVFVV-QDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD- 99 (478)
Q Consensus 22 ~i~n~~I~t~d~~~~~~~~~~v~I~-~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~- 99 (478)
.++|+.+- + ++.++++|+|+ ||+|++||+.... ... .+..|++|+|||||+|+|+.+..+++...
T Consensus 5 ~~~~~~~~--~---~~~~~~~i~I~~~g~I~~vg~~~~~-----~~~---~~~~g~lvlPGfVn~H~H~~~~~~rg~~~~ 71 (455)
T TIGR02022 5 WAERALLP--D---GWAEGVRIAVAADGRILAIETGVPA-----APG---AERLSGPLLPGLANLHSHAFQRAMAGLAEV 71 (455)
T ss_pred hHHhccCC--C---ccccCceEEEecCCEEEEecCCCCc-----ccc---cccCCCEEccCCcccCcchhhHhhcCCccc
Confidence 45666663 3 25577899999 9999999985321 012 23458999999999999999999988753
Q ss_pred ----CCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc--------------CHHHHHHHHHHhC
Q 011766 100 ----DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------------HVSEMAKAVELLG 161 (478)
Q Consensus 100 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~--------------~~~~~~~~~~~~g 161 (478)
+.++.+|+. ..|+....+++++.+...+..+.+++++||||+.++... ......+.....|
T Consensus 72 ~~~~~~~l~~w~~-~~~~~~~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~e~G 150 (455)
T TIGR02022 72 AGSGGDSFWTWRE-LMYRFVDRLTPEQLQAIARQLYVEMLEAGFTRVGEFHYLHHAPDGTPYADPAEMAERIAAAAADAG 150 (455)
T ss_pred ccCCCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCEEEeeeeecccCCCccccchhhhHHHHHHHHHHhC
Confidence 236778975 456777778999999999999999999999999985311 1346677888999
Q ss_pred CeEEEecccccCCC--CCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHH
Q 011766 162 LRACLVQSTMDCGE--GLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLE 239 (478)
Q Consensus 162 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (478)
++..+....++... +.++.. ....... ...........+.+.+. ..+.+...++++..++++++.+.+
T Consensus 151 ~R~~~~~~~~~~~~~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~s~e~l~~ 220 (455)
T TIGR02022 151 IGLTLLPVFYAHSGFGGAAPNP---GQRRFIH-----DVERFARLVEVLRRELA--AQPAAVLGLAPHSLRAVTPEQLAA 220 (455)
T ss_pred CeEEeeeeeeecCCCCCCCCcc---cchhhcc-----CHHHHHHHHHHHHHHhc--cCCceEEEEecCCCCcCCHHHHHH
Confidence 99987765543211 011100 0000000 00000001112222221 124567778888888999999999
Q ss_pred HHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccch
Q 011766 240 TRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASA 319 (478)
Q Consensus 240 ~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~ 319 (478)
+.+ ++++|+++++|+.+...+........+ ..+++.+...+.+++++++.||.++++++++++++.|+.+++||.++
T Consensus 221 ~~~-a~~~g~~v~~H~~e~~~e~~~~~~~~G--~~~v~~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P~sn 297 (455)
T TIGR02022 221 VLQ-ASDRQAPVHIHVAEQQKEVDDCLAWSG--RRPVEWLLDHGPVDARWCLVHATHLTDEETALLARSGAVAGLCPTTE 297 (455)
T ss_pred HHH-HHhCCCceEEEECCChHHHHHHHHHhC--CCHHHHHHHcCCCCCCEEEEEeecCCHHHHHHHHHcCCeEEEChhhh
Confidence 999 889999999999988777666655544 34789999999999999999999999999999999999999999999
Q ss_pred hhc-cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCC-CCCCCCCHHHHHHHHhHHHHHHc
Q 011766 320 MRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGT-TDPAALPAETVLRMATINGAKSV 397 (478)
Q Consensus 320 ~~~-~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ls~~~al~~~T~~pA~~l 397 (478)
+.+ .+.+|+++|+++|+++++|||+.. +.+++++|+.+....+........+ .....++.+++|+++|.++|+++
T Consensus 298 ~~lg~g~~pi~~l~~~Gv~v~lGTD~~~---~~d~~~~m~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gAral 374 (455)
T TIGR02022 298 ANLGDGIFPAVDFVAAGGRFGIGSDSHV---VIDVAEELRQLEYGQRLRDRARNVLAAGPGPSVGRALYDAALLGGAQAL 374 (455)
T ss_pred ccccCCCCCHHHHHHCCCeEEEECCCCC---CCCHHHHHHHHHHHHHHHhcccccccCCcccchHHHHHHHHHHHHHHHh
Confidence 877 688999999999999999999643 4689999988766543211000000 11234778999999999999999
Q ss_pred CCCCCccccccCccccEEEEcCCCCCCCCc--CChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHHHHHHh
Q 011766 398 LWDNDIGSLEAGKKADMVVVDPFSWPMVPV--HDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLL 475 (478)
Q Consensus 398 gl~~~~G~l~~G~~ADlvv~d~~~~~~~~~--~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~ 475 (478)
|+ + +|+|++||.|||||+|.+.+...|. .||+..+++.....+|..|||+|++|+++|+++ ..+++.+...+++
T Consensus 375 g~-~-~GsLe~Gk~ADlvvld~~~~~~~~~~~~~~~~~lv~~~~~~~V~~v~V~G~~v~~~g~~~--~~~~~~~~~~~~~ 450 (455)
T TIGR02022 375 GL-A-TGGLRAGARADFLTLDGDHPYLAGALGDSLLDRWLFAGGGAAVRDVWVGGRWVVRDGRHA--LREEIGRAFARVL 450 (455)
T ss_pred CC-C-CCccCCCCCcCEEEEeCCCcccCCCCchhHHHHHhhcCCCCCccEEEECCEEEEECCccc--cHHHHHHHHHHHH
Confidence 99 3 8999999999999999885544443 578889999888899999999999999999996 5556888777765
Q ss_pred h
Q 011766 476 M 476 (478)
Q Consensus 476 ~ 476 (478)
.
T Consensus 451 ~ 451 (455)
T TIGR02022 451 R 451 (455)
T ss_pred H
Confidence 3
|
In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate. |
| >PRK08418 chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-47 Score=368.25 Aligned_cols=391 Identities=21% Similarity=0.249 Sum_probs=297.8
Q ss_pred eEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCC
Q 011766 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (478)
Q Consensus 21 ~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~ 100 (478)
++|+|+.|+|++++..++.+++|+|+ |+|++||+..+..... .+.++||++|++|+|||||+|+|+.++.+++...+
T Consensus 2 ~~i~~~~v~t~~~~~~~~~~~~v~v~-~~I~~ig~~~~~~~~~--~~~~vid~~g~~v~PG~Vn~H~H~~~~~~rg~~~~ 78 (408)
T PRK08418 2 KIIGASYIFTCDENFEILEDGAVVFD-DKILEIGDYENLKKKY--PNAKIQFFKNSVLLPAFINPHTHLEFSANKTTLDY 78 (408)
T ss_pred EEEEccEEEecCCCCceeeccEEEEC-CEEEEecCHHHHHhhC--CCCcEEecCCcEEccCccccccchhhhhhccccCC
Confidence 47899999988755567789999999 9999999854432211 23468999999999999999999999888887777
Q ss_pred CCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCHHHHHHHHHHhCCeEEEecccccCCCCCCCc
Q 011766 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPAS 180 (478)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 180 (478)
.++.+|+....++.+ .+..+..+........+++++||||+.+..... ...++....|++.......++.. ..
T Consensus 79 ~~~~~wl~~~~~~~~-~l~~~~~~~~~~~~~~E~l~~GtTtv~d~~~~~--~~~~a~~~~GiR~~~~~~~~~~~----~~ 151 (408)
T PRK08418 79 GDFIPWLGSVINHRE-DLLEKCKGALIQQAINEMLKSGVGTIGAISSFG--IDLEICAKSPLRVVFFNEILGSN----AS 151 (408)
T ss_pred CchHHHHHHHhhhhh-hcCHHHHHHHHHHHHHHHHhcCceEEEEeecch--hhHHHHHhcCCeEEEEeeeeCCC----cc
Confidence 788899977665543 456666667777889999999999999875432 23567788999997654332211 00
Q ss_pred ccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChh
Q 011766 181 WAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 260 (478)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~ 260 (478)
+ ...... ...+.++.......+.++..++++.+++++++.++++.++|+++|+++++|+.+...
T Consensus 152 ~----~~~~~~------------~~~~~~~~~~~~~~~~~~~~~aph~~~t~s~e~l~~~~~~A~~~~~~i~~H~~E~~~ 215 (408)
T PRK08418 152 A----VDELYQ------------DFLARFEESKKFKSKKFIPAIAIHSPYSVHPILAKKALQLAKKENLLVSTHFLESKA 215 (408)
T ss_pred c----hhhhHH------------HHHHHHHhhhcccCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCHH
Confidence 0 000000 111122222122345678889999999999999999999999999999999999988
Q ss_pred hhHHHhhhcCC--------------CCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCC
Q 011766 261 ENQVVMDTRKV--------------DHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGF 325 (478)
Q Consensus 261 ~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~ 325 (478)
+.+.+....+. ...+++++...+ ..+.++.||.++++++++++++.|+.+++||.+|+++ .+.
T Consensus 216 E~~~~~~~~G~~~~~~~~~~~~~~~~~~pv~~l~~~g--~~~~~~~H~~~~~~~di~~la~~g~~v~~cP~sn~~lg~g~ 293 (408)
T PRK08418 216 EREWLEESKGWFKKFFEKFLKEPKPLYTPKEFLELFK--GLRTLFTHCVYASEEELEKIKSKNASITHCPFSNRLLSNKA 293 (408)
T ss_pred HHHHHHhccCchhhhhhhhcccccccCCHHHHHHHhC--CCCeEEEecccCCHHHHHHHHHcCCcEEECHhHHHHhcCCC
Confidence 87766655441 124677777665 4678999999999999999999999999999999887 678
Q ss_pred CcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccc
Q 011766 326 APIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGS 405 (478)
Q Consensus 326 ~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~ 405 (478)
+|+++++++|+++++|||+..++++.+++++|+.+....+.. ....+.+++|+++|.++|+++|++ .|+
T Consensus 294 ~p~~~~~~~Gi~v~lGtD~~~~~~~~~~~~em~~~~~~~~~~---------~~~~~~~~~l~~aT~~gA~alg~~--~G~ 362 (408)
T PRK08418 294 LDLEKAKKAGINYSIATDGLSSNISLSLLDELRAALLTHANM---------PLLELAKILLLSATRYGAKALGLN--NGE 362 (408)
T ss_pred ccHHHHHhCCCeEEEeCCCCCCCCCcCHHHHHHHHHHHhccC---------CccccHHHHHHHHHHHHHHHhCCC--Ccc
Confidence 999999999999999999877667899999999877553311 011347899999999999999994 699
Q ss_pred cccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEE
Q 011766 406 LEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWV 453 (478)
Q Consensus 406 l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v 453 (478)
|++||.||||++|.+.....+..+|+..++ ....|..|||+|++|
T Consensus 363 l~~G~~ADlv~~d~~~~~~~~~~~~~~~~~---~~~~v~~v~v~G~~v 407 (408)
T PRK08418 363 IKEGKDADLSVFELPEECTKKEQLPLQFIL---HAKEVKKLFIGGKEV 407 (408)
T ss_pred ccCCCccCEEEEeCCCCCCChhHhHHHHHh---ccCccceEEECCEEc
Confidence 999999999999986422222334555443 246899999999987
|
|
| >TIGR02967 guan_deamin guanine deaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=371.47 Aligned_cols=385 Identities=24% Similarity=0.376 Sum_probs=302.9
Q ss_pred eeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCCCCchHHhhhccccccC
Q 011766 37 VFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYES 116 (478)
Q Consensus 37 ~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (478)
++++++|+|+||+|++||+..+....++ .+.++||++|++|+|||||+|+|+.+..+++ ....++.+|+....++.+.
T Consensus 3 ~~~~~~V~V~~g~I~~Vg~~~~~~~~~~-~~~~viD~~g~~v~PGlId~H~Hl~~~~~~g-~~~~~~~~~~~~~~~~~~~ 80 (401)
T TIGR02967 3 YFEDGLLVVENGRIVAVGDYAELKETLP-AGVEIDDYRGHLIMPGFIDTHIHYPQTEMIA-SYGEQLLEWLEKYTFPTEA 80 (401)
T ss_pred EEeceEEEEECCEEEEecCcchhhhccC-CCCeEEeCCCCEEecceeecccCchhhhhcc-cCCchHHHHHhhCcCcccc
Confidence 4578899999999999998644322122 2458999999999999999999998877776 4456678898776666555
Q ss_pred CC-ChHHHHHHHHHHHHHHHhcCcceeecCCccCH---HHHHHHHHHhCCeEEEecccccCCCCCCCcccccCCcccCCC
Q 011766 117 NM-TEEDSYISTLLCGIELIHSGVTCFAEAGGQHV---SEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQP 192 (478)
Q Consensus 117 ~~-~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (478)
.+ +++..+......+.+++++||||+++++.... ....+.....|++.+.+...++.. .+... .........
T Consensus 81 ~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~d~~--~~~~~-~~~~~~~~~- 156 (401)
T TIGR02967 81 RFADPDHAEEVAEFFLDELLRNGTTTALVFATVHPESVDALFEAALKRGMRMIAGKVLMDRN--APDYL-RDTAESSYD- 156 (401)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCcEEEeccccCHHHHHHHHHHHHHCCCeEEEeeeeecCC--CCccc-ccCHHHHHH-
Confidence 43 55566667777888999999999999875432 345677889999987766554321 11100 000011111
Q ss_pred CCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHc-CCceeEeccCChhhhHHHhhhcCC
Q 011766 193 DSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREF-KTGIHMHVAEIPYENQVVMDTRKV 271 (478)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-~~~v~~H~~~~~~~~~~~~~~~~~ 271 (478)
..++.++++.. .+.++....++..+.++++.+++++++|+++ |+++++|+.+...+.......++.
T Consensus 157 -----------~~~~~i~~~~~--~g~i~~~~~~~~~~~~s~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~~~~ 223 (401)
T TIGR02967 157 -----------ESKALIERWHG--KGRLLYAVTPRFAPTSSPEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKELFPE 223 (401)
T ss_pred -----------HHHHHHHHHhC--cCCceEEEECCcCCcCcHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHcCC
Confidence 44555555444 3567777888888899999999999999999 999999999888777777766665
Q ss_pred CCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCCCcHHHHHHCCCcEEEcCCCCCCCCC
Q 011766 272 DHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNR 350 (478)
Q Consensus 272 ~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~gv~v~~gsD~~~~~~~ 350 (478)
...+++.++..+.++.+.++.||.++++++++++++.|+.+++||.++++. .+..|++.++++|+++++|||+... ++
T Consensus 224 ~~~~~~~l~~~g~lg~~~~~~H~~~~~~~~~~~l~~~g~~v~~~P~~~~~~~~g~~~~~~~~~~Gv~v~lGtD~~~~-~~ 302 (401)
T TIGR02967 224 AKDYLDVYDHYGLLGRRSVFAHCIHLSDEECQRLAETGAAIAHCPTSNLFLGSGLFNLKKALEHGVRVGLGTDVGGG-TS 302 (401)
T ss_pred CCcHHHHHHHCCCCCCCeEEEecccCCHHHHHHHHHcCCeEEEChHHHHHhccCCCCHHHHHHCCCeEEEecCCCCC-CC
Confidence 555688999999999999999999999999999999999999999998876 6789999999999999999998543 45
Q ss_pred cCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCC----
Q 011766 351 MSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVP---- 426 (478)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~---- 426 (478)
.+++++++.+....... ..+++++++|+++|.+||+.+|+++++|+|++|+.|||+++|.+.....+
T Consensus 303 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~aT~~~A~~lg~~~~~G~i~~G~~ADlvi~d~~~~~~~~~~~~ 373 (401)
T TIGR02967 303 FSMLQTLREAYKVSQLQ---------GARLSPFEAFYLATLGGARALDLDDRIGNFEPGKEADFVVLDPAATPLLALRFE 373 (401)
T ss_pred cCHHHHHHHHHHHhhhc---------CCCCCHHHHHHHHHHHHHHHhCCcCCccccCCCCccCEEEEcCCCCcccccccc
Confidence 68899888766543211 23589999999999999999999878999999999999999998655433
Q ss_pred ----cCChhhhhhhccCCCCeeEEEEcc
Q 011766 427 ----VHDRITSLVYCMRTENVVSVMCNG 450 (478)
Q Consensus 427 ----~~d~~~~~~~~~~~~~v~~v~v~G 450 (478)
..||+..+++.....+|..|||+|
T Consensus 374 ~~~~~~~~~~~~v~~~~~~~v~~v~v~G 401 (401)
T TIGR02967 374 GADTLEDKLFKLMYLGDDRNVAETYVAG 401 (401)
T ss_pred cccchhhHHHHheeecCccceeEEEeCC
Confidence 468999999999999999999998
|
This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model. |
| >cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=366.75 Aligned_cols=388 Identities=21% Similarity=0.265 Sum_probs=297.1
Q ss_pred ceeecceE-EEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccC-----CCCchHHhhh
Q 011766 36 RVFRNGGV-FVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD-----DVDLMTWLHD 109 (478)
Q Consensus 36 ~~~~~~~v-~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~-----~~~~~~~~~~ 109 (478)
++.++++| +|+||+|++||+.. ..++||++|++|+|||||+|+|+.+..+++... ..++.+|+.
T Consensus 6 ~~~~~~~i~~v~~g~I~~Vg~~~---------~~~~iD~~g~lv~PGfVn~H~Hl~~~~~rg~~~~~~~~~~~l~~w~~- 75 (418)
T cd01313 6 GWERNVRIEVDADGRIAAVNPDT---------ATEAVALLGGALLPGMPNLHSHAFQRAMAGLTEYRGSAADSFWTWRE- 75 (418)
T ss_pred ceecCeEEEEeCCCeEEEecCCC---------CCcccccCCCeeccCccccCccHHHHHhcccccccCCCCCChhhHHH-
Confidence 56788999 99999999999743 125699999999999999999999999988654 356778984
Q ss_pred ccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc--------------CHHHHHHHHHHhCCeEEEecccccCCC
Q 011766 110 RIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------------HVSEMAKAVELLGLRACLVQSTMDCGE 175 (478)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~--------------~~~~~~~~~~~~g~~~~~~~~~~~~~~ 175 (478)
..++....+++++.+...+..+.+++++||||++++... ......+.....|++..+....++...
T Consensus 76 ~~~~~~~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~GiR~~~~~~~~~~~~ 155 (418)
T cd01313 76 LMYRFAARLTPEQIEAIARQLYIEMLLAGITAVGEFHYVHHDPDGTPYADPAELAQRVIAAASDAGIGITLLPVLYARAG 155 (418)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCEEEEeeeeccCCCCCccCChhhhHHHHHHHHHHhCCeEEeeeeEEeccC
Confidence 446666778999999999999999999999999985321 124567778899999987765554321
Q ss_pred CCCCcccccCCcccCCCCCCccccccchhHHHHHHHhc--CCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeE
Q 011766 176 GLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHH--HAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHM 253 (478)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~ 253 (478)
...... ......... ......+.+.+.. ....+.+...+.++....++++.++++.++|++ |+++++
T Consensus 156 ~~~~~~-~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~s~e~l~~~~~~a~~-g~~i~~ 224 (418)
T cd01313 156 FGGPAP-NPGQRRFIN---------GYEDFLGLLEKALRAVKEHAAARIGVAPHSLRAVPAEQLAALAALASE-KAPVHI 224 (418)
T ss_pred CCCCCC-chhhhhhcc---------cHHHHHHHHHHHhhhhccCCceEEEEccCCCCCCCHHHHHHHHHHHhc-CCceEE
Confidence 100000 000000000 0002222222211 112356777788888889999999999999999 999999
Q ss_pred eccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCCCcHHHHH
Q 011766 254 HVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEML 332 (478)
Q Consensus 254 H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~ 332 (478)
|+.+...+...+....+ ..+++.+...+.+++++++.||.++++++++++++.|+.+++||.+++++ .+.+|+++++
T Consensus 225 H~~e~~~e~~~~~~~~g--~~~i~~l~~~g~l~~~~~~~H~~~l~~~~~~~la~~g~~v~~~P~sn~~lg~g~~p~~~l~ 302 (418)
T cd01313 225 HLAEQPKEVDDCLAAHG--RRPVELLLDHGHLDARWCLVHATHLTDNETLLLGRSGAVVGLCPTTEANLGDGIFPAAALL 302 (418)
T ss_pred EeCCCHHHHHHHHHHcC--CCHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHcCCEEEECCCchhhccCCCCCHHHHH
Confidence 99887766555554443 34788999999999999999999999999999999999999999999877 6889999999
Q ss_pred HCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccc
Q 011766 333 HADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKA 412 (478)
Q Consensus 333 ~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~A 412 (478)
++|+++++|||+.. ..+++++|+.+....+........+...+.++.+++|+++|.++|+++|++ +|+|++||.|
T Consensus 303 ~~Gv~v~lGtD~~~---~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~T~~gA~alg~~--~Gsle~Gk~A 377 (418)
T cd01313 303 AAGGRIGIGSDSNA---RIDLLEELRQLEYSQRLRDRARNVLATAGGSSARALLDAALAGGAQALGLA--TGALEAGARA 377 (418)
T ss_pred HCCCcEEEecCCCC---CcCHHHHHHHHHHHHHHHhcccccccccCCCCHHHHHHHHHHHHHHHhCCC--CCeECCCCcc
Confidence 99999999999643 357898888776543321100000112346999999999999999999995 8999999999
Q ss_pred cEEEEcCCCCCCCCc--CChhhhhhhccCCCCeeEEEEccE
Q 011766 413 DMVVVDPFSWPMVPV--HDRITSLVYCMRTENVVSVMCNGQ 451 (478)
Q Consensus 413 Dlvv~d~~~~~~~~~--~d~~~~~~~~~~~~~v~~v~v~G~ 451 (478)
|||++|.+.++..|. .||+..+++......|..|||+|+
T Consensus 378 Dlvvld~~~~~~~p~~~~~~~~~lv~~~~~~~V~~v~V~G~ 418 (418)
T cd01313 378 DLLSLDLDHPSLAGALPDTLLDAWVFAAGDREVRDVVVGGR 418 (418)
T ss_pred CEEEEcCCCccccCCCchhHHHHHeecCCCCceeEEEeCCC
Confidence 999999997777775 479999999998899999999995
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=359.85 Aligned_cols=408 Identities=33% Similarity=0.548 Sum_probs=335.6
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcccc
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~ 98 (478)
..++|+|..+++.|+... ++.+++.|+||+|+.|++..+.+ .+.++||++|++|+|||||+|+|..++.+++..
T Consensus 2 ~~~~i~~~~~~~~d~~~~-~~~~~~~i~~g~I~~ig~~~~~~-----~~~~~iD~~~~lv~Pgfvn~H~H~~~t~~~g~~ 75 (421)
T COG0402 2 TMLLIRGDLLLTNDPEGR-IEDGDLVIEDGKIVAIGANAEGP-----PDEEVIDAKGKLVLPGFVNAHTHLDQTLLRGLA 75 (421)
T ss_pred cceeeeCcEEeecCcccc-eeeeeEEEcCCEEEEeCCcCCCC-----CCceeecCCCCEeccCccccccchHHHHHhhhh
Confidence 346889999998765533 56789999999999999875421 356899999999999999999999999999988
Q ss_pred CCCCchHHhhhccccccCC-CChHHHHHHHHHHHHHHHhcCcceeecCCccCH---HHHHHHHHHhCCeEEEecccccCC
Q 011766 99 DDVDLMTWLHDRIWPYESN-MTEEDSYISTLLCGIELIHSGVTCFAEAGGQHV---SEMAKAVELLGLRACLVQSTMDCG 174 (478)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~ 174 (478)
....+..|+..+.|+.+.. .++++.+......+.+++++|+|+++.+..... ....+.+...|++.+.+....+.+
T Consensus 76 ~~~~l~~wl~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~t~~~~~~~~~~~~~~~~~~a~~~~g~r~~~~~~~~~~~ 155 (421)
T COG0402 76 DDLPLLEWLERYVWPREARLLTEEDLYARALLALLEMLRNGTTTARTHVDVVAESADAAFEAALEVGLRAVLGPVLQDVA 155 (421)
T ss_pred cccchHHHHHHHHhHHHhhcCCHHHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHHHHHHhCCeeEeeeccccCC
Confidence 7777999999988888877 566788888899999999999999777654332 346678899999998887777654
Q ss_pred CCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEe
Q 011766 175 EGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMH 254 (478)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H 254 (478)
++...... .+. +. ..++.++++...+ .+.+...++..++++++.++.+.++++++|+++++|
T Consensus 156 --~p~~~~~~-~~~-~~------------~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~v~iH 217 (421)
T COG0402 156 --FPDPGAET-DEE-LE------------ETEELLREAHGLG--RDVVGLAPHFPYTVSPELLESLDELARKYGLPVHIH 217 (421)
T ss_pred --CCcccccc-hHH-HH------------HHHHHHHHHhcCC--CeeEEEecCCCCCCCHHHHHHHHHHHhcCCCceEEE
Confidence 22111110 000 12 4677788877765 667778999999999999999999999999999999
Q ss_pred ccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCCCcHHHHHH
Q 011766 255 VAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLH 333 (478)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~ 333 (478)
+.+...+........ +..+.+.+...+.+..+.++.||.+++++++..+++.|+.+++||.+|+++ .+..|++++++
T Consensus 218 ~~E~~~e~~~~~~~~--g~~~~~~~~~~g~l~~~~~~~H~~~~~~~e~~~l~~~g~~v~~cP~sN~~L~sG~~p~~~~~~ 295 (421)
T COG0402 218 LAETLDEVERVLEPY--GARPVERLDLLGLLGSHTLLAHCVHLSEEELELLAESGASVVHCPRSNLKLGSGIAPVRRLLE 295 (421)
T ss_pred ecCcHHHHHHHHhhc--CCCHHHHHHHcCCCCCCeEEEEeccCCHHHHHHHhhCCCeEEECcchhccccCCCCCHHHHHH
Confidence 999999888877733 345888999999999999999999999999999999999999999999998 67899999999
Q ss_pred CCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCcccc
Q 011766 334 ADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKAD 413 (478)
Q Consensus 334 ~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~AD 413 (478)
.|+++.+|||+..+++..++|++|..+.++.+....... ...+. ++|+++|.++|++||+ ++.|+|++|++||
T Consensus 296 ~gv~v~~gTD~~~~~~~~d~l~~~~~a~~l~~~~~~~~~-----~~~~~-~~l~~aT~~gA~alg~-~~~G~le~G~~AD 368 (421)
T COG0402 296 RGVNVALGTDGAASNNVLDMLREMRTADLLQKLAGGLLA-----AQLPG-EALDMATLGGAKALGL-DDIGSLEVGKKAD 368 (421)
T ss_pred cCCCEEEecCCccccChHHHHHHHHHHHHHHHhhcCCCc-----ccchH-HHHHHHHhhHHHHcCC-cccCCcccccccC
Confidence 999999999998887779999999999887764322111 11222 4999999999999998 6799999999999
Q ss_pred EEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeee
Q 011766 414 MVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKIL 460 (478)
Q Consensus 414 lvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~ 460 (478)
|||+|.+.....+.. +.+.+++......|..||++|+.++.++++.
T Consensus 369 lvvld~~~~~~~~~~-~~~~~v~~~~~~~v~~v~~~g~~v~~~~~~~ 414 (421)
T COG0402 369 LVVLDASAPHLAPLR-PVSRLVFAAGGKDVDRVLVDGRLVMEDGRLL 414 (421)
T ss_pred EEEEcCCCCcccccc-HHHHHHHhcCCCceeEEEECCEEEEEcceeh
Confidence 999999865444444 7778888888889999999999999999986
|
|
| >cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=347.31 Aligned_cols=364 Identities=20% Similarity=0.266 Sum_probs=286.7
Q ss_pred CEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCCCCchHHhhhccccccCCCChHHHHHHH
Q 011766 48 DRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYIST 127 (478)
Q Consensus 48 G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (478)
|+|++||+..+....+ .+.+++|+.|++|+|||||+|+|+.++.+++......+.+|+.... +....+++++.+...
T Consensus 1 ~~I~aVG~~~~~~~~~--~~~~v~d~~g~~v~PGlVnaH~H~~~~~~rg~~~~~~~~~wl~~~~-~~~~~~~~e~~~~~a 77 (381)
T cd01312 1 DKILEVGDYEKLEKRY--PGAKHEFFPNGVLLPGLINAHTHLEFSANVAQFTYGRFRAWLLSVI-NSRDELLKQPWEEAI 77 (381)
T ss_pred CeEEEECChHHHHhhc--CCCeEEecCCcEEecCccccccccchhccccccCCCchHHHHHHHH-HHHHhcChHHHHHHH
Confidence 6999999865543323 2468999999999999999999999999988776778889997643 445667788888888
Q ss_pred HHHHHHHHhcCcceeecCCccCHHHHHHHHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHH
Q 011766 128 LLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKE 207 (478)
Q Consensus 128 ~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (478)
..++.+++++||||+.|+... ....+.....|++...+...++... ..+ ..... ...+
T Consensus 78 ~~~~~E~l~~G~Tt~~d~~~~--~~~~~a~~~~GiR~~~~~~~~~~~~---~~~-----~~~~~------------~~~~ 135 (381)
T cd01312 78 RQGIRQMLESGTTSIGAISSD--GSLLPALASSGLRGVFFNEVIGSNP---SAI-----DFKGE------------TFLE 135 (381)
T ss_pred HHHHHHHHHhCCeEEEEecCC--HHHHHHHHHcCCcEEEEEeeECCCC---chh-----hhhHH------------HHHH
Confidence 999999999999999997643 2367788899999988776653211 000 00000 1222
Q ss_pred HHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcC----------------C
Q 011766 208 LYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRK----------------V 271 (478)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~----------------~ 271 (478)
.+.++....++.++..++++.+++++++.++++.++|+++++++++|+.+...+...+....+ .
T Consensus 136 ~~~~~~~~~~~~v~~~~~p~a~~~~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~ 215 (381)
T cd01312 136 RFKRSKSFESQLFIPAISPHAPYSVHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKK 215 (381)
T ss_pred HHHHhhccCccceEEEECCCCCcccCHHHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccchhhHhhhhcccccccC
Confidence 233322223567888899999999999999999999999999999999999887765543321 1
Q ss_pred CCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCCCcHHHHHHCCCcEEEcCCCCCCCCC
Q 011766 272 DHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNR 350 (478)
Q Consensus 272 ~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~gv~v~~gsD~~~~~~~ 350 (478)
+..+++.++..+.++++.++.||.++++++++++++.|+.+++||.+++.+ .+..|+++++++|+++++|||+...++.
T Consensus 216 g~~pv~~l~~~g~L~~~~~~~H~~~l~~~~~~~l~~~g~~v~~~P~sn~~lg~g~~p~~~~~~~Gv~v~lGtD~~~~~~~ 295 (381)
T cd01312 216 LATAIDFLDMLGGLGTRVSFVHCVYANLEEAEILASRGASIALCPRSNRLLNGGKLDVSELKKAGIPVSLGTDGLSSNIS 295 (381)
T ss_pred CCCHHHHHHHcCCCCCCcEEEECCcCCHHHHHHHHHcCCeEEECcchhhhhcCCCcCHHHHHHCCCcEEEeCCCCccCCC
Confidence 445789999999999999999999999999999999999999999999876 6789999999999999999998766667
Q ss_pred cCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCCh
Q 011766 351 MSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDR 430 (478)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~ 430 (478)
.+++++|+.+....... ...++.+++|+++|.++|+++|++ .|+|++||+||||++|.+.. ..|..++
T Consensus 296 ~d~~~~~~~~~~~~~~~---------~~~~~~~~~l~~aT~~gA~alg~~--~Gsle~Gk~ADlvv~d~~~~-~~~~~~~ 363 (381)
T cd01312 296 LSLLDELRALLDLHPEE---------DLLELASELLLMATLGGARALGLN--NGEIEAGKRADFAVFELPGP-GIKEQAP 363 (381)
T ss_pred CCHHHHHHHHHHhcccc---------cccCCHHHHHHHHHHHHHHHhCCC--CCccCCCCcccEEEEeCCCc-CCCCccH
Confidence 89999998877543211 113678999999999999999994 89999999999999998754 2355555
Q ss_pred hhhhhhccCCCCeeEEEEccE
Q 011766 431 ITSLVYCMRTENVVSVMCNGQ 451 (478)
Q Consensus 431 ~~~~~~~~~~~~v~~v~v~G~ 451 (478)
...+ . ....|..|||+|+
T Consensus 364 ~~~~-~--~~~~v~~v~v~G~ 381 (381)
T cd01312 364 LQFI-L--HAKEVRHLFISGK 381 (381)
T ss_pred HHHH-H--ccCCCCEEEecCC
Confidence 4333 2 3468999999996
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=332.10 Aligned_cols=413 Identities=26% Similarity=0.346 Sum_probs=322.7
Q ss_pred EEEecEEEee-CCCCceeecceEEEEC-CEEEEEcCChhhhhhhc-----cCCCeEEeCCCCEEeecccccccc-cchhh
Q 011766 22 ILHNAVIVTM-DKESRVFRNGGVFVVQ-DRIKAIGQSADILQQFS-----QMADQIIDLQSQILLPGFVNTHVH-TSQQL 93 (478)
Q Consensus 22 ~i~n~~I~t~-d~~~~~~~~~~v~I~~-G~I~~ig~~~~~~~~~~-----~~~~~viD~~G~~v~PGfID~H~H-~~~~~ 93 (478)
++.|-.+.+. .++..+.++..+.|+| |||+.|++.......+. .+..++++..|.+++|||||+|+| .-+.+
T Consensus 8 v~~gtf~~~~~~~~l~i~e~~sl~Vd~~GKi~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~mPGfVdtH~H~a~q~~ 87 (439)
T KOG3968|consen 8 VFVGTFVHTDALGELEILEGSSLGVDDTGKIVFIGKAYFDENKLKGEGVEKENTKIKLSSGHFLMPGFVDTHIHPAHQFA 87 (439)
T ss_pred EecccEEeeccccceEEecCcceeecCCccEEEeeccccchhhhcccccccccceeeecCCcEEecceeecccchHhhhh
Confidence 3444433332 3456677888889998 99999998654321111 123478999999999999999999 55555
Q ss_pred hccccCCCCchHHhhhccccccCCCCh-HHHHHHHHHHHHHHHhcCcceeecCCccCH---HHHHHHHHHhCCeEEEecc
Q 011766 94 AKGIADDVDLMTWLHDRIWPYESNMTE-EDSYISTLLCGIELIHSGVTCFAEAGGQHV---SEMAKAVELLGLRACLVQS 169 (478)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~---~~~~~~~~~~g~~~~~~~~ 169 (478)
..+.+.+.++.+|+.+++|+.+..+.. ++.+.......++++++|+||+..+.+... .-+++.+...|+++.++..
T Consensus 88 ~s~~g~d~pll~wl~~~~f~le~~~~~~e~~~q~~~~vv~~mL~~GTTt~~~f~~~~~~s~~ll~~~~~~~G~R~~igkv 167 (439)
T KOG3968|consen 88 MSGAGTDMPLLQWLGKYTFPLEATFTNEEDARQVYQRVVKEMLRAGTTTVEYFSTLHLDSELLLARAAIRAGQRALIGKV 167 (439)
T ss_pred hhccccCcHHHHHhhcceeecchhhhhHHHHHHHHHHHHHHHHHcCceehhhhhccCchhHHHHHHHHHHhCCceeeeee
Confidence 566667888999999999999999988 555555556889999999999988765433 3467788899999999999
Q ss_pred cccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCC
Q 011766 170 TMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKT 249 (478)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~ 249 (478)
.++++...++.. -..++..++ ...+++....+.....+...+.++....++.+.+.+.-.+++..++
T Consensus 168 ~m~~~~~~~p~~-~~~~E~si~------------~t~~~i~~~~~~~~~~~~~~vt~~fa~~c~k~v~~~l~~lak~~~l 234 (439)
T KOG3968|consen 168 CMDCNAHAVPKG-VETTEESIE------------STEDLIPKLEKLKREKVNPIVTPRFAASCSKGVFEELSKLAKYHNL 234 (439)
T ss_pred hhccCCCCCCcc-chhHHHHHH------------HHHHHHHHHHhhccCCCCCcccccccCCCcchhHHHHHHHHHhhhh
Confidence 988874322221 122233333 4555555554444444444456667777888899999999999999
Q ss_pred ceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCCCcH
Q 011766 250 GIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPI 328 (478)
Q Consensus 250 ~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~ 328 (478)
+++.|..+...+..++...++....+...++..+.+.+..+++|+.++++++++.++++|..++.||.+|..+ .+.+++
T Consensus 235 ~~q~hIsen~~EI~~~~~ff~~~~~y~~~yd~~~lL~~ktvlaH~~hl~d~ei~~l~k~g~svshCP~Sn~~L~sG~~~v 314 (439)
T KOG3968|consen 235 HIQIHISENGKEIEAVKNFFPEKLSYTDVYDKGGLLTEKTVLAHLEHLSDEEIELLAKRGCSVSHCPTSNSILGSGIPRV 314 (439)
T ss_pred hhhhhhhhcHHHHHHHHHhhhhcccchHHHHHhcccchHhHhhhheecCchhHHHHHhcCCceEECCcchhhhccCCccH
Confidence 9999999999999999999988878888888899999999999999999999999999999999999999888 899999
Q ss_pred HHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCcccccc
Q 011766 329 KEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEA 408 (478)
Q Consensus 329 ~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~ 408 (478)
+++++.|+.+.+|||..+ .++...++.+....+.- ....+..++|++|+|.+||.|+|++||+++..|+|++
T Consensus 315 r~lL~~~v~VgLGtDv~~----~s~l~a~r~A~~~s~hL----~~~~~~~~Ls~~e~L~lATi~GA~aLg~d~~~Gs~eV 386 (439)
T KOG3968|consen 315 RELLDIGVIVGLGTDVSG----CSILNALRQAMPMSMHL----ACVLDVMKLSMEEALYLATIGGAKALGRDDTHGSLEV 386 (439)
T ss_pred HHHHhcCceEeecCCccc----cccHHHHHHHHHHHHHH----HhccCcccCCHHHHHHHHhccchhhccCCCcccceec
Confidence 999999999999999865 34566666655543311 1112446799999999999999999999999999999
Q ss_pred CccccEEEEcCCCCC----CCC-cCChhhhhhhccCCCCeeEEEEccEEEEE
Q 011766 409 GKKADMVVVDPFSWP----MVP-VHDRITSLVYCMRTENVVSVMCNGQWVMK 455 (478)
Q Consensus 409 G~~ADlvv~d~~~~~----~~~-~~d~~~~~~~~~~~~~v~~v~v~G~~v~~ 455 (478)
||++|++++|.+.+. ..+ ..+.++.+++...++++..|||+|+.|++
T Consensus 387 GK~fDai~id~s~~~~~l~~~~~~~~lI~~~v~~g~drni~~V~V~Gk~v~~ 438 (439)
T KOG3968|consen 387 GKYFDAIIIDLSAPESPLYRFSGHHDLISKVVYNGDDRNIAEVFVAGKLVKQ 438 (439)
T ss_pred ccccceEEEeCCCCcchhhhccchHHHHHHHHhcCCCCceEEEEEccEEecc
Confidence 999999999998542 223 45667788999999999999999999875
|
|
| >PRK07213 chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-44 Score=341.95 Aligned_cols=367 Identities=19% Similarity=0.289 Sum_probs=280.1
Q ss_pred eEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCC
Q 011766 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (478)
Q Consensus 21 ~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~ 100 (478)
++|+|++|++++ ...+.+++|+|++|+|++|++.. .+.++||++|++| |||||+|+|+..+.+++...+
T Consensus 2 ~li~~~~v~~~~--~~~~~~~~v~i~~g~I~~i~~~~--------~~~~~id~~g~~v-PGlvd~H~H~~~~~~rg~~~~ 70 (375)
T PRK07213 2 LVYLNGNFLYGE--DFEPKKGNLVIEDGIIKGFTNEV--------HEGNVIDAKGLVI-PPLINAHTHIGDSSIKDIGIG 70 (375)
T ss_pred EEEEeeEEEeCC--CCceeeeEEEEECCEEEEeccCC--------CCCeEEeCCCCEe-cceeeeccccCchhhhcCCCC
Confidence 579999999753 23456789999999999998641 2457999999999 999999999998888887777
Q ss_pred CCchHHhhh---ccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC---HHHHHHHHHHhCCeEEEecccccCC
Q 011766 101 VDLMTWLHD---RIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH---VSEMAKAVELLGLRACLVQSTMDCG 174 (478)
Q Consensus 101 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~ 174 (478)
.++.+|+.. ..+.....+++++.+......+.+++++|+||++|+.... .....+.....+++... +..
T Consensus 71 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~~~~~~~~~~~~~a~~~~~~r~~~----~~~- 145 (375)
T PRK07213 71 KSLDELVKPPNGLKHKFLNSCSDKELVEGMKEGLYDMYNNGIKAFCDFREGGIKGINLLKKASSDLPIKPII----LGR- 145 (375)
T ss_pred CCHHHHccCCCcchHHHHhcCCHHHHHHHHHHHHHHHHHcCCeEEEEhhhcChhHHHHHHHHHHcCCCceEE----ecC-
Confidence 777777631 1112234678888888889999999999999999964222 22334444555665531 100
Q ss_pred CCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEe
Q 011766 175 EGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMH 254 (478)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H 254 (478)
+.. ... . ...+.++....... .++++..+.++++.+++++++|+++|+++++|
T Consensus 146 ---~~~----~~~---~------------~~~~~~~~~~~~~~-----g~~~~~~~~~s~~~l~~~~~~A~~~g~~v~~H 198 (375)
T PRK07213 146 ---PTE----ADE---N------------ELKKEIREILKNSD-----GIGLSGANEYSDEELKFICKECKREKKIFSIH 198 (375)
T ss_pred ---CCc----ccc---h------------hhHHHHHHHHHhcc-----cccccccccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 000 000 0 22222222221111 14555666788999999999999999999999
Q ss_pred ccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCCCcHHHHHH
Q 011766 255 VAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLH 333 (478)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~ 333 (478)
+.+...+.......++ ..+++.+...+.. ++ .+.|+.++++++++++++.|+.+++||.+|+.. .+.+|+++|++
T Consensus 199 ~~e~~~e~~~~~~~~G--~~~v~~~~~~G~~-~~-~i~H~~~~~~~~i~~la~~g~~v~~~P~sn~~l~~g~~~v~~l~~ 274 (375)
T PRK07213 199 AAEHKGSVEYSLEKYG--MTEIERLINLGFK-PD-FIVHATHPSNDDLELLKENNIPVVVCPRANASFNVGLPPLNEMLE 274 (375)
T ss_pred eCCchhHHHHHHHHcC--CChHHHHHhcCCC-CC-EEEECCCCCHHHHHHHHHcCCcEEECCcchhhhccCCccHHHHHH
Confidence 9988877666555443 3366777777765 55 479999999999999999999999999999877 68899999999
Q ss_pred CCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCcccc
Q 011766 334 ADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKAD 413 (478)
Q Consensus 334 ~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~AD 413 (478)
+|+++++|||+... ++.+++++|+.+.... +++++++++++|.++|+.+|+++ .|+|++|+.||
T Consensus 275 ~Gv~v~lGTD~~~~-~~~~~~~e~~~~~~~~--------------~~~~~~~l~~aT~~gA~~lg~~~-~G~l~~G~~AD 338 (375)
T PRK07213 275 KGILLGIGTDNFMA-NSPSIFREMEFIYKLY--------------HIEPKEILKMATINGAKILGLIN-VGLIEEGFKAD 338 (375)
T ss_pred CCCEEEEeeCCCCC-chHhHHHHHHHHHHHh--------------CcCHHHHHHHHHHHHHHHhCCCC-cCCcCCCCccc
Confidence 99999999998654 4567888888765321 48999999999999999999964 89999999999
Q ss_pred EEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEE
Q 011766 414 MVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQW 452 (478)
Q Consensus 414 lvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~ 452 (478)
||++|.+. ..|..||+..+++......|..|||+||.
T Consensus 339 lvv~d~~~--~~p~~dp~~~lV~~~~~~~v~~v~v~G~~ 375 (375)
T PRK07213 339 FTFIKPTN--IKFSKNPYASIITRCESGDIVNKILKGKL 375 (375)
T ss_pred EEEEcCcc--ccccCCchHHHhhhccCCCceEEEECCcC
Confidence 99999864 34778999999999888999999999983
|
|
| >PRK09356 imidazolonepropionase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=323.59 Aligned_cols=380 Identities=21% Similarity=0.257 Sum_probs=247.0
Q ss_pred cceeEEEecEEEeeCCCC----ceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhh
Q 011766 18 SSTMILHNAVIVTMDKES----RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQL 93 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~----~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~ 93 (478)
+++++|+|+.|+++++.. +.+++++|+|+||||++||+..+.+. ....++||++|++|+|||||+|+|+.+..
T Consensus 2 ~~~~li~~~~v~~~~~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~---~~~~~~iD~~g~~v~PG~id~H~Hl~~~~ 78 (406)
T PRK09356 2 MADLLWTNAQLATMDGGGMGELGIIEDGAIAIEDGKIVWVGPEADLPA---AYAAEVIDAGGKLVTPGLIDCHTHLVFGG 78 (406)
T ss_pred CceEEEECCEEEecCCCCccccccccCcEEEEECCEEEEEeCcccccc---ccCceEEECCCCEEeeceEecCCCcccCC
Confidence 567999999999876542 67889999999999999998643221 12358999999999999999999997653
Q ss_pred hccc-----cCCCCchHHhhhc--c---ccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC--H---HHHHHHHH
Q 011766 94 AKGI-----ADDVDLMTWLHDR--I---WPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH--V---SEMAKAVE 158 (478)
Q Consensus 94 ~~~~-----~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~--~---~~~~~~~~ 158 (478)
.++. ....++.+|+... . +.....++.++.+......+.+++++|||++++..... . ....+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~ 158 (406)
T PRK09356 79 NRANEFELRLQGVSYEEIAAQGGGILSTVRATRAASEEELFAQALPRLDALLAEGVTTVEIKSGYGLDLETELKMLRVAR 158 (406)
T ss_pred CcHHHHHHHHCCCcHHHHHHhcCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCHHHHHHHHHHHH
Confidence 3321 1222344443211 0 11233466677777778889999999999999754221 1 11122222
Q ss_pred Hh----CCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCH
Q 011766 159 LL----GLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATD 234 (478)
Q Consensus 159 ~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (478)
.. +++... .. ..++.++..... ....... ....+.++.+... +.+............++
T Consensus 159 ~~~~~~~i~~~~--~~-~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~ 221 (406)
T PRK09356 159 RLGEEHPVDVVT--TF-LGAHAVPPEYKG-RPDAYID-----------LVCEEMLPAVAEE--GLADAVDVFCETGAFSV 221 (406)
T ss_pred HHhhhCCCceEe--ee-eecccCCccccC-CHHHHHH-----------HHHHHHhHHHHhc--CCcceEEEEecCCCCCH
Confidence 22 332211 11 111112211100 0000000 0011223222221 22222222233345678
Q ss_pred HHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEE
Q 011766 235 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 314 (478)
Q Consensus 235 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~ 314 (478)
+.+++++++|+++|+++++|+.+..... ..+.....+ ...+.|+.++++++++++++.|+.+++
T Consensus 222 ~~l~~~~~~A~~~g~~v~~H~~~~~~~~------------~~~~~~~~~----~~~~~H~~~~~~~~~~~la~~g~~~~~ 285 (406)
T PRK09356 222 EQSERVLEAAKALGLPVKIHAEQLSNLG------------GAELAAEYG----ALSADHLEYLDEAGIAAMAEAGTVAVL 285 (406)
T ss_pred HHHHHHHHHHHHCCCCEEEEEecccCCC------------HHHHHHHcC----CcEehHhhcCCHHHHHHHHHhCCEEEE
Confidence 9999999999999999999997633211 112222222 234789999999999999999999999
Q ss_pred Cccchhhc--cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHH
Q 011766 315 CPASAMRM--LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATIN 392 (478)
Q Consensus 315 ~p~~~~~~--~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~ 392 (478)
||.+++.. .+..|+++++++|+++++|||+.+. .+++..+........ ...+++++++++++|.|
T Consensus 286 ~P~~~~~l~~~~~~~~~~l~~~Gi~v~lgtD~~~~---~~~~~~~~~~~~~~~----------~~~~l~~~~~l~~~T~~ 352 (406)
T PRK09356 286 LPGAFYFLRETQYPPARLLRDAGVPVALATDFNPG---SSPTESLLLAMNMAC----------TLFRLTPEEALAAVTIN 352 (406)
T ss_pred CccchhhcCcccCchHHHHHHCCCeEEEeCCCCCC---CChhHHHHHHHHHHh----------hhcCCCHHHHHHHHHHH
Confidence 99988765 4688999999999999999998542 133444433322110 12358999999999999
Q ss_pred HHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEE
Q 011766 393 GAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMK 455 (478)
Q Consensus 393 pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~ 455 (478)
||+++|+++++|+|++||.||||++|.+++. .+++.....+|..||++|++||+
T Consensus 353 ~A~~~g~~~~~G~i~~G~~AD~vvld~~~~~---------~~~~~~~~~~v~~v~v~G~~vy~ 406 (406)
T PRK09356 353 AARALGRQDTHGSLEVGKKADLVIWDAPSPA---------ELPYHFGVNPVETVVKNGEVVVD 406 (406)
T ss_pred HHHHhCCCCCceeeCCCCcCCEEEECCCchh---------hhhhhhCCCCccEEEECCEEeeC
Confidence 9999999888999999999999999998432 22222345789999999999985
|
|
| >COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=310.98 Aligned_cols=208 Identities=21% Similarity=0.171 Sum_probs=164.4
Q ss_pred ccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHh
Q 011766 228 QIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSR 307 (478)
Q Consensus 228 ~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~ 307 (478)
+....+++.+.++++.|.+.|+++.+|+.++.+....+.. ........+.-+.++.++|...+++++++|+++
T Consensus 314 G~~l~~~e~l~~~v~~a~~~gl~v~vHAiGD~Av~~~Lda-------fE~~~~~~~~~~~r~rieH~~~v~~~~i~R~~~ 386 (535)
T COG1574 314 GELLLTEEELEELVRAADERGLPVAVHAIGDGAVDAALDA-------FEKARKKNGLKGLRHRIEHAELVSPDQIERFAK 386 (535)
T ss_pred CCcccCHHHHHHHHHHHHHCCCcEEEEEechHHHHHHHHH-------HHHHhhhcCCccCCceeeeeeecCHhHHHHHHh
Confidence 4455789999999999999999999999998765443211 111222222345678899999999999999999
Q ss_pred cCCeEEECccchh-------------hccCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCC
Q 011766 308 AGVKVSHCPASAM-------------RMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGT 374 (478)
Q Consensus 308 ~~~~~~~~p~~~~-------------~~~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (478)
.|+.++++|.... +....+|++.|++.|+++++|||++. .+.++|..++.++...........
T Consensus 387 Lgv~~svQP~f~~~~~~~~~~rlG~~r~~~~~p~~~ll~~G~~la~gSD~Pv--~~~dP~~~i~~AVtr~~~~g~~~~-- 462 (535)
T COG1574 387 LGVIASVQPNFLFSDGEWYVDRLGEERASRSYPFRSLLKAGVPLAGGSDAPV--EPYDPWLGIYAAVTRKTPGGRVLG-- 462 (535)
T ss_pred cCceEeeccccccccchHHHHhhhhhhhhccCcHHHHHHCCCeEeccCCCCC--CCCChHHHHHHHHcCCCCCCCCCc--
Confidence 9999999987543 12346799999999999999999977 457899999988865543222111
Q ss_pred CCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEE
Q 011766 375 TDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVM 454 (478)
Q Consensus 375 ~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~ 454 (478)
.+..+|++|||+++|.++|.+.+.++++|+|++||.|||+|+|.|++.+.|.. +...++..||++|++||
T Consensus 463 -~~~~L~~~eAL~~yT~~~A~a~~~e~~~G~Le~G~~AD~~Vld~d~f~~~~~~---------i~~~~v~~T~~~Gk~VY 532 (535)
T COG1574 463 -PEERLTREEALRAYTEGGAYASGAEGEKGSLEPGKLADFAVLDRDPFTVDPDS---------IKDTKVVLTIVAGKVVY 532 (535)
T ss_pred -cccccCHHHHHHHHhhhhHHhhhccccccccccCceeeEEEecCCcccCChHH---------hccceEEEEEEcCeEee
Confidence 12269999999999999999999999999999999999999999977665421 24579999999999999
Q ss_pred EC
Q 011766 455 KN 456 (478)
Q Consensus 455 ~~ 456 (478)
+.
T Consensus 533 ~~ 534 (535)
T COG1574 533 RA 534 (535)
T ss_pred cC
Confidence 75
|
|
| >cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=313.72 Aligned_cols=368 Identities=18% Similarity=0.182 Sum_probs=248.0
Q ss_pred EEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCCC
Q 011766 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDV 101 (478)
Q Consensus 22 ~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~~ 101 (478)
.|+|++|+++ . ..+++|+|+||+|++|++..+. ..++++||++|++|+|||||+|+|+.+..+++.....
T Consensus 1 ~~~~~~~~~~--~---~~~~~v~I~~g~I~~Vg~~~~~-----~~~~~vID~~g~~v~PGlId~H~H~~~~~~~~~~~~~ 70 (398)
T cd01293 1 LLRNARLADG--G---TALVDIAIEDGRIAAIGPALAV-----PPDAEEVDAKGRLVLPAFVDPHIHLDKTFTGGRWPNN 70 (398)
T ss_pred CeeeeEEeCC--C---ceEEEEEEECCEEEEEecCCCC-----CCCCceEeCCCCEEccCEeeeeeccCcccccCCCCCC
Confidence 3789999953 1 3667999999999999986432 1356899999999999999999999877666654433
Q ss_pred CchHHhhhc--cccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC-------HHHHHHHHHHhCCeEEEeccccc
Q 011766 102 DLMTWLHDR--IWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-------VSEMAKAVELLGLRACLVQSTMD 172 (478)
Q Consensus 102 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~ 172 (478)
....|+... .......+++++.+......+.+++++|||+++++.... .....+.....+.+.......+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (398)
T cd01293 71 SGGTLLEAIIAWEERKLLLTAEDVKERAERALELAIAHGTTAIRTHVDVDPAAGLKALEALLELREEWADLIDLQIVAFP 150 (398)
T ss_pred CccccHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHcChhheeeeecccccccchHHHHHHHHHHHhhccceEEEEecc
Confidence 333333111 111234567788888888899999999999998754321 12223333333322222111110
Q ss_pred CCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCcee
Q 011766 173 CGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIH 252 (478)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~ 252 (478)
+.... . .. ...+.++++...+...+. .........++++.+.++++.|+++|++++
T Consensus 151 -----~~~~~----~--~~------------~~~~~v~~~~~~g~~~~~-~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~ 206 (398)
T cd01293 151 -----QHGLL----S--TP------------GGEELMREALKMGADVVG-GIPPAEIDEDGEESLDTLFELAQEHGLDID 206 (398)
T ss_pred -----Ccccc----C--CC------------CHHHHHHHHHHhCCCEEe-CCCCCcCCccHHHHHHHHHHHHHHhCCCCE
Confidence 00000 0 01 445555555443322221 122222345678999999999999999999
Q ss_pred EeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCCh-------hHHHHHHhcCCeEEECccchhhc---
Q 011766 253 MHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH-------TEIGLLSRAGVKVSHCPASAMRM--- 322 (478)
Q Consensus 253 ~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~-------~~~~~~~~~~~~~~~~p~~~~~~--- 322 (478)
+|+.+.......... ..+..+...+.+ .+..+.|+.++++ +.++++++.++.++.||.++...
T Consensus 207 ~H~~e~~~~~~~~~~------~~~~~~~~~g~~-~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~~~p~s~~~l~~~ 279 (398)
T cd01293 207 LHLDETDDPGSRTLE------ELAEEAERRGMQ-GRVTCSHATALGSLPEAEVSRLADLLAEAGISVVSLPPINLYLQGR 279 (398)
T ss_pred EEeCCCCCcchhHHH------HHHHHHHHhCCC-CCEEeeecchhhcCCHHHHHHHHHHHHHcCCeEEeCCCcchhhccc
Confidence 999876543211111 134445566655 6788999998862 45999999999999999988654
Q ss_pred -------cCCCcHHHHHHCCCcEEEcCCCCC----CCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhH
Q 011766 323 -------LGFAPIKEMLHADICVSLGTDGAP----SNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATI 391 (478)
Q Consensus 323 -------~~~~~~~~~~~~gv~v~~gsD~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~ 391 (478)
.+..++++++++|+++++|||+.. ..+..++++.++.+..... .. ...+.+++|+++|.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~Gv~v~lGTD~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~~~~~~al~~aT~ 349 (398)
T cd01293 280 EDTTPKRRGVTPVKELRAAGVNVALGSDNVRDPWYPFGSGDMLEVANLAAHIAQ--------LG--TPEDLALALDLITG 349 (398)
T ss_pred ccCCCCCCCCCcHHHHHHCCCeEEECCCCCCCCCcCCCCCCHHHHHHHHHHHHc--------CC--ChhhHHHHHHhcCh
Confidence 467899999999999999999842 2234578888876554321 00 11356899999999
Q ss_pred HHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEE
Q 011766 392 NGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWV 453 (478)
Q Consensus 392 ~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v 453 (478)
++|+++|+ +.|+|++||.||||++|.+++ .|... . ..++..||++|+++
T Consensus 350 ~~A~~lg~--~~G~l~~Gk~ADlv~~d~~~~-----~~~~~----~--~~~~~~v~~~G~~~ 398 (398)
T cd01293 350 NAARALGL--EDYGIKVGCPADLVLLDAEDV-----AEAVA----R--QPPRRVVIRKGRVV 398 (398)
T ss_pred hhhhhcCC--cCcccccCCcceEEEECCCCH-----HHHHh----c--CCCccEEEECCEEC
Confidence 99999999 479999999999999999833 22111 1 25899999999864
|
Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric. |
| >PRK09230 cytosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-38 Score=304.13 Aligned_cols=372 Identities=16% Similarity=0.211 Sum_probs=256.2
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccc
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~ 97 (478)
...++|+|++|++ +. . . .+|+|+||+|++|++..+.. ..+.++||++|++|+|||||+|+|+.....++.
T Consensus 3 ~~~~li~~~~~~~--~~-~-~--~~i~i~~g~I~~i~~~~~~~----~~~~~~id~~g~~v~PGlid~H~H~~~~~~~~~ 72 (426)
T PRK09230 3 NALMTIKNARLPG--KE-G-L--WQITIEDGKISAIEPQSEAS----LEAGEVLDAEGGLAIPPFIEPHIHLDTTQTAGE 72 (426)
T ss_pred CceEEEECcEEcC--CC-e-e--EEEEEECCEEEEecCCCCCC----CCCCceEeCCCCEeccceeEEEEccccceecCC
Confidence 3468999999984 32 2 2 49999999999999853211 124579999999999999999999988766664
Q ss_pred c---CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC------HHHHHHHHHHhCCeEEEec
Q 011766 98 A---DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH------VSEMAKAVELLGLRACLVQ 168 (478)
Q Consensus 98 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~------~~~~~~~~~~~g~~~~~~~ 168 (478)
. .+.++.+|+... +.....++.++.+......+.+++++|+|+++++.... ...+.+..+..+...-+..
T Consensus 73 ~~~~~~~~l~~~i~~~-~~~~~~~t~ed~~~~a~~~~~e~l~~GvTtvr~~~d~~~~~~~~~~a~~~~~~~~~~~~~~~i 151 (426)
T PRK09230 73 PNWNQSGTLFEGIERW-AERKALLTHEDVKQRAWQTLKWQIANGIQHVRTHVDVSDPTLTALKAMLEVKEEVAPWVDLQI 151 (426)
T ss_pred CccCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHcCcccEEeccccCCcchhHHHHHHHHHHHhhCcceEEE
Confidence 4 455678888653 45556678888889999999999999999998754321 1122233222221111111
Q ss_pred ccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccC--CHHHHHHHHHHHHH
Q 011766 169 STMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNA--TDRLLLETRDMARE 246 (478)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~a~~ 246 (478)
..+.. .+. +.. + ...+.++.....+...+ ...++..++. +++.+..++++|++
T Consensus 152 ~a~~~-~~~---~~~---~----------------~~~~~l~~a~~~~~~~v--g~~p~~~~~~~~~~e~l~~~~~~A~~ 206 (426)
T PRK09230 152 VAFPQ-EGI---LSY---P----------------NGEALLEEALRLGADVV--GAIPHFEFTREYGVESLHKAFALAQK 206 (426)
T ss_pred EeccC-ccc---cCC---c----------------cHHHHHHHHHHcCCCEE--eCCCCccccchhHHHHHHHHHHHHHH
Confidence 11100 000 000 0 11122222222222212 2334444333 57899999999999
Q ss_pred cCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccC-------ChhHHHHHHhcCCeEEECccch
Q 011766 247 FKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV-------NHTEIGLLSRAGVKVSHCPASA 319 (478)
Q Consensus 247 ~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~-------~~~~~~~~~~~~~~~~~~p~~~ 319 (478)
+|+++++|+.+...+...... .+++.+...+ ++.+.+..||.++ ++++++++++.|+.+++||.+|
T Consensus 207 ~g~~~~~H~~E~~~~~~~~~~------~~~~~~~~~g-l~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv~vv~cP~sn 279 (426)
T PRK09230 207 YDRLIDVHCDEIDDEQSRFVE------TVAALAHREG-MGARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVANPLVN 279 (426)
T ss_pred hCCCcEEEECCCCCcchHHHH------HHHHHHHHhC-CCCCEEEEecCchhcCCHHHHHHHHHHHHHcCCeEEECcchh
Confidence 999999999886554321111 2466777777 7889999999999 5789999999999999999999
Q ss_pred hhc----------cCCCcHHHHHHCCCcEEEcCCCCCC----CCCcCHHHHHHHHHHHhcccccccCCCCCCCCC-CHHH
Q 011766 320 MRM----------LGFAPIKEMLHADICVSLGTDGAPS----NNRMSIVDEMYLASLINKGREVFANGTTDPAAL-PAET 384 (478)
Q Consensus 320 ~~~----------~~~~~~~~~~~~gv~v~~gsD~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-s~~~ 384 (478)
+++ .+..|+++|+++|+++++|||+... ....++++.++......... .. +.++
T Consensus 280 ~~l~~~~~~~p~~~g~~pi~~l~~aGv~V~lGTD~~~d~~~~~~~~d~~~~~~~~~~~~~~~-----------~~~~~~~ 348 (426)
T PRK09230 280 IHLQGRFDTYPKRRGITRVKEMLEAGINVCFGHDDVFDPWYPLGTANMLQVLHMGLHVCQLM-----------GYGQIND 348 (426)
T ss_pred hhhcCCCCCCCCCCCCcCHHHHHHCCCeEEEecCCCCCCCcCCCCCCHHHHHHHHHHHHhhC-----------ChhhHHH
Confidence 865 4567899999999999999997532 12457777776554332110 01 3679
Q ss_pred HHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEEC
Q 011766 385 VLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKN 456 (478)
Q Consensus 385 al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~ 456 (478)
+|+++|.+||+++|+++ .| |++|+.||||++|.+ ++.+.+ + ....++.|+++|++|+..
T Consensus 349 ~l~maT~~gA~alg~~~-~g-le~G~~ADlv~~~~~--------~~~~~~-~--~~~~~~~v~~~G~~v~~~ 407 (426)
T PRK09230 349 GLNLITTHSARTLNLQD-YG-IEVGNPANLIILPAE--------NGFDAV-R--RQVPVRYSIRHGKVIAET 407 (426)
T ss_pred HHHHHhcchhHHhCCCC-cC-CCCCCcCCEEEEeCC--------CHHHHH-h--ccCCceEEEECCEEEecc
Confidence 99999999999999976 78 999999999999974 222211 1 246789999999999876
|
|
| >PLN02942 dihydropyrimidinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=312.76 Aligned_cols=388 Identities=19% Similarity=0.257 Sum_probs=244.6
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~ 96 (478)
++.+++|+|++|+++++ ...++|+|+||+|++|++..+. ..++++||++|++|+|||||+|+|+....+
T Consensus 3 ~~~~lli~~~~v~~~~~----~~~~~i~I~~g~I~~i~~~~~~-----~~~~~~iD~~g~~v~PG~ID~H~H~~~~~~-- 71 (486)
T PLN02942 3 SSTKILIKGGTVVNAHH----QELADVYVEDGIIVAVAPNLKV-----PDDVRVIDATGKFVMPGGIDPHTHLAMPFM-- 71 (486)
T ss_pred CCCcEEEECcEEEcCCC----CeEeEEEEECCEEEEEcCCCCC-----CCCCeEEECCCCEEecCEeeeeeccCcccC--
Confidence 45678999999997542 2456999999999999875321 124689999999999999999999954211
Q ss_pred ccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc---CHHHHHHHHHHhCCeEEEecccccC
Q 011766 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ---HVSEMAKAVELLGLRACLVQSTMDC 173 (478)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~ 173 (478)
.....+ ......+.++++||||+.|+... ...+..+.......+.. ++.
T Consensus 72 -------------------~~~~~e----d~~s~s~aAl~gGvTTv~D~~~~~~~~~~~~~~~~~~~~~~~~-----~d~ 123 (486)
T PLN02942 72 -------------------GTETID----DFFSGQAAALAGGTTMHIDFVIPVNGNLLAGYEAYEKKAEKSC-----MDY 123 (486)
T ss_pred -------------------CCcccc----hHHHHHHHHHcCCCeEEEeCCCCCCCCHHHHHHHHHHHHhhcC-----CCE
Confidence 001112 22234566899999999997422 11222222211111111 111
Q ss_pred CCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeE
Q 011766 174 GEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHM 253 (478)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~ 253 (478)
+.... ... ....... +..++.++. +...++.+..++..+..+++.+.+.++.+++.+.++++
T Consensus 124 ~~~~~--~~~-~~~~~~~------------e~~~l~~~~---gv~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~ 185 (486)
T PLN02942 124 GFHMA--ITK-WDDTVSR------------DMETLVKEK---GINSFKFFMAYKGSLMVTDELLLEGFKRCKSLGALAMV 185 (486)
T ss_pred EEEEE--ecC-CcHhHHH------------HHHHHHHhC---CCceEEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEE
Confidence 00000 000 0000000 222322222 22346666666666667889999999999999999999
Q ss_pred eccCChhhhHHHhhh---cCCC-------Cch-------H-HHHhhhCCCCCCeeeeeeccCCh-hHHHHHHhcCCeEEE
Q 011766 254 HVAEIPYENQVVMDT---RKVD-------HGT-------V-TFLDKIEFLQNNLLSAHTVWVNH-TEIGLLSRAGVKVSH 314 (478)
Q Consensus 254 H~~~~~~~~~~~~~~---~~~~-------~~~-------~-~~l~~~~~~~~~~~i~h~~~~~~-~~~~~~~~~~~~~~~ 314 (478)
| .++.......... .+.. .++ + ..+...+.++.+..+.|++.... ++++++++.|+.+..
T Consensus 186 H-aE~~~~~~~~~~~~~~~G~~~~~~~~~~rP~~~E~~av~~~~~la~~~g~~~~i~H~s~~~~~e~i~~~k~~G~~Vt~ 264 (486)
T PLN02942 186 H-AENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLYVVHVMSIDAMEEIARARKSGQRVIG 264 (486)
T ss_pred E-cCCHHHHHHHHHHHHHcCCCChhhhhccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence 9 4544432221111 1110 011 2 22334466778899999999888 899999999877665
Q ss_pred Cccc--hhh-----------c----cCCCcH---------HHHHHCCCcEEEcCCCCCCCCCcCHHH-------------
Q 011766 315 CPAS--AMR-----------M----LGFAPI---------KEMLHADICVSLGTDGAPSNNRMSIVD------------- 355 (478)
Q Consensus 315 ~p~~--~~~-----------~----~~~~~~---------~~~~~~gv~v~~gsD~~~~~~~~~~~~------------- 355 (478)
++.. ... . .-.+|+ ..+++.|+++++|||+.++....+++.
T Consensus 265 e~~ph~L~l~~~~~~~~~~~~~~~~k~~PPlr~~~~~~~L~~~l~~G~i~~igTDh~p~~~~~k~~~~~~~~~~~~G~~g 344 (486)
T PLN02942 265 EPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHGKALQAALSSGILQLVGTDHCPFNSTQKAFGKDDFRKIPNGVNG 344 (486)
T ss_pred EECchhheeCHHHhcCcccccCcceEECCCCCCHHHHHHHHHHhcCCceEEEECCCCCCChHHhhcccCCHhhCCCCccc
Confidence 5442 110 1 012465 488999999999999988754333220
Q ss_pred -HHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCc---CChh
Q 011766 356 -EMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPV---HDRI 431 (478)
Q Consensus 356 -~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~---~d~~ 431 (478)
++....+.... .....+|++++++++|.|||+++|+++++|+|++|++|||+++|.++.+..+. .++.
T Consensus 345 ~e~~l~~~~~~~--------~~~~~i~~~~~l~~~t~~pA~~lgl~~~~G~l~~G~~ADlv~vd~~~~~~v~~~~~~s~~ 416 (486)
T PLN02942 345 IEERMHLVWDTM--------VESGQISPTDYVRVTSTECAKIFNIYPRKGAILAGSDADIIILNPNSTFTISAKTHHSRI 416 (486)
T ss_pred HHHHHHHHHHHH--------HHcCCCCHHHHHHHHHHHHHHHhCCCCCCCCcCCCCcCCEEEEcCCccEEEcHHHccccC
Confidence 22222111110 01224899999999999999999998778999999999999999987655543 3344
Q ss_pred hhhhhccC--CCCeeEEEEccEEEEECCeeeccc-HHHHHHH
Q 011766 432 TSLVYCMR--TENVVSVMCNGQWVMKNKKILLLM-RGRLFQL 470 (478)
Q Consensus 432 ~~~~~~~~--~~~v~~v~v~G~~v~~~g~~~~~~-~~~~~~~ 470 (478)
...+|... ..+|..||++|++||++|+++..+ .|++++.
T Consensus 417 ~~~py~g~~l~g~v~~tiv~G~~v~~~g~~~~~~~~G~~~~~ 458 (486)
T PLN02942 417 DTNVYEGRRGKGKVEVTISQGRVVWENGELKVVRGSGRYIEM 458 (486)
T ss_pred CCCCccCcEeeeeEEEEEECCEEEEECCEEeccCCCceEecC
Confidence 44555555 578999999999999999987655 4777653
|
|
| >TIGR01224 hutI imidazolonepropionase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=303.51 Aligned_cols=354 Identities=21% Similarity=0.266 Sum_probs=233.2
Q ss_pred ecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccc-----cCCCCchHHhhhc--c
Q 011766 39 RNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI-----ADDVDLMTWLHDR--I 111 (478)
Q Consensus 39 ~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~-----~~~~~~~~~~~~~--~ 111 (478)
++++|+|+||+|++||+....+. ..+.++||++|++|+|||||+|+|+.....++. ..+.++.+|+... .
T Consensus 2 ~~~~v~i~~g~I~~vg~~~~~~~---~~~~~~iD~~g~~v~PGlin~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (377)
T TIGR01224 2 EDAVILIHGGKIVWIGQLAALPG---EEATEIIDCGGGLVTPGLVDPHTHLVFAGDRVNEFEMKLQGASYLEILAQGGGI 78 (377)
T ss_pred CceEEEEECCEEEEEechhhCCc---ccCCeEEeCCCCEEcccEEecccCccccCCcHHHHHHHhCCCCHHHHHHhcCCh
Confidence 56899999999999997432211 125589999999999999999999987555442 2456788888541 2
Q ss_pred ---ccccCCCChHHHHHHHHHHHHHHHhcCcceeecCC--ccCH---HHHHHHHH----HhCCeEEEecccccCCCCCCC
Q 011766 112 ---WPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG--GQHV---SEMAKAVE----LLGLRACLVQSTMDCGEGLPA 179 (478)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~--~~~~---~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~ 179 (478)
++....++.++.+......+.+++++|||++.... +... ....+..+ ..+++.... .. ....++.
T Consensus 79 ~~~~~~~~~~~~ed~~~~a~~~~~e~l~~Gvt~ve~~~~~g~~~~~~~~~~~a~~~~~~~~~i~~~~~--~~-~~~~~~~ 155 (377)
T TIGR01224 79 LSTVRATRAASEEELLKLALFRLKSMLRSGTTTAEVKSGYGLDLETELKMLRAAKALHEEQPVDVVTT--FL-GAHAVPP 155 (377)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCceEEEecccCCCCHHHHHHHHHHHHHHHhhCCCceEee--ee-ecccCCc
Confidence 24456688888888999999999999999984321 1111 11222222 234444321 11 1111111
Q ss_pred cccccCCcccCCCCCCccccccchhHHHHHHHhcCCC-CCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCC
Q 011766 180 SWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAA-DGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEI 258 (478)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~ 258 (478)
.+.. ...+... ......++++...+ ...++. .+.+. ..+.+.+.++++.|++.|+++++|+.+.
T Consensus 156 ~~~~-~~~~~~~-----------~~~~~~~~~~~~~~~v~~~~~-~~~~~--~~~~~~~~~~~~~A~~~g~~v~~H~~e~ 220 (377)
T TIGR01224 156 EFQG-RPDDYVD-----------GICEELIPQVAEEGLASFADV-FCEAG--VFSVEQSRRILQAAQEAGLPVKLHAEEL 220 (377)
T ss_pred cccC-CHHHHHH-----------HHHHHHHHHHHHhCCCCeeEE-EecCC--CcCHHHHHHHHHHHHHCCCCEEEEecCC
Confidence 0000 0000000 01122333332211 112221 33333 3456789999999999999999999864
Q ss_pred hhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCCCcHHHHHHCCCc
Q 011766 259 PYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADIC 337 (478)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~gv~ 337 (478)
.... .++.+...+ ...+.|+.++++++++++++.++.+++||.+++.. .+..|+++++++|++
T Consensus 221 ~~~~------------~~~~~~~~g----~~~~~H~~~~~~~~l~~la~~g~~~~~~P~~~~~l~~~~~p~~~l~~~Gv~ 284 (377)
T TIGR01224 221 SNLG------------GAELAAKLG----AVSADHLEHASDAGIKALAEAGTVAVLLPGTTFYLRETYPPARQLIDYGVP 284 (377)
T ss_pred CCCC------------HHHHHHHcC----CCccHHHhcCCHHHHHHHHhcCCEEEECchHHHhcCCcCccHHHHHHCCCC
Confidence 3211 222222222 23467999999999999999999999999998776 568899999999999
Q ss_pred EEEcCCCCC-CCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEE
Q 011766 338 VSLGTDGAP-SNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVV 416 (478)
Q Consensus 338 v~~gsD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv 416 (478)
+++|||+.+ ..+..+++..+..... ..++|.+++++++|.|||+++|+++++|+|++|+.|||||
T Consensus 285 v~lgTD~~~~~~~~~~~~~~~~~~~~--------------~~~ls~~eal~~~T~~~A~~lg~~~~~G~l~~G~~ADlvv 350 (377)
T TIGR01224 285 VALATDLNPGSSPTLSMQLIMSLACR--------------LMKMTPEEALHAATVNAAYALGLGEERGTLEAGRDADLVI 350 (377)
T ss_pred EEEECCCCCCCChhHHHHHHHHHHHH--------------hcCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCcCCEEE
Confidence 999999754 2211223333322211 1359999999999999999999988799999999999999
Q ss_pred EcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEE
Q 011766 417 VDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQW 452 (478)
Q Consensus 417 ~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~ 452 (478)
+|.+++. .+.+.....+|..||++|++
T Consensus 351 ~d~~~~~---------~~~~~~~~~~v~~v~v~G~~ 377 (377)
T TIGR01224 351 LSAPSYA---------EIPYHYGVNHVHAVIKNGNI 377 (377)
T ss_pred EcCCChH---------HhhhhcCCCCceEEEECCCC
Confidence 9998442 22233345689999999974
|
This enzyme catalyzes the third step in histidine degradation. |
| >cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=311.46 Aligned_cols=376 Identities=19% Similarity=0.220 Sum_probs=235.7
Q ss_pred eEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCC
Q 011766 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (478)
Q Consensus 21 ~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~ 100 (478)
++|+|++|+++++ ..+++|+|+||+|++|++.... ..+.++||++|++|+|||||+|+|+.....
T Consensus 1 lli~~~~v~~~~~----~~~~~i~I~~g~I~~ig~~~~~-----~~~~~viD~~g~~vlPGlID~H~H~~~~~~------ 65 (447)
T cd01314 1 LIIKNGTIVTADG----SFKADILIEDGKIVAIGPNLEA-----PGGVEVIDATGKYVLPGGIDPHTHLELPFM------ 65 (447)
T ss_pred CEEECCEEECCCC----ceeeeEEEECCEEEEeeCCCCC-----CCCceEEECCCCEEecCEEecccccccccc------
Confidence 4799999997532 3468999999999999875321 123589999999999999999999943110
Q ss_pred CCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCH-HHHHHHHHHhCCeEEEecccccCCCCCCC
Q 011766 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHV-SEMAKAVELLGLRACLVQSTMDCGEGLPA 179 (478)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 179 (478)
.....++. ....+.++.+||||+++++.... ....+.++...... ......+.+. ..
T Consensus 66 ---------------~~~~~e~~----~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~--~~ 123 (447)
T cd01314 66 ---------------GTVTADDF----ESGTRAAAAGGTTTIIDFAIPNKGQSLLEAVEKWRGKA-DGKSVIDYGF--HM 123 (447)
T ss_pred ---------------CccCcchH----HHHHHHHHhCCCcEEEeCCCCCCCCCHHHHHHHHHHHh-cCCCcccEEE--EE
Confidence 01112222 22334567899999999763222 11122221111100 0001111100 00
Q ss_pred cccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCCh
Q 011766 180 SWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP 259 (478)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~ 259 (478)
.. ..... ...+.++++...+...++.+..++..+.++++.+.++++.+++.+.++++|+ +..
T Consensus 124 ~~-~~~~~----------------~~~~~~~~l~~~g~~~ik~~~~~~~~~~~s~~~l~~~~~~a~~~g~~v~~H~-E~~ 185 (447)
T cd01314 124 II-TDWTD----------------SVIEELPELVKKGISSFKVFMAYKGLLMVDDEELLDVLKRAKELGALVMVHA-ENG 185 (447)
T ss_pred ee-cCCCh----------------HHHHHHHHHHHcCCCEEEEEeccCCCCCCCHHHHHHHHHHHHhcCCeEEEEc-CCH
Confidence 00 00000 1122222322234456777777777788899999999999999999999996 555
Q ss_pred hhhHHHhhhc---CCC-------CchH--------HHHhhhCCCCCCeeeeeeccCCh-hHHHHHHhcCCeE--EECccc
Q 011766 260 YENQVVMDTR---KVD-------HGTV--------TFLDKIEFLQNNLLSAHTVWVNH-TEIGLLSRAGVKV--SHCPAS 318 (478)
Q Consensus 260 ~~~~~~~~~~---~~~-------~~~~--------~~l~~~~~~~~~~~i~h~~~~~~-~~~~~~~~~~~~~--~~~p~~ 318 (478)
.......... +.. .++. ..+...+.++.+.++.|++.... +.++.+++.|+.+ .+||.+
T Consensus 186 ~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~~~~~~~~H~s~~~~~~~i~~~k~~g~~v~~~~~ph~ 265 (447)
T cd01314 186 DVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAIRLAELAGAPLYIVHVSSKEAADEIARARKKGLPVYGETCPQY 265 (447)
T ss_pred HHHHHHHHHHHHcCCCChHHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCeEEEecCchh
Confidence 4433222211 110 0011 12333456677888888885432 3577778787654 689987
Q ss_pred hhhc---------cC-----CCcH---------HHHHHCCCcEEEcCCCCCCCCCcCHHH--------------HHHHHH
Q 011766 319 AMRM---------LG-----FAPI---------KEMLHADICVSLGTDGAPSNNRMSIVD--------------EMYLAS 361 (478)
Q Consensus 319 ~~~~---------~~-----~~~~---------~~~~~~gv~v~~gsD~~~~~~~~~~~~--------------~~~~~~ 361 (478)
.... .+ .+|+ .+++++|+.+++|||+.++....+++. +++...
T Consensus 266 l~~~~~~~~~~~~~g~~~~~~pplr~~~~~~~l~~~l~~G~i~~igsDh~~~~~~~k~~~~~~~~~~~~G~~g~e~~l~~ 345 (447)
T cd01314 266 LLLDDSDYWKDWFEGAKYVCSPPLRPKEDQEALWDGLSSGTLQTVGSDHCPFNFAQKARGKDDFTKIPNGVPGVETRMPL 345 (447)
T ss_pred heeCHHHhccccccccceEECCCCCChHHHHHHHHHHhCCCeeEEECCCCCCCHHHhhcccCCHhhCCCCCchHhhhHHH
Confidence 3211 01 1443 489999999999999988754433332 455544
Q ss_pred HHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCc--------CChhhh
Q 011766 362 LINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPV--------HDRITS 433 (478)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~--------~d~~~~ 433 (478)
+.+... ....++++++++++|.|||+++|+.+++|+|++|++|||||+|.+..+..+. .+|+..
T Consensus 346 l~~~~~--------~~~~~~~~~~~~~~t~~pA~~~gl~~~~G~l~~G~~AD~vi~d~~~~~~~~~~~~~~~~~~~~~~g 417 (447)
T cd01314 346 LWSEGV--------AKGRITLEKFVELTSTNPAKIFGLYPRKGTIAVGSDADLVIWDPNAEKTISADTHHHNVDYNIFEG 417 (447)
T ss_pred HHHHHH--------HcCCCCHHHHHHHHhhHHHHHhCCCCCCCccCCCCcCCEEEEeCCcCEEecHHHhhccCCCCcccC
Confidence 443221 1235999999999999999999998888999999999999999985443332 233333
Q ss_pred hhhccCCCCeeEEEEccEEEEECCeeecc
Q 011766 434 LVYCMRTENVVSVMCNGQWVMKNKKILLL 462 (478)
Q Consensus 434 ~~~~~~~~~v~~v~v~G~~v~~~g~~~~~ 462 (478)
..+ ..+|.+||++|++||++|+++.-
T Consensus 418 ~~~---~g~v~~t~v~G~~v~~~~~~~~~ 443 (447)
T cd01314 418 MKV---KGWPVVTISRGKVVVEDGELVGE 443 (447)
T ss_pred eEE---eeeEEEEEECCEEEEECCEEecc
Confidence 222 25899999999999999998753
|
The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues. |
| >PRK07572 cytosine deaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=294.18 Aligned_cols=372 Identities=16% Similarity=0.164 Sum_probs=245.4
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccc-
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI- 97 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~- 97 (478)
++++|+|++|+++ . . ..+|+|++|+|++|++..+ ....++||++|++|+|||||+|+|+.....++.
T Consensus 2 ~~~~i~~~~i~~~--~-~---~~~i~i~~g~I~~v~~~~~------~~~~~~id~~g~~~~PG~id~h~h~~~~~~~~~~ 69 (426)
T PRK07572 2 FDLIVRNANLPDG--R-T---GIDIGIAGGRIAAVEPGLQ------AEAAEEIDAAGRLVSPPFVDPHFHMDATLSYGLP 69 (426)
T ss_pred CcEEEECeEECCC--C-e---eEEEEEECCEEEEecCCCC------CCcCceEeCCCCEEcccceehhhCcchhhccCCC
Confidence 5678999999953 2 1 3489999999999987532 124579999999999999999999987655443
Q ss_pred --cCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCC---ccCH---HHHHHHHHHhCCeEEEecc
Q 011766 98 --ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG---GQHV---SEMAKAVELLGLRACLVQS 169 (478)
Q Consensus 98 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~---~~~~---~~~~~~~~~~g~~~~~~~~ 169 (478)
..+..+.+|+.- .......++.++.+......+.+++++|+|+++++. .... ....+.....+........
T Consensus 70 ~~~~~g~l~e~l~~-~~~~~~~~t~edl~~~a~~~~~e~l~~G~Ttvrd~~d~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 148 (426)
T PRK07572 70 RVNASGTLLEGIAL-WGELKPLLTQEALVERALRYCDWAVARGLLAIRSHVDVCDPRLLAVEALLEVRERVAPYLDLQLV 148 (426)
T ss_pred CCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEeeccccCCCcccHHHHHHHHHHHhhccceEEEE
Confidence 245567777632 112223467788888888899999999999999952 1111 1111211222222111111
Q ss_pred cccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCC--HHHHHHHHHHHHHc
Q 011766 170 TMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNAT--DRLLLETRDMAREF 247 (478)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~a~~~ 247 (478)
.+.. .+ .+. .. ...+.+++....+...+. ..++.....+ .+.++.++++|+++
T Consensus 149 a~~~-~g---~~~---~~----------------~~~~~~~~~l~~g~d~iG--g~p~~~~~~~~~~e~l~~~~~~A~~~ 203 (426)
T PRK07572 149 AFPQ-DG---VLR---SP----------------GAVDNLERALDMGVDVVG--GIPHFERTMADGAESVRLLCEIAAER 203 (426)
T ss_pred eccC-hh---hcc---Cc----------------cHHHHHHHHHHcCCCEEe--CCCCCccccchHHHHHHHHHHHHHHc
Confidence 1100 00 000 00 122223332222222221 1233333333 38999999999999
Q ss_pred CCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCCh-------hHHHHHHhcCCeEEECccchh
Q 011766 248 KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH-------TEIGLLSRAGVKVSHCPASAM 320 (478)
Q Consensus 248 ~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~-------~~~~~~~~~~~~~~~~p~~~~ 320 (478)
|+++++|+.+.......... .....+...+..+ +..+.||..+++ ++++++++.|+.++.||.+++
T Consensus 204 g~~v~~H~~e~~~~~~~~~~------~~~~~~~~~G~~~-~v~~~H~~~l~~~~~~~~~~~~~~la~~g~~vv~~P~~n~ 276 (426)
T PRK07572 204 GLRVDMHCDESDDPLSRHIE------TLAAETQRLGLQG-RVAGSHLTSMHSMDNYYVSKLIPLMAEAGVNAIANPLINI 276 (426)
T ss_pred CCCeEEEECCCCChhHHHHH------HHHHHHHHhCCCC-CEEEEccchhhcCCHHHHHHHHHHHHHcCCeEEECchhhh
Confidence 99999999776554332211 1234455667666 788999988765 669999999999999999886
Q ss_pred hc----------cCCCcHHHHHHCCCcEEEcCCCCC----CCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHH
Q 011766 321 RM----------LGFAPIKEMLHADICVSLGTDGAP----SNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 386 (478)
Q Consensus 321 ~~----------~~~~~~~~~~~~gv~v~~gsD~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al 386 (478)
.+ .+..++++++++|+++++|||+.. ..+..++++.++.+...... .. ...++++|
T Consensus 277 ~l~~~~~~~~~~~g~~~v~~l~~~GV~v~lGtD~~~~~~~~~~~~~~~e~~~~~~~~~~~--------~~--~~~l~~~l 346 (426)
T PRK07572 277 TLQGRHDTYPKRRGMTRVPELMAAGINVAFGHDCVMDPWYSLGSGDMLEVAHMGLHVAQM--------TG--QDAMRACF 346 (426)
T ss_pred hhcCCCCCCCCCCCCcCHHHHHHCCCcEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHcC--------CC--HHHHHHHH
Confidence 54 367789999999999999999742 22356788777764433210 00 12356788
Q ss_pred HHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCe
Q 011766 387 RMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKK 458 (478)
Q Consensus 387 ~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~ 458 (478)
+++|.+||++||+++ .| |++||.||||++|.. ||...+.. ..++..||++|++|++...
T Consensus 347 ~~aT~~~A~~lgl~~-~g-i~~G~~ADlvl~d~~--------~p~e~i~~---~~~~~~V~~~G~~v~~~~~ 405 (426)
T PRK07572 347 DAVTVNPARIMGLEG-YG-LEPGCNADLVLLQAR--------DPIEAIRL---RAARLAVIRRGKVIARTPP 405 (426)
T ss_pred HHhhcchHHhhCCCC-cC-CCCCCcCCEEEEeCC--------CHHHHHHh---cCCceEEEECCEEEeccCC
Confidence 899999999999976 67 999999999999952 23332211 2478999999999988754
|
|
| >PRK14085 imidazolonepropionase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=295.20 Aligned_cols=346 Identities=19% Similarity=0.280 Sum_probs=224.3
Q ss_pred ceeEEEe-cEEEeeCCCC-----ceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchh
Q 011766 19 STMILHN-AVIVTMDKES-----RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQ 92 (478)
Q Consensus 19 ~~~~i~n-~~I~t~d~~~-----~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~ 92 (478)
++++|+| +.|+|+|+.. .++++++|+|+||+|++|++..+. + .++++||++|++|+|||||+|+|+...
T Consensus 1 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~----~-~~~~~iD~~g~~v~PGlId~H~Hl~~~ 75 (382)
T PRK14085 1 MSTLITNIGELVTNDPELGEGPLGVLRDAAVVVEGGRVAWVGPAADA----P-AADERVDAGGRAVLPGFVDSHSHLVFA 75 (382)
T ss_pred CcEEEEcccEEEcCCCcccCCCcccccCcEEEEECCEEEEEcCCccC----C-CCCeEEeCCCCEEecCeEecCcCcccc
Confidence 4689999 5999987654 678899999999999999985322 1 356899999999999999999999654
Q ss_pred hhccccCCCCchHHhhhcc---------ccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC--HHHHHHHHHHhC
Q 011766 93 LAKGIADDVDLMTWLHDRI---------WPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH--VSEMAKAVELLG 161 (478)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~--~~~~~~~~~~~g 161 (478)
..++. .+.+++.+.. +.....++.++.+......+.+++++|+|++++.++.. .....+..+..+
T Consensus 76 ~~r~~----~~~~~~~~~~~~~~~i~~~~~~~~~~t~e~~~~~a~~~~~~~l~~G~Ttv~~~~~~~~~~~~~~~~~~~~~ 151 (382)
T PRK14085 76 GDRSA----EFAARMAGEPYSAGGIRTTVAATRAASDEELRANVRRLVAEALRQGTTTVETKTGYGLTVEDEARSARIAA 151 (382)
T ss_pred CChhH----HHHhhhcCCCccCCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCceEEEcCCcCCCCHHHHHHHHHHHH
Confidence 33321 1111111111 12234567788888888899999999999999975432 333333222222
Q ss_pred CeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHH
Q 011766 162 LRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETR 241 (478)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (478)
+.... .....++..+..+.. .....+. .........+.. ....+++.... ...+++.+++++
T Consensus 152 -~~~~~-~~~~g~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~----~~~~idi~~~~---~~~~~~~l~~~~ 213 (382)
T PRK14085 152 -EFTDE-VTFLGAHVVPPEYAG-DADEYVD--------LVCGPMLDAVAP----HARWIDVFCER---GAFDEDQSRRVL 213 (382)
T ss_pred -Hhhhc-ceeeccccCCcccCC-CHHHHHH--------HHHHHHHHHHHH----hCCeEEEEecC---CCCCHHHHHHHH
Confidence 11000 000111111111110 0000000 000001111211 13344443321 135788999999
Q ss_pred HHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhh
Q 011766 242 DMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMR 321 (478)
Q Consensus 242 ~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 321 (478)
+.+++.|+++.+|+.+.... ..+..+...+.. .+.|+.++++++++++++.++.+++||.+++.
T Consensus 214 ~~a~~~g~~v~~H~~~~~~~------------~~v~~~~~~g~~----~i~H~~~l~~~~~~~la~~gv~~~~~P~~~~~ 277 (382)
T PRK14085 214 TAGRAAGLGLRVHGNQLGPG------------PGVRLAVELGAA----SVDHCTYLTDADVDALAGSGTVATLLPGAEFS 277 (382)
T ss_pred HHHHHcCCCeEEEeCcccCC------------hHHHHHHHcCCC----cHHHhCCCCHHHHHHHHHcCCEEEECcHHHHh
Confidence 99999999999999753211 012222333332 37899999999999999999999999998775
Q ss_pred c-cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 011766 322 M-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWD 400 (478)
Q Consensus 322 ~-~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~ 400 (478)
. .+..|+++++++|+++++|||+++.. .+...+........ ...+++++++++++|.+||+++|++
T Consensus 278 ~~~~~~~~~~l~~aGv~v~lgsD~~~~~---~~~~~~~~~~~~~~----------~~~~l~~~~al~~aT~~~A~~lg~~ 344 (382)
T PRK14085 278 TRQPYPDARRLLDAGVTVALASDCNPGS---SYTSSMPFCVALAV----------RQMGMTPAEAVWAATAGGARALRRD 344 (382)
T ss_pred cCCCCchHHHHHHCCCcEEEEeCCCCCC---ChHHHHHHHHHHHH----------HhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 5 46789999999999999999985431 22222322211100 1236999999999999999999996
Q ss_pred CCccccccCccccEEEEcCCC
Q 011766 401 NDIGSLEAGKKADMVVVDPFS 421 (478)
Q Consensus 401 ~~~G~l~~G~~ADlvv~d~~~ 421 (478)
.+|+|++|+.|||+++|.+.
T Consensus 345 -~~G~l~~G~~ADlvv~d~~~ 364 (382)
T PRK14085 345 -DVGVLAVGARADLHVLDAPS 364 (382)
T ss_pred -CCCCcCCCCCCCEEEEcCCC
Confidence 48999999999999999973
|
|
| >TIGR02033 D-hydantoinase D-hydantoinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=302.44 Aligned_cols=381 Identities=17% Similarity=0.229 Sum_probs=237.1
Q ss_pred eEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCC
Q 011766 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (478)
Q Consensus 21 ~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~ 100 (478)
++|+|++|+++++ ..+++|+|+||+|++|++.... ..+.++||++|++|+|||||+|+|+....
T Consensus 1 ~li~n~~vv~~~~----~~~~~V~I~dg~I~~Ig~~~~~-----~~~~~vIDa~G~~vlPGlID~H~H~~~~~------- 64 (454)
T TIGR02033 1 KLIRGGTVVNADD----VFQADVLIEGGKIVAVGRNLSP-----PDAVEEIDATGKYVMPGGIDVHTHLEMPF------- 64 (454)
T ss_pred CEEECcEEEcCCC----ceEEEEEEECCEEEEecCCCCC-----CCCCcEEECCCCEEecCEecceeccCccc-------
Confidence 4799999997543 2468999999999999874321 12458999999999999999999994311
Q ss_pred CCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC----HHHHHHHHHHhCCeEEEecccccCCCC
Q 011766 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH----VSEMAKAVELLGLRACLVQSTMDCGEG 176 (478)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~ 176 (478)
......++.+. ..+.++++||||+++++... .....+........ ....+.+..
T Consensus 65 --------------~~~~~~e~~~~----~s~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 122 (454)
T TIGR02033 65 --------------GGTVTADDFFT----GTKAAAAGGTTTIIDFALPHKGESLTEALETWHEKAEG----KSVIDYGFH 122 (454)
T ss_pred --------------CCCCCcchHHH----HHHHHHhCCCCEEEeCcCCCCCCCHHHHHHHHHHHhcc----CceEEEEEE
Confidence 01112222222 23456899999999976432 12222222221110 001111100
Q ss_pred CCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEecc
Q 011766 177 LPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVA 256 (478)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~ 256 (478)
..... .... ...+.++.+...+...++.+.+++..+.++.+.+.++++.+++++.++++|+
T Consensus 123 ~~~~~---~~~~---------------~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~- 183 (454)
T TIGR02033 123 MMITH---WNDE---------------VLEEHIPELVEEGITSFKVFMAYKNLLMVDDEELFEILKRAKELGALLQVHA- 183 (454)
T ss_pred ecccC---CcHH---------------HHHHHHHHHHhcCCcEEEEEeecCCCCCCCHHHHHHHHHHHHhCCCeEEEEc-
Confidence 00000 0000 1222233333334456777777777778899999999999999999999997
Q ss_pred CChhhhHHHhhh---cCCC-------CchH--------HHHhhhCCCCCCeeeeeeccC-ChhHHHHHHhcCC--eEEEC
Q 011766 257 EIPYENQVVMDT---RKVD-------HGTV--------TFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAGV--KVSHC 315 (478)
Q Consensus 257 ~~~~~~~~~~~~---~~~~-------~~~~--------~~l~~~~~~~~~~~i~h~~~~-~~~~~~~~~~~~~--~~~~~ 315 (478)
+........... .+.. ..+. ..+...+.++.+..+.|.+.- +-++++.+++.|+ .+.+|
T Consensus 184 E~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~e~~~v~~~~~~~~~~~~~~~i~H~s~~~~~~~i~~~~~~g~~vt~e~~ 263 (454)
T TIGR02033 184 ENGDVIAELQARLLAQGKTGPEYHALSRPPESEAEAVARAIALAALANAPLYVVHVSTASAVDEIAEAREKGQPVYGETC 263 (454)
T ss_pred CCHHHHHHHHHHHHHcCCCChhHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 544432211111 0110 0111 113333455667777777762 2467778888884 46799
Q ss_pred ccchh-----------hc-cC--CCc---------HHHHHHCCCcEEEcCCCCCCCCCcC------HH---------HHH
Q 011766 316 PASAM-----------RM-LG--FAP---------IKEMLHADICVSLGTDGAPSNNRMS------IV---------DEM 357 (478)
Q Consensus 316 p~~~~-----------~~-~~--~~~---------~~~~~~~gv~v~~gsD~~~~~~~~~------~~---------~~~ 357 (478)
|.+++ .. .+ .+| +.+++..|+.+++|||+.+++.... ++ .++
T Consensus 264 p~~l~~~~~~~~~~~~~~~~~~~~pPlr~~~~~~~l~~~l~~G~i~~igtDh~p~~~~~k~~~~~~~~~~~~~G~~g~e~ 343 (454)
T TIGR02033 264 PQYLLLDDTIYDKPGFEGAKYVCSPPLREKEDQDALWSALSSGALQTVGSDHCPFNFAQKKAIGKDDFTKIPNGGPGVEE 343 (454)
T ss_pred chheeecHHHhcCcccccceeEECCCCCChhhHHHHHHHhhcCCeEEEECCCCCCCHHHhhhcccCCHhhCCCCCchHHh
Confidence 98753 11 11 146 4489999999999999987642111 11 145
Q ss_pred HHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCc--------CC
Q 011766 358 YLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPV--------HD 429 (478)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~--------~d 429 (478)
....+..... ....++++++++++|.|||+++|+++++|+|++|++|||+|+|.+..+..+. .+
T Consensus 344 ~l~~l~~~~v--------~~~~~~~~~~~~~~t~~pa~~~gl~~~~G~l~~G~~AD~~i~d~~~~~~~~~~~~~~~~~~~ 415 (454)
T TIGR02033 344 RMTLLFDEGV--------ATGRITLEKFVELTSTNPAKIFNMYPRKGTIAVGSDADIVIWDPNRTTVISAETHHDNADYN 415 (454)
T ss_pred HHHHHHHHHH--------HcCCCCHHHHHHHHhhHHHHHcCCCCCCCccccCCcCCEEEEcCCcCeeechHHhhccCCCC
Confidence 4444433211 1124899999999999999999997778999999999999999986543332 23
Q ss_pred hhhhhhhccCCCCeeEEEEccEEEEECCeeeccc-HHHHHH
Q 011766 430 RITSLVYCMRTENVVSVMCNGQWVMKNKKILLLM-RGRLFQ 469 (478)
Q Consensus 430 ~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~-~~~~~~ 469 (478)
|+..... ..+|..||++|++||++|+++... .|++++
T Consensus 416 p~~g~~~---~g~v~~t~v~G~~v~~~g~~~~~~~~g~~~~ 453 (454)
T TIGR02033 416 PFEGFKV---QGAVVSVLSRGRVVVEDGQFVGTAGSGRFIK 453 (454)
T ss_pred cccCeEE---eeeEEEEEECCEEEEECCEEecCCCCcceec
Confidence 3333221 258999999999999999998654 477664
|
This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme. |
| >PRK08323 phenylhydantoinase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=308.61 Aligned_cols=381 Identities=17% Similarity=0.169 Sum_probs=237.5
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcccc
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~ 98 (478)
++++|+|++|+++++ ..+++|+|+||+|++|++. .+.++||++|++|+|||||+|+|+....
T Consensus 1 ~d~li~n~~v~~~~~----~~~~~v~I~~g~I~~i~~~---------~~~~viD~~g~~v~PGlID~H~H~~~~~----- 62 (459)
T PRK08323 1 MSTLIKNGTVVTADD----TYKADVLIEDGKIAAIGAN---------LGDEVIDATGKYVMPGGIDPHTHMEMPF----- 62 (459)
T ss_pred CcEEEECCEEEcCCC----ceEEEEEEECCEEEEEecC---------CCceEEECCCCEEeccEEeeeecccccc-----
Confidence 468999999997532 3457999999999999864 1458999999999999999999984310
Q ss_pred CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC----HHHHHHHHHHhCC-eEEEecccccC
Q 011766 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH----VSEMAKAVELLGL-RACLVQSTMDC 173 (478)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~----~~~~~~~~~~~g~-~~~~~~~~~~~ 173 (478)
......++.+ ...+.++++||||++++.... .....+....... ...........
T Consensus 63 ----------------~~~~~~e~~~----~~~~~a~~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 122 (459)
T PRK08323 63 ----------------GGTVSSDDFE----TGTRAAACGGTTTIIDFALQPKGQSLREALEAWHGKAAGKAVIDYGFHMI 122 (459)
T ss_pred ----------------CCccccCcHH----HHHHHHHhCCCCEEEeCcCCCCCCChHHHHHHHHHHhccCceEEEEEEEE
Confidence 0011111211 223456799999999975322 1122222111100 11111000000
Q ss_pred CCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeE
Q 011766 174 GEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHM 253 (478)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~ 253 (478)
. .. .. . ...+.++++...+...++.+..++..+..+.+.+.++++.++++|.++++
T Consensus 123 ---~----~~-~~----~------------~~~~~~~~~~~~g~~~ik~~~~~~~~~~~s~~~l~~~~~~a~~~g~~v~~ 178 (459)
T PRK08323 123 ---I----TD-WN----E------------VVLDEMPELVEEGITSFKLFMAYKGALMLDDDELLRALQRAAELGALPMV 178 (459)
T ss_pred ---e----cC-Cc----H------------HHHHHHHHHHHcCCCEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCEEEE
Confidence 0 00 00 0 22222333333334557776666666788999999999999999999999
Q ss_pred eccCChhhhHHHhhhc---CC-------CCchH--------HHHhhhCCCCCCeeeeeeccC-ChhHHHHHHhcCCe--E
Q 011766 254 HVAEIPYENQVVMDTR---KV-------DHGTV--------TFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAGVK--V 312 (478)
Q Consensus 254 H~~~~~~~~~~~~~~~---~~-------~~~~~--------~~l~~~~~~~~~~~i~h~~~~-~~~~~~~~~~~~~~--~ 312 (478)
|+ +............ +. ...+. ..+...+..+.+..+.|.... +-+.++.+++.|+. +
T Consensus 179 H~-e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~~a~~~~~~~~i~H~s~~~~~~~i~~ak~~g~~vt~ 257 (459)
T PRK08323 179 HA-ENGDAIAYLQAKLLAEGKTGPEYHALSRPPEVEGEATNRAIMLAELAGAPLYIVHVSCKEALEAIRRARARGQRVFG 257 (459)
T ss_pred Ec-CChHHHHHHHHHHHHcCCCChhhhhccCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCeEEE
Confidence 96 4443322211110 10 00111 134445666777888887753 33467777888865 5
Q ss_pred EECcc------chhhcc----C-----CCc---------HHHHHHCCCcEEEcCCCCCCCCCcCHH--------------
Q 011766 313 SHCPA------SAMRML----G-----FAP---------IKEMLHADICVSLGTDGAPSNNRMSIV-------------- 354 (478)
Q Consensus 313 ~~~p~------~~~~~~----~-----~~~---------~~~~~~~gv~v~~gsD~~~~~~~~~~~-------------- 354 (478)
.+||. .++... + .+| +.+++++|+.++++||+.+++...+++
T Consensus 258 e~~p~~l~l~~~~~~~~~~~~g~~~k~~pPlr~~~~~~~l~~~l~~G~i~~i~sDh~p~~~~~~~~~~~~~~~~~p~G~~ 337 (459)
T PRK08323 258 ETCPQYLLLDESEYDGPDWFEGAKYVMSPPLRDKEHQDALWRGLQDGDLQVVATDHCPFCFEQKKQLGRGDFTKIPNGTP 337 (459)
T ss_pred EcCccceeecHHHhcCCccccccceEECCCCCChHHHHHHHHHhhcCCeeEEECCCCCCChHHhcccccCCHhhCCCCcc
Confidence 68998 444321 2 134 558999999999999998875333221
Q ss_pred -HHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhh
Q 011766 355 -DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITS 433 (478)
Q Consensus 355 -~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~ 433 (478)
.+++...+..... ....++++++++++|.|||+++|+.+++|+|++|++|||||+|.+..+..+.+++.+.
T Consensus 338 ~~e~~~~~l~~~~~--------~~~~~~~~~~~~~~t~~pA~~lgl~~~~G~l~~G~~ADlvi~d~~~~~~v~~~~~~s~ 409 (459)
T PRK08323 338 GVEDRMPLLFSEGV--------MTGRITLNRFVELTSTNPAKIFGLYPRKGTIAVGADADIVIWDPNATKTISASTLHSN 409 (459)
T ss_pred hHhhhHHHHHHHHH--------HcCCCCHHHHHHHHhhHHHHHhCCCCCCcccCCCCcCCEEEEcCCcccccCHHHHhhc
Confidence 2333333332111 1234899999999999999999997778999999999999999986544444443332
Q ss_pred hhhcc-----CCCCeeEEEEccEEEEECCeeeccc-HHHHHHH
Q 011766 434 LVYCM-----RTENVVSVMCNGQWVMKNKKILLLM-RGRLFQL 470 (478)
Q Consensus 434 ~~~~~-----~~~~v~~v~v~G~~v~~~g~~~~~~-~~~~~~~ 470 (478)
..+.. ...+|.+||++|++++++|+++... .|++++.
T Consensus 410 ~~~s~~~g~~~~g~v~~viv~G~~v~~~g~~~~~~~~G~~~~~ 452 (459)
T PRK08323 410 VDYNPYEGFEVTGWPVTTLSRGEVVVEDGEFRGKAGHGRFLKR 452 (459)
T ss_pred CCCCcccCcEEeeeEEEEEECCEEEEECCEEeccCCCceEeeC
Confidence 21111 1257999999999999999998654 6887754
|
|
| >PRK05985 cytosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=286.66 Aligned_cols=368 Identities=17% Similarity=0.192 Sum_probs=235.2
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccc-
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI- 97 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~- 97 (478)
.+++|+|++|+++ . ..+|+|++|+|++|++..+. ..+.++||++|++|+|||||+|+|+........
T Consensus 2 ~~~~i~~~~i~~~--~-----~~~v~i~~g~i~~i~~~~~~-----~~~~~~id~~g~~v~Pg~iD~h~h~~~~~~~~~~ 69 (391)
T PRK05985 2 TDLLFRNVRPAGG--A-----AVDILIRDGRIAAIGPALAA-----PPGAEVEDGGGALALPGLVDGHIHLDKTFWGDPW 69 (391)
T ss_pred CCEEEECcEECCC--C-----eeEEEEECCEEEEecCCCCC-----CCCCcEEECCCCEEecceEeeEEccCccccCCcc
Confidence 4678999999963 2 23999999999999986431 124579999999999999999999975432211
Q ss_pred ---cCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc-------CHHHHHHHHHHhCCeEEEe
Q 011766 98 ---ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-------HVSEMAKAVELLGLRACLV 167 (478)
Q Consensus 98 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~-------~~~~~~~~~~~~g~~~~~~ 167 (478)
.....+.+++..... ...++..+.+......+.+++++|+|+++++... ......+..+.. +..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~a~~~~~~~l~~G~t~vr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 145 (391)
T PRK05985 70 YPNEPGPSLRERIANERR--RRAASGHPAAERALALARAAAAAGTTAMRSHVDVDPDAGLRHLEAVLAARETL--RGLID 145 (391)
T ss_pred ccCCCCCCHHHHHHHHHH--hhccchhHHHHHHHHHHHHHHhcCcceEEeeEccCCCcccchHHHHHHHHHHh--hCccc
Confidence 112233444332210 1233444666677778899999999999775321 122333332222 21111
Q ss_pred cccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHc
Q 011766 168 QSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREF 247 (478)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 247 (478)
..... ++..... . .....+.+++....+.+ +...+.++....++++.+.+++++|+++
T Consensus 146 ~~~v~----~~~~g~~-----~------------~~~~~~ll~~~l~~g~~-~~gg~~p~~~~~~~~~~l~~~~~~A~~~ 203 (391)
T PRK05985 146 IQIVA----FPQSGVL-----S------------RPGTAELLDAALRAGAD-VVGGLDPAGIDGDPEGQLDIVFGLAERH 203 (391)
T ss_pred EEEEe----ccCcccc-----C------------CcCHHHHHHHHHHcCCC-EEeCCCCCCcCCCHHHHHHHHHHHHHHh
Confidence 11111 1110000 0 00223444444443332 3333455666778889999999999999
Q ss_pred CCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCC---h----hHHHHHHhcCCeEEECccchh
Q 011766 248 KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN---H----TEIGLLSRAGVKVSHCPASAM 320 (478)
Q Consensus 248 ~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~---~----~~~~~~~~~~~~~~~~p~~~~ 320 (478)
|+++++|+.+.......... ...+.....+. ..+..+.|+..+. + +.++++++.++.+++|+..
T Consensus 204 g~~i~~Hv~e~~d~~~~~~~------~~~e~~~~~g~-~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g~~v~~~~~~-- 274 (391)
T PRK05985 204 GVGIDIHLHEPGELGAFQLE------RIAARTRALGM-QGRVAVSHAFCLGDLPEREVDRLAERLAEAGVAIMTNAPG-- 274 (391)
T ss_pred CCCcEEeeCCCCCccHHHHH------HHHHHHHHhCC-CCCEehhhhhhhhcCCHHHHHHHHHHHHHcCCeEEEeCCC--
Confidence 99999998775432211100 02222333333 2367899998763 3 5579999999999888554
Q ss_pred hccCCCcHHHHHHCCCcEEEcCCCCCC----CCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHH
Q 011766 321 RMLGFAPIKEMLHADICVSLGTDGAPS----NNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKS 396 (478)
Q Consensus 321 ~~~~~~~~~~~~~~gv~v~~gsD~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~ 396 (478)
..+.+|++++++.|+++++|||+... ..+.++++.++.+..... ... ..+++++|+++|.+||++
T Consensus 275 -~~~~~~~~~l~~~Gv~v~lGtD~~~~~~~p~~~~~~~~~~~~~~~~~~--------~~~--~~~~~~al~~~T~~~A~~ 343 (391)
T PRK05985 275 -SVPVPPVAALRAAGVTVFGGNDGIRDTWWPYGNGDMLERAMLIGYRSG--------FRT--DDELAAALDCVTHGGARA 343 (391)
T ss_pred -CCCCCCHHHHHHCCCeEEEecCCCCCCCcCCCCCcHHHHHHHHHHHHc--------cCC--hHHHHHHHHHHcchhHHH
Confidence 26789999999999999999997532 134677877665443321 111 124689999999999999
Q ss_pred cCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECC
Q 011766 397 VLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNK 457 (478)
Q Consensus 397 lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g 457 (478)
+|+++ +.|++||.||||++|.+++. ..+. ....+..||++|++||++|
T Consensus 344 lg~~~--~~l~~G~~ADlvvld~~~~~--------~~~~---~~~~~~~v~~~G~~v~~~~ 391 (391)
T PRK05985 344 LGLED--YGLAVGARADFVLVDAETVA--------EAVV---AVPVRRLVVRGGRIVARDG 391 (391)
T ss_pred hCCcc--cCCCCCCcCCEEEECCCCHH--------HHHh---hCCcceEEEECCEEEecCC
Confidence 99965 35999999999999997331 1111 1245678999999999986
|
|
| >PRK12394 putative metallo-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=284.01 Aligned_cols=356 Identities=14% Similarity=0.163 Sum_probs=230.0
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccc
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~ 97 (478)
+++++|+|++|+++.. ....+++|+|++|+|++|++... ....++||++|++|+|||||+|+|+.....
T Consensus 2 ~~~~li~~~~i~~~~~--~~~~~~~i~i~~g~I~~i~~~~~------~~~~~viD~~g~~v~PGliD~H~H~~~~g~--- 70 (379)
T PRK12394 2 KNDILITNGHIIDPAR--NINEINNLRIINDIIVDADKYPV------ASETRIIHADGCIVTPGLIDYHAHVFYDGT--- 70 (379)
T ss_pred CccEEEECcEEECCCC--CcccccEEEEECCEEEEEcCCCC------CCCCeEEECCCCEEECCEEEeeecCCCCCc---
Confidence 4578999999996432 33456799999999999986421 124589999999999999999999842110
Q ss_pred cCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC---H---HHHHHHHHHhCCeEEEecccc
Q 011766 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH---V---SEMAKAVELLGLRACLVQSTM 171 (478)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~---~---~~~~~~~~~~g~~~~~~~~~~ 171 (478)
....++. ..++++||||+++++... . ..........|++.++.....
T Consensus 71 -----------------~~~~~~~----------~~~l~~G~Ttv~d~g~~~~~~~~~~~~~~~a~~~~gira~l~~~~~ 123 (379)
T PRK12394 71 -----------------EGGVRPD----------MYMPPNGVTTVVDAGSAGTANFDAFYRTVICASKVRIKAFLTVSPP 123 (379)
T ss_pred -----------------ccccCHH----------HHHHhCCccEEEECCCCCcccHHHHHHHHhhhhcceeeeEEeeecc
Confidence 0011111 227899999999986432 1 111123455667777664443
Q ss_pred cCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCce
Q 011766 172 DCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGI 251 (478)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v 251 (478)
.... ............ ...+..++++++..... .+++.+.+......+++.+.+.+++|+++|+++
T Consensus 124 ~~~~---~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~-g~ki~~~~~~~~~~~~~~l~~~~~~A~~~g~~v 189 (379)
T PRK12394 124 GQTW---SGYQENYDPDNI----------DENKIHALFRQYRNVLQ-GLKLRVQTEDIAEYGLKPLTETLRIANDLRCPV 189 (379)
T ss_pred cccc---cCcccccChhHC----------CHHHHHHHHHHCcCcEE-EEEEEEecccccccchHHHHHHHHHHHHcCCCE
Confidence 2210 000000000000 01255555655544322 223222222212457889999999999999999
Q ss_pred eEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCC-----------hhHHHHHHhcCCeE-EECccch
Q 011766 252 HMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN-----------HTEIGLLSRAGVKV-SHCPASA 319 (478)
Q Consensus 252 ~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~-----------~~~~~~~~~~~~~~-~~~p~~~ 319 (478)
++|+.+...+.. ...+.+....+..||.+.+ .+++..+++.|+.+ +.++.++
T Consensus 190 ~iH~~e~~~~~~----------------~~~~~l~~g~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~g~s~ 253 (379)
T PRK12394 190 AVHSTHPVLPMK----------------ELVSLLRRGDIIAHAFHGKGSTILTEEGAVLAEVRQARERGVIFDAANGRSH 253 (379)
T ss_pred EEEeCCCCccHH----------------HHHHhcCCCCEEEecCCCCCCCcCCCCCCChHHHHHHHhCCeEEEecCCccc
Confidence 999987543211 1223333445677877622 34667788889876 4455443
Q ss_pred hhccCCCcHHHHHHCCC-cEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcC
Q 011766 320 MRMLGFAPIKEMLHADI-CVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVL 398 (478)
Q Consensus 320 ~~~~~~~~~~~~~~~gv-~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lg 398 (478)
. ......+++++|+ ++++|||+.++++..+++..|.. ...+. ...+++++++++++|.|||+++|
T Consensus 254 ~---~~~~~~~~l~~G~~~~~lgTD~~~~~~~~~~~~~l~~--~~~~~---------~~~~~~~~~~~~~at~~~a~~~g 319 (379)
T PRK12394 254 F---DMNVARRAIANGFLPDIISSDLSTITKLAWPVYSLPW--VLSKY---------LALGMALEDVINACTHTPAVLMG 319 (379)
T ss_pred c---chHHHHHHHHCCCCceEEECCCCCCCcccCccchHHH--HHHHH---------HHcCCCHHHHHHHHHHHHHHHhC
Confidence 2 2344568899995 99999999876544343333322 11111 12369999999999999999999
Q ss_pred CCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEEC
Q 011766 399 WDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKN 456 (478)
Q Consensus 399 l~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~ 456 (478)
+++++|+|++|+.|||+++|.+.... +..|+....++..+...|.+||++|++||++
T Consensus 320 ~~~~~G~i~~G~~ADl~~~~~~~~~~-~~~d~~g~~~~~~~~~~v~~t~v~G~~v~~~ 376 (379)
T PRK12394 320 MAAEIGTLAPGAFADIAIFKLKNRHV-EFADIHGETLTGTHVLVPQMTIKSGEILYRQ 376 (379)
T ss_pred CCCCCCccCCCCccCEEEEecCcCcc-eeccCCCCEEEeeeecceEEEEECCEEEEec
Confidence 97567999999999999999986544 5577777777766667899999999999985
|
|
| >cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=287.15 Aligned_cols=351 Identities=22% Similarity=0.288 Sum_probs=226.8
Q ss_pred EEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccc-----cCCCCchHHhhhc---cc--
Q 011766 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI-----ADDVDLMTWLHDR---IW-- 112 (478)
Q Consensus 43 v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~-----~~~~~~~~~~~~~---~~-- 112 (478)
|+|+||+|++|++..+.+.. ...+.++||++|++|+|||||+|+|++....++. ..+.++.+|+... .+
T Consensus 1 i~i~~g~I~~ig~~~~~~~~-~~~~~~~iD~~G~~v~Pg~vn~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (371)
T cd01296 1 IAIRDGRIAAVGPAASLPAP-GPAAAEEIDAGGRAVTPGLVDCHTHLVFAGDRVDEFAARLAGASYEEILAAGGGILSTV 79 (371)
T ss_pred CEEECCEEEEEeCchhcccc-cCCCceEEECCCCEEecceeecCCCCcCCCCcHHHHHHHHCCCCHHHHHHcCCChHHHH
Confidence 57999999999985432110 0124579999999999999999999987544321 1345667777541 12
Q ss_pred cccCCCChHHHHHHHHHHHHHHHhcCcceeecCC--ccC---HHHHHHHHHHhCCe--EEEecccccCCCCCCCcccccC
Q 011766 113 PYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG--GQH---VSEMAKAVELLGLR--ACLVQSTMDCGEGLPASWAVRT 185 (478)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~--~~~---~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~ 185 (478)
.....++.++.+......+.+++++|||++++.. +.. .....+.+...+.+ ..+...... +..++.....
T Consensus 80 ~~~~~~~~~d~~~~a~~~~~~~~~~Gvt~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~-~~~~p~~~~~-- 156 (371)
T cd01296 80 RATRAASEDELFASALRRLARMLRHGTTTVEVKSGYGLDLETELKMLRVIRRLKEEGPVDLVSTFLG-AHAVPPEYKG-- 156 (371)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHCCceEEEecccCCCCHHHHHHHHHHHHHHHhhCCCceEeeeee-cccCCcccCC--
Confidence 3345677788888888999999999999998731 111 11223333333321 111111110 1111110000
Q ss_pred CcccCCCCCCccccccchhHHHHHHHhc-CCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHH
Q 011766 186 TDDCIQPDSSISFNFVSSSQKELYAKHH-HAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQV 264 (478)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~ 264 (478)
.+... .....+.++.+. ......++. .+... ..+.+.+.++++.|+++|+++++|+.+.....
T Consensus 157 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~-- 220 (371)
T cd01296 157 REEYI-----------DLVIEEVLPAVAEENLADFCDV-FCEKG--AFSLEQSRRILEAAKEAGLPVKIHADELSNIG-- 220 (371)
T ss_pred hHHHH-----------HHHHHHHHHHHHHhCCCCEEEE-eecCC--ccCHHHHHHHHHHHHHCCCeEEEEEcCcCCCC--
Confidence 00000 001223333322 122233333 22222 34578999999999999999999998743211
Q ss_pred HhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCCCcHHHHHHCCCcEEEcCC
Q 011766 265 VMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTD 343 (478)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~gv~v~~gsD 343 (478)
........+ ...+.|+.++++++++++++.++.+++||.+++.. .+..|+++++++|+++++|||
T Consensus 221 ----------~~~~~~~~g----~~~i~H~~~~~~~~i~~la~~g~~v~~~P~~~~~l~~~~~~~~~l~~~Gv~v~lgsD 286 (371)
T cd01296 221 ----------GAELAAELG----ALSADHLEHTSDEGIAALAEAGTVAVLLPGTAFSLRETYPPARKLIDAGVPVALGTD 286 (371)
T ss_pred ----------HHHHHHHcC----CCeeHHhcCCCHHHHHHHHHcCCeEEEChHHHHHhCCCCCCHHHHHHCCCcEEEecC
Confidence 112222222 23478999999999999999999999999988765 457899999999999999999
Q ss_pred CCCCCCC-cCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCC
Q 011766 344 GAPSNNR-MSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSW 422 (478)
Q Consensus 344 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~ 422 (478)
+.+.... .+++..++.+... .+++++++++++|.|||+++|+++++|+|++|+.|||||+|.+++
T Consensus 287 ~~p~~~~~~~l~~~~~~~~~~--------------~~l~~~~al~~aT~~~A~~lg~~~~~G~i~~G~~ADlvv~d~~~~ 352 (371)
T cd01296 287 FNPGSSPTSSMPLVMHLACRL--------------MRMTPEEALTAATINAAAALGLGETVGSLEVGKQADLVILDAPSY 352 (371)
T ss_pred CCCCCChHHHHHHHHHHHHHh--------------cCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCCcCEEEECCCch
Confidence 7443211 1234444433321 259999999999999999999987899999999999999999843
Q ss_pred CCCCcCChhhhhhhccCCCCeeEEEEcc
Q 011766 423 PMVPVHDRITSLVYCMRTENVVSVMCNG 450 (478)
Q Consensus 423 ~~~~~~d~~~~~~~~~~~~~v~~v~v~G 450 (478)
. .+++......|..||++|
T Consensus 353 ~---------~~~~~~~~~~v~~v~~~G 371 (371)
T cd01296 353 E---------HLAYRFGVNLVEYVIKNG 371 (371)
T ss_pred H---------hhhhhcCCCCceEEEeCc
Confidence 2 223333456799999998
|
In bacteria, the enzyme is part of histidine utilization (hut) operon. |
| >COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=284.10 Aligned_cols=373 Identities=21% Similarity=0.253 Sum_probs=223.3
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCCh-hhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcc
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSA-DILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~-~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~ 96 (478)
...+.+++++.++. .+.++++.|+|+||||+.||+.. +. +.+.++||++|++|+|||||+|+|+.....+.
T Consensus 9 ~~~~~~~~~~~~~~---~~~i~~~~v~i~~GkI~~vg~~~~~~-----~~~~~viD~~G~~V~PGLID~HtHl~~~~~~~ 80 (406)
T COG1228 9 IAMLATLAGRGLPG---LGIIEDGAVLIEDGKIVAVGPEEIDI-----PAGAEVIDAKGKTVTPGLIDAHTHLGFGGSRG 80 (406)
T ss_pred hhhheeeccccCCC---cceeecceEEEECCEEEEecCcccCC-----CCCCeEEeCCCCEEccceeeccccccccCCcc
Confidence 44567888888854 34566799999999999999873 22 23579999999999999999999997644332
Q ss_pred ccC-----CCCchHHhh--hccccccCCCCh---HHHHHHHHHHHHHHHhcCcceeecCCccCHHH-----HHHHHHHhC
Q 011766 97 IAD-----DVDLMTWLH--DRIWPYESNMTE---EDSYISTLLCGIELIHSGVTCFAEAGGQHVSE-----MAKAVELLG 161 (478)
Q Consensus 97 ~~~-----~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~-----~~~~~~~~g 161 (478)
.-. ..++...+. +..++....+.. ...+.........++.+|+|+.....+..... ..+.....+
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~gi~~~~~~~~~a~~~g~~~~~~~~l~~~~~~g~~~~e~~~~~g~~~~~e~~~~~~~~~~~ 160 (406)
T COG1228 81 GEFELREAGASYTEILAAGGGILPLDRGFTTARDGGLKATALPRLKRAGSAGVTTGERKSGYGLDLETEGGHLRAAAGLK 160 (406)
T ss_pred chhhhcccCccHHHHHHhcCChhhhHHHHHHHhhcchHHHHHHHHHHHHHcCCcccceeeeecccccccccccchhhhcc
Confidence 111 111111110 011111111111 11111233355567777777755432221110 001111111
Q ss_pred C--eEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHH-HHHhcCCCCCCeEEEEeccccccCCHHHHH
Q 011766 162 L--RACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKEL-YAKHHHAADGRIRIWFGIRQIMNATDRLLL 238 (478)
Q Consensus 162 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 238 (478)
. ..... ......++.+..... ..+ ......+. +...... +..+..-........+++++.
T Consensus 161 ~~~~~~~~-~t~~~~~~~~~~~~~--~r~------------~~~~g~~~~i~~~a~~--~l~~~~d~~~~~~~fs~~e~~ 223 (406)
T COG1228 161 ESRPVAVG-STPLAAHGVPEERKA--TRE------------AYVAGARLLIKIVATG--GLASFVDAFCEGGQFSPEEIR 223 (406)
T ss_pred cccccccc-CccccccCCcccccc--hHH------------HHHHHHHHHHHHHHhc--cccchhhccccccccCHHHHH
Confidence 0 00000 000000111110000 000 00011111 2222221 111111113344567888999
Q ss_pred HHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHh--cCCe-EEEC
Q 011766 239 ETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSR--AGVK-VSHC 315 (478)
Q Consensus 239 ~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~--~~~~-~~~~ 315 (478)
++++.+.+.|+++.+|+....... ..-..+. ..+.|+..++++..+.+++ .|+. ....
T Consensus 224 ~~l~~a~~~g~~v~~HA~~~~g~~---------------~A~~~g~----~s~~H~~~ld~~~~~~~a~~~~g~~~~~l~ 284 (406)
T COG1228 224 AVLAAALKAGIPVKAHAHGADGIK---------------LAIRLGA----KSAEHGTLLDHETAALLAEKGAGTPVPVLL 284 (406)
T ss_pred HHHHHHHHCCCceEEEecccchHH---------------HHHHhCc----ceehhhhhcCHhHHHHHhhccCCCcccccc
Confidence 999999999999999998755211 1111111 2368999999999999999 7763 3444
Q ss_pred ccchhhc--cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHH
Q 011766 316 PASAMRM--LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATING 393 (478)
Q Consensus 316 p~~~~~~--~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~p 393 (478)
|...... ....+++.++++|++++++||+++.....++..+|..++.. +||++|||+++|.||
T Consensus 285 p~~~~~l~e~~~~~~~~l~~~GV~vai~TD~~~~~~~~~l~~~m~l~~~~---------------gmtp~EaL~a~T~na 349 (406)
T COG1228 285 PRTKFELRELDYKPARKLIDAGVKVAIGTDHNPGTSHGSLALEMALAVRL---------------GMTPEEALKAATINA 349 (406)
T ss_pred chhhhhhhcccchhHHHHHHCCCEEEEEcCCCCCchhhHHHHHHHHHHHc---------------CCCHHHHHHHHHHHH
Confidence 5444333 45678999999999999999998774333444444444422 599999999999999
Q ss_pred HHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCe
Q 011766 394 AKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKK 458 (478)
Q Consensus 394 A~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~ 458 (478)
|++||+++++|+|++||+|||||||.|++... .|......+.+||++|+++++.+.
T Consensus 350 A~alG~~~~~Gsle~Gk~ADlvv~~~dp~~~i---------~y~~~~~~v~~v~k~G~~~~~~~~ 405 (406)
T COG1228 350 AKALGLADKVGSLEPGKDADLVVWDGDPLADI---------PYFLGLNKVEAVIKDGKVVYERGS 405 (406)
T ss_pred HHHcCCccccccccCCCccCEEEEcCCChhhc---------cccccCCceEEEEECCEEeecCCC
Confidence 99999999999999999999999999854322 233345789999999999998764
|
|
| >cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=284.52 Aligned_cols=362 Identities=19% Similarity=0.158 Sum_probs=220.5
Q ss_pred eeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccC
Q 011766 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (478)
Q Consensus 20 ~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~ 99 (478)
+++|+|++|+++.+ .....++|.|+||+|++|++... ..+.++||++|++|+|||||+|+|+.....
T Consensus 1 d~~i~n~~v~~~~~--~~~~~~~i~I~~g~I~~i~~~~~------~~~~~~iD~~G~~v~PG~iD~H~H~~~~~~----- 67 (415)
T cd01297 1 DLVIRNGTVVDGTG--APPFTADVGIRDGRIAAIGPILS------TSAREVIDAAGLVVAPGFIDVHTHYDGQVF----- 67 (415)
T ss_pred CEEEECCEEECCCC--CccccceEEEECCEEEEEecCCC------CCCCeEEECCCCEEccCEeeeeecCCcccc-----
Confidence 47899999997543 33456799999999999986432 124589999999999999999999943110
Q ss_pred CCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc------CH-----------------------
Q 011766 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ------HV----------------------- 150 (478)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~------~~----------------------- 150 (478)
. ....+.++.+||||++++... ..
T Consensus 68 -------------------~--------~~~~~~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (415)
T cd01297 68 -------------------W--------DPDLRPSSRQGVTTVVLGNCGVSPAPANPDDLARLIMLMEGLVALGEGLPWG 120 (415)
T ss_pred -------------------c--------CcchhhHHhCcEEEEEeccccCccCCCChhhhhhhhhhhhcccccccccCCC
Confidence 0 001234678999999885321 01
Q ss_pred ----HHHHHHHHHhC--CeEEE--ecccccC-CCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeE
Q 011766 151 ----SEMAKAVELLG--LRACL--VQSTMDC-GEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIR 221 (478)
Q Consensus 151 ----~~~~~~~~~~g--~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (478)
....+.+...+ +.... ....+.. ..+... ...++..+. +..+++++..+.+...++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~l~~~~~g~~~---~~~~~~~~~------------~~~~l~~~al~~Ga~g~~ 185 (415)
T cd01297 121 WATFAEYLDALEARPPAVNVAALVGHAALRRAVMGLDA---REATEEELA------------KMRELLREALEAGALGIS 185 (415)
T ss_pred CCCHHHHHHHHHhcCCCcCeeeccCcHHHHHHHhCcCC---CCCCHHHHH------------HHHHHHHHHHHCCCeEEE
Confidence 01111111111 11000 0000000 000000 000011111 334444444454433343
Q ss_pred EEEeccccc--cCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCCh
Q 011766 222 IWFGIRQIM--NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH 299 (478)
Q Consensus 222 ~~~~~~~~~--~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~ 299 (478)
.+....+ ..+.+.+.++++.++++|..+.+|+.+........ ....+...+..+.+..+.|++....
T Consensus 186 --~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~e~~a---------v~~~~~~a~~~g~r~~i~H~ss~~~ 254 (415)
T cd01297 186 --TGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEGDSILEA---------LDELLRLGRETGRPVHISHLKSAGA 254 (415)
T ss_pred --cccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECcccccHHHH---------HHHHHHHHHHhCCCEEEEEEecCCC
Confidence 2322222 56888999999999999999999997653211110 2233444445567899999998765
Q ss_pred ----------hHHHHHHhcCCe--EEECccchhhccCCCcHHHHHHCCCcEEEcCCCCCCCC-CcCHHHHHHHHHHHhcc
Q 011766 300 ----------TEIGLLSRAGVK--VSHCPASAMRMLGFAPIKEMLHADICVSLGTDGAPSNN-RMSIVDEMYLASLINKG 366 (478)
Q Consensus 300 ----------~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~gv~v~~gsD~~~~~~-~~~~~~~~~~~~~~~~~ 366 (478)
+.++++++.|.. ..+||+.... ..++..+++. +.++++||+++... ....+..+. .+....
T Consensus 255 ~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~~~---~~~~~~l~~~-~~~~i~SDh~~~~~~~~~~~~~~~--~~l~~~ 328 (415)
T cd01297 255 PNWGKIDRLLALIEAARAEGLQVTADVYPYGAGS---EDDVRRIMAH-PVVMGGSDGGALGKPHPRSYGDFT--RVLGHY 328 (415)
T ss_pred cccchHHHHHHHHHHHHHhCCcEEEEeCCCCCCc---HHHHHHHHcC-CCceeeeCCCcCCCCCcchhCCHH--HHHHHH
Confidence 566777776554 4577753321 4677888877 99999999977421 111111111 111100
Q ss_pred cccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEE
Q 011766 367 REVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSV 446 (478)
Q Consensus 367 ~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v 446 (478)
......+|++++++++|.|||+++|+. ++|+|++|++|||||+|++.+...+..+ .+......|.+|
T Consensus 329 -------~~~~~~~~~~~~~~~~t~~pA~~~gl~-~~G~l~~G~~ADlvv~d~~~~~~~~~~~-----~~~~~~~~v~~v 395 (415)
T cd01297 329 -------VRERKLLSLEEAVRKMTGLPARVFGLA-DRGRIAPGYRADIVVFDPDTLADRATFT-----RPNQPAEGIEAV 395 (415)
T ss_pred -------hcccCCCCHHHHHHHHHHHHHHHhCCC-CCceeCCCCCCCEEEEcccccccccchh-----hhccCCCCceEE
Confidence 001124999999999999999999996 4699999999999999998654433222 112234579999
Q ss_pred EEccEEEEECCeeecccHHH
Q 011766 447 MCNGQWVMKNKKILLLMRGR 466 (478)
Q Consensus 447 ~v~G~~v~~~g~~~~~~~~~ 466 (478)
|++|++|++++++++..+|+
T Consensus 396 iv~G~~v~~~~~~~~~~~G~ 415 (415)
T cd01297 396 LVNGVPVVRDGAFTGARPGR 415 (415)
T ss_pred EECCEEEEECCEECCCCCCC
Confidence 99999999999998776653
|
|
| >PRK07583 cytosine deaminase-like protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=274.26 Aligned_cols=380 Identities=19% Similarity=0.180 Sum_probs=236.8
Q ss_pred CCCccceeEEEecEEEeeCCCC--------ceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeeccccc
Q 011766 14 SLGSSSTMILHNAVIVTMDKES--------RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNT 85 (478)
Q Consensus 14 ~~~~~~~~~i~n~~I~t~d~~~--------~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~ 85 (478)
+.+.+..++|+|+++-++.... ......+|.|+||||++|++.... ..+.++||++|++|+|||||+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~dg~i~~i~~~~~~-----~~~~~~id~~g~~v~Pg~id~ 80 (438)
T PRK07583 6 SLPESGRYWLKNARVPAALLEGGVPPGDTLEGLVLVDIEIADGKIAAILPAGGA-----PDELPAVDLKGRMVWPCFVDM 80 (438)
T ss_pred cCCCCCcEEEeccccccccccCccCCCcCCCCcEEEEEEEECCEEEEEecCCCC-----CCCCceecCCCCcccCCcccc
Confidence 3456778999999975432110 122356999999999999976421 125689999999999999999
Q ss_pred ccccchhhhcccc--CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCc---c----CHHHHHHH
Q 011766 86 HVHTSQQLAKGIA--DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---Q----HVSEMAKA 156 (478)
Q Consensus 86 H~H~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~---~----~~~~~~~~ 156 (478)
|+|+......... ...++.+.+..........++.++...........++..|+|+++..-. . ......+.
T Consensus 81 H~Hld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~Gtt~vRt~vd~~~~~~~~~~~~i~~~ 160 (438)
T PRK07583 81 HTHLDKGHIWPRSPNPDGTFPGALDAVTADREAHWSAEDLYRRMEFGLRCAYAHGTSAIRTHLDSFAPQAAISWEVFAEL 160 (438)
T ss_pred eeccccceecCCCCCCCCCHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhChhhEEeeeccCCCCcccHHHHHHHH
Confidence 9999876544321 2233444432111111123344555555667888899999996554221 1 11122233
Q ss_pred HHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEecccccc-CCHH
Q 011766 157 VELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMN-ATDR 235 (478)
Q Consensus 157 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 235 (478)
.+...-..-.....+...++... +.. . +..+.+.+. .+.+ +...... ...+
T Consensus 161 ~~~~~~~~~~~~v~~~p~~~~~~-------~~~-~------------eL~~~v~~~----~gv~----g~~~~~~~~~d~ 212 (438)
T PRK07583 161 REAWAGRIALQAVSLVPLDAYLT-------DAG-E------------RLADLVAEA----GGLL----GGVTYMNPDLDA 212 (438)
T ss_pred HHHhhccCeEEEEEecChhhccC-------chH-H------------HHHHHHHHc----CCEE----eCCCCCCCCHHH
Confidence 33322221111001000011000 000 1 222222221 1222 2221212 2567
Q ss_pred HHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCC-------hhHHHHHHhc
Q 011766 236 LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN-------HTEIGLLSRA 308 (478)
Q Consensus 236 ~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~-------~~~~~~~~~~ 308 (478)
.+.+++++|+++|+++.+|+.+........... ..+.....+. ..+..+.|+..++ ++.++++++.
T Consensus 213 ~l~~i~~lA~~~G~~v~vH~~E~~~~~~~~l~~------~~~~~~~~G~-~~~v~i~H~~~l~~~~~~~~~~~i~~la~~ 285 (438)
T PRK07583 213 QLDRLFRLARERGLDLDLHVDETGDPASRTLKA------VAEAALRNGF-EGKVTCGHCCSLAVQPEEQAQATIALVAEA 285 (438)
T ss_pred HHHHHHHHHHHhCCCcEEeECCCCCchHHHHHH------HHHHHHHhCC-CCCEEEEeccchhcCCHHHHHHHHHHHHHc
Confidence 899999999999999999997654432211110 1223333443 3468899999887 4789999999
Q ss_pred CCeEEECccchhhc-----------cCCCcHHHHHHCCCcEEEcCCCCCC----CCCcCHHHHHHHHHHHhcccccccCC
Q 011766 309 GVKVSHCPASAMRM-----------LGFAPIKEMLHADICVSLGTDGAPS----NNRMSIVDEMYLASLINKGREVFANG 373 (478)
Q Consensus 309 ~~~~~~~p~~~~~~-----------~~~~~~~~~~~~gv~v~~gsD~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (478)
|+.++.||.+++.. .+..++++++++|+++++|||+... ..+.++++.+..+.....
T Consensus 286 gv~vv~~P~~~~~l~~~~~~~~p~~~~~~~v~~l~~aGV~valGtD~~~d~~~p~g~~~~~~~~~~a~~~~~-------- 357 (438)
T PRK07583 286 GIAIVSLPMCNLYLQDRQPGRTPRWRGVTLVHELKAAGIPVAVASDNCRDPFYAYGDHDMLEVFREAVRILH-------- 357 (438)
T ss_pred CCeEEECcchhhhhcCCCcCCCCCCCCcchHHHHHHCCCeEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHHh--------
Confidence 99999999987643 2457899999999999999998421 123567776665543221
Q ss_pred CCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEE
Q 011766 374 TTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWV 453 (478)
Q Consensus 374 ~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v 453 (478)
.+.+++++++++|.+||+++|+++ +|+|++|+.||||++|.+++. + ++. ....++.||++|++|
T Consensus 358 ----~~~~~~~al~~~T~~~A~~lg~~~-~G~i~~G~~ADlvv~d~~~~~-----~----~~~--~~~~~~~V~~~G~~v 421 (438)
T PRK07583 358 ----LDHPYDDWPAAVTTTPADIMGLPD-LGRIAVGAPADLVLFKARSFS-----E----LLS--RPQSDRIVLRAGKPI 421 (438)
T ss_pred ----cCCcHHHHHHHHhHHHHHHcCCCC-CCCcCCCCCCCEEEEcCCCHH-----H----HHh--cCCCccEEEECCEEe
Confidence 136899999999999999999976 899999999999999998332 2 111 235678899999988
Q ss_pred EECC
Q 011766 454 MKNK 457 (478)
Q Consensus 454 ~~~g 457 (478)
....
T Consensus 422 ~~~~ 425 (438)
T PRK07583 422 DTTL 425 (438)
T ss_pred cccC
Confidence 7554
|
|
| >PRK10657 isoaspartyl dipeptidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=263.89 Aligned_cols=343 Identities=22% Similarity=0.265 Sum_probs=215.1
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcccc
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~ 98 (478)
|.++|+|++|++++. ..+++|+|+||+|++|++..+.+. ...+.++||++|++|+|||||+|+|+....
T Consensus 1 ~~~~i~~~~v~~~~~----~~~~~i~i~~g~I~~v~~~~~~~~--~~~~~~~id~~g~~v~PG~id~H~H~~~~~----- 69 (388)
T PRK10657 1 MFTLLKNAHVYAPED----LGKKDILIAGGKIIAIADNINIPD--IVPDIEVIDASGKILVPGFIDQHVHIIGGG----- 69 (388)
T ss_pred CeEEEEccEEECCCC----CcceEEEEECCEEEEecCCccccc--cCCCCeEEECCCCEEcccceeeeeCcccCC-----
Confidence 458999999997542 346799999999999987543211 012458999999999999999999984210
Q ss_pred CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCc-----cCH---HHHHHHHHHhCCeEEEeccc
Q 011766 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-----QHV---SEMAKAVELLGLRACLVQST 170 (478)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~-----~~~---~~~~~~~~~~g~~~~~~~~~ 170 (478)
... .| ...+. ...+.+++++|+||++++.+ .+. ....+.....|++.+.....
T Consensus 70 ~~~---~~---------~~~t~-------~~~~~~~~~~GvTTvvd~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~ 130 (388)
T PRK10657 70 GEG---GF---------STRTP-------EVQLSDLTEAGITTVVGLLGTDGITRSMESLLAKARALEEEGISAYMYTGS 130 (388)
T ss_pred CCc---cc---------ccCCH-------HHHHHHHHhCCceEEECCCCCCCCCCCHHHHHHHHHHHHhhCCEEEEEecC
Confidence 000 00 00111 13556789999999999763 122 23344555788998744322
Q ss_pred ccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCC-
Q 011766 171 MDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKT- 249 (478)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~- 249 (478)
+.. +..+. ..... +.....+++.. .+ +.....+.....+++.+.++.+.++..+.
T Consensus 131 ~~~----~~~~~----~~~~~------------~~~~~~~~~~g--~g--~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 186 (388)
T PRK10657 131 YHV----PVRTI----TGSIR------------KDIVLIDKVIG--VG--EIAISDHRSSQPTVEELARLAAEARVGGLL 186 (388)
T ss_pred CCC----Cchhh----hcchh------------hceehhhhhhC--cc--eeeeccCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 211 11000 00000 11111222221 11 23355566566788888888888775543
Q ss_pred -----ceeEeccCChhhhHHHhhhcCCCCchH-HHHhhhCCCCCCeeeeeecc---CChhHHHHHHhcCCeEEEC-ccch
Q 011766 250 -----GIHMHVAEIPYENQVVMDTRKVDHGTV-TFLDKIEFLQNNLLSAHTVW---VNHTEIGLLSRAGVKVSHC-PASA 319 (478)
Q Consensus 250 -----~v~~H~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~i~h~~~---~~~~~~~~~~~~~~~~~~~-p~~~ 319 (478)
++++|+.+.....+ .+ +++...+....+++..|+.. ..++.++.++ .|..+.+. +...
T Consensus 187 ~g~~~~i~vH~~~~~~~l~-----------~v~~~l~~~Gv~~~~~~~~H~~~~~~~~~~~~~~~~-~G~~~~v~~~~~~ 254 (388)
T PRK10657 187 SGKAGIVHVHMGDGKKGLQ-----------PLFELLENTDIPISQFLPTHVNRNEPLFEQALEFAK-KGGVIDLTTSDPD 254 (388)
T ss_pred cCCCCEEEEEeCCchHHHH-----------HHHHHHHhcCCCcceeeCcccCCCHHHHHHHHHHHH-cCCeEEEecCCCc
Confidence 79999885433222 22 34456666666677778776 3344444444 55555332 2222
Q ss_pred hhc----cCCCcHHHHHHCCC---cEEEcCCCCCCCCCc---------------CHHHHHHHHHHHhcccccccCCCCCC
Q 011766 320 MRM----LGFAPIKEMLHADI---CVSLGTDGAPSNNRM---------------SIVDEMYLASLINKGREVFANGTTDP 377 (478)
Q Consensus 320 ~~~----~~~~~~~~~~~~gv---~v~~gsD~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (478)
.+. .....+.+++++|+ +++++||+....+.. .+...+..+.. .
T Consensus 255 ~~~~~~~~~~~~l~~~~~~G~~~d~v~l~tD~~~~~~~~~~~g~~~~~g~~~~~~l~~~~~~~~~--------------~ 320 (388)
T PRK10657 255 FLGEGEVAPAEALKRALEAGVPLSRVTLSSDGNGSLPKFDEDGNLVGLGVGSVESLLEEVRELVK--------------D 320 (388)
T ss_pred ccccCccCHHHHHHHHHHcCCChhheEEECCCCCCCceeccCCCEeccCcCchhhHHHHHHHHHH--------------h
Confidence 221 12345778999998 789999974321111 13333332221 1
Q ss_pred CCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECC
Q 011766 378 AALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNK 457 (478)
Q Consensus 378 ~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g 457 (478)
.++|++++++++|.|||+.+|+++ +|+|++|++|||+++|.+ ..+..||++|++|+++|
T Consensus 321 ~gis~~~~l~~aT~npA~~lg~~~-~G~l~~G~~AD~vv~~~~--------------------~~~~~~~~~G~~v~~~~ 379 (388)
T PRK10657 321 EGLPLEDALKPLTSNVARFLKLNG-KGEILPGKDADLLVLDDD--------------------LRIEQVIAKGKLMVKDG 379 (388)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCC-CCccCCCCccCEEEECCC--------------------CCEEEEEECCEEEEECC
Confidence 369999999999999999999976 899999999999999943 47999999999999999
Q ss_pred eeecc
Q 011766 458 KILLL 462 (478)
Q Consensus 458 ~~~~~ 462 (478)
++++.
T Consensus 380 ~~~~~ 384 (388)
T PRK10657 380 KALVK 384 (388)
T ss_pred EEecc
Confidence 98653
|
|
| >TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=257.83 Aligned_cols=339 Identities=22% Similarity=0.280 Sum_probs=213.7
Q ss_pred eEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCC
Q 011766 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (478)
Q Consensus 21 ~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~ 100 (478)
++|+|++|++++. +...+|+|+||||++|++..+....++ ....++|++|++|+|||||.|+|+.... ..+
T Consensus 2 ~li~n~~v~~~~~----~~~~dvlI~~gkI~~Ig~~~~~~~~~~-~~~~i~d~~G~~v~PGlID~HvH~~~gg----~~~ 72 (389)
T TIGR01975 2 TLLKGAEVYAPEY----IGKKDILIANDKIIAIADEIPSTKDFV-PNCVVVGLEGMIAVPGFIDQHVHIIGGG----GEG 72 (389)
T ss_pred EEEECcEEEcCCc----CcceeEEEECCEEEEEcCCccccccCC-CCeEEECCCCCEEccCEeehhhcccccc----ccC
Confidence 4799999997632 345699999999999998754321111 1234556699999999999999985421 000
Q ss_pred CCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCc-----cC---HHHHHHHHHHhCCeEEEeccccc
Q 011766 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-----QH---VSEMAKAVELLGLRACLVQSTMD 172 (478)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~-----~~---~~~~~~~~~~~g~~~~~~~~~~~ 172 (478)
.. ...+++ ..+.+++++||||++++.+ .+ ..+..+.+...|++.+.....++
T Consensus 73 ~~-------------~~~~~e-------~~~~e~l~~GvTTv~d~~g~~~~~~~~~~~~a~~~al~~~Gir~~~~~g~~~ 132 (389)
T TIGR01975 73 GP-------------TTRTPE-------LTLSDITKGGVTTVVGLLGTDGITRHMESLLAKARALEEEGISCYMLTGAYH 132 (389)
T ss_pred CC-------------ccCCHH-------HHHHHHHhCCcEEEecCcccCccccChhhHHHHHHHHHHhCCEEEEEccccc
Confidence 00 011222 1367789999999999764 22 23567788999999987654432
Q ss_pred CCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcC----
Q 011766 173 CGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFK---- 248 (478)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~---- 248 (478)
. |..-. +.. .. ......+... +.-++...-+-....+.+.+.++.+.++..|
T Consensus 133 ~----p~~t~---t~~-~~------------~d~~~~d~ii----G~~~ia~sd~r~~~~~~~~l~~~~~~~~~~g~~~~ 188 (389)
T TIGR01975 133 V----PSRTI---TGS-VE------------SDLLLIDKVI----GVGEIAISDHRSAQPTVEHLTNMAAEARVGGLLGG 188 (389)
T ss_pred C----CCccc---ccc-hh------------hheeeehhhc----ccceEEEccCcCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 2 11000 000 00 0001111111 1112335555556678889999999999998
Q ss_pred Cc--eeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCC------hhHHHHHHhcCCeEEECccchh
Q 011766 249 TG--IHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN------HTEIGLLSRAGVKVSHCPASAM 320 (478)
Q Consensus 249 ~~--v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~------~~~~~~~~~~~~~~~~~p~~~~ 320 (478)
++ +++|....+...+.+.......+-++.. -|.++++ ++.++.+++ +..+.++-....
T Consensus 189 ~~g~~~vH~g~~~~~l~~l~~~~~~~di~~~~-------------f~pth~~r~~~l~~~~i~~~~~-gg~iDv~~~~~~ 254 (389)
T TIGR01975 189 KPGIVNFHVGDSKRALQPIYELVENTDVPITQ-------------FLPTHINRNVPLFEAGLEFAKK-GGTIDLTSSIDP 254 (389)
T ss_pred CCcEEEEEeCCchhhHHHHHHHHHhcCCChhh-------------eecCccCCCHHHHHHHHHHHHh-CCcEEEeCCCCc
Confidence 88 9999988776554433322211111111 1222333 345555555 444544422221
Q ss_pred h-c--cCCC---cHHHHHHCCCc---EEEcCCCCCCCCCc---------------CHHHHHHHHHHHhcccccccCCCCC
Q 011766 321 R-M--LGFA---PIKEMLHADIC---VSLGTDGAPSNNRM---------------SIVDEMYLASLINKGREVFANGTTD 376 (478)
Q Consensus 321 ~-~--~~~~---~~~~~~~~gv~---v~~gsD~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (478)
. . ...+ .++.++++|++ ++++||+..+.+.. +++.+|+.+..
T Consensus 255 ~~l~~~~~~~~~~~~~~~~~Gv~~~~i~isSD~~gs~p~~~~~g~~~~~g~g~~~sl~~~~~~lv~-------------- 320 (389)
T TIGR01975 255 QFRKEGEVAPAEGIKKALEAGVPLEKVTFSSDGNGSQPFFDENGELTGLGVGSFETLFEEVREAVK-------------- 320 (389)
T ss_pred cchhccccChHHHHHHHHHcCCCcceEEEEeCCCCCCCccccccccccCCcCcHHHHHHHHHHHHH--------------
Confidence 1 1 1223 45889999997 59999975321111 23444443322
Q ss_pred CCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEEC
Q 011766 377 PAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKN 456 (478)
Q Consensus 377 ~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~ 456 (478)
..++|+++||+++|.|||++||++ ++|+|++|++|||++||.+ ..+..||.+|++++++
T Consensus 321 ~g~ls~~eal~~~T~npA~~Lgl~-~~G~I~~G~~ADlvild~~--------------------~~i~~v~~~G~~v~~~ 379 (389)
T TIGR01975 321 DGDVPLEKALRVITSNVAGVLNLT-GKGEISPGNDADLVVLDPD--------------------LRIHSVIARGKLMVKD 379 (389)
T ss_pred hCCCCHHHHHHHHHHHHHHHhCCC-CCCeECCCCcCCEEEEcCC--------------------CCEEEEEECCEEEEEC
Confidence 124999999999999999999996 6899999999999999986 4789999999999999
Q ss_pred Ceeec
Q 011766 457 KKILL 461 (478)
Q Consensus 457 g~~~~ 461 (478)
|+++.
T Consensus 380 g~~~~ 384 (389)
T TIGR01975 380 GKACV 384 (389)
T ss_pred CEEEe
Confidence 99863
|
The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases. |
| >PRK06846 putative deaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=261.02 Aligned_cols=374 Identities=15% Similarity=0.119 Sum_probs=235.3
Q ss_pred eeEEEecEEEeeCCC------CceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhh
Q 011766 20 TMILHNAVIVTMDKE------SRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQL 93 (478)
Q Consensus 20 ~~~i~n~~I~t~d~~------~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~ 93 (478)
.+.|+|+++..+... .......+|.|++|+|++|++.... +..+.++||++|++|+|||||+|+|+....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~g~I~~i~~~~~~----~~~~~~~id~~g~~v~Pg~iD~H~H~~~~~ 80 (410)
T PRK06846 5 HYWLTNVRLETGFDYENGVIVQTETALCTLEIQDGKIVAIRPNKQV----PDATLPTYDANGLLMLPAFREMHIHLDKTY 80 (410)
T ss_pred ceEEEeeecCccccccCceecCCceeeEEEEEECCEEEEeecCCCC----CCCCCceEeCCCCEEecCEEeeeecccchh
Confidence 467788776543220 1223456999999999999975321 112457999999999999999999998755
Q ss_pred hccccC----CCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCH-------HHHHHHHHHhCC
Q 011766 94 AKGIAD----DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHV-------SEMAKAVELLGL 162 (478)
Q Consensus 94 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~-------~~~~~~~~~~g~ 162 (478)
.++... ...+.+|+....+...... +............++..|+|+++++..... ....+.......
T Consensus 81 ~~~~~~~~~~~~g~~~~l~~~~~~~~~~~--~~~~~~a~~~l~~~~~~Gtt~~r~~v~~~~~~~~~~~~a~~e~l~e~~~ 158 (410)
T PRK06846 81 YGGPWKACRPAKTIQDRIELEQKELPELL--PTTQERAEKLIELLQSKGATHIRSHCNIDPVIGLKNLENLQAALERYKD 158 (410)
T ss_pred hccchhhcCCcccHHHHHhhhhhhHHHhH--HHHHHHHHHHHHHHHhCCccEEEEEEeeCcccccchHHHHHHHHHHhhC
Confidence 443221 1223455533222111100 111122224556677889999876543211 222233333222
Q ss_pred eEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHH
Q 011766 163 RACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRD 242 (478)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (478)
........+. ..+.. . . .....+++....+...+. .+.+......+++.+.++++
T Consensus 159 ~v~~~~~a~~-~~g~~---------~--~------------~~~~lL~~al~~Ga~~i~-gl~p~~~~~~~~~~l~~~~~ 213 (410)
T PRK06846 159 GFTYEIVAFP-QHGLL---------R--S------------NSEPLMREAMKMGAHLVG-GVDPASVDGAIEKSLDTMFQ 213 (410)
T ss_pred cceEEEEecc-CcccC---------C--c------------cHHHHHHHHHHcCCCEEe-CCCCccCCcCHHHHHHHHHH
Confidence 2111111110 00000 0 1 333455555555444332 23445455677889999999
Q ss_pred HHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccC---ChhHHH----HHHhcCCeEEEC
Q 011766 243 MAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV---NHTEIG----LLSRAGVKVSHC 315 (478)
Q Consensus 243 ~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~---~~~~~~----~~~~~~~~~~~~ 315 (478)
+|+++|+++++|+.+.......... ..++.+...+... +..+.|+..+ ++++++ ++++.|+.++.+
T Consensus 214 lA~~~g~~v~~Hv~e~~~~~~~~~~------~~~~~~~~~gl~~-~v~~~H~~~l~~~~~~e~~~li~~la~~g~~v~~~ 286 (410)
T PRK06846 214 IAVDFNKGVDIHLHDTGPLGVATIK------YLVETTEEAQWKG-KVTISHAFALGDLNEEEVEELAERLAAQGISITST 286 (410)
T ss_pred HHHHhCCCcEEEECCCCChhHHHHH------HHHHHHHHhCCCC-CEEEEecchhhcCCHHHHHHHHHHHHHcCCeEEEe
Confidence 9999999999999876543322211 2466777777666 8999999975 666644 689999988865
Q ss_pred ccchhhccCCCcHHHHHHCCCcEEEcCCCCC----CCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhH
Q 011766 316 PASAMRMLGFAPIKEMLHADICVSLGTDGAP----SNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATI 391 (478)
Q Consensus 316 p~~~~~~~~~~~~~~~~~~gv~v~~gsD~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~ 391 (478)
.. ...+.+|+++|+++|+++++|||++. .....+++++++.+..... +... -++.++++++|.
T Consensus 287 ~~---~~~g~~p~~~l~~~Gv~v~lGtD~~~~~~~p~~~~d~~~~~~~~~~~~~--------~~~~--~~~~~~l~~~T~ 353 (410)
T PRK06846 287 VP---IGRLHMPIPLLHDKGVKVSLGTDSVIDHWSPFGTGDMLEKANLLAELYR--------WSDE--RSLSRSLALATG 353 (410)
T ss_pred CC---CCCCCCCHHHHHhCCCeEEEecCCCCCCCcCCCCCCHHHHHHHHHHHhc--------CCCH--HHHHHHHHHHcC
Confidence 43 22568999999999999999999752 2245679998886654432 1111 246689999998
Q ss_pred HHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEEC
Q 011766 392 NGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKN 456 (478)
Q Consensus 392 ~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~ 456 (478)
++ +.+++++.+|+|++||.|||||+|.+. +...+ .....+..||++|++||..
T Consensus 354 ~a-~~l~~~~~~G~l~~G~~ADlvlld~~~--------~~~~~---~~~~~v~~v~~~G~~v~~~ 406 (410)
T PRK06846 354 GV-LPLNDEGERVWPKVGDEASFVLVDASC--------SAEAV---ARQSPRTAVFHKGQLVAGS 406 (410)
T ss_pred Cc-cccccCCCccCCCCCCcccEEEEeCCC--------hHHHH---HhcCCceEEEECCEEEeee
Confidence 84 568877778999999999999999862 11111 1236899999999999985
|
|
| >PRK09236 dihydroorotase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=267.60 Aligned_cols=203 Identities=19% Similarity=0.237 Sum_probs=134.8
Q ss_pred HHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCee---eeeeccCChhHHHHHHhcCCeEE
Q 011766 237 LLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLL---SAHTVWVNHTEIGLLSRAGVKVS 313 (478)
Q Consensus 237 l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---i~h~~~~~~~~~~~~~~~~~~~~ 313 (478)
+.++++++++.++++++|..+.....+.+.. ....+.+.. ..|+.+++++++.. .+..+.
T Consensus 218 v~~~~~la~~~~~~~hi~h~st~~~~~~i~~--------------~~~~g~~vt~e~~~H~l~l~~~~~~~---~~~~~~ 280 (444)
T PRK09236 218 SSLAVSLAKKHGTRLHVLHISTAKELSLFEN--------------GPLAEKRITAEVCVHHLWFDDSDYAR---LGNLIK 280 (444)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCHHHHHHHHH--------------HHHCCCCEEEEEchhhhhcCHHHHhc---cCceEE
Confidence 4566777778888887766665444333221 111122332 24666777777663 477788
Q ss_pred ECccchhhc-cCCCcHHHHHHCCCcEEEcCCCCCCCC------------CcCHHHHHHHHHHHhcccccccCCCCCCCCC
Q 011766 314 HCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNN------------RMSIVDEMYLASLINKGREVFANGTTDPAAL 380 (478)
Q Consensus 314 ~~p~~~~~~-~~~~~~~~~~~~gv~v~~gsD~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 380 (478)
++|. ++. .+..++.+++++|+.+++|||+.++.. ....++.+ ...+.... .+.++
T Consensus 281 ~~Pp--lr~~~~~~~l~~~l~~G~i~~igtDh~p~~~~~k~~~~~~~~~G~~~~e~~-l~~l~~~v---------~~~~~ 348 (444)
T PRK09236 281 CNPA--IKTASDREALRQALADDRIDVIATDHAPHTWEEKQGPYFQAPSGLPLVQHA-LPALLELV---------HEGKL 348 (444)
T ss_pred ECCC--CCCHHHHHHHHHHHhCCCCcEEECCCCCCCHHHhcCCcccCCCCcccHHHH-HHHHHHHH---------HhcCC
Confidence 8886 332 456688899999999999999977521 11112211 11111110 12359
Q ss_pred CHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhc-----cCCCCeeEEEEccEEEEE
Q 011766 381 PAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYC-----MRTENVVSVMCNGQWVMK 455 (478)
Q Consensus 381 s~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~-----~~~~~v~~v~v~G~~v~~ 455 (478)
|++++++++|.|||+++|+. ++|+|++|++|||+|+|.+..+..+..++++...+. ....+|.+||++|++||+
T Consensus 349 ~~~~~~~~~t~~pA~~lgl~-~~G~l~~G~~ADlvi~d~~~~~~~~~~~~~s~~~~sp~~g~~~~g~v~~t~v~G~~v~~ 427 (444)
T PRK09236 349 SLEKVVEKTSHAPAILFDIK-ERGFIREGYWADLVLVDLNSPWTVTKENILYKCGWSPFEGRTFRSRVATTFVNGQLVYH 427 (444)
T ss_pred CHHHHHHHHHHhHHHhcCCC-CCCccccCCcCCEEEEcCCCCEEEchHHhcccCCCCCCCCCEEeeeEEEEEECCEEEEE
Confidence 99999999999999999994 469999999999999999865544544544433222 223579999999999999
Q ss_pred CCeeecccHHHHHH
Q 011766 456 NKKILLLMRGRLFQ 469 (478)
Q Consensus 456 ~g~~~~~~~~~~~~ 469 (478)
+|+++....|++++
T Consensus 428 ~g~~~~~~~G~~~~ 441 (444)
T PRK09236 428 NGQLVESCRGQRLE 441 (444)
T ss_pred CCEEccCcCceEee
Confidence 99988655666554
|
|
| >PRK06189 allantoinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-32 Score=266.12 Aligned_cols=377 Identities=18% Similarity=0.197 Sum_probs=219.2
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccc
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~ 97 (478)
+++++|+|++|+++++ ...++|+|+||+|++|++... ..+.++||++|++|+|||||+|+|+....
T Consensus 2 ~~~~~i~~~~v~~~~~----~~~~~v~i~~G~I~~i~~~~~------~~~~~~iD~~g~~vlPG~ID~H~H~~~~~---- 67 (451)
T PRK06189 2 MYDLIIRGGKVVTPEG----VYRADIGIKNGKIAEIAPEIS------SPAREIIDADGLYVFPGMIDVHVHFNEPG---- 67 (451)
T ss_pred CccEEEECCEEEcCCC----cEEEEEEEECCEEEEecCCCC------CCCCeEEECCCCEEecCEEEeeeccCCCC----
Confidence 4688999999997542 245799999999999986532 12457999999999999999999983210
Q ss_pred cCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCC-cc-----CHHHHHHHHHHhCCeEEEecccc
Q 011766 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG-GQ-----HVSEMAKAVELLGLRACLVQSTM 171 (478)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~-~~-----~~~~~~~~~~~~g~~~~~~~~~~ 171 (478)
... ........+.++++|||++++++ .. .........+.......+.....
T Consensus 68 --------------------~~~---~~~~~~~~~aa~~gGvTt~~~~p~~t~p~~~~~~~~~~~~~~~~~~~~~d~~~~ 124 (451)
T PRK06189 68 --------------------RTH---WEGFATGSAALAAGGCTTYFDMPLNSIPPTVTREALDAKAELARQKSAVDFALW 124 (451)
T ss_pred --------------------CCC---cccHHHHHHHHHhCCEEEEEECCCCCCCCCCcHHHHHHHHHHhCcCceEeEEEE
Confidence 000 01122234568899999999875 11 12222222222222211111111
Q ss_pred cCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEec---cccccCCHHHHHHHHHHHHHcC
Q 011766 172 DCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGI---RQIMNATDRLLLETRDMAREFK 248 (478)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~a~~~~ 248 (478)
. + . .. .....+..+...+...++.+... ......+...+.++++.+.+.+
T Consensus 125 ~-~--~--------~~----------------~~~~~l~~l~~~Gv~~~k~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 177 (451)
T PRK06189 125 G-G--L--------VP----------------GNLEHLRELAEAGVIGFKAFMSNSGTDEFRSSDDLTLYEGMKEIAALG 177 (451)
T ss_pred e-c--c--------cc----------------cCHHHHHHHHHcCCcEEEEEccccCCCCcCcCCHHHHHHHHHHHHhcC
Confidence 0 0 0 00 11112333333333334433221 1122345667888888888899
Q ss_pred CceeEeccCChhhhHHH--hhhcC-------CCCc-------hH-HHHhhhCCCCCCeeeeeeccCC-hhHHHHHHhcC-
Q 011766 249 TGIHMHVAEIPYENQVV--MDTRK-------VDHG-------TV-TFLDKIEFLQNNLLSAHTVWVN-HTEIGLLSRAG- 309 (478)
Q Consensus 249 ~~v~~H~~~~~~~~~~~--~~~~~-------~~~~-------~~-~~l~~~~~~~~~~~i~h~~~~~-~~~~~~~~~~~- 309 (478)
..+.+|+.......... ....+ ...+ .+ ..+......+.+..+.|.+... -+.++.+++.|
T Consensus 178 ~~~~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~P~~~E~~~v~~~l~la~~~g~~~hi~HiSt~~~~~~i~~~k~~g~ 257 (451)
T PRK06189 178 KILALHAESDALTRHLTTQARQQGKTDVRDYLESRPVVAELEAVQRALLYAQETGCPLHFVHISSGKAVALIAEAKKRGV 257 (451)
T ss_pred CeEEEECCChHHHHHHHHHHHhcCCCChhHccccCCHHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHCCC
Confidence 99999996544211110 00000 0000 01 1222223334555566655421 13344445555
Q ss_pred -CeEEECccchhhc--------------------cCCCcHHHHHHCCCcEEEcCCCCCCCCC----cCHHHH--------
Q 011766 310 -VKVSHCPASAMRM--------------------LGFAPIKEMLHADICVSLGTDGAPSNNR----MSIVDE-------- 356 (478)
Q Consensus 310 -~~~~~~p~~~~~~--------------------~~~~~~~~~~~~gv~v~~gsD~~~~~~~----~~~~~~-------- 356 (478)
+.+.+||...... ....++.+++++|+.++++||+.++... .++++.
T Consensus 258 ~vt~ev~ph~L~l~~~~~~~~~~~~~~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~p~~~~~K~~~~~~~~~~G~~g~e 337 (451)
T PRK06189 258 DVSVETCPHYLLFTEEDFERIGAVAKCAPPLRSRSQKEELWRGLLAGEIDMISSDHSPCPPELKEGDDFFLVWGGISGGQ 337 (451)
T ss_pred cEEEEeCHHHhhcCHhHhhCcCCceEEeCCCCChhhHHHHHHHHhCCCceEEECCCCCCCHHHcCcCCcccCCCCceeHH
Confidence 5567788643210 0113445788999999999999876432 122211
Q ss_pred HHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCc--------C
Q 011766 357 MYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPV--------H 428 (478)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~--------~ 428 (478)
.....+.... ..+.++|++++++++|.|||++||+ +++|+|++|++|||+|+|.+..+..+. .
T Consensus 338 ~~l~~~~~~~--------~~~~~l~~~~~~~~~t~npA~~lgl-~~~G~l~~G~~ADlvi~d~~~~~~~~~~~~~~~~~~ 408 (451)
T PRK06189 338 STLLVMLTEG--------YIERGIPLETIARLLATNPAKRFGL-PQKGRLEVGADADFVLVDLDETYTLTKEDLFYRHKQ 408 (451)
T ss_pred HHHHHHHHHH--------HhcCCCCHHHHHHHHhhhHHHHhCC-CCCCcccCCCcCCEEEEcCCCCEEECHHHhhhcCCC
Confidence 2222222211 0133599999999999999999999 457999999999999999973221111 2
Q ss_pred ChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHH
Q 011766 429 DRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQL 470 (478)
Q Consensus 429 d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~ 470 (478)
+|+..... ..+|.+||++|++||++|+++....|+++++
T Consensus 409 ~p~~g~~~---~g~v~~tiv~G~~v~~~g~~~~~~~G~~~~~ 447 (451)
T PRK06189 409 SPYEGRTF---PGRVVATYLRGQCVYQDGEVFPPPRGQLLRP 447 (451)
T ss_pred CCcCCcEE---EeEEEEEEECCEEEEECCEEccCCCCcEecC
Confidence 33332211 2579999999999999999887777887754
|
|
| >PRK13309 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-32 Score=262.25 Aligned_cols=340 Identities=17% Similarity=0.174 Sum_probs=203.4
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhh--h-----hhccCCCeEEeCCCCEEeecccccccccc
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADIL--Q-----QFSQMADQIIDLQSQILLPGFVNTHVHTS 90 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~--~-----~~~~~~~~viD~~G~~v~PGfID~H~H~~ 90 (478)
..+++|+|++|+++. .. +..++|.|+||||++|++..... . .+...++++||++|++|+|||||+|+|+.
T Consensus 67 ~~DlVI~Ng~ViD~~--~g-i~kaDI~IkdGrI~aIG~~~~p~~~~~v~~~~~~g~~tevIDa~G~iVtPG~ID~HvH~~ 143 (572)
T PRK13309 67 VLDLVITNVTIVDAR--LG-VIKADVGIRDGKIVGIGKSGNPSTMDGVTQGMVVGVSTDAISGEHLILTAAGIDTHIHLI 143 (572)
T ss_pred cCCEEEECeEEEcCC--CC-EEEEEEEEECCEEEEecCCCccccccccccccccCCCceEEECCCCEEEeCEEEeecccC
Confidence 578999999999542 23 35789999999999999743110 0 00112468999999999999999999982
Q ss_pred hhhhccccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc------------CH---HHHHH
Q 011766 91 QQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ------------HV---SEMAK 155 (478)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~------------~~---~~~~~ 155 (478)
. +. . ...++.+||||+++.+.. .. ..+.+
T Consensus 144 ~----------------------------P~--~------~~aAl~gGVTTvi~~G~gp~~~~n~~~~t~g~~~i~~~l~ 187 (572)
T PRK13309 144 S----------------------------PQ--Q------AYHALSNGVTTFFGGGIGPTDGTNGTTVTPGPWNIRQMLR 187 (572)
T ss_pred C----------------------------cc--h------HHHHHcCceEEEEecCCCCccCCCCCCCCCCHHHHHHHHH
Confidence 1 00 0 135799999999964311 11 12222
Q ss_pred HHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHH
Q 011766 156 AVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDR 235 (478)
Q Consensus 156 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (478)
.++...+.... . +.+ + . . ...+ +.+....+...++ .+..+..+++
T Consensus 188 ~a~~~pvn~g~----~--gkg----~----~-~---------------~~~~-l~el~~aGa~gfk----~~~d~g~t~~ 232 (572)
T PRK13309 188 SIEGLPVNVGI----L--GKG----N----S-Y---------------GRGP-LLEQAIAGVAGYK----VHEDWGATAA 232 (572)
T ss_pred HhccCCcCEEE----E--cCC----C----C-C---------------CHHH-HHHHHhcCcEEEE----ecCcCCcCHH
Confidence 22222222111 0 000 0 0 0 1111 2222233322222 2333455888
Q ss_pred HHHHHHHHHHHcCCceeEeccCCh--hhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCe--
Q 011766 236 LLLETRDMAREFKTGIHMHVAEIP--YENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVK-- 311 (478)
Q Consensus 236 ~l~~~~~~a~~~~~~v~~H~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~-- 311 (478)
.+.++++.++++++++.+|+.... ...+...... ..++++.++..+....+ .++.++.+...++-
T Consensus 233 ~L~~aLe~A~~~gv~VaiH~d~lnE~g~vE~~~aa~--~grpih~~H~~Gagggh---------apd~~~~~~~~~~~~~ 301 (572)
T PRK13309 233 ALRHALRVADEVDIQVAVHTDSLNECGYVEDTIDAF--EGRTIHTFHTEGAGGGH---------APDIIKVASQTNVLPS 301 (572)
T ss_pred HHHHHHHHHHhcCCEEEEeCCccccchhHHHHHHHh--CCCceeeeeccCcccCC---------chhHHHhcCCCCcccC
Confidence 999999999999999999964322 1122222111 11223333332222110 01111111111111
Q ss_pred -------------------EEECccc-------------hhhccCCCcHHHHHHCCCcEEEcCCCCCCC-CCcCHHHHHH
Q 011766 312 -------------------VSHCPAS-------------AMRMLGFAPIKEMLHADICVSLGTDGAPSN-NRMSIVDEMY 358 (478)
Q Consensus 312 -------------------~~~~p~~-------------~~~~~~~~~~~~~~~~gv~v~~gsD~~~~~-~~~~~~~~~~ 358 (478)
+.+|... ..+.....+++.+++.|+.++++||++... ...+++..++
T Consensus 302 st~pt~p~~~~~~~e~~~m~m~~h~l~~~~~~D~~~a~srig~e~~~a~~~l~daGa~~~~gSD~pv~gr~~~~p~~~iq 381 (572)
T PRK13309 302 STNPTLPYGVNSQAELFDMIMVCHNLNPNVPADVAFAESRVRPETIAAENVLHDMGVISMFSSDSQAMGRVGENWLRAIQ 381 (572)
T ss_pred CCCCCCCCcccchHhhhchhhhhccCCCCCCCChhHHHHhhCchhhcchhHHHhCCCEEEEcCCCCcccCCcccHHHHHH
Confidence 1111110 012244678899999999999999997532 2467788888
Q ss_pred HHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhcc
Q 011766 359 LASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCM 438 (478)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~ 438 (478)
.+......+..........+.+++.+||+++|.|||+++|+++++|+|++||.||||||+++.+.
T Consensus 382 ~Av~rk~~~g~l~~~~~~~~~~~v~~aL~~yT~n~A~a~g~e~~~GsLe~Gk~ADlvvld~d~f~--------------- 446 (572)
T PRK13309 382 TADAMKAARGKLPEDAAGNDNFRVLRYVAKITINPAITQGVSHVIGSVEVGKMADLVLWEPRFFG--------------- 446 (572)
T ss_pred HHHHHHhccCCCCccCCCcccccHHHHHHHHhHHHHHHcCcccCccccCCCCcCCEEEEchhhcC---------------
Confidence 77765432222111111245689999999999999999999999999999999999999987442
Q ss_pred CCCCeeEEEEccEEEEEC-Cee
Q 011766 439 RTENVVSVMCNGQWVMKN-KKI 459 (478)
Q Consensus 439 ~~~~v~~v~v~G~~v~~~-g~~ 459 (478)
.++..||++|+++|.. |..
T Consensus 447 --~~~~~vi~~G~iv~~~~gd~ 466 (572)
T PRK13309 447 --AKPKMVIKGGMINWAAMGDP 466 (572)
T ss_pred --CCccEEEECCEEEEecCCCc
Confidence 4678999999999988 554
|
|
| >cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=265.93 Aligned_cols=378 Identities=18% Similarity=0.174 Sum_probs=214.7
Q ss_pred eeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccC
Q 011766 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (478)
Q Consensus 20 ~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~ 99 (478)
|++|+|++|++++ . ..+++|+|+||||++|++.... ..+.++||++|++|+|||||+|+|+....
T Consensus 1 dl~i~~~~v~~~~---~-~~~~~v~I~~g~I~~i~~~~~~-----~~~~~~iDa~G~~v~PG~ID~H~H~~~~~------ 65 (447)
T cd01315 1 DLVIKNGRVVTPD---G-VREADIAVKGGKIAAIGPDIAN-----TEAEEVIDAGGLVVMPGLIDTHVHINEPG------ 65 (447)
T ss_pred CEEEECCEEECCC---C-ceEeEEEEECCEEEEEeCCCCC-----CCCCeEEECCCCEEeccEeeceeccCCCC------
Confidence 5799999999652 2 3457999999999999875321 13568999999999999999999983210
Q ss_pred CCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc-----CHHHHHH-HHHHhCCeEEEecccccC
Q 011766 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-----HVSEMAK-AVELLGLRACLVQSTMDC 173 (478)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~-----~~~~~~~-~~~~~g~~~~~~~~~~~~ 173 (478)
.... .......+.++++||||+++++.. ......+ ..+.......+......
T Consensus 66 ------------------~~~~---e~~~~~s~aal~gGvTtv~d~p~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~- 123 (447)
T cd01315 66 ------------------RTEW---EGFETGTKAAAAGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVDVGFWG- 123 (447)
T ss_pred ------------------cccc---ccHHHHHHHHHhCCceEEEeCCCCCCCCcCCHHHHHHHHHHhccCceeeEEEEE-
Confidence 0000 111233456799999999998621 1112222 22222111111111100
Q ss_pred CCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEecccc---ccCCHHHHHHHHHHHHHcCCc
Q 011766 174 GEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQI---MNATDRLLLETRDMAREFKTG 250 (478)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~a~~~~~~ 250 (478)
+ .. . ...+.++++.+.+...++.+...... ...+.+.+.++++.+++.|++
T Consensus 124 ~--~~--------~----------------~~~~ei~~l~~~G~~giKv~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~ 177 (447)
T cd01315 124 G--LV--------P----------------GNLDQLRPLDEAGVVGFKCFLCPSGVDEFPAVDDEQLEEAMKELAKTGSV 177 (447)
T ss_pred e--ec--------C----------------CCHHHHHHHHHcCCcEEEEEecccCCCCcccCCHHHHHHHHHHHHhcCCe
Confidence 0 00 0 01111223333344456554433221 235778899999999999999
Q ss_pred eeEeccCChhhhHHHhhhc---------CCCC--------chHHHHhhhCCCCCCeeeeeeccC-ChhHHHHHHhcC--C
Q 011766 251 IHMHVAEIPYENQVVMDTR---------KVDH--------GTVTFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAG--V 310 (478)
Q Consensus 251 v~~H~~~~~~~~~~~~~~~---------~~~~--------~~~~~l~~~~~~~~~~~i~h~~~~-~~~~~~~~~~~~--~ 310 (478)
+.+|+.............. .... .....+......+.+..+.|.+.. +-+.++.++..| +
T Consensus 178 v~vH~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~g~~ihi~h~s~~~~~~~i~~~~~~g~~i 257 (447)
T cd01315 178 LAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKETGCRLHIVHLSSAEAVPLIREARAEGVDV 257 (447)
T ss_pred EEEEcCCHHHHHHHHHhHhhcCCCChHHhhccCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCce
Confidence 9999976432211110000 0000 011222223333455666775532 123334444555 3
Q ss_pred eEEECccchhhc-----------cCCC---------cHHHHHHCCCcEEEcCCCCCCCCC------cCHHH--------H
Q 011766 311 KVSHCPASAMRM-----------LGFA---------PIKEMLHADICVSLGTDGAPSNNR------MSIVD--------E 356 (478)
Q Consensus 311 ~~~~~p~~~~~~-----------~~~~---------~~~~~~~~gv~v~~gsD~~~~~~~------~~~~~--------~ 356 (478)
.+.+||...... ...+ .+.++++.|...+++||+.++... .+++. +
T Consensus 258 ~~e~~~h~l~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~g~i~~i~SDh~p~~~~~k~~~~~~~~~~~~g~~g~~ 337 (447)
T cd01315 258 TVETCPHYLTFTAEDVPDGGTEFKCAPPIRDAANQEQLWEALENGDIDMVVSDHSPCTPELKLLGKGDFFKAWGGISGLQ 337 (447)
T ss_pred EEEeccccEEEcHHHccCCCCceEECCCCCChHHHHHHHHHHhCCceeEEeCCCCCCCHHHhccCCCChhhCCCCeeEHH
Confidence 455677532210 0112 233567889999999999875310 11111 0
Q ss_pred HHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCc-----CChh
Q 011766 357 MYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPV-----HDRI 431 (478)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~-----~d~~ 431 (478)
..+..+... .....++|++++++++|.|||+++|+++++|+|++|++|||||+|.+..+.... .++.
T Consensus 338 ~~~~~~~~~--------~~~~~~~~~~~~~~~~t~~pa~~~g~~~~~G~l~~g~~Ad~~v~d~~~~~~~~~~~~~~~~~~ 409 (447)
T cd01315 338 LGLPVMLTE--------AVNKRGLSLEDIARLMCENPAKLFGLSHQKGRIAVGYDADFVVWDPEEEFTVDAEDLYYKNKI 409 (447)
T ss_pred HhHHHHHHH--------HHHcCCCCHHHHHHHHhHHHHHHhCCCCCCccccCCCCCCEEEEcCCCCEEEcHHHccccCCC
Confidence 101111100 001236999999999999999999997678999999999999999874221111 1111
Q ss_pred hhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHH
Q 011766 432 TSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLF 468 (478)
Q Consensus 432 ~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~ 468 (478)
+-+.......+|.+||++|++||++|+++..+.|+++
T Consensus 410 ~~~~g~~~~g~v~~ti~~G~~v~~~~~~~~~~~G~~~ 446 (447)
T cd01315 410 SPYVGRTLKGRVHATILRGTVVYQDGEVVGEPLGQLL 446 (447)
T ss_pred CCccCeEEeeeEEEEEECCEEEEECCeEccCCCceEe
Confidence 1111112235799999999999999999865566654
|
But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid. |
| >PLN02795 allantoinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=265.38 Aligned_cols=383 Identities=16% Similarity=0.154 Sum_probs=222.9
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~ 96 (478)
++.+++|+|++|++++ .. ..++|+|+||+|++|++....+. ...+.++||++|++|+|||||+|+|+....
T Consensus 42 ~~~~~vi~~~~vv~~~---~~-~~~~v~i~dG~I~~I~~~~~~~~--~~~~~~~ida~G~~v~PG~ID~H~H~~~~~--- 112 (505)
T PLN02795 42 PWPHFVLYSKRVVTPA---GV-IPGAVEVEGGRIVSVTKEEEAPK--SQKKPHVLDYGNAVVMPGLIDVHVHLNEPG--- 112 (505)
T ss_pred cccceEEECCEEEECC---Ce-EEEEEEEECCEEEEecCcccccc--ccCCCEEEECCCCEEecCEEecccCcCCCC---
Confidence 3479999999999743 22 35799999999999987432110 012458999999999999999999983210
Q ss_pred ccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCc-cCH----HHHHHHHHHhCCeEEEecccc
Q 011766 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-QHV----SEMAKAVELLGLRACLVQSTM 171 (478)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~-~~~----~~~~~~~~~~g~~~~~~~~~~ 171 (478)
.. .+.......+.++.+|||+++++.. ..+ ....+..... ......+
T Consensus 113 ---------------------~~---~~e~~~~~~~aa~~gGvTtv~dmp~~~~P~~~~~~~~~~~~~~----~~~~~~v 164 (505)
T PLN02795 113 ---------------------RT---EWEGFPTGTKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEA----AKGKLYV 164 (505)
T ss_pred ---------------------cc---chhHHHHHHHHHHcCCcEEEECCCCCCCCCCChHHHHHHHHHH----hccCcee
Confidence 00 0122334556688899999999862 211 1222111111 1111111
Q ss_pred cCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccc---cCCHHHHHHHHHHHHHcC
Q 011766 172 DCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIM---NATDRLLLETRDMAREFK 248 (478)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~a~~~~ 248 (478)
+.+ +.... ... .. ...+.+.++...+...++.+.+++..+ ..+.+.+.++++.++++|
T Consensus 165 d~~--~~~~~----~~~-~~------------~~~~~l~~~~~~G~~g~k~f~~~~~~~~~~~~~~~~l~~~~~~a~~~g 225 (505)
T PLN02795 165 DVG--FWGGL----VPE-NA------------HNASVLEELLDAGALGLKSFMCPSGINDFPMTTATHIKAALPVLAKYG 225 (505)
T ss_pred eee--ceecc----cCc-ch------------hHHHHHHHHHHCCCcEEEEEecccCCCCcccCCHHHHHHHHHHHHHhC
Confidence 111 00000 000 00 122333333333443366655554433 567789999999999999
Q ss_pred CceeEeccCChhhh-HHHhh-------hcCCC-Cc-----hH-HHHhhhCCC-------CCCeeeeeeccC--ChhHHHH
Q 011766 249 TGIHMHVAEIPYEN-QVVMD-------TRKVD-HG-----TV-TFLDKIEFL-------QNNLLSAHTVWV--NHTEIGL 304 (478)
Q Consensus 249 ~~v~~H~~~~~~~~-~~~~~-------~~~~~-~~-----~~-~~l~~~~~~-------~~~~~i~h~~~~--~~~~~~~ 304 (478)
+++++|+....-.. ..... .+... .. .+ ..+...... +.+..+.|.+.. +-+.++.
T Consensus 226 ~~v~iH~E~~~l~~~~~~~~~~~~~~~~~~~~rP~~aE~~ai~~~~~la~~~~~~~~~~g~~lhi~HiSt~~~~~e~i~~ 305 (505)
T PLN02795 226 RPLLVHAEVVSPVESDSRLDADPRSYSTYLKSRPPSWEQEAIRQLLEVAKDTRPGGVAEGAHVHIVHLSDAESSLELIKE 305 (505)
T ss_pred CEEEEecCChhHhhhhhhhhcCCcChhHhcccCCHHHHHHHHHHHHHHHHHhhhcccCCCCCEEEEECCChHHHHHHHHH
Confidence 99999997754211 00000 00000 00 11 112222222 556677776653 1234455
Q ss_pred HHhcC--CeEEECccchhhc-----------cCCCc---------HHHHHHCCCcEEEcCCCCCCCCCc------CHHH-
Q 011766 305 LSRAG--VKVSHCPASAMRM-----------LGFAP---------IKEMLHADICVSLGTDGAPSNNRM------SIVD- 355 (478)
Q Consensus 305 ~~~~~--~~~~~~p~~~~~~-----------~~~~~---------~~~~~~~gv~v~~gsD~~~~~~~~------~~~~- 355 (478)
+++.| +.+.+||.+.... .-.+| +.+.+..|...+++|||.|+.... +++.
T Consensus 306 ak~~G~~Vt~Ev~ph~L~l~~~~~~~~~~~~k~~PPLR~~~d~~aL~~al~~G~Id~i~sDHap~~~~~K~~~~~~~~~a 385 (505)
T PLN02795 306 AKAKGDSVTVETCPHYLAFSAEEIPDGDTRYKCAPPIRDAANRELLWKALLDGDIDMLSSDHSPSPPDLKLLEEGNFLRA 385 (505)
T ss_pred HHHCCCcEEEEeChhhhcccHHHccCCCCceEEcCCCCChHHHHHHHHHHhCCCceEEecCCCCCChHHhccCcCCHhhC
Confidence 56666 6677888743210 01123 336778899999999998874211 1111
Q ss_pred -------HHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcC
Q 011766 356 -------EMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVH 428 (478)
Q Consensus 356 -------~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~ 428 (478)
+.....+... ..+.++|++++++++|.|||+++|+ +++|.|++|++|||||+|.+..+....+
T Consensus 386 ~~G~~gle~~l~~~~~~---------~~~~~l~l~~~v~~~s~~pA~~~gl-~~~G~l~~G~~ADlvi~d~~~~~~v~~~ 455 (505)
T PLN02795 386 WGGISSLQFVLPATWTA---------GRAYGLTLEQLARWWSERPAKLAGL-DSKGAIAPGKDADIVVWDPEAEFVLDES 455 (505)
T ss_pred CCCceeHHHHHHHHHHH---------HHHcCCCHHHHHHHHHHHHHHHhCC-CCCCccCCCCccCEEEEcCCcceEECcc
Confidence 0111111111 0234699999999999999999999 5679999999999999998743221111
Q ss_pred ----------ChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHH
Q 011766 429 ----------DRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLF 468 (478)
Q Consensus 429 ----------d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~ 468 (478)
.|+... .-..+|.+||++|++||++|+++....|+++
T Consensus 456 ~~~~s~~~~~sp~~G~---~l~g~v~~tiv~G~~v~~~g~~~~~~~G~~~ 502 (505)
T PLN02795 456 YPIYHKHKSLSPYLGT---KLSGKVIATFVRGNLVFLEGKHAKQACGSPI 502 (505)
T ss_pred hhhhhcCCCcCCCCCe---EEEeEEEEEEECCEEEEECCeEcCCCCCeEe
Confidence 122211 1135799999999999999998744445543
|
|
| >PRK13404 dihydropyrimidinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=267.76 Aligned_cols=382 Identities=16% Similarity=0.170 Sum_probs=225.9
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccc
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~ 97 (478)
+++++|+|++|+++.+ . .+++|+|+||+|++|++.. + .+.++||++|++|+|||||+|+|+.+....
T Consensus 3 ~~d~~i~~~~v~~~~~---~-~~~~i~I~dg~I~~i~~~~------~-~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~-- 69 (477)
T PRK13404 3 AFDLVIRGGTVVTATD---T-FQADIGIRGGRIAALGEGL------G-PGAREIDATGRLVLPGGVDSHCHIDQPSGD-- 69 (477)
T ss_pred CCcEEEECCEEEcCCC---c-eEEEEEEECCEEEEecCCC------C-CCCeEEECCCCEEecCEEEeEEcCCccccC--
Confidence 4678999999996432 2 3579999999999998642 1 255899999999999999999999431000
Q ss_pred cCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC----HHHHHHHHH-HhCCeEEEeccccc
Q 011766 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH----VSEMAKAVE-LLGLRACLVQSTMD 172 (478)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~----~~~~~~~~~-~~g~~~~~~~~~~~ 172 (478)
..... .......+.++.+|||++++++... ..+..+... ...-..........
T Consensus 70 -------------------~~~~~---e~~~~~s~aa~~gGvTtv~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~ 127 (477)
T PRK13404 70 -------------------GIMMA---DDFYTGTVSAAFGGTTTVIPFAAQHRGQSLREAVEDYHRRAAGKAVIDYAFHL 127 (477)
T ss_pred -------------------Ccccc---chHHHHHHHHHcCCccEEEEccCCCCCCCHHHHHHHHHHHhccCcEEEEEEEE
Confidence 00000 1223344567899999999976322 222222211 11111111110000
Q ss_pred CCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCcee
Q 011766 173 CGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIH 252 (478)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~ 252 (478)
+. ...... ...+.+..+...+...++++..... ...+++.+.++++.++++|.++.
T Consensus 128 ---~~--------~~~~~~------------~~~~~v~~l~~~G~~~iKi~~~~~~-~~~~~~~l~~~~~~a~~~g~~V~ 183 (477)
T PRK13404 128 ---IV--------ADPTEE------------VLTEELPALIAQGYTSFKVFMTYDD-LKLDDRQILDVLAVARRHGAMVM 183 (477)
T ss_pred ---Ee--------cCCChh------------hHHHHHHHHHHcCCCEEEEEecCCC-CCCCHHHHHHHHHHHHhcCCEEE
Confidence 00 000000 2223344444555566776543222 34677889999999999999999
Q ss_pred EeccCChhhhHHHhh--hcC-------CCCc--------hHHHHhhhCCCCCCeeeeeeccCC-hhHHHHHHhcC--CeE
Q 011766 253 MHVAEIPYENQVVMD--TRK-------VDHG--------TVTFLDKIEFLQNNLLSAHTVWVN-HTEIGLLSRAG--VKV 312 (478)
Q Consensus 253 ~H~~~~~~~~~~~~~--~~~-------~~~~--------~~~~l~~~~~~~~~~~i~h~~~~~-~~~~~~~~~~~--~~~ 312 (478)
+|+.+.......... ..+ ...+ ....+......+.+..+.|.+.-. -+.+..+++.| +.+
T Consensus 184 ~Hae~~~~i~~~~~~~~~~G~~~~~~~~~~rp~~~E~~~v~~~~~la~~~g~~~hi~Hvs~~~~~~~i~~~k~~g~~vt~ 263 (477)
T PRK13404 184 VHAENHDMIAWLTKRLLAAGLTAPKYHAISRPMLAEREATHRAIALAELVDVPILIVHVSGREAAEQIRRARGRGLKIFA 263 (477)
T ss_pred EEeCCHHHHHHHHHHHHHCCCcchhhccccCCHHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 999764432100000 000 0000 011222233445566677766421 24455556666 445
Q ss_pred EECccchhhc-----c---------CC---------CcHHHHHHCCCcEEEcCCCCCCCCC-----------cCHH----
Q 011766 313 SHCPASAMRM-----L---------GF---------APIKEMLHADICVSLGTDGAPSNNR-----------MSIV---- 354 (478)
Q Consensus 313 ~~~p~~~~~~-----~---------~~---------~~~~~~~~~gv~v~~gsD~~~~~~~-----------~~~~---- 354 (478)
.+||...... . -. ..+.+++..|...+++|||.|+... .+++
T Consensus 264 e~~ph~L~l~~~~~~~~~~~g~~~k~~Pplr~~~d~~aL~~~l~~G~id~i~sDHap~~~~eK~~~~~~~~~~~~~~~~~ 343 (477)
T PRK13404 264 ETCPQYLFLTAEDLDRPGMEGAKYICSPPPRDKANQEAIWNGLADGTFEVFSSDHAPFRFDDTDGKLAAGANPSFKAIAN 343 (477)
T ss_pred EEChhhhccCHHHhcCccccCCceEECCCCCChHHHHHHHHHHhCCCceEEecCCCCCCcccchhhhhccCCCCHhhCCC
Confidence 6888753211 0 01 2334677889999999999887411 1122
Q ss_pred ----HHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCc---
Q 011766 355 ----DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPV--- 427 (478)
Q Consensus 355 ----~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~--- 427 (478)
-++....+..... ...++|++++++++|.|||+++|+.+++|+|++|++|||+++|.+..+..+.
T Consensus 344 G~~gie~~l~~ll~~~v--------~~~~ls~~~~~~~~t~~pA~~lgl~~~~G~i~~G~~ADlvivd~~~~~~v~~~~~ 415 (477)
T PRK13404 344 GIPGIETRLPLLFSEGV--------VKGRISLNRFVALTSTNPAKLYGLYPRKGAIAIGADADIAIWDPDREVTITNADL 415 (477)
T ss_pred CcccHHHHHHHHHHHHH--------HcCCCCHHHHHHHHHHHHHHHhCCCCCCceecCCCcCCEEEEcCCccEEEchHHh
Confidence 1222222222110 1235999999999999999999997678999999999999999985433322
Q ss_pred -----CChhhhhhhccCCCCeeEEEEccEEEEECCeeeccc-HHHHHH
Q 011766 428 -----HDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLM-RGRLFQ 469 (478)
Q Consensus 428 -----~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~-~~~~~~ 469 (478)
.+|+.... -..++..||++|++||++|+++..+ .|++++
T Consensus 416 ~~~~~~sp~~g~~---~~g~v~~tiv~G~vv~~~g~~~~~~~~G~~~~ 460 (477)
T PRK13404 416 HHAADYTPYEGMR---VTGWPVTVLSRGRVVVEDGELVAERGSGQFLA 460 (477)
T ss_pred cccCCCCcccceE---EeeeEEEEEECCEEEEECCEEecCCCceeEec
Confidence 12333221 1356889999999999999998544 577765
|
|
| >PRK07575 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=265.84 Aligned_cols=371 Identities=16% Similarity=0.244 Sum_probs=212.5
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccc
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~ 97 (478)
+++++|+|++|+++++ ....++|+|+||+|++|++.... ....++||++|++|+|||||+|+|+....
T Consensus 2 ~~~~~i~~~~i~~~~~---~~~~~~I~I~dg~I~~ig~~~~~-----~~~~~vid~~g~~v~PG~ID~H~H~~~~~---- 69 (438)
T PRK07575 2 MMSLLIRNARILLPSG---ELLLGDVLVEDGKIVAIAPEISA-----TAVDTVIDAEGLTLLPGVIDPQVHFREPG---- 69 (438)
T ss_pred cceEEEECCEEECCCC---CEEeeeEEEECCEEEEecCCCCC-----CCCCeEEECCCCEEcccEEEeeeccCCCC----
Confidence 4678999999997532 23567999999999999874321 11358999999999999999999973210
Q ss_pred cCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC-----HHHHHHHHHHhCCeEEEeccccc
Q 011766 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-----VSEMAKAVELLGLRACLVQSTMD 172 (478)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~ 172 (478)
....+ ......+.++++|||++++++... ............-...+......
T Consensus 70 --------------------~~~~e---~~~~~~~aa~~gGvTt~~dmp~~~p~~~~~~~~~~~~~~a~~~~~v~~~~~~ 126 (438)
T PRK07575 70 --------------------LEHKE---DLFTASRACAKGGVTSFLEMPNTKPLTTTQAALDDKLARAAEKCVVNYGFFI 126 (438)
T ss_pred --------------------CcCcc---hHHHHHHHHHhCCEEEEEECCCCCCCCCcHHHHHHHHHHhccCcEEEEEEEc
Confidence 10111 222233467999999999986421 22222222222111111111110
Q ss_pred CCC--------------CCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEE--------------E
Q 011766 173 CGE--------------GLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIW--------------F 224 (478)
Q Consensus 173 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~ 224 (478)
... ++. .+........ . .+ ........+... ...+... .
T Consensus 127 ~~~~~~l~~l~~~~~~~g~~-~f~~~~~~~~-~------~~-~~~~~~~~~~~~----~~~v~~h~e~~~l~~~~~~~~~ 193 (438)
T PRK07575 127 GATPDNLPELLTANPTCGIK-IFMGSSHGPL-L------VD-EEAALERIFAEG----TRLIAVHAEDQARIRARRAEFA 193 (438)
T ss_pred cccccCHHHHHHhhCCeEEE-EEEeeCCCCc-c------cC-cHHHHHHHHHhC----CCEEEEeCcChHHHHhhhHhhc
Confidence 000 000 0000000000 0 00 000001111110 0111000 0
Q ss_pred ecccc-----ccCCH---HHHHHHHHHHHHcCCceeE-eccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeec
Q 011766 225 GIRQI-----MNATD---RLLLETRDMAREFKTGIHM-HVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTV 295 (478)
Q Consensus 225 ~~~~~-----~~~~~---~~l~~~~~~a~~~~~~v~~-H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~ 295 (478)
+.... ..... +.+.+++++|++.|+++++ |+. .....+.+....+ ......+..-| .
T Consensus 194 g~~~~~~~~~~~p~~aE~~av~~~~~la~~~g~~lhi~HiS-t~~~v~~i~~~k~------------~~vt~ev~phh-L 259 (438)
T PRK07575 194 GISDPADHSQIQDEEAALLATRLALKLSKKYQRRLHILHLS-TAIEAELLRQDKP------------SWVTAEVTPQH-L 259 (438)
T ss_pred cCcCcccccccCcHHHHHHHHHHHHHHHHHHCCCEEEEECC-CHHHHHHHHHhcC------------CCEEEEEchhh-h
Confidence 00000 11122 4577888999999999998 887 3433332222110 11122233334 6
Q ss_pred cCChhHHHHHHhcCCeEEECccchhhc-cCCCcHHHHHHCCCcEEEcCCCCCCCC----------CcCH-HHHHHHHHHH
Q 011766 296 WVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNN----------RMSI-VDEMYLASLI 363 (478)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~gv~v~~gsD~~~~~~----------~~~~-~~~~~~~~~~ 363 (478)
+++++++.. .+....++|. ++. .+..++.+++++|+.++++||+.|+.. ...+ ..++....+.
T Consensus 260 ~l~~~~~~~---~~~~~k~~PP--LR~~~d~~~L~~~l~~G~id~i~sDh~p~~~~~k~~~~~~~~~G~~g~e~~l~~l~ 334 (438)
T PRK07575 260 LLNTDAYER---IGTLAQMNPP--LRSPEDNEALWQALRDGVIDFIATDHAPHTLEEKAQPYPNSPSGMPGVETSLPLML 334 (438)
T ss_pred eeCHHHHhC---CCceEEEeCC--CCCHHHHHHHHHHHhCCCCCEEecCCCCCCHHHccCCcccCCCCcccHHHHHHHHH
Confidence 778777652 4666777887 333 456778889999999999999988742 1111 3344444443
Q ss_pred hcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcC--------Chhhhhh
Q 011766 364 NKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVH--------DRITSLV 435 (478)
Q Consensus 364 ~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~--------d~~~~~~ 435 (478)
... .+.++|++++++++|.|||++||+ +++|+|++|++|||||+|.+..+..+.+ +|+....
T Consensus 335 ~~~---------~~~~lsl~~~~~~~s~npAk~lgl-~~~G~L~~G~~ADlvi~D~~~~~~v~~~~~~s~~~~sp~~g~~ 404 (438)
T PRK07575 335 TAA---------MRGKCTVAQVVRWMSTAVARAYGI-PNKGRIAPGYDADLVLVDLNTYRPVRREELLTKCGWSPFEGWN 404 (438)
T ss_pred HHH---------hcCCCCHHHHHHHHhhhHHHHcCC-CCCCccCCCCcCCEEEEcCCCCEEEchHHccccCCCCCCCCCE
Confidence 321 123599999999999999999999 4469999999999999999854433322 2333222
Q ss_pred hccCCCCeeEEEEccEEEEECCeeecccHHHHH
Q 011766 436 YCMRTENVVSVMCNGQWVMKNKKILLLMRGRLF 468 (478)
Q Consensus 436 ~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~ 468 (478)
+ ..++..||++|++||++|+++.-..|+.+
T Consensus 405 ~---~G~v~~tiv~G~~v~~~g~~~~~~~G~~~ 434 (438)
T PRK07575 405 L---TGWPVTTIVGGQIVFDRGQVNTEVRGQAL 434 (438)
T ss_pred E---eeEEEEEEECCEEEEECCEEccCCCceEe
Confidence 2 24689999999999999998765455544
|
|
| >PRK15446 phosphonate metabolism protein PhnM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-31 Score=253.46 Aligned_cols=352 Identities=18% Similarity=0.166 Sum_probs=199.0
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccc
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~ 97 (478)
+++++|+|++|++.++ .. +++|+|+||||++|++... ...++||++|++|+|||||+|+|....
T Consensus 1 ~~~~~i~~~~v~~~~~---~~-~~~i~i~~g~I~~i~~~~~-------~~~~~iDa~g~~v~PG~ID~H~h~~~~----- 64 (383)
T PRK15446 1 MMEMILSNARLVLPDE---VV-DGSLLIEDGRIAAIDPGAS-------ALPGAIDAEGDYLLPGLVDLHTDNLEK----- 64 (383)
T ss_pred CccEEEECcEEEcCCC---ce-eeeEEEECCEEEEecCCCC-------CCCceEeCCCCEEEeCeEEcccCCccc-----
Confidence 3679999999997542 33 6899999999999997432 134789999999999999999965310
Q ss_pred cCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCC-cc--C-----HH----HHHHHHH--HhCCe
Q 011766 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG-GQ--H-----VS----EMAKAVE--LLGLR 163 (478)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~-~~--~-----~~----~~~~~~~--~~g~~ 163 (478)
.+..|.. ..++.+ .......++++.+||||+.|+. .. . .. .+..... ...-+
T Consensus 65 ----~~~p~~~-------~~~~~~---~~~~~~~~~a~~gG~Tt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (383)
T PRK15446 65 ----HLAPRPG-------VDWPAD---AALAAHDAQLAAAGITTVFDALSVGDEEDGGLRSRDLARKLIDAIEEARARGL 130 (383)
T ss_pred ----ccCCCCC-------CccchH---HHHHHHHHHHHhCCccEeeeeeEeccCCCCCcccHHHHHHHHHHHHHhhhcCc
Confidence 0011100 001111 2233455789999999999952 11 1 12 1112222 11111
Q ss_pred EEEecccccCCCCCCCcccccCCcccCCCCCCcccc-ccch-------hHHHHHHHhcCCCCCCeE-----EEE-ecccc
Q 011766 164 ACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFN-FVSS-------SQKELYAKHHHAADGRIR-----IWF-GIRQI 229 (478)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~-----~~~-~~~~~ 229 (478)
.++.+.+...-....+.... ....... .....|. |... .....++.+.....+.+. ... .....
T Consensus 131 ~~vD~~~h~~~~~~~~~~~~-~l~~~~~-~g~~~~k~fm~~~p~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~~~~~ 208 (383)
T PRK15446 131 LRADHRLHLRCELTNPDALE-LFEALLA-HPRVDLVSLMDHTPGQRQFRDLEKYREYYAGKYGLSDEEFDAFVEERIALS 208 (383)
T ss_pred hhccceeEEEEEecCcchHH-HHHHHhc-CCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhH
Confidence 11111100000000000000 0000000 0000000 0000 000001111100000000 000 00112
Q ss_pred ccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcC
Q 011766 230 MNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAG 309 (478)
Q Consensus 230 ~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~ 309 (478)
...+.+.++++++.|+++|+++..|..+....... ....+.. .+.| ..+.+.++.+++.|
T Consensus 209 ~~~~~e~i~~~v~~A~~~g~~v~sH~~~~~~~i~~--------------a~~~Gv~----~~e~--~~~~e~~~~~~~~g 268 (383)
T PRK15446 209 ARYAPPNRRAIAALARARGIPLASHDDDTPEHVAE--------------AHALGVA----IAEF--PTTLEAARAARALG 268 (383)
T ss_pred hhcCHHHHHHHHHHHHHCCCceeecCCCCHHHHHH--------------HHHcCCc----eeeC--CCcHHHHHHHHHCC
Confidence 23467889999999999999999999644332111 1111211 1223 34577788888889
Q ss_pred CeEEECccchhhc---cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHH
Q 011766 310 VKVSHCPASAMRM---LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 386 (478)
Q Consensus 310 ~~~~~~p~~~~~~---~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al 386 (478)
+.+..++...++. .+..+++++++.|++++++||+.+. +++..+.... ...++|+++++
T Consensus 269 ~~v~~~~p~~~r~~~~~~~~~~~~~~~~Gv~~~lgSD~~p~----~~~~~~~~~~--------------~~~gls~~~al 330 (383)
T PRK15446 269 MSVLMGAPNVVRGGSHSGNVSALDLAAAGLLDILSSDYYPA----SLLDAAFRLA--------------DDGGLDLPQAV 330 (383)
T ss_pred CEEEeCCcccccCCcccchHhHHHHHHCCCcEEEEcCCChh----hHHHHHHHHH--------------HhcCCCHHHHH
Confidence 9888776543332 3456788899999999999998543 2333222111 12369999999
Q ss_pred HHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECC
Q 011766 387 RMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNK 457 (478)
Q Consensus 387 ~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g 457 (478)
+++|.|||+++|++++ |+|++|++|||+|+|.++. ...+..||++|++||+.+
T Consensus 331 ~~~T~npA~~lgl~~~-G~I~~G~~ADlvv~d~~~~-----------------~~~v~~v~~~G~~v~~~~ 383 (383)
T PRK15446 331 ALVTANPARAAGLDDR-GEIAPGKRADLVRVRRAGG-----------------LPVVRAVWRGGRRVFLAG 383 (383)
T ss_pred HHHhHHHHHHcCCCCC-cCcCCCCcCCEEEEcCCCC-----------------CcchheEEECCEEEEeCC
Confidence 9999999999999655 9999999999999999710 147889999999998753
|
|
| >PRK09357 pyrC dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=261.49 Aligned_cols=362 Identities=20% Similarity=0.215 Sum_probs=215.1
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcccc
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~ 98 (478)
|+++|+|++|++++ ..+.+++|+|+||+|++|++... ..+.++||++|++|+|||||+|+|+...
T Consensus 1 ~~~~i~~~~v~~~~---~~~~~~~I~I~dg~I~~i~~~~~------~~~~~~iD~~g~~v~PG~ID~H~H~~~~------ 65 (423)
T PRK09357 1 MMILIKNGRVIDPK---GLDEVADVLIDDGKIAAIGENIE------AEGAEVIDATGLVVAPGLVDLHVHLREP------ 65 (423)
T ss_pred CcEEEEeEEEECCC---CCcceeeEEEECCEEEEeeCCCC------CCCCeEEECCCCEEeCCEEecccccCCC------
Confidence 35899999999643 34567899999999999986421 1245899999999999999999997321
Q ss_pred CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC--------HHHHHHHHHHhCCeEEEeccc
Q 011766 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH--------VSEMAKAVELLGLRACLVQST 170 (478)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~ 170 (478)
.....+ ......+.++++|||++.+++... .....+.....+...+.....
T Consensus 66 -----------------~~~~~e----~~~~~~~~a~~~GvTt~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (423)
T PRK09357 66 -----------------GQEDKE----TIETGSRAAAAGGFTTVVAMPNTKPVIDTPEVVEYVLDRAKEAGLVDVLPVGA 124 (423)
T ss_pred -----------------Cccccc----cHHHHHHHHHhCCCeEEEecCCCCCCCCcHHHHHHHHHHhccCCcccEEEEEE
Confidence 001111 112233446899999999976321 122333334445443333322
Q ss_pred ccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCc
Q 011766 171 MDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTG 250 (478)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 250 (478)
+..+ .. ..... +...+.+ . + +. .+..+..+..+++.+.++++.++++|.+
T Consensus 125 ~~~~--~~--------~~~~~------------~~~~l~~----~--g-v~-~~~~~~~~~~~~~~l~~~~~~a~~~g~~ 174 (423)
T PRK09357 125 ITKG--LA--------GEELT------------EFGALKE----A--G-VV-AFSDDGIPVQDARLMRRALEYAKALDLL 174 (423)
T ss_pred EEeC--CC--------CccHH------------HHHHHHh----C--C-cE-EEECCCcccCCHHHHHHHHHHHHhcCCE
Confidence 2211 00 00111 2222221 1 1 22 2445566677889999999999999999
Q ss_pred eeEeccCChhhhHHHh------hhcCCCC-ch------H-HHHhhhCCCCCCeeeeeeccCChhH-HHHHHhcC--CeEE
Q 011766 251 IHMHVAEIPYENQVVM------DTRKVDH-GT------V-TFLDKIEFLQNNLLSAHTVWVNHTE-IGLLSRAG--VKVS 313 (478)
Q Consensus 251 v~~H~~~~~~~~~~~~------~~~~~~~-~~------~-~~l~~~~~~~~~~~i~h~~~~~~~~-~~~~~~~~--~~~~ 313 (478)
+++|+.+......... ....... .. + ..+......+.+..+.|.......+ ++.+++.| +.+.
T Consensus 175 v~iH~ee~~~~~~~~~~~g~~~~~~~~~~~p~~~E~~~i~~~~~la~~~g~~~hi~H~s~~~~~~~i~~a~~~g~~v~~e 254 (423)
T PRK09357 175 IAQHCEDPSLTEGGVMNEGEVSARLGLPGIPAVAEEVMIARDVLLAEATGARVHICHVSTAGSVELIRWAKALGIKVTAE 254 (423)
T ss_pred EEEeCCCHHHhhcccccCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHHHHHHHHHHHcCCCEEEE
Confidence 9999987544321110 0011100 00 1 1222223334566777777644333 34444455 4556
Q ss_pred ECccchhh-----------c---------cCCCcHHHHHHCCCcEEEcCCCCCCCCCcC---HH--------HHHHHHHH
Q 011766 314 HCPASAMR-----------M---------LGFAPIKEMLHADICVSLGTDGAPSNNRMS---IV--------DEMYLASL 362 (478)
Q Consensus 314 ~~p~~~~~-----------~---------~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~---~~--------~~~~~~~~ 362 (478)
+||.+... . ....++.+++++|+.+++|||++++..... ++ -++....+
T Consensus 255 ~~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~~~~l~~~l~~G~~~~i~sDh~p~~~~~k~~~~~~~~~G~~g~e~~~~~~ 334 (423)
T PRK09357 255 VTPHHLLLTDEDLLTYDPNYKVNPPLRTEEDREALIEGLKDGTIDAIATDHAPHAREEKECEFEAAPFGITGLETALSLL 334 (423)
T ss_pred echHHheEcHHHHhCcCCceEECCCCCCHHHHHHHHHHHHcCCCeEEecCCCCCChHHccCCHhhCCCCceEHHHHHHHH
Confidence 88854210 0 123456788999999999999987643211 11 11122221
Q ss_pred HhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhh---hhhhccC
Q 011766 363 INKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRIT---SLVYCMR 439 (478)
Q Consensus 363 ~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~---~~~~~~~ 439 (478)
.... .....++++++++++|.|||+++|+.+ |+|++|++|||+|+|.+..+..+.++..+ ...+...
T Consensus 335 ~~~~--------~~~~~~~~~~~~~~~t~~~A~~~g~~~--G~i~~G~~AD~~i~d~~~~~~v~~~~~~~~~~~~p~~g~ 404 (423)
T PRK09357 335 YTTL--------VKTGLLDLEQLLEKMTINPARILGLPA--GPLAEGEPADLVIFDPEAEWTVDGEDFASKGKNTPFIGM 404 (423)
T ss_pred HHHH--------HHcCCCCHHHHHHHHhHHHHHHhCCCC--CccCCCCcCCEEEEcCCCCEEEchhhcccCCCCCCCcCC
Confidence 1110 012369999999999999999999954 99999999999999988543222221111 1111111
Q ss_pred --CCCeeEEEEccEEEEEC
Q 011766 440 --TENVVSVMCNGQWVMKN 456 (478)
Q Consensus 440 --~~~v~~v~v~G~~v~~~ 456 (478)
..+|..||++|++||++
T Consensus 405 ~~~g~v~~t~v~G~~v~~~ 423 (423)
T PRK09357 405 KLKGKVVYTIVDGKIVYQD 423 (423)
T ss_pred EEeeEEEEEEECCEEEecC
Confidence 35799999999999975
|
|
| >cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-32 Score=258.57 Aligned_cols=300 Identities=19% Similarity=0.146 Sum_probs=197.5
Q ss_pred eEEeCCCCEEeecccccccccchhhhccccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc
Q 011766 69 QIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ 148 (478)
Q Consensus 69 ~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~ 148 (478)
++||++|++|+|||||+|+|+..... ....| ....++..........+.++.+||||++++++.
T Consensus 2 ~vID~~g~~v~PGliD~H~Hl~~~~~-------~~~~~---------~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~g~~ 65 (342)
T cd01299 2 QVIDLGGKTLMPGLIDAHTHLGSDPG-------DLPLD---------LALPVEYRTIRATRQARAALRAGFTTVRDAGGA 65 (342)
T ss_pred cEEeCCCCEECCCeeeeeeeccccCC-------Ccccc---------ccCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCc
Confidence 68999999999999999999844210 00000 001222333344457788999999999999865
Q ss_pred CHHHHHHHHHH----hCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEE
Q 011766 149 HVSEMAKAVEL----LGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWF 224 (478)
Q Consensus 149 ~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (478)
.... .+.... .|.+.+.....+....+.... ..........+ ....-...++.++.++++...+.+.+|++.
T Consensus 66 ~~~~-~~~~~~~g~~~gPr~~~~G~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~G~~~iK~~~ 141 (342)
T cd01299 66 DYGL-LRDAIDAGLIPGPRVFASGRALSQTGGHGDP-RGLSGLFPAGG--LAAVVDGVEEVRAAVREQLRRGADQIKIMA 141 (342)
T ss_pred chHH-HHHHHHcCCccCCceeecchhhcccCCCCcc-ccccccccccC--CcceecCHHHHHHHHHHHHHhCCCEEEEec
Confidence 4333 232233 355555554444321111110 00000000000 000001122566777777778888898876
Q ss_pred eccc--------cccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeecc
Q 011766 225 GIRQ--------IMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVW 296 (478)
Q Consensus 225 ~~~~--------~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~ 296 (478)
.... ....+++.+.++++.|++.|+++.+|+.+...... .+ ..+ ...+.|+..
T Consensus 142 ~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~--------------~l-~~G----~~~i~H~~~ 202 (342)
T cd01299 142 TGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGAEAIRR--------------AI-RAG----VDTIEHGFL 202 (342)
T ss_pred cCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH--------------HH-HcC----CCEEeecCC
Confidence 4321 12468899999999999999999999986432111 11 112 235899999
Q ss_pred CChhHHHHHHhcCCeEEECccchhh----------------------ccCCCcHHHHHHCCCcEEEcCCCCC-CCCCcCH
Q 011766 297 VNHTEIGLLSRAGVKVSHCPASAMR----------------------MLGFAPIKEMLHADICVSLGTDGAP-SNNRMSI 353 (478)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~p~~~~~----------------------~~~~~~~~~~~~~gv~v~~gsD~~~-~~~~~~~ 353 (478)
+++++++++++.|+.++.||..+.. .....+++.+.++|+++++|||.+. .....++
T Consensus 203 ~~~~~~~~l~~~g~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~GTD~~~~~~~~~~~ 282 (342)
T cd01299 203 IDDETIELMKEKGIFLVPTLATYEALAAEGAAPGLPADSAEKVALVLEAGRDALRRAHKAGVKIAFGTDAGFPVPPHGWN 282 (342)
T ss_pred CCHHHHHHHHHCCcEEeCcHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCchhHH
Confidence 9999999999999999999886432 1234678899999999999999864 2122345
Q ss_pred HHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCC
Q 011766 354 VDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSW 422 (478)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~ 422 (478)
+.++..... .++|++++|+++|.+||+++|+++++|+|++||.|||+|+|.|++
T Consensus 283 ~~e~~~~~~---------------~~~~~~~al~~~T~~~a~~~g~~~~~G~i~~G~~ADlvvl~~~pl 336 (342)
T cd01299 283 ARELELLVK---------------AGGTPAEALRAATANAAELLGLSDELGVIEAGKLADLLVVDGDPL 336 (342)
T ss_pred HHHHHHHHH---------------hCCCHHHHHHHHHHHHHHHhCccCCcceECCCCcCCEEEECCChh
Confidence 555543321 258999999999999999999988899999999999999999844
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >PRK09237 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-31 Score=254.07 Aligned_cols=355 Identities=17% Similarity=0.160 Sum_probs=216.1
Q ss_pred eEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCC
Q 011766 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (478)
Q Consensus 21 ~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~ 100 (478)
++|+|++|+++.. ......+|+|++|||++|++..+. ..+.++||++|++|+|||||+|+|+....
T Consensus 1 ~~i~~~~v~d~~~--~~~~~~~v~i~~g~I~~v~~~~~~-----~~~~~~iD~~g~~v~PG~iD~H~H~~~~~------- 66 (380)
T PRK09237 1 LLLRGGRVIDPAN--GIDGVIDIAIEDGKIAAVAGDIDG-----SQAKKVIDLSGLYVSPGWIDLHVHVYPGS------- 66 (380)
T ss_pred CEEEeEEEECCCC--CcccceEEEEECCEEEEecCCCCC-----CCCCeEEECCCCEEecCEEEeeecCCCCC-------
Confidence 4799999996543 334567999999999999875331 12558999999999999999999984210
Q ss_pred CCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc---CHHHHHHHHHHh-CCeEEEecccccCCCC
Q 011766 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ---HVSEMAKAVELL-GLRACLVQSTMDCGEG 176 (478)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~---~~~~~~~~~~~~-g~~~~~~~~~~~~~~~ 176 (478)
..... ...+.++.+||||+++++.. ....+.+..... +.+......+...+..
T Consensus 67 --------------~~~~~---------~~~~~~~~~G~Ttv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~ 123 (380)
T PRK09237 67 --------------TPYGD---------EPDEVGVRSGVTTVVDAGSAGADNFDDFRKLTIEASKTRVLAFLNISRIGLL 123 (380)
T ss_pred --------------CccCC---------CHHHHHHhCCcCEEEECCCCCCCCHHHHHHHHHhhhCcEEEEEEeeeccccc
Confidence 00000 11234789999999996532 334444444443 5543322111111111
Q ss_pred CCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEecc
Q 011766 177 LPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVA 256 (478)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~ 256 (478)
.+. +...... +......+.+.++... ...++.............+.+.....++++.|+++.+|+.
T Consensus 124 ~~~-~~~~~~~------------~~~~~~~~~~~~~~~~-v~glk~~~~~~v~~~~~~~~~~~~~~~a~~~g~~v~~H~~ 189 (380)
T PRK09237 124 AQD-ELADLED------------IDADAVAEAVKRNPDF-IVGIKARMSSSVVGDNGIEPLELAKAIAAEANLPLMVHIG 189 (380)
T ss_pred ccc-hhcCHhH------------CCHHHHHHHHHhCcCc-EEEEEEEEecccccccCCchHHHHHHHHHhcCCCEEEEcC
Confidence 110 0000000 1112444445443321 1123322222111111113444555566689999999996
Q ss_pred CChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCCh-----------hHHHHHHhcCCeEEECccchhhccCC
Q 011766 257 EIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH-----------TEIGLLSRAGVKVSHCPASAMRMLGF 325 (478)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~-----------~~~~~~~~~~~~~~~~p~~~~~~~~~ 325 (478)
+.......+. . .+.....+.||...++ +....+.+.|..+.+...... ...
T Consensus 190 ~~~~~~~~l~-------------~---~l~~g~~~~H~~~~~~~~~~~~~~~~~~~a~~~l~~G~~~~ig~g~~~--~~~ 251 (380)
T PRK09237 190 NPPPSLEEIL-------------E---LLRPGDILTHCFNGKPNRILDEDGELRPSVLEALERGVRLDVGHGTAS--FSF 251 (380)
T ss_pred CCCCCHHHHH-------------h---hccCCCEEEecCCCCCCCccCCCCcchHHHHHHHHCCEEEEecCCCCc--ccH
Confidence 6543222211 1 1122235788887765 567777888888876532210 123
Q ss_pred CcHHHHHHCCC-cEEEcCCCCCCC-CCc---CHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 011766 326 APIKEMLHADI-CVSLGTDGAPSN-NRM---SIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWD 400 (478)
Q Consensus 326 ~~~~~~~~~gv-~v~~gsD~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~ 400 (478)
.+...++++|+ +.+++||..+.. ... .+...+.... +.+++++++++++|.|||+++|+
T Consensus 252 ~~~~~l~~~g~~~~~l~tD~~~~~~~~~~~~~l~~~~~~~~---------------~~g~~~~~al~~aT~n~A~~lgl- 315 (380)
T PRK09237 252 KVAEAAIAAGILPDTISTDIYCRNRINGPVYSLATVMSKFL---------------ALGMPLEEVIAAVTKNAADALRL- 315 (380)
T ss_pred HHHHHHHHCCCCceEEECCCCCCCcccchHhHHHHHHHHHH---------------HhCCCHHHHHHHHHHHHHHHcCC-
Confidence 45567788885 679999975532 111 1222222211 12699999999999999999999
Q ss_pred CCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeec
Q 011766 401 NDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILL 461 (478)
Q Consensus 401 ~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~ 461 (478)
+++|+|++|+.|||++++.+... .+..|+...+++..+...+..||++|+++|.+.....
T Consensus 316 ~~~G~l~~G~~ADlvv~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~v~G~~~~~~~~~~~ 375 (380)
T PRK09237 316 PELGRLQVGSDADLTLFTLKDGP-FTLTDSEGDSLIGERLLTPLATVRGGKVVLTEQGSAE 375 (380)
T ss_pred CCCCcCCCCCcCCEEEEeCCCCC-ccccCCCCCEEEecCCCcceEEEECCEEEEccCcccc
Confidence 56899999999999999976444 3567888888787788899999999999998765543
|
|
| >TIGR03178 allantoinase allantoinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-32 Score=264.71 Aligned_cols=371 Identities=18% Similarity=0.194 Sum_probs=214.5
Q ss_pred eeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccC
Q 011766 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (478)
Q Consensus 20 ~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~ 99 (478)
|++|+|++|+++++ ...++|+|+||+|++|++... ..+.++||++|++|+|||||+|+|+....
T Consensus 1 dl~i~~~~v~~~~~----~~~~~v~i~dg~I~~i~~~~~------~~~~~~id~~g~~v~PG~ID~H~H~~~~~------ 64 (443)
T TIGR03178 1 DLIIRGGRVILPNG----EREADVGVKGGKIAAIGPDIL------GPAAKIIDAGGLVVFPGVVDTHVHINEPG------ 64 (443)
T ss_pred CEEEECcEEECCCC----ceEEEEEEECCEEEEeeCCCC------CCCCeEEECCCCEEeccEeccccccCCCC------
Confidence 57899999997543 245799999999999987421 12568999999999999999999984210
Q ss_pred CCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCC-ccCH----H-HHHHHHHHhCCeEEEecccccC
Q 011766 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG-GQHV----S-EMAKAVELLGLRACLVQSTMDC 173 (478)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~-~~~~----~-~~~~~~~~~g~~~~~~~~~~~~ 173 (478)
... +.......+.++++|||++++++ .... . ......+...-...+..... .
T Consensus 65 ------------------~~~---~~~~~~~~~~~~~gGvTtv~dmp~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~-~ 122 (443)
T TIGR03178 65 ------------------RTE---WEGFETGTRAAAAGGITTYIDMPLNSIPATTTRASLEAKFEAAKGKLAVDVGFW-G 122 (443)
T ss_pred ------------------ccc---cchHHHHHHHHHcCCeEEEEECCCCCCCCCCcHHHHHHHHHHhccCCceeEEEE-e
Confidence 000 01122344568999999999986 2211 1 11111221111111111110 0
Q ss_pred CCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEecccc---ccCCHHHHHHHHHHHHHcCCc
Q 011766 174 GEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQI---MNATDRLLLETRDMAREFKTG 250 (478)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~a~~~~~~ 250 (478)
+ . .. ...+.+..+...+...++++.++.+. ...+.+.+.++++.+++.|+.
T Consensus 123 ~--~--------~~----------------~~~~~i~~~~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~ 176 (443)
T TIGR03178 123 G--L--------VP----------------YNLDDLRELDEAGVVGFKAFLSPSGDDEFPHVDDWQLYKGMRELARLGQL 176 (443)
T ss_pred c--c--------CC----------------CCHHHHHHHHHCCCcEEEEEecccCCCCcccCCHHHHHHHHHHHHhcCCe
Confidence 0 0 00 11222344444444556665544322 356788899999999999999
Q ss_pred eeEeccCChhhhHHH---hhhcC-------CCCc--------hHHHHhhhCCCCCCeeeeeeccC-ChhHHHHHHhcCCe
Q 011766 251 IHMHVAEIPYENQVV---MDTRK-------VDHG--------TVTFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAGVK 311 (478)
Q Consensus 251 v~~H~~~~~~~~~~~---~~~~~-------~~~~--------~~~~l~~~~~~~~~~~i~h~~~~-~~~~~~~~~~~~~~ 311 (478)
+++|+... ...... ....+ ...+ ....+......+.+..+.|.+.. +-+.++.+++.|..
T Consensus 177 v~~H~E~~-~~~~~~~~~~~~~g~~~~~~~~~~~p~~ae~~~~~~~~~la~~~g~~vhi~Hiss~~~~~~i~~~~~~g~~ 255 (443)
T TIGR03178 177 LLVHAENP-AITSALGEEAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKVTGCRVHVVHLSSAEAVELITEAKQEGLD 255 (443)
T ss_pred EEEeccCh-HHHHHHHHHHHhcCCCChhHhcCcCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCc
Confidence 99996443 221110 00000 0000 11122222333445555555542 12445555666644
Q ss_pred --EEECccchhh------c-----cCCCc---------HHHHHHCCCcEEEcCCCCCCCC----CcCHHH--------HH
Q 011766 312 --VSHCPASAMR------M-----LGFAP---------IKEMLHADICVSLGTDGAPSNN----RMSIVD--------EM 357 (478)
Q Consensus 312 --~~~~p~~~~~------~-----~~~~~---------~~~~~~~gv~v~~gsD~~~~~~----~~~~~~--------~~ 357 (478)
+.+||..... . ...+| +.+.++.|+..+++||+.|+.. ..+++. +.
T Consensus 256 it~e~~ph~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~~i~SDh~p~~~~~K~~~~~~~~~~G~~g~e~ 335 (443)
T TIGR03178 256 VTVETCPHYLTLTAEEVPDGGTLAKCAPPIRDLANQEGLWEALLNGLIDCVVSDHSPCTPDLKRAGDFFKAWGGIAGLQS 335 (443)
T ss_pred EEEEECccceEecHHHhhCcCcceEEcCCCCChHHHHHHHHHHHcCCccEEeCCCCCCChHHcCcCChhhCCCCeeEHHH
Confidence 4567775310 0 11122 3355788999999999987631 112211 01
Q ss_pred HHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCC-CCCCCCc-------CC
Q 011766 358 YLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF-SWPMVPV-------HD 429 (478)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~-~~~~~~~-------~d 429 (478)
.+..+... ...+.++|++++++++|.|||+++|+ +++|+|++|+.|||||+|.+ ++...+. .+
T Consensus 336 ~l~~~~~~--------~~~~~~l~~~~~~~~~t~~pA~~~g~-~~~G~l~~G~~Ad~vi~d~~~~~~~~~~~~~~~~~~~ 406 (443)
T TIGR03178 336 TLDVMFDE--------AVQKRGLPLEDIARLMATNPAKRFGL-AQKGRIAPGKDADFVFVDPDESYTLTPDDLYYRHKVS 406 (443)
T ss_pred hHHHHHHH--------HHHhcCCCHHHHHHHHhHHHHHHcCC-CCCCccCCCCcCCEEEEcCCCcEEEcHHHhhhcCCCC
Confidence 11111100 00123599999999999999999999 55799999999999999996 3322211 22
Q ss_pred hhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHH
Q 011766 430 RITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRL 467 (478)
Q Consensus 430 ~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~ 467 (478)
|+..... ..+|.+||++|++||++|++++...|++
T Consensus 407 p~~g~~~---~g~v~~t~v~G~~v~~~g~~~~~~~g~~ 441 (443)
T TIGR03178 407 PYVGRTI---GGRVRATYLRGQCIYDDEQFIGAPKGQL 441 (443)
T ss_pred CcCCcEE---eeEEEEEEECCEEEEECCeeccCCCCcc
Confidence 3332211 3579999999999999999876555554
|
This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases. |
| >TIGR01792 urease_alph urease, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-31 Score=254.21 Aligned_cols=337 Identities=17% Similarity=0.160 Sum_probs=199.1
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhh--hhh---ccCCCeEEeCCCCEEeecccccccccch
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADIL--QQF---SQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~--~~~---~~~~~~viD~~G~~v~PGfID~H~H~~~ 91 (478)
..++++|+|++|++. . . +.+++|+|+||||++|++..... ..+ ...++++||++|++|+|||||+|+|+..
T Consensus 64 ~~MDlVIkNg~VID~--~-g-i~kaDI~IkDGrIaaIG~~~~p~~~~~v~~~~~~~tEVIDa~GkIV~PGlIDtHvH~~~ 139 (567)
T TIGR01792 64 GVLDLVITNALILDW--T-G-IYKADIGIKNGRIVGIGKAGNPDTMDGVDMIVGASTEAISGEGKIVTAGGIDTHVHYIS 139 (567)
T ss_pred ccCcEEEECeEEECC--C-C-eEEEEEEEECCEEEEEcCCCcccccccccccCCCCCeEEECCCCEEEECeEEeecCCCC
Confidence 467899999999963 2 2 46789999999999999753210 000 0135689999999999999999999821
Q ss_pred hhhccccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC---------------HHHHHHH
Q 011766 92 QLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH---------------VSEMAKA 156 (478)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~---------------~~~~~~~ 156 (478)
+. ..+.++..|||++++.|... ...+.+.
T Consensus 140 ----------------------------P~--------~~~aAl~gGVTTmI~~Gtgp~~~t~pTt~t~~~~~~~~~l~a 183 (567)
T TIGR01792 140 ----------------------------PQ--------QVQAALDNGITTLIGGGTGPADGTNATTCTPGPWYLHRMLQA 183 (567)
T ss_pred ----------------------------cc--------HHHHHHhCceEEEecCCCccccCCCCcccccchhhHHHHHHH
Confidence 11 13457899999999954310 1112233
Q ss_pred HHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHH
Q 011766 157 VELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRL 236 (478)
Q Consensus 157 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (478)
....+++... +..+ . . ...+.+.+....+. + .+.++..+..+++.
T Consensus 184 a~~~~in~g~----~g~g--~---------~----------------~~~~~L~e~i~aGa--~--gfK~h~~y~~s~e~ 228 (567)
T TIGR01792 184 ADGLPINFGF----TGKG--S---------G----------------SGPAALIEQIEAGA--C--GLKVHEDWGATPAA 228 (567)
T ss_pred hccCCccEEE----EeCC--c---------c----------------chHHHHHHHHHcCC--c--EEEeCCCCCCCHHH
Confidence 3333333211 0000 0 0 01111222222222 2 25667778899999
Q ss_pred HHHHHHHHHHcCCceeEeccCChhh---hHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCC---
Q 011766 237 LLETRDMAREFKTGIHMHVAEIPYE---NQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGV--- 310 (478)
Q Consensus 237 l~~~~~~a~~~~~~v~~H~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~--- 310 (478)
+.++++.|+++++++++|+ +...+ .+...... +.++++.++..+.-.. | .|+.++.+...++
T Consensus 229 L~~al~~A~e~gv~V~iH~-ET~~E~g~ve~t~~a~--g~rpIh~~H~~G~g~g-----h----apdi~~~~~~~~~~~~ 296 (567)
T TIGR01792 229 IDNALSVADEYDVQVAVHT-DTLNESGFVEDTIAAF--KGRTIHTYHTEGAGGG-----H----APDIIVVVGYNNILPS 296 (567)
T ss_pred HHHHHHHHHHcCCEEEEeC-CCcccchHHHHHHHHH--CCCcchhHhhcCCCCC-----c----HHHHHHHcCCCCcccC
Confidence 9999999999999999999 66655 33333322 2345555555443221 1 1222222222221
Q ss_pred ------------------eEEECccchh-------------hccCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHH-HH
Q 011766 311 ------------------KVSHCPASAM-------------RMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDE-MY 358 (478)
Q Consensus 311 ------------------~~~~~p~~~~-------------~~~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~-~~ 358 (478)
.+.+|...+. |...+..-..|.+.|+..+++||+.+.+.-...... .+
T Consensus 297 st~pt~p~~~~~~~e~~~m~~~~h~l~~~~~~d~~~a~~r~r~~t~~ae~~l~d~G~~~~~~sDs~~mgr~~~~~~r~~q 376 (567)
T TIGR01792 297 STNPTLPYTVNTIDEHLDMLMVCHHLNPKIPEDVAFAESRIRKETIAAEDVLQDMGAISMISSDSQAMGRIGEVVTRCWQ 376 (567)
T ss_pred CCCCCCCCccCchhhhcCeEEEeccCCCCCcccchhhhhhccceeccccchhhhCCcEEEecCCchhhCcccceeechHH
Confidence 2222222111 112233334678899999999998643221111111 11
Q ss_pred HHHHHhcccccc--cCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhh
Q 011766 359 LASLINKGREVF--ANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVY 436 (478)
Q Consensus 359 ~~~~~~~~~~~~--~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~ 436 (478)
.+......+... ...+...+.++++ |+++|.|||+++|+++++|+|++||.||||||+.+++.
T Consensus 377 ~a~k~~~~~g~~~~~~~~~~~~rl~r~--L~~yT~n~A~a~g~~~~~GsLe~Gk~ADlVv~~~d~f~------------- 441 (567)
T TIGR01792 377 TADKMKKQRGPLPGDSPGNDNNRVKRY--VAKYTINPAITHGISDYIGSIEVGKLADLVLWEPAFFG------------- 441 (567)
T ss_pred HHHHHHHhcCCCcccccCChhhhHHHH--HHHHhHHHHHHcCcccCceeeCCCCccCEEEEcCcccC-------------
Confidence 222222111111 1111122334444 99999999999999999999999999999999998543
Q ss_pred ccCCCCeeEEEEccEEEEEC-Cee
Q 011766 437 CMRTENVVSVMCNGQWVMKN-KKI 459 (478)
Q Consensus 437 ~~~~~~v~~v~v~G~~v~~~-g~~ 459 (478)
..+..||++|+++|.. |..
T Consensus 442 ----~~p~~v~~~G~i~~~~~Gd~ 461 (567)
T TIGR01792 442 ----VKPDMVLKGGLIAWAIMGDP 461 (567)
T ss_pred ----CChheEEECCEEEEEeCCCc
Confidence 3577999999999876 543
|
This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor. |
| >PRK13207 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-30 Score=249.88 Aligned_cols=333 Identities=18% Similarity=0.179 Sum_probs=204.4
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhh-----hhccCCCeEEeCCCCEEeecccccccccch
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQ-----QFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~-----~~~~~~~~viD~~G~~v~PGfID~H~H~~~ 91 (478)
..++++|+|++|+++ . . +..++|+|+||||++|++...... .....+.++||++|++|+|||||+|+|+..
T Consensus 65 ~~mDlVI~Na~Vvd~--~-g-i~~adI~I~dGrI~~IG~~~~p~~~~~v~~~~~~~~eVIDa~G~iV~PG~ID~HvH~~~ 140 (568)
T PRK13207 65 GAVDTVITNALILDH--W-G-IVKADIGIKDGRIVAIGKAGNPDIQDGVDIIIGPGTEVIAGEGLIVTAGGIDTHIHFIC 140 (568)
T ss_pred ccCCEEEECeEEECC--C-C-eEEEEEEEECCEEEEEeCCCCccccccccccCCCCCeEEECCCCEEEeCeEECccCCcc
Confidence 457899999999964 2 2 356899999999999997421100 001135689999999999999999999821
Q ss_pred hhhccccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC-----H-------HHHHHHH--
Q 011766 92 QLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-----V-------SEMAKAV-- 157 (478)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~-----~-------~~~~~~~-- 157 (478)
+.. .+.++.+||||+++++... . .......
T Consensus 141 ----------------------------P~~--------~~aALagGVTTVi~mg~gP~~gt~~~t~tpG~~~l~~~l~~ 184 (568)
T PRK13207 141 ----------------------------PQQ--------IEEALASGVTTMIGGGTGPATGTNATTCTPGPWHIHRMLQA 184 (568)
T ss_pred ----------------------------ccH--------HHHHHcCCCCEEEcCCcCCccCCcccccccchHHHHHHHHH
Confidence 000 2457999999999974211 0 1111111
Q ss_pred -HHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHH
Q 011766 158 -ELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRL 236 (478)
Q Consensus 158 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (478)
+...+... ....+ .. ...+.+++....+...+++. ..+..+++.
T Consensus 185 a~~~pin~g----~~g~g-----------~~----------------~~~~~L~e~i~aGA~gfKi~----~d~g~t~~~ 229 (568)
T PRK13207 185 ADAFPMNIG----FLGKG-----------NA----------------SLPEALEEQIEAGAIGLKLH----EDWGATPAA 229 (568)
T ss_pred hhcCCceEE----EEcCC-----------Cc----------------ccHHHHHHHHHcCCCEEeec----CCCCCCHHH
Confidence 11111000 00000 00 11222333334444445432 223457889
Q ss_pred HHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeecc-------CChhHHHHHHhcC
Q 011766 237 LLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVW-------VNHTEIGLLSRAG 309 (478)
Q Consensus 237 l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~-------~~~~~~~~~~~~~ 309 (478)
+.++++.|+++|+++.+|+....... +.+. .......+ ..|..| -.++.++.+...+
T Consensus 230 l~~aL~~A~~~gv~V~iHa~tlne~G------------~~e~--t~~a~~g~--~iH~~H~egaggghapdii~~~~~~~ 293 (568)
T PRK13207 230 IDNCLSVADEYDVQVAIHTDTLNESG------------FVED--TIAAFKGR--TIHTFHTEGAGGGHAPDIIKVAGEPN 293 (568)
T ss_pred HHHHHHHHHHhCCEEEEeCCCcccch------------HHHH--HHHhcCCC--EEEEEeecCCCcCCchHHHHHhhcCC
Confidence 99999999999999999996432210 1111 01111111 234443 3467777777777
Q ss_pred CeEE-ECccchh---------------------------------hccCCCcHHHHHHCCCcEEEcCCCCCCC-CCcCHH
Q 011766 310 VKVS-HCPASAM---------------------------------RMLGFAPIKEMLHADICVSLGTDGAPSN-NRMSIV 354 (478)
Q Consensus 310 ~~~~-~~p~~~~---------------------------------~~~~~~~~~~~~~~gv~v~~gsD~~~~~-~~~~~~ 354 (478)
+--+ +.|+.-+ |...+..=.-+++.|+.++++||++..+ -..+++
T Consensus 294 v~p~st~pt~p~~~~~~~e~~~m~m~~h~l~~~~~~d~~~a~srir~~t~~ae~~l~d~Ga~~~~~SD~p~~~~~~~~~~ 373 (568)
T PRK13207 294 VLPSSTNPTRPYTVNTIDEHLDMLMVCHHLDPSIPEDVAFAESRIRRETIAAEDILHDLGAISMISSDSQAMGRVGEVII 373 (568)
T ss_pred CccCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhccceeecccchhhhCCCEEEecCCcccccccccchh
Confidence 6433 3333110 0011222236789999999999997652 125677
Q ss_pred HHHHHHHHHhcccccc--cCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhh
Q 011766 355 DEMYLASLINKGREVF--ANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRIT 432 (478)
Q Consensus 355 ~~~~~~~~~~~~~~~~--~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~ 432 (478)
..++.+......+... ..++.+.+.+++. |+++|.|||+++|+++.+|+|++||.||||+|+.+.+.
T Consensus 374 r~~q~A~~r~~~~G~~~~d~~~~~n~ri~~~--l~~~T~npA~alG~~~~vGsIe~Gk~ADlVvld~d~f~--------- 442 (568)
T PRK13207 374 RTWQTAHKMKVQRGPLPGDSGRNDNFRVKRY--IAKYTINPAIAHGISHEVGSVEVGKLADLVLWKPAFFG--------- 442 (568)
T ss_pred HHHHHHHHHHHccCCCCcccccCccchHHHH--HHHHhHHHHHHcCCCcCccccCCCCcCCEEEECchhcC---------
Confidence 8788777665332221 1122233334444 99999999999999988999999999999999997432
Q ss_pred hhhhccCCCCeeEEEEccEEEEEC-Cee
Q 011766 433 SLVYCMRTENVVSVMCNGQWVMKN-KKI 459 (478)
Q Consensus 433 ~~~~~~~~~~v~~v~v~G~~v~~~-g~~ 459 (478)
.++..||++|+++|.. |..
T Consensus 443 --------~~~~~ti~~G~iv~~~~gd~ 462 (568)
T PRK13207 443 --------VKPELVLKGGMIAWAPMGDP 462 (568)
T ss_pred --------CCceEEEECCEEEEecCCCc
Confidence 4688999999999987 554
|
|
| >PRK09061 D-glutamate deacylase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.5e-30 Score=255.25 Aligned_cols=373 Identities=19% Similarity=0.170 Sum_probs=218.5
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~ 96 (478)
.+++++|+|++|+++++ .....++|+|+||+|++|++... .+.++||++|++|+|||||+|+|....
T Consensus 17 ~~~~~li~~~~vid~~~--~~~~~~~v~I~~G~I~~ig~~~~-------~~~~viD~~g~~v~PG~ID~H~H~~~~---- 83 (509)
T PRK09061 17 APYDLVIRNGRVVDPET--GLDAVRDVGIKGGKIAAVGTAAI-------EGDRTIDATGLVVAPGFIDLHAHGQSV---- 83 (509)
T ss_pred ccCCEEEECcEEEeCCC--CeeccceEEEECCEEEEecCCCC-------CCCeEEeCCCCEEecCeEeeeeCCCCC----
Confidence 45789999999997543 33355799999999999987421 245899999999999999999997210
Q ss_pred ccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCC-ccC-HHHHHHHHHHhCCeEEEec-cccc-
Q 011766 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG-GQH-VSEMAKAVELLGLRACLVQ-STMD- 172 (478)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~-~~~-~~~~~~~~~~~g~~~~~~~-~~~~- 172 (478)
. ....++..||||++++. +.. .....+.....+....++. ....
T Consensus 84 ------------------------~--------~~~~~~~~GvTtvv~~~~~~~p~~~~~~~~~~~~~~vn~~~~~~~~~ 131 (509)
T PRK09061 84 ------------------------A--------AYRMQAFDGVTTALELEAGVLPVARWYAEQAGEGRPLNYGASVGWTP 131 (509)
T ss_pred ------------------------c--------cchhhccCCceeEEeeccCCCCHHHHHHHHHhcCCcceeehhcCcHH
Confidence 0 01235778999999872 322 2233333333332211111 0000
Q ss_pred ------CCCCCCCc------------ccc-cCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCC
Q 011766 173 ------CGEGLPAS------------WAV-RTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNAT 233 (478)
Q Consensus 173 ------~~~~~~~~------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (478)
.+...... +.. ..+...+. +..+++++..+.+...++. +....+..+
T Consensus 132 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~------------~m~~ll~~al~~Ga~gis~--~~~y~p~~~ 197 (509)
T PRK09061 132 ARIAVLTGPQAEGTIADFGKALGDPRWQERAATPAELA------------EILELLEQGLDEGALGIGI--GAGYAPGTG 197 (509)
T ss_pred HHHHHhCCcccccccccccccccccccccCCCCHHHHH------------HHHHHHHHHHHCCCCEEec--CCccCCCCC
Confidence 00000000 000 00001011 2344444433444444432 223334568
Q ss_pred HHHHHHHHHHHHHcCCceeEeccCChhh--hHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCCh-------hHHHH
Q 011766 234 DRLLLETRDMAREFKTGIHMHVAEIPYE--NQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH-------TEIGL 304 (478)
Q Consensus 234 ~~~l~~~~~~a~~~~~~v~~H~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~-------~~~~~ 304 (478)
.+.+.++++.++++|.++.+|+.+.... ..... ...+.+......+.+..+.|...... +.+++
T Consensus 198 ~~eL~~l~~~A~~~g~~v~~H~e~~~~~~~~~e~~-------av~~~i~lA~~~G~rv~IsHlss~g~~~~~~~le~I~~ 270 (509)
T PRK09061 198 HKEYLELARLAARAGVPTYTHVRYLSNVDPRSSVD-------AYQELIAAAAETGAHMHICHVNSTSLRDIDRCLALVEK 270 (509)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCcccCCchhHHH-------HHHHHHHHHHHhCCCEEEEeeccCCcccHHHHHHHHHH
Confidence 8899999999999999999999765320 00000 01234444445556788889887542 44666
Q ss_pred HHhcCCeE--EECccc-----------h--hhc----------c---C--------------------------------
Q 011766 305 LSRAGVKV--SHCPAS-----------A--MRM----------L---G-------------------------------- 324 (478)
Q Consensus 305 ~~~~~~~~--~~~p~~-----------~--~~~----------~---~-------------------------------- 324 (478)
+++.|+.+ .+||+. + ... . +
T Consensus 271 Ar~~Gi~Vt~e~~P~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (509)
T PRK09061 271 AQAQGLDVTTEAYPYGAGSTVVGAAFFDPGWLERMGLGYGSLQWVETGERLLTREELAKLRANDPGGLVLIHFLDEDNPR 350 (509)
T ss_pred HHHcCCcEEEEecCcchhhhhhcccccCHHHHHHhCCCHHHheehhcccccCCHHHHHHHhccCCCCeEEEEeccCCCCc
Confidence 67777654 677776 1 000 0 0
Q ss_pred -CCcHHHHHHCCCcEEEcCCCCCCCCCc-------------CHHHHHHH----HHHHhcccccccCCCCCCCCCCHHHHH
Q 011766 325 -FAPIKEMLHADICVSLGTDGAPSNNRM-------------SIVDEMYL----ASLINKGREVFANGTTDPAALPAETVL 386 (478)
Q Consensus 325 -~~~~~~~~~~gv~v~~gsD~~~~~~~~-------------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ls~~~al 386 (478)
...+...+..+. ++++||+.+..... ....+++. ...+... ......+|+++++
T Consensus 351 ~~~~l~~~l~~p~-~~i~sD~~p~~~~~~~~~~~~~~~~~~~~~~h~r~~~~~~~~l~~~-------v~~~~~isl~~ai 422 (509)
T PRK09061 351 DRALLDRSVLFPG-AAIASDAMPWTWSDGTVYEGDAWPLPEDAVSHPRSAGTFARFLREY-------VRERKALSLLEAI 422 (509)
T ss_pred cchhHHHHhCCCC-ceEecCCccccccccccccccccccccCCCCCchhhcchHHHHHHH-------HhhcccCCHHHHH
Confidence 111333444453 49999985431000 00100000 1111000 0112359999999
Q ss_pred HHHhHHHHHHcC-----CCCCccccccCccccEEEEcCCCCCCC-CcCChhhhhhhccCCCCeeEEEEccEEEEECCeee
Q 011766 387 RMATINGAKSVL-----WDNDIGSLEAGKKADMVVVDPFSWPMV-PVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKIL 460 (478)
Q Consensus 387 ~~~T~~pA~~lg-----l~~~~G~l~~G~~ADlvv~d~~~~~~~-~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~ 460 (478)
+++|.+||++|| +.+ .|+|++|+.|||+|||++.+... ...++. .....|.+||+||+++|++|+++
T Consensus 423 ~~~T~~pA~~lg~~~~~l~~-~G~i~~G~~ADlvv~D~~~~~~~~~~~~~~------~~~~gi~~v~v~G~~v~~~g~~~ 495 (509)
T PRK09061 423 RKCTLMPAQILEDSVPAMRR-KGRLQAGADADIVVFDPETITDRATFEDPN------RPSEGVRHVLVNGVPVVSNGELV 495 (509)
T ss_pred HHHHHHHHHHhccccccccC-CEeeCCCCCcCEEEEchhhccccccccccC------CCCCCceEEEECCEEEEECCEec
Confidence 999999999999 743 69999999999999998853322 122221 12246999999999999999985
Q ss_pred -cccHHHHHHH
Q 011766 461 -LLMRGRLFQL 470 (478)
Q Consensus 461 -~~~~~~~~~~ 470 (478)
+..+|+++|.
T Consensus 496 ~~~~~G~~lr~ 506 (509)
T PRK09061 496 RDARPGRPVRR 506 (509)
T ss_pred CCCCCCeEecC
Confidence 7889998864
|
|
| >PRK13206 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.9e-30 Score=247.92 Aligned_cols=330 Identities=19% Similarity=0.188 Sum_probs=197.8
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhh-------hhccCCCeEEeCCCCEEeeccccccccc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQ-------QFSQMADQIIDLQSQILLPGFVNTHVHT 89 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~-------~~~~~~~~viD~~G~~v~PGfID~H~H~ 89 (478)
..++++|+|++|++.. . ...++|.|+||+|++|++...... .+...++++||++|++|+|||||+|+|+
T Consensus 69 ~~~DlVI~Na~IiD~~---g-i~~adI~IkDGrIvaIG~~~~p~~~~gv~~~~~ig~~tevIDaeG~iV~PG~ID~HVH~ 144 (573)
T PRK13206 69 GAPDTVITGAVILDHW---G-IVKADVGIRDGRIVAIGKAGNPDIMDGVHPDLVIGPSTEIIAGNGRILTAGAIDCHVHF 144 (573)
T ss_pred CCCCEEEECeEEECCC---C-eEEEEEEEECCEEEEEeCCCCccccccccccccCCCCCEEEECCCCEEEeCEEeeeecc
Confidence 4678999999999532 2 245799999999999997431100 0112356899999999999999999998
Q ss_pred chhhhccccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCH------------H---HHH
Q 011766 90 SQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHV------------S---EMA 154 (478)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~------------~---~~~ 154 (478)
.. +. ..+.++++||||+++++.... . .+.
T Consensus 145 ~~----------------------------Pg--------~~~aALagGVTTvi~~G~gP~~~t~~~t~t~g~~~l~~~~ 188 (573)
T PRK13206 145 IC----------------------------PQ--------IVDEALAAGITTLIGGGTGPAEGSKATTVTPGAWHLARML 188 (573)
T ss_pred CC----------------------------ch--------HHHHHHcCCeEEEEcCCCCccccCcccccccchhHHHHHH
Confidence 21 00 014589999999998532210 0 111
Q ss_pred HHHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCH
Q 011766 155 KAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATD 234 (478)
Q Consensus 155 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (478)
+..+...+... +. +.+ . . ...+.+.++...+...++. +..+..++
T Consensus 189 ~aa~~~pvn~g----~~--g~g---------~----~------------~~~~~L~el~~aGA~GfKi----~~d~g~t~ 233 (573)
T PRK13206 189 EALDGWPVNVA----LL--GKG---------N----T------------VSAEALWEQLRGGAGGFKL----HEDWGSTP 233 (573)
T ss_pred HHhhcCceeEE----Ee--cCc---------C----c------------CCHHHHHHHHHCCCcEEee----cCccCCCH
Confidence 11111111000 00 000 0 0 1112344444444444443 23345788
Q ss_pred HHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHH-HhhhCCCCCCeeeeeeccCC----hhHHHHHHhcC
Q 011766 235 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTF-LDKIEFLQNNLLSAHTVWVN----HTEIGLLSRAG 309 (478)
Q Consensus 235 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~i~h~~~~~----~~~~~~~~~~~ 309 (478)
+.+.++++.|+++++++.+|+...... ++.+. +.+ ..+....+.|..... ++.++.+...+
T Consensus 234 ~~i~~aL~~A~~~gv~V~iHadtlne~------------g~~E~t~aa--~~gr~iH~~H~egaggghapd~~~~~~~~n 299 (573)
T PRK13206 234 AAIDACLRVADAAGVQVALHSDTLNEA------------GFVEDTLAA--IAGRSIHAYHTEGAGGGHAPDIITVASHPN 299 (573)
T ss_pred HHHHHHHHHHHHhCCEEEEECCCcccc------------chhhHHHHH--hcCCeEEEEeccCCCcCcccHHHHhcCCCC
Confidence 999999999999999999999653321 12221 111 111222223322211 33333333333
Q ss_pred Ce-EEECcc--------------------ch-------------hhccCCCcHHHHHHCCCcEEEcCCCCCCCCC----c
Q 011766 310 VK-VSHCPA--------------------SA-------------MRMLGFAPIKEMLHADICVSLGTDGAPSNNR----M 351 (478)
Q Consensus 310 ~~-~~~~p~--------------------~~-------------~~~~~~~~~~~~~~~gv~v~~gsD~~~~~~~----~ 351 (478)
+- -++.|+ .+ .|...+..=..|++.|+..+++||+++.+.- .
T Consensus 300 ~lp~stnpt~p~~~nt~~e~~~m~m~~h~l~~~~~~d~~fa~srir~~ti~ae~~l~d~G~~~~~~SDs~~~~~~~e~~~ 379 (573)
T PRK13206 300 VLPSSTNPTRPHTVNTLDEHLDMLMVCHHLNPAVPEDLAFAESRIRPSTIAAEDVLHDMGAISMIGSDSQAMGRIGEVVL 379 (573)
T ss_pred CcCCCCCCCCCCcccchhhhhCeEEeeccCCCCCcchhhhhhhhccceeeccCchHhhCCcEEeccCCccccccccchhh
Confidence 22 122222 11 0111222334788999999999999864322 2
Q ss_pred CHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChh
Q 011766 352 SIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRI 431 (478)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~ 431 (478)
.+|+....+. .+.....++...+.++.+++|+++|.|||+++|+++.+|+|++||.||||+||.+.+.
T Consensus 380 ~~~q~a~~~~----~rr~~l~g~~~~~~~~v~~al~~yT~nPA~alG~~~~~GsLe~Gk~ADlVvld~d~f~-------- 447 (573)
T PRK13206 380 RTWQTAHVMK----RRRGALPGDGRADNNRARRYVAKYTICPAVAHGIDHEIGSVEVGKLADLVLWEPAFFG-------- 447 (573)
T ss_pred hHHHHHHHHH----hccCCCCCCCcccchhHHHHHHHHHHHHHHHhCCCcCCcccCCCCcCCEEEECccccC--------
Confidence 3444443322 1222233444467799999999999999999999888999999999999999997432
Q ss_pred hhhhhccCCCCeeEEEEccEEEEEC
Q 011766 432 TSLVYCMRTENVVSVMCNGQWVMKN 456 (478)
Q Consensus 432 ~~~~~~~~~~~v~~v~v~G~~v~~~ 456 (478)
.++..||++|+++|..
T Consensus 448 ---------~~~~~ti~~G~iv~~~ 463 (573)
T PRK13206 448 ---------VRPHAVLKGGAIAWAA 463 (573)
T ss_pred ---------CCccEEEECCEEEEec
Confidence 3678999999999986
|
|
| >PRK07627 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.3e-31 Score=256.44 Aligned_cols=359 Identities=15% Similarity=0.143 Sum_probs=204.8
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcccc
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~ 98 (478)
|+++|+|++|+++.+ ....+++|+|+||||++|++... +..+.++||++|++|+|||||+|+|+....
T Consensus 1 m~~~i~~~~v~~~~~--~~~~~~~I~I~~g~I~~i~~~~~-----~~~~~~~iDa~g~~vlPG~iD~H~H~~~~g----- 68 (425)
T PRK07627 1 MKIHIKGGRLIDPAA--GTDRQADLYVAAGKIAAIGQAPA-----GFNADKTIDASGLIVCPGLVDLSARLREPG----- 68 (425)
T ss_pred CeEEEEeeEEECCCC--CccceeEEEEECCEEEEecCCCc-----CCCCCeEEECCCCEEeccEEeccccccCCC-----
Confidence 468999999996543 33456899999999999987421 113568999999999999999999993210
Q ss_pred CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCH----HHHHHHHH----H-hCCeEEEecc
Q 011766 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHV----SEMAKAVE----L-LGLRACLVQS 169 (478)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~----~~~~~~~~----~-~g~~~~~~~~ 169 (478)
+... .......+.++.+||||++++..... ........ . .+...+....
T Consensus 69 -------------------~~~~---e~~~t~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (425)
T PRK07627 69 -------------------YEYK---ATLESEMAAAVAGGVTSLVCPPDTDPVLDEPGLVEMLKFRARNLNQAHVYPLGA 126 (425)
T ss_pred -------------------cccc---CcHHHHHHHHHhCCeeEEEeCCCCCCCCCCHHHHHHHHHHhhccCceeEEEeCe
Confidence 0000 11122345689999999998753211 11111111 1 1222211111
Q ss_pred cccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCC
Q 011766 170 TMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKT 249 (478)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~ 249 (478)
.. .+ . .. .....+..+.+.+...++ ....+..+...+.+.++.+++.|.
T Consensus 127 ~~-~g--~--------~~----------------~~~~~i~~l~~~G~~~fk----~~~~~~~~~~~l~~~~~~~~~~~~ 175 (425)
T PRK07627 127 LT-VG--L--------KG----------------EVLTEMVELTEAGCVGFS----QANVPVVDTQVLLRALQYASTFGF 175 (425)
T ss_pred EE-cC--C--------Cc----------------cCHHHHHHHHhCCEEEEE----cCCcccCCHHHHHHHHHHHHhcCC
Confidence 10 00 0 00 111112222222211122 112223566778889999999999
Q ss_pred ceeEeccCChhhhHHH------hhhcCCCCc-------hH-HHHhhhCCCCCCeeeeeeccCC-hhHHHHHHhcC--CeE
Q 011766 250 GIHMHVAEIPYENQVV------MDTRKVDHG-------TV-TFLDKIEFLQNNLLSAHTVWVN-HTEIGLLSRAG--VKV 312 (478)
Q Consensus 250 ~v~~H~~~~~~~~~~~------~~~~~~~~~-------~~-~~l~~~~~~~~~~~i~h~~~~~-~~~~~~~~~~~--~~~ 312 (478)
++.+|+.+........ ......... .+ ..+......+.+..+.|.+.-. -+.+..+++.| +.+
T Consensus 176 ~v~~H~E~~~~~~~~~~~~g~~~~~~~~~~~P~~aE~~av~r~~~la~~~~~~~hi~HvSs~~~~~~i~~ak~~g~~vt~ 255 (425)
T PRK07627 176 TVWLRPLDAFLGRGGVAASGAVASRLGLSGVPVAAETIALHTIFELMRVTGARVHLARLSSAAGVALVRAAKAEGLPVTC 255 (425)
T ss_pred EEEEecCChhhhhCCCcCCCHhHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHHHHHHHHHHHCCCCeEE
Confidence 9999997643211000 000000000 01 1222233445667777766521 23445555566 556
Q ss_pred EECccchhhc-----------cCCC---------cHHHHHHCCCcEEEcCCCCCCCCC---cCHHH--------HHHHHH
Q 011766 313 SHCPASAMRM-----------LGFA---------PIKEMLHADICVSLGTDGAPSNNR---MSIVD--------EMYLAS 361 (478)
Q Consensus 313 ~~~p~~~~~~-----------~~~~---------~~~~~~~~gv~v~~gsD~~~~~~~---~~~~~--------~~~~~~ 361 (478)
.+||.+.... .-.+ .+.+.+..|...+++|||.|+... .+++. +.....
T Consensus 256 Ev~ph~L~l~~~~~~~~~~~~k~~PPLR~~~d~~~L~~~l~~G~id~i~SDHaP~~~~~k~~~~~~~~~G~~g~e~~~pl 335 (425)
T PRK07627 256 DVGVNHVHLIDVDIGYFDSQFRLDPPLRSQRDREAIRAALADGTIDAICSDHTPVDDDEKLLPFAEATPGATGLELLLPL 335 (425)
T ss_pred EeccchheEeHhHHhccCCceEEeCCCCCHHHHHHHHHHHhcCCCcEEEcCCCCCCHHHccCCHhhCCCCceeHHHHHHH
Confidence 7899853211 0112 345778889999999999765311 01111 111111
Q ss_pred HHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCc--------CChhhh
Q 011766 362 LINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPV--------HDRITS 433 (478)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~--------~d~~~~ 433 (478)
+.. .....+++++++++++|.|||+++|+ ++|+|++|+.|||+++|.+..+..+. .+|+..
T Consensus 336 ~~~---------~~~~~~i~~~~~l~~~t~~pA~~lg~--~~G~l~~G~~ADlvv~d~~~~~~v~~~~~~s~~~~sp~~g 404 (425)
T PRK07627 336 TLK---------WADEAKVPLARALARITSAPARVLGL--PAGRLAEGAPADLCVFDPDAHWRVEPRALKSQGKNTPFLG 404 (425)
T ss_pred HHH---------HHHhCCCCHHHHHHHHHHHHHHHhCC--CCCcccCCCcCCEEEECCCCcEEEChhhccccCCCCCCcC
Confidence 111 01234699999999999999999999 46999999999999999984222221 223322
Q ss_pred hhhccCCCCeeEEEEccEEEEEC
Q 011766 434 LVYCMRTENVVSVMCNGQWVMKN 456 (478)
Q Consensus 434 ~~~~~~~~~v~~v~v~G~~v~~~ 456 (478)
.. -..+|.+||++|++||++
T Consensus 405 ~~---~~g~v~~t~v~G~~v~~~ 424 (425)
T PRK07627 405 YE---LPGRVRATLVAGQVAFER 424 (425)
T ss_pred CE---eeeEEEEEEECCEEEeec
Confidence 21 125799999999999976
|
|
| >PRK02382 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=248.70 Aligned_cols=377 Identities=18% Similarity=0.198 Sum_probs=216.6
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccc
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~ 97 (478)
|.+++|+|++|++.. . +.+++|+|+||+|++|++.... ..+.++||++|++|+|||||+|+|+....
T Consensus 1 ~~dl~i~n~~v~~~~---~-~~~~~v~I~dg~I~~i~~~~~~-----~~~~~~id~~g~~v~PG~ID~H~H~~~~g---- 67 (443)
T PRK02382 1 MRDALLKDGRVYYNN---S-LQPRDVRIDGGKITAVGKDLDG-----SSSEEVIDARGMLLLPGGIDVHVHFREPG---- 67 (443)
T ss_pred CceEEEECCEEEeCC---C-ceEEEEEEECCEEEEecCCCCC-----CCCCeEEECCCCEEcCCEeeeeeeccCCC----
Confidence 357899999999632 2 3468999999999999864221 12458999999999999999999983210
Q ss_pred cCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCH-----HHHHHHHHHhCCeEEEeccccc
Q 011766 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHV-----SEMAKAVELLGLRACLVQSTMD 172 (478)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~ 172 (478)
....+ ......+.++.+||||+++++.... ..+........-.........
T Consensus 68 --------------------~~~~e---~~~~~~~aa~~gGvTtv~~~~~t~p~~~~~~~~~~~~~~a~~~s~v~~~~~- 123 (443)
T PRK02382 68 --------------------YTHKE---TWYTGSRSAAAGGVTTVVDQPNTDPPTVDGESFDEKAELAARKSIVDFGIN- 123 (443)
T ss_pred --------------------CCchh---hHHHHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCcCceEEEEEE-
Confidence 11111 1123345689999999999764321 122222222222111111111
Q ss_pred CCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCe-EEEEec-cccccCCHHHHHHHHHHHHHcCCc
Q 011766 173 CGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRI-RIWFGI-RQIMNATDRLLLETRDMAREFKTG 250 (478)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~l~~~~~~a~~~~~~ 250 (478)
.+ . . .... +...+.+. +...+ +++... ......+.+.+.++++.+++.|.+
T Consensus 124 ~~--~--------~-~~~~------------~l~~l~~~----gv~~~gkv~~~~~~~~~~~~~~~l~~~~~~a~~~g~~ 176 (443)
T PRK02382 124 GG--V--------T-GNWD------------PLESLWER----GVFALGEIFMADSTGGMGIDEELFEEALAEAARLGVL 176 (443)
T ss_pred ee--e--------c-cchh------------hHHHHHhc----CccceeEEEEEecCCCcccCHHHHHHHHHHHHhcCCe
Confidence 00 0 0 0011 22222221 22212 222211 122345677899999999999999
Q ss_pred eeEeccCChhhhHHHhhhc--------CCC-Cch------HHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEEC
Q 011766 251 IHMHVAEIPYENQVVMDTR--------KVD-HGT------VTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHC 315 (478)
Q Consensus 251 v~~H~~~~~~~~~~~~~~~--------~~~-~~~------~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~ 315 (478)
+.+|+.............. ... ... ...+......+.+..+.|.+ +.+.++.+++..+.+.+|
T Consensus 177 v~~H~e~~~~~~~~~~~~~g~~~~~~~~~~~p~~~E~~av~~~~~la~~~g~~~hi~h~s--s~~~~~~i~~~~vt~ev~ 254 (443)
T PRK02382 177 ATVHAEDEDLFDELAKLLKGDADADAWSAYRPAAAEAAAVERALEVASETGARIHIAHIS--TPEGVDAARREGITCEVT 254 (443)
T ss_pred EEEecCCHHHHHHhhHhhcCCCCHhhCCCcCCHHHHHHHHHHHHHHHHHhCCCEEEEECC--CHHHHHHHHHCCcEEEEc
Confidence 9999976433211110000 000 000 11222233344555566655 356677777766788899
Q ss_pred ccchhhc-----------cCCCcHH---------HHHHCCCcEEEcCCCCCCCCCc---CHH--------HHHHHHHHHh
Q 011766 316 PASAMRM-----------LGFAPIK---------EMLHADICVSLGTDGAPSNNRM---SIV--------DEMYLASLIN 364 (478)
Q Consensus 316 p~~~~~~-----------~~~~~~~---------~~~~~gv~v~~gsD~~~~~~~~---~~~--------~~~~~~~~~~ 364 (478)
|.+.... .-.+|++ +.++.|...+++|||.|+.... +++ -+.....+..
T Consensus 255 ph~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~g~i~~i~sDh~P~~~~~K~~~~~~~~~G~~g~e~~~~~~~~ 334 (443)
T PRK02382 255 PHHLFLSRRDWERLGTFGKMNPPLRSEKRREALWERLNDGTIDVVASDHAPHTREEKDADIWDAPSGVPGVETMLPLLLA 334 (443)
T ss_pred hhhhhcCHHHHhccCceEEEcCCCCChHHHHHHHHHHhCCCCCEEEcCCCCCCHHHhcCChhhCCCCcccHHHHHHHHHH
Confidence 9843210 1123333 4567799999999998863100 011 0011111111
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhh----hhhccCC
Q 011766 365 KGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITS----LVYCMRT 440 (478)
Q Consensus 365 ~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~----~~~~~~~ 440 (478)
. ..+.+++++++++++|.|||+++|+. .+|+|++|++|||+|+|.+..+..+.++..+. .......
T Consensus 335 ~---------~~~~~~~l~~~~~~~t~~pA~~~g~~-~~G~l~~G~~AD~vi~d~~~~~~~~~~~~~s~~~~sp~~g~~~ 404 (443)
T PRK02382 335 A---------VRKNRLPLERVRDVTAANPARIFGLD-GKGRIAEGYDADLVLVDPDAAREIRGDDLHSKAGWTPFEGMEG 404 (443)
T ss_pred H---------HHcCCCCHHHHHHHHhHHHHHHcCCC-CCCccCCCCcCCEEEEcCCCcEEEcHHHhcccCCCCCcCCCEe
Confidence 0 01336999999999999999999995 67999999999999999874432221111110 0011112
Q ss_pred CCeeEEEEccEEEEECCeeeccc-HHHHHHH
Q 011766 441 ENVVSVMCNGQWVMKNKKILLLM-RGRLFQL 470 (478)
Q Consensus 441 ~~v~~v~v~G~~v~~~g~~~~~~-~~~~~~~ 470 (478)
..+.+||++|+++|++|+++... .|+++++
T Consensus 405 ~~v~~tiv~G~~v~~~~~~~~~~~~G~~~~~ 435 (443)
T PRK02382 405 VFPELTMVRGTVVWDGDDINAKRGRGEFLRG 435 (443)
T ss_pred ceEEEEEECCEEEEECCEEecCCCCceEeCC
Confidence 36889999999999999987654 5777643
|
|
| >PRK13985 ureB urease subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=243.23 Aligned_cols=335 Identities=18% Similarity=0.175 Sum_probs=191.7
Q ss_pred CccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhh-------hhccCCCeEEeCCCCEEeecccccccc
Q 011766 16 GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQ-------QFSQMADQIIDLQSQILLPGFVNTHVH 88 (478)
Q Consensus 16 ~~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~-------~~~~~~~~viD~~G~~v~PGfID~H~H 88 (478)
....+++|+|++|++. . . +..++|.|+||+|++|++...... .+...++++||++|++|+|||||+|+|
T Consensus 62 ~~~~DlVI~Na~IiD~--~-g-i~kaDI~IkdGrIaaIG~~gn~~~~~~v~~~~~ig~~tevIDa~G~iV~PG~ID~HvH 137 (568)
T PRK13985 62 KEELDLIITNALIIDY--T-G-IYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIH 137 (568)
T ss_pred CCcCCEEEECeEEECC--C-C-cEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEECCCCEEEeCEEEeeCC
Confidence 3467899999999963 2 2 346799999999999997532100 001235689999999999999999999
Q ss_pred cchhhhccccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc-----C-------H---HHH
Q 011766 89 TSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-----H-------V---SEM 153 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~-----~-------~---~~~ 153 (478)
+.. +. .+ ..++++||||+++++.. . . ..+
T Consensus 138 ~~~----------------------------P~-~~-------~~AlagGVTTvI~~G~gP~~~T~p~~~tpg~~~i~~m 181 (568)
T PRK13985 138 FIS----------------------------PQ-QI-------PTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWM 181 (568)
T ss_pred CCC----------------------------cc-HH-------HHHhcCceEEEEccCcCCCCCCCCcCCCCcHHHHHHH
Confidence 821 00 01 24799999999984211 1 1 122
Q ss_pred HHHHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCC
Q 011766 154 AKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNAT 233 (478)
Q Consensus 154 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (478)
.+..+...+... ++. .+ + .. .. +.+.+....+... +..+..+..+
T Consensus 182 l~~a~~~pvn~g----f~g--kG----~-----~~---------------~l-~eL~el~~aGA~G----fK~~ed~g~t 226 (568)
T PRK13985 182 LRAAEEYSMNLG----FLG--KG----N-----SS---------------ND-ASLADQIEAGAIG----FKIHEDWGTT 226 (568)
T ss_pred HHHhhccCccEE----Eec--CC----c-----cC---------------CH-HHHHHHHHcCCEE----EEECCccCCC
Confidence 222222211110 000 00 0 00 11 1122322333222 2233444578
Q ss_pred HHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHH-HhhhCCCCCCeeeeeeccCC----hhHHHHHHhc
Q 011766 234 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTF-LDKIEFLQNNLLSAHTVWVN----HTEIGLLSRA 308 (478)
Q Consensus 234 ~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~i~h~~~~~----~~~~~~~~~~ 308 (478)
+..+.++++.+.++++++.+|+....... +++. +.+. .+....+.|..... ++.++.+...
T Consensus 227 ~~~I~~aL~vA~~~dv~V~iHtdtlne~g------------~~E~t~aa~--~gr~iH~~H~egaggghapdi~~~~~~~ 292 (568)
T PRK13985 227 PSAINHALDVADKYDVQVAIHTDTLNEAG------------CVEDTMAAI--AGRTMHTFHTEGAGGGHAPDIIKVAGEH 292 (568)
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCCCch------------hhHHHHHHh--cCCeEEEEeccCCCccchhhHHHHcCCC
Confidence 88999999999999999999997543211 1111 1111 11112223322211 3333333333
Q ss_pred CCe-EEECcc--------------------chh-------------hccCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHH
Q 011766 309 GVK-VSHCPA--------------------SAM-------------RMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIV 354 (478)
Q Consensus 309 ~~~-~~~~p~--------------------~~~-------------~~~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~ 354 (478)
++- -++.|+ .+. |...+..=.-|.+.|+...++||+...+.-....
T Consensus 293 nvlp~stnpt~p~t~nt~~e~~dm~m~~h~l~~~~~ed~afa~srir~~tiaaed~l~d~G~~s~~~SDs~~mgr~ge~~ 372 (568)
T PRK13985 293 NILPASTNPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSSDSQAMGRVGEVI 372 (568)
T ss_pred CcccCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhccccccccCchhhhCCcEEEEeccchhhCccccee
Confidence 321 122222 110 1111222235778999999999986443211111
Q ss_pred HH-HHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhh
Q 011766 355 DE-MYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITS 433 (478)
Q Consensus 355 ~~-~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~ 433 (478)
.. .+.+......+..+.......-.++.++||+++|.|||+++|+++++|+|++||.||||||+.+++.
T Consensus 373 ~r~~q~a~k~~~~~g~l~~~~~~~dnl~v~eAL~~yTin~A~A~G~e~~vGSLe~GK~ADlVv~d~d~f~---------- 442 (568)
T PRK13985 373 TRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFFG---------- 442 (568)
T ss_pred eehHHHHHHHHHhcCCCCCccccccccCHHHHHHHHhHHHHHHcCcccCceeECCCCccCEEEEcCccCC----------
Confidence 11 1122222211111110001123589999999999999999999999999999999999999998553
Q ss_pred hhhccCCCCeeEEEEccEEEEEC
Q 011766 434 LVYCMRTENVVSVMCNGQWVMKN 456 (478)
Q Consensus 434 ~~~~~~~~~v~~v~v~G~~v~~~ 456 (478)
..+..||++|+++|..
T Consensus 443 -------~~pe~vi~~G~iv~~~ 458 (568)
T PRK13985 443 -------VKPNMIIKGGFIALSQ 458 (568)
T ss_pred -------CChheEEECCEEEEcc
Confidence 3677999999999985
|
|
| >COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-30 Score=233.05 Aligned_cols=346 Identities=21% Similarity=0.260 Sum_probs=213.4
Q ss_pred eEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCC
Q 011766 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (478)
Q Consensus 21 ~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~ 100 (478)
.+|+|++|+|+ ..++.++.|.|+||+|.+|.+ .+. | ...+++|.+|.+|+|||||.|+|.....
T Consensus 2 ~~~~~~~i~t~---~~~~~~~~v~i~dg~I~~i~~-~~~----p-~~~e~id~~G~~l~PGfID~hihG~gG~------- 65 (380)
T COG1820 2 YALKNGRIFTG---HGVLDGGAVVIEDGKIEAVVP-AEL----P-ADAEIIDLKGALLVPGFIDLHIHGGGGA------- 65 (380)
T ss_pred ceeeccEEEcC---cceEECcEEEEcCCEEEEEec-CcC----C-CcceeecCCCCEecccEEEEeecCcCcc-------
Confidence 47899999975 467888999999999999998 222 2 3679999999999999999999985421
Q ss_pred CCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCc-cCHHHHH-------HHHHHhCCeEEEeccccc
Q 011766 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-QHVSEMA-------KAVELLGLRACLVQSTMD 172 (478)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~-~~~~~~~-------~~~~~~g~~~~~~~~~~~ 172 (478)
+++ +.........-.+..++.|+|++...-- .....+. +.....+... ....-
T Consensus 66 -~~~---------------D~~~~~~l~~i~~~~~~~GtTsfLpT~iT~~~e~i~~al~~~~e~~~~~ga~i---lGiHL 126 (380)
T COG1820 66 -DFM---------------DAGSVETLETMAEAHLRHGTTSFLPTLITASLEKIKAALRAIREAIAKGGAQI---LGIHL 126 (380)
T ss_pred -ccc---------------CccCHHHHHHHHHHhhhcCeeeeeeecccCCHHHHHHHHHHHHHHHhccCCce---EEEEe
Confidence 111 1011222233445678999999887432 2222222 1222112111 12334
Q ss_pred CCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCcee
Q 011766 173 CGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIH 252 (478)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~ 252 (478)
.|+++++.....+.++.+. +...+.++.+....++.++.+. ..+...-+ .+++..+.+.|+.+.
T Consensus 127 EGP~ls~~kkGAh~~~~ir-----------~~~~~~~~~~~~~a~g~i~~vT-lAPE~~~~----~e~i~~l~~~giivs 190 (380)
T COG1820 127 EGPFLSPEKKGAHNPEYIR-----------PPDPEELEQLIAAADGLIKLVT-LAPELDGT----KELIRLLANAGIVVS 190 (380)
T ss_pred ecCccCHhhccCCCHHHhC-----------CCCHHHHHHHHhhccCceEEEE-ECCCCCCC----HHHHHHHHhCCeEEE
Confidence 5666665555544444443 2555666677666665554432 22221112 344455566676665
Q ss_pred E-eccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCC----------------eeeeeeccCChhHHHHHHhcC-CeEEE
Q 011766 253 M-HVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNN----------------LLSAHTVWVNHTEIGLLSRAG-VKVSH 314 (478)
Q Consensus 253 ~-H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------~~i~h~~~~~~~~~~~~~~~~-~~~~~ 314 (478)
+ |............+ .+. ....+.++.+..+..| .+|..+.|++|..++.+.+.. ..-.+
T Consensus 191 ~GHS~Atye~~~~a~~-~Ga-~~~THlfNaMs~l~hREPGvvGA~L~~~~~~~eiIaDG~HVhP~~~~ia~~~kg~~~i~ 268 (380)
T COG1820 191 IGHSNATYEQARAAFE-AGA-TFVTHLFNAMSGLHHREPGVVGAALDNPDVYAEIIADGVHVHPAAIRLALKAKGGDKIV 268 (380)
T ss_pred ecCccccHHHHHHHHH-hCc-cEEEeeccCCCCCCCCCCcccceeecCCCeEEEEEccCcccCHHHHHHHHhccCCceEE
Confidence 5 43332221111111 111 1122344444333322 278899999999999888875 44445
Q ss_pred CccchhhccCCCcHHHHH-------HCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHH
Q 011766 315 CPASAMRMLGFAPIKEML-------HADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLR 387 (478)
Q Consensus 315 ~p~~~~~~~~~~~~~~~~-------~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~ 387 (478)
+.+..++..+...-...+ ..| .+.-.|+...++.+.|.+.++...-. .+++++||++
T Consensus 269 LVTDam~a~G~~dg~y~lgg~~V~v~~g--~~~~~~GtLAGS~Ltm~~avrn~v~~--------------~~~~~~eAv~ 332 (380)
T COG1820 269 LVTDAMAAAGLPDGEYILGGQTVTVADG--ARRLEDGTLAGSTLTMDEAVRNLVEW--------------GGISLAEAVR 332 (380)
T ss_pred EEEccccccCCCCccEEECCEEEEEECC--EEECCCCceeeeeeeHHHHHHHHHHH--------------hCCCHHHHHH
Confidence 555566654443322221 122 33345665555667787777655432 2589999999
Q ss_pred HHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEE
Q 011766 388 MATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMK 455 (478)
Q Consensus 388 ~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~ 455 (478)
|+|.+||+.+|+++++|+|++||+||||+||.+ .++..||++|++++.
T Consensus 333 maS~~PA~~lgl~~~~G~i~~G~~Adlvvld~d--------------------~~v~~T~i~G~~~~~ 380 (380)
T COG1820 333 MASLNPAKALGLDDRLGSIKPGKDADLVVLDDD--------------------LNVKATWINGEKVFN 380 (380)
T ss_pred HhhhhHHHHhCCcCcccccCCCcccCEEEECCC--------------------CcEEEEEECCEEeeC
Confidence 999999999999999999999999999999997 799999999999873
|
|
| >KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=232.35 Aligned_cols=390 Identities=15% Similarity=0.214 Sum_probs=237.2
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~ 96 (478)
.+.+++|+|++|++-|. .. ..||+++||.|.+|+++..+ +.+.++||+.|++|+||.||+|+|+-+..
T Consensus 12 ~s~rllikgg~vvN~d~--~~--~aDV~vedGiI~~vg~~l~i-----pgg~~~ida~g~~ViPGgID~Hthlq~p~--- 79 (522)
T KOG2584|consen 12 ASNRLLIKGGRVVNDDQ--SF--KADVYVEDGIIKEVGENLII-----PGGVKVIDATGKMVIPGGIDPHTHLQMPF--- 79 (522)
T ss_pred cccceeeeCCEEEccCC--ce--eeeEEeccCEEEEecccEEc-----CCCceEEecCCcEEecCccCccceecccc---
Confidence 45679999999997442 33 35999999999999998654 24779999999999999999999993321
Q ss_pred ccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc----CHHHHH-HHHHHhCCeEEEecccc
Q 011766 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ----HVSEMA-KAVELLGLRACLVQSTM 171 (478)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~----~~~~~~-~~~~~~g~~~~~~~~~~ 171 (478)
...-+.++ ..++.++++.+|+|.+.|+.-. +..+.+ +..+.+..+.++.+.+.
T Consensus 80 ------------------~G~ts~Dd----F~~GTkAAlaGGtTmiID~vlp~~~~slv~afe~wr~~Ad~k~cCDyglh 137 (522)
T KOG2584|consen 80 ------------------MGMTSVDD----FFQGTKAALAGGTTMIIDFVLPDKGTSLVEAFEKWREWADPKVCCDYGLH 137 (522)
T ss_pred ------------------CCccchhh----hhcccHHHhcCCceEEEEEecCCCCchHHHHHHHHHhhcCCceeeeeeee
Confidence 11122223 2344567899999999996422 222222 22233334444333221
Q ss_pred cCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCce
Q 011766 172 DCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGI 251 (478)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v 251 (478)
-. + ..|. ..+. +..+.+. .+.+...+++..++...+.+.++.+.+.+..+++.|...
T Consensus 138 v~---I-t~W~-----~~v~------------eem~~l~--~ekGvnsF~~fmayk~~~~v~d~~lye~l~~~~~lgala 194 (522)
T KOG2584|consen 138 VG---I-TWWS-----PSVK------------EEMEILV--KEKGVNSFKFFMAYKDLYMVRDSELYEALKVCAELGALA 194 (522)
T ss_pred Ee---e-eecC-----cchH------------HHHHHHh--hhcCcceEEeeeeeccccccCHHHHHHHHHHHhhcchhh
Confidence 10 1 1121 1122 3333333 345667788888999999999999999999999999999
Q ss_pred eEeccCChhhhHHHhh--hcCCC----C---chH--------HHHhhhCCCCCCeeeeeeccCCh-hHHHHHHhcCCeEE
Q 011766 252 HMHVAEIPYENQVVMD--TRKVD----H---GTV--------TFLDKIEFLQNNLLSAHTVWVNH-TEIGLLSRAGVKVS 313 (478)
Q Consensus 252 ~~H~~~~~~~~~~~~~--~~~~~----~---~~~--------~~l~~~~~~~~~~~i~h~~~~~~-~~~~~~~~~~~~~~ 313 (478)
.+|+.......+.... ..++. + ++. .++.-.........+.|..+.+. +.+.++++.|. ++
T Consensus 195 ~vHAEngd~iae~q~~~l~~gitgPEgh~lSRPee~EaEA~~rai~ia~~~ncPlyvvhVmsksaa~~Ia~aRk~g~-~v 273 (522)
T KOG2584|consen 195 MVHAENGDAIAEGQQRLLELGITGPEGHELSRPEELEAEATNRAITIARQANCPLYVVHVMSKSAADAIALARKKGR-VV 273 (522)
T ss_pred eehhhcchhhhhhhhHHHHcCCcCcccccccCchhhhHHHHHHHHHHHHhcCCCcceEEEeehhHHHHHHHHHhcCc-ee
Confidence 9999765433322211 11111 0 111 12222333444566777776654 45666666553 33
Q ss_pred ECccchh------------------hccCCCc----------HHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHh-
Q 011766 314 HCPASAM------------------RMLGFAP----------IKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLIN- 364 (478)
Q Consensus 314 ~~p~~~~------------------~~~~~~~----------~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~- 364 (478)
..+.... +....+| +-.++..|..-..|||+++.+... ..+..-.+..
T Consensus 274 ~gepita~l~~dg~hy~~~~w~~Aa~~v~sPPlr~d~~t~~~L~~lLa~g~L~~tgSdhctf~~~q---KalgKddFt~i 350 (522)
T KOG2584|consen 274 FGEPITASLGTDGSHYWSKDWDHAAAFVTSPPLRPDPTTPDGLMDLLAEGDLQLTGSDHCTFTTEQ---KALGKDDFTKI 350 (522)
T ss_pred ecccchhhhcccchhhccCChhhcceeeeCCCCCCCCCCHHHHHHHHhcCccceeecCCCCCCHHH---HhhccCccccC
Confidence 3332110 0001122 346789999999999998763111 0000000000
Q ss_pred -cc------ccc--ccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhh
Q 011766 365 -KG------REV--FANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLV 435 (478)
Q Consensus 365 -~~------~~~--~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~ 435 (478)
++ +.. +..+ ...+.|++.+.+...++|+|+++++.+++|+|++|++|||||||++.......+..++...
T Consensus 351 p~GvnGvedrMsviwekg-v~~G~md~~~fVavtstnaAkifnlYprKGrIavGsDADiVIwdp~at~tIS~~th~~~~d 429 (522)
T KOG2584|consen 351 PNGVNGVEDRMSVIWEKG-VHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPNATKTISAKTHHSAND 429 (522)
T ss_pred CCccccccccceeeeehh-cccCccCcccEEEEecccchhheeccCcCceecccCCCcEEEECCCcceEecccccccccc
Confidence 00 000 0001 1334578899999999999999999999999999999999999998654444333333221
Q ss_pred hccC-----CCCeeEEEEccEEEEECCeeec-ccHHHHH
Q 011766 436 YCMR-----TENVVSVMCNGQWVMKNKKILL-LMRGRLF 468 (478)
Q Consensus 436 ~~~~-----~~~v~~v~v~G~~v~~~g~~~~-~~~~~~~ 468 (478)
+.+- ...+..||.+|++||+||++.- ...|+++
T Consensus 430 ~NifEGm~~~G~plvtIsrGriv~eng~~~v~~g~G~fi 468 (522)
T KOG2584|consen 430 FNIFEGMTVHGVPLVTISRGRVVYENGNLVVTEGSGRFI 468 (522)
T ss_pred ceeecCcEecceeEEEEeCCeEEEecCcEEEecCCCcee
Confidence 1111 1458899999999999999864 3355443
|
|
| >TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-29 Score=237.34 Aligned_cols=167 Identities=20% Similarity=0.225 Sum_probs=119.8
Q ss_pred CHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeE
Q 011766 233 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKV 312 (478)
Q Consensus 233 ~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~ 312 (478)
..+.+.+++++|++.|+++..|..+........ ...+. ..+.| .++.+..+.+.+.|+.+
T Consensus 207 ~~e~i~~~v~~A~~~G~~v~sH~~~~~e~i~~a--------------~~~Gv----~~~E~--~~t~e~a~~~~~~G~~v 266 (376)
T TIGR02318 207 GLANRSEIAALARARGIPLASHDDDTPEHVAEA--------------HDLGV----TISEF--PTTLEAAKEARSLGMQI 266 (376)
T ss_pred cHHHHHHHHHHHHHCCCeEEEecCCCHHHHHHH--------------HHCCC----Chhcc--CCCHHHHHHHHHcCCeE
Confidence 467899999999999999999996544322211 11121 11233 36788899999999998
Q ss_pred EECccchhhc---cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHH
Q 011766 313 SHCPASAMRM---LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMA 389 (478)
Q Consensus 313 ~~~p~~~~~~---~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~ 389 (478)
..+.....+. .+..++..+++.|+.++++||+.+. .++..+.... . ...+++++++++++
T Consensus 267 ~~~~p~~~r~~~~~~~~~l~~~~~~G~~~~l~SD~~p~----~~l~~~~~~~-~------------~~~gl~~~~al~~~ 329 (376)
T TIGR02318 267 LMGAPNIVRGGSHSGNLSARELAHEGLLDVLASDYVPA----SLLLAAFQLA-D------------DVEGIPLPQAVKMV 329 (376)
T ss_pred EECCccccccccccchHHHHHHHHCCCcEEEEcCCCcH----HHHHHHHHHH-H------------hhcCCCHHHHHHHH
Confidence 8775422222 2356788899999999999999553 2222221111 0 11258999999999
Q ss_pred hHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEE
Q 011766 390 TINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVM 454 (478)
Q Consensus 390 T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~ 454 (478)
|.|||+.+|++ ++|+|++|++|||+++|... ....+..||++|++||
T Consensus 330 T~npA~~lgl~-~~G~I~~G~~ADlvvvd~~~-----------------~~~~v~~v~~~G~~v~ 376 (376)
T TIGR02318 330 TKNPARAVGLS-DRGSIAPGKRADLVRVHRVD-----------------GVPRIRAVWRAGRRVY 376 (376)
T ss_pred hHHHHHHcCCC-CCCcCCCCCcccEEEEcCCC-----------------CCccceEEEECCEEeC
Confidence 99999999996 57999999999999999841 0147899999999886
|
This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs. |
| >cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-29 Score=247.68 Aligned_cols=176 Identities=23% Similarity=0.198 Sum_probs=134.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcC
Q 011766 230 MNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAG 309 (478)
Q Consensus 230 ~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~ 309 (478)
..++++.+.++++.+++.|+++++|+.+.......+ .. ........+..+.+..+.|+..+++++++++++.|
T Consensus 290 ~~~~~e~l~~~~~~a~~~g~~v~~Ha~gd~~i~~~l-~~------~~~~~~~~g~~~~r~~i~H~~~~~~~~~~~l~~~g 362 (479)
T cd01300 290 LLISPEELEELVRAADEAGLQVAIHAIGDRAVDTVL-DA------LEAALKDNPRADHRHRIEHAQLVSPDDIPRFAKLG 362 (479)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEecHHHHHHHH-HH------HHHHHHhcCCCCCCceeeecccCCHHHHHHHHHcC
Confidence 456899999999999999999999998754432211 10 11122233444667899999999999999999999
Q ss_pred CeEEECccchhh--------------ccCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCC
Q 011766 310 VKVSHCPASAMR--------------MLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTT 375 (478)
Q Consensus 310 ~~~~~~p~~~~~--------------~~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (478)
+.+++||.+... .....|++.+++.|+++++|||++.. +.+++..++.+.......... ...
T Consensus 363 v~~~~~P~~~~~~~~~~~~~~lg~~~~~~~~p~~~~~~~Gv~v~lGSD~~~~--~~~p~~~~~~av~~~~~~~~~--~~~ 438 (479)
T cd01300 363 VIASVQPNHLYSDGDAAEDRRLGEERAKRSYPFRSLLDAGVPVALGSDAPVA--PPDPLLGIWAAVTRKTPGGGV--LGN 438 (479)
T ss_pred CceEeCcccccCchHHHHHhcccHHHHhcCchHHHHHHCCCeeeccCCCCCC--CCCHHHHHHHHheeeCCCCCC--CCC
Confidence 999999986421 13578999999999999999999654 367787777665432111000 001
Q ss_pred CCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEE
Q 011766 376 DPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVV 416 (478)
Q Consensus 376 ~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv 416 (478)
.++++|++++++++|.|||+++|+++++|+|++||.|||||
T Consensus 439 ~~~~ls~~~al~~~T~~~A~~lg~e~~~GsLe~Gk~ADlvv 479 (479)
T cd01300 439 PEERLSLEEALRAYTIGAAYAIGEEDEKGSLEPGKLADFVV 479 (479)
T ss_pred ccccCCHHHHHHHHHHHHHHHhccccccccccCCcccceeC
Confidence 44679999999999999999999999999999999999986
|
YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling. |
| >cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=245.18 Aligned_cols=336 Identities=16% Similarity=0.128 Sum_probs=192.7
Q ss_pred CCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCCCCchHHhhhccccccCCCChHHHHHH
Q 011766 47 QDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYIS 126 (478)
Q Consensus 47 ~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (478)
||||++|++.... +.+.++||++|++|+|||||+|+|++...........+..+ ...+..+.+...+.+..
T Consensus 1 ~gkI~~i~~~~~~-----~~~~~vid~~g~~v~Pg~id~h~h~~~~~~~~~~~~~d~~e----~~~~~~p~~~~~d~~~~ 71 (359)
T cd01309 1 DGKIVAVGAEITT-----PADAEVIDAKGKHVTPGLIDAHSHLGLDEEGGVRETSDANE----ETDPVTPHVRAIDGINP 71 (359)
T ss_pred CCEEEEEcCCCCC-----CCCCeEEeCCCCEEcCcEEecccccCccccCCCcCcCCccc----cCCCCCceeEeecccCC
Confidence 7999999986542 13668999999999999999999998754432222111110 11222233344444444
Q ss_pred HHHHHHHHHhcCcceeecCCcc-CHHH------------HHHHHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCC
Q 011766 127 TLLCGIELIHSGVTCFAEAGGQ-HVSE------------MAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPD 193 (478)
Q Consensus 127 ~~~~~~~~l~~GvTtv~~~~~~-~~~~------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (478)
....+..++.+|||++...++. ..-. ..+.+........ ..+ +.............+.
T Consensus 72 ~~~~~~~a~~~GvT~~~v~p~~~~~~gg~~~~i~~~~~~~~~~~~~~~~~~~---~a~------g~~~~~~~~~~~~~p~ 142 (359)
T cd01309 72 DDEAFKRARAGGVTTVQVLPGSANLIGGQGVVIKTDGGTIEDMFIKAPAGLK---MAL------GENPKRVYGGKGKEPA 142 (359)
T ss_pred CCHhHHHHHhcCceEEEecCCCCCcccceEEEEECCCCCHHHhcccCCceeE---Eec------CCCCcccccccCCCcc
Confidence 4556667899999998654321 1000 0000000000000 000 0000000011111122
Q ss_pred CCccccccchhHHHHHHH---hcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcC
Q 011766 194 SSISFNFVSSSQKELYAK---HHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRK 270 (478)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~ 270 (478)
+++.... ..++.+.+ +.......-.. ...... ....++.+.+.++.. +++.+|+........
T Consensus 143 trmg~~~---~lr~~~~~a~~y~~~~~~~~~~-~~~~~~---~d~~l~~l~~~~~~~-~~v~vHa~~~~~i~~------- 207 (359)
T cd01309 143 TRMGVAA---LLRDAFIKAQEYGRKYDLGKNA-KKDPPE---RDLKLEALLPVLKGE-IPVRIHAHRADDILT------- 207 (359)
T ss_pred chHHHHH---HHHHHHHHHHHHHHHhhhhhhc-ccCCCC---CCccHHHHHHHHcCC-eeEEEEeCCHHHHHH-------
Confidence 2221110 11111111 00000000000 000001 112344555555432 889999986443211
Q ss_pred CCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc------cCCCcHHHHHHCC-CcEEEcCC
Q 011766 271 VDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM------LGFAPIKEMLHAD-ICVSLGTD 343 (478)
Q Consensus 271 ~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------~~~~~~~~~~~~g-v~v~~gsD 343 (478)
.+.+..+.+ -+..+.|+... ++.++++++.++.++++|..+.+. .+..+++.+.++| ++++++||
T Consensus 208 ----~l~~~~e~g---~~~~i~H~~~~-~~~~~~la~~gv~v~~~P~~~~~~~~~~~~~~~~~~~~l~~aGGv~valgsD 279 (359)
T cd01309 208 ----AIRIAKEFG---IKITIEHGAEG-YKLADELAKHGIPVIYGPTLTLPKKVEEVNDAIDTNAYLLKKGGVAFAISSD 279 (359)
T ss_pred ----HHHHHHHcC---CCEEEECchhH-HHHHHHHHHcCCCEEECccccccccHHHhhcchhhHHHHHHcCCceEEEECC
Confidence 222333333 35788999987 888999999999999999865432 3567888999998 99999999
Q ss_pred CCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCC
Q 011766 344 GAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWP 423 (478)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~ 423 (478)
++.. +...++.....+. ..+++.+++++++|.|||+++|+++++|+|++|+.|||||||.+++.
T Consensus 280 ~~~~-~~~~l~~~~~~a~---------------~~gl~~~~al~~~T~n~A~~lg~~~~~G~l~~G~~ADlvv~d~dpl~ 343 (359)
T cd01309 280 HPVL-NIRNLNLEAAKAV---------------KYGLSYEEALKAITINPAKILGIEDRVGSLEPGKDADLVVWNGDPLE 343 (359)
T ss_pred CCCc-cchhHHHHHHHHH---------------HcCCCHHHHHHHHHHHHHHHhCCCCCcccCCCCCccCEEEECCCccc
Confidence 8543 1112222221111 12599999999999999999999988999999999999999998654
Q ss_pred CCCcCChhhhhhhccCCCCeeEEEEccEEEE
Q 011766 424 MVPVHDRITSLVYCMRTENVVSVMCNGQWVM 454 (478)
Q Consensus 424 ~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~ 454 (478)
. ..++..||++|++||
T Consensus 344 ~---------------~~~v~~v~i~G~~v~ 359 (359)
T cd01309 344 P---------------TSKPEQVYIDGRLVY 359 (359)
T ss_pred c---------------cCcccEEEECCEEeC
Confidence 2 258999999999886
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >PRK13308 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-29 Score=238.49 Aligned_cols=325 Identities=19% Similarity=0.185 Sum_probs=191.9
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhh--h-----hhccCCCeEEeCCCCEEeeccccccccc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADIL--Q-----QFSQMADQIIDLQSQILLPGFVNTHVHT 89 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~--~-----~~~~~~~~viD~~G~~v~PGfID~H~H~ 89 (478)
..++++|+|++|+++. .. +..++|.|+||+|++|++....+ . .....++++||++|++|+|||||+|+|+
T Consensus 66 ~~~DlVItNa~IIDp~--~G-i~kaDIgIkDGrIaaIG~~~npd~~~gv~p~~~~g~~teVIDaeG~IVtPG~ID~HVH~ 142 (569)
T PRK13308 66 GALDFVLCNVTVIDPV--LG-IVKGDIGIRDGRIVGIGKAGNPDIMDGVDPRLVVGPGTDVRPAEGLIATPGAIDVHVHF 142 (569)
T ss_pred CcCCEEEECeEEEcCC--CC-eEEeEEEEECCEEEEecCCCCccccccccccccCCCCCeEEECCCCEEEeCEEEeeeCC
Confidence 4678999999999542 23 45679999999999999753110 0 0011356899999999999999999998
Q ss_pred chhhhccccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCc--------cCHH---HHHHHHH
Q 011766 90 SQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG--------QHVS---EMAKAVE 158 (478)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~--------~~~~---~~~~~~~ 158 (478)
.. + . ..+.++.+||||+++.+. .... .+.+..+
T Consensus 143 ~~----------------------------P-g-------~~~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~aa~ 186 (569)
T PRK13308 143 DS----------------------------A-Q-------LVDHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQAAE 186 (569)
T ss_pred CC----------------------------c-c-------HHHHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHHHh
Confidence 21 0 0 014589999999998421 1122 2222222
Q ss_pred HhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHH
Q 011766 159 LLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLL 238 (478)
Q Consensus 159 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 238 (478)
...+... .+.. +. .. .. +.+.++...+...++ .+..+..+++.+.
T Consensus 187 ~~pvN~g----~~gk--G~---------~s---------------~~-aeL~eli~aGA~GfK----i~ed~g~t~~~i~ 231 (569)
T PRK13308 187 AWPVNFG----FLGR--GN---------SS---------------KP-AALIEQVEAGACGLK----IHEDWGAMPAAID 231 (569)
T ss_pred cCCccEE----EEcC--Cc---------cc---------------CH-HHHHHHHHCCCCEEe----ecCCCCCCHHHHH
Confidence 2221111 1100 00 00 11 123333333333333 2233345788999
Q ss_pred HHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHH-HhhhCCCCCCeeeeeeccCC----hhHHHHHHhcCCe-E
Q 011766 239 ETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTF-LDKIEFLQNNLLSAHTVWVN----HTEIGLLSRAGVK-V 312 (478)
Q Consensus 239 ~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~i~h~~~~~----~~~~~~~~~~~~~-~ 312 (478)
++++.|+++++++.+|+....... +.+. +.+.. +....+.|..... ++.++.+...++- -
T Consensus 232 ~aL~~A~~~dv~VaiHadtlne~g------------~~E~t~~a~~--gr~iH~~H~egaggghapd~l~~~~~~n~lp~ 297 (569)
T PRK13308 232 TCLEVADEYDFQVQLHTDTLNESG------------FVEDTLAAIG--GRTIHMYHTEGAGGGHAPDIIRVVGEPHCLPS 297 (569)
T ss_pred HHHHHHHhcCCEEEEeCCCcCcch------------HHHHHHHHhc--CCeEEEEeccCCccCchhHHHHHhCCCCccCC
Confidence 999999999999999997632211 1111 11111 1222333333211 3444444443332 1
Q ss_pred EECccc--------------------h-------------hhccCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHH
Q 011766 313 SHCPAS--------------------A-------------MRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYL 359 (478)
Q Consensus 313 ~~~p~~--------------------~-------------~~~~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~ 359 (478)
++.|+. + .|...+..=.-|.+.|+...++||+...+ .+.+.+..
T Consensus 298 stnpt~p~t~nt~~e~~dm~m~~h~l~~~~~~d~afa~srir~~ti~ae~~l~d~g~~s~~~sds~~mg---r~~e~i~r 374 (569)
T PRK13308 298 STNPTNPYTVNTFDEHLDMTMVCHHLNPDVPEDVAFAESRIRAQTIAAEDVLHDIGAISMLGSDSQGMG---RIAEVIAR 374 (569)
T ss_pred CCCCCCCCccCchhhhcCeEEEecCCCCCCcchhhhhhhhccceeeccCchhhcCCcEEEEecchHHHh---HHHHHHHH
Confidence 222221 0 01111222235778999999999986542 34566666
Q ss_pred HHHHhcccccccCCCCCCCCCCHH-----------HHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcC
Q 011766 360 ASLINKGREVFANGTTDPAALPAE-----------TVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVH 428 (478)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~ls~~-----------~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~ 428 (478)
.++........ ...++.+ ..|+++|.|||+++|+++++|+|++||.||||+|+.+.+.
T Consensus 375 ~~q~a~~~~~~------~g~l~~~~~~~~dn~rv~r~L~~~T~npA~alGi~~~vGsLe~Gk~ADLVv~d~d~fg----- 443 (569)
T PRK13308 375 TWQLASKMKDQ------RGPLPEDRGTFADNARIKRYIAKYTINPAITFGIDDHIGSLEPGKLADIVLWRPAFFG----- 443 (569)
T ss_pred HHHHHHHHhhc------CCCCCcccccCCchhhhhHHHHHHhHHHHHHcCCCCCceeeCCCCcCCEEEECCcccC-----
Confidence 65544322111 1123333 3799999999999999988999999999999999987432
Q ss_pred ChhhhhhhccCCCCeeEEEEccEEEEE
Q 011766 429 DRITSLVYCMRTENVVSVMCNGQWVMK 455 (478)
Q Consensus 429 d~~~~~~~~~~~~~v~~v~v~G~~v~~ 455 (478)
.++..||++|+++|.
T Consensus 444 ------------v~p~~ti~~G~iv~~ 458 (569)
T PRK13308 444 ------------IKPELVIKGGFPAWA 458 (569)
T ss_pred ------------CCeeEEEECCEEEEe
Confidence 368899999999886
|
|
| >PLN02303 urease | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-29 Score=245.76 Aligned_cols=345 Identities=17% Similarity=0.165 Sum_probs=199.0
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhh--hh-----hhccCCCeEEeCCCCEEeeccccccccc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADI--LQ-----QFSQMADQIIDLQSQILLPGFVNTHVHT 89 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~--~~-----~~~~~~~~viD~~G~~v~PGfID~H~H~ 89 (478)
...+++|+|++|++.. . +..++|+|+||+|++|++.... .. .....++++||++|++|+|||||+|+|+
T Consensus 332 ~~~DlVItNa~IID~~---G-i~kaDI~IkDGrIvaIGkagnp~i~~gv~~~~~~g~~teVIDAeGlIVtPG~ID~HVHf 407 (837)
T PLN02303 332 DSLDTVITNAVIIDYT---G-IYKADIGIKDGLIVGIGKAGNPDVMDGVTSNMIVGVNTEVIAGEGMIVTAGGIDCHVHF 407 (837)
T ss_pred CcCCEEEeCeEEECCC---C-cEEeEEEEECCEEEEecCCCCcccccccccccccCCCCeEEECCCCEEEeCEEEeecCC
Confidence 3578999999999632 2 3567999999999999974311 00 0111246899999999999999999998
Q ss_pred chhhhccccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc------------CHHHHHHHH
Q 011766 90 SQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ------------HVSEMAKAV 157 (478)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~------------~~~~~~~~~ 157 (478)
.. + .. ..+++.+|+||++..|.. ....+....
T Consensus 408 ~~------------------------P----g~--------~~eaLasGVTTai~GGtgp~pnT~ptt~t~g~e~I~~~L 451 (837)
T PLN02303 408 IC------------------------P----QL--------ATEAIASGITTLVGGGTGPAHGTCATTCTPAPSHMKLML 451 (837)
T ss_pred CC------------------------C----cH--------HHHHHHHhHHHHHhcCCCCCCcccCcCCCCCHHHHHHHH
Confidence 21 0 00 123566677776664321 112222222
Q ss_pred HH---hCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCH
Q 011766 158 EL---LGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATD 234 (478)
Q Consensus 158 ~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (478)
+. ..+..... +.+ ... ...+ +.++...+... +..+..+..++
T Consensus 452 ~aa~~~pvn~Gf~------gkG---------~~s---------------~l~e-L~elieaGa~G----fK~h~d~gvTp 496 (837)
T PLN02303 452 QSTDDLPLNFGFT------GKG---------NTA---------------KPEG-LHEIIKAGAMG----LKLHEDWGTTP 496 (837)
T ss_pred HhcccCCCcEEEE------ccC---------ccc---------------CHHH-HHHHHHcCcEE----EEECCCCCCCH
Confidence 21 11111110 000 000 1111 22222222222 33344556789
Q ss_pred HHHHHHHHHHHHcCCceeEeccCChhh---hHHHhhhcCCCCchHHHHhhhCCCCCCe-----------eeeeecc-CCh
Q 011766 235 RLLLETRDMAREFKTGIHMHVAEIPYE---NQVVMDTRKVDHGTVTFLDKIEFLQNNL-----------LSAHTVW-VNH 299 (478)
Q Consensus 235 ~~l~~~~~~a~~~~~~v~~H~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------~i~h~~~-~~~ 299 (478)
+.+.++++.|+++++++++|+.. ..+ .+.....++ .+++++++..++++.+. ++.-.+. ..|
T Consensus 497 elL~raLe~AkelGVpVaIHAEd-LnE~G~vE~t~~a~G--~RpIh~~h~~Ga~gghapdi~~~~~~~nvlpsstnpt~p 573 (837)
T PLN02303 497 AAIDNCLDVAEEYDIQVTIHTDT-LNESGCVEHSIAAFK--GRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRP 573 (837)
T ss_pred HHHHHHHHHHHHcCCEEEEecCc-ccccchHHHHHHHHC--CChHHHHHhcCCCCCCCcHHHHhcCCCCccCCCCCCCCC
Confidence 99999999999999999999544 433 333444433 45788888888776421 0000000 001
Q ss_pred hHHHHHHhcCCeEEECccchh-------------hccCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHH-HHHHHHHhc
Q 011766 300 TEIGLLSRAGVKVSHCPASAM-------------RMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDE-MYLASLINK 365 (478)
Q Consensus 300 ~~~~~~~~~~~~~~~~p~~~~-------------~~~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~-~~~~~~~~~ 365 (478)
-....+.++--.+.+|...+. |...+..=.-|.+.|+..+++||+...+.-...... .+.+.....
T Consensus 574 ~t~nt~~e~~dm~m~~h~l~~~~~edvafa~srir~~tiaaed~l~d~G~~s~~~SDs~amgr~ge~i~r~~q~A~k~~~ 653 (837)
T PLN02303 574 YTKNTIDEHLDMLMVCHHLDKNIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVITRTWQTAHKMKS 653 (837)
T ss_pred CccCchhhhcCeEEeecCCCCCCcchhhhhhhhccchhhccchhhhccCCEEEEeccchhhCcccceeeehHHHHHHHHH
Confidence 112222222222333332211 112223334677899999999998644322111111 112222222
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeE
Q 011766 366 GREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVS 445 (478)
Q Consensus 366 ~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~ 445 (478)
.+..+.......-..++++||+++|.|||+++|+++.+|+|++||.||||||+++.+. ..+.+
T Consensus 654 ~~g~l~~~~~~~dn~rv~~aL~~~TiN~A~AlG~~~~vGSLe~GK~ADlVvw~~~~fg-----------------~~~~~ 716 (837)
T PLN02303 654 QRGALEPRGADNDNFRIKRYIAKYTINPAIAHGMSHFVGSVEVGKLADLVLWKPAFFG-----------------AKPEM 716 (837)
T ss_pred hcCCCCCccccccccCHHHHHHHHhHHHHHHCCcccCceeeCCCcccCEEEecccccC-----------------CCeeE
Confidence 2211111111123478899999999999999999999999999999999999987432 47899
Q ss_pred EEEccEEEEEC
Q 011766 446 VMCNGQWVMKN 456 (478)
Q Consensus 446 v~v~G~~v~~~ 456 (478)
||++|+++|..
T Consensus 717 vi~~G~ivy~~ 727 (837)
T PLN02303 717 VIKGGQIAWAQ 727 (837)
T ss_pred EEECCEEEEcc
Confidence 99999999986
|
|
| >COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-28 Score=232.65 Aligned_cols=366 Identities=18% Similarity=0.214 Sum_probs=211.5
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcccc
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~ 98 (478)
++++|+|++++++ + ....++|+|++|+|++|+..... . .+.++||++|++|+|||||.|+|+..
T Consensus 1 ~~~lIk~~~iv~~-~---~~~~~di~i~~g~I~~Ig~~l~~----~-~~~~iiD~~g~~v~PG~ID~HVH~re------- 64 (430)
T COG0044 1 MDLLIKNARVVDP-G---EDEVADILIKDGKIAAIGKNLEP----T-SGAEIIDAKGLLVLPGLVDLHVHFRE------- 64 (430)
T ss_pred CcEEEeccEEEcC-C---CceEecEEEECCEEEEeccCCCC----C-CCCcEEECCCCEEccCeeEEEEecCC-------
Confidence 4689999999964 2 23567999999999999986432 1 36789999999999999999999943
Q ss_pred CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCH-----HHHHHHHHHhCCeEEEecccccC
Q 011766 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHV-----SEMAKAVELLGLRACLVQSTMDC 173 (478)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~ 173 (478)
+.+... .......+.++++|+|++.+++...+ ...........-+..+......
T Consensus 65 -----------------pg~~~k---e~~~tgs~AAa~GG~Ttv~dmPnt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~- 123 (430)
T COG0044 65 -----------------PGFEHK---ETFETGSRAAAAGGVTTVVDMPNTKPPIDTAEALEDKLERAKGKSVVDYAFYG- 123 (430)
T ss_pred -----------------CCcchh---hhHHHHHHHHHcCCceEEEECCCCCCCCCCHHHHHHHHHHhhccceeEEEEEE-
Confidence 112211 22344667899999999999864332 2222222222111111110000
Q ss_pred CCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeE
Q 011766 174 GEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHM 253 (478)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~ 253 (478)
+...... ...++.+... ...++.+.. ........+.+.+..+.+.+.|..+.+
T Consensus 124 --~it~~~~---------------------~~~~~~~~~~---~~g~~~F~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (430)
T COG0044 124 --GLTKGNL---------------------GKLELTERGV---EAGFKGFMD-DSTGALDDDVLEEALEYAAELGALILV 176 (430)
T ss_pred --EEecccc---------------------chhhhhhhhh---ccceEEEec-CCcCcCCHHHHHHHHHHHHhcCCeEEE
Confidence 0000000 1111122111 111222222 222345778899999999999999999
Q ss_pred eccCChhhhHHHh--hhc----CCCCc-h------H-HHHhhhCCCCCCeeeeeeccCC-hhHHHHHHhcC--CeEEECc
Q 011766 254 HVAEIPYENQVVM--DTR----KVDHG-T------V-TFLDKIEFLQNNLLSAHTVWVN-HTEIGLLSRAG--VKVSHCP 316 (478)
Q Consensus 254 H~~~~~~~~~~~~--~~~----~~~~~-~------~-~~l~~~~~~~~~~~i~h~~~~~-~~~~~~~~~~~--~~~~~~p 316 (478)
|+.+......... ... ..... . + ..+......+.+..+.|.+.-. -+.+..++..| +.+.+||
T Consensus 177 H~Ed~~~~~~~~~~~g~~~~~~~~~~~p~~aE~~~iar~~~la~~~g~~vhi~HiSt~~sv~li~~ak~~g~~vt~Evtp 256 (430)
T COG0044 177 HAEDDDLIAEGVMNEGLRAPELGLAGRPPIAEASAIARDLELARATGARVHICHISTKESVELIRAAKAEGIRVTAEVTP 256 (430)
T ss_pred ecCChhHhhhHHHhcCccchhhccCCCChHHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHHHHHHhhcCCceEEeecc
Confidence 9977643221111 000 00011 1 1 1122222333556566655321 12334444443 3467888
Q ss_pred cchhhc-----------cCCCc---------HHHHHHCCCcEEEcCCCCCCCCCcC---HH--------HHHHHHHHHhc
Q 011766 317 ASAMRM-----------LGFAP---------IKEMLHADICVSLGTDGAPSNNRMS---IV--------DEMYLASLINK 365 (478)
Q Consensus 317 ~~~~~~-----------~~~~~---------~~~~~~~gv~v~~gsD~~~~~~~~~---~~--------~~~~~~~~~~~ 365 (478)
.+.... .-.+| +.+.+..|...+++|||.|+..... +. -+..+..+..
T Consensus 257 hHL~l~~~~~~~~~~~~k~nPPLR~~~dr~aL~~~l~~G~ID~iasDHaPht~eeK~~~f~~ap~G~~glE~~lpl~l~- 335 (430)
T COG0044 257 HHLLLDEEDIEDLGTLAKVNPPLRDEEDREALWEALKDGVIDVIASDHAPHTLEEKRLPFEEAPSGIPGLETALPLLLT- 335 (430)
T ss_pred hheEccHhHhhccCcceEECCCCCCHHHHHHHHHHHhCCCCcEEEcCCCCCCHHHhccchhhCCCCCccHHHHHHHHHH-
Confidence 753210 11233 3467788999999999988742111 00 0111111111
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCc--------CChhhhhhhc
Q 011766 366 GREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPV--------HDRITSLVYC 437 (478)
Q Consensus 366 ~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~--------~d~~~~~~~~ 437 (478)
......+|+++.++++|.|||+++|+.. +|.|++|++|||+|+|.+..+..+. ..|+...
T Consensus 336 --------lv~~g~lsl~~~v~~~S~nPA~ifgl~~-~g~i~~G~~ADl~lvD~~~~~~i~~~~~~sk~~~sPf~G~--- 403 (430)
T COG0044 336 --------LVKKGRLSLERLVELLSTNPARIFGLPP-KGAIEEGADADLVLVDPDEEWTIRAEELYSKAKNSPFEGF--- 403 (430)
T ss_pred --------HHHcCCcCHHHHHHHHhhCHHHHhCCCC-CCcccCCCccCEEEEcCCCCeEEchhhhccccCCCCcCCC---
Confidence 0123359999999999999999999966 7889999999999999984222221 1233322
Q ss_pred cCCCCeeEEEEccEEEEECCeeec
Q 011766 438 MRTENVVSVMCNGQWVMKNKKILL 461 (478)
Q Consensus 438 ~~~~~v~~v~v~G~~v~~~g~~~~ 461 (478)
.-..+|.+||++|+++|.++....
T Consensus 404 ~~~g~v~~Ti~rG~~v~~~~~~~~ 427 (430)
T COG0044 404 ELKGRVVATILRGKVVYEDGEVIA 427 (430)
T ss_pred EEeeeEEEEEECCEEEEECCcEec
Confidence 123689999999999999997654
|
|
| >PRK08044 allantoinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-29 Score=243.76 Aligned_cols=376 Identities=16% Similarity=0.188 Sum_probs=210.4
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccc
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~ 97 (478)
+++++|+|++|++.++ . ..++|+|+||+|++|++... .+.++||++|++|+|||||+|+|+....
T Consensus 2 ~~~~~i~n~~vi~~~~---~-~~~~i~I~dg~I~~i~~~~~-------~~~~~iD~~G~~v~Pg~iD~h~h~~~~~---- 66 (449)
T PRK08044 2 SFDLIIKNGTVILENE---A-RVVDIAVKGGKIAAIGQDLG-------DAKEVMDASGLVVSPGMVDAHTHISEPG---- 66 (449)
T ss_pred CceEEEECcEEEcCCC---C-EEEEEEEECCEEEEecCCCC-------CCCeEEECCCCEEcCCeeccccccCCCC----
Confidence 3578999999997432 2 34699999999999986421 2458999999999999999999983210
Q ss_pred cCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCc-c-----CHHHHHHHHHHhCCeEEEecccc
Q 011766 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-Q-----HVSEMAKAVELLGLRACLVQSTM 171 (478)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~-~-----~~~~~~~~~~~~g~~~~~~~~~~ 171 (478)
... ..........++++||||+.+++. . ....+....+...-+..+.....
T Consensus 67 --------------------~~~---~e~~~~~~~aa~~gGvTtv~d~~~~~~p~~~~~~~~~~~~~~~~~~s~vd~~~~ 123 (449)
T PRK08044 67 --------------------RSH---WEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQL 123 (449)
T ss_pred --------------------ccc---cccHHHHHHHHHhCCceEEECCccCCCCCCCcHHHHHHHHHHhccCCeeeEEEE
Confidence 000 112233456789999999999862 1 12222222222211111111100
Q ss_pred cCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccc-------cccCCHHHHHHHHHHH
Q 011766 172 DCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQ-------IMNATDRLLLETRDMA 244 (478)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~a 244 (478)
. +.. ..... +...+. ..+...++....+.. ........+.+.++.+
T Consensus 124 ~---~~~--------~~~~~------------ei~~l~----~~gv~~fk~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (449)
T PRK08044 124 G---GLV--------SYNLD------------RLHELD----EVGVVGFKCFVATCGDRGIDNDFRDVNDWQFYKGAQKL 176 (449)
T ss_pred e---eeC--------CCCHH------------HHHHHH----HcCceEEEEEecccCcccccCCccCcCHHHHHHHHHHH
Confidence 0 000 00011 222222 223334444332211 1123455677778888
Q ss_pred HHcCCceeEeccCChhhhHHH--hhhcC-------CCCc--------hHHHHhhhCCCCCCeeeeeeccC-ChhHHHHHH
Q 011766 245 REFKTGIHMHVAEIPYENQVV--MDTRK-------VDHG--------TVTFLDKIEFLQNNLLSAHTVWV-NHTEIGLLS 306 (478)
Q Consensus 245 ~~~~~~v~~H~~~~~~~~~~~--~~~~~-------~~~~--------~~~~l~~~~~~~~~~~i~h~~~~-~~~~~~~~~ 306 (478)
.+.|+++.+|+.+..-..... ....+ ...+ ....+......+.+..+.|.+.. +-+.+.+++
T Consensus 177 ~~~~~~v~~H~E~~~l~~~~~~~~~~~G~~~~~~~~~~~P~~~E~~~v~r~~~lA~~~g~~vhi~HiSt~~~~~~i~~ak 256 (449)
T PRK08044 177 GELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVCHISSPEGVEEVTRAR 256 (449)
T ss_pred HhcCCEEEEecCCHHHHHHHHHHHHhcCCCChhhccccCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHH
Confidence 889999999997654321111 00000 0000 01122223333445556666632 224455556
Q ss_pred hcC--CeEEECccchhhc-----------cCCCcH---------HHHHHCCCcEEEcCCCCCCCCCc---CHHHH-----
Q 011766 307 RAG--VKVSHCPASAMRM-----------LGFAPI---------KEMLHADICVSLGTDGAPSNNRM---SIVDE----- 356 (478)
Q Consensus 307 ~~~--~~~~~~p~~~~~~-----------~~~~~~---------~~~~~~gv~v~~gsD~~~~~~~~---~~~~~----- 356 (478)
+.| +.+.+||...... .-.+|+ .+.+..|+..+++|||.|+.... ++++.
T Consensus 257 ~~G~~it~e~~~h~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~G~id~i~sDH~P~~~~~K~~~~~~~~~g~~ 336 (449)
T PRK08044 257 QEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMEAWGGIA 336 (449)
T ss_pred HCCCCEEEEcChhhhcccHHHhhCCCCcEEEcCCCCChHHHHHHHHHHhCCCceEEEcCCCCCChHHccCChhhCCCCce
Confidence 665 4566777753211 011333 35566899999999998863211 22211
Q ss_pred ---HHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhh
Q 011766 357 ---MYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITS 433 (478)
Q Consensus 357 ---~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~ 433 (478)
..+..+.... ....+++++++++++|.|||++||+. ++|+|++|++|||+|+|.+..+....++..+.
T Consensus 337 g~e~~l~~~~~~~--------v~~~~l~~~~~v~~~s~npA~~lgl~-~~G~i~~G~~ADlvi~d~~~~~~v~~~~~~s~ 407 (449)
T PRK08044 337 GLQNCMDVMFDEA--------VQKRGMSLPMFGKLMATNAADIFGLQ-QKGRIAPGKDADFVFIQPNSSYVLKNEDLEYR 407 (449)
T ss_pred EHHHHHHHHHHHH--------HHcCCCCHHHHHHHHHHhHHHHhCCC-CCCcCCCCCccCEEEECCCCcEEECHHHcccc
Confidence 1111111110 01236999999999999999999994 46999999999999999974432222221111
Q ss_pred -----hhhccCCCCeeEEEEccEEEEECCeee-cccHHHH
Q 011766 434 -----LVYCMRTENVVSVMCNGQWVMKNKKIL-LLMRGRL 467 (478)
Q Consensus 434 -----~~~~~~~~~v~~v~v~G~~v~~~g~~~-~~~~~~~ 467 (478)
+....-..+|.+||++|++||++++.+ ....|++
T Consensus 408 ~~~sp~~G~~l~G~v~~t~~~G~~v~~~~~~~~~~~~G~~ 447 (449)
T PRK08044 408 HKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQF 447 (449)
T ss_pred CCCCCCCCCEEeeeEEEEEECCEEEEECCccccCCCCccc
Confidence 101111357999999999999998754 3334444
|
|
| >cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=235.99 Aligned_cols=335 Identities=18% Similarity=0.180 Sum_probs=189.6
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhh-------hhhccCCCeEEeCCCCEEeeccccccccc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADIL-------QQFSQMADQIIDLQSQILLPGFVNTHVHT 89 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~-------~~~~~~~~~viD~~G~~v~PGfID~H~H~ 89 (478)
..++++|+|++|++.. . +..++|.|+||+|++|++..... ..+...+.++||++|++|+|||||+|+|+
T Consensus 63 ~~~DlVI~Na~IiD~~---g-i~~adI~IkdGrIvaIG~agnp~~~~~v~~~~~~g~~teVIDaeG~iV~PG~ID~HvH~ 138 (567)
T cd00375 63 DVLDLVITNALIIDYT---G-IYKADIGIKDGRIVAIGKAGNPDIMDGVTPNMIVGPSTEVIAGEGKIVTAGGIDTHVHF 138 (567)
T ss_pred ccCCEEEECeEEECCC---C-cEEEEEEEECCEEEEEecCCCccccccccccccCCCCCeEEECCCCEEeeceEECccCC
Confidence 3578999999999642 2 34579999999999999753210 01122356899999999999999999998
Q ss_pred chhhhccccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc------------CHHHHH---
Q 011766 90 SQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ------------HVSEMA--- 154 (478)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~------------~~~~~~--- 154 (478)
.. +. . ...++.+||||+++++.. ..+.+.
T Consensus 139 ~~----------------------------P~--~------~~aAlagGVTTvI~~G~gP~~gtnatp~t~g~~~l~~ml 182 (567)
T cd00375 139 IC----------------------------PQ--Q------IEEALASGITTMIGGGTGPAAGTKATTCTPGPWNIKRML 182 (567)
T ss_pred CC----------------------------cc--H------HHHHHcCCCcEEEcCCcCcccccCCCCCCCCHHHHHHHH
Confidence 21 00 0 245799999999995211 112222
Q ss_pred HHHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCH
Q 011766 155 KAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATD 234 (478)
Q Consensus 155 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (478)
+..+...+.... ... +. . ...+.+.++...+...++ .+..+..++
T Consensus 183 ~aa~~~pin~g~----~gk--g~---------~----------------~~l~eL~e~~~aGA~GfK----~~eD~g~t~ 227 (567)
T cd00375 183 QAADGLPVNIGF----LGK--GN---------G----------------SSPDALAEQIEAGACGLK----LHEDWGATP 227 (567)
T ss_pred HHhhcCCceEEE----Eec--Cc---------c----------------ccHHHHHHHHHcCCEEEE----ecCCCCCCH
Confidence 222222221111 000 00 0 111223333333322222 233345688
Q ss_pred HHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCC----hhHHHHHHhcCC
Q 011766 235 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN----HTEIGLLSRAGV 310 (478)
Q Consensus 235 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~----~~~~~~~~~~~~ 310 (478)
..+.++++.+.++++++.+|+....... +++. ......+......|..... |+.++.+...++
T Consensus 228 ~~i~~aL~~A~~~dv~VaiHadtlne~g------------~~E~-t~aa~~gr~iH~~H~egaggghapdi~~~~~~~nv 294 (567)
T cd00375 228 AAIDTCLSVADEYDVQVAIHTDTLNESG------------FVED-TIAAIKGRTIHTYHTEGAGGGHAPDIIKVAGHPNV 294 (567)
T ss_pred HHHHHHHHHHHhhCCEEEEECCCCCcch------------HHHH-HHHHhcCCeEEEEecCCCCcccchHHHHhcCCCCc
Confidence 8999999999999999999997532111 1111 0011111112222322211 333333333332
Q ss_pred e-EEECcc--------------------ch-------------hhccCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHH
Q 011766 311 K-VSHCPA--------------------SA-------------MRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDE 356 (478)
Q Consensus 311 ~-~~~~p~--------------------~~-------------~~~~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~ 356 (478)
- -++.|+ .+ .|...+..=..|.+.|+..+++||+...+.-......
T Consensus 295 lp~stnpt~p~t~nt~~e~~dm~m~~h~l~~~~~~d~~fa~srir~~ti~ae~~l~d~G~~s~~~sDs~~mgr~ge~~~r 374 (567)
T cd00375 295 LPSSTNPTRPFTVNTLDEHLDMLMVCHHLDPNIPEDVAFAESRIRAETIAAEDVLHDLGAISIMSSDSQAMGRVGEVILR 374 (567)
T ss_pred ccCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhccchhhccchhhhccCcEEEEccchhhcCccceeeec
Confidence 2 112222 11 0111122233577899999999998644322222211
Q ss_pred -HHHHHHHhcccccccCCCCCCCCCCHHHH---HHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhh
Q 011766 357 -MYLASLINKGREVFANGTTDPAALPAETV---LRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRIT 432 (478)
Q Consensus 357 -~~~~~~~~~~~~~~~~~~~~~~~ls~~~a---l~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~ 432 (478)
.+.+......+... .+ .....+..++ |+++|.|||+++|+++++|+|++||.||||||+.+.+.
T Consensus 375 ~~q~a~k~~~~~g~~-~~--~~~~~~n~r~~~~L~~~Tin~A~alG~~~~vGSLe~GK~ADlVv~d~~~f~--------- 442 (567)
T cd00375 375 TWQTAHKMKAQRGPL-PE--DSGDADNFRVKRYIAKYTINPAIAHGISHEVGSVEVGKLADLVLWEPAFFG--------- 442 (567)
T ss_pred hHHHHHHHHHhcCCC-Cc--ccccCchHHHHHHHHHhhHHHHHHcCcccCceeeCCCCccCEEEEcCcccC---------
Confidence 11222221111111 00 1112455444 99999999999999999999999999999999997442
Q ss_pred hhhhccCCCCeeEEEEccEEEEEC-Cee
Q 011766 433 SLVYCMRTENVVSVMCNGQWVMKN-KKI 459 (478)
Q Consensus 433 ~~~~~~~~~~v~~v~v~G~~v~~~-g~~ 459 (478)
.++..||++|+++|.. |..
T Consensus 443 --------~~p~~vi~~G~iv~~~~gd~ 462 (567)
T cd00375 443 --------VKPEMVLKGGFIAYAQMGDP 462 (567)
T ss_pred --------CCeeEEEECCEEEEecCCCc
Confidence 4678999999999997 543
|
Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers. |
| >PRK09060 dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-28 Score=237.98 Aligned_cols=372 Identities=17% Similarity=0.170 Sum_probs=207.3
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~ 96 (478)
++++++|+|++|+++++ . ..++|+|+||+|++|++... ..+.++||++|++|+|||||+|+|+....
T Consensus 3 ~~~d~~i~~~~v~~~~~---~-~~~~i~i~~g~I~~i~~~~~------~~~~~~iD~~G~~v~PG~ID~HvH~~~~~--- 69 (444)
T PRK09060 3 QTFDLILKGGTVVNPDG---E-GRADIGIRDGRIAAIGDLSG------ASAGEVIDCRGLHVLPGVIDSQVHFREPG--- 69 (444)
T ss_pred CcCcEEEECCEEECCCC---C-eeeEEEEECCEEEEecCCCC------CCCceEEECCCCEEccCEEeccccccCCC---
Confidence 34688999999997542 2 34799999999999986432 12457999999999999999999983210
Q ss_pred ccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC-----HHHHHHHHHHhCCeEEEecccc
Q 011766 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-----VSEMAKAVELLGLRACLVQSTM 171 (478)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~ 171 (478)
.... .......+.++.+|||++++++... ...+....+...-...+.....
T Consensus 70 ---------------------~~~~---e~~~t~~~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~a~~~~~~d~~~~ 125 (444)
T PRK09060 70 ---------------------LEHK---EDLETGSRAAVLGGVTAVFEMPNTNPLTTTAEALADKLARARHRMHCDFAFY 125 (444)
T ss_pred ---------------------CCcc---chHHHHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhcccceeeEEEE
Confidence 0001 1223344568999999999975321 2222222222221111111111
Q ss_pred cCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEec--cccccCCHHHHHHHHHHHHHcCC
Q 011766 172 DCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGI--RQIMNATDRLLLETRDMAREFKT 249 (478)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~a~~~~~ 249 (478)
..+. ..... +..++. .+. +...++.+... ..........+.+++ ...+.
T Consensus 126 ~~~~-----------~~~~~------------~l~el~-~~~--gv~g~k~fm~~~~~~~~~~d~~~l~~~~---~~~~~ 176 (444)
T PRK09060 126 VGGT-----------RDNAD------------ELAELE-RLP--GCAGIKVFMGSSTGDLLVEDDEGLRRIL---RNGRR 176 (444)
T ss_pred eccC-----------CCCHH------------HHHHHH-hhc--CceEEEEEeccCCCCcccCCHHHHHHHH---HhCCC
Confidence 0000 00000 222221 111 22223333221 111122344454443 44588
Q ss_pred ceeEeccCChhhhH--HHhhh-c----CCC-Cc-----hH-HHHhhhCCCCCCeeeeeeccCChhHHHHHHhc--CCeEE
Q 011766 250 GIHMHVAEIPYENQ--VVMDT-R----KVD-HG-----TV-TFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRA--GVKVS 313 (478)
Q Consensus 250 ~v~~H~~~~~~~~~--~~~~~-~----~~~-~~-----~~-~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~--~~~~~ 313 (478)
.+.+|+.+...... ..... . ... .. .+ ..+......+.+..+.|.+. .+.++.+++. .+.+.
T Consensus 177 ~v~~H~E~~~l~~~~~~~~~~g~~~~~~~~~p~~aE~~av~~~~~la~~~~~~lhi~h~st--~~~v~~i~~~~~~vt~e 254 (444)
T PRK09060 177 RAAFHSEDEYRLRERKGLRVEGDPSSHPVWRDEEAALLATRRLVRLARETGRRIHVLHVST--AEEIDFLADHKDVATVE 254 (444)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCC--HHHHHHHHHhCCCeEEE
Confidence 88899865432111 00000 0 000 00 01 12333344455666777774 4555555433 36677
Q ss_pred ECccchhhc------------c---------CCCcHHHHHHCCCcEEEcCCCCCCCCC------------cCHHHHHHHH
Q 011766 314 HCPASAMRM------------L---------GFAPIKEMLHADICVSLGTDGAPSNNR------------MSIVDEMYLA 360 (478)
Q Consensus 314 ~~p~~~~~~------------~---------~~~~~~~~~~~gv~v~~gsD~~~~~~~------------~~~~~~~~~~ 360 (478)
+||.+.... . ....+.+.++.|+..+++||+.++... ..-.+ ....
T Consensus 255 v~ph~l~l~~~~~~~~~~~~~k~~PPlr~~~~~~~l~~al~~G~id~i~sDh~p~~~~~k~~~~~~~~~G~~g~e-~~~~ 333 (444)
T PRK09060 255 VTPHHLTLAAPECYERLGTLAQMNPPIRDARHRDGLWRGVRQGVVDVLGSDHAPHTLEEKAKPYPASPSGMTGVQ-TLVP 333 (444)
T ss_pred eChHHhccCchhhcccCCceEEEeCCCCCHHHHHHHHHHHhCCCccEEecCCCCCCHHHhcCCcccCCCCcccHH-HHHH
Confidence 887532100 0 012344677889999999999876311 00011 1111
Q ss_pred HHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCc--------CChhh
Q 011766 361 SLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPV--------HDRIT 432 (478)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~--------~d~~~ 432 (478)
.+... ..+..+|++++++++|.|||+++|+ +++|+|++|++|||+|+|.+..+..+. .+|+.
T Consensus 334 l~~~~---------v~~g~l~~~~~~~~~s~~pa~~~gl-~~~G~l~~G~~ADlvl~d~~~~~~v~~~~~~s~~~~sp~~ 403 (444)
T PRK09060 334 IMLDH---------VNAGRLSLERFVDLTSAGPARIFGI-AGKGRIAVGYDADFTIVDLKRRETITNEWIASRCGWTPYD 403 (444)
T ss_pred HHHHH---------HHcCCCCHHHHHHHHhHhHHHHhCC-CCCCcccCCCcCCEEEEcCCCCEEEChHHhcccCCCCCCC
Confidence 11110 0122499999999999999999999 457999999999999999874332221 12332
Q ss_pred hhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHH
Q 011766 433 SLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQL 470 (478)
Q Consensus 433 ~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~ 470 (478)
.... ..++.+||++|+++|++|+++....|+.++.
T Consensus 404 g~~l---~g~~~~tiv~G~~v~~~g~~~~~~~G~~~~~ 438 (444)
T PRK09060 404 GKEV---TGWPVGTIVRGQRVMWDGELVGPPTGEPVRF 438 (444)
T ss_pred CCEE---eeeEEEEEECCEEEEECCEEccCCCccCccc
Confidence 2211 2468899999999999999987667777654
|
|
| >TIGR01178 ade adenine deaminase | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-28 Score=237.99 Aligned_cols=327 Identities=18% Similarity=0.239 Sum_probs=193.0
Q ss_pred eeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccC
Q 011766 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (478)
Q Consensus 20 ~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~ 99 (478)
+++|+|++|+++.+ .....++|+|++|+|++|++.. +.++||++|++|+|||||+|+|+..+.
T Consensus 1 dlli~n~~ivd~~~--~~~~~~dI~I~~g~I~~ig~~~---------~~~viDa~G~~v~PG~ID~H~Hi~~~~------ 63 (552)
T TIGR01178 1 DIVIKNAKIIDVYN--GEIIPGDIAIANGHIAGVGKYN---------GVKVIDALGEYAVPGFIDAHIHIESSM------ 63 (552)
T ss_pred CEEEEeeEEEeCCC--CcEEeeeEEEECCEEEEecCCC---------CCeEEECCCCEEEeCeEecccccCCCC------
Confidence 57899999997543 2345679999999999998631 358999999999999999999994211
Q ss_pred CCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc-----CHH---HHHHHHHHhCCeEEEecccc
Q 011766 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-----HVS---EMAKAVELLGLRACLVQSTM 171 (478)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~-----~~~---~~~~~~~~~g~~~~~~~~~~ 171 (478)
..+ ..+ ...++.+||||+++.+.. ... .+.+......++.+...+.
T Consensus 64 ------------------~~~-~~~------~~~al~~GvTtvv~~P~~~~~v~g~~~~~~~~~~a~~~~~d~~~~~~s- 117 (552)
T TIGR01178 64 ------------------LTP-SEF------AKLVLPHGVTTVVSDPHEIANVNGEDGINFMLNNAKKTPLNFYFMLPS- 117 (552)
T ss_pred ------------------CCh-hHH------HHHHHCCCEEEEEcCCCCCCCCCCHHHHHHHHHHhhcCCcEEEEECCC-
Confidence 111 112 234799999999975322 122 2233333344443222111
Q ss_pred cCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCce
Q 011766 172 DCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGI 251 (478)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v 251 (478)
+..+.+ .+..... +..++.++++++ .+.-.++.+..+......+.+.++.+ +.+++.|..+
T Consensus 118 -~vp~~~----~e~~g~~----------~~~~~i~~~~~~---~~V~glke~m~~~~v~~~d~~~l~~i-~~a~~~g~~I 178 (552)
T TIGR01178 118 -CVPALQ----FETSGAV----------LTAEDIDELMEL---DEVLGLAEVMDYPGVINADIEMLNKI-NSARKRNKVI 178 (552)
T ss_pred -CCCCCc----ccCCCCc----------cCHHHHHHHHcC---CCccEEEEEecchhhcCCCHHHHHHH-HHHHhCCCEE
Confidence 111111 1111111 011133333332 12223443333333333455666655 7889999999
Q ss_pred eEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhccCCCcHHHH
Q 011766 252 HMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKEM 331 (478)
Q Consensus 252 ~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 331 (478)
..|+....... ...+...+ ....|+.. +.++...-.+.|..+...-.+..+ ....+..+
T Consensus 179 ~gHap~l~~~e-------------L~~~~~aG-----i~~dHe~~-s~~ea~e~~~~Gm~~~ir~gs~~~--n~~~~~~~ 237 (552)
T TIGR01178 179 DGHCPGLSGKL-------------LNKYISAG-----ISNDHEST-SIEEAREKLRLGMKLMIREGSAAK--NLEALHPL 237 (552)
T ss_pred EecCCCCCHHH-------------HHHHHHcC-----CCCCcCcC-CHHHHHHHHHCCCEEEEeCCcccc--CHHHHHHH
Confidence 99986433211 11122222 23467655 445555556778777654332211 11122222
Q ss_pred H--HCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccC
Q 011766 332 L--HADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAG 409 (478)
Q Consensus 332 ~--~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G 409 (478)
+ ..+.+++++||.. +..+++.+.++........ ..++++++|++++|.|||+++|+++ .|+|++|
T Consensus 238 ~~~~~~~~~~l~TD~~---~~~~~~~~g~l~~~v~~ai---------~~g~~~~~Al~maT~npA~~lgl~~-~G~I~pG 304 (552)
T TIGR01178 238 INEKNCRSLMLCTDDR---HVNDILNEGHINHIVRRAI---------EHGVDPFDALQMASINPAEHFGIDV-GGLIAPG 304 (552)
T ss_pred HhhcCCceEEEEeCCC---ChhHHHhcCCHHHHHHHHH---------HcCCCHHHHHHHHHHHHHHHcCCCC-CcccCCC
Confidence 2 3558999999942 1233444332322221110 1259999999999999999999964 7999999
Q ss_pred ccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEEC-----Ceee
Q 011766 410 KKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKN-----KKIL 460 (478)
Q Consensus 410 ~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~-----g~~~ 460 (478)
+.|||++++.. ....+..||++|++|.++ |+.+
T Consensus 305 ~~ADlvvl~~l------------------~~~~v~~v~~~G~~v~~~~~~~~g~~~ 342 (552)
T TIGR01178 305 DPADFVILKDL------------------RNFKVNKTYVKGKLLDLNEVFNDEISR 342 (552)
T ss_pred CcCCEEEECCC------------------CCceEEEEEECCEEEcccccccCCccc
Confidence 99999999952 125899999999999998 7753
|
The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected. |
| >PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-28 Score=229.14 Aligned_cols=352 Identities=17% Similarity=0.139 Sum_probs=203.3
Q ss_pred eEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCC
Q 011766 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (478)
Q Consensus 21 ~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~ 100 (478)
++|+|++|++++ ..+.+++|+|+||+|++|++..+. + .+.++||++|++|+|||||+|+|.....
T Consensus 2 ~~i~n~~i~~~~---~~~~~~~v~IedgkI~~I~~~~~~----~-~~~~~ID~~G~~l~PG~ID~HvHG~~g~------- 66 (382)
T PRK11170 2 YALTNGRIYTGH---EVLDDHAVVIADGLIEAVCPVAEL----P-PGIEQRDLNGAILSPGFIDLQLNGCGGV------- 66 (382)
T ss_pred EEEEeeEEECCC---CeEeCCEEEEECCEEEEecCCccC----C-CCCeEEeCCCCEEccceeeeeecCccCc-------
Confidence 578999999753 466778999999999999875321 1 2447999999999999999999973310
Q ss_pred CCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCH-HHH---HHHHHH-hCCeEEEecccccCCC
Q 011766 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHV-SEM---AKAVEL-LGLRACLVQSTMDCGE 175 (478)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~-~~~---~~~~~~-~g~~~~~~~~~~~~~~ 175 (478)
++ ....... .........+.+++.|||++++...... ... .+.... ..........+...|+
T Consensus 67 -~~---------~~~~~~~---~~~~l~~~~~~~~~~GvTt~lpT~it~~~~~~~~~l~~~~~~~~~~~a~~~G~HlEGP 133 (382)
T PRK11170 67 -QF---------NDTAEAI---SVETLEIMQKANEKSGCTSFLPTLITSSDELMKQAVRVMREYLAKHPNQALGLHLEGP 133 (382)
T ss_pred -cc---------ccCccCC---CHHHHHHHHHHHHhcCEeEEeeeccCCCHHHHHHHHHHHHHHHhcCCCeEEEEEeecC
Confidence 00 0000000 1122233344579999999998653322 211 111111 1111111223344555
Q ss_pred CCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeE-e
Q 011766 176 GLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHM-H 254 (478)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~-H 254 (478)
.+.+...+.+.++.+.+ ...+.++.+.... +.++.+.-.++ . .. . ++++.+.+.|+.+.+ |
T Consensus 134 fi~~~~~Gah~~~~~~~-----------p~~~~~~~~~~~~-~~i~~iTlAPE-~-~~---~-~~i~~l~~~gi~vs~GH 195 (382)
T PRK11170 134 YLNLVKKGTHNPEFIRK-----------PDAEMVDFLCENA-DVITKVTLAPE-M-VD---A-EVIRKLVEAGIVVSAGH 195 (382)
T ss_pred CCCcccCCCCCHHHhcC-----------cCHHHHHHHHhcc-CCEEEEEECCC-C-Cc---H-HHHHHHHHCCcEEEeeC
Confidence 55555444444444331 2344455554443 34554332222 1 12 2 567778888888776 4
Q ss_pred ccCChhhhHHHhhhcCCCCchHHHHhhhCCCCC----------------CeeeeeeccCChhHHHHHHhcCCeEEECccc
Q 011766 255 VAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQN----------------NLLSAHTVWVNHTEIGLLSRAGVKVSHCPAS 318 (478)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~ 318 (478)
...+......... .+. ....+.++.+..+.. -.+|..+.|+.|+.++.+.+....-.+..+.
T Consensus 196 s~A~~~~~~~a~~-~Ga-~~~THlfNaM~~~~hR~pg~vga~l~~~~~~~elI~Dg~Hv~p~~~~~~~~~k~~~~~lvtD 273 (382)
T PRK11170 196 SNATYEEAKAGFR-AGI-TFATHLYNAMPYITGREPGLVGAILDEPDVYCGIIADGLHVDYANIRNAKRLKGDKLCLVTD 273 (382)
T ss_pred CcCCHHHHHHHHH-cCC-CEEeeccccCCcccCCCcchhhHhhcCCCcEEEEEcCcccCCHHHHHHHHHhcCCcEEEEec
Confidence 4332222111111 111 011222222222211 1378899999999999887765332233344
Q ss_pred hhhccCCCcHHHHHHCCCcEEE------cCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHH
Q 011766 319 AMRMLGFAPIKEMLHADICVSL------GTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATIN 392 (478)
Q Consensus 319 ~~~~~~~~~~~~~~~~gv~v~~------gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~ 392 (478)
.+...+.++-...+ -|..+.+ -.|+...++..++.+.++.+... .++++++|++++|.|
T Consensus 274 a~~~~G~~~g~y~l-~~~~v~v~~g~~~~~~G~LAGs~l~l~~~v~~l~~~--------------~~~~~~eal~~aT~n 338 (382)
T PRK11170 274 ATAPAGANIEQFIF-AGKTIYYRDGLCVDENGTLSGSALTMIEAVRNLVEH--------------VGIALDEALRMATLY 338 (382)
T ss_pred cccCCCCCCCeEEE-CCEEEEEECCEEECCCCcccccHhHHHHHHHHHHHh--------------cCCCHHHHHHHHHHH
Confidence 44443433222211 1222211 13443444556677777665422 269999999999999
Q ss_pred HHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEE
Q 011766 393 GAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMK 455 (478)
Q Consensus 393 pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~ 455 (478)
||+.+|+++++|+|++|+.|||+|||.+ .++..||++|++++.
T Consensus 339 pA~~lgl~~~~G~i~~G~~ADlvvld~~--------------------~~v~~v~~~G~~~~~ 381 (382)
T PRK11170 339 PARAIGVDKRLGSIEAGKVANLTAFTRD--------------------FKITKTIVNGNEVVT 381 (382)
T ss_pred HHHHhCCCCCccccCCCCcCCEEEECCC--------------------CcEEEEEECCEEeec
Confidence 9999999776899999999999999986 589999999998874
|
|
| >TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-28 Score=228.00 Aligned_cols=348 Identities=18% Similarity=0.220 Sum_probs=203.6
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcccc
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~ 98 (478)
++++|+|++|++++ ....+++|.|+||+|++|++..+.+ ...++||++|++|+|||||+|+|.....
T Consensus 3 ~~~~i~n~~i~~~~---~~~~~~~i~V~dGkI~~I~~~~~~~-----~~~~viD~~G~~i~PGfID~HvHg~~g~----- 69 (380)
T TIGR00221 3 ESYLLKDIAIVTGN---EVIDNGAVGINDGKISTVSTEAELE-----PEIKEIDLPGNVLTPGFIDIHIHGCGGV----- 69 (380)
T ss_pred ceEEEEeeEEECCC---CEEeccEEEEECCEEEEEcccccCC-----CCCeEEECCCCEEccceeeeeeccccCc-----
Confidence 46899999999743 4566789999999999998753221 2457999999999999999999984310
Q ss_pred CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCH-HHH---HHHHHH-h-CCeEEEeccccc
Q 011766 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHV-SEM---AKAVEL-L-GLRACLVQSTMD 172 (478)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~-~~~---~~~~~~-~-g~~~~~~~~~~~ 172 (478)
++ ...+ ........+.+++.|||++.+...... ..+ .+.... . ......-..+..
T Consensus 70 ---~~------------~~~~----~e~~~~~~~~~~~~GvTt~l~t~~t~~~~~~~~~l~~~~~~~~~~~~a~~lG~Hl 130 (380)
T TIGR00221 70 ---DT------------NDAS----FETLEIMSERLPKSGCTSFLPTLITQPDENIKQAVKNMREYLAKEKNAQALGLHL 130 (380)
T ss_pred ---CC------------CCCC----HHHHHHHHHHHHhcCeeEEeeeccCCCHHHHHHHHHHHHHHHhccCCceeeeEee
Confidence 00 0011 123334456788999999998653332 211 111111 1 001111223344
Q ss_pred CCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCcee
Q 011766 173 CGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIH 252 (478)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~ 252 (478)
.|+.+.+...+.+.++.+. +...+.++++.+...+.++.++-.++.+ - -.++++.+.+.|+.+.
T Consensus 131 EGPfi~~~~~Gah~~~~i~-----------~p~~~~~~~~~~~~~~~i~~vTlAPE~~-~----~~~~i~~l~~~gi~vs 194 (380)
T TIGR00221 131 EGPFLSPEKKGAHPPEYIR-----------EPDVELFKKFLCEAGGVITKVTLAPEED-Q----HFELIRHLKDAGIIVS 194 (380)
T ss_pred ecCcCChhhcCCCCHHHhh-----------CcCHHHHHHHHHhcCCCEEEEEECCCCC-C----hHHHHHHHHHCCeEEE
Confidence 5555555555544444433 2334445555554446666543222221 1 2355677778888876
Q ss_pred E-eccCChhhhHHHhhhcCCCCchHHHHhhhCCCCC----------------CeeeeeeccCChhHHHHHHhcCC-eEEE
Q 011766 253 M-HVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQN----------------NLLSAHTVWVNHTEIGLLSRAGV-KVSH 314 (478)
Q Consensus 253 ~-H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~i~h~~~~~~~~~~~~~~~~~-~~~~ 314 (478)
+ |...+......... .+. ....+.++.+..+.. -.+|..+.|++++.++.+.+... .-.+
T Consensus 195 ~GHs~A~~~~~~~a~~-~Ga-~~~THlfNaM~~~~hR~pg~vga~l~~~~~~~elI~Dg~Hv~p~~~~~~~r~kg~~~~~ 272 (380)
T TIGR00221 195 AGHTNATYELAKAAFK-AGA-THATHLYNAMSPIHHREPGVIGAVLDHDDVYTEIIADGIHIHPLNIRLAKKLKGDSKLC 272 (380)
T ss_pred eeCCCCCHHHHHHHHH-cCC-CeeeeeccCCCCcCCCCCcHHHHHhcCCCcEEEEEcCCCcCCHHHHHHHHHhcCCCcEE
Confidence 4 55443222211111 010 011122222222211 13778899999999998877653 2223
Q ss_pred CccchhhccCCCcHHHHHHCCCcEE------EcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHH
Q 011766 315 CPASAMRMLGFAPIKEMLHADICVS------LGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRM 388 (478)
Q Consensus 315 ~p~~~~~~~~~~~~~~~~~~gv~v~------~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~ 388 (478)
..+..++..+.++-...+ -|..+. .-.|+...+...++.+.++..... .++++++++++
T Consensus 273 lvtDa~~~~g~~~G~y~l-~~~~v~~~~g~~~~~~g~LAGs~ltl~~~v~~l~~~--------------~~~~~~eal~~ 337 (380)
T TIGR00221 273 LVTDSMAAAGAKDGVFIF-GGKTVYIREGTCLDSNGTLAGSSLTMIEGARNLVEF--------------TNISLTDAARM 337 (380)
T ss_pred EEeccccccCCCCceEeE-CCEEEEEECCEEEcCCCceechhhhHHHHHHHHHHh--------------hCCCHHHHHHH
Confidence 333444443433322111 122221 113443344456677776654321 25999999999
Q ss_pred HhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccE
Q 011766 389 ATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQ 451 (478)
Q Consensus 389 ~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~ 451 (478)
+|.|||+.+|+++++|+|++|+.|||+++|.+ ..+..||++|+
T Consensus 338 aT~npA~~lgl~~~~G~i~~G~~ADlvv~d~~--------------------~~v~~t~~~G~ 380 (380)
T TIGR00221 338 SSLNPARALGIDDRLGSVTVGKDANLVVFTPD--------------------FEVILTIVNGN 380 (380)
T ss_pred HhHHHHHHhCCCCCCcccCCCCcCCEEEECCC--------------------CCEEEEEeCCC
Confidence 99999999999776899999999999999986 58999999995
|
|
| >COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=225.61 Aligned_cols=334 Identities=20% Similarity=0.294 Sum_probs=203.6
Q ss_pred CccceeEEEecEEEeeCCCCceeecceEEEECCEEEEE-cCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhh
Q 011766 16 GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAI-GQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLA 94 (478)
Q Consensus 16 ~~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~i-g~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~ 94 (478)
....+++++||+|++.- .+.+..++|+|.+|+|+.| ++.. .++.++||+.|+||.|||||.|.|+
T Consensus 21 ~~~adlv~~ng~ivdv~--~gei~~~dIaI~~grI~~v~~~~~-------~e~~~~iDa~g~yivPGfID~H~HI----- 86 (584)
T COG1001 21 RAKADLVLKNGRIVDVV--TGEIYKGDIAIAGGRIVGVIGEYR-------AEATEVIDAAGRYIVPGFIDAHLHI----- 86 (584)
T ss_pred CCCCCEEEECCEEEEee--eccEEeeeEEEECCEEEEeecCcC-------cccceeecCCCCEeccceeecceec-----
Confidence 45679999999999765 3445678999999999995 4432 2467999999999999999999999
Q ss_pred ccccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeec-C-------CccCHHHHHHHHHHhCCeEEE
Q 011766 95 KGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAE-A-------GGQHVSEMAKAVELLGLRACL 166 (478)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~-~-------~~~~~~~~~~~~~~~g~~~~~ 166 (478)
++++..+..|... .+.+|+||++. . |.....-+.+.++...++.+.
T Consensus 87 --------------------ESSm~tP~~FA~~------Vlp~GtTtvV~DPHEIaNV~G~~Gi~~ml~~a~~~pl~~~~ 140 (584)
T COG1001 87 --------------------ESSMLTPSEFARA------VLPHGTTTVVSDPHEIANVLGEDGIRFMLDEAKETPLKVYV 140 (584)
T ss_pred --------------------cccccCHHHHHHH------hhccCceEEeeCcHHHHhhccHHHHHHHHHHHhhCCeEEEE
Confidence 4455445555444 78999999874 2 222233455666667777765
Q ss_pred ecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHH
Q 011766 167 VQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMARE 246 (478)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 246 (478)
..+..-.. .+ .+..... +..+..++++.+-.-.+ +.-+..+++.-.-+++.+ ..++.+++
T Consensus 141 ~~pScVPa--t~----~Et~Ga~----------l~a~~i~e~~~~p~Vig---l~E~Mn~pgVi~~D~~~l-~kl~a~~~ 200 (584)
T COG1001 141 MLPSCVPA--TP----FETSGAE----------LTAEDIKELLEHPEVIG---LGEMMNFPGVIEGDPDML-AKLEAARK 200 (584)
T ss_pred ecccCccC--Cc----cccCCce----------ecHHHHHHHhhCCCccc---hhhhcCCchhccCCHHHH-HHHHHHHH
Confidence 43222111 10 0111111 11223334333311111 111133344444455555 45688999
Q ss_pred cCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhccCCC
Q 011766 247 FKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFA 326 (478)
Q Consensus 247 ~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 326 (478)
.|.++.-|+...... ....+...+... .|-....+|.+++ .+.|..+.+--.+..+. -..
T Consensus 201 ~~k~VdGHapgl~g~-------------~Ln~Y~aaGi~t-----DHE~~t~EEa~~k-lr~Gm~i~iReGS~a~d-l~~ 260 (584)
T COG1001 201 AGKPVDGHAPGLSGK-------------ELNAYIAAGIST-----DHESTTAEEALEK-LRLGMKIMIREGSAAKD-LAA 260 (584)
T ss_pred cCCeecccCCCCChH-------------HHHHHHhcCCCc-----CcccCCHHHHHHH-HhCCcEEEEEcCchhhh-HHH
Confidence 999999999775421 112222333222 3444433444454 56777665432222110 011
Q ss_pred cHHHHHHCC-CcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccc
Q 011766 327 PIKEMLHAD-ICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGS 405 (478)
Q Consensus 327 ~~~~~~~~g-v~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~ 405 (478)
.++.+-+.| -.++++||.... .++..+-.+..++.. + .++|+++.+|++|+|.|||+.+|+++ +|.
T Consensus 261 l~~~i~e~~~~~~~lcTDD~~p---~dl~~eGhld~~vR~---A------i~~Gv~p~~a~qmAtiN~A~~~gl~~-~G~ 327 (584)
T COG1001 261 LLPAITELGSRRVMLCTDDRHP---DDLLEEGHLDRLVRR---A------IEEGVDPLDAYQMATINPAEHYGLDD-LGL 327 (584)
T ss_pred HHHHHhhcCCceEEEECCCCCh---hHhhhcCCHHHHHHH---H------HHcCCCHHHHHHHHhcCHHHHcCCcc-ccc
Confidence 223333445 468999997432 122222222221111 1 13479999999999999999999965 899
Q ss_pred cccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeee
Q 011766 406 LEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKIL 460 (478)
Q Consensus 406 l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~ 460 (478)
|+||+.||||+++.- ++.++..|+++|++|.++|+.+
T Consensus 328 iAPG~~ADlvi~~DL------------------~~~~v~~V~~~G~~v~~~g~~l 364 (584)
T COG1001 328 IAPGRRADLVILEDL------------------RNFKVTSVLIKGRVVAEDGKAL 364 (584)
T ss_pred ccCCccccEEEEccc------------------ccCceeEEEECCEEEecCCcee
Confidence 999999999999862 3479999999999999999743
|
|
| >cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-27 Score=226.43 Aligned_cols=340 Identities=21% Similarity=0.277 Sum_probs=196.2
Q ss_pred eEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCC
Q 011766 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (478)
Q Consensus 21 ~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~ 100 (478)
++|+|++|++++. ..+++|+|+||+|++|++..+.+ ...+.++||++|++|+|||||+|+|+......
T Consensus 2 ~~i~~~~v~~~~~----~~~~~v~i~~g~I~~v~~~~~~~---~~~~~~~id~~g~~v~PG~id~H~H~~~~~~~----- 69 (387)
T cd01308 2 TLIKNAEVYAPEY----LGKKDILIAGGKILAIEDQLNLP---GYENVTVVDLHGKILVPGFIDQHVHIIGGGGE----- 69 (387)
T ss_pred EEEECcEEeCCCC----ccceEEEEECCEEEEEeCCcccc---cCCCCeEEECCCCEEccCeeehhhCcccccCC-----
Confidence 5799999997532 35789999999999999764321 11356899999999999999999999531000
Q ss_pred CCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCc-----cCHH---HHHHHHHHhCCeEEEeccccc
Q 011766 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-----QHVS---EMAKAVELLGLRACLVQSTMD 172 (478)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~-----~~~~---~~~~~~~~~g~~~~~~~~~~~ 172 (478)
.. ....+.+ ....+++++|+||++++.. .... ...+.+...|++.+.....+.
T Consensus 70 ~~------------~~~~~~~-------~~~~~~~~~G~tt~~d~~~~~~~~~~~~~~~~~~~~~~~~Gv~~v~~~~~~~ 130 (387)
T cd01308 70 GG------------PSTRTPE-------VTLSDLTTAGVTTVVGCLGTDGISRSMEDLLAKARALEEEGITCFVYTGSYE 130 (387)
T ss_pred Cc------------ccccCHH-------HHHHHHHhCCceEEecCcCCCCCCCCHHHHHHHHHHHHHhCCEEEEEecccC
Confidence 00 0001111 2345679999999999762 1122 334455678999886544332
Q ss_pred CCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCC---
Q 011766 173 CGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKT--- 249 (478)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~--- 249 (478)
.. . ....+... .....++.+.. .+.. ............+.+.++.+.++..+.
T Consensus 131 ~~----~----~~~~~~~~------------~~~~~i~~~~~--~g~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 186 (387)
T cd01308 131 VP----T----RTITGSIR------------KDLLLIDKVIG--VGEI--AISDHRSSQPTVEELARIAAEARVGGLLGG 186 (387)
T ss_pred CC----C----cCchhhHH------------HHHHHHHHhcC--cceE--EEcCCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 11 0 00000000 11122344322 1111 112222223455566666666665332
Q ss_pred ---ceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhH---HHHHHhcCCeEEECccchhh--
Q 011766 250 ---GIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE---IGLLSRAGVKVSHCPASAMR-- 321 (478)
Q Consensus 250 ---~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~---~~~~~~~~~~~~~~p~~~~~-- 321 (478)
.+++|........+. ..+++...+.--.+.+..|... +.+. .....+.|..+.+.-.....
T Consensus 187 ~~~~~~vh~~~~~~~~~~----------i~~~~~~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~~v~i~~~~~~~~~ 255 (387)
T cd01308 187 KAGIVHIHLGDGKRALSP----------IFELIEETEIPITQFLPTHINR-TAPLFEQGVEFAKMGGTIDLTSSIDPQFR 255 (387)
T ss_pred CCcEEEEEeCCchHHHHH----------HHHHHHhcCCCcceeECCcccC-CHHHHHHHHHHHHcCCcEEEECCCCcccc
Confidence 367777654322221 1123333232111344444443 4332 33344556544433221111
Q ss_pred c----cCCCcHHHHHHCCC---cEEEcCCCCCC---CCC------------cCHHHHHHHHHHHhcccccccCCCCCCCC
Q 011766 322 M----LGFAPIKEMLHADI---CVSLGTDGAPS---NNR------------MSIVDEMYLASLINKGREVFANGTTDPAA 379 (478)
Q Consensus 322 ~----~~~~~~~~~~~~gv---~v~~gsD~~~~---~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (478)
. .....++.+++.|+ +++++||+... ... ..++..+... + ...+
T Consensus 256 ~~~~~~~~~~l~~~~~~g~~~d~i~l~TD~~~~~p~~~~~g~~~~~g~~~~~~~~~~~~~~--v------------~~~~ 321 (387)
T cd01308 256 KEGEVRPSEALKRLLEQGVPLERITFSSDGNGSLPKFDENGNLVGLGVGSVDTLLREVREA--V------------KCGD 321 (387)
T ss_pred ccCccChHHHHHHHHHhCCCCCcEEEEECCCCCcccCccCCeEEecCcCcHHHHHHHHHHH--H------------HhCC
Confidence 1 12245567888886 47999997311 000 0111222211 1 1235
Q ss_pred CCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCee
Q 011766 380 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKI 459 (478)
Q Consensus 380 ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~ 459 (478)
+|++++++++|.|||+++|+++ +|+|++|++|||+|+|.+ ..+..|+++|++|+++|++
T Consensus 322 i~~~~al~~~T~npA~~lg~~~-~G~i~~G~~ADlvv~d~~--------------------~~~~~~~~~G~~v~~~~~~ 380 (387)
T cd01308 322 IPLEVALRVITSNVARILKLRK-KGEIQPGFDADLVILDKD--------------------LDINSVIAKGQIMVRNGKL 380 (387)
T ss_pred CCHHHHHHHHHHHHHHHhCCCC-CCCcCCCCcCCEEEEcCC--------------------CCEEEEEECCEEEEECCeE
Confidence 9999999999999999999965 799999999999999986 4789999999999999998
Q ss_pred ec
Q 011766 460 LL 461 (478)
Q Consensus 460 ~~ 461 (478)
+.
T Consensus 381 ~~ 382 (387)
T cd01308 381 LV 382 (387)
T ss_pred ee
Confidence 64
|
Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides. |
| >PRK09059 dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-27 Score=227.30 Aligned_cols=361 Identities=14% Similarity=0.116 Sum_probs=201.4
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccc
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~ 97 (478)
+.+++|+|++|+++++ ....+++|+|+||+|++|++..... ..+ .+.++||++|++|+|||||+|+|+....
T Consensus 2 ~~~~~i~n~~v~~~~~--~~~~~~~v~I~~G~I~~i~~~~~~~-~~~-~~~~viDa~G~~v~PG~ID~HvH~~~~~---- 73 (429)
T PRK09059 2 MRPILLANARIIDPSR--GLDEIGTVLIEDGVIVAAGKGAGNQ-GAP-EGAEIVDCAGKAVAPGLVDARVFVGEPG---- 73 (429)
T ss_pred CcCEEEEeeEEECCCC--CcccceEEEEECCEEEEecCccccc-cCC-CCCeEEECCCCEEeccEEecccccCCCC----
Confidence 4568999999997543 3335689999999999998643110 011 2458999999999999999999983210
Q ss_pred cCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC-----HHHHHHHHHHh----CCeEEEec
Q 011766 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-----VSEMAKAVELL----GLRACLVQ 168 (478)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~-----~~~~~~~~~~~----g~~~~~~~ 168 (478)
. ..........+.++.+|||++.+++... ...+....... .+......
T Consensus 74 --------------------~---~~~e~~~~~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~ 130 (429)
T PRK09059 74 --------------------A---EHRETIASASRAAAAGGVTSIIMMPDTDPVIDDVALVEFVKRTARDTAIVNIHPAA 130 (429)
T ss_pred --------------------c---hhhhhHHHHHHHHHhCCcEEEEeccCCCCCCCCHHHHHHHHHHhcccCcccEEEEe
Confidence 0 1112223345678999999999976432 11121111111 12221111
Q ss_pred ccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcC
Q 011766 169 STMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFK 248 (478)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 248 (478)
.+..+ ... +....+..+...+ +..+.. ......+...+.++++.+++.|
T Consensus 131 -~~~~~----------~~~----------------~~l~e~~~l~~~G---v~~f~~-~~~~~~~~~~l~~~~~~~~~~~ 179 (429)
T PRK09059 131 -AITKG----------LAG----------------EEMTEFGLLRAAG---AVAFTD-GRRSVANTQVMRRALTYARDFD 179 (429)
T ss_pred -EEecC----------CCC----------------cchHHHHHHHhcC---cEEEec-CCcccCCHHHHHHHHHHHHhcC
Confidence 00000 000 1111122222221 211111 1112235566888899999999
Q ss_pred CceeEeccCChhhh-----HH-HhhhcCCCCc--h-----H-HHHhhhCCCCCCeeeeeeccCC-hhHHHHHHhcC--Ce
Q 011766 249 TGIHMHVAEIPYEN-----QV-VMDTRKVDHG--T-----V-TFLDKIEFLQNNLLSAHTVWVN-HTEIGLLSRAG--VK 311 (478)
Q Consensus 249 ~~v~~H~~~~~~~~-----~~-~~~~~~~~~~--~-----~-~~l~~~~~~~~~~~i~h~~~~~-~~~~~~~~~~~--~~ 311 (478)
.++.+|+.+..... +. .....+...+ . + ..+......+.+..+.|.+.-. -+.++++++.| +.
T Consensus 180 ~~v~~H~E~~~l~~~~~~~~~~~~~~~~~~~rP~~aE~~av~r~~~la~~~~~~~hi~hvs~~~~~~~i~~ak~~g~~vt 259 (429)
T PRK09059 180 AVIVHETRDPDLGGNGVMNEGLFASWLGLSGIPREAEVIPLERDLRLAALTRGRYHAAQISCAESAEALRRAKDRGLKVT 259 (429)
T ss_pred CEEEEecCChhhhcCCCcCCcHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCHHHHHHHHHHHHCCCCEE
Confidence 99999986643211 00 0000000000 0 1 1222223334556666655421 23445555566 55
Q ss_pred EEECccchhhc-----------cCCCcHH---------HHHHCCCcEEEcCCCCCCCCCc---CHH---------HHHHH
Q 011766 312 VSHCPASAMRM-----------LGFAPIK---------EMLHADICVSLGTDGAPSNNRM---SIV---------DEMYL 359 (478)
Q Consensus 312 ~~~~p~~~~~~-----------~~~~~~~---------~~~~~gv~v~~gsD~~~~~~~~---~~~---------~~~~~ 359 (478)
+.+||.+.... .-.+|+| +.+..|...+++||+.++.... +++ +.+-.
T Consensus 260 ~ev~phhL~l~~~~~~~~~~~~kvnPPLR~~~d~~~L~~~l~~g~id~i~sDh~p~~~~~K~~~~~~~~~G~~gle~~l~ 339 (429)
T PRK09059 260 AGVSINHLSLNENDIGEYRTFFKLSPPLRTEDDRVAMVEAVASGTIDIIVSSHDPQDVDTKRLPFSEAAAGAIGLETLLA 339 (429)
T ss_pred EeecHHHHhccHHHHhccCCccEEcCCCCCHHHHHHHHHHHHcCCCcEEEeCCCCCCHHHCcCChhhCCCCcccHHHHHH
Confidence 67888743211 1123333 5667788999999998763111 111 11111
Q ss_pred HHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCC--------hh
Q 011766 360 ASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHD--------RI 431 (478)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d--------~~ 431 (478)
.+... ....+++++++++++|.|||+++|+ + .|+|++|++||||++|.+.-+....++ |+
T Consensus 340 -~~~~~---------v~~~~l~l~~~~~~~s~nPA~~~gl-~-~G~l~~G~~ADlvl~d~~~~~~v~~~~~~s~~~~sPf 407 (429)
T PRK09059 340 -AALRL---------YHNGEVPLLRLIEALSTRPAEIFGL-P-AGTLKPGAPADIIVIDLDEPWVVDPEDLKSRSKNTPF 407 (429)
T ss_pred -HHHHH---------HHcCCCCHHHHHHHHhHHHHHHhCC-C-cCcccCCCcCCEEEECCCCCEEECcccCccCCCCCCC
Confidence 11110 0123589999999999999999999 3 599999999999999987543332222 33
Q ss_pred hhhhhccCCCCeeEEEEccEEEEE
Q 011766 432 TSLVYCMRTENVVSVMCNGQWVMK 455 (478)
Q Consensus 432 ~~~~~~~~~~~v~~v~v~G~~v~~ 455 (478)
... .-..+|..||++|++||+
T Consensus 408 ~G~---~l~G~v~~ti~~G~~v~~ 428 (429)
T PRK09059 408 EEA---RFQGRVVRTIVAGKTVYE 428 (429)
T ss_pred CCC---EEeeEEEEEEECCEEEee
Confidence 221 123689999999999985
|
|
| >TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=224.20 Aligned_cols=85 Identities=20% Similarity=0.170 Sum_probs=66.2
Q ss_pred CCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEEC
Q 011766 377 PAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKN 456 (478)
Q Consensus 377 ~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~ 456 (478)
+..+|++|+++++|.+||++||+.+ +|+|++|++|||+|+|.++....+ +...+.. ....+.+||++|++|+++
T Consensus 427 ~Re~sL~EI~~mtTanPAkaLGL~d-kG~L~pGa~ADIaI~D~~~~~~~~---~~~~v~~--~~~~v~~Tik~G~vV~~d 500 (556)
T TIGR03121 427 DREYSLYEIAIMTRAGPAKLLGLTD-RGHLGVGADADIAVYDINPDDVDT---DYADVEK--AFSTALYVFKDGEIVVKD 500 (556)
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCC-CCCcCCCCcCCEEEEeCcccccCC---chHHHhh--ccCCccEEEECCEEEEEC
Confidence 4469999999999999999999964 699999999999999986433221 1222211 125799999999999999
Q ss_pred CeeecccHHHH
Q 011766 457 KKILLLMRGRL 467 (478)
Q Consensus 457 g~~~~~~~~~~ 467 (478)
|+++....|+.
T Consensus 501 Gei~~~~~G~~ 511 (556)
T TIGR03121 501 GEIVETPWGRT 511 (556)
T ss_pred CEEccCCCCcE
Confidence 99987665543
|
Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably. |
| >PRK08417 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-27 Score=226.15 Aligned_cols=330 Identities=14% Similarity=0.154 Sum_probs=190.4
Q ss_pred EEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCCCCchHHhhhccccccCCCChHH
Q 011766 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEED 122 (478)
Q Consensus 43 v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (478)
|+|+||||++|++.. .+.++||++|++|+|||||+|+|+.. +.+.
T Consensus 1 i~I~dG~I~~i~~~~--------~~~~viDa~g~~vlPG~ID~HvH~~~------------------------~~~~--- 45 (386)
T PRK08417 1 IRIKDGKITEIGSDL--------KGEEILDAKGKTLLPALVDLNVSLKN------------------------DSLS--- 45 (386)
T ss_pred CEEECCEEEEecCCC--------CCCeEEECCCCEEccCeeEEeeeeCC------------------------CCcC---
Confidence 589999999998642 24689999999999999999999832 0111
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCccCH-----HHHHHHHHHhCC--eEEEecccccCCCCCCCcccccCCcccCCCCCC
Q 011766 123 SYISTLLCGIELIHSGVTCFAEAGGQHV-----SEMAKAVELLGL--RACLVQSTMDCGEGLPASWAVRTTDDCIQPDSS 195 (478)
Q Consensus 123 ~~~~~~~~~~~~l~~GvTtv~~~~~~~~-----~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (478)
........+.++++||||+++++...+ .......+..+- ..+...... . ...
T Consensus 46 -~e~~~t~s~aA~aGGvTtv~dmpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~-------- 104 (386)
T PRK08417 46 -SKNLKSLENECLKGGVGSIVLYPDSTPAIDNEIALELINSAQRELPMQIFPSIRA-----------L-DED-------- 104 (386)
T ss_pred -hhhHHHHHHHHHcCCcEEEEeCCCCCCCCCCHHHHHHHHHHhhccCCcEEEEEEE-----------E-CCC--------
Confidence 122244567789999999999874321 122111121111 111110000 0 000
Q ss_pred ccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhh------hc
Q 011766 196 ISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD------TR 269 (478)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~------~~ 269 (478)
...+.+..+...+...++ . ....+.+.+.++++.+++.|+++.+|+.+.......... ..
T Consensus 105 --------~~~~~i~~l~~~Gv~~~k--~----~~~~~~~~l~~~~~~a~~~g~~V~~HaEd~~~~~~~~~~~g~~~~~~ 170 (386)
T PRK08417 105 --------GKLSNIATLLKKGAKALE--L----SSDLDANLLKVIAQYAKMLDVPIFCRCEDSSFDDSGVMNDGELSFEL 170 (386)
T ss_pred --------ccHHHHHHHHHCCCEEEE--C----CCCCCHHHHHHHHHHHHHcCCEEEEeCCCHHHhhHHHHhcChhhHHh
Confidence 112223333333322222 1 114577889999999999999999999774322111100 00
Q ss_pred CCCCc--------hHHHHhhhCCCCCCeeeeeeccCC-hhHHHHHHhcC--CeEEECccchhhc-----------cCCCc
Q 011766 270 KVDHG--------TVTFLDKIEFLQNNLLSAHTVWVN-HTEIGLLSRAG--VKVSHCPASAMRM-----------LGFAP 327 (478)
Q Consensus 270 ~~~~~--------~~~~l~~~~~~~~~~~i~h~~~~~-~~~~~~~~~~~--~~~~~~p~~~~~~-----------~~~~~ 327 (478)
....+ ....+......+.+..+.|.+.-. -+.++.+++.| +...+||.+.... .-.+|
T Consensus 171 ~~~~rp~~aE~~~v~~~~~la~~~~~~lhi~hvS~~~~~~~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PP 250 (386)
T PRK08417 171 GLPGIPSIAETKEVAKMKELAKFYKNKVLFDTLALPRSLELLDKFKSEGEKLLKEVSIHHLILDDSACENFNTAAKLNPP 250 (386)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCCEEEEechHHHeeCHHHhcCcCcccEECCC
Confidence 00000 011233333445566666666421 12344445555 5568888753211 11223
Q ss_pred HH---------HHHHCCCcEEEcCCCCCCCCCc---CHHH--------HHHHHHHHhcccccccCCCCCCCCCCHHHHHH
Q 011766 328 IK---------EMLHADICVSLGTDGAPSNNRM---SIVD--------EMYLASLINKGREVFANGTTDPAALPAETVLR 387 (478)
Q Consensus 328 ~~---------~~~~~gv~v~~gsD~~~~~~~~---~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~ 387 (478)
+| +.+..|...+++|||.|+.... +++. +.....+... .....+++++++++
T Consensus 251 lR~~~d~~~L~~~l~~g~Id~i~SDHaP~~~~~K~~~~~~a~~G~~g~e~~~~~~~~~--------~v~~~~~~~~~~~~ 322 (386)
T PRK08417 251 LRSKEDRLALLEALKEGKIDFLTSLHSAKSNSKKDLAFDEAAFGIDSICEYFSLCYTY--------LVKEGIITWSELSR 322 (386)
T ss_pred CCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHccCCHhHCCCCchHHHHHHHHHHHH--------HHhcCCCCHHHHHH
Confidence 33 5677899999999998873111 1121 1111111110 01123589999999
Q ss_pred HHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCC-cCChhhhhhhccCCCCeeEEEEccEEEEE
Q 011766 388 MATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVP-VHDRITSLVYCMRTENVVSVMCNGQWVMK 455 (478)
Q Consensus 388 ~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~-~~d~~~~~~~~~~~~~v~~v~v~G~~v~~ 455 (478)
++|.|||++||+. + |+|++|++|||+++|.+..+..+ ..+|+..... ..+|..||++|++||+
T Consensus 323 ~~t~~pA~~lgl~-~-G~l~~G~~ADlvi~d~~~~~~~~~~~~p~~g~~~---~g~v~~tiv~G~~v~~ 386 (386)
T PRK08417 323 FTSYNPAQFLGLN-S-GEIEVGKEADLVLFDPNESTIIDDNFSLYSGDEL---YGKIEAVIIKGKLYLE 386 (386)
T ss_pred HHHHHHHHHhCCC-C-CccCCCCcCCEEEEcCCCCeEeCCCCCCccCCEE---eccEEEEEECCEEEeC
Confidence 9999999999994 4 99999999999999998544333 2345443222 2579999999999974
|
|
| >cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=226.12 Aligned_cols=339 Identities=25% Similarity=0.247 Sum_probs=197.0
Q ss_pred eEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCC
Q 011766 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (478)
Q Consensus 21 ~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~ 100 (478)
++|+|++|+++ ....+++|+|++|+|+.|++..+.+ ...++||++|++|+|||||+|+|.....
T Consensus 1 ~~i~~~~v~~~----~~~~~~~i~i~~g~I~~i~~~~~~~-----~~~~vid~~g~~l~PG~iD~H~H~~~g~------- 64 (374)
T cd00854 1 LIIKNARILTP----GGLEDGAVLVEDGKIVAIGPEDELE-----EADEIIDLKGQYLVPGFIDIHIHGGGGA------- 64 (374)
T ss_pred CEEEeEEEeCC----CEEcccEEEEECCEEEEecCCCCcc-----cCCcEEECCCCEecccEEEeeecccCCC-------
Confidence 47999999953 3557789999999999998754321 2358999999999999999999984210
Q ss_pred CCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCH-HHH-------HHHHHHh-CCeEEEecccc
Q 011766 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHV-SEM-------AKAVELL-GLRACLVQSTM 171 (478)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~-~~~-------~~~~~~~-g~~~~~~~~~~ 171 (478)
++ . ... ........+.++++|||+++++..... ... .+..+.. |.+.+ + ..
T Consensus 65 -~~-----------~-~~~----~e~~~~~~~~~~~~GvTtv~~t~~t~~~~~~~~~l~~~~~~~~~~~g~~~~-g--~h 124 (374)
T cd00854 65 -DF-----------M-DGT----AEALKTIAEALAKHGTTSFLPTTVTAPPEEIAKALAAIAEAIAEGQGAEIL-G--IH 124 (374)
T ss_pred -CC-----------C-CCC----HHHHHHHHHHHHccCcceeeccccCCCHHHHHHHHHHHHHHhhcCCCCeeE-E--Ee
Confidence 00 0 011 122233456789999999999763222 211 1111111 22221 1 12
Q ss_pred cCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHH--HHHHHHHHHcCC
Q 011766 172 DCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLL--LETRDMAREFKT 249 (478)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~a~~~~~ 249 (478)
..|+.+..........+... ....+.++++.....+.++++ +..+|.. .++++.++++|+
T Consensus 125 leGP~~~~~~~g~h~~~~~~-----------~~~~~~~~~~~~~~~~~ik~~-------tlaPE~~~~~~~i~~~~~~gi 186 (374)
T cd00854 125 LEGPFISPEKKGAHPPEYLR-----------APDPEELKKWLEAAGGLIKLV-------TLAPELDGALELIRYLVERGI 186 (374)
T ss_pred eecCccCcccCCCCCHHHcC-----------CcCHHHHHHHHHhcCCCEEEE-------EECCCCCChHHHHHHHHHCCe
Confidence 23333322211111111111 012233444444444667765 2344444 678899999999
Q ss_pred cee-EeccCChhh-hHH-HhhhcCCCC----------c---hHH-HHhhhCCCCCCeeeeeeccCChhHHHHHHhcC--C
Q 011766 250 GIH-MHVAEIPYE-NQV-VMDTRKVDH----------G---TVT-FLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAG--V 310 (478)
Q Consensus 250 ~v~-~H~~~~~~~-~~~-~~~~~~~~~----------~---~~~-~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~--~ 310 (478)
.+. -|....... .+. ........| + ... .+..-.. .-.+|.|+.|++++.++.+.+.. -
T Consensus 187 ~v~~GH~~a~~~~~~~a~~~G~~~~tH~~n~m~~~~~r~~~~~~a~l~~~~~--~~~li~dg~Hv~~~~~~~~~r~~g~~ 264 (374)
T cd00854 187 IVSIGHSDATYEQAVAAFEAGATHVTHLFNAMSPLHHREPGVVGAALSDDDV--YAELIADGIHVHPAAVRLAYRAKGAD 264 (374)
T ss_pred EEEeeCCcCCHHHHHHHHHcCCCeeeECCCCCCCcCCCCCcHHHHhhcCCCC--eEEEEcCCCcCCHHHHHHHHHhcCCC
Confidence 995 787644211 111 111111111 1 111 1111000 01278899999999999999885 3
Q ss_pred eEEECccchhhc---cCCCcHHHH--HHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHH
Q 011766 311 KVSHCPASAMRM---LGFAPIKEM--LHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETV 385 (478)
Q Consensus 311 ~~~~~p~~~~~~---~~~~~~~~~--~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 385 (478)
.+..++..+... .+.+++... ...+-.+.+.++. ..++..++.+.++..... .++|++++
T Consensus 265 ~~~lvtD~~~~~G~~~g~y~~~~~~~~~~~~~~~~~~g~-laG~~~~l~~~~~~l~~~--------------~~l~~~~a 329 (374)
T cd00854 265 KIVLVTDAMAAAGLPDGEYELGGQTVTVKDGVARLADGT-LAGSTLTMDQAVRNMVKW--------------GGCPLEEA 329 (374)
T ss_pred cEEEEeccccccCCCCCeEEECCEEEEEECCEEEcCCCC-eeehHhhHHHHHHHHHHh--------------hCCCHHHH
Confidence 455555443322 122232211 0112233344443 223445677776654432 24899999
Q ss_pred HHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEcc
Q 011766 386 LRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNG 450 (478)
Q Consensus 386 l~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G 450 (478)
++++|.|||+.+|++++.|.|++|+.|||+++|.+ ..+..||++|
T Consensus 330 l~~aT~npA~~lg~~~~~G~i~~G~~ADlvv~d~~--------------------~~v~~~~~~G 374 (374)
T cd00854 330 VRMASLNPAKLLGLDDRKGSLKPGKDADLVVLDDD--------------------LNVKATWING 374 (374)
T ss_pred HHHHhHHHHHHcCCCCCcCCcCCCCcCCEEEECCC--------------------CcEEEEEeCc
Confidence 99999999999999877899999999999999996 5899999887
|
This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling. |
| >PRK01211 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-27 Score=225.53 Aligned_cols=355 Identities=13% Similarity=0.101 Sum_probs=192.2
Q ss_pred EEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCCC
Q 011766 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDV 101 (478)
Q Consensus 22 ~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~~ 101 (478)
.|+|..+. ++ ....++|+|+||||++|++.. .++++||++| +|+|||||+|+|+...
T Consensus 2 ~~~~~~~~--~~---~~~~~di~I~dGkI~~i~~~~--------~~~~~ida~g-~vlPG~ID~HvH~r~p--------- 58 (409)
T PRK01211 2 AICGNFYY--KG---KFDYLEIEVEDGKIKSIKKDA--------GNIGKKELKG-AILPAATDIHVHFRTP--------- 58 (409)
T ss_pred eeeceeEE--cC---cEEEEEEEEECCEEEEecCCC--------CCceEEEecc-EEcCCeEEeeeccCCC---------
Confidence 46655444 22 234579999999999998643 1457899999 9999999999998331
Q ss_pred CchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC-----HHHHHHHHHHhCCeEEEecccccCCCC
Q 011766 102 DLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-----VSEMAKAVELLGLRACLVQSTMDCGEG 176 (478)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~ 176 (478)
.+...+ ......++++++|||++++++... ...+....+...-...+.........
T Consensus 59 ---------------g~~~ke---d~~s~s~AAaaGGvTtv~dmPnt~P~~~~~e~~~~~~~~a~~~s~vd~~~~~~~~- 119 (409)
T PRK01211 59 ---------------GETEKE---DFSTGTLSAIFGGTTFIMDMPNNNIPIKDYNAFSDKLGRVAPKAYVDFSLYSMET- 119 (409)
T ss_pred ---------------CCcccC---cHHHHHHHHHcCCcEEEEECCCCCCCCChHHHHHHHHHHhccCceeeEEEEeccC-
Confidence 111111 223345678999999999986421 22222222222222222221111100
Q ss_pred CCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEecc
Q 011766 177 LPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVA 256 (478)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~ 256 (478)
. ...+ +.. .+...++.+.... ............++.+.+.|..+.+|+.
T Consensus 120 ----------~----------------~~~~-~~~---~g~~~~k~f~~~~-~~~~~~~~~~~~l~~~~~~g~~v~~H~E 168 (409)
T PRK01211 120 ----------G----------------NNAL-ILD---ERSIGLKVYMGGT-TNTNGTDIEGGEIKKINEANIPVFFHAE 168 (409)
T ss_pred ----------C----------------chhh-HHh---ccCcEEEEEcCCC-cCCCccccCHHHHHHHHccCCEEEEecc
Confidence 0 0011 111 1223344332211 0010001122244556688999999997
Q ss_pred CChhhhH-----HHhhhcCCCCch-HH---HHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-----
Q 011766 257 EIPYENQ-----VVMDTRKVDHGT-VT---FLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM----- 322 (478)
Q Consensus 257 ~~~~~~~-----~~~~~~~~~~~~-~~---~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----- 322 (478)
+..-... .....+...... .+ ..........+..+.|.+. .+.+ ..+.+.+||.+....
T Consensus 169 ~~~l~~~~~~~~~~~~~~~~~rP~~aE~~ai~~~~~la~~~~hi~HvSt--~~~~-----~~vt~Ev~phhL~l~~~~~~ 241 (409)
T PRK01211 169 LSECLRKHQFESKNLRDHDLARPIECEIKAVKYVKNLDLKTKIIAHVSS--IDVI-----GRFLREVTPHHLLLNDDMPL 241 (409)
T ss_pred ChHHhhhhhhCcchHhhCCCCCCHHHHHHHHHHHHHHhCCCcEEEEecC--hhhc-----CceEEEecHHHHcccccccc
Confidence 6442211 000000000001 11 1111122222444555553 2223 257778888754311
Q ss_pred ----cCCCcH---------HHHHHCCCcEEEcCCCCCCCCCc--CHH---------HHHHHHHHHhcccccccCCCCCCC
Q 011766 323 ----LGFAPI---------KEMLHADICVSLGTDGAPSNNRM--SIV---------DEMYLASLINKGREVFANGTTDPA 378 (478)
Q Consensus 323 ----~~~~~~---------~~~~~~gv~v~~gsD~~~~~~~~--~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 378 (478)
.-.+|+ .+.+..|...+++|||.|+.... +++ +.+ ...+.. ...+.
T Consensus 242 ~~~~kvnPPLRs~~d~~aL~~~l~dG~ID~i~SDHaP~~~~eK~~~~~a~~G~~gle~~-lpl~~~---------~v~~~ 311 (409)
T PRK01211 242 GSYGKVNPPLRDRWTQERLLEEYISGRFDILSSDHAPHTEEDKQEFEYAKSGIIGVETR-VPLFLA---------LVKKK 311 (409)
T ss_pred CCceeEcCCCCCHHHHHHHHHHHhCCCCCEEeCCCCCCChhHhCCHhhCCCCCCcHHHH-HHHHHH---------HHHcC
Confidence 112233 36677899999999998763111 111 111 111111 01234
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhh-----hhhhccCCCCeeEEEEccEEE
Q 011766 379 ALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRIT-----SLVYCMRTENVVSVMCNGQWV 453 (478)
Q Consensus 379 ~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~-----~~~~~~~~~~v~~v~v~G~~v 453 (478)
++|++++++++|.|||++||+ + +|+|++|++|||||+|.+..+....++..+ -+... ...++.+||++|+++
T Consensus 312 ~isl~~~v~~~s~nPAki~gl-~-kG~l~~G~~ADlvi~D~~~~~~v~~~~~~s~~~~spf~G~-~~~~v~~tiv~G~~v 388 (409)
T PRK01211 312 ILPLDVLYKTAIERPASLFGI-K-KGKIEEGYDADFMAFDFTNIKKINDKRLHSKCPVSPFNGF-DAIFPSHVIMRGEVV 388 (409)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-C-CCcccCCCcCCEEEEcCCCeEEEChHHhhccCCCCCCCCC-EeccEEEEEECCEEE
Confidence 699999999999999999999 3 699999999999999998544332221111 11011 112799999999999
Q ss_pred EECCeeecccHHHHHH
Q 011766 454 MKNKKILLLMRGRLFQ 469 (478)
Q Consensus 454 ~~~g~~~~~~~~~~~~ 469 (478)
|+++++.+.+.|++++
T Consensus 389 ~~~~~~~~~~~G~~~~ 404 (409)
T PRK01211 389 IDNYELISERTGKFVP 404 (409)
T ss_pred EECCEEccccCceEec
Confidence 9999887655666653
|
|
| >PRK10027 cryptic adenine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-26 Score=224.34 Aligned_cols=333 Identities=17% Similarity=0.203 Sum_probs=191.7
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~ 96 (478)
.+.+++|+|++|+++.. .....++|+|++|+|++|++.... ..+.++||++|++|+|||||+|+|+..+
T Consensus 28 ~~~dllI~ng~vv~~~~--~~~~~~~V~I~~GrI~~Vg~~~~~-----~~~~~vIDa~G~~v~PGlIDaHvHiess---- 96 (588)
T PRK10027 28 AVADYIIDNVSILDLIN--GGEISGPIVIKGRYIAGVGAEYAD-----APALQRIDARGATAVPGFIDAHLHIESS---- 96 (588)
T ss_pred CCCCEEEECcEEEeCCC--CcEEeeEEEEECCEEEEeCCCCCC-----CCCCeEEECCCCEEEECeEeccccCCcc----
Confidence 45678999999997532 234557999999999999764221 1245899999999999999999999421
Q ss_pred ccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc--------CHHHHHHHHHHhCCeEEEec
Q 011766 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------HVSEMAKAVELLGLRACLVQ 168 (478)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~--------~~~~~~~~~~~~g~~~~~~~ 168 (478)
+.....+. ..++.+|+||+++.+.. ...-+.+.....++..+...
T Consensus 97 ---------------------~~~p~~~a------~aal~~G~TtVv~dPhei~nv~g~~gi~~~l~~a~~~p~~~~~~~ 149 (588)
T PRK10027 97 ---------------------MMTPVTFE------TATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQV 149 (588)
T ss_pred ---------------------cCCHhHHH------HHHHhCceEEEEcCCCCcccCCCHHHHHHHHHHhhhCCCeeEEee
Confidence 11112222 23789999999984321 12233444455565554332
Q ss_pred ccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcC
Q 011766 169 STMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFK 248 (478)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 248 (478)
+ .+.+..+. .+..... +...+..++++.-. .-.+.-+..+.+.....++.+.++... .+
T Consensus 150 p--s~vpa~~~---~Et~Ga~----------~~~~~~~~~l~~~~---v~glgEvMn~~~V~~~d~~~~~ki~~~---~~ 208 (588)
T PRK10027 150 S--SCVPALEG---CDVNGAS----------FTLEQMLAWRDHPQ---VTGLAEMMDYPGVISGQNALLDKLDAF---RH 208 (588)
T ss_pred c--ccCcCCcc---cccCCCc----------CCHHHHHHHhcCCC---ceeEEeccCccccccCCHHHHHHHHHh---CC
Confidence 1 12211110 0111111 11224444443211 111111133344445667777777643 78
Q ss_pred CceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhccCCCcH
Q 011766 249 TGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPI 328 (478)
Q Consensus 249 ~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 328 (478)
..+.-|+...... ....+...+.. -.|-....++.+++ .+.|..+.+.-.+..+ ....+
T Consensus 209 ~~idGH~p~l~g~-------------~L~ay~aaGi~-----sDHE~~t~eea~ek-lr~Gm~v~iRegS~~~--nl~~l 267 (588)
T PRK10027 209 LTLDGHCPGLGGK-------------ELNAYIAAGIE-----NCHESYQLEEGRRK-LQLGMSLMIREGSAAR--NLNAL 267 (588)
T ss_pred CceECCCCCCChH-------------HHHHHHHcCCC-----CCcccCCHHHHHHH-HHCCCEEEEeCCcccc--CHHHH
Confidence 8999998754321 11222233322 23545433444444 5678777655443211 11222
Q ss_pred HHHHHC-C-CcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCcccc
Q 011766 329 KEMLHA-D-ICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSL 406 (478)
Q Consensus 329 ~~~~~~-g-v~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l 406 (478)
..++.. . -.++|+||.... .++.++-+......... ...|+++++|++++|.|||+.+|+++ +|+|
T Consensus 268 ~~~~~~~~~~~~~l~TDd~~~---~~l~~~Ghi~~~vr~av--------~~~Gi~~~~Ai~mAT~nPA~~lgl~d-~G~I 335 (588)
T PRK10027 268 APLINEFNSPQCMLCTDDRNP---WEIAHEGHIDALIRRLI--------EQHNVPLHVAYRVASWSTARHFGLNH-LGLL 335 (588)
T ss_pred HHHhhccCCCeEEEEcCCCCh---HHHHhccCHHHHHHHHH--------HHcCCCHHHHHHHHHHHHHHHcCCCC-Cccc
Confidence 222221 1 367999997432 12222111111111100 11369999999999999999999964 7999
Q ss_pred ccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeee
Q 011766 407 EAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKIL 460 (478)
Q Consensus 407 ~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~ 460 (478)
++|+.|||+++|.. ....+..||++|++|+++ +.+
T Consensus 336 apG~~ADlvvld~l------------------~~~~v~~v~~~G~~v~~~-~~~ 370 (588)
T PRK10027 336 APGKQADIVLLSDA------------------RKVTVQQVLVKGEPIDAQ-TLQ 370 (588)
T ss_pred CCCCcCCEEEEccC------------------CCceEEEEEECCEEeecc-ccc
Confidence 99999999999963 125799999999999997 654
|
|
| >COG3964 Predicted amidohydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=198.51 Aligned_cols=319 Identities=19% Similarity=0.218 Sum_probs=191.6
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~ 96 (478)
.+.+++++|++++++- ..+-+..+|.|.||||+++++ .+.+ .+.++||++|++|.||+||.|+|++.....
T Consensus 2 mqfdiLLt~~rlidpa--~g~d~~tniai~ngkIaa~~d-~~ap-----a~tq~Ida~Gc~VspG~iDlHvHvy~ggt~- 72 (386)
T COG3964 2 MQFDILLTGGRLIDPA--RGIDEITNIAIINGKIAAADD-YPAP-----AETQIIDADGCIVSPGLIDLHVHVYYGGTE- 72 (386)
T ss_pred CccceeeeCCeecccc--cccCccceeeeecCeEEeccC-cCCC-----hhheEEccCccEeccCeeeeeeEEecCCCc-
Confidence 4679999999999642 223344599999999999994 3322 356899999999999999999999642211
Q ss_pred ccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCH---HHHHHHH-HHh--CCeEEEeccc
Q 011766 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHV---SEMAKAV-ELL--GLRACLVQST 170 (478)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~---~~~~~~~-~~~--g~~~~~~~~~ 170 (478)
....+ +.+ ...+||||++|.|+... ..+.+.. +.. .+.+++..
T Consensus 73 -------------------~~v~p-d~~---------ga~~GvTTvVDAGSaGaanf~gF~r~vie~Sr~RI~Aflnv-- 121 (386)
T COG3964 73 -------------------GGVRP-DMY---------GAPNGVTTVVDAGSAGAANFDGFYRTVIEASRVRIKAFLNV-- 121 (386)
T ss_pred -------------------cCcCH-HHc---------cccCCceEEEecCCcCccchhhHHHHhhcchhheeeeeeec--
Confidence 11111 211 45789999999875432 2222221 222 23333221
Q ss_pred ccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCC-CeEEEEeccccccCCHHHHHHHHHHHHHcCC
Q 011766 171 MDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADG-RIRIWFGIRQIMNATDRLLLETRDMAREFKT 249 (478)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~ 249 (478)
...|...... -.....++ .....+.+++..+.-.+ .++......+.+..+ -++...+.++..++
T Consensus 122 s~~Gl~a~nE---~~d~~nid----------~d~i~aa~reh~d~ivGlKvR~s~~~~g~~Git--Pl~la~~ia~~~kl 186 (386)
T COG3964 122 SPPGLTASNE---LYDPDNID----------EDKIHAAFREHRDVIVGLKVRVSTEDIGEYGIT--PLTLALRIANDLKL 186 (386)
T ss_pred cCcceeeehh---hCChhhCC----------HHHHHHHHHhCcCcEEEEEEEeeeccccccCCc--hHHHHHHHHhhcCC
Confidence 1111100000 00011111 11344444444332111 111112222333343 46677888999999
Q ss_pred ceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCC-----------hhHHHHHHhcCCeEEECccc
Q 011766 250 GIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN-----------HTEIGLLSRAGVKVSHCPAS 318 (478)
Q Consensus 250 ~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~-----------~~~~~~~~~~~~~~~~~p~~ 318 (478)
|+++|..+.......++.. +...-++.||.+-- ...++++++.|+.++.....
T Consensus 187 PlmvHigePp~~~dEvler----------------L~~GDIitHcfngkpn~~l~~dg~vr~~vrra~erGV~fD~ghG~ 250 (386)
T COG3964 187 PLMVHIGEPPVLMDEVLER----------------LRRGDIITHCFNGKPNTILTDDGVVRAEVRRARERGVIFDAGHGR 250 (386)
T ss_pred ceEEecCCCCccHHHHHHh----------------ccCCceeeeeccCCCCCccccchhHHHHHHHHHhcceEEEccCCc
Confidence 9999999976655444332 23345678887632 24578888899888765432
Q ss_pred hhhccCCCcHHHHHHCC-CcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHc
Q 011766 319 AMRMLGFAPIKEMLHAD-ICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSV 397 (478)
Q Consensus 319 ~~~~~~~~~~~~~~~~g-v~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~l 397 (478)
. ...+.-.++++..| .+..++||-...+ .++ +.....++..++. -.-||++.+.++++|.|||..+
T Consensus 251 a--sfsf~vAr~aia~GllP~~ISSDlh~~~-~~n-~Pv~dla~~mSKl---------lalgmpl~~Vi~avT~npA~~i 317 (386)
T COG3964 251 A--SFSFNVARRAIANGLLPDIISSDLHTIT-KLN-GPVYDLAWIMSKL---------LALGMPLTDVINAVTHNPAVLI 317 (386)
T ss_pred c--eeeHHHHHHHHhcCCCcceeeccceeee-ecC-chHHHHHHHHHHH---------HHcCCcHHHHHHHHhcCHHHHh
Confidence 2 12244567889999 6899999964321 111 1111122222210 1236999999999999999999
Q ss_pred CCCCCccccccCccccEEEEcCC
Q 011766 398 LWDNDIGSLEAGKKADMVVVDPF 420 (478)
Q Consensus 398 gl~~~~G~l~~G~~ADlvv~d~~ 420 (478)
++. .+|+|+||..|||+||+..
T Consensus 318 ~l~-~~gtLa~G~~aD~tvf~lk 339 (386)
T COG3964 318 GLA-EIGTLAPGAFADITVFKLK 339 (386)
T ss_pred Ccc-ccCccCCCcccceEEEEec
Confidence 995 6899999999999999874
|
|
| >PRK07369 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-26 Score=221.22 Aligned_cols=335 Identities=16% Similarity=0.123 Sum_probs=187.1
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccc
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~ 97 (478)
|.+++|+|++|+++.+ .....++|+|+||+|++|++.... +..+.++||++|++|+|||||+|+|+...
T Consensus 1 ~~~~~i~n~~v~d~~~--~~~~~~~v~I~dg~I~~i~~~~~~----~~~~~~~iDa~G~~vlPG~ID~H~H~~~~----- 69 (418)
T PRK07369 1 MSNELLQQVRVLDPVS--NTDRIADVLIEDGKIQAIEPHIDP----IPPDTQIIDASGLILGPGLVDLYSHSGEP----- 69 (418)
T ss_pred CCCEEEeCeEEECCCC--CcccceeEEEECCEEEEecCCccc----CCCCCEEEECCCCEEecCEEecccccCCC-----
Confidence 3578999999995432 233667999999999999864321 11356899999999999999999998321
Q ss_pred cCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC-----HHHHHHHHHHhCCeEEEeccccc
Q 011766 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-----VSEMAKAVELLGLRACLVQSTMD 172 (478)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~ 172 (478)
.+...+ ......+.++++|||++.+++... ...+....+...-..++......
T Consensus 70 -------------------~~~~~e---~~~s~~~aa~~GGvTtv~~~pn~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~ 127 (418)
T PRK07369 70 -------------------GFEERE---TLASLAAAAAAGGFTRVAILPDTFPPLDNPATLARLQQQAQQIPPVQLHFWG 127 (418)
T ss_pred -------------------CcCCCc---cHHHHHHHHHhCCceEEEECCCCCCCCCCHHHHHHHHHHhcccCceeEEEEE
Confidence 011111 112234668999999999986321 22222222221111111100000
Q ss_pred CCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCcee
Q 011766 173 CGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIH 252 (478)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~ 252 (478)
. +... ....... +..++ ...+ ...+ . ..........+.+.++.+++.|.++.
T Consensus 128 ~---~~~~----~~~~~~~------------ei~~l----~~~G--v~~f-~--~~~~~~~~~~l~~~~~~~~~~~~~v~ 179 (418)
T PRK07369 128 A---LTLG----GQGKQLT------------ELAEL----AAAG--VVGF-T--DGQPLENLALLRRLLEYLKPLGKPVA 179 (418)
T ss_pred E---EeeC----CCCccHh------------hHHHH----HHCC--CEEE-E--CCCcCCCHHHHHHHHHHHHhcCCeEE
Confidence 0 0000 0000011 22222 2222 2211 1 11222355678888899999999999
Q ss_pred EeccCChhhhHHH------hhhcCCCC--c------hHHHHhhhCCCCCCeeeeeeccC-ChhHHHHHHhcC--CeEEEC
Q 011766 253 MHVAEIPYENQVV------MDTRKVDH--G------TVTFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAG--VKVSHC 315 (478)
Q Consensus 253 ~H~~~~~~~~~~~------~~~~~~~~--~------~~~~l~~~~~~~~~~~i~h~~~~-~~~~~~~~~~~~--~~~~~~ 315 (478)
+|+.+........ ........ . ....+......+.+..+.|.+.- +-+.++.+++.| +.+.+|
T Consensus 180 ~H~Ed~~l~~~~~~~~g~~~~~~~~~~~p~~aE~~av~r~~~la~~~~~~~hi~HvSs~~~~~~i~~ak~~g~~vt~Ev~ 259 (418)
T PRK07369 180 LWPCDRSLAGNGVMREGLLALRLGLPGDPASAETTALAALLELVAAIGTPVHLMRISTARSVELIAQAKARGLPITASTT 259 (418)
T ss_pred EecCChhhhhcCcccCChhHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHHHHHHHHHHHcCCCeEEEec
Confidence 9997644311000 00000000 0 01222333344566777776642 123445555555 567888
Q ss_pred ccchhhc-----------cCCCcH---------HHHHHCCCcEEEcCCCCCCCCCc---CHHH--------HHHHHHHHh
Q 011766 316 PASAMRM-----------LGFAPI---------KEMLHADICVSLGTDGAPSNNRM---SIVD--------EMYLASLIN 364 (478)
Q Consensus 316 p~~~~~~-----------~~~~~~---------~~~~~~gv~v~~gsD~~~~~~~~---~~~~--------~~~~~~~~~ 364 (478)
|.+.... .-.+|+ .+.+..|...+++|||.|+.... +++. +..+.....
T Consensus 260 phhL~l~~~~~~~~~~~~kv~PPLR~~~d~~aL~~~l~~G~Id~i~SDHaP~~~~~K~~~~~~~~~G~~G~e~~l~~~~~ 339 (418)
T PRK07369 260 WMHLLLDTEALASYDPNLRLDPPLGNPSDRQALIEGVRTGVIDAIAIDHAPYTYEEKTVAFAEAPPGAIGLELALPLLWQ 339 (418)
T ss_pred HHHHhccHHHHhccCCCcEECCCCCCHHHHHHHHHHHhcCCCCEEEcCCCCCCHHHccCCHhHCCCCceeHHHHHHHHHH
Confidence 8854311 111333 36678899999999998874211 1110 111111111
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCC
Q 011766 365 KGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWP 423 (478)
Q Consensus 365 ~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~ 423 (478)
.. ....+++++++++++|.|||++||+. .|.|++|++|||+++|.+.-+
T Consensus 340 ~~--------v~~~~i~l~~~v~~~s~nPA~~lgl~--~G~i~~G~~ADlvi~d~~~~~ 388 (418)
T PRK07369 340 NL--------VETGELSALQLWQALSTNPARCLGQE--PPSLAPGQPAELILFDPQKTW 388 (418)
T ss_pred HH--------HHcCCCCHHHHHHHHHHhHHHHhCCC--cCcccCCCcCCEEEEcCCCCE
Confidence 00 01235999999999999999999994 499999999999999987443
|
|
| >TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=224.94 Aligned_cols=350 Identities=17% Similarity=0.143 Sum_probs=190.3
Q ss_pred ecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCCCCchHHhhhccccccCCC
Q 011766 39 RNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNM 118 (478)
Q Consensus 39 ~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (478)
..++|+|+||||++|++.. . ..+.++||++|++|+|||||+|+|+... . .
T Consensus 4 ~~~~v~I~~g~I~~i~~~~-~-----~~~~~~ida~g~~v~PG~ID~H~H~~~~-----------------------~-~ 53 (411)
T TIGR00857 4 TEVDILVEGGRIKKIGKLR-I-----PPDAEVIDAKGLLVLPGFIDLHVHLRDP-----------------------G-E 53 (411)
T ss_pred EEEEEEEECCEEEEeeccC-C-----CCCCeEEECCCCEEecCEEEcccCCCCC-----------------------C-C
Confidence 4579999999999997421 1 1245799999999999999999998310 0 0
Q ss_pred ChHHHHHHHHHHHHHHHhcCcceeecCCccC-----HHHHHHHHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCC
Q 011766 119 TEEDSYISTLLCGIELIHSGVTCFAEAGGQH-----VSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPD 193 (478)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (478)
. ...........++.+|||+++++.... ...+....+...-.......... ++... ....
T Consensus 54 ~---~~~~~~~~~~~~~~~GvTtv~~~~~t~p~~~~~~~l~~~~~~~~~~~~vd~~~~~---~~~~~----~~~~----- 118 (411)
T TIGR00857 54 E---YKEDIESGSKAAAHGGFTTVADMPNTKPPIDTPETLEWKLQRLKKVSLVDVHLYG---GVTQG----NQGK----- 118 (411)
T ss_pred c---cHhHHHHHHHHHHhCCeEEEEEecCCCCCCCcHHHHHHHHHHhccCCcccEEEEE---EEecC----Cccc-----
Confidence 0 112223344568999999999975321 12222222221111111100000 00000 0000
Q ss_pred CCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhh------
Q 011766 194 SSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD------ 267 (478)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~------ 267 (478)
...+ +..+...+ .....+.....+..+...+.++++.++++|+++.+|+.+..-.......
T Consensus 119 ----------~l~e-~~~l~~~G--v~g~~f~~~~~~~~~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~g~~~~ 185 (411)
T TIGR00857 119 ----------ELTE-AYELKEAG--AVGRMFTDDGSEVQDILSMRRALEYAAIAGVPIALHAEDPDLIYGGVMHEGPSAA 185 (411)
T ss_pred ----------cHHH-HHHHHHCC--cEEEEEEeCCcccCCHHHHHHHHHHHHHcCCEEEEecCCHHHHhhhhhcCCcccH
Confidence 1111 12222222 1110011112223567889999999999999999999764322111000
Q ss_pred -hcCCC-Cc-----h-HHHHhhhCCCCCCeeeeeeccCC-hhHHHHHHhcC--CeEEECccchhhc-----------cCC
Q 011766 268 -TRKVD-HG-----T-VTFLDKIEFLQNNLLSAHTVWVN-HTEIGLLSRAG--VKVSHCPASAMRM-----------LGF 325 (478)
Q Consensus 268 -~~~~~-~~-----~-~~~l~~~~~~~~~~~i~h~~~~~-~~~~~~~~~~~--~~~~~~p~~~~~~-----------~~~ 325 (478)
.+... .. . ...+......+.+..+.|.+.-. -+.+..+++.| +.+.+||.+.+.. .-.
T Consensus 186 ~~~~~~~p~~aE~~ai~~~~~la~~~~~~~~i~Hvs~~~~l~~i~~a~~~g~~v~~ev~ph~L~~~~~~~~~~~~~~k~~ 265 (411)
T TIGR00857 186 QLGLPARPPEAEEVAVARLLELAKHAGCPVHICHISTKESLELIVKAKSQGIKITAEVTPHHLLLSEEDVARLDGNGKVN 265 (411)
T ss_pred hhCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHHHHHcCCcEEEeechhhheecHHHHhCCCccEEEc
Confidence 00000 00 0 12222223345566777766521 13344455555 5567888643210 011
Q ss_pred C---------cHHHHHHCCCcEEEcCCCCCCCCCc---CHHH--------HHHHHHHHhcccccccCCCCCCCCCCHHHH
Q 011766 326 A---------PIKEMLHADICVSLGTDGAPSNNRM---SIVD--------EMYLASLINKGREVFANGTTDPAALPAETV 385 (478)
Q Consensus 326 ~---------~~~~~~~~gv~v~~gsD~~~~~~~~---~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 385 (478)
+ .+.+.+..|+..+++||+.|+.... +++. +.....+... ..+.+++++++
T Consensus 266 Pplr~~~~~~~L~~~l~~g~i~~i~sDh~p~~~~~k~~~~~~~~~G~~g~e~~~~~~~~~---------~~~~~~~~~~~ 336 (411)
T TIGR00857 266 PPLREKEDRLALIEGLKDGIIDIIATDHAPHTLEEKTKEFAAAPPGIPGLETALPLLLQL---------LVKGLISLKDL 336 (411)
T ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEcCCCCCChHHccCCHhhCCCCceeHHHHHHHHHHH---------HHhCCCCHHHH
Confidence 2 3446788899999999998763111 0110 1111111110 01225999999
Q ss_pred HHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhh-----ccCCCCeeEEEEccEEEEEC
Q 011766 386 LRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVY-----CMRTENVVSVMCNGQWVMKN 456 (478)
Q Consensus 386 l~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~-----~~~~~~v~~v~v~G~~v~~~ 456 (478)
++++|.|||+++|+.++ |+|++|+.|||+++|.+..+..+.++..+...+ .....+|.+|+++|++||+|
T Consensus 337 ~~~~t~~pa~~~g~~~~-G~l~~G~~ADlvi~d~~~~~~~~~~~~~~~~~~sp~~g~~~~g~v~~tiv~G~~v~~~ 411 (411)
T TIGR00857 337 IRMLSINPARIFGLPDK-GTLEEGNPADITVFDLKKEWTINAETFYSKAKNTPFEGMSLKGKPIATILRGKVVYED 411 (411)
T ss_pred HHHHhHHHHHHhCCCCC-CccCCCCcCCEEEEcCCCCEEEchHHCccCCCCCCcCCCEEEeEEEEEEECCEEEecC
Confidence 99999999999999544 999999999999999885432222221111100 01123799999999999975
|
All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase. |
| >cd01305 archeal_chlorohydrolases Predicted chlorohydrolases | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=212.16 Aligned_cols=256 Identities=20% Similarity=0.286 Sum_probs=190.5
Q ss_pred EEeecccccccccchhhhccccCCCCchHHh---hhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc---CH
Q 011766 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWL---HDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ---HV 150 (478)
Q Consensus 77 ~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~---~~ 150 (478)
+|+|||||+|+|..++.+|+...+.++.+|+ .+..|+.+..+++++.+......+.+++++||||+.|+... ..
T Consensus 1 ~v~PG~vn~H~H~~~~~~rg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~ 80 (263)
T cd01305 1 ILIPALVNAHTHLGDSAIKEVGDGLPLDDLVAPPDGLKHRLLAQADDRELAEAMRKVLRDMRETGIGAFADFREGGVEGI 80 (263)
T ss_pred CccccceeccccHHHHHhhcCCCCCcHHHHhcCcccchHHHHHhCCHHHHHHHHHHHHHHHHhcCCeEEEEccCcchhHH
Confidence 4899999999999999999988888888866 33445667889999999999999999999999999997532 24
Q ss_pred HHHHHHHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccc
Q 011766 151 SEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIM 230 (478)
Q Consensus 151 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (478)
....+..+..|++. ...++. +.. . . ..++ +.+ +...++++...
T Consensus 81 ~a~~~a~~~~g~r~---~~~~~~----~~~------~---~------------~~~~-~~~--------~~~~~~~~~~~ 123 (263)
T cd01305 81 ELLRRALGKLPVPF---EVILGR----PTE------P---D------------DPEI-LLE--------VADGLGLSSAN 123 (263)
T ss_pred HHHHHHHHhcCCCc---eEEecc----CCc------c---h------------HHHH-HHh--------hcccccCCCCC
Confidence 56677778888874 111110 100 0 0 1111 111 11125556665
Q ss_pred cCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCC
Q 011766 231 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGV 310 (478)
Q Consensus 231 ~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~ 310 (478)
+++ +++++++|+++|+++++|+.+...+. +...++.+... +++ .+.|+.++++++++++++.|+
T Consensus 124 ~~~---l~~~~~~A~~~g~~v~~H~~e~~~~~---------g~~~i~~~~~~---~~~-~i~H~~~l~~~~~~~la~~g~ 187 (263)
T cd01305 124 DVD---LEDILELLRRRGKLFAIHASETRESV---------GMTDIERALDL---EPD-LLVHGTHLTDEDLELVRENGV 187 (263)
T ss_pred ccC---HHHHHHHHHHCCCeeEEecCCCCCCC---------CchhHHHHHhC---CCC-EEEEcCCCCHHHHHHHHHcCC
Confidence 555 99999999999999999999865421 01123333332 333 479999999999999999999
Q ss_pred eEEECccchhhc-cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHH
Q 011766 311 KVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMA 389 (478)
Q Consensus 311 ~~~~~p~~~~~~-~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~ 389 (478)
.+++||.++... .+..|+++++++|+++++|||+... ++.+++++|+.+....... ..++++++|+++
T Consensus 188 ~v~~~P~sn~~l~~g~~p~~~l~~~Gv~v~lGtD~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~a 256 (263)
T cd01305 188 PVVLCPRSNLYFGVGIPPVAELLKLGIKVLLGTDNVMV-NEPDMWAEMEFLAKYSRLQ----------GYLSPLEILRMA 256 (263)
T ss_pred cEEEChhhHHHhCCCCCCHHHHHHCCCcEEEECCCCcc-CCCCHHHHHHHHHHHhccc----------ccCCHHHHHHHH
Confidence 999999998876 6789999999999999999998654 4678999999877554311 147999999999
Q ss_pred hHHHHHH
Q 011766 390 TINGAKS 396 (478)
Q Consensus 390 T~~pA~~ 396 (478)
|.|+|++
T Consensus 257 T~~gA~~ 263 (263)
T cd01305 257 TVNAAEF 263 (263)
T ss_pred hhccccC
Confidence 9999974
|
These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases. |
| >PRK04250 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-26 Score=217.23 Aligned_cols=349 Identities=15% Similarity=0.166 Sum_probs=184.3
Q ss_pred ecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCCCCch
Q 011766 25 NAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLM 104 (478)
Q Consensus 25 n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~~~~~ 104 (478)
+++|++.. .+ .+++|+|+||+|++|++... .+.++||++|++|+|||||+|+|+...
T Consensus 3 ~~~v~~~~---~~-~~~~i~i~~G~I~~i~~~~~-------~~~~~iD~~g~~v~PG~ID~HvH~~~~------------ 59 (398)
T PRK04250 3 EGKFLLKG---RI-VEGGIGIENGRISKISLRDL-------KGKEVIKVKGGIILPGLIDVHVHLRDF------------ 59 (398)
T ss_pred eEEEEECC---cE-EEEEEEEECCEEEEeeCCCC-------CCCeEEECCCCEEccCEEeccccccCC------------
Confidence 57788642 33 36799999999999974110 245899999999999999999998210
Q ss_pred HHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC-----HHHHHHHHHHhCCeEEEecccccCCCCCCC
Q 011766 105 TWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-----VSEMAKAVELLGLRACLVQSTMDCGEGLPA 179 (478)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 179 (478)
.. ..........+.++++|||++++++... ...+........-..++...... .
T Consensus 60 ------------~~---~~~e~~~~~~~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~----- 118 (398)
T PRK04250 60 ------------EE---SYKETIESGTKAALHGGITLVFDMPNTKPPIMDEKTYEKRMRIAEKKSYADYALNF-L----- 118 (398)
T ss_pred ------------CC---CcHHHHHHHHHHHHhCCeEEEEECCCCCCCCCcHHHHHHHHHHhCcCceeeEEEEE-e-----
Confidence 00 0112234456678999999999986432 22222222222222222211111 0
Q ss_pred cccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCCh
Q 011766 180 SWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP 259 (478)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~ 259 (478)
... ...+ +..+.. ..++.+.... ......+.+.. . ..+.+..+.+|+.+..
T Consensus 119 ------~~~---------------~~~~-l~~l~~---~~~k~f~~~~-~~~~~~~~~~~--~-~~~~~~~v~~H~E~~~ 169 (398)
T PRK04250 119 ------IAG---------------NCEK-AEEIKA---DFYKIFMGAS-TGGIFSENFEV--D-YACAPGIVSVHAEDPE 169 (398)
T ss_pred ------cCC---------------CHHH-HHHHHh---hheEEEEecC-CCchhHHHHHH--H-HHhcCCeEEEEecChh
Confidence 000 1111 111111 1123222110 01111111211 1 2223445777775433
Q ss_pred hhhHHHhhhcCCCC-----chHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcC---CeEEECccchhhc---------
Q 011766 260 YENQVVMDTRKVDH-----GTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAG---VKVSHCPASAMRM--------- 322 (478)
Q Consensus 260 ~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~---~~~~~~p~~~~~~--------- 322 (478)
.... ..+... .....+.-....+.+..+.|.+ +.+.++.+++.| +.+.+||.+....
T Consensus 170 ~~~~----~~~~p~~aE~~av~r~~~la~~~~~~lhi~HvS--t~~~~~~i~~~g~~~vt~Ev~ph~L~l~~~~~~~~~~ 243 (398)
T PRK04250 170 LIRE----FPERPPEAEVVAIERALEAGKKLKKPLHICHIS--TKDGLKLILKSNLPWVSFEVTPHHLFLTRKDYERNPL 243 (398)
T ss_pred hhhc----ccCCCHHHHHHHHHHHHHHHHHhCCCEEEEeCC--CHHHHHHHHHcCCCcEEEEeCHHHhccCHHHHCCCCc
Confidence 2110 000000 0011222223334455555555 345566665554 4567777753211
Q ss_pred -cCCCcHH---------HHHHCCCcEEEcCCCCCCC--------CCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHH
Q 011766 323 -LGFAPIK---------EMLHADICVSLGTDGAPSN--------NRMSIVDEMYLASLINKGREVFANGTTDPAALPAET 384 (478)
Q Consensus 323 -~~~~~~~---------~~~~~gv~v~~gsD~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~ 384 (478)
.-.+|+| +.+. ...+++|||.|+. +...-.+.+ ...+... ..+..+|+++
T Consensus 244 ~k~~PPLR~~~d~~aL~~~l~--~Id~i~sDHaP~~~~~k~~~~~G~~g~e~~-lpl~~~~---------v~~~~lsl~~ 311 (398)
T PRK04250 244 LKVYPPLRSEEDRKALWENFS--KIPIIASDHAPHTLEDKEAGAAGIPGLETE-VPLLLDA---------ANKGMISLFD 311 (398)
T ss_pred eEEcCCCCCHHHHHHHHHhhc--cCCEEEcCCcccCHHHhhcCCCCcchHHHH-HHHHHHH---------HHhcCCCHHH
Confidence 1112332 2222 3788999998762 111112221 1111110 0123599999
Q ss_pred HHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhc---c--CCCCeeEEEEccEEEEECCee
Q 011766 385 VLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYC---M--RTENVVSVMCNGQWVMKNKKI 459 (478)
Q Consensus 385 al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~---~--~~~~v~~v~v~G~~v~~~g~~ 459 (478)
+++++|.|||+++|+. ++| |++|++|||+|+|.+..+..+..+..+...+. . ...+|.+||++|++||++|++
T Consensus 312 ~v~~~t~npAk~lgl~-~~G-L~~G~~ADlvi~D~~~~~~v~~~~~~s~~~~sp~~g~~l~g~v~~tiv~G~~v~~~g~~ 389 (398)
T PRK04250 312 IVEKMHDNPARIFGIK-NYG-IEEGNYANFAVFDMKKEWTIKAEELYTKAGWTPYEGFKLKGKVIMTILRGEVVMEDDEI 389 (398)
T ss_pred HHHHHHHHHHHHhCCC-CcC-ccCCCcCCEEEEcCCCcEEEChhhccccCCCCCCCCCEEeeEEEEEEECCEEEEECCEE
Confidence 9999999999999994 469 99999999999999854433333222211110 1 134789999999999999998
Q ss_pred ecccHHH
Q 011766 460 LLLMRGR 466 (478)
Q Consensus 460 ~~~~~~~ 466 (478)
++...|+
T Consensus 390 ~~~~~G~ 396 (398)
T PRK04250 390 IGKPRGV 396 (398)
T ss_pred cCCCCCe
Confidence 8665554
|
|
| >cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=215.49 Aligned_cols=84 Identities=20% Similarity=0.195 Sum_probs=64.8
Q ss_pred CCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEEC
Q 011766 377 PAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKN 456 (478)
Q Consensus 377 ~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~ 456 (478)
+..+|++++++++|.+||++||++ ++|.|++|++|||+|+|.++....+. +..+ . . ....+|.+||++|++|+++
T Consensus 424 ~reLSLeei~~mtT~nPAKiLGL~-~kG~L~~G~~ADLvIfD~n~~~v~~~-dl~s-~-~-~~~gkV~~Tiv~GkvVv~d 498 (541)
T cd01304 424 DREYSLYEIAIMTRAGPAKLLGLS-DKGHLGVGADADIAIYDDDPDQVDPS-DYEK-V-E-KAFSRAAYVLKDGEIVVKD 498 (541)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCC-CCCccCCCCcCCEEEEeCCcCccCch-hhcC-c-e-eecCcEEEEEECCEEEEEC
Confidence 345899999999999999999995 46999999999999999885533332 2221 1 1 1235799999999999999
Q ss_pred CeeecccHH
Q 011766 457 KKILLLMRG 465 (478)
Q Consensus 457 g~~~~~~~~ 465 (478)
|+++....|
T Consensus 499 Geiv~~~~G 507 (541)
T cd01304 499 GEVVAEPWG 507 (541)
T ss_pred CEEccCCCC
Confidence 988754333
|
FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen. |
| >cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-25 Score=208.01 Aligned_cols=296 Identities=19% Similarity=0.182 Sum_probs=174.6
Q ss_pred eEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCCCCchHHhhhccccccCCCChH
Q 011766 42 GVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEE 121 (478)
Q Consensus 42 ~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (478)
+|+|+||+|++|++.... ..+.++||++|++|+|||||+|+|+...... ...
T Consensus 1 ~i~i~~g~I~~i~~~~~~-----~~~~~~id~~g~~v~PG~iD~H~H~~~~g~~--------------------~~~--- 52 (338)
T cd01307 1 DVAIENGKIAAVGAALAA-----PAATQIVDAGGCYVSPGWIDLHVHVYQGGTR--------------------YGD--- 52 (338)
T ss_pred CEEEECCEEEEccCCCCC-----CCCCeEEECCCCEEecCeEEeeecCCCCCcc--------------------cCC---
Confidence 589999999999985321 1246899999999999999999999532100 000
Q ss_pred HHHHHHHHHHHHHHhcCcceeecCCcc---CHHHHHHHH-HHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCcc
Q 011766 122 DSYISTLLCGIELIHSGVTCFAEAGGQ---HVSEMAKAV-ELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSIS 197 (478)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~~~~~~---~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (478)
...+.++.+|+||+++++.. ......+.. ...+.+......+...+...+..+. . ..
T Consensus 53 -------~~~~~a~~~GvTtvvd~~~~~~~~~~~~~~~~~~~~~~~v~a~~~~~~~g~~~~~~~~-----~-~~------ 113 (338)
T cd01307 53 -------RPDMIGVKSGVTTVVDAGSAGADNIDGFRYTVIERSATRVYAFLNISRVGLVAQDELP-----D-PD------ 113 (338)
T ss_pred -------CHhHHHHcCceeEEEeCCCCCCCCHHHHHHHHHHhhhceEEEEEeeeccccccccccC-----C-hh------
Confidence 02234789999999987632 223323333 3344422221101001111111100 0 00
Q ss_pred ccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHH
Q 011766 198 FNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVT 277 (478)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~ 277 (478)
........+.+.+. ..+-..++..+..+.......+.+.+.++++++.|+++.+|+.+.......+
T Consensus 114 -~~~~~~l~~~~~e~-~~gi~gik~~~~~~~~~~~~~~~l~~~~~~a~~~~~pi~vH~~~~~~~~~~~------------ 179 (338)
T cd01307 114 -NIDEDAVVAAAREY-PDVIVGLKARASKSVVGEWGIKPLELAKKIAKEADLPLMVHIGSPPPILDEV------------ 179 (338)
T ss_pred -HCCHHHHHHHHHHC-cCcEEEEEEEeecccccccCCcHHHHHHHHHHHcCCCEEEEeCCCCCCHHHH------------
Confidence 00111333334222 2222335544443333333334488889999999999999997655432221
Q ss_pred HHhhhCCCCCCeeeeeeccCCh-----------hHHHHHHhcCCeEEECccchhhccCCCcHHHHHHCCC-cEEEcCCCC
Q 011766 278 FLDKIEFLQNNLLSAHTVWVNH-----------TEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHADI-CVSLGTDGA 345 (478)
Q Consensus 278 ~l~~~~~~~~~~~i~h~~~~~~-----------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~gv-~v~~gsD~~ 345 (478)
+.. +.....+.|+..-+. +.+..+.+.|+.+++...... ....+..++++.|+ +..++||.+
T Consensus 180 -~~~---l~~g~~~~H~~~g~~~~~~~~~~~~~~~~~~~~~~G~~~d~~~G~~~--~~~~~~~~l~~~G~~~~~lstD~~ 253 (338)
T cd01307 180 -VPL---LRRGDVLTHCFNGKPNGIVDEEGEVLPLVRRARERGVIFDVGHGTAS--FSFRVARAAIAAGLLPDTISSDIH 253 (338)
T ss_pred -HHH---hcCCCEEEeccCCCCCCCCCCCCcHHHHHHHHHhCCEEEEeCCCCCc--hhHHHHHHHHHCCCCCeeecCCcc
Confidence 111 122245677777543 677888899988876632100 11244667888996 578999975
Q ss_pred CCC----CCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCC
Q 011766 346 PSN----NRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF 420 (478)
Q Consensus 346 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~ 420 (478)
..+ ....+...++... ..+++.+++++++|.|||+++++ +++|+|++|+.|||++++.+
T Consensus 254 ~~~~~~~p~~~l~~~l~~l~---------------~~gi~~ee~~~~~T~NpA~~lgl-~~~G~l~~G~~ad~~v~~~~ 316 (338)
T cd01307 254 GRNRTNGPVYALATTLSKLL---------------ALGMPLEEVIEAVTANPARMLGL-AEIGTLAVGYDADLTVFDLK 316 (338)
T ss_pred ccCCCCCccccHHHHHHHHH---------------HcCCCHHHHHHHHHHHHHHHcCC-CCCCccCCCCcCCEEEEeCC
Confidence 421 1111222222211 12699999999999999999999 56899999999999999986
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=188.70 Aligned_cols=162 Identities=17% Similarity=0.148 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccC-ChhHHHHHHhcCCeEEE
Q 011766 236 LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAGVKVSH 314 (478)
Q Consensus 236 ~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~-~~~~~~~~~~~~~~~~~ 314 (478)
..+.+.++|++.|+.+..|-.....-.+... ..+ +.-..+. +.+..+...+.|..+.+
T Consensus 211 ~r~~i~~~c~~rgI~lASHDDaT~~hV~es~--------------~~G-------v~iAEFPtT~eAA~asr~~Gm~VlM 269 (377)
T COG3454 211 NRQAIAALCRERGIALASHDDATVEHVAESH--------------GLG-------VAIAEFPTTVEAAKASRELGMQVLM 269 (377)
T ss_pred hHHHHHHHHHHcCCceecCCcCcHHHHHHHH--------------hcC-------eeEEeCccHHHHHHHHHHhCchhhc
Confidence 4566678888888888888765433222111 111 1122222 34455556667877777
Q ss_pred Cccchhhc---cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCH-HHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHh
Q 011766 315 CPASAMRM---LGFAPIKEMLHADICVSLGTDGAPSNNRMSI-VDEMYLASLINKGREVFANGTTDPAALPAETVLRMAT 390 (478)
Q Consensus 315 ~p~~~~~~---~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T 390 (478)
..+.-.+. .|.-..+++.+.|+..+++||..|. ++ ...+..+.... .+|+.||+++.|
T Consensus 270 GAPNivrGgSHsGNvsA~ela~~glLDiLsSDY~P~----SLl~A~F~La~~~~--------------~~~lpqAvalvt 331 (377)
T COG3454 270 GAPNIVRGGSHSGNVSARELAQHGLLDILSSDYVPA----SLLHAAFRLADLGS--------------NISLPQAVALVT 331 (377)
T ss_pred CCCceeccCCcccchhHHHHHhCCceeeecccCCcH----HHHHHHHHHhhhhc--------------ccCHHHHHHHhc
Confidence 66655544 3444668899999999999998664 23 23333333221 368999999999
Q ss_pred HHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEE
Q 011766 391 INGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVM 454 (478)
Q Consensus 391 ~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~ 454 (478)
.|||+++|+.+ +|+|++|++||||.+..+. ....|+.||+.|+-|+
T Consensus 332 ~nPA~algl~D-RG~Ia~GlrADlv~v~~~~-----------------~vp~ir~vwr~G~rv~ 377 (377)
T COG3454 332 KNPARALGLTD-RGRIAPGLRADLVRVRRDG-----------------GVPVIRTVWRAGKRVA 377 (377)
T ss_pred cCHHHhcCCCc-ccccccccccceEEEecCC-----------------CCceeeeeeecceecC
Confidence 99999999974 6999999999999776641 1258999999999763
|
|
| >TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915 | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=202.20 Aligned_cols=340 Identities=15% Similarity=0.157 Sum_probs=179.0
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCC-CEEeecccccccccchhhhccc
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQS-QILLPGFVNTHVHTSQQLAKGI 97 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G-~~v~PGfID~H~H~~~~~~~~~ 97 (478)
++++|+|++|+++ . ..+|+|+||||++|++.... .+.++||++| ++|+|||||+|+|+....
T Consensus 1 ~~~~i~n~~i~~~--~-----~~~v~i~~g~I~~v~~~~~~------~~~~~iD~~g~~~l~PG~ID~H~H~~~~~---- 63 (365)
T TIGR03583 1 YDLLIKNGRTVNG--T-----PVDIAIEDGKIAAVGTTITG------SAKQTIDLEGETYVSAGWIDDHTHCFPKS---- 63 (365)
T ss_pred CcEEEECcEEecC--C-----eeEEEEECCEEEEecCCCCC------CCCeEEECCCCeEEecCEEEeeeccCCCc----
Confidence 4789999999953 1 23999999999999864321 2458999999 999999999999984210
Q ss_pred cCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCc---cCHHHHHHHHHHhCCeEEEecccccCC
Q 011766 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---QHVSEMAKAVELLGLRACLVQSTMDCG 174 (478)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~ 174 (478)
.... .+ .. ..++.+|||++.+++. .....+.+..+..+.+.+.... . ..
T Consensus 64 ------------------~~~~-~~-~~------~~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~ 115 (365)
T TIGR03583 64 ------------------ALYY-DE-PD------EIGVKTGVTTVVDAGSTGADDIDDFYRLAQQAKTNVFALLN-I-SR 115 (365)
T ss_pred ------------------cccc-CC-Hh------HhhhcCceeEEEeCCCCCCCCHHHHHHHHHhhCCcEEEEee-e-hh
Confidence 0000 00 00 1247889999998652 2333444444443322211100 0 00
Q ss_pred CCC-CCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEecccc--ccCCHHHHHHHHHHHHHcCCce
Q 011766 175 EGL-PASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQI--MNATDRLLLETRDMAREFKTGI 251 (478)
Q Consensus 175 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~a~~~~~~v 251 (478)
.+. ++.. ...... .......+.++.+... .-.++..+.+... ...++..+.+.+..+ +.++++
T Consensus 116 ~G~~~~~~----~~~~~~--------~~~~~l~~~~~~~~~~-vv~~~~~~t~~~i~E~gl~~~~~~~~l~~~-~~~~pv 181 (365)
T TIGR03583 116 IGLVAQDE----LADLSN--------LDASAVKQAVERYPDF-IVGLKARMSKSVVGDNGIEPLEIAKQIQQE-NLELPL 181 (365)
T ss_pred ccccChhh----hhChHH--------hHHHHHHHHHHhCcCc-EEEEEEeecccccccCCcCHHHHHHHHHHh-cCCCcE
Confidence 111 1100 000000 0001222233222110 0011222222211 122243444433333 578999
Q ss_pred eEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCCh-----------hHHHHHHhcCCeEEECc-cch
Q 011766 252 HMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH-----------TEIGLLSRAGVKVSHCP-ASA 319 (478)
Q Consensus 252 ~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~-----------~~~~~~~~~~~~~~~~p-~~~ 319 (478)
.+|+.+.......+.. ... ....+.|+..-.+ +.+....+.|..+.... ...
T Consensus 182 ~vH~~~a~~~~~~i~~-------------~~~---~g~~~~H~fng~~~~~~r~~g~~~~~~~~~l~~G~i~d~~hg~~~ 245 (365)
T TIGR03583 182 MVHIGSAPPELDEILA-------------LME---KGDVLTHCFNGKPNGILRETGEVKPSVLEAYNRGVILDVGHGTAS 245 (365)
T ss_pred EEEeCCCccCHHHHHH-------------Hhc---CCCeeeeeecCCCCCCCCCcchHHHHHHHHHhCeEEEEeCCCCCC
Confidence 9999876544333222 111 1113577665443 66666777788777652 211
Q ss_pred hhccCCCcHHHHHHCC-CcEEEcCCCCCCC----CCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHH
Q 011766 320 MRMLGFAPIKEMLHAD-ICVSLGTDGAPSN----NRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGA 394 (478)
Q Consensus 320 ~~~~~~~~~~~~~~~g-v~v~~gsD~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA 394 (478)
.. ......+...+ +.++.++|....+ +...+...++... . .|++++++++++|.|||
T Consensus 246 ~~---~~~~~~~~~~~~~~~td~~d~~~~~~~~gp~~~l~~~~~~~~-~--------------~g~~~~ea~~~~t~npa 307 (365)
T TIGR03583 246 FS---FHVAEKAKRAGIFPDTISTDIYIRNRINGPVYSLATVMSKFL-A--------------LGYSLEEVIEKVTKNAA 307 (365)
T ss_pred ch---HHHHHHHHhCCCCCcccccccccCCCccCccccHHHHHHHHH-H--------------cCCCHHHHHHHHHHHHH
Confidence 11 11122333344 3455666653221 1112333333222 1 26999999999999999
Q ss_pred HHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEE
Q 011766 395 KSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWV 453 (478)
Q Consensus 395 ~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v 453 (478)
+++|+++ .|+|++|+.|||++||.+.-. ....|-..+....-+...+..|+++|++.
T Consensus 308 ~~~gl~~-~g~i~~g~~ad~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 364 (365)
T TIGR03583 308 EILKLTQ-KGRLQEGYDADLTIFTVKAEP-KKLTDSEGDSRIAEEQIKPLAVIIGGEYY 364 (365)
T ss_pred HHhCCCC-CCCcCCCCcccEEEEecCCCC-ceeecCCCCEEEeccccceEEEEECCEEe
Confidence 9999964 799999999999999974211 12222222222222335678899999853
|
Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown. |
| >PRK00369 pyrC dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.4e-24 Score=201.76 Aligned_cols=327 Identities=14% Similarity=0.143 Sum_probs=182.5
Q ss_pred cceEEEECCEEEEEcCChhhhhhhccCCCeEEeC-CCCEEeecccccccccchhhhccccCCCCchHHhhhccccccCCC
Q 011766 40 NGGVFVVQDRIKAIGQSADILQQFSQMADQIIDL-QSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNM 118 (478)
Q Consensus 40 ~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~-~G~~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (478)
+..|.|++|+|..|++... .++++||+ +|++|+|||||+|+|+... .+
T Consensus 13 ~~~~~~~~~~~~~i~~~~~-------~~~~~id~~~G~~vlPG~ID~HvH~r~p------------------------g~ 61 (392)
T PRK00369 13 KEIKEICINFDRRIKEIKS-------RCKPDLDLPQGTLILPGAIDLHVHLRGL------------------------KL 61 (392)
T ss_pred CceEEEeeeeeeeEeeccC-------CCCceeecCCCCEEeCCEEEcccccCCC------------------------CC
Confidence 3477888999998887521 36789999 6999999999999999321 11
Q ss_pred ChHHHHHHHHHHHHHHHhcCcceeecCCccC-----HHHHHHHHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCC
Q 011766 119 TEEDSYISTLLCGIELIHSGVTCFAEAGGQH-----VSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPD 193 (478)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (478)
... .......++++++||||+++++... ...+....+...-..++...... + ...
T Consensus 62 ~~~---ed~~sgs~AAa~GGvTtv~~mPnt~P~~~~~~~l~~~~~~a~~~~~vd~~~~~-~--~~~-------------- 121 (392)
T PRK00369 62 SYK---EDVASGTSEAAYGGVTLVADMPNTIPPLNTPEAITEKLAELEYYSRVDYFVYS-G--VTK-------------- 121 (392)
T ss_pred ccc---ccHHHHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCcCCeEEEEEEe-e--ccC--------------
Confidence 111 1223345678999999999986432 12222222222222222211111 0 000
Q ss_pred CCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCC
Q 011766 194 SSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDH 273 (478)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~ 273 (478)
+..+ +... +...++.+. . .. ....+++.+.+++..+.+|+.+..-.... .+...
T Consensus 122 ----------~~~e-l~~~---~~~g~k~f~---~--~~---~~~~~~~~~~~~~~~v~~HaE~~~l~~~~----~~~~r 175 (392)
T PRK00369 122 ----------DPEK-VDKL---PIAGYKIFP---E--DL---EREETFRVLLKSRKLKILHPEVPLALKSN----RKLRR 175 (392)
T ss_pred ----------CHHH-HHHh---hCceEEEEC---C--CC---chHHHHHHHHHhCCEEEEeCCCHHHhhcc----hhccc
Confidence 1111 2221 122233221 1 11 11223444455568899999764321110 00000
Q ss_pred ch-HH--HHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-------cCCCcHH---------HHHHC
Q 011766 274 GT-VT--FLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-------LGFAPIK---------EMLHA 334 (478)
Q Consensus 274 ~~-~~--~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-------~~~~~~~---------~~~~~ 334 (478)
.. .+ .+.....+ .+..+.|.+. .+.++.+++.|+.+.+||.+.... .-.+|+| +.+..
T Consensus 176 p~~aE~~ai~~~~~~-~~lhi~HvSt--~~~v~~ak~~gvt~Ev~pHhL~l~~~~~~~~k~~PPLR~~~dr~aL~~~l~~ 252 (392)
T PRK00369 176 NCWYEIAALYYVKDY-QNVHITHASN--PRTVRLAKELGFTVDITPHHLLVNGEKDCLTKVNPPIRDINERLWLLQALSE 252 (392)
T ss_pred CHHHHHHHHHHHHHh-CCEEEEECCC--HHHHHHHHHCCCeEEechhHheeccCCCCceEEeCCCCCHHHHHHHHHHHHh
Confidence 01 11 11222222 4566666663 456788888899999999865421 1122333 33333
Q ss_pred CCcEEEcCCCCCCCCCc---CHHH--------HHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCc
Q 011766 335 DICVSLGTDGAPSNNRM---SIVD--------EMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDI 403 (478)
Q Consensus 335 gv~v~~gsD~~~~~~~~---~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~ 403 (478)
..+++|||.|+.... +++. +.....+.. .....+++++++++++|.|||+++|+. .
T Consensus 253 --id~i~SDHaP~~~~~K~~~f~~~~~Gi~GlE~~lpll~~---------~v~~~~lsl~~~v~~~s~nPA~ilgl~--~ 319 (392)
T PRK00369 253 --VDAIASDHAPHSSFEKLQPYEVCPPGIAALSFTPPFIYT---------LVSKGILSIDRAVELISTNPARILGIP--Y 319 (392)
T ss_pred --CCEEEeCCCCCCHHHccCCHhhCCCCCeeHHHHHHHHHH---------HHHcCCCCHHHHHHHHHHHHHHHhCCC--C
Confidence 779999998863211 1110 011111111 012346999999999999999999994 3
Q ss_pred cccccCccccEEEEcCCCCCCCCc-----CChhhhhhhccCCCCeeEEEEccEEEEECCeeecc
Q 011766 404 GSLEAGKKADMVVVDPFSWPMVPV-----HDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLL 462 (478)
Q Consensus 404 G~l~~G~~ADlvv~d~~~~~~~~~-----~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~ 462 (478)
|.|++|++|||++||.+.+..... ..|+... .-..+|.+||++|++||+++++++.
T Consensus 320 g~i~~G~~ADlvi~d~~~~~~~~~~sk~~~sp~~G~---~l~G~v~~ti~~G~~v~~~~~~~~~ 380 (392)
T PRK00369 320 GEIKEGYRANFTVIQFEDWRYSTKYSKVIETPLDGF---ELKASVYATIVQGKLAYLEGEVFPV 380 (392)
T ss_pred CccCCCCccCEEEEeCCceeEccccccCCCCCCCCC---EeeeEEEEEEECCEEEEECCeEecC
Confidence 889999999999999985432111 1122211 1235899999999999999998743
|
|
| >COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-24 Score=192.16 Aligned_cols=93 Identities=23% Similarity=0.267 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCC-CcCC---hhhhhhhccCCCCeeEEEEccEEEE
Q 011766 379 ALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMV-PVHD---RITSLVYCMRTENVVSVMCNGQWVM 454 (478)
Q Consensus 379 ~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~-~~~d---~~~~~~~~~~~~~v~~v~v~G~~v~ 454 (478)
-+|++.|++.+|..+|+.+||.+ .|.|++|+.|||+|+|++..... +..+ |.....+...+.++..|.|+|.+.+
T Consensus 473 ~l~Le~av~rmT~~~Ae~~GL~d-rGlvreG~rADl~viDp~~vr~~a~y~~~~lPa~G~~~~~vn~~~vat~v~Gvvs~ 551 (579)
T COG3653 473 LLSLERAVRRMTGELAEWFGLGD-RGLVREGDRADLVVIDPHLVRDVATYTEPALPAYGILRVMVNRNVVATGVGGVVSF 551 (579)
T ss_pred cccHHHHHHHHhccHHHHhCccc-ccccccccccceEEEccccccccccccCccCCCCcceEEEEeccceeeecceeEEE
Confidence 49999999999999999999965 69999999999999999744322 1111 1111111112233444444499999
Q ss_pred ECCeeec-ccHHHHHHHHH
Q 011766 455 KNKKILL-LMRGRLFQLQD 472 (478)
Q Consensus 455 ~~g~~~~-~~~~~~~~~~~ 472 (478)
++|++++ ++.|+++|..-
T Consensus 552 rdGe~tg~~~aGR~lR~g~ 570 (579)
T COG3653 552 RDGEFTGQVKAGRYLRAGE 570 (579)
T ss_pred ecCcccCcccccchhcccc
Confidence 9999999 69999998643
|
|
| >COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=187.07 Aligned_cols=85 Identities=21% Similarity=0.241 Sum_probs=71.7
Q ss_pred CCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECC
Q 011766 378 AALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNK 457 (478)
Q Consensus 378 ~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g 457 (478)
..+++.|...+.-++|||.+|+.+++|.|.+|.+||+.|+|-+|.+..|..| +..+...+ ..-.+|+++|++|+++|
T Consensus 436 rE~t~~eia~~TRa~~ak~lgl~e~kGhLg~GadadIaiYdlnP~~vDps~d-ye~v~kaf--~~A~ytlK~GeIvvkdG 512 (575)
T COG1229 436 RELTLYELAIMTRANPAKVLGLSERKGHLGVGADADIAIYDLNPEQVDPSND-YEKVEKAF--RKAAYTLKGGEIVVKDG 512 (575)
T ss_pred ccccHHHHHHHHhcChhhhcccccccCccCcCccCceEEEecChhhcCCccc-HHHHHHHH--hheeEEecCceEEEecc
Confidence 4589999999999999999999999999999999999999999888877665 33222211 57899999999999999
Q ss_pred eeecccHH
Q 011766 458 KILLLMRG 465 (478)
Q Consensus 458 ~~~~~~~~ 465 (478)
+++....|
T Consensus 513 eiv~~p~g 520 (575)
T COG1229 513 EIVAEPEG 520 (575)
T ss_pred eEEecccC
Confidence 99876655
|
|
| >PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily [] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.1e-25 Score=209.68 Aligned_cols=290 Identities=26% Similarity=0.345 Sum_probs=177.1
Q ss_pred EEeecccccccccchhhhccccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCHHH----
Q 011766 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSE---- 152 (478)
Q Consensus 77 ~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~---- 152 (478)
+|+|||||+|+|+.++...+. +..+..+........+++++||||+++++......
T Consensus 1 ~v~PGlID~H~H~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~ 60 (333)
T PF01979_consen 1 YVMPGLIDAHVHGGQGGLRGL--------------------LDPEDHYESIRTGAKAALKGGVTTVLDTPHTSPNPDIEL 60 (333)
T ss_dssp EEEE-EEEEEEEGGGTTHTTS--------------------SSHHHHHHHHHHHHHHHHHTTEEEEEEEEESSHCHHHHH
T ss_pred CEEcChhHHhhCcCCcCcccc--------------------CCHHHHHHHHHHHHHHHHhcCeEEEEcCcccCCcccccc
Confidence 699999999999976544431 44556677777888999999999999984222111
Q ss_pred ---HHHHHHH-hCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCC--CCCeEEEEec
Q 011766 153 ---MAKAVEL-LGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAA--DGRIRIWFGI 226 (478)
Q Consensus 153 ---~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 226 (478)
..+.... ..+..... .+.....+....+.......... ....+...+..+.+....... ...+......
T Consensus 61 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (333)
T PF01979_consen 61 RNEIMEGLAAAPKIEPAMT-LLGTGSVGGHGEGPNEPPDKNGP----HDEAFEGEDFIKFIEEAGSEIKRIDGVIPAISP 135 (333)
T ss_dssp HHHHHHHHHHHHHHEEEEE-EEEECECSEEEECHHHHHHHHSE----HHHHHHHHHHHHHHHHHTTTCEEEECEEEEEEH
T ss_pred ccccccccccchhhhcccc-ccccccccccccccccccccccC----CchhhhHHHHHHHhhhhhhhhcccccccccccc
Confidence 1111111 11111100 00000000000000000000000 000000001223333332221 1134444666
Q ss_pred cccccCCHHHHHHHHHHHHH-----c-CCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCC-----CCCeeeeeec
Q 011766 227 RQIMNATDRLLLETRDMARE-----F-KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFL-----QNNLLSAHTV 295 (478)
Q Consensus 227 ~~~~~~~~~~l~~~~~~a~~-----~-~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~i~h~~ 295 (478)
+....++.+.+...++.+++ . +.++++|+.+............ ....++.+...+.+ ....++.|+.
T Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 213 (333)
T PF01979_consen 136 HNPYTVSDEELREAVELAKEFLAAEKLGIPVHIHVAEGTGEVEAMTHLY--GMSPIEALDHLGLLEEAIDDGVDLIAHGT 213 (333)
T ss_dssp HTTTTSCHHHHHHHHHHHHHHHHHHHHTHEEEEEESSSHHHHCCCHHHH--SHHHHHHHHHHHSCHHHHHHHCEEEEEHT
T ss_pred cccccchhhhhhhHHhhhhhHHHHHhhcccceeeeccCcccceeEeeee--eccchhhhccchhhhhhcccccceeeccc
Confidence 77788899989999999988 3 9999999998776633322222 22244445544555 4567899999
Q ss_pred cCChhHHHHHHhcCCeEEECccchhh--------------------c-cCCCcHHHHHHC-CCcEEEcCCCCCCCCCcCH
Q 011766 296 WVNHTEIGLLSRAGVKVSHCPASAMR--------------------M-LGFAPIKEMLHA-DICVSLGTDGAPSNNRMSI 353 (478)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~p~~~~~--------------------~-~~~~~~~~~~~~-gv~v~~gsD~~~~~~~~~~ 353 (478)
++++++++++++.+..+..||..+.. . ....+...+++. |+. +|||+..
T Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~--lgtDg~~------- 284 (333)
T PF01979_consen 214 HLSDEEIELLKETGIGIIHCPISNDSAPHKPGKAIMMDGTAEGIYGLGSGGAPLFRMLDKMGVN--LGTDGVA------- 284 (333)
T ss_dssp TSEHHHHHHHHHHTHEEEEEHHHHHHHHHHTTHHSETTBSBTSBSCTTHHHHHHHHHHHCTTHE--ETTCTTC-------
T ss_pred cCCHHHhhhhhccCCccccccchhhhhccccccccccchhccccccccccccchhhhhhhcccc--ccccccc-------
Confidence 99999999999999999999988765 1 122345566666 888 9999321
Q ss_pred HHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEc
Q 011766 354 VDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVD 418 (478)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d 418 (478)
++|+..... +++++++++++|.|||+++|+++++|+|++||+|||||||
T Consensus 285 -~~l~~~~~~---------------~~~~~~~l~~aT~n~Ak~lg~~~~~G~i~~G~~ADlvv~D 333 (333)
T PF01979_consen 285 -EELKLFVRL---------------GISPEEALKMATINPAKILGLDDDKGSIEPGKDADLVVLD 333 (333)
T ss_dssp -HHHHHHHHH---------------HSHHHHHHHHHTHHHHHHTTSTTTSSSSSTTSB--EEEEE
T ss_pred -ccccccccc---------------cccccccccccchhHHHHcCCCCCEEEeCcCCCcCEEEeC
Confidence 566655533 3899999999999999999999999999999999999997
|
The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: |
| >cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=189.91 Aligned_cols=173 Identities=20% Similarity=0.297 Sum_probs=112.0
Q ss_pred CHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeE
Q 011766 233 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKV 312 (478)
Q Consensus 233 ~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~ 312 (478)
.++.+.+.++.+++.++++..|+...... . ...++. .+. ...|.....++.++++ +.|..+
T Consensus 119 ~~~~l~~~i~~A~~~g~~v~~Ha~g~~~~--~----------L~a~l~-aGi-----~~dH~~~~~eea~e~l-~~G~~i 179 (422)
T cd01295 119 GDDEMLAKIQAAKKAGKPVDGHAPGLSGE--E----------LNAYMA-AGI-----STDHEAMTGEEALEKL-RLGMYV 179 (422)
T ss_pred CcHHHHHHHHHHHhCCCEEEEeCCCCCHH--H----------HHHHHH-cCC-----CCCcCCCcHHHHHHHH-HCCCEE
Confidence 55678888899999999999999765421 0 011111 221 1247676666666665 789988
Q ss_pred EECccchhhccCCCcHHHHHH--CCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHh
Q 011766 313 SHCPASAMRMLGFAPIKEMLH--ADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMAT 390 (478)
Q Consensus 313 ~~~p~~~~~~~~~~~~~~~~~--~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T 390 (478)
.+.+.+.... ...+...+. .+.+++++||.+.. . ++............ . ...++++++|++++|
T Consensus 180 ~i~~g~~~~~--~~~~~~~l~~~~~~~i~l~TD~~~~-~--~~~~~g~~~~v~r~---a------~~~g~s~~eal~~aT 245 (422)
T cd01295 180 MLREGSIAKN--LEALLPAITEKNFRRFMFCTDDVHP-D--DLLSEGHLDYIVRR---A------IEAGIPPEDAIQMAT 245 (422)
T ss_pred EEECcccHhh--HHHHHHhhhhccCCeEEEEcCCCCc-h--hhhhcchHHHHHHH---H------HHcCCCHHHHHHHHh
Confidence 8776543110 111112222 47899999998532 1 11100011111100 0 013699999999999
Q ss_pred HHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECC
Q 011766 391 INGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNK 457 (478)
Q Consensus 391 ~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g 457 (478)
.|||+.+++ +++|+|++|+.|||++++.. ...++..||++|+.||+.-
T Consensus 246 ~n~A~~~gl-~~~G~i~~G~~AD~vv~~~~------------------~~~~v~~v~~~G~~v~~r~ 293 (422)
T cd01295 246 INPAECYGL-HDLGAIAPGRIADIVILDDL------------------ENFNITTVLAKGIAVVERH 293 (422)
T ss_pred HHHHHHcCC-CCCcccCCCCcCCEEEECCC------------------CCCceEEEEECCeEEEEec
Confidence 999999999 66899999999999999852 1258999999999998643
|
This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea. |
| >COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=175.33 Aligned_cols=332 Identities=19% Similarity=0.189 Sum_probs=195.8
Q ss_pred CccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhh-----hhccCCCeEEeCCCCEEeecccccccccc
Q 011766 16 GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQ-----QFSQMADQIIDLQSQILLPGFVNTHVHTS 90 (478)
Q Consensus 16 ~~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~-----~~~~~~~~viD~~G~~v~PGfID~H~H~~ 90 (478)
..-.|++|.|+.|++.. -+.++||.|+||||+.||+...-.. -+-+...++|-++|++|..|-||+|+|+.
T Consensus 64 ~~~~D~VITNa~IiD~~----Gi~KADiGikdGrI~~IGKaGNPd~~dgV~iiiG~sTe~iagEg~I~TAGGiDtHiHfI 139 (568)
T COG0804 64 AGALDLVITNALIIDYW----GIVKADIGIKDGRIAGIGKAGNPDIMDGVTIIIGPSTEIIAGEGKIVTAGGIDTHIHFI 139 (568)
T ss_pred cCcccEEEeeeEEEecc----ceEEeecccccceEEEeecCCCCCccCCceEEeccccceecCCceEEeeccccceeEEe
Confidence 45579999999999752 2467899999999999998542110 11234668999999999999999999982
Q ss_pred hhhhccccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCc------------cCHH---HHHH
Q 011766 91 QQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG------------QHVS---EMAK 155 (478)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~------------~~~~---~~~~ 155 (478)
- .+.+.+++.+||||+...|. ...+ .+++
T Consensus 140 ~------------------------------------Pqqi~~Al~sGiTtmiGGGtGpa~Gt~aTT~TpG~w~i~rMl~ 183 (568)
T COG0804 140 C------------------------------------PQQIEEALASGITTMIGGGTGPADGTNATTCTPGPWHIARMLQ 183 (568)
T ss_pred c------------------------------------HHHHHHHHhcCcEEEecCccCCCCCcccccccCCHHHHHHHHH
Confidence 1 22345689999999986431 1122 3334
Q ss_pred HHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHH
Q 011766 156 AVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDR 235 (478)
Q Consensus 156 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (478)
.++...+..-+ . +.+-. .....+.+....+.-. +..|+.+..++.
T Consensus 184 a~d~~p~N~g~----l--gKGn~-------------------------s~~~~L~Eqi~aGa~G----lKlHEDWG~Tpa 228 (568)
T COG0804 184 AADGLPMNIGF----L--GKGNA-------------------------SNPAPLAEQIEAGAIG----LKLHEDWGATPA 228 (568)
T ss_pred hhhcCceeeEE----e--ecCCC-------------------------CCchhHHHHHhhccce----eEeecccCCCHH
Confidence 33333332211 1 11100 0111122222322222 556888888999
Q ss_pred HHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccC-------ChhHHHHHHhc
Q 011766 236 LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV-------NHTEIGLLSRA 308 (478)
Q Consensus 236 ~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~-------~~~~~~~~~~~ 308 (478)
.+..++..|.+++++|.+|............ .+. .+..|. .|..|. .|+.++.+...
T Consensus 229 aI~~~L~VAD~~DvqVaiHtDTLNEsGfvEd-----------Ti~---A~~gRt--IHtyHtEGAGGGHAPDiikv~~~~ 292 (568)
T COG0804 229 AIDTCLSVADEYDVQVAIHTDTLNESGFVED-----------TIA---AIKGRT--IHTYHTEGAGGGHAPDIIKVAGQP 292 (568)
T ss_pred HHHHHHhhhhhhceEEEEeecccccccchHh-----------HHH---HhcCce--eEEeeccCCCCCCccHHHHHccCC
Confidence 9999999999999999999864322111000 011 111111 121111 12333333222
Q ss_pred CCe-EEECcc--------------------ch-------------hhccCCCcHHHHHHCCCcEEEcCCCCCCCCCcC-H
Q 011766 309 GVK-VSHCPA--------------------SA-------------MRMLGFAPIKEMLHADICVSLGTDGAPSNNRMS-I 353 (478)
Q Consensus 309 ~~~-~~~~p~--------------------~~-------------~~~~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~-~ 353 (478)
++- -++.|+ .+ .|...+..-.-|.+-|+.-.++||+-+.+.-.. .
T Consensus 293 NvLPsSTNPT~PytvNT~~EhlDMlMVcHhL~p~ipeDvaFAeSRIR~eTIAAEdiLhDmGafSmisSDSQAMGRvGEvi 372 (568)
T COG0804 293 NVLPSSTNPTRPYTVNTIDEHLDMLMVCHHLDPRIPEDVAFAESRIRPETIAAEDILHDMGAFSMISSDSQAMGRVGEVI 372 (568)
T ss_pred CcCcCCCCCCCCcccccHHHhhhhhhhhccCCCCCcchhhhhhhccchhhhhHHHHHhhccceEEeccchHhhhccchhh
Confidence 221 111111 00 011112222356788999999999865433222 2
Q ss_pred HHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhh
Q 011766 354 VDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITS 433 (478)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~ 433 (478)
.+.++.+......+..+..-....-.+-...-+..+|.|||-..|+++.+|++++||.||||+|++--|
T Consensus 373 ~RtwQtA~kmK~qrG~L~~d~~~nDN~RvkRYiaKyTINPAIthGis~~vGSvEvGK~ADlVLW~PaFF----------- 441 (568)
T COG0804 373 TRTWQTADKMKKQRGALPEDAGGNDNFRVKRYIAKYTINPAITHGISHEVGSVEVGKLADLVLWDPAFF----------- 441 (568)
T ss_pred hhHHHHHHHHHHhcCCCCCCCCCCccHHHhhhhhheecCHHHhcccchhccceeccceeeeeeechhhc-----------
Confidence 233444444443333322211112235678889999999999999999999999999999999998633
Q ss_pred hhhccCCCCeeEEEEccEEEEE
Q 011766 434 LVYCMRTENVVSVMCNGQWVMK 455 (478)
Q Consensus 434 ~~~~~~~~~v~~v~v~G~~v~~ 455 (478)
.-++..|+++|-+.+.
T Consensus 442 ------GvKP~~vlkgG~ia~a 457 (568)
T COG0804 442 ------GVKPELVLKGGMIAWA 457 (568)
T ss_pred ------CCCcceEEecceeeee
Confidence 3588899999988764
|
|
| >cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=188.77 Aligned_cols=164 Identities=16% Similarity=0.161 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEE
Q 011766 235 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 314 (478)
Q Consensus 235 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~ 314 (478)
+.+.++++++++.+++++++..........+ ......+......+..|...++++++.. .+....+
T Consensus 172 ~~v~~~~~la~~~~~~i~i~h~ss~~~l~~i-----------~~~~~~G~~~~~e~~~h~L~ld~~~~~~---~~~~~k~ 237 (374)
T cd01317 172 IMVARDLELAEATGARVHFQHLSTARSLELI-----------RKAKAKGLPVTAEVTPHHLLLDDEALES---YDTNAKV 237 (374)
T ss_pred HHHHHHHHHHHHhCCcEEEEeCCCHHHHHHH-----------HHHHHCCCCEEEEecHHHHhcCHHHHhc---cCCceEE
Confidence 3677889999999999998554443322221 1122223333334556888888887643 4666677
Q ss_pred CccchhhccCCCcHHHHHHCCCcEEEcCCCCCCCCCcC---HHH--------HHHHHHHHhcccccccCCCCCCCCCCHH
Q 011766 315 CPASAMRMLGFAPIKEMLHADICVSLGTDGAPSNNRMS---IVD--------EMYLASLINKGREVFANGTTDPAALPAE 383 (478)
Q Consensus 315 ~p~~~~~~~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ls~~ 383 (478)
+|...-. .+..++.++++.|+.+++|||+.++..... ++. ++.+..+..... ....+|++
T Consensus 238 ~Pplr~~-~~~~~l~~~~~~G~i~~igsDh~p~~~~~k~~~~~~~~~Gi~g~e~~l~~~~~~~~--------~~~~~~~~ 308 (374)
T cd01317 238 NPPLRSE-EDREALIEALKDGTIDAIASDHAPHTDEEKDLPFAEAPPGIIGLETALPLLWTLLV--------KGGLLTLP 308 (374)
T ss_pred cCCCCCH-HHHHHHHHHHhcCCceEEEcCCCCCCHHHccCCHhhCCCcHhHHHHHHHHHHHHHH--------HcCCCCHH
Confidence 7753211 346788899999999999999988743322 111 333333222111 12358999
Q ss_pred HHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCC
Q 011766 384 TVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWP 423 (478)
Q Consensus 384 ~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~ 423 (478)
++++++|.|||+++|+. .|+|++|++|||+++|.+..+
T Consensus 309 ~~~~~~t~npA~~lgl~--~G~l~~G~~ADlvi~d~~~~~ 346 (374)
T cd01317 309 DLIRALSTNPAKILGLP--PGRLEVGAPADLVLFDPDAEW 346 (374)
T ss_pred HHHHHHHHHHHHHhCCC--CCcccCCCcCCEEEECCCCCE
Confidence 99999999999999995 399999999999999987443
|
This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth. |
| >KOG3892 consensus N-acetyl-glucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-21 Score=162.90 Aligned_cols=357 Identities=16% Similarity=0.171 Sum_probs=184.7
Q ss_pred eeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccC
Q 011766 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (478)
Q Consensus 20 ~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~ 99 (478)
-+.|.|++|+.. ..+...+++|++|||..-.+ +--+.-..+++.|||.|.++.|||||.....++
T Consensus 13 llQFtNCrilR~----g~l~~edlWVR~GRIldpe~---vFFeErt~Ad~riDCgG~IlaPGfIDlQiNGGf-------- 77 (407)
T KOG3892|consen 13 LLQFTNCRILRG----GKLLREDLWVRGGRILDPEK---VFFEERTVADERIDCGGRILAPGFIDLQINGGF-------- 77 (407)
T ss_pred eeeeeeeEEeeC----CceeehheeEeCCeecCccc---ccceeccchhheeccCCeeecCceEEEEecCcc--------
Confidence 357889999963 23455699999999975332 111011135678999999999999999988743
Q ss_pred CCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCHHHHHHHH------HHhCCeEEEecccccC
Q 011766 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAV------ELLGLRACLVQSTMDC 173 (478)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~ 173 (478)
+..-+...++........+++++++|+|+++......+.+..... ...+.+..--......
T Consensus 78 -------------GvDFS~dte~~~eGvAlVAr~ll~hGvtsf~Pt~~tsp~~~YHkilP~ip~~~~~p~GaG~LG~HlE 144 (407)
T KOG3892|consen 78 -------------GVDFSQDTEDVGEGVALVARQLLSHGVTSFCPTLVTSPPEVYHKILPQIPVKSGGPHGAGVLGLHLE 144 (407)
T ss_pred -------------ccccccchhhhhhhHHHHHHHHHhcCCCcCCCccccCCchhhhhhccccccccCCCCccceeeeecc
Confidence 222233444444555667788999999998874322222211111 1111111111112223
Q ss_pred CCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeE
Q 011766 174 GEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHM 253 (478)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~ 253 (478)
|+.++...+....+.++. .+.......+...+.+. .++++. .+.....-.+|.+..+ ...|.-+..
T Consensus 145 GPFIs~~KrG~HPE~~i~-------s~~~~~~~~l~~tYGsl--eni~Iv-TlAPEl~~~~evi~~l----v~~gitVsl 210 (407)
T KOG3892|consen 145 GPFISREKRGAHPEAHIR-------SFEADAFQDLLATYGSL--ENIRIV-TLAPELGGAQEVIRAL----VARGITVSL 210 (407)
T ss_pred CCccChhhcCCCHHHHHh-------ccCccHHHHHHHHhCCc--cceEEE-EecccccCcHHHHHHH----HhcceEEee
Confidence 333433333333333222 11111233333343333 345543 2322222234444443 334444443
Q ss_pred -eccCChhhhH-HHhhhcCCCCchH-HHHhhhCCC-----------------CCC----eeeeeeccCChhHHHHHHhcC
Q 011766 254 -HVAEIPYENQ-VVMDTRKVDHGTV-TFLDKIEFL-----------------QNN----LLSAHTVWVNHTEIGLLSRAG 309 (478)
Q Consensus 254 -H~~~~~~~~~-~~~~~~~~~~~~~-~~l~~~~~~-----------------~~~----~~i~h~~~~~~~~~~~~~~~~ 309 (478)
|........+ .+.. +...+ ..++++-.. ..+ -+|+.+.+..+..++.+.+.+
T Consensus 211 GHS~A~L~~gE~AV~s----Gat~ITHLFNAMlpfHHRDPGlvGLLtSd~lp~gr~iyyGiIsDG~HThpaALRIAyrth 286 (407)
T KOG3892|consen 211 GHSVADLRAGEDAVWS----GATFITHLFNAMLPFHHRDPGLVGLLTSDRLPAGRCIYYGIISDGTHTHPAALRIAYRTH 286 (407)
T ss_pred ccchhccCcHHHHHhc----cchHHHHHHHhccccccCCCceeEEeecCCCCCCCeEEEEEecCCccCChhHhhhhhhcC
Confidence 3322221111 1110 00112 233332111 112 267888888888888776654
Q ss_pred CeEEECccchhhccCCCcHHHHH------HCCC-cEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCH
Q 011766 310 VKVSHCPASAMRMLGFAPIKEML------HADI-CVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPA 382 (478)
Q Consensus 310 ~~~~~~p~~~~~~~~~~~~~~~~------~~gv-~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 382 (478)
-.-.+..+......++.+-..-+ -.|. ...-||..... +. .+|...... ++.+.+.|.
T Consensus 287 pqGLvLVTDAI~ALGl~~GvH~lGqq~v~Vkgl~A~~aGT~Tl~G--Si---ApMd~CvRh----------f~kATgCs~ 351 (407)
T KOG3892|consen 287 PQGLVLVTDAIPALGLGNGVHTLGQQEVEVKGLTAYVAGTKTLSG--SI---APMDVCVRH----------FLKATGCSM 351 (407)
T ss_pred CCceEEEecchhhcccccccccccceeEEEcceEEEeeccccccc--cc---cCcHHHHHH----------HHHhcCCcH
Confidence 33222222222221111111000 0111 11123332111 11 112111111 112347999
Q ss_pred HHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECC
Q 011766 383 ETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNK 457 (478)
Q Consensus 383 ~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g 457 (478)
+-|++++|..||+.||+++.+|+|..|.+||||++|.+ ..|..+|+.|+.|++..
T Consensus 352 e~AleaAtlhPAqlLg~ek~KGTLDfG~dADFVllDd~--------------------l~V~aT~isG~~V~~a~ 406 (407)
T KOG3892|consen 352 ESALEAATLHPAQLLGLEKSKGTLDFGADADFVLLDDS--------------------LHVQATYISGELVWQAD 406 (407)
T ss_pred HHHHhhhccChHHhhccccccccccccccCceEEEccc--------------------eEEEEEEEccEEEEecc
Confidence 99999999999999999999999999999999999986 68999999999998753
|
|
| >PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-21 Score=188.07 Aligned_cols=177 Identities=23% Similarity=0.225 Sum_probs=126.6
Q ss_pred EeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHH
Q 011766 224 FGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIG 303 (478)
Q Consensus 224 ~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~ 303 (478)
...+.....+++.+.++++.+++.|+++.+|+.++......+ ..+.... .+..+.|+..+++++++
T Consensus 214 ~~~~g~~~~~~~~l~~~v~~a~~~g~~v~vHa~gd~a~~~~l-----------~a~~~~~---~~~~i~h~~~~~~~~~~ 279 (404)
T PF07969_consen 214 VHISGLPSFDPEELEELVRAAREAGLQVAVHAIGDRAIDEAL-----------DAIEAAR---ARGRIEHAELIDPDDIE 279 (404)
T ss_dssp EEETC--SSSHHHHHHHHHHHHHCT-EEEEEEESHHHHHHHH-----------HHHHHHT---CCHEEEEHCBCCHHHHH
T ss_pred ccccccccccchhHHHHHHHHHhcCCeeEEEEcCCchHHhHH-----------HHHHhhc---ccceeeccccCCHHHHH
Confidence 344555667777799999999999999999997765543321 2222221 22268999999999999
Q ss_pred HHHhcCCeEEECccch--------------hhccCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhccccc
Q 011766 304 LLSRAGVKVSHCPASA--------------MRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREV 369 (478)
Q Consensus 304 ~~~~~~~~~~~~p~~~--------------~~~~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (478)
++++.++.+.++|... .+.....+++.+++.|++++++||++. ...+++..+..+.........
T Consensus 280 ~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~v~~gsD~p~--~~~~P~~~~~~~~~~~~~~~~ 357 (404)
T PF07969_consen 280 RMAELGVTASVQPHFLFSWGGEWYEERLGPERARRIYPIRSLLDAGVRVALGSDAPV--SPPNPFRGIWAAVTRQMAGER 357 (404)
T ss_dssp HHHHHTTEEEECCTHHHHETEETHHHHHHHHCGGGBTHHHHHHHCTTEEEE--TTTT--SSCCHHHHHHHHHHHHHCHHT
T ss_pred HHHHhCCccccChhHhhhccchhhhhhhhhHHHHHHhHHHHHHhccCceecCcCCcc--cccCcchhhhhhhcccccccc
Confidence 9999999999999211 122456899999999999999999865 345677777766655443211
Q ss_pred ccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEE
Q 011766 370 FANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVV 416 (478)
Q Consensus 370 ~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv 416 (478)
.......++.+|++|||+++|++||+.+|+++++|+|++||.|||||
T Consensus 358 ~~~~~~~~~~ls~~eAl~~~T~~~A~~~g~~~~~Gsl~~Gk~AD~vV 404 (404)
T PF07969_consen 358 SGPVLGPEQRLSLEEALRAYTSNPARALGLEDRKGSLEPGKLADFVV 404 (404)
T ss_dssp HHHCCGGTGSSHHHHHHHHTTHHHHHHTT-TTTSSSSSTTSBS-EEE
T ss_pred ccccccccccCCHHHHHHHHhHHHHHHcCCCCCcceECCCCCcCeEC
Confidence 11111223579999999999999999999999899999999999997
|
Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A .... |
| >cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.3e-20 Score=174.79 Aligned_cols=177 Identities=19% Similarity=0.170 Sum_probs=106.3
Q ss_pred CCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhh--hc---CCCCc-------hHHHHhhhCCCCCCeeeeeeccCCh
Q 011766 232 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD--TR---KVDHG-------TVTFLDKIEFLQNNLLSAHTVWVNH 299 (478)
Q Consensus 232 ~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~--~~---~~~~~-------~~~~l~~~~~~~~~~~i~h~~~~~~ 299 (478)
.+...+.++++.+. ..+.+|+.+..-....... .. ..... ....+.-....+.+..+.|.+. .
T Consensus 108 ~~~~~l~~~~~~~~---~~v~~H~E~~~l~~~~~~~~~~~~~~~~~~P~~aE~~av~r~~~la~~~~~~~hi~Hvs~--~ 182 (361)
T cd01318 108 DDEETLERIFAEGS---VLVTFHAEDEDRLRENRKELKGESAHPRIRDAEAAAVATARALKLARRHGARLHICHVST--P 182 (361)
T ss_pred CCHHHHHHHHHhcC---CeEEEeCCChHHHHHHHhhhhhccCCCCcCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCC--H
Confidence 45666776666653 6788999764321111110 00 00000 0112222333456777777775 4
Q ss_pred hHHHHHHhc--CCeEEECccchhhc-----------cCCCcHH---------HHHHCCCcEEEcCCCCCCCCC-------
Q 011766 300 TEIGLLSRA--GVKVSHCPASAMRM-----------LGFAPIK---------EMLHADICVSLGTDGAPSNNR------- 350 (478)
Q Consensus 300 ~~~~~~~~~--~~~~~~~p~~~~~~-----------~~~~~~~---------~~~~~gv~v~~gsD~~~~~~~------- 350 (478)
+.++++++. ++.+.+||.+.... .-.+|+| +.++.|...+++||+.|....
T Consensus 183 ~~~~~i~~~k~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~G~id~i~SDh~P~~~~~k~~~~~ 262 (361)
T cd01318 183 EELKLIKKAKPGVTVEVTPHHLFLDVEDYDRLGTLGKVNPPLRSREDRKALLQALADGRIDVIASDHAPHTLEEKRKGYP 262 (361)
T ss_pred HHHHHHHHhCCCeEEEeCHHHhhcCHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhCCCCCEEeeCCCCCCHHHccCChh
Confidence 567777666 78899999853211 1123433 458899999999998765211
Q ss_pred -----cCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCC
Q 011766 351 -----MSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPM 424 (478)
Q Consensus 351 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~ 424 (478)
..-.+.+ ...+.. .....+++++++++++|.|||+++|+.+ +|+|++|++|||+|+|++..+.
T Consensus 263 ~a~~G~~g~e~~-l~~~~~---------~v~~~~l~l~~a~~~~t~nPA~~lgl~~-~G~i~~G~~ADlvv~d~~~~~~ 330 (361)
T cd01318 263 AAPSGIPGVETA-LPLMLT---------LVNKGILSLSRVVRLTSHNPARIFGIKN-KGRIAEGYDADLTVVDLKEERT 330 (361)
T ss_pred hCCCCCccHHHH-HHHHHH---------HHHcCCCCHHHHHHHHhHHHHHHhCCCC-CCccCCCCcCCEEEEeCCCCEE
Confidence 0001111 111100 0112369999999999999999999954 7999999999999999985443
|
This group contains the archeal members of the DHOase family. |
| >PRK06886 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-18 Score=162.01 Aligned_cols=272 Identities=18% Similarity=0.175 Sum_probs=176.7
Q ss_pred cccccccccchhhhcccc-----CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCc-------c
Q 011766 81 GFVNTHVHTSQQLAKGIA-----DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-------Q 148 (478)
Q Consensus 81 GfID~H~H~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~-------~ 148 (478)
||||+|+|++.....+.. ...++.+.+.. +......++.++.+......+..++.+|+|.++..-. .
T Consensus 21 gfv~~H~HlDk~~~~~~~~~~~~~~g~l~e~i~~-~~~~k~~~t~~dv~~Ra~~~l~~~~~~Gtt~iRtHvdvd~~~~l~ 99 (329)
T PRK06886 21 GWVNAHAHADRAFTMTPEKIAIYHYANLQQKWDL-VDEVKRNSTVEDYYARFSQAIELMISQGVTAFGTFVDIDPICEDR 99 (329)
T ss_pred CCccccccccccccCCCccccccCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHHHHHHHHcCcccEeeeeccCCCcccc
Confidence 899999999876643321 23444444321 1122456777888888889999999999999886421 1
Q ss_pred CHHHHHHHHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccc
Q 011766 149 HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQ 228 (478)
Q Consensus 149 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (478)
....+.+..+...-..-+....+. ..++ .. . ...+++++.... .+.+.. + ++.
T Consensus 100 ~~~a~~~~r~~~~~~idlq~vafP-q~g~----~~-------~------------~~~~l~~~al~~-advvGG-i-P~~ 152 (329)
T PRK06886 100 AIIAAHKAREVYKHDIILKFANQT-LKGV----IE-------P------------TAKKWFDIGSEM-VDMIGG-L-PYR 152 (329)
T ss_pred HHHHHHHHHHHhcCcceEEEEecC-hhhc----cC-------c------------cHHHHHHHHHHh-CCEEeC-c-cCC
Confidence 233344443433322222211111 0111 00 0 233444333222 122211 1 222
Q ss_pred ---cccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhH----
Q 011766 229 ---IMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE---- 301 (478)
Q Consensus 229 ---~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~---- 301 (478)
....+.+.+..++++|+++|+++++|+.+........... ........+.. .+++++||+.++..+
T Consensus 153 ~~~~~~~~~e~l~~~~~lA~~~g~~Id~Hlde~~~~~~~~le~------l~~~~~~~Gl~-grV~~sH~~~L~~~~~~~~ 225 (329)
T PRK06886 153 DELDYGRGLEAMDILLDTAKSLGKMVHVHVDQFNTPKEKETEQ------LCDKTIEHGMQ-GRVVAIHGISIGAHSKEYR 225 (329)
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCCeEEeECCCCchhHHHHHH------HHHHHHHcCCC-CCEEEEEeccccCcChhhH
Confidence 1356788999999999999999999999865443222111 11122245655 479999999998764
Q ss_pred ---HHHHHhcCCeEEECccchhh----------ccCCCcHHHHHHCCCcEEEcCCCCCC----CCCcCHHHHHHHHHHHh
Q 011766 302 ---IGLLSRAGVKVSHCPASAMR----------MLGFAPIKEMLHADICVSLGTDGAPS----NNRMSIVDEMYLASLIN 364 (478)
Q Consensus 302 ---~~~~~~~~~~~~~~p~~~~~----------~~~~~~~~~~~~~gv~v~~gsD~~~~----~~~~~~~~~~~~~~~~~ 364 (478)
++++++.|+.++.||.+|+. ..+..|+++|+++||+|++|||+... .++.+|++.++.+....
T Consensus 226 ~~~i~~La~agi~Vv~~P~snl~l~~~~~~~p~~rGv~pv~eL~~aGV~V~lGtDnv~D~~~p~g~~Dmle~~~l~~~~~ 305 (329)
T PRK06886 226 YRLYQKMREADMMVIACPMAWIDSNRKEDLMPFHNALTPADEMIPEGITVALGTDNICDYMVPLCEGDMWQELSLLAAGC 305 (329)
T ss_pred HHHHHHHHHcCCeEEECchhhhhhccccccCcCCCCCCCHHHHHHCCCeEEEecCCCcccCCCCCCCCHHHHHHHHHHHc
Confidence 99999999999999998752 25789999999999999999998642 35689999998876543
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 011766 365 KGREVFANGTTDPAALPAETVLRMATINGAKSVLWD 400 (478)
Q Consensus 365 ~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~ 400 (478)
. ..+..++++++|.++|+.+|++
T Consensus 306 ~-------------~~~~~~~l~maT~~gAraLgl~ 328 (329)
T PRK06886 306 R-------------FYDLDEMVNIASINGRKVLGLE 328 (329)
T ss_pred C-------------CCCHHHHHHHHhhhHHHHhCCC
Confidence 2 1468999999999999999984
|
|
| >cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-18 Score=158.78 Aligned_cols=163 Identities=18% Similarity=0.233 Sum_probs=119.5
Q ss_pred CCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCe
Q 011766 232 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVK 311 (478)
Q Consensus 232 ~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~ 311 (478)
.+.+.++++++.|++.|+++.+|........... ...+.. ++.|. .+.+.++.+++.|+.
T Consensus 160 ~~~~~~~~iv~~A~~~gl~vasH~d~~~~~v~~a--------------~~~Gv~----~~E~p--~t~e~a~~a~~~G~~ 219 (325)
T cd01306 160 YAPANRSELAALARARGIPLASHDDDTPEHVAEA--------------HELGVV----ISEFP--TTLEAAKAARELGLQ 219 (325)
T ss_pred cCHHHHHHHHHHHHHCCCcEEEecCCChHHHHHH--------------HHCCCe----eccCC--CCHHHHHHHHHCCCE
Confidence 4567899999999999999999997654322211 112211 12333 578899999999999
Q ss_pred EEECccchhhc---cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHH
Q 011766 312 VSHCPASAMRM---LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRM 388 (478)
Q Consensus 312 ~~~~p~~~~~~---~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~ 388 (478)
++.++...++. .+..+++++++.|+.++++||+.+. +++....... ...+++++++|++
T Consensus 220 vv~gapn~lrg~s~~g~~~~~~ll~~Gv~~al~SD~~p~----sll~~~~~la--------------~~~gl~l~eAl~~ 281 (325)
T cd01306 220 TLMGAPNVVRGGSHSGNVSARELAAHGLLDILSSDYVPA----SLLHAAFRLA--------------DLGGWSLPEAVAL 281 (325)
T ss_pred EEecCcccccCccccccHhHHHHHHCCCeEEEEcCCCcH----hHHHHHHHHH--------------HHcCCCHHHHHHH
Confidence 99887654443 3456889999999999999999643 2332221111 0135999999999
Q ss_pred HhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEcc
Q 011766 389 ATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNG 450 (478)
Q Consensus 389 ~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G 450 (478)
+|.|||+++|++ ++|+|++|+.||||+++.+. ....+..||++|
T Consensus 282 aT~nPA~~lGl~-d~G~I~~G~~ADlvvvd~~~-----------------~~p~v~~v~~~G 325 (325)
T cd01306 282 VSANPARAVGLT-DRGSIAPGKRADLILVDDMD-----------------GVPVVRTVWRGG 325 (325)
T ss_pred HhHHHHHHcCCC-CCCCcCCCCCCCEEEEeCCC-----------------CCCccceEEeCc
Confidence 999999999997 46999999999999999861 124788899887
|
C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria. |
| >cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-19 Score=169.73 Aligned_cols=179 Identities=20% Similarity=0.222 Sum_probs=110.9
Q ss_pred CCCCCCeEEEEeccc-c-ccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeee
Q 011766 214 HAADGRIRIWFGIRQ-I-MNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLS 291 (478)
Q Consensus 214 ~~~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 291 (478)
..+...++.+..... . ...+.+.+.+.++.+.+.|.++.+|+.. ...+... .+.+..+
T Consensus 92 ~~Gv~g~K~f~~~~~~~~~~~~~~~l~~~~~~~~~~g~~v~~H~Er-----------------~~~la~~---~g~~l~i 151 (337)
T cd01302 92 DAGINSLKVFMNYYFGELFDVDDGTLMRTFLEIASRGGPVMVHAER-----------------AAQLAEE---AGANVHI 151 (337)
T ss_pred HcCCcEEEEEEeccCCCccccCHHHHHHHHHHHHhcCCeEEEeHHH-----------------HHHHHHH---hCCcEEE
Confidence 334445665443211 1 1456778888888898899999999971 1222222 2345667
Q ss_pred eeeccCC-hhHHHHHHhcCC--eEEECccchhhc-----------c---------CCCcHHHHHHCCCcEEEcCCCCCCC
Q 011766 292 AHTVWVN-HTEIGLLSRAGV--KVSHCPASAMRM-----------L---------GFAPIKEMLHADICVSLGTDGAPSN 348 (478)
Q Consensus 292 ~h~~~~~-~~~~~~~~~~~~--~~~~~p~~~~~~-----------~---------~~~~~~~~~~~gv~v~~gsD~~~~~ 348 (478)
.|.+... -+.++.+++.|. .+.+||...... . ....+...+..|+..+++||+.+..
T Consensus 152 ~Hiss~~~le~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~id~i~sDh~p~~ 231 (337)
T cd01302 152 AHVSSGEALELIKFAKNKGVKVTCEVCPHHLFLDESMLRLNGAWGKVNPPLRSKEDREALWEGVKNGKIDTIASDHAPHS 231 (337)
T ss_pred EeCCCHHHHHHHHHHHHCCCcEEEEcChhhheeCHHHhhCCCceEEEeCCCCCHHHHHHHHHHHhCCCCCEEecCCCCCC
Confidence 7766422 244555555554 456778753210 0 1123346778899999999998763
Q ss_pred CCc-----CHHH--------HHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEE
Q 011766 349 NRM-----SIVD--------EMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMV 415 (478)
Q Consensus 349 ~~~-----~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlv 415 (478)
... +++. +.....+.... .+.+++++++++++|.|||+++|+.+ .|+|++|++|||+
T Consensus 232 ~~~k~~~~~~~~a~~G~~g~e~~l~~~~~~~---------~~~~i~~~~~~~~~s~~pA~~~gl~~-~g~i~~G~~ADlv 301 (337)
T cd01302 232 KEEKESGKDIWKAPPGFPGLETRLPILLTEG---------VKRGLSLETLVEILSENPARIFGLYP-KGTIAVGYDADLV 301 (337)
T ss_pred HHHhccCCCcccCCCCcccHHHHHHHHHHHH---------HhcCCCHHHHHHHHHHHHHHHcCCCC-CCccccCCcCCEE
Confidence 110 1111 11122222111 12369999999999999999999965 5999999999999
Q ss_pred EEcCCCC
Q 011766 416 VVDPFSW 422 (478)
Q Consensus 416 v~d~~~~ 422 (478)
|+|.+..
T Consensus 302 i~d~~~~ 308 (337)
T cd01302 302 IVDPKKE 308 (337)
T ss_pred EEeCCCc
Confidence 9999843
|
Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines. |
| >PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-18 Score=162.96 Aligned_cols=78 Identities=38% Similarity=0.526 Sum_probs=58.9
Q ss_pred CCCcHHHHHHCCCcEEEcCCCCCCC--CCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCC
Q 011766 324 GFAPIKEMLHADICVSLGTDGAPSN--NRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDN 401 (478)
Q Consensus 324 ~~~~~~~~~~~gv~v~~gsD~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~ 401 (478)
...+++.++++|++++++||+.+.. .+..++..+...... .|+|+++|++++|+|||++||+++
T Consensus 225 ~~~~~~~l~~~Gv~~~l~sD~~~~~~~~~~~~~~~~~~~~~~--------------~gl~~~~al~~~T~~pA~~lgl~~ 290 (304)
T PF13147_consen 225 DRAALRELLEAGVPVALGSDHAPSSTEGSGDLLHEAMRLAVR--------------AGLSPEEALRAATSNPARILGLDD 290 (304)
T ss_dssp HHHHHHHHHHTTSSEEEEE-BBTTTTTCTTTHHHHHHHHHHH--------------TSSTHHHHHHHHTHHHHHHTTBTT
T ss_pred hhHHHHHHHhCCCeEEEEcCCcccccccccccchhhhhHHhh--------------cCCCHHHHHHHHHHHHHHHhCCCC
Confidence 3456789999999999999997642 223344333222211 269999999999999999999988
Q ss_pred CccccccCccccEE
Q 011766 402 DIGSLEAGKKADMV 415 (478)
Q Consensus 402 ~~G~l~~G~~ADlv 415 (478)
++|+|++|++||||
T Consensus 291 ~~G~i~~G~~ADlv 304 (304)
T PF13147_consen 291 DKGSIAPGKDADLV 304 (304)
T ss_dssp TSSSTSTTSB-EEE
T ss_pred CCccCCCCCCCCcC
Confidence 89999999999997
|
... |
| >cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-16 Score=147.49 Aligned_cols=259 Identities=24% Similarity=0.343 Sum_probs=169.8
Q ss_pred ccccccccchhhhccccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC--------HHHH
Q 011766 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH--------VSEM 153 (478)
Q Consensus 82 fID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~--------~~~~ 153 (478)
|||+|+|+.....++......+ .| ....+.++.+........+++++|||++.+++... ....
T Consensus 1 ~ID~H~H~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~ 71 (275)
T cd01292 1 FIDTHVHLDGSALRGTRLNLEL-KE--------AEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTTTKAAIEAV 71 (275)
T ss_pred CcccchhhHHHHHccCCCcccc-cc--------ccccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCccccchHHHHH
Confidence 7999999987665543321111 00 34455666677777888999999999999865322 2445
Q ss_pred HHHHHHh-CCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEecccccc-
Q 011766 154 AKAVELL-GLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMN- 231 (478)
Q Consensus 154 ~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 231 (478)
.+..... |++............ .. .....+ ...+.+.+....+... +..+....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~------------~~~~~i~~~~~~~~~g----i~~~~~~~~ 127 (275)
T cd01292 72 AEAARASAGIRVVLGLGIPGVPA----AV----DEDAEA------------LLLELLRRGLELGAVG----LKLAGPYTA 127 (275)
T ss_pred HHHHHHhcCeeeEEeccCCCCcc----cc----chhHHH------------HHHHHHHHHHhcCCee----EeeCCCCCC
Confidence 5555655 666655433322110 00 001111 2333344432211222 23333333
Q ss_pred --CCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcC
Q 011766 232 --ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAG 309 (478)
Q Consensus 232 --~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~ 309 (478)
.+.+.+.++++.++++++++.+|+.+.... .......++.... ..+.++.|+..++++.++++++.|
T Consensus 128 ~~~~~~~~~~~~~~a~~~~~~i~~H~~~~~~~----------~~~~~~~~~~~~~-~~~~~~~H~~~~~~~~~~~~~~~g 196 (275)
T cd01292 128 TGLSDESLRRVLEEARKLGLPVVIHAGELPDP----------TRALEDLVALLRL-GGRVVIGHVSHLDPELLELLKEAG 196 (275)
T ss_pred CCCCcHHHHHHHHHHHHcCCeEEEeeCCcccC----------ccCHHHHHHHHhc-CCCEEEECCccCCHHHHHHHHHcC
Confidence 377899999999999999999999876532 0001222222222 567899999999999999999999
Q ss_pred CeEEECccchhhc----cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHH
Q 011766 310 VKVSHCPASAMRM----LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETV 385 (478)
Q Consensus 310 ~~~~~~p~~~~~~----~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 385 (478)
+.+++||..+... ....+++.+++.|+++++|||+++.....+++..++.+..... .++|.+++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lgTD~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 264 (275)
T cd01292 197 VSLEVCPLSNYLLGRDGEGAEALRRLLELGIRVTLGTDGPPHPLGTDLLALLRLLLKVLR------------LGLSLEEA 264 (275)
T ss_pred CeEEECCcccccccCCcCCcccHHHHHHCCCcEEEecCCCCCCCCCCHHHHHHHHHHHHh------------cCCCHHHH
Confidence 9999999987653 5678999999999999999999765345678887776654321 13799999
Q ss_pred HHHHhHHHHHH
Q 011766 386 LRMATINGAKS 396 (478)
Q Consensus 386 l~~~T~~pA~~ 396 (478)
++++|.|||++
T Consensus 265 ~~~~t~n~a~~ 275 (275)
T cd01292 265 LRLATINPARA 275 (275)
T ss_pred HHHHhccccCC
Confidence 99999999973
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others. |
| >cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-14 Score=136.26 Aligned_cols=245 Identities=19% Similarity=0.185 Sum_probs=161.0
Q ss_pred cCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeec-CCc-------cCH--------HHHHHHHHHhC
Q 011766 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAE-AGG-------QHV--------SEMAKAVELLG 161 (478)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~-~~~-------~~~--------~~~~~~~~~~g 161 (478)
..+.++.+|+....+.....++.++.+...+..+.++++.|||++-- ... ... ..+.+..+..|
T Consensus 46 ~~~~~l~~~l~~~~~~~~~~~~~ed~~~~~~~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~g 125 (325)
T cd01320 46 YNFSDLQDFLAKYDFGLSVLQTEEDFERLAYEYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFG 125 (325)
T ss_pred ccCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34556678887777777777788888888889999999999997521 111 111 12233334557
Q ss_pred CeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEecccc-ccCCHHHHHHH
Q 011766 162 LRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQI-MNATDRLLLET 240 (478)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 240 (478)
++..+....... .+ ..... +..+...++.. ...+. +++.+. ...+.+.+..+
T Consensus 126 i~~~l~~~~~~~---~~--------~~~~~------------~~~~~~~~~~~--~~vvg--~~l~~~~~~~~~~~~~~~ 178 (325)
T cd01320 126 IKARLILCGLRH---LS--------PESAQ------------ETLELALKYRD--KGVVG--FDLAGDEVGFPPEKFVRA 178 (325)
T ss_pred CeEEEEEEecCC---CC--------HHHHH------------HHHHHHHhccC--CCEEE--eecCCCCCCCCHHHHHHH
Confidence 777654332110 00 00011 22333333322 22233 333222 23477899999
Q ss_pred HHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccC--ChhHHHHHHhcCCeEEECccc
Q 011766 241 RDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV--NHTEIGLLSRAGVKVSHCPAS 318 (478)
Q Consensus 241 ~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~--~~~~~~~~~~~~~~~~~~p~~ 318 (478)
++.|++.|+++++|+.+....... ...+...+. ..+.|+.++ .+++++++++.|+.+++||.+
T Consensus 179 ~~~A~~~g~~v~~H~~E~~~~~~~-----------~~a~~~~g~----~~i~H~~~l~~~~~~~~~l~~~gi~v~~~P~s 243 (325)
T cd01320 179 FQRAREAGLRLTAHAGEAGGPESV-----------RDALDLLGA----ERIGHGIRAIEDPELVKRLAERNIPLEVCPTS 243 (325)
T ss_pred HHHHHHCCCceEEeCCCCCCHHHH-----------HHHHHHcCC----cccchhhccCccHHHHHHHHHcCCeEEECCCc
Confidence 999999999999999876432111 122222221 237899999 467899999999999999999
Q ss_pred hhhcc-----CCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHH
Q 011766 319 AMRML-----GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATING 393 (478)
Q Consensus 319 ~~~~~-----~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~p 393 (478)
|+... ...|++.+++.|+++++|||.++. +..+++.+++.+.... +++++| +..+|.|+
T Consensus 244 n~~l~~~~~~~~~p~~~l~~~Gv~v~lgTD~~~~-~~~~~~~e~~~~~~~~--------------~l~~~e-l~~~~~na 307 (325)
T cd01320 244 NVQTGAVKSLAEHPLRELLDAGVKVTINTDDPTV-FGTYLTDEYELLAEAF--------------GLTEEE-LKKLARNA 307 (325)
T ss_pred cccccccCCcccChHHHHHHCCCEEEECCCCCcc-cCCCHHHHHHHHHHHc--------------CCCHHH-HHHHHHHH
Confidence 88663 258999999999999999998654 3457888887766432 589999 56688999
Q ss_pred HHHcCCC
Q 011766 394 AKSVLWD 400 (478)
Q Consensus 394 A~~lgl~ 400 (478)
++...+.
T Consensus 308 ~~~~f~~ 314 (325)
T cd01320 308 VEASFLS 314 (325)
T ss_pred HHHhCCC
Confidence 9998764
|
ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases. |
| >PRK09358 adenosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-14 Score=135.68 Aligned_cols=248 Identities=18% Similarity=0.167 Sum_probs=164.2
Q ss_pred cccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCccee---ecCC-----ccCHH--------HHHHHHHH
Q 011766 96 GIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCF---AEAG-----GQHVS--------EMAKAVEL 159 (478)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv---~~~~-----~~~~~--------~~~~~~~~ 159 (478)
+.....++.+|+....++.....+.++.+...+..+.++++.|||++ .++. +.... ...+....
T Consensus 52 ~~~~~~~l~~~l~~~~~~~~~~~t~ed~~~~~~~~~~e~~~~Gvty~E~~~~p~~~~~~gl~~~~~~~a~~~~~~~a~~~ 131 (340)
T PRK09358 52 AAYDFRDLQSFLDKYDAGVAVLQTEEDLRRLAFEYLEDAAADGVVYAEIRFDPQLHTERGLPLEEVVEAVLDGLRAAEAE 131 (340)
T ss_pred ccccCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCEEEEEEeChhhhhhcCCCHHHHHHHHHHHHHHHHHh
Confidence 33345567788887777777778888989999999999999999975 2221 01111 22333445
Q ss_pred hCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEecccc-ccCCHHHHH
Q 011766 160 LGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQI-MNATDRLLL 238 (478)
Q Consensus 160 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ 238 (478)
.|++..+....... .+ .+.... ...+.++.+. ....+. +++.+. ...+++.+.
T Consensus 132 ~gi~~~li~~~~r~---~~-------~~~~~~------------~~~~~~~~~~--~~~vvg--~~l~g~e~~~~~~~~~ 185 (340)
T PRK09358 132 FGISVRLILCFMRH---FG-------EEAAAR------------ELEALAARYR--DDGVVG--FDLAGDELGFPPSKFA 185 (340)
T ss_pred cCceEEEEEEecCC---CC-------HHHHHH------------HHHHHHHHhc--CCcEEE--EeCCCcCCCCCHHHHH
Confidence 58877665433211 00 000001 2223333322 222333 344322 345778899
Q ss_pred HHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCC--hhHHHHHHhcCCeEEECc
Q 011766 239 ETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN--HTEIGLLSRAGVKVSHCP 316 (478)
Q Consensus 239 ~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~--~~~~~~~~~~~~~~~~~p 316 (478)
.+++.|++.|+++++|+.+...... ....+...+ . ..+.||.++. ++.++++++.++.+++||
T Consensus 186 ~~~~~A~~~g~~~~~H~~E~~~~~~-----------~~~al~~lg---~-~ri~Hg~~l~~~~~~~~~l~~~gi~v~~cP 250 (340)
T PRK09358 186 RAFDRARDAGLRLTAHAGEAGGPES-----------IWEALDELG---A-ERIGHGVRAIEDPALMARLADRRIPLEVCP 250 (340)
T ss_pred HHHHHHHHCCCCeEEcCCCCCchhH-----------HHHHHHHcC---C-cccchhhhhccCHHHHHHHHHcCCeEEECC
Confidence 9999999999999999997543211 112222222 2 2379999995 668999999999999999
Q ss_pred cchhhcc-----CCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhH
Q 011766 317 ASAMRML-----GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATI 391 (478)
Q Consensus 317 ~~~~~~~-----~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~ 391 (478)
.+|+... +..|+++++++|+++++|||.+... ..+++++++.+.... +++++++ ..++.
T Consensus 251 ~Sn~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~-~~~l~~e~~~~~~~~--------------~l~~~el-~~l~~ 314 (340)
T PRK09358 251 TSNVQTGAVPSLAEHPLKTLLDAGVRVTINTDDPLVF-GTTLTEEYEALAEAF--------------GLSDEDL-AQLAR 314 (340)
T ss_pred CccccccccCCcccChHHHHHHCCCEEEECCCCCccc-CCCHHHHHHHHHHHh--------------CCCHHHH-HHHHH
Confidence 9998762 4689999999999999999986553 468999988776432 5999995 56678
Q ss_pred HHHHHcCCC
Q 011766 392 NGAKSVLWD 400 (478)
Q Consensus 392 ~pA~~lgl~ 400 (478)
|+.+...++
T Consensus 315 nai~~sf~~ 323 (340)
T PRK09358 315 NALEAAFLS 323 (340)
T ss_pred HHHHHHCCC
Confidence 988887664
|
|
| >TIGR01430 aden_deam adenosine deaminase | Back alignment and domain information |
|---|
Probab=99.63 E-value=7e-14 Score=132.27 Aligned_cols=241 Identities=19% Similarity=0.221 Sum_probs=161.4
Q ss_pred CCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCC--cc-------CH--------HHHHHHHHHhCCe
Q 011766 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG--GQ-------HV--------SEMAKAVELLGLR 163 (478)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~--~~-------~~--------~~~~~~~~~~g~~ 163 (478)
.++.+|+....++.....+.++.+...+....++++.||| ..+.- .. .. ..+.+..+..|++
T Consensus 48 ~~l~~~l~~~~~~~~~~~t~e~l~~~~~~~~~e~~~~Gv~-y~E~r~~p~~~~~~g~~~~~~~~~~~~~i~~a~~~~gi~ 126 (324)
T TIGR01430 48 RDLQDFLAKYDFGVEVLRTEDDFKRLAYEYVEKAAKDGVV-YAEVFFDPQLHTNRGISPDTVVEAVLDGLDEAERDFGIK 126 (324)
T ss_pred CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCE-EEEEEeCccccccCCCCHHHHHHHHHHHHHHHHHhcCCe
Confidence 4577888877777777778888888888899999999996 44421 10 11 1233344566777
Q ss_pred EEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEecccc-ccCCHHHHHHHHH
Q 011766 164 ACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQI-MNATDRLLLETRD 242 (478)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 242 (478)
..+..+..... . .+... ...+...++.. ...+. ++..+. ...+.+.+..+++
T Consensus 127 ~~li~~~~r~~---~--------~~~~~------------~~~~~~~~~~~--~~vvg--~~l~~~e~~~~~~~~~~~~~ 179 (324)
T TIGR01430 127 SRLILCGMRHK---Q--------PEAAE------------ETLELAKPYKE--QTIVG--FGLAGDERGGPPPDFVRAFA 179 (324)
T ss_pred EEEEEEEeCCC---C--------HHHHH------------HHHHHHHhhcc--CcEEE--ecCCCCCCCCCHHHHHHHHH
Confidence 65544333210 0 00011 22222222221 12222 334332 3456888999999
Q ss_pred HHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccC--ChhHHHHHHhcCCeEEECccchh
Q 011766 243 MAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV--NHTEIGLLSRAGVKVSHCPASAM 320 (478)
Q Consensus 243 ~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~--~~~~~~~~~~~~~~~~~~p~~~~ 320 (478)
.|++.|+++++|+.+...... ....+...+. ..+.|+.++ ++++++++++.|+.+++||.+|+
T Consensus 180 ~A~~~g~~i~~Ha~E~~~~~~-----------~~~~~~~~g~----~ri~Hg~~l~~~~~~i~~l~~~gi~v~~cP~Sn~ 244 (324)
T TIGR01430 180 IARELGLHLTVHAGELGGPES-----------VREALDDLGA----TRIGHGVRALEDPELLKRLAQENITLEVCPTSNV 244 (324)
T ss_pred HHHHCCCCeEEecCCCCChHH-----------HHHHHHHcCc----hhcchhhhhccCHHHHHHHHHcCceEEECCcccc
Confidence 999999999999997632111 1112222222 247999999 67799999999999999999998
Q ss_pred hcc-----CCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHH
Q 011766 321 RML-----GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAK 395 (478)
Q Consensus 321 ~~~-----~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~ 395 (478)
... ...|+++|+++|++|++|||.+...+ .++..++..+... .+++++| ++++|.|+++
T Consensus 245 ~l~~~~~~~~~pi~~l~~~Gv~v~igTD~~~~~~-~~l~~e~~~a~~~--------------~~l~~~e-l~~~~~na~~ 308 (324)
T TIGR01430 245 ALGVVKSLAEHPLRRFLEAGVKVTLNSDDPAYFG-SYLTEEYEIAAKH--------------AGLTEEE-LKQLARNALE 308 (324)
T ss_pred cccccCCcccChHHHHHHCCCEEEECCCCCcccC-CCHHHHHHHHHHH--------------cCCCHHH-HHHHHHHHHH
Confidence 663 37899999999999999999876543 3888888877643 2599999 8899999999
Q ss_pred HcCCC
Q 011766 396 SVLWD 400 (478)
Q Consensus 396 ~lgl~ 400 (478)
.+.++
T Consensus 309 ~~f~~ 313 (324)
T TIGR01430 309 GSFLS 313 (324)
T ss_pred HhCCC
Confidence 98774
|
This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase. |
| >cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.3e-14 Score=132.64 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCC--------hhhhhhhccCCCCeeEEEEc
Q 011766 378 AALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHD--------RITSLVYCMRTENVVSVMCN 449 (478)
Q Consensus 378 ~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d--------~~~~~~~~~~~~~v~~v~v~ 449 (478)
+++++.++++++|.|||+++|+.+. .+||+|+|++..+..+.++ |+... .-..+|.+||++
T Consensus 259 ~~i~l~~l~~~~s~nPAk~~gl~~~--------~~~lvi~d~~~~~~v~~~~~~s~~~~sp~~G~---~l~G~v~~ti~r 327 (344)
T cd01316 259 GRLTIEDIVDRLHTNPKRIFNLPPQ--------SDTYVEVDLDEEWTIPKNPLQSKKGWTPFEGK---KVKGKVQRVVLR 327 (344)
T ss_pred CCCCHHHHHHHHHHhHHHHhCCCCC--------CCCEEEEeCCCcEEEChhhccccCCCCCCCCC---EEeeEEEEEEEC
Confidence 3599999999999999999999542 3479999987433222222 33221 123589999999
Q ss_pred cEEEEECCeeec
Q 011766 450 GQWVMKNKKILL 461 (478)
Q Consensus 450 G~~v~~~g~~~~ 461 (478)
|++||++|+++.
T Consensus 328 G~~v~~~g~~~~ 339 (344)
T cd01316 328 GETAFIDGEIVA 339 (344)
T ss_pred CEEEEECCEEcc
Confidence 999999998753
|
Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate. |
| >PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-14 Score=102.19 Aligned_cols=44 Identities=27% Similarity=0.663 Sum_probs=34.2
Q ss_pred EEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccc
Q 011766 43 VFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTS 90 (478)
Q Consensus 43 v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~ 90 (478)
|+|+||||++|++.... +..+.++||++|++|+|||||+|+|+.
T Consensus 1 V~I~~g~I~~v~~~~~~----~~~~~~viD~~g~~v~PG~ID~H~H~~ 44 (68)
T PF13594_consen 1 VLIEDGKIVAVGPDSEL----PADAAEVIDAKGKYVMPGFIDMHTHLG 44 (68)
T ss_dssp EEEETTEEEEEESSCCT----TSTCCEEEEETTCEEEE-EEEEEE-TT
T ss_pred CEEECCEEEEeCCCCCC----CCCCCEEEECCCCEEeCCeEeeeeccc
Confidence 78999999999654432 224567999999999999999999973
|
... |
| >cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-10 Score=111.12 Aligned_cols=161 Identities=11% Similarity=0.037 Sum_probs=94.5
Q ss_pred CHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCch-HHHHhhhC-CCCCCeeeeeeccCChhHHHHHHhc--
Q 011766 233 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGT-VTFLDKIE-FLQNNLLSAHTVWVNHTEIGLLSRA-- 308 (478)
Q Consensus 233 ~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~-~~~~~~~i~h~~~~~~~~~~~~~~~-- 308 (478)
+.+.+.++++.+.+.|+++.+|+............. ... ........ ..+.+.++.|.. +.+.++.+++.
T Consensus 111 d~~~l~~~~e~~~~~g~~V~vHaE~~~l~~~~~~~e----~~~~~~~~~lA~~~p~~~v~i~Hvs--t~~~~~~i~~ak~ 184 (335)
T cd01294 111 DLEKIYPVLEAMQKLGMPLLVHGEVPDFKIDVLDRE----AKFIPVLEPLAQRFPKLKIVLEHIT--TADAVEYVKSCNE 184 (335)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCCCcccccchhhH----HHHHHHHHHHHHHcCCCeEEEeccc--HHHHHHHHHhCCC
Confidence 356788899999999999999997643210000000 001 11112222 234567777776 45666666544
Q ss_pred CCeEEECccchhhc-------------cCCCcHH---------HHHHCCCcE-EEcCCCCCCCCCc----------CHHH
Q 011766 309 GVKVSHCPASAMRM-------------LGFAPIK---------EMLHADICV-SLGTDGAPSNNRM----------SIVD 355 (478)
Q Consensus 309 ~~~~~~~p~~~~~~-------------~~~~~~~---------~~~~~gv~v-~~gsD~~~~~~~~----------~~~~ 355 (478)
++.+.+||.+.... .-.+|+| +.+..|... +++|||.|+.... ..++
T Consensus 185 ~vt~Et~ph~L~l~~~~~~~~~~g~~~k~~PPlR~~~d~~~L~~~l~~G~id~~i~SDHaP~~~~~K~~~~g~~Gi~~~~ 264 (335)
T cd01294 185 NVAATITPHHLLLTRDDLLGGGLNPHLYCKPVAKRPEDREALRKAATSGHPKFFLGSDSAPHPKSNKESSCGCAGIFSAP 264 (335)
T ss_pred CcEEEEchhHheeeHHHhcCCCCCCCeEEcCCCCCHHHHHHHHHHHHcCCCCeEEECCCCCCCCccccCCCCCccccCHH
Confidence 58888998753211 1123333 566789888 5999998763211 1111
Q ss_pred HHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCc
Q 011766 356 EMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGK 410 (478)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~ 410 (478)
.+-. .+... . .+++|++++++.++.|||+++|+.+++|+|.+|.
T Consensus 265 ~~l~-~~~~~---------~-~~~l~l~~~v~~~s~nPA~i~gl~~~kg~i~~~~ 308 (335)
T cd01294 265 IALP-YLAEV---------F-EEHNALDKLEAFASDNGPNFYGLPPNKKTITLVK 308 (335)
T ss_pred HHHH-HHHHH---------H-hccCCHHHHHHHHHhHHHHHhCCCCCCCeEEEEe
Confidence 1111 11110 0 1259999999999999999999977666666664
|
In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric. |
| >cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-07 Score=88.88 Aligned_cols=237 Identities=10% Similarity=0.027 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCcc----CHHHHHHHHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccc
Q 011766 123 SYISTLLCGIELIHSGVTCFAEAGGQ----HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISF 198 (478)
Q Consensus 123 ~~~~~~~~~~~~l~~GvTtv~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (478)
.+......+.+++++|+|++++.+.. ......+..+..|++.+......... ..+.+. ......
T Consensus 30 ~~~~~~~~~~~~~~~Gvttiv~~~~~~~~~~~~~~~~~~~~~g~~v~~~~G~hp~~--~~~~~~---~~~~~~------- 97 (293)
T cd00530 30 DVEAAKEELKRFRAHGGRTIVDATPPGIGRDVEKLAEVARATGVNIVAATGFYKDA--FYPEWV---RLRSVE------- 97 (293)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEcCCcccCcCHHHHHHHHHHhCCcEEEecccCCCc--cChHHH---hhCCHH-------
Confidence 34556667788999999999998743 34455556666777765443322110 000000 000001
Q ss_pred cccchhHHHHHH-Hhc---CCCC---CCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCC
Q 011766 199 NFVSSSQKELYA-KHH---HAAD---GRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKV 271 (478)
Q Consensus 199 ~~~~~~~~~~~~-~~~---~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~ 271 (478)
...+.+. ... .... +.+.-+...........+.+++.+++|++.|++|++|+.+......
T Consensus 98 -----~l~~~~~~~l~~~~~~~~i~~~~IGEigld~~~~~~q~~~f~~~~~lA~~~~~Pv~iH~~~~~~~~~-------- 164 (293)
T cd00530 98 -----ELTDMLIREIEEGIEGTGIKAGIIKEAGGSPAITPLEEKVLRAAARAQKETGVPISTHTQAGLTMGL-------- 164 (293)
T ss_pred -----HHHHHHHHHHHhccccCCcCceEEEEeecCCCCCHHHHHHHHHHHHHHHHHCCeEEEcCCCCccccH--------
Confidence 2222111 111 1100 1121111111122233456788899999999999999875311110
Q ss_pred CCchHHHHhhhCCCCCCeeeeeec-cCChhHHHHHHhcCCeEEECccchhh---c----cCCCcHHHHHHCCC--cEEEc
Q 011766 272 DHGTVTFLDKIEFLQNNLLSAHTV-WVNHTEIGLLSRAGVKVSHCPASAMR---M----LGFAPIKEMLHADI--CVSLG 341 (478)
Q Consensus 272 ~~~~~~~l~~~~~~~~~~~i~h~~-~~~~~~~~~~~~~~~~~~~~p~~~~~---~----~~~~~~~~~~~~gv--~v~~g 341 (478)
.....+...+....+.++.|+. .-+.+.+..+.+.|..+.++...... . .....++++++.+. .+.++
T Consensus 165 --~~l~~l~~~g~~~~~~vi~H~~~~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~ill~ 242 (293)
T cd00530 165 --EQLRILEEEGVDPSKVVIGHLDRNDDPDYLLKIAALGAYLEFDGIGKDKIFGYPSDETRADAVKALIDEGYGDRLLLS 242 (293)
T ss_pred --HHHHHHHHcCCChhheEEeCCCCCCCHHHHHHHHhCCCEEEeCCCCcccccCCCCHHHHHHHHHHHHHCCCcCCEEEe
Confidence 1334555555555567899998 45678899999999988877533211 0 12334677888886 77999
Q ss_pred CCCCCCCCC------cCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHc
Q 011766 342 TDGAPSNNR------MSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSV 397 (478)
Q Consensus 342 sD~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~l 397 (478)
||.+..... ..+..-+....... ...+++.+++.+..+.||+++|
T Consensus 243 TD~p~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~g~~~e~i~~~~~~N~~~lf 293 (293)
T cd00530 243 HDVFRKSYLEKRYGGHGYDYILTRFIPRL-----------RERGVTEEQLDTILVENPARFL 293 (293)
T ss_pred CCcCchhhhhhccCCCChHHHHHHHHHHH-----------HHcCCCHHHHHHHHHHCHHHhC
Confidence 998542110 00110011111110 1236999999999999999875
|
PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active. |
| >cd00443 ADA_AMPD Adenosine/AMP deaminase | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-07 Score=88.79 Aligned_cols=144 Identities=20% Similarity=0.228 Sum_probs=105.4
Q ss_pred EeccccccC---CHHHHHHHHHHHHHcC-CceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCCh
Q 011766 224 FGIRQIMNA---TDRLLLETRDMAREFK-TGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH 299 (478)
Q Consensus 224 ~~~~~~~~~---~~~~l~~~~~~a~~~~-~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~ 299 (478)
++..+.+.. +.......++.+++.| +++.+|+.+..... ...+....+ ...|+|+..+.+
T Consensus 139 ~Dl~g~E~~~~~~~~~f~~~~~~ar~~g~l~~t~HaGE~~~~~--------------~v~~~~~~~--~~RIgHg~~~~~ 202 (305)
T cd00443 139 IDLVGDESKGENPLRDFYSYYEYARRLGLLGLTLHCGETGNRE--------------ELLQALLLL--PDRIGHGIFLLK 202 (305)
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHcCCcceEEeecCCCChH--------------HHHHHHHhc--cceeeceEecCC
Confidence 444444433 4677888899999999 99999999863321 111222222 346899999977
Q ss_pred --hHHHHHHhcCCeEEECccchhhccC-----CCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccC
Q 011766 300 --TEIGLLSRAGVKVSHCPASAMRMLG-----FAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFAN 372 (478)
Q Consensus 300 --~~~~~~~~~~~~~~~~p~~~~~~~~-----~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (478)
+.++++++.++.+.+||.+|..... ..|++.+++.|++++++||.+...++ ++..+++.+....
T Consensus 203 ~p~~~~~l~~~~i~ie~CP~SN~~~~~~~~~~~hP~~~~~~~G~~v~i~TDd~~~~~~-~l~~E~~~~~~~~-------- 273 (305)
T cd00443 203 HPELIYLVKLRNIPIEVCPTSNVVLGTVQSYEKHPFMRFFKAGLPVSLSTDDPGIFGT-SLSEEYSLAAKTF-------- 273 (305)
T ss_pred CHHHHHHHHHcCCEEEECcchhhhhcCCCChhhChHHHHHHCCCeEEEeCCCCcccCC-ChHHHHHHHHHHc--------
Confidence 9999999999999999999987733 37899999999999999999765443 7888887766432
Q ss_pred CCCCCCCCCHHHHHHHHhHHHHHHcCC
Q 011766 373 GTTDPAALPAETVLRMATINGAKSVLW 399 (478)
Q Consensus 373 ~~~~~~~ls~~~al~~~T~~pA~~lgl 399 (478)
+++.++..+++ .|+-+...+
T Consensus 274 ------~l~~~~l~~l~-~nsi~~sf~ 293 (305)
T cd00443 274 ------GLTFEDLCELN-RNSVLSSFA 293 (305)
T ss_pred ------CcCHHHHHHHH-HHHHHHhcC
Confidence 48888876654 566555544
|
Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway. |
| >PRK05451 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.8e-07 Score=85.07 Aligned_cols=161 Identities=12% Similarity=0.110 Sum_probs=95.7
Q ss_pred CHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchH-HHHh-hh-CCCCCCeeeeeeccCChhHHHHHHh--
Q 011766 233 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTV-TFLD-KI-EFLQNNLLSAHTVWVNHTEIGLLSR-- 307 (478)
Q Consensus 233 ~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~-~~l~-~~-~~~~~~~~i~h~~~~~~~~~~~~~~-- 307 (478)
+.+.+.++++.+.+.|+++.+|+............ ..... ..+. .. ...+.+..+.|.. +.+.++.+++
T Consensus 116 dd~~l~~~~e~~~~~g~~V~vHaE~~~~~~~~~~~----e~~~~~~~l~~lA~~~pg~~lhI~Hls--t~~~~e~i~~a~ 189 (345)
T PRK05451 116 DIEKIYPVLEAMQKLGMPLLVHGEVTDPDIDIFDR----EAVFIDRVLEPLRRRFPKLKIVFEHIT--TKDAVDYVREAN 189 (345)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCcccccccc----hHHHHHHHHHHHHHhcCCCcEEEEecC--cHHHHHHHHhcC
Confidence 56788889999999999999998753221000000 00001 1111 11 2225567777876 4566666554
Q ss_pred cCCeEEECccchhhc-------------cCCCcHH---------HHHHCCCcE-EEcCCCCCCCC--------CcCHHHH
Q 011766 308 AGVKVSHCPASAMRM-------------LGFAPIK---------EMLHADICV-SLGTDGAPSNN--------RMSIVDE 356 (478)
Q Consensus 308 ~~~~~~~~p~~~~~~-------------~~~~~~~---------~~~~~gv~v-~~gsD~~~~~~--------~~~~~~~ 356 (478)
.++.+.+||...... .-.+|+| +.+..|... +++|||.|+.. ...++..
T Consensus 190 ~~it~Et~ph~L~l~~~~~~~~~~~~~~k~~PPLR~~~d~~aLw~~l~~G~Id~~i~SDHaP~~~~~K~~~~G~~gi~~~ 269 (345)
T PRK05451 190 DNLAATITPHHLLINRNDMLVGGIRPHLYCLPILKRETHRQALREAATSGNPKFFLGTDSAPHARHAKESACGCAGIFSA 269 (345)
T ss_pred CCEEEEecHHHHhcCHHHHhCCCcCCCeEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChHHhCCCCCCCchhhH
Confidence 356678898753211 0123333 667889888 89999988631 0122221
Q ss_pred H-HHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccC
Q 011766 357 M-YLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAG 409 (478)
Q Consensus 357 ~-~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G 409 (478)
. ....+... ... +.++++++++++.|||+++|+.+++|+|.+|
T Consensus 270 ~~g~~~~~~~---------~~~-~~~l~~~v~~~s~nPAkifGl~~~KG~i~~~ 313 (345)
T PRK05451 270 PAALELYAEV---------FEE-AGALDKLEAFASLNGPDFYGLPRNTDTITLV 313 (345)
T ss_pred HHHHHHHHHH---------HHc-CCCHHHHHHHHhHHHHHHhCCCCCCCeEEEE
Confidence 1 00111100 011 2389999999999999999999899999888
|
|
| >TIGR00010 hydrolase, TatD family | Back alignment and domain information |
|---|
Probab=98.73 E-value=4e-06 Score=76.60 Aligned_cols=137 Identities=11% Similarity=0.058 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEE
Q 011766 235 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 314 (478)
Q Consensus 235 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~ 314 (478)
+.+...+++|.+.|++|.+|+...... ..+.+...+ .....+.|+..-+.+.+..+.+.|+.+.+
T Consensus 108 ~~~~~~~~~a~~~~~pv~iH~~~~~~~-------------~~~~l~~~~--~~~~~i~H~~~~~~~~~~~~~~~g~~~~~ 172 (252)
T TIGR00010 108 EVFRAQLQLAEELNLPVIIHARDAEED-------------VLDILREEK--PKVGGVLHCFTGDAELAKKLLDLGFYISI 172 (252)
T ss_pred HHHHHHHHHHHHhCCCeEEEecCccHH-------------HHHHHHhcC--CCCCEEEEccCCCHHHHHHHHHCCCeEee
Confidence 678888899999999999999753321 223333333 23356779876667888888888999888
Q ss_pred CccchhhccCCCcHHHHHHCC--CcEEEcCCCCCCC-----CCcCHHHHHHH-HHHHhcccccccCCCCCCCCCCHHHHH
Q 011766 315 CPASAMRMLGFAPIKEMLHAD--ICVSLGTDGAPSN-----NRMSIVDEMYL-ASLINKGREVFANGTTDPAALPAETVL 386 (478)
Q Consensus 315 ~p~~~~~~~~~~~~~~~~~~g--v~v~~gsD~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ls~~~al 386 (478)
...... .....++++++.. -++.++||.+... ...+....+.. ...... ..|+|.+++.
T Consensus 173 ~~~~~~--~~~~~~~~~i~~~~~dril~~TD~p~~~~~~~~~~~~~p~~i~~~~~~~a~-----------~~g~~~~~~~ 239 (252)
T TIGR00010 173 SGIVTF--KNAKSLREVVRKIPLERLLVETDSPYLAPVPYRGKRNEPAFVRYTVEAIAE-----------IKGMDVEELA 239 (252)
T ss_pred ceeEec--CCcHHHHHHHHhCCHHHeEecccCCCCCCCCCCCCCCCChhHHHHHHHHHH-----------HhCcCHHHHH
Confidence 764321 1123355666554 4799999985321 00011011111 111110 1269999999
Q ss_pred HHHhHHHHHHcCC
Q 011766 387 RMATINGAKSVLW 399 (478)
Q Consensus 387 ~~~T~~pA~~lgl 399 (478)
++++.||++++++
T Consensus 240 ~~~~~N~~~~~~~ 252 (252)
T TIGR00010 240 QITTKNAKRLFGL 252 (252)
T ss_pred HHHHHHHHHHhCc
Confidence 9999999999975
|
Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity. |
| >TIGR00856 pyrC_dimer dihydroorotase, homodimeric type | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.9e-06 Score=80.41 Aligned_cols=162 Identities=13% Similarity=0.113 Sum_probs=93.3
Q ss_pred CHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchH-HHHhh--hCCCCCCeeeeeeccCChhHHHHHHhc-
Q 011766 233 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTV-TFLDK--IEFLQNNLLSAHTVWVNHTEIGLLSRA- 308 (478)
Q Consensus 233 ~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~-~~l~~--~~~~~~~~~i~h~~~~~~~~~~~~~~~- 308 (478)
+...+.++++.+++.|+++.+|+............ ..... ..+.. ....+.+..+.|... .+.++.+++.
T Consensus 113 dd~~l~~~~e~~~e~g~~v~vHaEd~~~~i~~~~~----e~~a~~~~i~~lA~~~~~~~~~i~H~st--~~~~~~i~~a~ 186 (341)
T TIGR00856 113 DIDAIMPVLEAMEKIGLPLLLHGEVTHGDIDIFDR----EARFIESVLEPLRQRFPALKVVLEHITT--KDAIDYVEDGN 186 (341)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeecCCCCCcccccc----hhhhhHHHHHHHHHHccCCeEEEEecCc--HHHHHHHHHcC
Confidence 34678889999999999999999764211100000 00001 11111 122345566667653 4445444432
Q ss_pred -CCeEEECccchhhc-----c--------CCCcHH---------HHHHCCCcE-EEcCCCCCCCCCc---------CHHH
Q 011766 309 -GVKVSHCPASAMRM-----L--------GFAPIK---------EMLHADICV-SLGTDGAPSNNRM---------SIVD 355 (478)
Q Consensus 309 -~~~~~~~p~~~~~~-----~--------~~~~~~---------~~~~~gv~v-~~gsD~~~~~~~~---------~~~~ 355 (478)
.+...+||.+.... . -.+|+| +.+..|... +++|||.|+.... -+.-
T Consensus 187 ~~vt~E~~ph~L~l~~~~~~~~~~~~~~k~~PPlR~~~d~~aL~~~l~~G~id~~i~SDHaP~~~~~K~~~~~~~G~~g~ 266 (341)
T TIGR00856 187 NRLAATITPQHLMFTRNDLLGGGVNPHLYCLPILKRNIHQQALLELAASGFPKFFLGTDSAPHARHRKESSCGCAGCFSA 266 (341)
T ss_pred CCEEEEEcHHHHhccHHHHhccCCCCceEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChhHcCCCCCCCCcccH
Confidence 36778888753211 1 123333 667789888 6999998773110 0001
Q ss_pred HHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEc
Q 011766 356 EMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVD 418 (478)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d 418 (478)
+.....+.. .. ..++|+++++++.|.|||+++|+ ++ | +|||+|++
T Consensus 267 e~~l~~~~~---------~~-~~~~~l~~~v~~~s~nPAk~~gl-~~-~------dAdi~~~~ 311 (341)
T TIGR00856 267 PTALPSYAE---------VF-EEMNALENLEAFCSDNGPQFYGL-PV-N------STKIELVK 311 (341)
T ss_pred HHHHHHHHH---------HH-hcCCCHHHHHHHHhHhHHHHhCC-CC-C------CceEEEEe
Confidence 111111110 01 12589999999999999999999 43 4 89999995
|
This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes. |
| >PRK09875 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.8e-06 Score=75.37 Aligned_cols=239 Identities=12% Similarity=0.015 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHhcCcceeecCC----ccCHHHHHHHHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccc
Q 011766 125 ISTLLCGIELIHSGVTCFAEAG----GQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNF 200 (478)
Q Consensus 125 ~~~~~~~~~~l~~GvTtv~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (478)
.....-..++.+.|..|++|.. +..+..+.+..+..|++...+..++.... .|..... .+.+ .
T Consensus 34 ~~~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~tgv~Iv~~TG~y~~~~-~p~~~~~-~~~e-----------~ 100 (292)
T PRK09875 34 AFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQDAF-FPEHVAT-RSVQ-----------E 100 (292)
T ss_pred HHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHhCCcEEEcCcCCCCcc-CCHHHhc-CCHH-----------H
Confidence 3444455667888999999853 34567778888899999977655553321 2222111 1111 1
Q ss_pred cchhHHHHHHHhcCC---CCCCe-EEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchH
Q 011766 201 VSSSQKELYAKHHHA---ADGRI-RIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTV 276 (478)
Q Consensus 201 ~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 276 (478)
+.....+.+...... ..+.+ ++............+.+++..+.+++.|+++++|........+ .+
T Consensus 101 la~~~i~ei~~Gi~gt~ikaGvIGeiG~~~~~it~~E~kvl~Aaa~a~~~TG~pi~~Ht~~~~~g~e-----------~l 169 (292)
T PRK09875 101 LAQEMVDEIEQGIDGTELKAGIIAEIGSSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFSTMGLE-----------QL 169 (292)
T ss_pred HHHHHHHHHHHhhccCCCcccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCcEEEcCCCccchHH-----------HH
Confidence 111233333333221 11223 2111111122223345777778888999999999755322111 34
Q ss_pred HHHhhhCCCCCCeeeeeeccC-ChhHHHHHHhcCCeEEECccc-hh-hc--cCCCcHHHHHHCC--CcEEEcCCCCCCCC
Q 011766 277 TFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAGVKVSHCPAS-AM-RM--LGFAPIKEMLHAD--ICVSLGTDGAPSNN 349 (478)
Q Consensus 277 ~~l~~~~~~~~~~~i~h~~~~-~~~~~~~~~~~~~~~~~~p~~-~~-~~--~~~~~~~~~~~~g--v~v~~gsD~~~~~~ 349 (478)
+.+.+.+.-..++++.|.... +.+.+..+++.|+.+.+.... .. .. .....++.+.++| -++.+++|......
T Consensus 170 ~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~~g~~~~~pd~~r~~~i~~L~~~Gy~drilLS~D~~~~~~ 249 (292)
T PRK09875 170 ALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDITRRSH 249 (292)
T ss_pred HHHHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCEEEeccCCCcccCCHHHHHHHHHHHHhcCCCCeEEEeCCCCCccc
Confidence 567777777788999998754 567888999999998874211 10 00 1245567788887 57889999743311
Q ss_pred -----CcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcC
Q 011766 350 -----RMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVL 398 (478)
Q Consensus 350 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lg 398 (478)
...+..-+...... +.+.|+|.+++=++...||+++|+
T Consensus 250 ~~~~gg~G~~~i~~~~ip~-----------L~~~Gvse~~I~~m~~~NP~r~~~ 292 (292)
T PRK09875 250 LKANGGYGYDYLLTTFIPQ-----------LRQSGFSQADVDVMLRENPSQFFQ 292 (292)
T ss_pred ccccCCCChhHHHHHHHHH-----------HHHcCCCHHHHHHHHHHCHHHHhC
Confidence 00011111111110 112379999999999999999874
|
|
| >cd01310 TatD_DNAse TatD like proteins; E | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-05 Score=73.52 Aligned_cols=135 Identities=13% Similarity=0.079 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEE
Q 011766 234 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVS 313 (478)
Q Consensus 234 ~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~ 313 (478)
.+.+...+++|.+.++++.+|+...... ..+.+...+ ....++.|+..-+.+.+..+.+.|+.+.
T Consensus 107 ~~~~~~~~~~a~e~~~pv~iH~~~~~~~-------------~~~l~~~~~--~~~~~i~H~~~~~~~~~~~~~~~g~~~~ 171 (251)
T cd01310 107 KEVFRAQLELAKELNLPVVIHSRDAHED-------------VLEILKEYG--PPKRGVFHCFSGSAEEAKELLDLGFYIS 171 (251)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeeCchHH-------------HHHHHHhcC--CCCCEEEEccCCCHHHHHHHHHcCCEEE
Confidence 4568888999999999999998754221 223344433 2345667877656678888888999988
Q ss_pred ECccchhhccCCCcHHHHHHCC--CcEEEcCCCCCCCCC------cCH--HHHHHHHHHHhcccccccCCCCCCCCCCHH
Q 011766 314 HCPASAMRMLGFAPIKEMLHAD--ICVSLGTDGAPSNNR------MSI--VDEMYLASLINKGREVFANGTTDPAALPAE 383 (478)
Q Consensus 314 ~~p~~~~~~~~~~~~~~~~~~g--v~v~~gsD~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~ 383 (478)
+.+..... ...-++.+++.+ -++.++||++..... ..+ ...+...... ..+++.+
T Consensus 172 ~~~~~~~~--~~~~~~~~~~~~~~dril~~TD~p~~~~~~~~~~~~~~~~~~~~~~~la~-------------~~gl~~e 236 (251)
T cd01310 172 ISGIVTFK--NANELREVVKEIPLERLLLETDSPYLAPVPFRGKRNEPAYVKHVAEKIAE-------------LKGISVE 236 (251)
T ss_pred eeeeeccC--CCHHHHHHHHhCChHHEEEcccCCCCCCCCCCCCCCCChhHHHHHHHHHH-------------HHCcCHH
Confidence 88754211 111255666554 478999998543110 011 1111111100 1269999
Q ss_pred HHHHHHhHHHHHHcC
Q 011766 384 TVLRMATINGAKSVL 398 (478)
Q Consensus 384 ~al~~~T~~pA~~lg 398 (478)
++.+..+.||+++||
T Consensus 237 ~~~~~~~~N~~~ll~ 251 (251)
T cd01310 237 EVAEVTTENAKRLFG 251 (251)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999985
|
coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity. |
| >PTZ00124 adenosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.5e-06 Score=79.84 Aligned_cols=147 Identities=14% Similarity=0.159 Sum_probs=100.6
Q ss_pred EeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccC--ChhH
Q 011766 224 FGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV--NHTE 301 (478)
Q Consensus 224 ~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~--~~~~ 301 (478)
++..+.+.. ......+++.|++.|+++.+|+.+....... ......+...+. ..|+||..+ +++.
T Consensus 196 iDLaG~E~~-~~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~--------~~v~~ai~~l~~----~RIGHG~~~~~d~~l 262 (362)
T PTZ00124 196 FDHAGHEVD-LKPFKDIFDYVREAGVNLTVHAGEDVTLPNL--------NTLYSAIQVLKV----KRIGHGIRVAESQEL 262 (362)
T ss_pred EeccCCCCC-cHHHHHHHHHHHHCCCCEEEEeCCCCCCCcc--------hhHHHHHHHhCC----CccccccccCCCHHH
Confidence 444444432 2446778899999999999999974210000 001122222222 348999998 5889
Q ss_pred HHHHHhcCCeEEECccchhhcc-----CCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCC
Q 011766 302 IGLLSRAGVKVSHCPASAMRML-----GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTD 376 (478)
Q Consensus 302 ~~~~~~~~~~~~~~p~~~~~~~-----~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (478)
++++++.++.+.+||.+|.... ...|++.++++|++++++||.+... ..++..++..+...
T Consensus 263 ~~~l~~~~I~lEvCPtSN~~~~~v~~~~~HPi~~l~~~Gv~v~InTDDp~~~-~t~l~~Ey~~~~~~------------- 328 (362)
T PTZ00124 263 IDMVKEKDILLEVCPISNVLLNNAKSMDTHPIRKLYDAGVKVSVNSDDPGMF-LTNINDDYEELYTH------------- 328 (362)
T ss_pred HHHHHHcCCeEEECCcchhhhhcCCchhhHHHHHHHHCCCcEEEeCCCcccc-CCChhHHHHHHHHH-------------
Confidence 9999999999999999998663 3468999999999999999987553 34566666554432
Q ss_pred CCCCCHHHHHHHHhHHHHHHcCC
Q 011766 377 PAALPAETVLRMATINGAKSVLW 399 (478)
Q Consensus 377 ~~~ls~~~al~~~T~~pA~~lgl 399 (478)
.+++.++..++ +.|+.+...+
T Consensus 329 -~gls~~~l~~l-~~nai~asF~ 349 (362)
T PTZ00124 329 -LNFTLADFMKM-NEWALEKSFL 349 (362)
T ss_pred -cCCCHHHHHHH-HHHHHHHhcC
Confidence 26899888876 5566655544
|
|
| >PLN02599 dihydroorotase | Back alignment and domain information |
|---|
Probab=98.48 E-value=6e-06 Score=78.44 Aligned_cols=156 Identities=14% Similarity=0.119 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchH-HHH--hhhCCCCCCeeeeeeccCChhHHHHHHh--c
Q 011766 234 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTV-TFL--DKIEFLQNNLLSAHTVWVNHTEIGLLSR--A 308 (478)
Q Consensus 234 ~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~-~~l--~~~~~~~~~~~i~h~~~~~~~~~~~~~~--~ 308 (478)
.+.+.++++.+.+.|+++.+|+............ ....+ ..+ ......+.+..+.|.+. .+.++.+++ .
T Consensus 135 ~~~l~~~le~~~e~G~~L~vH~E~~~~~~~~~~~----E~~~i~r~l~~~la~~~g~kI~i~HiSt--~~~ve~v~~ak~ 208 (364)
T PLN02599 135 LGKCLPVLEEMAEQGMPLLVHGEVTDPSVDIFDR----EKVFIDTILAPLVQKLPQLKIVMEHITT--MDAVEFVESCGD 208 (364)
T ss_pred HHHHHHHHHHHHhcCCEEEEecCCCccccccccc----HHHHHHHHHHHHHHhccCCeEEEEecCh--HHHHHHHHhccC
Confidence 4788888999999999999999763321100000 00011 122 12233455666777653 444444433 2
Q ss_pred -CCeEEECccchhhc------cC-------CCc---------HHHHHHCCCc-EEEcCCCCCCCCCc--------CHHHH
Q 011766 309 -GVKVSHCPASAMRM------LG-------FAP---------IKEMLHADIC-VSLGTDGAPSNNRM--------SIVDE 356 (478)
Q Consensus 309 -~~~~~~~p~~~~~~------~~-------~~~---------~~~~~~~gv~-v~~gsD~~~~~~~~--------~~~~~ 356 (478)
++...+||.+.... .+ .+| +.+.+..|.. .+++|||.|+.... ..+..
T Consensus 209 ~~vtae~tpHhL~l~~~~~~~~~~~~~~k~~PPlR~~~dr~aL~~al~~G~i~~~i~SDHaPh~~~~K~~~~g~~Gi~~~ 288 (364)
T PLN02599 209 GNVAATVTPQHLLLNRNALFQGGLQPHNYCLPVLKREIHREALVKAATSGSKKFFLGTDSAPHPKRAKEASCGCAGIYSA 288 (364)
T ss_pred CCEEEEecHHHHhcCHHHHhccCCCCCeEEECCCCCHHHHHHHHHHHHcCCCCEEEecCCCCCChHHhcCCCCCCCcccH
Confidence 57788998853211 01 123 3366778884 89999998763110 11110
Q ss_pred -HHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccc
Q 011766 357 -MYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGS 405 (478)
Q Consensus 357 -~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~ 405 (478)
.....+.. ...+.+ +++++++.+|.|||+++|+..++|+
T Consensus 289 ~~~l~~l~~---------~~~~~g-~l~~l~~~~S~npA~~~gL~~~kg~ 328 (364)
T PLN02599 289 PVALSLYAK---------AFEEAG-ALDKLEAFTSFNGPDFYGLPRNTST 328 (364)
T ss_pred HHHHHHHHH---------HHHhcC-CHHHHHHHHhHHHHHHhCCCCCCCe
Confidence 00111100 001124 8999999999999999999435564
|
|
| >cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.3e-06 Score=78.50 Aligned_cols=154 Identities=14% Similarity=0.089 Sum_probs=102.5
Q ss_pred Eeccccc--cCCHHHHHHHHHHHHHcC--CceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCC-
Q 011766 224 FGIRQIM--NATDRLLLETRDMAREFK--TGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN- 298 (478)
Q Consensus 224 ~~~~~~~--~~~~~~l~~~~~~a~~~~--~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~- 298 (478)
++..+.+ ..+.+....+++.|++.| +++.+|+.+........ .....+.+ ..+. ..|+||..+.
T Consensus 166 idL~G~E~~~~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~------~~~v~~al-~lg~----~RIGHG~~~~~ 234 (345)
T cd01321 166 FDLVGQEDAGRPLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTET------DENLVDAL-LLNT----KRIGHGFALPK 234 (345)
T ss_pred EecCCCccCCCCHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCC------hhHHHHHH-HhCC----CcCccccccCc
Confidence 4444444 345677788899999999 99999999864200000 00011222 1222 3479999985
Q ss_pred -hhHHHHHHhcCCeEEECccchhhcc-----CCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccC
Q 011766 299 -HTEIGLLSRAGVKVSHCPASAMRML-----GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFAN 372 (478)
Q Consensus 299 -~~~~~~~~~~~~~~~~~p~~~~~~~-----~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (478)
++.++.+++.++.+.+||.+|.... ...|++.++++|++++++||.+...+..++..+.+.+.....
T Consensus 235 dp~ll~~l~~~~I~lEvCPtSN~~~~~v~~~~~HPl~~ll~~Gv~vtinTDDp~~f~t~~l~~Ey~~~~~~~g------- 307 (345)
T cd01321 235 HPLLMDLVKKKNIAIEVCPISNQVLGLVSDLRNHPAAALLARGVPVVISSDDPGFWGAKGLSHDFYQAFMGLA------- 307 (345)
T ss_pred CHHHHHHHHHcCCeEEECcchhhhhccccchhhChHHHHHHCCCeEEEeCCCcchhCCCCchHHHHHHHHHhc-------
Confidence 8899999999999999999998652 346899999999999999999765333256666555442210
Q ss_pred CCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 011766 373 GTTDPAALPAETVLRMATINGAKSVLWD 400 (478)
Q Consensus 373 ~~~~~~~ls~~~al~~~T~~pA~~lgl~ 400 (478)
..+++.++.. .++.|+.+...++
T Consensus 308 ----~~~l~~~~l~-~l~~nsi~~sF~~ 330 (345)
T cd01321 308 ----PADAGLRGLK-QLAENSIRYSALS 330 (345)
T ss_pred ----cCCCCHHHHH-HHHHHHHHHHCCC
Confidence 0128888765 4556777766553
|
|
| >COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=6e-06 Score=76.63 Aligned_cols=140 Identities=19% Similarity=0.260 Sum_probs=99.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccC--ChhHHHHHHh
Q 011766 230 MNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV--NHTEIGLLSR 307 (478)
Q Consensus 230 ~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~--~~~~~~~~~~ 307 (478)
....++....+.+.++++|+.+.+|+.+...... ....+...+.- .|.||..+ .++.+.++++
T Consensus 180 ~~~p~~~f~~~f~~~r~~gl~lt~HaGE~~~~~~-----------i~~al~~~~~~----rI~HGi~~~~d~~L~~~l~~ 244 (345)
T COG1816 180 SGYPPELFVSLFKLARDNGLKLTIHAGEAGGPES-----------IRDALDLLGAE----RIGHGIRAIEDPELLYRLAE 244 (345)
T ss_pred ccCCHHHHHHHHHHHHHcCceEEEeccccCCcHH-----------HHHHHHHhchh----hhccccccccCHHHHHHHHH
Confidence 3457788999999999999999999986443221 11222222221 47888875 4678889999
Q ss_pred cCCeEEECccchhhc-----cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCH
Q 011766 308 AGVKVSHCPASAMRM-----LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPA 382 (478)
Q Consensus 308 ~~~~~~~~p~~~~~~-----~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 382 (478)
.++.+.+||.+|... -...|+++++++|++|+++||.+...+ .++..+...+.... +++.
T Consensus 245 ~qI~levCP~SNi~~~~v~~~~~hPf~~~~d~Gv~VsLnTDdp~~f~-~~l~~Ey~~aa~~~--------------~l~~ 309 (345)
T COG1816 245 RQIPLEVCPLSNIQLGVVPSLAKHPFKKLFDAGVKVSLNTDDPLYFG-TPLIEEYLVAAQIY--------------GLSR 309 (345)
T ss_pred hCCeeEECCcchhhcccccchhhCcHHHHHHcCCceEEcCCChhhcC-CchHHHHHHHHHHh--------------CCCH
Confidence 999999999999654 235689999999999999999977643 25666665554331 4788
Q ss_pred HHHHHHHhHHHHHHcCCC
Q 011766 383 ETVLRMATINGAKSVLWD 400 (478)
Q Consensus 383 ~~al~~~T~~pA~~lgl~ 400 (478)
+|+-+ .+.|+=+.-+++
T Consensus 310 ~dl~~-~arnav~~af~~ 326 (345)
T COG1816 310 EDLCE-LARNAVEAAFIS 326 (345)
T ss_pred HHHHH-HHHHHHHHccCC
Confidence 87664 455665555553
|
|
| >PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3 | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.1e-05 Score=76.85 Aligned_cols=135 Identities=20% Similarity=0.222 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCC--hhHHHHHHhcCCeE
Q 011766 235 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN--HTEIGLLSRAGVKV 312 (478)
Q Consensus 235 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~--~~~~~~~~~~~~~~ 312 (478)
.....+++.+++.|+++.+|+.+....... .+.+.. ++. ..|+||..+. ++.++++++.++.+
T Consensus 180 ~~~~~~~~~a~~~gl~~t~HaGE~~~~~~~-----------~~ai~~---l~~-~RIgHG~~~~~~p~l~~~~~~~~I~i 244 (331)
T PF00962_consen 180 LKFAPAFRKAREAGLKLTVHAGETGGPEHI-----------RDAILL---LGA-DRIGHGVRLIKDPELLELLAERQIPI 244 (331)
T ss_dssp GGHHHHHHHHHHTT-EEEEEESSSSTHHHH-----------HHHHHT---ST--SEEEE-GGGGGSHHHHHHHHHTT-EE
T ss_pred HHHHHHHhhhcccceeecceecccCCcccc-----------cchhhh---ccc-eeecchhhhhhhhHHHHHHHHhCCCe
Confidence 347778889999999999999986643221 122222 222 3589999874 67789999999999
Q ss_pred EECccchhhcc-----CCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHH
Q 011766 313 SHCPASAMRML-----GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLR 387 (478)
Q Consensus 313 ~~~p~~~~~~~-----~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~ 387 (478)
.+||.+|.... ...|++.++++|++|+++||.+... ..++..+...+.... ++|.++..
T Consensus 245 EvcptSN~~~~~~~~~~~hP~~~~~~~gv~v~i~TDd~~~~-~~~l~~ey~~~~~~~--------------~l~~~~l~- 308 (331)
T PF00962_consen 245 EVCPTSNVQLGAVPSYEEHPLRKLLDAGVPVSINTDDPGVF-GTTLSDEYYLAAEAF--------------GLSLADLK- 308 (331)
T ss_dssp EE-HHHHHHTTSSSTGGG-CHHHHHHTT-EEEE--BSHHHH-T-SHHHHHHHHHHHH--------------T--HHHHH-
T ss_pred eeCCCcCcccceeeecchhHHHHHHHcCCceeccCCCcccc-CCCcHHHHHHHHHHc--------------CCCHHHHH-
Confidence 99999998762 2469999999999999999986432 234556655554332 48888755
Q ss_pred HHhHHHHHHcCCC
Q 011766 388 MATINGAKSVLWD 400 (478)
Q Consensus 388 ~~T~~pA~~lgl~ 400 (478)
.+..|+.+...++
T Consensus 309 ~l~~nsi~~sf~~ 321 (331)
T PF00962_consen 309 QLARNSIEASFLS 321 (331)
T ss_dssp HHHHHHHHCSSS-
T ss_pred HHHHHHHHHHcCC
Confidence 4555777766553
|
5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A .... |
| >PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3 | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.4e-05 Score=72.34 Aligned_cols=233 Identities=12% Similarity=0.092 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHhcCcceeecCC----ccCHHHHHHHHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCcccc
Q 011766 124 YISTLLCGIELIHSGVTCFAEAG----GQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFN 199 (478)
Q Consensus 124 ~~~~~~~~~~~l~~GvTtv~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (478)
........+.+...|..|++|+. +..+..+.+..+..|++...+..++.... .| .|....+.+
T Consensus 37 ~~~~~~El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~II~~TG~y~~~~-~p-~~~~~~s~e----------- 103 (308)
T PF02126_consen 37 VEAAVAELKEFKAAGGRTIVDATPIGLGRDVEALREISRRTGVNIIASTGFYKEPF-YP-EWVREASVE----------- 103 (308)
T ss_dssp HHHHHHHHHHHHHTTEEEEEE--SGGGTB-HHHHHHHHHHHT-EEEEEEEE-SGGC-SC-HHHHTSHHH-----------
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCcccCcCHHHHHHHHHHhCCeEEEeCCCCcccc-CC-hhhhcCCHH-----------
Confidence 34444556677889999999853 34567778888999999987766553221 12 111111111
Q ss_pred ccchhHH-HHHHHhcCC------CCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCCh-hhhHHHhhhcCC
Q 011766 200 FVSSSQK-ELYAKHHHA------ADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP-YENQVVMDTRKV 271 (478)
Q Consensus 200 ~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~-~~~~~~~~~~~~ 271 (478)
+.. .++++.... ..+.++.......+.......++++....++.|+++++|..... ...+
T Consensus 104 ----~la~~~i~Ei~~GidgT~ikaG~Ik~~~~~~~it~~E~k~lrAaa~A~~~TG~pI~~H~~~g~~~~~e-------- 171 (308)
T PF02126_consen 104 ----ELADLFIREIEEGIDGTGIKAGIIKEIGSSNPITPLEEKVLRAAARAHKETGAPISTHTGRGTRMGLE-------- 171 (308)
T ss_dssp ----HHHHHHHHHHHT-STTSSB-ESEEEEEEBTTBCEHHHHHHHHHHHHHHHHHT-EEEEEESTTGTCHHH--------
T ss_pred ----HHHHHHHHHHHhcCCCCccchhheeEeeccCCCCHHHHHHHHHHHHHHHHhCCeEEEcCCCCCcCHHH--------
Confidence 222 222332221 12345443333233333344677777888888999999997665 2211
Q ss_pred CCchHHHHhhhCCCCCCeeeeeeccCCh-hHHHHHHhcCCeEEECcc------chh------hc--cCCCcHHHHHHCCC
Q 011766 272 DHGTVTFLDKIEFLQNNLLSAHTVWVNH-TEIGLLSRAGVKVSHCPA------SAM------RM--LGFAPIKEMLHADI 336 (478)
Q Consensus 272 ~~~~~~~l~~~~~~~~~~~i~h~~~~~~-~~~~~~~~~~~~~~~~p~------~~~------~~--~~~~~~~~~~~~gv 336 (478)
.++++.+.+.-..+++++|.....+ +.+..+++.|+.+.+--. ... .. .....+..|+++|.
T Consensus 172 ---~~~il~e~Gv~~~rvvigH~D~~~D~~y~~~la~~G~~l~~D~~g~~~~g~~~~~~~~~~~d~~ri~~l~~L~~~Gy 248 (308)
T PF02126_consen 172 ---QLDILEEEGVDPSRVVIGHMDRNPDLDYHRELADRGVYLEFDTIGREFSGKDKNPRVGYPPDEERIELLKELIEEGY 248 (308)
T ss_dssp ---HHHHHHHTT--GGGEEETSGGGST-HHHHHHHHHTT-EEEETTTT-B-TTTTTCHSCTTS-HHHHHHHHHHHHHTTT
T ss_pred ---HHHHHHHcCCChhHeEEeCCCCCCCHHHHHHHHhcCCEEEecCCcccccCcccCccCCCCCHHHHHHHHHHHHHcCC
Confidence 3567788888888999999885433 466788889998876322 110 00 12345678889984
Q ss_pred --cEEEcCCCCC--CCC-------CcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHc
Q 011766 337 --CVSLGTDGAP--SNN-------RMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSV 397 (478)
Q Consensus 337 --~v~~gsD~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~l 397 (478)
.+.++.|... ... ...+.-.-....+. +.|+|.+++=++...||+++|
T Consensus 249 ~~qIlLS~D~~~k~~~~~~gg~g~~~~~i~~~fiP~L~-------------~~Gv~~~~i~~ilv~NP~r~l 307 (308)
T PF02126_consen 249 ADQILLSHDIGRKSRLYRYGGGGYGYIYILTRFIPRLK-------------ERGVSEEDIDKILVENPARIL 307 (308)
T ss_dssp GGGEEE-HHHESEEGSSSCCHHHHTTTHHHHTHHHHHH-------------HTTS-HHHHHHHHTHHHHHHH
T ss_pred cCcEEEeccccccccccccCCCCccHHHHHHHHHHHHH-------------HcCCCHHHHHHHHHHCHHHHc
Confidence 7999998543 000 01111011111111 237999999999999999986
|
1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A .... |
| >PRK10812 putative DNAse; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0011 Score=60.46 Aligned_cols=139 Identities=13% Similarity=0.062 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEE
Q 011766 235 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 314 (478)
Q Consensus 235 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~ 314 (478)
+.+++.+++|.++++++.+|.-..... ..+.+...+.... ..+.|+..-+.+.++++.+.|..+.+
T Consensus 111 ~vf~~ql~lA~e~~~Pv~iH~r~a~~~-------------~l~iL~~~~~~~~-~~v~H~fsG~~~~a~~~~~~G~~is~ 176 (265)
T PRK10812 111 ESFRHHIQIGRELNKPVIVHTRDARAD-------------TLAILREEKVTDC-GGVLHCFTEDRETAGKLLDLGFYISF 176 (265)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeCchHH-------------HHHHHHhhcCCCC-CEEEEeecCCHHHHHHHHHCCCEEEE
Confidence 457777899999999999998653321 2334443322222 24579998788999999999998888
Q ss_pred CccchhhccCCCcHHHHHHCC--CcEEEcCCCCCCCC------CcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHH
Q 011766 315 CPASAMRMLGFAPIKEMLHAD--ICVSLGTDGAPSNN------RMSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 386 (478)
Q Consensus 315 ~p~~~~~~~~~~~~~~~~~~g--v~v~~gsD~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al 386 (478)
.....+ .....++++++.. -++.+-||++...+ ...+..-...+..+.. -.+++.+++.
T Consensus 177 ~g~~t~--~~~~~~~~~~~~ipldrlLlETD~P~~~p~~~~g~~n~P~~i~~v~~~ia~-----------l~g~~~eei~ 243 (265)
T PRK10812 177 SGIVTF--RNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAV-----------LKGVSVEELA 243 (265)
T ss_pred Ceeeec--CccHHHHHHHHhCChhhEEEecCCCCCCCcCCCCCCCCcHHHHHHHHHHHH-----------HhCCCHHHHH
Confidence 753321 1233466777665 47889999863210 0011111111111111 0259999999
Q ss_pred HHHhHHHHHHcCCC
Q 011766 387 RMATINGAKSVLWD 400 (478)
Q Consensus 387 ~~~T~~pA~~lgl~ 400 (478)
+..+.|+.+++++.
T Consensus 244 ~~~~~N~~~lf~~~ 257 (265)
T PRK10812 244 QVTTDNFARLFHID 257 (265)
T ss_pred HHHHHHHHHHHCCC
Confidence 99999999999984
|
|
| >PRK11449 putative deoxyribonuclease YjjV; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00037 Score=63.36 Aligned_cols=138 Identities=11% Similarity=0.059 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEE
Q 011766 234 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVS 313 (478)
Q Consensus 234 ~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~ 313 (478)
.+.+.+.+++|.+++++|.+|+-..... ..+.+...+. .+..+-|+..=+.+..+.+.+.|..+.
T Consensus 113 ~~vf~~ql~lA~~~~~Pv~iH~r~a~~~-------------~~~il~~~~~--~~~~i~H~fsG~~~~a~~~l~~G~~iS 177 (258)
T PRK11449 113 QWLLDEQLKLAKRYDLPVILHSRRTHDK-------------LAMHLKRHDL--PRTGVVHGFSGSLQQAERFVQLGYKIG 177 (258)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCccHH-------------HHHHHHhcCC--CCCeEEEcCCCCHHHHHHHHHCCCEEE
Confidence 3457777899999999999999763322 2334443332 123578998888999999999999988
Q ss_pred ECccchhhccCCCcHHHHHHCC--CcEEEcCCCCCCCCC------cCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHH
Q 011766 314 HCPASAMRMLGFAPIKEMLHAD--ICVSLGTDGAPSNNR------MSIVDEMYLASLINKGREVFANGTTDPAALPAETV 385 (478)
Q Consensus 314 ~~p~~~~~~~~~~~~~~~~~~g--v~v~~gsD~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 385 (478)
+.+..... .....++++..= -.+.+.||+|..... ..+..-......... -.+++.++.
T Consensus 178 ~~g~it~~--~~~~~~~~~~~ipldriL~ETD~P~l~p~~~~~~~n~p~~~~~~~~~ia~-----------l~~~~~~el 244 (258)
T PRK11449 178 VGGTITYP--RASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFDVLCE-----------LRPEPADEI 244 (258)
T ss_pred eCcccccc--CcHHHHHHHHhCChhhEEEecCCCCCCCCCCCCCCCCChHHHHHHHHHHH-----------HHCcCHHHH
Confidence 87654322 112344444321 258899998642100 001111111111111 015899999
Q ss_pred HHHHhHHHHHHcCC
Q 011766 386 LRMATINGAKSVLW 399 (478)
Q Consensus 386 l~~~T~~pA~~lgl 399 (478)
.+..+.|..+++++
T Consensus 245 ~~~~~~N~~~lf~~ 258 (258)
T PRK11449 245 AEVLLNNTYTLFNV 258 (258)
T ss_pred HHHHHHHHHHHhCc
Confidence 99999999999874
|
|
| >COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0015 Score=58.53 Aligned_cols=242 Identities=15% Similarity=0.091 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHHhcCcceeecCC----ccCHHHHHHHHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCcc
Q 011766 122 DSYISTLLCGIELIHSGVTCFAEAG----GQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSIS 197 (478)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (478)
+............++.|+-|++|+- +..+..+.+..+..|++...+..++.... .+ .|..... ++
T Consensus 45 ~~~a~~~~e~~~~~a~Gg~TIVD~T~~~~GRdv~~m~~vs~atglnIV~~TGfy~~~~-~p-~~~~~~~---i~------ 113 (316)
T COG1735 45 DEVALAIAELKRLMARGGQTIVDATNIGIGRDVLKMRRVAEATGLNIVAATGFYKAAF-HP-EYFALRP---IE------ 113 (316)
T ss_pred HHHHHHHHHHHHHHHcCCCeEeeCCccccCcCHHHHHHHHHHhCCcEEEecccccccc-ch-hHHhhCC---HH------
Confidence 4444455566778889999999853 45577788888999999977655543322 11 1111111 11
Q ss_pred ccccchhHHHH-HHHhcCC------CCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcC
Q 011766 198 FNFVSSSQKEL-YAKHHHA------ADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRK 270 (478)
Q Consensus 198 ~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~ 270 (478)
+..++ +++.... ..+.++...+...+-...+..+.++.+..++.|.|+++|........+
T Consensus 114 ------~~ae~~v~ei~~Gi~gT~ikAGiIk~~~~~~~iTp~Eek~lrAaA~A~~~Tg~Pi~tHt~~gt~g~e------- 180 (316)
T COG1735 114 ------ELAEFVVKEIEEGIAGTGIKAGIIKEAGGSPAITPLEEKSLRAAARAHKETGAPISTHTPAGTMGLE------- 180 (316)
T ss_pred ------HHHHHHHHHHHhcccCCccccceeeeccCcccCCHHHHHHHHHHHHHhhhcCCCeEEeccchhhhHH-------
Confidence 22222 3333221 123344333333322223345666667778889999999987663222
Q ss_pred CCCchHHHHhhhCCCCCCeeeeeec-cCChhHH-HHHHhcCCeEEECccch--hhc--cCCCcHHHHHHCCC--cEEEcC
Q 011766 271 VDHGTVTFLDKIEFLQNNLLSAHTV-WVNHTEI-GLLSRAGVKVSHCPASA--MRM--LGFAPIKEMLHADI--CVSLGT 342 (478)
Q Consensus 271 ~~~~~~~~l~~~~~~~~~~~i~h~~-~~~~~~~-~~~~~~~~~~~~~p~~~--~~~--~~~~~~~~~~~~gv--~v~~gs 342 (478)
..+++.+.++--.++.++|+. ..++... +.++..|+.+.+--... +.. ....+..++.++|. .+.++-
T Consensus 181 ----q~~il~~egvdl~~v~igH~d~n~dd~~y~~~l~~~Ga~l~fD~iG~d~y~pd~~r~~~~~~l~~~gy~d~i~ls~ 256 (316)
T COG1735 181 ----QLRILAEEGVDLRKVSIGHMDPNTDDVYYQKKLADRGAFLEFDRIGKDKYYPDEDRIAPLLELVARGYADLILLSH 256 (316)
T ss_pred ----HHHHHHHcCCChhHeeEeccCCCCChHHHHHHHHhcCceEEecccCccccCcHHHhhhhHHHHHHhhHhhheeccc
Confidence 356677777766789999998 4444444 45555687765432211 111 33567788888884 455652
Q ss_pred C-CCCCCCCcCHHHHHHHHHHHhcccccccCCC--------CCCCCCCHHHHHHHHhHHHHHHcCC
Q 011766 343 D-GAPSNNRMSIVDEMYLASLINKGREVFANGT--------TDPAALPAETVLRMATINGAKSVLW 399 (478)
Q Consensus 343 D-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ls~~~al~~~T~~pA~~lgl 399 (478)
| +... .+.+.. ..... . ..+..++ +.+.|++.++.=.+.--||+++|..
T Consensus 257 d~~~~~---~~~~~~--~~~~~-~--~~~g~~~I~~~fIP~Lk~~Gvde~~i~~mlvdNP~r~f~~ 314 (316)
T COG1735 257 DDICLS---DDVFLK--SMLKA-N--GGWGYGYILNDFIPRLKRHGVDEETIDTMLVDNPARLFTA 314 (316)
T ss_pred chhhhh---hhHHHH--hhhhh-c--CCcccchhhHhhHHHHHHcCCCHHHHHHHHhhCHHHHhcc
Confidence 2 2111 111111 00000 0 0000001 2356899666666888899999864
|
|
| >TIGR01431 adm_rel adenosine deaminase-related growth factor | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00011 Score=72.45 Aligned_cols=154 Identities=13% Similarity=0.148 Sum_probs=96.4
Q ss_pred Eeccccc--cCCHHHHHHHH-HHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCC--
Q 011766 224 FGIRQIM--NATDRLLLETR-DMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN-- 298 (478)
Q Consensus 224 ~~~~~~~--~~~~~~l~~~~-~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~-- 298 (478)
+++.+.+ ..+.......+ ..++..|+++.+|+.+....... ....+.++. .++. ..|+||..+.
T Consensus 293 fDL~G~E~~g~pl~~f~~~~~~~~~~~gl~~t~HAGE~~~~g~~---------~d~nl~dAI-lLg~-~RIGHG~~l~~~ 361 (479)
T TIGR01431 293 FDLVGQEDKGRSLLDFIDALLGPSDKEKLPYFFHAGETNWQGTT---------VDENLIDAL-LLNT-TRIGHGFALVKH 361 (479)
T ss_pred EeccCCCCCCCCHHHHHHHHHHHHHhCCCCEEEecCCcCCCCCC---------chhHHHHHH-HcCC-ccccCcccccCC
Confidence 4444443 23444444444 45666899999999986421100 011222222 2222 3479999985
Q ss_pred hhHHHHHHhcCCeEEECccchhhc-----cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCC
Q 011766 299 HTEIGLLSRAGVKVSHCPASAMRM-----LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANG 373 (478)
Q Consensus 299 ~~~~~~~~~~~~~~~~~p~~~~~~-----~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (478)
|+.++.+++.++.+.+||.+|..+ ....|++.++++|++++++||.+...+...+..+.+.+.....
T Consensus 362 P~l~~~vke~~I~lEvCP~SN~~l~~v~~~~~HPl~~lla~Gvpv~InSDDP~~~~~t~Ls~ef~~a~~~~~-------- 433 (479)
T TIGR01431 362 PLVLQMLKERNIAVEVNPISNQVLQLVADLRNHPCAYLFADNYPMVISSDDPAFWGATPLSHDFYIAFMGLA-------- 433 (479)
T ss_pred HHHHHHHHHhCCeEEECccchhhhcccCCcccChHHHHHHCCCcEEEeCCCccccCCCCchHHHHHHHHHhc--------
Confidence 889999999999999999999865 2346899999999999999999765332235555554443210
Q ss_pred CCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 011766 374 TTDPAALPAETVLRMATINGAKSVLWD 400 (478)
Q Consensus 374 ~~~~~~ls~~~al~~~T~~pA~~lgl~ 400 (478)
...+++ +-++.+..|..+...++
T Consensus 434 ---~~~~~l-~~L~~la~NSi~~Sfl~ 456 (479)
T TIGR01431 434 ---SAKADL-RTLKQLALNSIKYSALS 456 (479)
T ss_pred ---ccCCCH-HHHHHHHHHHHHHHCCC
Confidence 001455 34556666777766664
|
Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates. |
| >KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00039 Score=64.92 Aligned_cols=141 Identities=22% Similarity=0.260 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhH--HHHHHhcCC
Q 011766 233 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE--IGLLSRAGV 310 (478)
Q Consensus 233 ~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~--~~~~~~~~~ 310 (478)
+..........+.+.|+++.+|+.+....... ....++ .++ ...|+||.++.++. +.++++.++
T Consensus 225 p~~~f~~vl~~~~~~gi~~t~HaGE~~~~~~~----------v~~~LD---~l~-~~RIGHG~~l~~dp~L~~~~k~~nI 290 (399)
T KOG1097|consen 225 PLSLFLEVLAKAPAKGIHLTFHAGETNGGASV----------VKNALD---LLG-TERIGHGYFLTKDPELINLLKSRNI 290 (399)
T ss_pred ChhhhHHHHHhhhhcCCcEEEEccccCCChHH----------HHHHHH---hhC-CccccCceeccCCHHHHHHHHhcCc
Confidence 44455566666666899999999887521111 112333 222 24589999987554 999999999
Q ss_pred eEEECccchhhc-----cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHH
Q 011766 311 KVSHCPASAMRM-----LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETV 385 (478)
Q Consensus 311 ~~~~~p~~~~~~-----~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 385 (478)
.+.+||.+|... -...|++.++++|+++.++||.+....+..+..+.+.+.... ..+++.++.
T Consensus 291 ~lEiCP~SN~vl~~v~d~rnhp~~~~~~~~vP~vI~sDDP~~f~~~~Lt~dfy~A~~~~------------~~~~~~~~l 358 (399)
T KOG1097|consen 291 ALEICPISNQVLGLVSDLRNHPVARLLAAGVPVVINSDDPGFFGAAPLTLDFYLAFLGI------------APNLDLREL 358 (399)
T ss_pred eEEEccchhhheeccccccccHHHHHHhCCCCEEEeCCCcccccCccccHHHHHHHHhc------------cccCCHHHH
Confidence 999999999765 235689999999999999999876533322222333333211 114778876
Q ss_pred HHHHhHHHHHHcCCC
Q 011766 386 LRMATINGAKSVLWD 400 (478)
Q Consensus 386 l~~~T~~pA~~lgl~ 400 (478)
.+ ++.|+++..-+.
T Consensus 359 ~~-la~nai~~S~l~ 372 (399)
T KOG1097|consen 359 KR-LALNAIKYSFLS 372 (399)
T ss_pred HH-HHHHHhhhccCC
Confidence 65 445777776654
|
|
| >COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0017 Score=55.32 Aligned_cols=148 Identities=12% Similarity=0.109 Sum_probs=87.6
Q ss_pred EeccccccCCHH---HHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChh
Q 011766 224 FGIRQIMNATDR---LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHT 300 (478)
Q Consensus 224 ~~~~~~~~~~~~---~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~ 300 (478)
+|-.+....+++ .+.+-+++|+++++++.+|.....-..... ...+.+...+.-....++.|+ +.+
T Consensus 100 iGEiGLe~~t~~E~evf~~QL~LA~e~dvPviVHTPr~nK~e~t~--------~ildi~~~~~l~~~lvvIDH~---N~e 168 (254)
T COG1099 100 IGEIGLEEATDEEKEVFREQLELARELDVPVIVHTPRRNKKEATS--------KILDILIESGLKPSLVVIDHV---NEE 168 (254)
T ss_pred eeecccccCCHHHHHHHHHHHHHHHHcCCcEEEeCCCCcchhHHH--------HHHHHHHHcCCChhheehhcc---cHH
Confidence 333344444444 466667899999999999996543222111 134555556655555666665 457
Q ss_pred HHHHHHhcCCe--EEECccchhhccCCCcHHHHHHCC-CcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCC
Q 011766 301 EIGLLSRAGVK--VSHCPASAMRMLGFAPIKEMLHAD-ICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDP 377 (478)
Q Consensus 301 ~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~g-v~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (478)
..+.+...+.. +.++|. .+.....+.-..+.| -++.+.||..... .+++.--+.+.... .
T Consensus 169 tv~~vld~e~~vGlTvqPg---Klt~~eAveIV~ey~~~r~ilnSD~~s~~--sd~lavprtal~m~------------~ 231 (254)
T COG1099 169 TVDEVLDEEFYVGLTVQPG---KLTVEEAVEIVREYGAERIILNSDAGSAA--SDPLAVPRTALEME------------E 231 (254)
T ss_pred HHHHHHhccceEEEEecCC---cCCHHHHHHHHHHhCcceEEEeccccccc--ccchhhhHHHHHHH------------H
Confidence 77777776655 455663 112223334445667 6899999975432 23333222222221 2
Q ss_pred CCCCHHHHHHHHhHHHHHHcCC
Q 011766 378 AALPAETVLRMATINGAKSVLW 399 (478)
Q Consensus 378 ~~ls~~~al~~~T~~pA~~lgl 399 (478)
.|++.++.-+.+-.|+-+++|+
T Consensus 232 ~gv~~~~i~kV~~~NA~~~~~l 253 (254)
T COG1099 232 RGVGEEEIEKVVRENALSFYGL 253 (254)
T ss_pred hcCCHHHHHHHHHHHHHHHhCc
Confidence 3688998888888888888876
|
|
| >PRK10425 DNase TatD; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0018 Score=58.83 Aligned_cols=139 Identities=13% Similarity=-0.021 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEE
Q 011766 235 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 314 (478)
Q Consensus 235 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~ 314 (478)
+.+++-+++|.++++|+.+|.-+.... ..+.+.... ......+.|+..=+.+.++++.+.|..+.+
T Consensus 108 ~vF~~ql~lA~~~~~Pv~iH~r~a~~~-------------~l~iL~~~~-~~~~~~i~H~fsG~~~~~~~~l~~G~~~si 173 (258)
T PRK10425 108 RAFVAQLAIAAELNMPVFMHCRDAHER-------------FMALLEPWL-DKLPGAVLHCFTGTREEMQACLARGLYIGI 173 (258)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCchHH-------------HHHHHHHhc-cCCCCeEEEecCCCHHHHHHHHHCCCEEEE
Confidence 456777899999999999999753321 233344321 111124679998899999999999999888
Q ss_pred CccchhhccCCCcHHHHHHC-C-CcEEEcCCCCCCCC----------CcCHHHHHHHHHHHhcccccccCCCCCCCCCCH
Q 011766 315 CPASAMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSNN----------RMSIVDEMYLASLINKGREVFANGTTDPAALPA 382 (478)
Q Consensus 315 ~p~~~~~~~~~~~~~~~~~~-g-v~v~~gsD~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 382 (478)
.+...... ....++++++. . -.+.+-||+|.... ...+..-...+..+.+ -.+++.
T Consensus 174 ~g~i~~~~-~~~~~~~~~~~ipldrlLlETDaP~l~P~~~~~~~~~~~n~P~~i~~v~~~iA~-----------l~~~~~ 241 (258)
T PRK10425 174 TGWVCDER-RGLELRELLPLIPAERLLLETDAPYLLPRDLTPKPASRRNEPAFLPHILQRIAH-----------WRGEDA 241 (258)
T ss_pred Cceeeccc-ccHHHHHHHHhCChHHEEEeccCCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHH-----------HHCcCH
Confidence 76432111 11123444432 1 25778899863211 0112211111221111 125999
Q ss_pred HHHHHHHhHHHHHHcCC
Q 011766 383 ETVLRMATINGAKSVLW 399 (478)
Q Consensus 383 ~~al~~~T~~pA~~lgl 399 (478)
+++.+..+.|.-+++++
T Consensus 242 ~~v~~~~~~N~~~lf~~ 258 (258)
T PRK10425 242 AWLAATTDANARTLFGL 258 (258)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 99999999999998874
|
|
| >COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0035 Score=56.33 Aligned_cols=137 Identities=15% Similarity=0.073 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEE
Q 011766 235 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 314 (478)
Q Consensus 235 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~ 314 (478)
+...+-+++|++.++|+.+|.-+.... ..+.+..... ....+-||..=+.+..+++.+.|..+.+
T Consensus 112 ~~F~~ql~lA~~~~lPviIH~R~A~~d-------------~~~iL~~~~~--~~~gi~HcFsGs~e~a~~~~d~G~yisi 176 (256)
T COG0084 112 EVFEAQLELAKELNLPVIIHTRDAHED-------------TLEILKEEGA--PVGGVLHCFSGSAEEARKLLDLGFYISI 176 (256)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccHHH-------------HHHHHHhcCC--CCCEEEEccCCCHHHHHHHHHcCeEEEE
Confidence 346666799999999999999764332 2334444433 3445789999999999999999988887
Q ss_pred CccchhhccCCCcHHHHHHCC--CcEEEcCCCCCCCC------CcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHH
Q 011766 315 CPASAMRMLGFAPIKEMLHAD--ICVSLGTDGAPSNN------RMSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 386 (478)
Q Consensus 315 ~p~~~~~~~~~~~~~~~~~~g--v~v~~gsD~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al 386 (478)
.....+.. ....++++..= -++.+=||+|.... ...+..-...+..+... .+++.++..
T Consensus 177 sG~itfk~--a~~~~ev~~~iPldrLL~ETDsPyl~P~p~rGkrNeP~~v~~v~~~iAel-----------k~~~~eeva 243 (256)
T COG0084 177 SGIVTFKN--AEKLREVARELPLDRLLLETDAPYLAPVPYRGKRNEPAYVRHVAEKLAEL-----------KGISAEEVA 243 (256)
T ss_pred CceeecCC--cHHHHHHHHhCCHhHeEeccCCCCCCCcCCCCCCCCchHHHHHHHHHHHH-----------hCCCHHHHH
Confidence 76654332 11223332221 13556699863311 00111111111112111 259999999
Q ss_pred HHHhHHHHHHcCC
Q 011766 387 RMATINGAKSVLW 399 (478)
Q Consensus 387 ~~~T~~pA~~lgl 399 (478)
+..|.|.-+++++
T Consensus 244 ~~t~~N~~~lf~~ 256 (256)
T COG0084 244 EITTENAKRLFGL 256 (256)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998874
|
|
| >PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0025 Score=58.12 Aligned_cols=134 Identities=15% Similarity=0.096 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEE
Q 011766 235 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 314 (478)
Q Consensus 235 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~ 314 (478)
+.+.+.+++|+++++++.+|+-..... ..+.+...+.. ....+-|+..-+.++++.+.+.|..+++
T Consensus 111 ~vF~~ql~lA~~~~~pv~iH~r~a~~~-------------~l~il~~~~~~-~~~~i~H~f~g~~~~~~~~~~~g~~~S~ 176 (255)
T PF01026_consen 111 EVFERQLELAKELNLPVSIHCRKAHEE-------------LLEILKEYGPP-NLRVIFHCFSGSPEEAKKFLDLGCYFSF 176 (255)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEESHHHH-------------HHHHHHHTTGG-TSEEEETT--S-HHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHhCCcEEEecCCcHHH-------------HHHHHHhcccc-ceeEEEecCCCCHHHHHHHHhcCceEEe
Confidence 457777899999999999999773221 34455555522 2256789988889999999999999998
Q ss_pred CccchhhccCCCcHHHHHHCC--CcEEEcCCCCCCCC---------CcCHHHHHHHHHHHhcccccccCCCCCCCCCCHH
Q 011766 315 CPASAMRMLGFAPIKEMLHAD--ICVSLGTDGAPSNN---------RMSIVDEMYLASLINKGREVFANGTTDPAALPAE 383 (478)
Q Consensus 315 ~p~~~~~~~~~~~~~~~~~~g--v~v~~gsD~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~ 383 (478)
.+....+. ....++++..= -.+.+-||+|.... +............. .+++++
T Consensus 177 ~~~~~~~~--~~~~~~~~~~ip~drillETD~P~~~~~~~~~~~~~p~~i~~~~~~la~~--------------~~~~~e 240 (255)
T PF01026_consen 177 SGAITFKN--SKKVRELIKAIPLDRILLETDAPYLAPDPYRGKPNEPSNIPKVAQALAEI--------------KGISLE 240 (255)
T ss_dssp EGGGGSTT--SHHHHHHHHHS-GGGEEEE-BTTSSECTTSTTSE--GGGHHHHHHHHHHH--------------HTSTHH
T ss_pred cccccccc--cHHHHHHHhcCChhhEEEcCCCCcCCccccCCCCCChHHHHHHHHHHHHH--------------cCCCHH
Confidence 87644321 22345554332 36889999753211 11112222211111 159999
Q ss_pred HHHHHHhHHHHHHcC
Q 011766 384 TVLRMATINGAKSVL 398 (478)
Q Consensus 384 ~al~~~T~~pA~~lg 398 (478)
++.+....|..+++|
T Consensus 241 ~~~~~~~~N~~r~f~ 255 (255)
T PF01026_consen 241 ELAQIIYENAKRLFG 255 (255)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999875
|
; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A .... |
| >PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3 | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0001 Score=47.15 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=22.3
Q ss_pred CCCeeEEEEccEEEEECCeeecccHHHHHHH
Q 011766 440 TENVVSVMCNGQWVMKNKKILLLMRGRLFQL 470 (478)
Q Consensus 440 ~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~ 470 (478)
...|.+|||||++++++|++++..+|+++++
T Consensus 17 ~~GI~~V~VNG~~vv~~g~~t~~~~G~~lrr 47 (48)
T PF07908_consen 17 AEGIDYVFVNGQIVVEDGEVTGARPGRVLRR 47 (48)
T ss_dssp -BSEEEEEETTEEEECTTEESSS----B---
T ss_pred CCCEEEEEECCEEEEECCeECCCCCCeEecC
Confidence 4689999999999999999999999999875
|
5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A. |
| >PF00449 Urease_alpha: Urease alpha-subunit, N-terminal domain; InterPro: IPR011612 Urease (urea amidohydrolase, 3 | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0021 Score=48.22 Aligned_cols=36 Identities=19% Similarity=0.415 Sum_probs=29.1
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCCh
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSA 57 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~ 57 (478)
..|++|.|+.|++. .. +.+++|.|+||+|+.||+..
T Consensus 65 ~lD~VItNa~IiD~---~G-I~KADIGIkdG~I~gIGkAG 100 (121)
T PF00449_consen 65 ALDLVITNALIIDY---TG-IVKADIGIKDGRIVGIGKAG 100 (121)
T ss_dssp C-SEEEEEEEEEET---TE-EEEEEEEEETTEEEEEE-EB
T ss_pred cccEEEeCcEEEec---CC-cEEeeEEeeCCEEEEEeccC
Confidence 67999999999964 23 56789999999999999864
|
5.1.5 from EC) catalyses the hydrolysis of urea to form ammonia and carbamate. The subunit composition of urease from different sources varies [], but each holoenzyme consists of four structural domains []: three structural domains and a nickel-binding catalytic domain common to amidohydrolases []. Urease is unique among nickel metalloenzymes in that it catalyses a hydrolysis rather than a redox reaction. In Helicobacter pylori, the gamma and beta domains are fused and called the alpha subunit (IPR008223 from INTERPRO). The catalytic subunit (called beta or B) has the same organisation as the Klebsiella alpha subunit. Jack bean (Canavalia ensiformis) urease has a fused gamma-beta-alpha organisation (IPR008221 from INTERPRO). The N-terminal domain is a composite domain and plays a major trimer stabilising role by contacting the catalytic domain of the symmetry related alpha-subunit []. ; GO: 0009039 urease activity, 0016151 nickel ion binding, 0019627 urea metabolic process; PDB: 3LA4_A 2UBP_C 3UBP_C 1UBP_C 1S3T_C 1IE7_C 4UBP_C 1E9Y_B 1E9Z_B 3QGA_O .... |
| >PLN03055 AMP deaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.024 Score=56.74 Aligned_cols=96 Identities=18% Similarity=0.103 Sum_probs=71.8
Q ss_pred eeeeeccC--ChhHHHHHHhcCCeEEECccchhhc---cCCCcHHHHHHCCCcEEEcCCCCCCCCC--cCHHHHHHHHHH
Q 011766 290 LSAHTVWV--NHTEIGLLSRAGVKVSHCPASAMRM---LGFAPIKEMLHADICVSLGTDGAPSNNR--MSIVDEMYLASL 362 (478)
Q Consensus 290 ~i~h~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~~~~~~~~gv~v~~gsD~~~~~~~--~~~~~~~~~~~~ 362 (478)
.|.||..+ ++..+.++...++.+.+||.+|... -...|++.+++.|++|+++||.+..... ..+.++...+..
T Consensus 441 RIgHGi~l~~dP~L~yl~~~~qI~LevCPlSN~~l~~~y~~HP~~~~~~~Gl~VSInTDDPl~f~tT~epL~eEY~~aa~ 520 (602)
T PLN03055 441 NIAHGNNLRKSPGLQYLYYLAQIGLAMSPLSNNSLFLDYHRNPFPMFFARGLNVSLSTDDPLQIHLTKEPLVEEYSIAAQ 520 (602)
T ss_pred eecCccccCCCHHHHHHHHHcCCeEEEccCcchhhccchhhChHHHHHHCCCEEEEcCCCcchhcCCCCcHHHHHHHHHH
Confidence 46898876 4677888899999999999999754 2346899999999999999999755322 235666655543
Q ss_pred HhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 011766 363 INKGREVFANGTTDPAALPAETVLRMATINGAKSVLWD 400 (478)
Q Consensus 363 ~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~ 400 (478)
.- ++|..+.. .++.|+.++.+++
T Consensus 521 ~~--------------~LS~~DL~-eLarNSV~~Sf~~ 543 (602)
T PLN03055 521 VW--------------KLSSCDLC-EIARNSVLQSGFP 543 (602)
T ss_pred Hh--------------CCCHHHHH-HHHHHHHHHhcCC
Confidence 31 48888775 4567888888775
|
|
| >TIGR01429 AMP_deaminase AMP deaminase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.045 Score=55.06 Aligned_cols=133 Identities=17% Similarity=0.198 Sum_probs=86.4
Q ss_pred HHHHHHHHHHcCCc---eeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCC--hhHHHHHHhcCCe
Q 011766 237 LLETRDMAREFKTG---IHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN--HTEIGLLSRAGVK 311 (478)
Q Consensus 237 l~~~~~~a~~~~~~---v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~--~~~~~~~~~~~~~ 311 (478)
+..+=.+-++.|+. +..|+.+..... ....++ +.. ..|.||..+. +....++...++.
T Consensus 424 l~~LN~~R~~rGLnt~~LrpHaGEag~~e--------------~l~~A~--L~a-dRIgHGi~l~~dp~L~yl~~~~qI~ 486 (611)
T TIGR01429 424 IMVLNNFRRERGLNTFLLRPHCGEAGSVD--------------HLVSAF--LTS-HGINHGILLRKVPVLQYLYYLTQIP 486 (611)
T ss_pred HHHHHHHHHHcCCCccceeecCCCCCCHH--------------HHHHHh--hcC-cccccceecCCCHHHHHHHHHcCCe
Confidence 33333444555655 789998754321 111111 221 2378999873 4555666789999
Q ss_pred EEECccchhhc---cCCCcHHHHHHCCCcEEEcCCCCCCCCC--cCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHH
Q 011766 312 VSHCPASAMRM---LGFAPIKEMLHADICVSLGTDGAPSNNR--MSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 386 (478)
Q Consensus 312 ~~~~p~~~~~~---~~~~~~~~~~~~gv~v~~gsD~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al 386 (478)
+.+||.+|... -...|++.++++|++|+++||.+..... ..+.++...+... .+++..+..
T Consensus 487 LevCPtSN~~l~~~y~~HP~~~~~~~Gl~VSLsTDDPl~f~~T~epL~EEY~~aa~~--------------~~Ls~~Dl~ 552 (611)
T TIGR01429 487 IAMSPLSNNSLFLEYSKNPLPEYLHKGLNVSLSTDDPLQFHYTKEALMEEYAIAAQV--------------WKLSTCDMC 552 (611)
T ss_pred EEEcCCcchhhccChhhChHHHHHHCCCeEEEcCCCchhhCCCCCcHHHHHHHHHHH--------------hCCCHHHHH
Confidence 99999999744 2346899999999999999998754221 2355665555432 148888766
Q ss_pred HHHhHHHHHHcCCCC
Q 011766 387 RMATINGAKSVLWDN 401 (478)
Q Consensus 387 ~~~T~~pA~~lgl~~ 401 (478)
+ ++.|+.+..+.++
T Consensus 553 e-LarNSV~~S~~~~ 566 (611)
T TIGR01429 553 E-LARNSVLQSGFEH 566 (611)
T ss_pred H-HHHHHHHHhCCCH
Confidence 5 4668888887753
|
This model describes AMP deaminase, a large, well-conserved eukaryotic protein involved in energy metabolism. Most members of the family have an additional, poorly alignable region of 150 amino acids or more N-terminal to the region included in the model. |
| >cd01319 AMPD AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.03 Score=55.23 Aligned_cols=133 Identities=14% Similarity=0.110 Sum_probs=85.6
Q ss_pred HHHHHHHHHHcC---CceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCC--hhHHHHHHhcCCe
Q 011766 237 LLETRDMAREFK---TGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN--HTEIGLLSRAGVK 311 (478)
Q Consensus 237 l~~~~~~a~~~~---~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~--~~~~~~~~~~~~~ 311 (478)
+..+=.+-++.| +.+..|+.+...... ...+. +.. ..|+||..+. +.....+...++.
T Consensus 312 i~~LN~~R~~rglntf~~r~HaGE~g~~~~--------------l~~al--L~a-dRIGHGv~l~~dp~L~~l~~~~qI~ 374 (496)
T cd01319 312 ITTLNSFRKARGFNTFVLRPHCGEAGDIDH--------------LASAF--LLA-HGISHGINLRKVPVLQYLYYLTQIG 374 (496)
T ss_pred HHHHHHHHHHcCCCCcceeeecCCCCChHH--------------HHHHh--hcC-cccccccccCCCHHHHHHHHHcCCe
Confidence 333334444555 457899987643221 11122 222 3478999874 3444556778999
Q ss_pred EEECccchhhc---cCCCcHHHHHHCCCcEEEcCCCCCCCCC--cCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHH
Q 011766 312 VSHCPASAMRM---LGFAPIKEMLHADICVSLGTDGAPSNNR--MSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 386 (478)
Q Consensus 312 ~~~~p~~~~~~---~~~~~~~~~~~~gv~v~~gsD~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al 386 (478)
+.+||.+|... -...|+..+++.|++|+++||.+..... ..+.++...+... .++|..+..
T Consensus 375 levCPlSN~~l~~~~~~HP~~~~l~~Gl~VsInTDDPl~f~~t~~~L~eEY~~a~~~--------------~~Ls~~Dl~ 440 (496)
T cd01319 375 IAMSPLSNNSLFLSYEKNPFPEFFKRGLNVSLSTDDPLQFHFTKEPLMEEYSIAAQV--------------WKLSTCDMC 440 (496)
T ss_pred EEEecCccHhhhcCcccChHHHHHHCCCeEEEeCCCchhhCCCCCcHHHHHHHHHHH--------------cCCCHHHHH
Confidence 99999999754 2356899999999999999998754321 2356666555433 148887765
Q ss_pred HHHhHHHHHHcCCCC
Q 011766 387 RMATINGAKSVLWDN 401 (478)
Q Consensus 387 ~~~T~~pA~~lgl~~ 401 (478)
.++.|+.+..++++
T Consensus 441 -eLarNSV~~Sf~~~ 454 (496)
T cd01319 441 -ELARNSVLQSGFEH 454 (496)
T ss_pred -HHHHHHHHHhCCCH
Confidence 45678888887753
|
AMPD is a diverse and highly regulated eukaryotic key enzyme of the adenylate catabolic pathway. |
| >cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM) | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.42 Score=43.77 Aligned_cols=100 Identities=16% Similarity=0.137 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCC----------hhHH
Q 011766 233 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN----------HTEI 302 (478)
Q Consensus 233 ~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~----------~~~~ 302 (478)
+.+.+....+.+.++|+++.+|+...... . ....+... ..+.++.|..... .+.+
T Consensus 108 ~~~~~~~~~~~~~~~gl~v~~~~~~~~l~-~-----------l~~l~~~~---~l~ivldH~G~p~~~~~~~~~~~~~~l 172 (263)
T cd01311 108 NKDELDEIAKRAAELGWHVQVYFDAVDLP-A-----------LLPFLQKL---PVAVVIDHFGRPDVTKGVDGAEFAALL 172 (263)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEeCHhhHH-H-----------HHHHHHHC---CCCEEEECCCCCCCCCCCCCHhHHHHH
Confidence 66678888999999999999998642221 0 22333333 4678889977543 1223
Q ss_pred HHHHhcCCeEEECccchhhcc-----CC-CcHHHHHHCC-CcEEEcCCCCCC
Q 011766 303 GLLSRAGVKVSHCPASAMRML-----GF-APIKEMLHAD-ICVSLGTDGAPS 347 (478)
Q Consensus 303 ~~~~~~~~~~~~~p~~~~~~~-----~~-~~~~~~~~~g-v~v~~gsD~~~~ 347 (478)
+.++.-++.+.++-....... .. +-++.+++.| -++.+|||.+..
T Consensus 173 ~~l~~pNV~~k~Sg~~~~~~~~~~~~~~~~~~~~~~~~g~dRlmfGSD~P~~ 224 (263)
T cd01311 173 KLIEEGNVWVKVSGPYRLSVKQEAYADVIAFARQIVAAAPDRLVWGTDWPHP 224 (263)
T ss_pred HHHhcCCEEEEecchhhcCCCCCCHHHHHHHHHHHHHhCCCcEEEeCCCCCC
Confidence 333223555554432111000 01 1223344556 579999999764
|
This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature. |
| >PLN02768 AMP deaminase | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.065 Score=55.13 Aligned_cols=96 Identities=18% Similarity=0.143 Sum_probs=70.4
Q ss_pred eeeeeccC--ChhHHHHHHhcCCeEEECccchhhc---cCCCcHHHHHHCCCcEEEcCCCCCCCCC--cCHHHHHHHHHH
Q 011766 290 LSAHTVWV--NHTEIGLLSRAGVKVSHCPASAMRM---LGFAPIKEMLHADICVSLGTDGAPSNNR--MSIVDEMYLASL 362 (478)
Q Consensus 290 ~i~h~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~~~~~~~~gv~v~~gsD~~~~~~~--~~~~~~~~~~~~ 362 (478)
.|.||..+ ++....++...++.+.+||.+|... -...|++.+++.|++|+++||.+...+. ..+.++...+..
T Consensus 674 RIgHGv~l~kdP~LqyL~~l~qIgLevCPlSN~~l~~~y~~HPf~~f~~~GL~VSLNTDDPL~fhtT~epL~EEYsvAak 753 (835)
T PLN02768 674 NIAHGINLRKSPVLQYLYYLAQIGLAMSPLSNNSLFLDYHRNPFPMFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAAS 753 (835)
T ss_pred ccCCccccCcCHHHHHHHHHcCCeEEECCCcchhhhcchhhChHHHHHHCCCEEEEcCCCccccCCCCCCHHHHHHHHHH
Confidence 36888887 3556667788899999999999754 2356999999999999999999765322 136666665553
Q ss_pred HhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 011766 363 INKGREVFANGTTDPAALPAETVLRMATINGAKSVLWD 400 (478)
Q Consensus 363 ~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~ 400 (478)
.. +++..+..++ +.|+..+.+++
T Consensus 754 ~~--------------~LS~~DL~EL-arNSV~aSff~ 776 (835)
T PLN02768 754 VW--------------KLSSCDLCEI-ARNSVYQSGFS 776 (835)
T ss_pred Hh--------------CcCHHHHHHH-HHHHHHHhcCC
Confidence 32 4888877654 66888888775
|
|
| >PTZ00310 AMP deaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.14 Score=56.11 Aligned_cols=95 Identities=18% Similarity=0.191 Sum_probs=71.5
Q ss_pred eeeeeccC--ChhHHHHHHhcCCeEEECccchhhc---cCCCcHHHHHHCCCcEEEcCCCCCCCCCcC---HHHHHHHHH
Q 011766 290 LSAHTVWV--NHTEIGLLSRAGVKVSHCPASAMRM---LGFAPIKEMLHADICVSLGTDGAPSNNRMS---IVDEMYLAS 361 (478)
Q Consensus 290 ~i~h~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~---~~~~~~~~~ 361 (478)
.|.||..+ ++..+.++...++.+.+||.+|... -...|+..+++.|++|+++||.+... +.. +.++...+.
T Consensus 1134 RIgHGi~l~~dp~L~yl~~l~qI~LevCPlSN~~l~~sy~~hP~~~f~~~Gl~VSLnTDDPl~f-~tT~EpL~eEYsiaa 1212 (1453)
T PTZ00310 1134 SICHGINLRNDPPMQYLYYLAQIGLHVSPLSNNALFLAFLENPFPVFFHRGLNVSLSTDDPLMF-HQTQEPLIEEYSIAA 1212 (1453)
T ss_pred cccchhhhCcCHHHHHHHHHcCCeEEECCCchHhhhhchhhCcHHHHHHCCCEEEECCCCcccc-CCCcccHHHHHHHHH
Confidence 47899987 4566678888999999999999654 23569999999999999999997553 223 566665554
Q ss_pred HHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 011766 362 LINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWD 400 (478)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~ 400 (478)
... ++|..+..++ ..|+..+-|.+
T Consensus 1213 ~~~--------------~LS~~Dl~el-arNSV~~SGf~ 1236 (1453)
T PTZ00310 1213 RVW--------------GLSLNDLCEI-ARNSVLQSGFD 1236 (1453)
T ss_pred HHh--------------CCCHHHHHHH-HHHHHHHcCCC
Confidence 331 5888877754 66888888875
|
|
| >PRK06361 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.11 Score=45.98 Aligned_cols=96 Identities=14% Similarity=0.054 Sum_probs=64.1
Q ss_pred eeeeeeccCChhHHHHHHhcCCeEEECccchhhccCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccc
Q 011766 289 LLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGRE 368 (478)
Q Consensus 289 ~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (478)
.+++|...+..+.++.+++.++.+.++............++...+.|++++++||.... .+.. .+..+....
T Consensus 115 dvlaHpd~~~~~~~~~~~~~~~~lEin~~~~~~~~~~~~l~~a~~~gi~vv~~SDaH~~---~d~~-~~~~~~~i~---- 186 (212)
T PRK06361 115 DILAHPGLITEEEAELAAENGVFLEITARKGHSLTNGHVARIAREAGAPLVINTDTHAP---SDLI-TYEFARKVA---- 186 (212)
T ss_pred cEecCcchhhHHHHHHHHHcCeEEEEECCCCcccchHHHHHHHHHhCCcEEEECCCCCH---HHHH-HHHHHHHHH----
Confidence 46788887778888999999998887652211111123345556789999999997522 2222 222222221
Q ss_pred cccCCCCCCCCCCHHHHHHHHhHHHHHHcCC
Q 011766 369 VFANGTTDPAALPAETVLRMATINGAKSVLW 399 (478)
Q Consensus 369 ~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl 399 (478)
...+++.++++.+.+.||+.++++
T Consensus 187 -------~~~gl~~~~v~~~~~~~~~~~~~~ 210 (212)
T PRK06361 187 -------LGAGLTEKELEEALENNPKLLLKR 210 (212)
T ss_pred -------cCCCCCHHHHHHHHHHhHHHHHHh
Confidence 234799999999999999999865
|
|
| >PTZ00310 AMP deaminase; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.33 Score=53.43 Aligned_cols=95 Identities=14% Similarity=0.130 Sum_probs=64.4
Q ss_pred eeeeeccCC-hhHHHHH-HhcCCeEEECccchhhcc----CCCcHHHHHHCCCcEEEcCCCCCCCCCc--CHHHHHHHHH
Q 011766 290 LSAHTVWVN-HTEIGLL-SRAGVKVSHCPASAMRML----GFAPIKEMLHADICVSLGTDGAPSNNRM--SIVDEMYLAS 361 (478)
Q Consensus 290 ~i~h~~~~~-~~~~~~~-~~~~~~~~~~p~~~~~~~----~~~~~~~~~~~gv~v~~gsD~~~~~~~~--~~~~~~~~~~ 361 (478)
.|.||..+. +..+..+ ...++.+.+||.+|.... ...|++.++++|++|++.||.+...+.. .+.++...+.
T Consensus 504 RI~HGi~l~d~p~LqyL~~e~qI~LeVCPlSN~~l~v~sy~~HPi~~fl~~GL~VSLNTDDPl~F~tt~EpL~EEY~iaa 583 (1453)
T PTZ00310 504 VITRATSIADYPVLQYLCGLHRVGLTVSPLRDHALSITAYFDHPLPKFLHRCLRVSISTSDPLYFHHHSQPLIEEYATAM 583 (1453)
T ss_pred cccchhccCchHHHHHHHHHcCCeEEECCCcccccCCCchhhCcHHHHHHCCCEEEECCCCccccCCCCccHHHHHHHHH
Confidence 467887764 3344444 488999999999997652 3468999999999999999997653321 3556665554
Q ss_pred HHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCC
Q 011766 362 LINKGREVFANGTTDPAALPAETVLRMATINGAKSVLW 399 (478)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl 399 (478)
... +++..+..++ +.|+....++
T Consensus 584 q~~--------------gLS~~DL~eL-arNSV~aSf~ 606 (1453)
T PTZ00310 584 KLF--------------SLSPLDTTEL-ARNSVLNSSF 606 (1453)
T ss_pred HHh--------------CcCHHHHHHH-HHHHHHHhCC
Confidence 321 4777666543 4566665554
|
|
| >COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.37 E-value=5.5 Score=37.05 Aligned_cols=142 Identities=15% Similarity=0.115 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchH---HHHhhhCCCCCCeeeeeec--cC-ChhHHHHHHh
Q 011766 234 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTV---TFLDKIEFLQNNLLSAHTV--WV-NHTEIGLLSR 307 (478)
Q Consensus 234 ~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~i~h~~--~~-~~~~~~~~~~ 307 (478)
+..+..+.+.|.++|+++.+|............. ...+. .++.... .-+.++.|+. .. ..+.+..+..
T Consensus 143 ~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~----~~~p~~~~~va~~fP--~l~IVl~H~G~~~p~~~~a~~~a~~ 216 (293)
T COG2159 143 DPRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKG----HSDPLYLDDVARKFP--ELKIVLGHMGEDYPWELEAIELAYA 216 (293)
T ss_pred ChHHHHHHHHHHHcCCCEEEEeCCCCCCcccccC----CCCchHHHHHHHHCC--CCcEEEEecCCCCchhHHHHHHHHh
Confidence 3347788999999999999999765432211100 00111 2233222 3457899986 32 2333333333
Q ss_pred -cCCeEEECccchhhccCCCcHHHHHHCC-CcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHH
Q 011766 308 -AGVKVSHCPASAMRMLGFAPIKEMLHAD-ICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETV 385 (478)
Q Consensus 308 -~~~~~~~~p~~~~~~~~~~~~~~~~~~g-v~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 385 (478)
.++.+...-..-... ...-++.+.+.+ -++.+|||.+.. .+. ....... ..+++.+.-
T Consensus 217 ~~nvy~d~s~~~~~~~-~~~~~~~~~~~~~dkilFGSD~P~~----~~~--~~l~~~~-------------~l~l~~e~k 276 (293)
T COG2159 217 HPNVYLDTSGVRPKYF-APPLLEFLKELGPDKILFGSDYPAI----HPE--VWLAELD-------------ELGLSEEVK 276 (293)
T ss_pred CCCceeeeeccccccC-ChHHHHHHHhcccCeEEecCCCCCc----CHH--HHHHHHH-------------hcCCCHHHH
Confidence 244444332211100 002345555533 589999997543 222 2222221 124777777
Q ss_pred HHHHhHHHHHHcCCCC
Q 011766 386 LRMATINGAKSVLWDN 401 (478)
Q Consensus 386 l~~~T~~pA~~lgl~~ 401 (478)
-+..-.|+++++++..
T Consensus 277 ~kiL~~NA~rll~l~~ 292 (293)
T COG2159 277 EKILGENAARLLGLDP 292 (293)
T ss_pred HHHHHHhHHHHhCcCC
Confidence 7888899999999853
|
|
| >PRK00912 ribonuclease P protein component 3; Provisional | Back alignment and domain information |
|---|
Probab=92.01 E-value=1.3 Score=39.75 Aligned_cols=98 Identities=12% Similarity=0.072 Sum_probs=59.6
Q ss_pred ChhHHHHHHhcCCeEEECccchhhcc------CC----CcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhccc
Q 011766 298 NHTEIGLLSRAGVKVSHCPASAMRML------GF----APIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGR 367 (478)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~p~~~~~~~------~~----~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~ 367 (478)
.+..++.+++.|+.+.+......+.. .. ..++...+.|++++++||......-.++...+..+.
T Consensus 120 ~~~~~~~a~~~gv~lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh~~~~l~~~~~~~~l~~------ 193 (237)
T PRK00912 120 NHVLAKEAARNNVAIEFNLRDILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAMSCYDLRSPREMIALAE------ 193 (237)
T ss_pred CHHHHHHHHHCCeEEEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcccccCCHHHHHHHHH------
Confidence 45667888888988876654322211 01 233455667999999999754321122333222222
Q ss_pred ccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC-CCccccccCc
Q 011766 368 EVFANGTTDPAALPAETVLRMATINGAKSVLWD-NDIGSLEAGK 410 (478)
Q Consensus 368 ~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~-~~~G~l~~G~ 410 (478)
..|++.++++.+.+.+|.+++... .+.+.|..|.
T Consensus 194 ---------~~Gl~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 228 (237)
T PRK00912 194 ---------LFGMEEDEALKALSYYPESIIKKNRNRKNYVIEGV 228 (237)
T ss_pred ---------HcCCCHHHHHHHHHHhHHHHHHhhccCCCcccccE
Confidence 126999999999999999998753 2334444443
|
|
| >PF12890 DHOase: Dihydro-orotase-like; InterPro: IPR024403 This entry represents a small family of dihydro-orotase-like proteins from bacteria | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.06 Score=42.10 Aligned_cols=16 Identities=44% Similarity=0.982 Sum_probs=14.7
Q ss_pred CCEEeecccccccccc
Q 011766 75 SQILLPGFVNTHVHTS 90 (478)
Q Consensus 75 G~~v~PGfID~H~H~~ 90 (478)
|++++|||||.|+|+.
T Consensus 1 ~kli~~g~vd~hVhlr 16 (142)
T PF12890_consen 1 GKLILPGLVDVHVHLR 16 (142)
T ss_pred Cceeehhhhhhhhhhh
Confidence 6899999999999983
|
|
| >PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily [] | Back alignment and domain information |
|---|
Probab=88.81 E-value=2.1 Score=39.08 Aligned_cols=167 Identities=12% Similarity=0.057 Sum_probs=79.0
Q ss_pred CCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeee
Q 011766 214 HAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAH 293 (478)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h 293 (478)
..+-..+++..........++.....+.+.|.++|+++.+|+............... ......+... .+-+.++.|
T Consensus 96 ~~g~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~~~~~~~~~--~~~~~~~~~~--P~l~ii~~H 171 (273)
T PF04909_consen 96 ELGFRGVKLHPDLGGFDPDDPRLDDPIFEAAEELGLPVLIHTGMTGFPDAPSDPADP--EELEELLERF--PDLRIILAH 171 (273)
T ss_dssp TTTESEEEEESSETTCCTTSGHCHHHHHHHHHHHT-EEEEEESHTHHHHHHHHHHHH--HHHTTHHHHS--TTSEEEESG
T ss_pred ccceeeeEecCCCCccccccHHHHHHHHHHHHhhccceeeeccccchhhhhHHHHHH--HHHHHHHHHh--cCCeEEEec
Confidence 444444554433333333344444588999999999999996511111100000000 0011122222 234678889
Q ss_pred eccC--Ch-hHHHHHHhc-CCeEEECccc-----hhhccCCCcHHHHHH-CC-CcEEEcCCCCCCCCCcCHHHHHHHHHH
Q 011766 294 TVWV--NH-TEIGLLSRA-GVKVSHCPAS-----AMRMLGFAPIKEMLH-AD-ICVSLGTDGAPSNNRMSIVDEMYLASL 362 (478)
Q Consensus 294 ~~~~--~~-~~~~~~~~~-~~~~~~~p~~-----~~~~~~~~~~~~~~~-~g-v~v~~gsD~~~~~~~~~~~~~~~~~~~ 362 (478)
+... .. +.+.++.+. ++.+...-.. .........+..+++ .| -++.+|||.+.... ............
T Consensus 172 ~G~~~~~~~~~~~l~~~~~nvy~d~s~~~~~~~~~~~~~~~~~l~~~~~~~g~drilfGSD~P~~~~-~~~~~~~~~~~~ 250 (273)
T PF04909_consen 172 LGGPFPWWEEALRLLDRFPNVYVDLSGIPPFWYFWPPSFDRPFLRRAVDEFGPDRILFGSDYPHPDG-ASPYEYIWEAYF 250 (273)
T ss_dssp GGTTHHHHHHHHHHHHHHTTEEEECHSHHSSEEEETTHHCHHHHHHHHHHHTGGGEEEE--TTSSTH-HHHHHHHHHHHH
T ss_pred CcccchhHHHHHHHHHhCCcccccccccccccccCcccccHHHHHHHHHHhCCceEEecCCCCCCCc-cccHHHHHHhhh
Confidence 8886 22 334444443 4554433210 000011233444443 34 48999999865421 111111111111
Q ss_pred HhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCC
Q 011766 363 INKGREVFANGTTDPAALPAETVLRMATINGAKSVLW 399 (478)
Q Consensus 363 ~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl 399 (478)
.. .+|.++.=+....|++++++|
T Consensus 251 ~~--------------~l~~~~~~~i~~~NA~rl~~l 273 (273)
T PF04909_consen 251 LD--------------DLSEEEREKILYDNARRLYGL 273 (273)
T ss_dssp HH--------------HSSHHHHHHHHTHHHHHHHTC
T ss_pred cc--------------CCCHHHHHHHHhHhHHHHcCc
Confidence 10 158888888999999999875
|
The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. |
| >COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.02 E-value=3.7 Score=37.40 Aligned_cols=107 Identities=14% Similarity=0.223 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHH-HHhhh--CCCCCCeeeeeeccCChhHHHHHHhcC--
Q 011766 235 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVT-FLDKI--EFLQNNLLSAHTVWVNHTEIGLLSRAG-- 309 (478)
Q Consensus 235 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~-~l~~~--~~~~~~~~i~h~~~~~~~~~~~~~~~~-- 309 (478)
+.+...++...+.|+++.+|........+.... ....++ .++.. ....-+.+++|++. .+.++.+++.+
T Consensus 118 ~~~~pvle~Mq~~gmpLlvHGEvt~~~vDifdr----E~~Fi~~vl~pl~~~fP~LKIV~EHiTT--~dav~~v~~~~~n 191 (344)
T COG0418 118 EKIYPVLEAMQKIGMPLLVHGEVTDAEVDIFDR----EAAFIESVLEPLRQRFPKLKIVLEHITT--KDAVEYVKDANNN 191 (344)
T ss_pred HHHHHHHHHHHHcCCeEEEecccCCccccchhh----HHHHHHHHHHHHHhhCCcceEEEEEecc--HHHHHHHHhcCcc
Confidence 455666788889999999998655443321110 001222 33322 22334578899885 55566666665
Q ss_pred CeEEECccchhh-----c-cCC----------------CcHHHHHHCC-CcEEEcCCCCCC
Q 011766 310 VKVSHCPASAMR-----M-LGF----------------APIKEMLHAD-ICVSLGTDGAPS 347 (478)
Q Consensus 310 ~~~~~~p~~~~~-----~-~~~----------------~~~~~~~~~g-v~v~~gsD~~~~ 347 (478)
+...++|.+.+. . +++ ..++++.-.| .++.+|||+.|+
T Consensus 192 laATIT~hHL~~nrnd~l~Ggi~Ph~fClPilKr~~hr~AL~~aa~sg~~kfFlGtDSAPH 252 (344)
T COG0418 192 LAATITPHHLLLNRNDMLVGGIRPHLFCLPILKRETHREALREAATSGHPKFFLGTDSAPH 252 (344)
T ss_pred eeeEeehhheeeehhhhhcCCCCcceeeeccccchhhHHHHHHHHhcCCCcEEecCCCCCC
Confidence 566677764321 1 222 1233444445 789999999876
|
|
| >COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.42 E-value=39 Score=30.82 Aligned_cols=136 Identities=10% Similarity=0.020 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCC-CCCCeeeeeeccCC---------hhHHHH
Q 011766 235 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEF-LQNNLLSAHTVWVN---------HTEIGL 304 (478)
Q Consensus 235 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~h~~~~~---------~~~~~~ 304 (478)
+.+++.++..+..|+.+..+....+-. ..+..... ...++++.|+.... .+.+.+
T Consensus 124 ~~~r~~~~rL~~~gl~fdl~~~~~ql~---------------~~i~l~~~~Pd~~~VldH~G~p~~~~~~~~~w~~~m~~ 188 (279)
T COG3618 124 PAWRANVERLAKLGLHFDLQVDPHQLP---------------DLIPLALKAPDVNFVLDHCGRPDIKINLEDPWKAALAR 188 (279)
T ss_pred HHHHHHHHHHHhcCCeEEEEeChhhhH---------------HHHHHHhhCCCCCEEeccCCCCCccccccCHHHHHHHH
Confidence 567888888888999988877653321 11222222 22567888887752 123344
Q ss_pred HHhc-CCeEEECccchhhcc--CCCcH----HHHH-HCC-CcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCC
Q 011766 305 LSRA-GVKVSHCPASAMRML--GFAPI----KEML-HAD-ICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTT 375 (478)
Q Consensus 305 ~~~~-~~~~~~~p~~~~~~~--~~~~~----~~~~-~~g-v~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (478)
+++. ++.+...-....... ....+ ..++ ..| -++.+|||++...-..++ ..+..+. .. +.
T Consensus 189 la~~pNv~~KlSG~~~~~~~~w~~~~v~p~~e~~i~~fg~dR~vfGSdwPv~~l~~~~-~~~~~~~-~~---------~v 257 (279)
T COG3618 189 LARRPNVWAKLSGVYAYSDESWTVEDVRPYVEELIELFGWDRFVFGSDWPVTSLESDF-ASWVAAT-RE---------LV 257 (279)
T ss_pred HHhCCCeEEEEeeecccccCCCCHHHHHHHHHHHHHhcCccceEecCCCCcccccCCh-HHHHHHH-HH---------Hc
Confidence 4443 443333221111111 11122 2333 235 689999999765322222 2221111 11 00
Q ss_pred CCCCCCHHHHHHHHhHHHHHHcCC
Q 011766 376 DPAALPAETVLRMATINGAKSVLW 399 (478)
Q Consensus 376 ~~~~ls~~~al~~~T~~pA~~lgl 399 (478)
.+ +..+=-+....||++++++
T Consensus 258 --~~-~~~er~~i~~~NA~rly~~ 278 (279)
T COG3618 258 --PG-DAAERARILVDNARRLYRL 278 (279)
T ss_pred --CC-CHHHHHHHHhhCHHHHhCC
Confidence 12 5777778889999998865
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 478 | ||||
| 3hpa_A | 479 | Crystal Structure Of An Amidohydrolase Gi:44264246 | 3e-46 | ||
| 3lnp_A | 468 | Crystal Structure Of Amidohydrolase Family Protein | 8e-45 | ||
| 4dyk_A | 451 | Crystal Structure Of An Adenosine Deaminase From Ps | 6e-44 | ||
| 4f0r_A | 447 | Crystal Structure Of An Adenosine Deaminase Homolog | 4e-38 | ||
| 4dzh_A | 472 | Crystal Structure Of An Adenosine Deaminase From Xa | 2e-37 | ||
| 1p1m_A | 406 | Structure Of Thermotoga Maritima Amidohydrolase Tm0 | 2e-35 | ||
| 1j6p_A | 418 | Crystal Structure Of Metal-Dependent Hydrolase Of C | 1e-30 | ||
| 2paj_A | 492 | Crystal Structure Of An Amidohydrolase From An Envi | 1e-23 | ||
| 3ls9_A | 456 | Crystal Structure Of Atrazine Chlorohydrolase Trzn | 1e-21 | ||
| 2uz9_A | 476 | Human Guanine Deaminase (Guad) In Complex With Zinc | 3e-21 | ||
| 3lsb_A | 456 | Crystal Structure Of The Mutant E241q Of Atrazine C | 3e-21 | ||
| 3e0l_A | 455 | Computationally Designed Ammelide Deaminase Length | 4e-20 | ||
| 2i9u_A | 439 | Crystal Structure Of Guanine Deaminase From C. Acet | 3e-14 | ||
| 2ood_A | 475 | Crystal Structure Of Guanine Deaminase From Bradyrh | 3e-13 | ||
| 3v7p_A | 427 | Crystal Structure Of Amidohydrolase Nis_0429 (Targe | 3e-09 | ||
| 2bb0_A | 421 | Structure Of Imidazolonepropionase From Bacillus Su | 5e-04 |
| >pdb|3HPA|A Chain A, Crystal Structure Of An Amidohydrolase Gi:44264246 From An Evironmental Sample Of Sargasso Sea Length = 479 | Back alignment and structure |
|
| >pdb|3LNP|A Chain A, Crystal Structure Of Amidohydrolase Family Protein Olei01672_1_465 From Oleispira Antarctica Length = 468 | Back alignment and structure |
|
| >pdb|4DYK|A Chain A, Crystal Structure Of An Adenosine Deaminase From Pseudomonas Aeruginosa Pao1 (Target Nysgrc-200449) With Bound Zn Length = 451 | Back alignment and structure |
|
| >pdb|4F0R|A Chain A, Crystal Structure Of An Adenosine Deaminase Homolog From Chromobacterium Violaceum (Target Nysgrc-019589) Bound Zn And 5'- Methylthioadenosine (Unproductive Complex) Length = 447 | Back alignment and structure |
|
| >pdb|4DZH|A Chain A, Crystal Structure Of An Adenosine Deaminase From Xanthomonas Campestris (Target Nysgrc-200456) With Bound Zn Length = 472 | Back alignment and structure |
|
| >pdb|1P1M|A Chain A, Structure Of Thermotoga Maritima Amidohydrolase Tm0936 Bound To Ni And Methionine Length = 406 | Back alignment and structure |
|
| >pdb|1J6P|A Chain A, Crystal Structure Of Metal-Dependent Hydrolase Of CytosinedemaniaseCHLOROHYDROLASE FAMILY (TM0936) FROM THERMOTOGA Maritima At 1.9 A Resolution Length = 418 | Back alignment and structure |
|
| >pdb|2PAJ|A Chain A, Crystal Structure Of An Amidohydrolase From An Environmental Sample Of Sargasso Sea Length = 492 | Back alignment and structure |
|
| >pdb|3LS9|A Chain A, Crystal Structure Of Atrazine Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1 Complexed With Zinc Length = 456 | Back alignment and structure |
|
| >pdb|2UZ9|A Chain A, Human Guanine Deaminase (Guad) In Complex With Zinc And Its Product Xanthine. Length = 476 | Back alignment and structure |
|
| >pdb|3LSB|A Chain A, Crystal Structure Of The Mutant E241q Of Atrazine Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1 Complexed With Zinc And Ametrin Length = 456 | Back alignment and structure |
|
| >pdb|3E0L|A Chain A, Computationally Designed Ammelide Deaminase Length = 455 | Back alignment and structure |
|
| >pdb|2I9U|A Chain A, Crystal Structure Of Guanine Deaminase From C. Acetobutylicum With Bound Guanine In The Active Site Length = 439 | Back alignment and structure |
|
| >pdb|2OOD|A Chain A, Crystal Structure Of Guanine Deaminase From Bradyrhizobium Japonicum Length = 475 | Back alignment and structure |
|
| >pdb|3V7P|A Chain A, Crystal Structure Of Amidohydrolase Nis_0429 (Target Efi-500396) From Nitratiruptor Sp. Sb155-2 Length = 427 | Back alignment and structure |
|
| >pdb|2BB0|A Chain A, Structure Of Imidazolonepropionase From Bacillus Subtilis Length = 421 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica} Length = 468 | Back alignment and structure |
|---|
Score = 479 bits (1236), Expect = e-167
Identities = 126/467 (26%), Positives = 221/467 (47%), Gaps = 39/467 (8%)
Query: 4 NSSGGGSSSGSLGSSSTMILHNAVIVTMD------KESRVFRNGGVFVVQDRIKAIGQSA 57
+ S + + + +++ I+ ++ S + + + + I AI +
Sbjct: 8 SESNLAQRQSQPKAHADLRINSHWIIPIENTTDHNLVSNILIDHCLLIKDGIILAIEPQS 67
Query: 58 DILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESN 117
A + +DL Q+L+PG+VN H H + L +G+ADD+ LMTWL + +WP E+
Sbjct: 68 SCQIP----ATETLDLGQQVLMPGWVNAHGHAAMSLFRGLADDLPLMTWLQEHVWPAEAQ 123
Query: 118 MT-EEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEG 176
E T L E+I SG T FA+ + + +A G+RA +D
Sbjct: 124 HVDEHFVKQGTELAIAEMIQSGTTTFADMYF-YPQQSGEAALAAGIRAVCFAPVLD---- 178
Query: 177 LPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRL 236
P ++A + D+ I+ +I N + + H G ++I FG +D
Sbjct: 179 FPTNYA-QNADEYIR--KAIECN-------DRFNNHPMNEQGLVQIGFGPHAPYTVSDEP 228
Query: 237 LLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHG--TVTFLDKIEFLQNNLLSAHT 294
L E ++ + + +H+ E +E ++T L I FL + H
Sbjct: 229 LKEITMLSDQLDMPVQIHLHETDFEVSESLET----FNKRPTQRLADIGFLNERVSCVHM 284
Query: 295 VWVNHTEIGLLSRAGVKVSHCPASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSI 353
V+ +I +L + G + HCP S +++ GF PI ++ A+I +++GTDGA SNN + +
Sbjct: 285 TQVDDGDIKILQKTGASIIHCPESNLKLASGFCPIAKLSAANIPLAIGTDGAASNNDLDM 344
Query: 354 VDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKAD 413
E A+L+ KG + D +A+PA L MAT+ GA+++ D+ GSL+ GK AD
Sbjct: 345 FSETKTAALLAKGV------SQDASAIPAIEALTMATLGGARALGIDDITGSLKPGKAAD 398
Query: 414 MVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKIL 460
+ +D + PV D ++ +VYC ++ V V NG+ ++KN ++
Sbjct: 399 IQAIDLNTLSSQPVFDPVSHMVYCTKSTQVSHVWVNGRCLLKNGELT 445
|
| >4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A* Length = 447 | Back alignment and structure |
|---|
Score = 461 bits (1189), Expect = e-161
Identities = 122/443 (27%), Positives = 214/443 (48%), Gaps = 37/443 (8%)
Query: 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPG 81
I+ I+T++ + V N + + +I AI +AD AD+ ++L +L+PG
Sbjct: 9 IISARWIITVETDGEVLENHAIAIRDGKIAAIIPAADAAGLE---ADERLELPDHVLMPG 65
Query: 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDS-YISTLLCGIELIHSGVT 140
+N H H++ L +G+ADD LM WL + IWP E +D + +LL E+I G T
Sbjct: 66 LINLHGHSAMSLLRGLADDKALMDWLTNYIWPTEGKHVHDDFVFDGSLLAMGEMIRGGTT 125
Query: 141 CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNF 200
+ + + +A+A G+R + S ++ P ++A DD I
Sbjct: 126 TINDMYF-YNAAVARAGLASGMRTFVGCSILE----FPTNYA-SNADDYIA--------- 170
Query: 201 VSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 260
K + + + + +D + +A + IH H+ E
Sbjct: 171 -----KGMAERSQFLGEDLLTFTLAPHAPYTVSDDTFRKVVTLAEQEDMLIHCHIHETAD 225
Query: 261 ENQVVMDTRKVDHG--TVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPAS 318
E + HG + L ++ L L++AH V +N E+ L +R G+ +H PAS
Sbjct: 226 EVNNSVKE----HGQRPLARLQRLGLLSPRLVAAHMVHLNDAEVELAARHGLSTAHNPAS 281
Query: 319 AMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDP 377
M++ G +P+ +++ A + V +GTDGA SNN++ ++ E LA+L+ K T DP
Sbjct: 282 NMKLASGISPVSKLMDAGVAVGIGTDGAASNNKLDMLAETRLAALLAKVG------TLDP 335
Query: 378 AALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYC 437
++PA +RMAT+NGA+++ + +GS++ GK+AD++ +D P D I+ +VY
Sbjct: 336 TSVPAAAAIRMATLNGARALGIADKVGSVKVGKQADLIALDLAQLETAPAFDPISHVVYA 395
Query: 438 MRTENVVSVMCNGQWVMKNKKIL 460
E V V G+ +M+ +K+
Sbjct: 396 AGREQVSHVWVKGRALMRERKLT 418
|
| >4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV} Length = 472 | Back alignment and structure |
|---|
Score = 461 bits (1188), Expect = e-160
Identities = 116/444 (26%), Positives = 194/444 (43%), Gaps = 36/444 (8%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+++ +V ++ + V + V V I A+ +AD +F+ + + L+P
Sbjct: 16 LLIEAGYVVPIEPHAVVLEDHAVAVSNGVIVAVLPTADARVRFA--PARTVSRPDAALMP 73
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMT-EEDSYISTLLCGIELIHSGV 139
G VN H H L +G+ADD+ LM WL IWP E+ + E T L E++ G
Sbjct: 74 GLVNAHTHNPMTLLRGVADDLPLMVWLQQHIWPVEAAVIGPEFVADGTTLAIAEMLRGGT 133
Query: 140 TCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFN 199
TC E A + G RA + +D P +WA + D+
Sbjct: 134 TCVNE-NYFFADVQAAVYKQHGFRALVGAVIID----FPTAWA-SSDDEYFA-------- 179
Query: 200 FVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP 259
EL+ + D I F D R +A + +H+H E
Sbjct: 180 ----RAGELHDQWRD--DPLISTAFAPHAPYTVNDANFERVRMLADQLDMPVHLHTHETA 233
Query: 260 YENQVVMDTRKVDHG--TVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPA 317
E + +G + LD++ + + L++ H + EI L + GV V HCP
Sbjct: 234 QEVADSVAQ----YGQRPLARLDRLGLVNDRLIAVHMTQLTEAEIHLCAERGVSVVHCPE 289
Query: 318 SAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTD 376
S +++ GF P + A + +++GTDG SNN + + E A+++ K D
Sbjct: 290 SNLKLASGFCPACALQRASVNLAIGTDGCASNNDLDMFSENRTAAILAKAV------AND 343
Query: 377 PAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVY 436
AL A T LR AT+ GA+++ + + IGS+E GK+AD+V VD + P+H ++ L+Y
Sbjct: 344 ATALDAATTLRAATLGGARALGFGDRIGSIEVGKQADLVCVDLSALETQPLHHVLSQLIY 403
Query: 437 CMRTENVVSVMCNGQWVMKNKKIL 460
V V G+ + ++++
Sbjct: 404 AAGRHQVTDVWIAGKPKLVQRELI 427
|
| >4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa} Length = 451 | Back alignment and structure |
|---|
Score = 458 bits (1181), Expect = e-159
Identities = 127/444 (28%), Positives = 207/444 (46%), Gaps = 37/444 (8%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
++L IV ++ V R+ + + +I + ++ A +I +L +L P
Sbjct: 10 LLLLPTWIVPVEPAGVVLRDHALGIRDGQIALVAPREQAMRHG---ATEIRELPGMLLAP 66
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDS-YISTLLCGIELIHSGV 139
G VN H H++ L +G+ADD+ LMTWL D IWP E ED T L E + G+
Sbjct: 67 GLVNAHGHSAMSLFRGLADDLPLMTWLQDHIWPAEGQWVSEDFIRDGTELAIAEQVKGGI 126
Query: 140 TCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFN 199
TCF++ + + V G+RA + +D P A R + + I+
Sbjct: 127 TCFSDMYF-YPQAICGVVHDSGVRAQVAIPVLD----FPIPGA-RDSAEAIR-------- 172
Query: 200 FVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIP 259
L+ H RIRI FG +D L + + E I MHV E
Sbjct: 173 ----QGMALFDDLKH--HPRIRIAFGPHAPYTVSDDKLEQILVLTEELDASIQMHVHETA 226
Query: 260 YENQVVMDTRKVDHG--TVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPA 317
+E + M+ +G + L ++ L + H V++ ++ +L V HCP
Sbjct: 227 FEVEQAMER----NGERPLARLHRLGLLGPRFQAVHMTQVDNDDLAMLVETNSSVIHCPE 282
Query: 318 SAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTD 376
S +++ GF P++++ A + V++GTDGA SNN + ++ E A+L+ K
Sbjct: 283 SNLKLASGFCPVEKLWQAGVNVAIGTDGAASNNDLDLLGETRTAALLAKAV------YGQ 336
Query: 377 PAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVY 436
AL A LRMAT+NGA+++ + IGSLEAGK AD+V D PV+D ++ L+Y
Sbjct: 337 ATALDAHRALRMATLNGARALGLERLIGSLEAGKAADLVAFDLSGLAQQPVYDPVSQLIY 396
Query: 437 CMRTENVVSVMCNGQWVMKNKKIL 460
+ V V G+ ++ + ++L
Sbjct: 397 ASGRDCVRHVWVGGRQLLDDGRLL 420
|
| >1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A Length = 406 | Back alignment and structure |
|---|
Score = 448 bits (1156), Expect = e-156
Identities = 113/441 (25%), Positives = 191/441 (43%), Gaps = 57/441 (12%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
MI+ N +I+ G V + IK + Q +DL ++++P
Sbjct: 1 MIIGNCLILKDFS--SEPFWGAVEIENGTIKRVLQGE---------VKVDLDLSGKLVMP 49
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
NTH H L +G+A+D+ WL ++ P E +TE+ +Y T+L +E+ G+
Sbjct: 50 ALFNTHTHAPMTLLRGVAEDLSFEEWLFSKVLPIEDRLTEKMAYYGTILAQMEMARHGIA 109
Query: 141 CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNF 200
F + H +AKAV G+RA L + +D DD + + ++
Sbjct: 110 GFVDMYF-HEEWIAKAVRDFGMRALLTRGLVDSN-----------GDDGGRLEENLKL-- 155
Query: 201 VSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 260
+ +GRI + FG ++ L D A+ + +H+ E
Sbjct: 156 ---------YNEWNGFEGRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAPVTIHLYETSK 206
Query: 261 ENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAM 320
E + + I + ++AH V + G+L VSH PAS +
Sbjct: 207 EEY-----------DLEDILNIGLKEVKTIAAHCVHLPERYFGVLKDIPFFVSHNPASNL 255
Query: 321 RM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAA 379
++ G AP++ M+ + V+LGTDGA SNN +++ EM LASL+ K + +P
Sbjct: 256 KLGNGIAPVQRMIEHGMKVTLGTDGAASNNSLNLFFEMRLASLLQKAQ--------NPRN 307
Query: 380 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMR 439
L T L+M T +GA+++ + G +E G AD+VV+D M PV + LV+
Sbjct: 308 LDVNTCLKMVTYDGAQAMGF--KSGKIEEGWNADLVVIDLDLPEMFPVQNIKNHLVHAFS 365
Query: 440 TENVVSVMCNGQWVMKNKKIL 460
V + M G+W+ + +
Sbjct: 366 G-EVFATMVAGKWIYFDGEYP 385
|
| >3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A {Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A* Length = 456 | Back alignment and structure |
|---|
Score = 447 bits (1153), Expect = e-155
Identities = 108/462 (23%), Positives = 183/462 (39%), Gaps = 47/462 (10%)
Query: 21 MIL-HNA-VIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQIL 78
MIL ++T D + R + + + +I A+G+ + ID + I
Sbjct: 1 MILIRGLTRVITFDDQERELEDADILIDGPKIVAVGKDLSDRS-----VSRTIDGRGMIA 55
Query: 79 LPGFVNTHVHTSQQLAKGIA--DDVDLMTWLHDRI-----WPYESNMTEEDSYISTLLCG 131
LPG +N+H H + + I + V + +WL + W + +
Sbjct: 56 LPGLINSHQHLYEGAMRAIPQLERVTMASWLEGVLTRSAGWWRDGKFGPDVIREVARAVL 115
Query: 132 IELIHSGVTCFAE--------AGGQHVSEMAKAVELLGLRACLVQSTMDCGE---GLPAS 180
+E + G+T A+ ++ +A LG+R +S+M G+ G
Sbjct: 116 LESLLGGITTVADQHLFFPGATADSYIDATIEAATDLGIRFHAARSSMTLGKSEGGFCDD 175
Query: 181 WAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAA-DGRIRIWFGIRQIMNATDRLLLE 239
V D +Q L ++H G +RI G + L
Sbjct: 176 LFVEPVDRVVQ------------HCLGLIDQYHEPEPFGMVRIALGPCGVPYDKPELFEA 223
Query: 240 TRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH 299
MA ++ +H H E FL+K + + + AH V
Sbjct: 224 FAQMAADYDVRLHTHFYEPLDAGMSD---HLYGMTPWRFLEKHGWASDRVWLAHAVVPPR 280
Query: 300 TEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMY 358
EI + AGV ++H A +RM G API+E L A I V GT G+ SN+ +++ ++
Sbjct: 281 EEIPEFADAGVAIAHLIAPDLRMGWGLAPIREYLDAGITVGFGTTGSASNDGGNLLGDLR 340
Query: 359 LASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVD 418
LA+L ++ + L A +LRMAT A+ L D+G LE G+ AD+
Sbjct: 341 LAALAHRPA----DPNEPEKWLSARELLRMATRGSAE-CLGRPDLGVLEEGRAADIACWR 395
Query: 419 PFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKIL 460
V VHD L+ ++ V+ NGQ +++N++ +
Sbjct: 396 LDGVDRVGVHDPAIGLIMTGLSDRASLVVVNGQVLVENERPV 437
|
| >2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II, amidohydrolase, sargasso SEA, enviro sample, structural genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9 Length = 492 | Back alignment and structure |
|---|
Score = 441 bits (1136), Expect = e-152
Identities = 109/482 (22%), Positives = 191/482 (39%), Gaps = 55/482 (11%)
Query: 11 SSGSLGSSSTMILHNAVIVTMDK-----ESRVFRNGGVFVVQDRIKAIGQSADILQQFSQ 65
S + + + ++ NA + + + +V D I AIG A +
Sbjct: 2 SLTTYDTQPSTLIRNAAAIMTGGRGTADDPSRVPGPDIRIVGDTIDAIGALAP------R 55
Query: 66 MADQIIDLQSQILLPGFVNTHVHTSQQLAKGI--ADDVDLMTWLHDRIWPYESNMTEEDS 123
+ I+D ++ P +VNTH H Q L KG D L WL + + + E
Sbjct: 56 PGETIVDATDCVIYPAWVNTHHHLFQSLLKGEPAGLDATLTPWLAATPYRFRALFDERRF 115
Query: 124 YISTLLCGIELIHSGVTCFAE--------AGGQHVSEMAKAVELLGLRACLVQSTMDCGE 175
++ + IEL SG A+ + + + E LGLR L++
Sbjct: 116 RLAARIGLIELARSGCATVADHNYVYYPGMPFDSSAILFEEAEKLGLRFVLLRGGATQTR 175
Query: 176 ----GLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGR-IRIWFGIRQIM 230
LP + T D + + L A++H A+ R+ ++
Sbjct: 176 QLEADLPTALRPETLDAYVA------------DIERLAARYHDASPRAMRRVVMAPTTVL 223
Query: 231 -NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHG--TVTFLDKIEFLQN 287
+ + R + ET +AR +H H++E +G V F + ++L +
Sbjct: 224 YSISPREMRETAAVARRLGLRMHSHLSETVGYQDSAYSM----YGKSPVAFCGEHDWLGS 279
Query: 288 NLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAP 346
++ AH V V+ EI LL++ G V+HCP S R+ G P++EM A + VS+G DGA
Sbjct: 280 DVWYAHLVKVDADEIALLAQTGTGVAHCPQSNGRLGSGICPVREMADAGVPVSIGVDGAA 339
Query: 347 SNNRMSIVDEMYLASLINKGR--------EVFANGTTDPAALPAETVLRMATINGAKSVL 398
SN ++ E+++ L + R + A V+ T GA+ V+
Sbjct: 340 SNEAADMISEVHMTWLAQRARLGMLAQPAYRGGSFEGGAGAASIAEVIHWGTAGGAR-VM 398
Query: 399 WDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKK 458
+++G + G AD+ V +HD V +V+++ G+ V+ +
Sbjct: 399 GLDEVGKVAVGYAADIAVYRLDDPRYFGLHDPAIGPVASGGRPSVMALFSAGKRVVVDDL 458
Query: 459 IL 460
I
Sbjct: 459 IE 460
|
| >3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP} Length = 427 | Back alignment and structure |
|---|
Score = 397 bits (1023), Expect = e-136
Identities = 80/452 (17%), Positives = 156/452 (34%), Gaps = 58/452 (12%)
Query: 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPG 81
I+ I+T + ++ V +I+AI ++++++ + ++ +LLPG
Sbjct: 3 IIKPFAILTPQ---TIIQDKAV-AFDKKIEAIDTVENLIKKYP--NAAVEHDENSLLLPG 56
Query: 82 FVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTC 141
F N H+H K D + WL+ I E + D +I +G T
Sbjct: 57 FANPHLHLEFSANKATLQYGDFIPWLYSVIRHREDLLPLCD-GACLEQTLSSIIQTGTTA 115
Query: 142 FAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFV 201
E +A L+ + T D
Sbjct: 116 IGAIS--SYGEDLQACIDSALKVVYFNEVIGSNA--------ATADVMYA---------- 155
Query: 202 SSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYE 261
S E + + + R + I + L D+A+++ + + +H E E
Sbjct: 156 --SFLERFHQSKKHENERFKAAVAIHSPYSVHYILAKRALDIAKKYGSLVSVHFMESRAE 213
Query: 262 NQVVMDT----------RKVDHGTVTFLDKI--EFLQNNLLSAHTVWVNHTEIGLLSRAG 309
+ + V F + + L H VW N EI ++
Sbjct: 214 REWLDKGSGEFAKFFKEFLNQTRPVNDTKSFLELFKELHTLFVHMVWANEEEIQTIASYN 273
Query: 310 VKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGRE 368
+ HCP S + G ++++ I ++ TDG SN +++ +E+ A ++
Sbjct: 274 AHIIHCPISNRLLGNGVLDLEKI--KSIPYAIATDGLSSNYSLNMYEELKAALFVHPN-- 329
Query: 369 VFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVH 428
A A+ ++ AT G ++ + + G + GK ADM ++D + V
Sbjct: 330 -------KEATTFAKELIIRATKAGYDALGF--EGGEIAVGKDADMQLID-LPEGLTNVE 379
Query: 429 DRITSLVYCMRTENVVSVMCNGQWVMKNKKIL 460
D ++ T V G+ ++ + L
Sbjct: 380 DLYLHVILH--TTKPKKVYIQGEEHVREAENL 409
|
| >2i9u_A Cytosine/guanine deaminase related protein; protein structure initiative II (PSI-II), amidohydrol guanine deaminase; HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP: b.92.1.4 c.1.9.9 Length = 439 | Back alignment and structure |
|---|
Score = 319 bits (821), Expect = e-105
Identities = 89/446 (19%), Positives = 171/446 (38%), Gaps = 35/446 (7%)
Query: 22 ILHNAVIVTMDKES-RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
I +I T + + ++ + V+ +I ++ + + + IID ++ I++P
Sbjct: 12 IFKGNLIFTKTSDKFTIMKDSYIVVIDGKIASVSSNLPDKYK----GNPIIDFRNNIIIP 67
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEED-SYISTLLCGIELIHSGV 139
G + H H SQ GI D +L+ WL++ +P E+ D + + +LI +G
Sbjct: 68 GMNDLHAHASQYKNLGIGMDKELLPWLNNYTFPEEAKFLNVDYAKKTYGRLIKDLIKNGT 127
Query: 140 TCFAEAGGQH---VSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSI 196
T A H E+ + G+ A + + MD P + D+
Sbjct: 128 TRVALFATLHKDSTIELFNMLIKSGIGAYVGKVNMDYNC--PDYLT-ENYITSLN-DT-- 181
Query: 197 SFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVA 256
+E+ K+ ++ R + + ++ L+ ++ +++ + H++
Sbjct: 182 ---------EEIILKYKD-KSNIVKPIITPRFVPSCSNELMDGLGKLSYKYRLPVQSHLS 231
Query: 257 EIPYENQVVMDTRKVDHGTVTFLDKIEFLQNN-LLSAHTVWVNHTEIGLLSRAGVKVSHC 315
E E VV K + DK N L AH + + EI L+ R V + HC
Sbjct: 232 ENLDEIAVVKSLHKKSNFYGEVYDKFGLFGNTPTLMAHCIHSSKEEINLIKRNNVTIVHC 291
Query: 316 PASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGT 374
P S + G P+++ L+ I V LG+D + + S+ + A +K + +
Sbjct: 292 PTSNFNLGSGMMPVRKYLNLGINVVLGSDISAGHT-CSLFKVIAYAIQNSKIKWQESGK- 349
Query: 375 TDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDP--FSWPMVPVHDRIT 432
L MAT G +GS E G D +V++ + +R+
Sbjct: 350 -KDMFLSTSEAFYMATKKGGSFF---GKVGSFEEGYDFDALVINDSNLYPEDYDLTERLE 405
Query: 433 SLVYCMRTENVVSVMCNGQWVMKNKK 458
+Y N++ G + K
Sbjct: 406 RFIYLGDDRNIMKRYVCGNEIFGPKF 431
|
| >3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family, N-formimino-L-glutamate iminohydrolas guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas aeruginosa} PDB: 3mdw_A* Length = 453 | Back alignment and structure |
|---|
Score = 313 bits (803), Expect = e-102
Identities = 76/460 (16%), Positives = 152/460 (33%), Gaps = 52/460 (11%)
Query: 30 TMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHT 89
+ E + G V+ I A G A+I + +LPG N H H
Sbjct: 3 AIFAERALLPEGWARNVRFEISADGVLAEIRPDA---NADGAERLGGAVLPGMPNLHSHA 59
Query: 90 SQQLAKGIAD-----DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAE 144
Q+ G+A+ + TW + ++ + ++ E + IE++ +G T AE
Sbjct: 60 FQRAMAGLAEVAGNPNDSFWTWR-ELMYRMVARLSPEQIEVIACQLYIEMLKAGYTAVAE 118
Query: 145 --------------AGGQHVSEMAKAVELLGLRACLVQSTMDCGE--GLPASWAVRTTDD 188
+ +++A G+ L+ G PAS R +
Sbjct: 119 FHYVHHDLDGRSYADPAELSLRISRAASAAGIGLTLLPVLYSHAGFGGQPASEGQRRFIN 178
Query: 189 CIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFK 248
+ + + L + + T + + +
Sbjct: 179 GSE-----------AYLELLQRLRAPLEAAGHSLGLCFHSLRAVTPQQIATVLAAGHD-D 226
Query: 249 TGIHMHVAEIPYENQVVMDTRKVDHGT--VTFLDKIEFLQNNLLSAHTVWVNHTEIGLLS 306
+H+H+AE E G + +L + + H + E+ ++
Sbjct: 227 LPVHIHIAEQQKEVDDCQAW----SGRRPLQWLYENVAVDQRWCLVHATHADPAEVAAMA 282
Query: 307 RAGVKVSHCPASAMRML--GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLIN 364
R+G C ++ L G P + L + +G+D S + + + + +
Sbjct: 283 RSGAVAGLCLSTEAN-LGDGIFPATDFLAQGGRLGIGSDSHVSLSVVEELRWLEYGQRLR 341
Query: 365 KGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPM 424
+ D + T+ A GA+ L IGSL G++AD++V+D +
Sbjct: 342 DRKRNRL--YRDDQPMIGRTLYDAALAGGAQ-ALGQ-PIGSLAVGRRADLLVLDGNDPYL 397
Query: 425 VPVHDR--ITSLVYCMRTENVVSVMCNGQWVMKNKKILLL 462
+ ++ V VM G+WV+++ +
Sbjct: 398 ASAEGDALLNRWLFAGGDRQVRDVMVAGRWVVRDGRHAGE 437
|
| >4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A {Homo sapiens} PDB: 2uz9_A* 3e0l_A Length = 476 | Back alignment and structure |
|---|
Score = 312 bits (801), Expect = e-102
Identities = 91/465 (19%), Positives = 182/465 (39%), Gaps = 44/465 (9%)
Query: 17 SSSTMILHNAVIVTMDKES-RVFRNGGVFVVQDR-IKAIGQSAD---ILQQFSQMADQII 71
I + + V R+ + V I + +++ + +++ +I
Sbjct: 29 PPLAHIFRGTFVHSTWTCPMEVLRDHLLGVSDSGKIVFLEEASQQEKLAKEWCFKPCEIR 88
Query: 72 DL-QSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEED-SYISTLL 129
+L + +PG V+TH+H SQ G + D+ L+ WL +P E D +
Sbjct: 89 ELSHHEFFMPGLVDTHIHASQYSFAGSSIDLPLLEWLTKYTFPAEHRFQNIDFAEEVYTR 148
Query: 130 CGIELIHSGVTC---FAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTT 186
+ +G T FA +A + G RA + + MD + P TT
Sbjct: 149 VVRRTLKNGTTTACYFATIHTDSSLLLADITDKFGQRAFVGKVCMDLNDTFPE--YKETT 206
Query: 187 DDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMARE 246
++ I+ + ++ R++ R ++ ++ L+ E ++A+
Sbjct: 207 EESIK------------ETERFVSEMLQKNYSRVKPIVTPRFSLSCSETLMGELGNIAKT 254
Query: 247 FKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLS 306
I H++E E + V + + DK L N + AH +++ E+ +
Sbjct: 255 RDLHIQSHISENRDEVEAVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLSAEELNVFH 314
Query: 307 RAGVKVSHCPASAMRML-GFAPIKEMLHADICVSLGTD--GAPSNNRMSIVDEMYLASLI 363
G ++HCP S + + GF + E+L ++ + LGTD G S + + + + S I
Sbjct: 315 ERGASIAHCPNSNLSLSSGFLNVLEVLKHEVKIGLGTDVAGGYSYSMLDAIRRAVMVSNI 374
Query: 364 NKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDP---- 419
+ +L + V R+AT+ G++++ D +IG+ E GK+ D ++++P
Sbjct: 375 LLI------NKVNEKSLTLKEVFRLATLGGSQALGLDGEIGNFEVGKEFDAILINPKASD 428
Query: 420 -------FSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNK 457
+ I +Y N+ V G+ V+
Sbjct: 429 SPIDLFYGDFFGDISEAVIQKFLYLGDDRNIEEVYVGGKQVVPFS 473
|
| >2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural genomics, protein structure initiative; 1.78A {Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16 Length = 420 | Back alignment and structure |
|---|
Score = 305 bits (784), Expect = e-100
Identities = 67/441 (15%), Positives = 128/441 (29%), Gaps = 74/441 (16%)
Query: 3 TNSSGGGSSSGSLGSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQ 62
T S + + + + +L V+ T GGV VV + + A G ++ +Q
Sbjct: 21 TFSEATTPDALTPDAHTPRLLTCDVLYTGM--GGAQSPGGVVVVGETVAAAGHPDELRRQ 78
Query: 63 FSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEED 122
+ + ++ P VN H H + A + W+ + +
Sbjct: 79 Y---PHAAEERAGAVIAPPPVNAHTHLDMSAYEFQA--LPYFQWIPEVVIRGRHLRGVA- 132
Query: 123 SYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWA 182
+ L G + M + L L ++
Sbjct: 133 ---AAQAGADTLTRLGAGGVGDIVW-APEVMDALLAREDLSGTLYFEVLN--------PF 180
Query: 183 VRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRD 242
D+ + + + +R+ + RL+ D
Sbjct: 181 PDKADEVFA------------AARTHLERWRRLERPGLRLGLSPHTPFTVSHRLMRLLSD 228
Query: 243 MAREFKTGIHMHVAEIPYENQVVMDTRKVDHGT------------------------VTF 278
A + +HVAE P E ++ V +
Sbjct: 229 YAAGEGLPLQIHVAEHPTELEMFRTGGGPLWDNRMPALYPHTLAEVIGREPGPDLTPVRY 288
Query: 279 LDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADIC 337
LD++ L H V V +I ++RAG V CP S + G A +
Sbjct: 289 LDELGVLAARPTLVHMVNVTPDDIARVARAGCAVVTCPRSNHHLECGTFDWPAFAAAGVE 348
Query: 338 VSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAK-- 395
V+LGTD S +++ +E+ A + L ++R A G +
Sbjct: 349 VALGTDSVASGETLNVREEVTFARQLYP-------------GLDPRVLVRAAVKGGQRVV 395
Query: 396 --SVLWDNDIGSLEAGKKADM 414
+ + + G + ++
Sbjct: 396 GGRTPFLRRGETWQEGFRWEL 416
|
| >2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9 Length = 475 | Back alignment and structure |
|---|
Score = 305 bits (782), Expect = 4e-99
Identities = 85/467 (18%), Positives = 164/467 (35%), Gaps = 57/467 (12%)
Query: 28 IVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHV 87
I +R ++G + V IKA G I +I ++ +I++PGF++ H+
Sbjct: 23 IGNEQAAARFHQDGLMVVTDGVIKAFGPYEKIAAAHP--GVEITHIKDRIIVPGFIDGHI 80
Query: 88 HTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEED-SYISTLLCGIELIHSGVTCFAEAG 146
H Q G + L+ WL I+P E + + + L+ +G T
Sbjct: 81 HLPQTRVLGAYGE-QLLPWLQKSIYPEEIKYKDRNYAREGVKRFLDALLAAGTTTCQAFT 139
Query: 147 ---GQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSS 203
E+ + +R + +D PA + T ++ +
Sbjct: 140 SSSPVATEELFEEASRRNMRVIAGLTGIDRN--APAEFI-DTPENFYR------------ 184
Query: 204 SQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFK-TGIHMHVAEIPYEN 262
K L A++H GR R A+ LL + + E ++ H++E P E
Sbjct: 185 DSKRLIAQYHD--KGRNLYAITPRFAFGASPELLKACQRLKHEHPDCWVNTHISENPAEC 242
Query: 263 QVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM 322
V+ + +K + + H V++++ E +S+ G V CP S + +
Sbjct: 243 SGVLVEHPDCQDYLGVYEKFDLVGPKFSGGHGVYLSNNEFRRMSKKGAAVVFCPCSNLFL 302
Query: 323 L-GFAPIKEMLHAD--ICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTT---- 375
G + + + +S GTD N S++ + A + +G+
Sbjct: 303 GSGLFRLGRATDPEHRVKMSFGTDVGGGNR-FSMISVLDDAYKVGMCNNTLLDGSIDPSR 361
Query: 376 ------DPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMV---- 425
+ L T+ GA+ + D+ +G+ E GK+AD V +DP +
Sbjct: 362 KDLAEAERNKLSPYRGFWSVTLGGAEGLYIDDKLGNFEPGKEADFVALDPNGGQLAQPWH 421
Query: 426 --------------PVHDRITSLVYCMRTENVVSVMCNGQWVMKNKK 458
+ +++ V G+ + K +
Sbjct: 422 QSLIADGAGPRTVDEAASMLFAVMMVGDDRCVDETWVMGKRLYKKSE 468
|
| >4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Brucella melitensis biovar abortus} Length = 458 | Back alignment and structure |
|---|
Score = 302 bits (775), Expect = 3e-98
Identities = 75/477 (15%), Positives = 139/477 (29%), Gaps = 64/477 (13%)
Query: 13 GSLGSSSTM-ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQII 71
GS+ S+ +H + D N + + I +I
Sbjct: 3 GSMSDQSSQHFIHARQALLPD---GWAENVRIGIAGGVICSIETGV---------LAGPD 50
Query: 72 DLQSQILLPGFVNTHVHTSQQLAKGIADDV-----DLMTWLHDRIWPYESNMTEEDSYIS 126
D + +++ G N H H Q G+A+ +W ++ + MT E +
Sbjct: 51 DERQSVVVAGMANLHSHAFQYGMAGLAERRGPSADSFWSWRE-IMYKFALTMTPEQAEAV 109
Query: 127 TLLCGIELIHSGVTCFAE--------------AGGQHVSEMAKAVELLGLRACLVQSTMD 172
L ++++ +G T E + +A A G+ L+
Sbjct: 110 ALRLYVDMLEAGFTRVGEFHYLHHDCDGTPYANLSEMADRIAAAATTAGMGLTLLPVFYA 169
Query: 173 CGEGLPASWAVRTTDDCIQ-PDSSISFNFVSSSQKELYAKHHHAADG--RIRIWFGIRQI 229
G + A I P+ L +G + +
Sbjct: 170 HS-GFGGAAANEGQRRFINDPERFA----------RLIEGCRKTLEGFEGAVLGVAPHSL 218
Query: 230 MNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGT--VTFLDKIEFLQN 287
T L + + +H+HVAE E + + G V +L + +
Sbjct: 219 RAVTPDELDSVTQLLPD--APVHIHVAEQVKEVEDCIAW----SGKRPVEWLLDHQDVTA 272
Query: 288 NLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRML--GFAPIKEMLHADICVSLGTDGA 345
H ++ E +++AG CP + L G E A +G+D
Sbjct: 273 RWCLIHATHMSDEETKHMAKAGAIAGLCPVTEAN-LGDGTFNATEFAAAGGKFGIGSDSN 331
Query: 346 PSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGS 405
I DE+ + N + A + G ++
Sbjct: 332 VLIG---IGDELRQLEYSQRLYHRARNVLAANEGSTGRALFDGAVLGGNIAMGR--PEDG 386
Query: 406 LEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLL 462
L+ G AD V +D P + ++ R +V V G ++ + L
Sbjct: 387 LKKGASADFVSLDVERLPHAKGDVVLDGWIFAGRA-HVCDVWVRGVKQVEGGRHRLR 442
|
| >2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A Length = 421 | Back alignment and structure |
|---|
Score = 233 bits (597), Expect = 3e-72
Identities = 80/471 (16%), Positives = 149/471 (31%), Gaps = 84/471 (17%)
Query: 19 STMILHNAVIVTMDKES----------RVFRNGGVFVVQDRIKAIGQSADILQQFSQMAD 68
T++++ ++TM+ V + V + + +I GQ AD
Sbjct: 6 DTILINIGQLLTMESSGPRAGKSMQDLHVIEDAVVGIHEQKIVFAGQKGAEAGYE---AD 62
Query: 69 QIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYE----------SNM 118
+IID +++ PG V+ H H ++ ++ L + I
Sbjct: 63 EIIDCSGRLVTPGLVDPHTHLVFGGSREKEMNLKLQGISYLDILAQGGGILSTVKDTRAA 122
Query: 119 TEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLP 178
+EE+ ++ G T G + + + +L + +D
Sbjct: 123 SEEELLQKAHFHLQRMLSYGTTTAEVKSGYGLEKETELKQLRVAKKLHESQPVDLVSTFM 182
Query: 179 ASWAV-----RTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNAT 233
+ A+ DD + L + F + +
Sbjct: 183 GAHAIPPEYQNDPDDFLD------------QMLSLLPEIKEQELASFADIFTETGVFTVS 230
Query: 234 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAH 293
+ A E G+ +H EI + V+ H
Sbjct: 231 QSRRYLQK--AAEAGFGLKIHADEIDPLGGAEL---AGKLKAVSA-------------DH 272
Query: 294 TVWVNHTEIGLLSRAGVKVSHCPASAM--RMLGFAPIKEMLHADICVSLGTDGAPSNNRM 351
V + I L+ AG P + +A + M+ +CVSL TD P ++
Sbjct: 273 LVGTSDEGIKKLAEAGTIAVLLPGTTFYLGKSTYARARAMIDEGVCVSLATDFNPGSSPT 332
Query: 352 -SIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGK 410
+I M +A+L K + AE + T+N A ++ + G L+AG+
Sbjct: 333 ENIQLIMSIAALHLK--------------MTAEEIWHAVTVNAAYAIGKGEEAGQLKAGR 378
Query: 411 KADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILL 461
AD+V+ + Y +V VM NG V+ + +L
Sbjct: 379 SADLVIWQA---------PNYMYIPYHYGVNHVHQVMKNGTIVVNREGAIL 420
|
| >2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate, product-bound, structural genomics, protein STRU initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A Length = 419 | Back alignment and structure |
|---|
Score = 202 bits (514), Expect = 3e-60
Identities = 77/469 (16%), Positives = 156/469 (33%), Gaps = 74/469 (15%)
Query: 6 SGGGSSSGSLGSSSTMILHNAVIVTMDKESR---VFRNGGVFVVQDRIKAIGQSADILQQ 62
G S+ G+ ++T + NA + T++ N + V RI G +D+
Sbjct: 2 PGNNSAKGTATGNATALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDD 61
Query: 63 FSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYE------- 115
S AD+ D + + P ++ H H + + ++ L ++ I
Sbjct: 62 LST-ADETTDCGGRWITPALIDCHTHLVFGGNRAMEFEMRLNGATYEEIAKAGGGIVSSV 120
Query: 116 ---SNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVS-----EMAKAVELLGLRACLV 167
+++E L L+ GV+ G + +M + L +
Sbjct: 121 RDTRALSDEVLVAQALPRLDTLLSEGVSTIEIKSGYGLDIETELKMLRVARRLETLRPVR 180
Query: 168 QSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIR 227
T + D +++ A+G G
Sbjct: 181 IVTSYLAAHATPADYKGRNAD-----------YITDVVLPGL--EKAHAEGLADAVDGFC 227
Query: 228 QIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQN 287
+ + + + + A++ + +H ++ + G N
Sbjct: 228 EGIAFSVKEIDRVFAAAQQRGLPVKLHAEQLS------------NLGGAELAASY----N 271
Query: 288 NLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAM--RMLGFAPIKEMLHADICVSLGTDGA 345
L + H +++ T L++AG P + R P++ + A ++L TD
Sbjct: 272 ALSADHLEYLDETGAKALAKAGTVAVLLPGAFYALREKQLPPVQALRDAGAEIALATDCN 331
Query: 346 PSNNRM-SIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIG 404
P + + S++ M + + + + + E L T N AK++ + G
Sbjct: 332 PGTSPLTSLLLTMNMGATLFR--------------MTVEECLTATTRNAAKALGLLAETG 377
Query: 405 SLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWV 453
+LEAGK AD + D +R LVY + + + + GQ V
Sbjct: 378 TLEAGKSADFAIWDI---------ERPAELVYRIGFNPLHARIFKGQKV 417
|
| >2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo 4YL)-propionic acid, PSI-2 community, structural genomics, structure initiative; HET: DI6; 1.97A {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A* Length = 416 | Back alignment and structure |
|---|
Score = 156 bits (395), Expect = 5e-43
Identities = 66/467 (14%), Positives = 142/467 (30%), Gaps = 80/467 (17%)
Query: 18 SSTMILHNAVIVTMDKESR---VFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQ 74
+ + N T+ + + + V + RI A+ D+ + D++
Sbjct: 4 NCERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKGPY---PAHWQDMK 60
Query: 75 SQILLPGFVNTHVHTSQ---------QLAKGI--ADDVDLMTWLHDRIWPYESNMTEEDS 123
+++ PG ++ H H KG+ A+ + +E+
Sbjct: 61 GKLVTPGLIDCHTHLIFAGSRAEEFELRQKGVPYAEIARKGGGII-STVRATRAASEDQL 119
Query: 124 YISTLLCGIELIHSGVTCFAEAGGQHVS-----EMAKAVELLGLRACLVQSTMDCGEGLP 178
+ L LI GVT G ++ +M + LG + T
Sbjct: 120 FELALPRVKSLIREGVTTVEIKSGYGLTLEDELKMLRVARRLGEALPIRVKTTLLAAHAV 179
Query: 179 ASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLL 238
D +V + +E+ A F + + +
Sbjct: 180 PPEYRDDPDS-----------WVETICQEIIPAAAEAGLADAVDVFC--EHIGFSLAQTE 226
Query: 239 ETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSA-HTVWV 297
+ A ++ + H+ ++ T + G LS H ++
Sbjct: 227 QVYLAADQYGLAVKGHMDQLSNLG---GSTLAANFG--------------ALSVDHLEYL 269
Query: 298 NHTEIGLLSRAGVKVSHCPASAMRM--LGFAPIKEMLHADICVSLGTDGAPSNNRM-SIV 354
+ I L+ GV + P + + P+ + A + +++ +D P + S+
Sbjct: 270 DPEGIQALAHRGVVATLLPTAFYFLKETKLPPVVALRKAGVPMAVSSDINPGTAPIVSLR 329
Query: 355 DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADM 414
M +A + L + T + A+++ +G L G AD
Sbjct: 330 MAMNMACTLFG--------------LTPVEAMAGVTRHAARALGEQEQLGQLRVGMLADF 375
Query: 415 VVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILL 461
+V + L Y + + +VS + NG+ + +
Sbjct: 376 LVWNC---------GHPAELSYLIGVDQLVSRVVNGEETLHGEGHHH 413
|
| >2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP} Length = 403 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 2e-40
Identities = 69/450 (15%), Positives = 138/450 (30%), Gaps = 64/450 (14%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ NA + D + +V DRI I + ID + ++ P
Sbjct: 7 LIIRNAYLSEKDSVYDIG------IVGDRIIKIEAKIE------GTVKDEIDAKGNLVSP 54
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIW------PYESNMTEEDSYISTLLCGIEL 134
GFV+ H H + + + R Y N T E+ +
Sbjct: 55 GFVDAHTHMDKSFTSTGERLPKFWSRPYTRDAAIEDGLKYYKNATHEEIKRHVIEHAHMQ 114
Query: 135 IHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDS 194
+ G HV ++ + + A L + E L ++ S
Sbjct: 115 VLHGTLYTRT----HV-DVDSVAKTKAVEAVL-----EAKEELKDLIDIQVVA---FAQS 161
Query: 195 SISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMH 254
+ E + + N + L +A+E+ I H
Sbjct: 162 GF----FVDLESESLIRKSLDMGCDLVGGVDPATRENNVEGSLDLCFKLAKEYDVDIDYH 217
Query: 255 VAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 314
+ +I ++ + ++ + I L +G+K
Sbjct: 218 IHDIGTVGVYSINRLAQKTIENGYKGRVTTSHAWCFADAPSEWLDEAIPLYKDSGMKFVT 277
Query: 315 CPASAMRMLGFAPIKEMLHADICVSLGTDGAPSNN----RMSIVDEMYLASLINKGREVF 370
C +S P+ ++L A I + +D +V + + +
Sbjct: 278 CFSSTP---PTMPVIKLLEAGINLGCASDNIRDFWVPFGNGDMVQGALIETQRLE----- 329
Query: 371 ANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDR 430
+ +M T GA+ + + + G +E GKKAD+VV++ S +
Sbjct: 330 -----LKTNRDLGLIWKMITSEGARVLGIEKNYG-IEVGKKADLVVLNSLSPQWAII--- 380
Query: 431 ITSLVYCMRTENVVSVMCNGQWVMKNKKIL 460
+ V+ NG+ ++K++ I+
Sbjct: 381 --------DQAKRLCVIKNGRIIVKDEVIV 402
|
| >1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation change, D314G mutant, hydrolase; 1.12A {Escherichia coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A 1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A 3g77_A Length = 430 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 1e-38
Identities = 66/473 (13%), Positives = 147/473 (31%), Gaps = 88/473 (18%)
Query: 13 GSLGSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIID 72
S+ +++ + NA + + ++ G +I AI + ++ + +D
Sbjct: 2 SSMANNALQTIINARLPGEEGLWQIHLQDG------KISAIDAQSGVMPI----TENSLD 51
Query: 73 LQSQILLPGFVNTHVHTSQQLAKGIAD---DVDLMTWLHDRIWPYESNMTEEDSYISTLL 129
+ +++P FV H+H G + L + +R ++ +T +D
Sbjct: 52 AEQGLVIPPFVEPHIHLDTTQTAGQPNWNQSGTLFEGI-ERWAERKALLTHDDVKQRAWQ 110
Query: 130 CGIELIHSGVTCFAEAGGQHV---SEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTT 186
I +G+ HV A++ + V +D + +
Sbjct: 111 TLKWQIANGIQHVRT----HVDVSDATLTALKAMLEVKQEVAPWIDLQIVAFPQEGILSY 166
Query: 187 DDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMARE 246
+ + L + + L +T +A++
Sbjct: 167 PNG----------------EALLEEALRLGADVVGAIPHFEFTREYGVESLHKTFALAQK 210
Query: 247 FKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE----- 301
+ I +H EI E ++ TV L E + + ++HT ++
Sbjct: 211 YDRLIDVHCDEIDDEQSRFVE-------TVAALAHHEGMGARVTASHTTAMHSYNGAYTS 263
Query: 302 --IGLLSRAGVKVSHCPASAMRML----------GFAPIKEMLHADICVSLGTDGAP--- 346
LL +G+ P + + G +KEML + I V G DG
Sbjct: 264 RLFRLLKMSGINFVANPLVNIHLQGRFDTYPKRRGITRVKEMLESGINVCFGHDGVFDPW 323
Query: 347 -SNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGS 405
+++ +++ + + L + T + A+ L D G
Sbjct: 324 YPLGTANMLQVLHMGLHVCQLM----------GYGQINDGLNLITHHSAR-TLNLQDYG- 371
Query: 406 LEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKK 458
+ AG A+++++ + R V + G+ + +
Sbjct: 372 IAAGNSANLIILPAENGFDALR-----------RQVPVRYSVRGGKVIASTQP 413
|
| >2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrola 9244B, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens} Length = 417 | Back alignment and structure |
|---|
Score = 122 bits (306), Expect = 1e-30
Identities = 70/445 (15%), Positives = 139/445 (31%), Gaps = 68/445 (15%)
Query: 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQD-RIKAIGQSADILQQFSQMADQIIDLQSQ 76
+ ++L N V + + + + D +I A+G + Q ID +
Sbjct: 14 QAPILLTNVKPVGFG-KGASQSSTDILIGGDGKIAAVGSALQAPA-----DTQRIDAKGA 67
Query: 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIH 136
+ PG+V+ HVH IW ++++ S L+
Sbjct: 68 FISPGWVDLHVH----------------------IWHGGTDISIRPSECGAERGVTTLVD 105
Query: 137 SGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSI 196
+G A G + + E ++A L GL A V D D
Sbjct: 106 AGSAGEANFHGFREYIIEPSRE--RIKAFLNL----GSIGLVACNRVPELRDIKDID--- 156
Query: 197 SFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVA 256
E YA++ G +++ + + + +A+ K + +HV
Sbjct: 157 -----LDRILECYAENSEHIVG-LKVRASHVITGSWGVTPVKLGKKIAKILKVPMMVHVG 210
Query: 257 EIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCP 316
E P V++ + G V ++++ ++ + G+++
Sbjct: 211 EPPALYDEVLE--ILGPGDVVTHCFNGKSGSSIMEDEDLFNLAER---CAGEGIRLDIGH 265
Query: 317 ASAMRMLGFAPIKEMLHADIC-VSLGTDGAPSNNRMSIVDEMYLAS-LINKGREVFANGT 374
A F + + + S+ TD + + D S L++
Sbjct: 266 GGASF--SFKVAEAAIARGLLPFSISTDLHGHSMNFPVWDLATTMSKLLSVDM------- 316
Query: 375 TDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSL 434
P E V+ T N A + D L+ G++AD V D + D +
Sbjct: 317 ------PFENVVEAVTRNPASVIRLD-MENRLDVGQRADFTVFDLVDADLEAT-DSNGDV 368
Query: 435 VYCMRTENVVSVMCNGQWVMKNKKI 459
R + + + ++ I
Sbjct: 369 SRLKRLFEPRYAVIGAEAIAASRYI 393
|
| >2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri} Length = 386 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 1e-27
Identities = 62/445 (13%), Positives = 122/445 (27%), Gaps = 76/445 (17%)
Query: 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQI 77
S T+I + IV+ D +S V + + V I AIG + IID
Sbjct: 2 SKTIIKNIGKIVSGDIKSPVLQADTIVVEDGLIAAIGGEELMKDAG---DATIIDAAGST 58
Query: 78 LLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHS 137
+ PG ++THVH + +H
Sbjct: 59 VTPGLLDTHVH-------------------------VSGGDYAPRQKTMDFI--SSALHG 91
Query: 138 GVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSIS 197
GVT AG H + + G +A + + + +P
Sbjct: 92 GVTTMISAGSPH--FPGRPKDAAGTKA--------------LAITLSKSYYNARPAGVKV 135
Query: 198 FNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMN---ATDRLLLETRDMAREFKTGIHMH 254
+K L + + +W + ++ + A + + MH
Sbjct: 136 HGGAVILEKGLTEEDFIEM-KKEGVW-IVGEVGLGTIKNPEDAAPMVEWAHKHGFKVQMH 193
Query: 255 VAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 314
+ V + I T ++ +
Sbjct: 194 TGGTSIPGSSTVTADDVIKTKPDVVSHIN-------GGPTAISVQEVDRIMDETDFAMEI 246
Query: 315 CPASAMR-MLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANG 373
+ A V G D ++ L ++
Sbjct: 247 VQCGNPKIADYVARRAAEKGQLGRVIFGNDAPSGTG---LIPLGILRNMCQIASM----- 298
Query: 374 TTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITS 433
+ + E + MAT N ++ + G + GK+AD++++D P+ V +
Sbjct: 299 ----SDIDPEVAVCMATGNSTA--VYGLNTGVIAPGKEADLIIMDT---PLGSVAEDAMG 349
Query: 434 LVYCMRTENVVSVMCNGQWVMKNKK 458
+ + V+ +G+ V+ +
Sbjct: 350 AIAAGDIPGISVVLIDGEAVVTKSR 374
|
| >3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima} Length = 396 | Back alignment and structure |
|---|
Score = 88.2 bits (218), Expect = 3e-19
Identities = 77/436 (17%), Positives = 133/436 (30%), Gaps = 81/436 (18%)
Query: 15 LGSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQ 74
+ S ++ NA + + G V V +++ +G++ + +I+DL
Sbjct: 1 MSLSVKILFKNATVFPITSRPF---KGDVLVSNGKVEKVGENIEDP------DAEIVDLT 51
Query: 75 SQILLPGFVNTHVH--TSQQLAKGIADDVDLMT-------WLHDRIWPYESNMTEEDSYI 125
+ L PGFV+ H H ++ D + T D P +D I
Sbjct: 52 GKFLFPGFVDAHSHIGLFEEGVGYYYSDGNEATDPVTPHVKALDGFNP-------QDPAI 104
Query: 126 STLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRT 185
L G GVT G + G+G +
Sbjct: 105 ERALAG------GVTSVMIVPGS--------------------ANPVGGQGSVIKFRSII 138
Query: 186 TDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAR 245
++CI D + + K +Y + R+ IR + + +
Sbjct: 139 VEECIVKDPAGLKMAFGENPKRVYGERKQTPSTRMGTAGVIRDYFTKVKNYMKKKELAQK 198
Query: 246 EFKTGIHMHVAEIPYENQVVMDTRKVDH-----GTVTFLDKIEFLQNNLLSAHTVWVNHT 300
E K + E + H +T + E NL+ H
Sbjct: 199 EGKEFTETDLKMEVGEMVLRKKIPARMHAHRADDILTAIRIAEEFGFNLVIEHGTEAYKI 258
Query: 301 EIGLLSRAGVKVSHCPASAMRM------LGFAPIKEMLHADICVSLGTDGAPSNNRMSIV 354
+L+ + V P R L I ++L + ++L D
Sbjct: 259 -SKVLAEKKIPVVVGPLLTFRTKLELKDLTMETIAKLLKDGVLIALMCDHPVIPLE---- 313
Query: 355 DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADM 414
+ T E +L++ T+N AK + ++ IGS+E GK AD+
Sbjct: 314 ---FA---------TVQAATAMRYGAKEEDLLKILTVNPAKILGLEDRIGSIEPGKDADL 361
Query: 415 VVV--DPFSWPMVPVH 428
VV PF V
Sbjct: 362 VVWSGHPFDMKSVVER 377
|
| >3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A Length = 608 | Back alignment and structure |
|---|
Score = 76.6 bits (188), Expect = 5e-15
Identities = 66/442 (14%), Positives = 134/442 (30%), Gaps = 102/442 (23%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+++ +V D + R + +V I ++ + A A Q+ID + P
Sbjct: 37 VLITGGTLV--DVVTGELRPADIGIVGALIASVHEPASRRD-----AAQVIDAGGAYVSP 89
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
G ++TH+H ES+M +Y + ++ T
Sbjct: 90 GLIDTHMH-------------------------IESSMITPAAYAAAVVA-----RGVTT 119
Query: 141 CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNF 200
+ V + + P+ +F
Sbjct: 120 IVWDPHEFGNVHGVDGVRWA--AKAIENLPLRAILLAPSCV------PSAPGLERGGADF 171
Query: 201 VSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 260
++ +L + I G+ + D + + + H +
Sbjct: 172 DAAILADLLSWPEIGGIAEIMNMRGVIE----RDPRMSGIVQAGLAAEKLVCGHARGLKN 227
Query: 261 ENQVVMDTRKV--DHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPAS 318
+ V DH V+ D + L+ L +H +
Sbjct: 228 ADLNAFMAAGVSSDHELVSGEDLMAKLRAGLTIELRGSHDHLLPEFV------------- 274
Query: 319 AMRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPA 378
A + + H V+L TD ++ ++ L ++ R + G
Sbjct: 275 -------AALNTLGHLPQTVTLCTDDVFPDD---LLQGGGLDDVV---RRLVRYG----- 316
Query: 379 ALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCM 438
L E LR AT+N A+ L +D+G + AG++AD+VV + +
Sbjct: 317 -LKPEWALRAATLNAAQ-RLGRSDLGLIAAGRRADIVVFEDLNGF--------------- 359
Query: 439 RTENVVSVMCNGQWVMKNKKIL 460
+ V+ +G+ V + ++L
Sbjct: 360 ---SARHVLASGRAVAEGGRML 378
|
| >2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14 Length = 379 | Back alignment and structure |
|---|
Score = 68.6 bits (167), Expect = 1e-12
Identities = 55/445 (12%), Positives = 113/445 (25%), Gaps = 84/445 (18%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+++ N V + + + +I A+ + + I +
Sbjct: 7 LLIKNGQTVNG-------MPVEIAIKEKKIAAVAATIS-----GSAKETIHLEPGTYVSA 54
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
G+++ HVH + Y + + GVT
Sbjct: 55 GWIDDHVH---------------CFEKMALYYDYPDEIG---------------VKKGVT 84
Query: 141 CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNF 200
+AG + + +L V ++ + + +Q
Sbjct: 85 TVIDAGTTGAENIHEFYDLAQQAKTNVFGLVNISKWGIVAQDELADLSKVQASL------ 138
Query: 201 VSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREF-----KTGIHMHV 255
K+ + G R + ++A++ + + +H+
Sbjct: 139 ----VKKAIQELPDFVVG-----IKARMSRTVIGDNGITPLELAKQIQQENQEIPLMVHI 189
Query: 256 AEIPYENQVVMDT-RKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 314
P ++ K D T F K +N +L T + GV
Sbjct: 190 GSAPPHLDEILALMEKGDVLTHCFNGK----ENGILDQATDKI-KDFAWQAYNKGVVFDI 244
Query: 315 CPASAMRMLGFAPIKEMLHAD-ICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANG 373
+ F + L S+ TD N V L ++ G
Sbjct: 245 GHGTDSF--NFHVAETALREGMKAASISTDIYIRNRENGPV-----YDLATTMEKLRVVG 297
Query: 374 TTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITS 433
++ T A++ G+LE GK AD+ + + + D
Sbjct: 298 Y------DWPEIIEKVTKAPAENFHLT-QKGTLEIGKDADLTIFTIQAEE-KTLTDSNGL 349
Query: 434 LVYCMRTENVVSVMCNGQWVMKNKK 458
+ + GQ
Sbjct: 350 TRVAKEQIRPIKTIIGGQIYDNEGH 374
|
| >3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* Length = 534 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 8e-11
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPG 81
L N I T + G+ + +R+ G S+ L+ +IIDL+ + ++P
Sbjct: 39 ALINGTIYTSFSPVKKVS--GLVISNERVLYAGDSSTALRIAELAGGEIIDLKGKFVMPA 96
Query: 82 FVNTHVH 88
F ++H+H
Sbjct: 97 FFDSHLH 103
|
| >3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* Length = 534 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 4e-07
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 379 ALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVV--DPF 420
+ E L + T A+ L + D+G LE G +A+ +++ DP
Sbjct: 460 RVSREEALHLYTHGSAQVTLAE-DLGKLERGFRAEYIILDRDPL 502
|
| >2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17 Length = 458 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 7e-10
Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 31/129 (24%)
Query: 328 IKEMLHADICVSLGTD-GAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 386
++ A + + +GTD G + + E+ L V G L
Sbjct: 330 ARQAHEAGLMIGVGTDTGMTFVPQYATWRELELL--------VAYAG------FSPAEAL 375
Query: 387 RMATINGAKSVLWDNDIGSLEAGKKADMVVV--DPFSWPMVPVHDRITSLVYCMRTENVV 444
AT A + D + GSLE GK AD++V+ +P D + +L E+
Sbjct: 376 HAATAVNASILGVDAETGSLEVGKSADLLVLNANPL--------DDLRAL------EHPA 421
Query: 445 SVMCNGQWV 453
V+ G V
Sbjct: 422 LVIAAGHPV 430
|
| >2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17 Length = 458 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 6e-09
Identities = 30/131 (22%), Positives = 47/131 (35%), Gaps = 5/131 (3%)
Query: 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQD-RIKAIGQSADILQQFSQMADQIIDLQSQ 76
L +A IVT DK + RN + V D RI+ + S + +D +
Sbjct: 11 VEPFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSIPA---EYHYLDGTGK 67
Query: 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIH 136
I++PG +N H H Q K + + S + + + L+
Sbjct: 68 IVMPGLINAHTHLFSQ-GKPLNPKLATPKGQRMVATFAHSPLGKPYMAATVKHNATTLLE 126
Query: 137 SGVTCFAEAGG 147
SGVT G
Sbjct: 127 SGVTTIRTLGD 137
|
| >2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis} Length = 396 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQI 77
+ ++++ + IVT E+ V +NG V + +I + + +I +
Sbjct: 2 AESLLIKDIAIVT---ENEVIKNGYVGINDGKISTVSTERPKEPY----SKEIQAPADSV 54
Query: 78 LLPGFVNTHVH 88
LLPG ++ H+H
Sbjct: 55 LLPGMIDIHIH 65
|
| >2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis} Length = 396 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 2e-08
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 20/79 (25%)
Query: 380 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMR 439
+ + + N AK + + GS+ GK AD+V+V
Sbjct: 334 CSWTDIANITSENAAKQLGIFDRKGSVTVGKDADLVIVS--------------------S 373
Query: 440 TENVVSVMCNGQWVMKNKK 458
V+ +C G +K+
Sbjct: 374 DCEVILTICRGNIAFISKE 392
|
| >2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3mkv_A* Length = 426 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 32/133 (24%)
Query: 328 IKEMLHADICVSLGTD-GAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 386
I+ M A + + GTD + S DE + A + PAE V+
Sbjct: 311 IEIMKRAGVKMGFGTDLLGEAQRLQS--DEF----------RILAEVLS-----PAE-VI 352
Query: 387 RMATINGAKSVLWDNDIGSLEAGKKADMVVV--DPFSWPMVPVHDRITSLVYCMRTENVV 444
ATI A+ + + +G + G AD++VV +P + L+ + E++
Sbjct: 353 ASATIVSAEVLGMQDKLGRIVPGAHADVLVVDGNPL--------KSVDCLLG--QGEHIP 402
Query: 445 SVMCNGQWVMKNK 457
VM +G+ + N+
Sbjct: 403 LVMKDGR-LFVNE 414
|
| >2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3mkv_A* Length = 426 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 7e-07
Identities = 19/131 (14%), Positives = 45/131 (34%), Gaps = 22/131 (16%)
Query: 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQ 76
S +T + N ++ D + + + + I+ + +ID++ +
Sbjct: 2 SLTTFLFRNGALLDPDHP-DLLQGFEILIEDGFIREVSDKPIKSS-----NAHVIDVKGK 55
Query: 77 ILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIH 136
++PG ++ HVH A + +L + + + ++
Sbjct: 56 TIMPGLIDLHVHVV-------AIEFNLPRVA---------TLPNVLVTLRAVPIMRAMLR 99
Query: 137 SGVTCFAEAGG 147
G T +AGG
Sbjct: 100 RGFTTVRDAGG 110
|
| >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} Length = 81 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 5e-09
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQD-RIKAIGQSADILQQFSQMADQIIDLQSQILL 79
MIL+N I T+D + D I A+G + + IDL+ + +
Sbjct: 6 MILYNGKITTLDPS---QPEVSAIAITDGLITAVGGDELLNSATE--KTKKIDLKRKRAI 60
Query: 80 PGFVNTHVH 88
PG ++H+H
Sbjct: 61 PGLNDSHIH 69
|
| >3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A* Length = 408 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 9e-09
Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQ 76
+S ++ + + D ++ + + +I IG+ +I +
Sbjct: 4 TSEDFLIKSKGYL--DIQTGEIIKADLLIRNGKIAEIGKINTK-------DATVISIPDL 54
Query: 77 ILLPGFVNTHVH 88
IL+PG +++HVH
Sbjct: 55 ILIPGLMDSHVH 66
|
| >3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A* Length = 408 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 18/82 (21%)
Query: 378 AALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVV--DPFSWPMVPVHDRITSLV 435
+ ++ +TI A + +IG ++ G AD+V V +P I +L
Sbjct: 336 WGMTPLEAIQASTIKTATLFGIE-NIGQIKEGFDADIVGVIENPL--------ANIRTL- 385
Query: 436 YCMRTENVVSVMCNGQWVMKNK 457
E V VM G+ V K +
Sbjct: 386 -----EEVAFVMKEGK-VYKRE 401
|
| >2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18 Length = 418 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 9e-09
Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 35/133 (26%)
Query: 328 IKEMLHADICVSLGTD-GAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 386
++ + ++ GTD G + E ++ G +PA +
Sbjct: 313 FRKAYEKGVKIAFGTDAGVQKHGTNW--KEFVY--MVENG-------------MPAMKAI 355
Query: 387 RMATINGAKSVLWDNDIGSLEAGKKADMVVV--DPFSWPMVPVHDRITSLVYCMRTENVV 444
+ AT+ AK + ++ +GS+E+GK AD++ V +P + I+ L ENV
Sbjct: 356 QSATMETAKLLRIEDKLGSIESGKLADLIAVKGNPI--------EDISVL------ENVD 401
Query: 445 SVMCNGQWVMKNK 457
V+ +G + +
Sbjct: 402 VVIKDGL-LYEGH 413
|
| >2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18 Length = 418 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 14 SLGSSSTMILHNAVIVTMDKESRVFRNGGVFVVQD-RIKAIGQSADILQQFSQMADQIID 72
SL S ++H ++ D +S ++ V+ I I + + ID
Sbjct: 2 SLDVDSKTLIHAGKLI--DGKSDQVQSRISIVIDGNIISDIKKGFISSND----FEDYID 55
Query: 73 LQSQILLPGFVNTHVH 88
L+ +LPG ++ HVH
Sbjct: 56 LRDHTVLPGLMDMHVH 71
|
| >3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A* Length = 423 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 31/129 (24%)
Query: 328 IKEMLHADICVSLGTD-GAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 386
++ +A + + G+D + S E + A L L
Sbjct: 308 LEIYANAGVKMGFGSDLLGEMHAFQS--GEF----------RIRAEV------LGNLEAL 349
Query: 387 RMATINGAKSVLWDNDIGSLEAGKKADMVVV--DPFSWPMVPVHDRITSLVYCMRTENVV 444
R AT A+ V +G + G AD+VV+ +P + I + V
Sbjct: 350 RSATTVAAEIVNMQGQLGVIAVGAIADLVVLDGNPL--------EDIGVVADE--GARVE 399
Query: 445 SVMCNGQWV 453
V+ G V
Sbjct: 400 YVLQRGTLV 408
|
| >3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A* Length = 423 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQ 76
S + +L ++ +++ + + V + +RI + L Q ID++ +
Sbjct: 2 SLTITVLQGGNVLDLERG-VLLEHHHVVIDGERIVEVTDRPVDLP-----NAQAIDVRGK 55
Query: 77 ILLPGFVNTHVH 88
++PGF++ HVH
Sbjct: 56 TVMPGFIDCHVH 67
|
| >3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A* Length = 381 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 2e-08
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 18 SSTM-ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQ 76
S+ M L N I T + V V + D+I+A+ + ++DL
Sbjct: 1 SNAMYALTNCKIYT---GNDVLVKHAVIINGDKIEAVCPIESLPS-----EMNVVDLNGA 52
Query: 77 ILLPGFVNTHVH 88
L PGF++ ++
Sbjct: 53 NLSPGFIDLQLN 64
|
| >3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A* Length = 381 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 20/74 (27%)
Query: 380 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMR 439
+ + LRMAT+ AK++ D +G ++ G A++ V D
Sbjct: 326 IALDEALRMATLYPAKAIGVDEKLGRIKKGMIANLTVFDR-------------DF----- 367
Query: 440 TENVVSVMCNGQWV 453
NV + + NGQ+
Sbjct: 368 --NVKATVVNGQYE 379
|
| >1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A* Length = 382 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 20/74 (27%)
Query: 380 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMR 439
+ + VLRMAT+ A+++ + +G+L AGK A++ P
Sbjct: 326 IALDEVLRMATLYPARAIGVEKRLGTLAAGKVANLTAFTP-------------DF----- 367
Query: 440 TENVVSVMCNGQWV 453
+ + NG V
Sbjct: 368 --KITKTIVNGNEV 379
|
| >1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A* Length = 382 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 2e-07
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 23 LHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGF 82
L I T + V + IK++ A++ + L IL PGF
Sbjct: 4 LTQGRIFT---GHEFLDDHAVVIADGLIKSVCPVAEL-----PPEIEQRSLNGAILSPGF 55
Query: 83 VNTHVH 88
++ ++
Sbjct: 56 IDVQLN 61
|
| >1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A* Length = 390 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 21/81 (25%)
Query: 380 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMR 439
LR T + A + G + G AD++V+ P
Sbjct: 323 FSISDALRPLTSSVAGFLNLT-GKGEILPGNDADLLVMTP-------------------- 361
Query: 440 TENVVSVMCNGQWVMKNKKIL 460
+ V G+ ++K+ K
Sbjct: 362 ELRIEQVYARGKLMVKDGKAC 382
|
| >1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A* Length = 390 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 17 SSSTMIL-HNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQS 75
+++ L A + + V V +I A+ + ++DL
Sbjct: 5 TAAGFTLLQGAHLYAPED----RGICDVLVANGKIIAVA---SNIPSDIVPNCTVVDLSG 57
Query: 76 QILLPGFVNTHVH 88
QIL PGF++ HVH
Sbjct: 58 QILCPGFIDQHVH 70
|
| >1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10 Length = 376 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 21/78 (26%)
Query: 380 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMR 439
+ ++++ N + D D G + G +AD+V++D
Sbjct: 320 CSITELAKVSSYNSCVELGLD-DRGRIAEGTRADLVLLDE-------------------- 358
Query: 440 TENVVSVMCNGQWVMKNK 457
NVV + G+ V +++
Sbjct: 359 DLNVVMTIKEGEVVFRSR 376
|
| >1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10 Length = 376 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 17/79 (21%)
Query: 10 SSSGSLGSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQ 69
S MI+ +IV G V + + +I + ++
Sbjct: 2 GSDKIHHHHHHMIVEKVLIVD---PIDGEFTGDVEIEEGKIVKV--------------EK 44
Query: 70 IIDLQSQILLPGFVNTHVH 88
+ +L+PGFV+ H+H
Sbjct: 45 RECIPRGVLMPGFVDPHIH 63
|
| >2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas gingivalis} Length = 452 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 3e-07
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILL 79
++L NA+I E + F G V + I I + ++ + AD++I+ L
Sbjct: 5 KILLRNALITN---EGKTFP-GSVMIDGAFISRIIEG-ELPADDNLSADEVIECSGLRLF 59
Query: 80 PGFVNTHVH 88
PG ++ VH
Sbjct: 60 PGCIDDQVH 68
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 1e-06
Identities = 54/427 (12%), Positives = 104/427 (24%), Gaps = 146/427 (34%)
Query: 46 VQDRIKAIGQSADILQQFSQMADQII-----DLQSQILLPGFVNTHVHTSQQLAKGI-AD 99
VQD K+I +I D II + L ++ Q+ + +
Sbjct: 38 VQDMPKSILSKEEI--------DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 100 DVDLMTWLHDRIWPYESNMTE--EDSYISTL--LCG------------IELI-------- 135
+ +L E YI L ++
Sbjct: 90 NYK---FLMSP-IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 136 ----HSGVTCFAEAG-GQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWA----VRTT 186
V G G+ +A V + VQ MD W +
Sbjct: 146 ELRPAKNVLIDGVLGSGKTW--VALDV----CLSYKVQCKMDFK----IFWLNLKNCNSP 195
Query: 187 DDCIQPDSSISFNFVS-----SSQKELYAKHHHAADGRIRIWFGIRQ------------- 228
+ ++ + + S H+ +R +
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 229 --IMNATD---RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIE 283
NA + ++LL TR V D T LD
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQ--------------------VTDFLSAATTTHISLDHHS 295
Query: 284 --FLQNNLLSAHTVWVNHTE-----------------IGLLSRAGV------------KV 312
+ + S +++ I R G+ K+
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 313 SHCPASAMRMLGFAPIKEMLHA------DICVSLGT-----DGAPSNNRMSIVDEMYLAS 361
+ S++ +L A ++M + ++ M +V++++ S
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 362 LINKGRE 368
L+ K +
Sbjct: 416 LVEKQPK 422
|
| >3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure initiative, PSI-2, NEW YORK structural genomix research CON nysgxrc; 2.60A {Bacillus halodurans} Length = 448 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ ++ +VT E+ +R V + + AI + I ID L P
Sbjct: 8 LIIRSSTVVT---ETTTYR-ADVAIRNGIVSAITEPGSISSD----DGPAIDGTGLHLFP 59
Query: 81 GFVNTHVH 88
G V+ HVH
Sbjct: 60 GMVDVHVH 67
|
| >1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A* Length = 467 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQIL 78
+I+ N ++ D + + V +IK I ++ +IID + I+
Sbjct: 47 LKLIVKNGYVI--DPSQNLEGEFDILVENGKIKKIDKNIL------VPEAEIIDAKGLIV 98
Query: 79 LPGFVNTHVH 88
PGF++ HVH
Sbjct: 99 CPGFIDIHVH 108
|
| >3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis} Length = 428 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 1e-05
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILL 79
+ N + E + V +I + ++ ++ID+ +++
Sbjct: 2 NYLFKNGRYMN---EEGKIVATDLLVQDGKIAKVAENIT------ADNAEVIDVNGKLIA 52
Query: 80 PGFVNTHVH 88
PG V+ HVH
Sbjct: 53 PGLVDVHVH 61
|
| >1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3 c.1.9.6 Length = 458 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ N +V+ + + V ++ AI ++ A + ID + ++P
Sbjct: 4 VIVKNCRLVS---SDGITE-ADILVKDGKVAAISADTSDVE-----ASRTIDAGGKFVMP 54
Query: 81 GFVNTHVH 88
G V+ HVH
Sbjct: 55 GVVDEHVH 62
|
| >3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain, hydrolase, metal-binding, purine metabolism, zinc; HET: KCX; 2.10A {Escherichia coli} Length = 473 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ N ++ ++ R + V +I AIGQ A +++D ++ P
Sbjct: 25 LIIKNGTVILENEA----RVVDIAVKGGKIAAIGQDLG-------DAKEVMDASGLVVSP 73
Query: 81 GFVNTHVH 88
G V+ H H
Sbjct: 74 GMVDAHTH 81
|
| >1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A* Length = 458 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+++ N I+T ++ ++ + I IGQ+ + ++ID + + P
Sbjct: 2 LLIKNGEIIT---ADSRYK-ADIYAEGETITRIGQNLEAPP-----GTEVIDATGKYVFP 52
Query: 81 GFVNTHVH 88
GF++ HVH
Sbjct: 53 GFIDPHVH 60
|
| >3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, structural genomics; 2.00A {Staphylococcus aureus subsp} Length = 424 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 21 MIL-HNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILL 79
M L N ++ + + + + IK I + + IID + +
Sbjct: 1 MKLIKNGKVLQNGEL----QQADILIDGKVIKQIAPAIEPSN-----GVDIIDAKGHFVS 51
Query: 80 PGFVNTHVH 88
PGFV+ HVH
Sbjct: 52 PGFVDVHVH 60
|
| >3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti} Length = 490 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 12/68 (17%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
++ IVT D V V RI IG + + +D ++P
Sbjct: 3 TVIKGGTIVTADLT----YKADVKVEGGRIVEIGPNLS--------GAETLDATGCYVMP 50
Query: 81 GFVNTHVH 88
G ++ H H
Sbjct: 51 GGIDPHTH 58
|
| >2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase; HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3 c.1.9.6 PDB: 2fvk_A* 2fvm_A* Length = 559 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ N +I T S ++ + V +++ I S D ++ID + + P
Sbjct: 5 LIIKNGIICT---ASDIYA-AEIAVNNGKVQLIAASIDPSL-----GSEVIDAEGAFITP 55
Query: 81 GFVNTHVH 88
G ++ HVH
Sbjct: 56 GGIDAHVH 63
|
| >2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} SCOP: b.92.1.3 c.1.9.6 Length = 521 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQ 76
+ T+++ N +V + R F+ V V IK I ++ + + +++D +
Sbjct: 6 QTGTILIKNGTVVN---DDRYFK-SDVLVENGIIKEISKNIEPKE-----GIKVVDATDK 56
Query: 77 ILLPGFVNTHVH 88
+LLPG ++TH H
Sbjct: 57 LLLPGGIDTHTH 68
|
| >3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A {Brevibacillus agri} PDB: 1yny_A 1k1d_A* Length = 461 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 3e-05
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILL 79
+ N +VT S ++ V + +++ AIG ++ID LL
Sbjct: 2 KKWIRNGTVVT---ASDTYQ-ADVLIDGEKVVAIGSDLQA------TDAEVIDATGYYLL 51
Query: 80 PGFVNTHVH 88
PG ++ H H
Sbjct: 52 PGGIDPHTH 60
|
| >1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6 c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A 1m7j_A Length = 496 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 5e-05
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 12 SGSLGSSSTM----ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMA 67
GS+ IL ++ D + R V V DRI A+G + A
Sbjct: 10 HGSMSQPDATPFDYILSGGTVI--DGTNAPGRLADVGVRGDRIAAVGDLSA------SSA 61
Query: 68 DQIIDLQSQILLPGFVNTHVHTSQQL 93
+ ID+ +++ PGF+++H H L
Sbjct: 62 RRRIDVAGKVVSPGFIDSHTHDDNYL 87
|
| >1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia pickettii} SCOP: b.92.1.3 c.1.9.6 Length = 457 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 6e-05
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+I+ N IVT D + + +I IG + A++ ID + + P
Sbjct: 3 IIIKNGTIVTADGI----SRADLGIKDGKITQIGGALG-------PAERTIDAAGRYVFP 51
Query: 81 GFVNTHVH 88
G ++ H H
Sbjct: 52 GGIDVHTH 59
|
| >2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation, dihydropyrimi amidohydrolase, nucleotide metabolism, DPYS, dhpase, hydrolase; 2.80A {Homo sapiens} Length = 541 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQ 76
+ S +++ +V D V V ++A+G +++D +
Sbjct: 25 APSRLLIRGGRVVNDDFS----EVADVLVEDGVVRALGHDLLPPGGAPA-GLRVLDAAGK 79
Query: 77 ILLPGFVNTHVH 88
++LPG ++TH H
Sbjct: 80 LVLPGGIDTHTH 91
|
| >2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus} Length = 426 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 8e-05
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 13/69 (18%)
Query: 21 MIL-HNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILL 79
MIL N +V D V + + RI ++ A Q++D L
Sbjct: 1 MILIRNVRLV--DARGE-RGPADVLIGEGRILSLEGGE---------AKQVVDGTGCFLA 48
Query: 80 PGFVNTHVH 88
PGF++ H H
Sbjct: 49 PGFLDLHAH 57
|
| >2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A Length = 501 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 13/72 (18%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQ 76
+S +++ IV D+ +++ IK IG++ + + I+ S+
Sbjct: 24 TSDRLLIKGGKIVNDDQS----FYADIYMEDGLIKQIGENLIVPG-----GVKTIEAHSR 74
Query: 77 ILLPGFVNTHVH 88
+++PG ++ H
Sbjct: 75 MVIPGGIDVHTR 86
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 478 | |||
| 4dzh_A | 472 | Amidohydrolase; adenosine deaminase, nysgrc, struc | 100.0 | |
| 4dyk_A | 451 | Amidohydrolase; adenosine deaminase, nysgrc, struc | 100.0 | |
| 3lnp_A | 468 | Amidohydrolase family protein OLEI01672_1_465; TIM | 100.0 | |
| 4f0r_A | 447 | 5-methylthioadenosine/S-adenosylhomocysteine DEAM; | 100.0 | |
| 3h4u_A | 479 | Amidohydrolase; signature of Zn ligands, structura | 100.0 | |
| 3ls9_A | 456 | Triazine hydrolase; atrazine chlorohydrolase TRZN; | 100.0 | |
| 4aql_A | 476 | Guanine deaminase; hydrolase, purine metabolism; H | 100.0 | |
| 2paj_A | 492 | Putative cytosine/guanine deaminase; NYSGXRC, PSI- | 100.0 | |
| 4f0l_A | 458 | Amidohydrolase; ssgcid, structural genomics, seatt | 100.0 | |
| 3hpa_A | 479 | Amidohydrolase; signature of Zn ligands, structura | 100.0 | |
| 2i9u_A | 439 | Cytosine/guanine deaminase related protein; protei | 100.0 | |
| 2ood_A | 475 | BLR3880 protein; PSI-II, PSI-2, guanine deaminase, | 100.0 | |
| 1p1m_A | 406 | Hypothetical protein TM0936; putative metal depend | 100.0 | |
| 3v7p_A | 427 | Amidohydrolase family protein; iron binding site, | 100.0 | |
| 3mdu_A | 453 | N-formimino-L-glutamate iminohydrolase; amonohydra | 100.0 | |
| 1ra0_A | 430 | Cytosine deaminase; alpha-beta barrel, hexamer, co | 100.0 | |
| 2bb0_A | 421 | Imidazolonepropionase; TIM barrel, hydrolase; 2.00 | 100.0 | |
| 3feq_A | 423 | Putative amidohydrolase; unknown source, sargasso | 100.0 | |
| 3gnh_A | 403 | L-lysine, L-arginine carboxypeptidase CC2672; N-me | 100.0 | |
| 2r8c_A | 426 | Putative amidohydrolase; unknown source, sargasso | 100.0 | |
| 2qt3_A | 403 | N-isopropylammelide isopropyl amidohydrolase; N-is | 100.0 | |
| 2imr_A | 420 | Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, | 100.0 | |
| 2q09_A | 416 | Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dio | 100.0 | |
| 2puz_A | 419 | Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino | 100.0 | |
| 2p9b_A | 458 | Possible prolidase; protein structure initiative I | 100.0 | |
| 3be7_A | 408 | Zn-dependent arginine carboxypeptidase; unknown so | 100.0 | |
| 2qs8_A | 418 | XAA-Pro dipeptidase; amidohydrolase, TIM barrel, p | 100.0 | |
| 3ooq_A | 396 | Amidohydrolase; structural genomics, protein struc | 100.0 | |
| 2vun_A | 386 | Enamidase; nicotinate degradation, binuclear metal | 100.0 | |
| 1gkr_A | 458 | Hydantoinase, non-ATP dependent L-selective hydant | 100.0 | |
| 1gkp_A | 458 | Hydantoinase; hydrolase, dihydropyrimidinase, cycl | 100.0 | |
| 2fty_A | 559 | Dihydropyrimidinase; alpha/beta barrel, beta-sandw | 100.0 | |
| 3icj_A | 534 | Uncharacterized metal-dependent hydrolase; structu | 100.0 | |
| 3sfw_A | 461 | Dihydropyrimidinase; hydrolase, zinc binding; HET: | 100.0 | |
| 2ogj_A | 417 | Dihydroorotase; TIM barrel, binuclear zinc, imidaz | 100.0 | |
| 1yrr_A | 382 | N-acetylglucosamine-6-phosphate deacetylase; (beta | 100.0 | |
| 2gwn_A | 452 | Dihydroorotase; zinc-binding prote structural geno | 100.0 | |
| 1nfg_A | 457 | D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2 | 100.0 | |
| 2vm8_A | 501 | Dihydropyrimidinase-related protein 2; neurogenesi | 100.0 | |
| 1xrt_A | 467 | Dihydroorotase, dhoase; amidohydrolase, metalloenz | 100.0 | |
| 3e74_A | 473 | Allantoinase; (beta/alpha)8-barrel domain, small b | 100.0 | |
| 1e9y_B | 569 | Urease subunit beta; hydrolase, dodecamer; HET: KC | 100.0 | |
| 2ics_A | 379 | Adenine deaminase; TIM barrel, binuclear zinc, ade | 100.0 | |
| 2z00_A | 426 | Dihydroorotase; zinc binding protein, hydrolase, m | 100.0 | |
| 3mtw_A | 403 | L-arginine carboxypeptidase CC2672; hydrolase; HET | 100.0 | |
| 2vhl_A | 396 | N-acetylglucosamine-6-phosphate deacetylase; N- ac | 100.0 | |
| 3mpg_A | 428 | Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus | 100.0 | |
| 4ac7_C | 570 | Urease subunit alpha; hydrolase, bacillus pasteuri | 100.0 | |
| 4ubp_C | 570 | Protein (urease (chain C)); bacillus pasteurii, ni | 100.0 | |
| 3dc8_A | 490 | Dihydropyrimidinase; TIM-barrel, hydrolase; HET: K | 100.0 | |
| 3hm7_A | 448 | Allantoinase; metallo-dependent hydrolase, protein | 100.0 | |
| 3gip_A | 480 | N-acyl-D-glutamate deacylase; amidohydrolase famil | 100.0 | |
| 1rk6_A | 496 | D-aminoacylase; TIM barrel, beta barrel, insertion | 100.0 | |
| 3gri_A | 424 | Dihydroorotase, dhoase; hydrolase, IDP00795, metal | 100.0 | |
| 2ftw_A | 521 | Dihydropyrimidine amidohydrolase; (beta-alpha)8-ba | 100.0 | |
| 3iv8_A | 381 | N-acetylglucosamine-6-phosphate deacetylase; IDP01 | 100.0 | |
| 2vr2_A | 541 | Dihydropyrimidinase; hydantoinase, metal-binding, | 100.0 | |
| 3mkv_A | 426 | Putative amidohydrolase; sargasso SEA, structural | 100.0 | |
| 3nqb_A | 608 | Adenine deaminase 2; PSI-II, structural genomics, | 99.98 | |
| 4gy7_A | 840 | Urease; JACK bean, hydrolase, ME binding, nickel; | 99.97 | |
| 1onw_A | 390 | Isoaspartyl dipeptidase; amidohydrolase, hydrolase | 99.97 | |
| 1o12_A | 376 | N-acetylglucosamine-6-phosphate deacetylase; struc | 99.96 | |
| 4ep8_C | 566 | Urease subunit alpha; alpha-beta barrel, nickel me | 99.96 | |
| 2pgf_A | 371 | Adenosine deaminase; metallo-dependent hydrolase, | 99.64 | |
| 3ggm_A | 81 | Uncharacterized protein BT9727_2919; bacillus cere | 99.61 | |
| 3pnu_A | 359 | Dihydroorotase; TIM barrel, zinc binding, hydrolas | 99.6 | |
| 3pao_A | 326 | Adenosine deaminase; structural genomics, PSI-2, p | 99.48 | |
| 3rys_A | 343 | Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2 | 99.47 | |
| 2z26_A | 347 | Dihydroorotase, dhoase; TIM barrel, hydrolase; HET | 99.44 | |
| 3iar_A | 367 | Adenosine deaminase; purine metabolism structural | 99.26 | |
| 2ob3_A | 330 | Parathion hydrolase; metalloenzyme, TIM barrel, ne | 99.12 | |
| 2vc7_A | 314 | Aryldialkylphosphatase; phosphotriesterase, promis | 99.04 | |
| 1bf6_A | 291 | Phosphotriesterase homology protein; hypothetical | 99.0 | |
| 3tn4_A | 360 | Phosphotriesterase; lactonase, hydrolase; HET: KCX | 98.84 | |
| 3ovg_A | 363 | Amidohydrolase; structural genomics, PSI-2, protei | 98.82 | |
| 3k2g_A | 364 | Resiniferatoxin-binding, phosphotriesterase- relat | 98.77 | |
| 2a3l_A | 701 | AMP deaminase, AMPD; atampd, AT2G38280, adenosine | 98.69 | |
| 2y1h_A | 272 | Putative deoxyribonuclease tatdn3; hydrolase; 2.50 | 98.69 | |
| 3gtx_A | 339 | Organophosphorus hydrolase; mutant, amidohydrolase | 98.68 | |
| 1zzm_A | 259 | Putative deoxyribonuclease YJJV; hydrolaze, zinc, | 98.68 | |
| 3pnz_A | 330 | Phosphotriesterase family protein; amidohydrolase | 98.57 | |
| 3rcm_A | 287 | TATD family hydrolase; HET: CIT; 2.05A {Pseudomona | 98.54 | |
| 3rhg_A | 365 | Putative phophotriesterase; hydrolase, amidohydrol | 98.52 | |
| 1xwy_A | 264 | DNAse TATD, deoxyribonuclease TATD; TIM barrael, z | 98.5 | |
| 1yix_A | 265 | Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW | 98.47 | |
| 4gxw_A | 380 | Adenosine deaminase; amidohydrolase, COG1816, EFI, | 98.44 | |
| 3gg7_A | 254 | Uncharacterized metalloprotein; structural genomic | 98.19 | |
| 3lgd_A | 508 | Adenosine deaminase CECR1; TIM barrel, dimerizatio | 98.1 | |
| 2xio_A | 301 | Putative deoxyribonuclease tatdn1; hydrolase; 1.19 | 97.97 | |
| 4i6k_A | 294 | Amidohydrolase family protein; enzyme function ini | 97.96 | |
| 1j6o_A | 268 | TATD-related deoxyribonuclease; structural genomic | 97.88 | |
| 2gzx_A | 265 | Putative TATD related DNAse; deoxyribonuclease, NE | 97.82 | |
| 3ipw_A | 325 | Hydrolase TATD family protein; niaid, ssgcid, seat | 97.8 | |
| 2ffi_A | 288 | 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; | 97.76 | |
| 3guw_A | 261 | Uncharacterized protein AF_1765; alpha-beta protei | 97.71 | |
| 3cjp_A | 272 | Predicted amidohydrolase, dihydroorotase family; s | 97.04 | |
| 2dvt_A | 327 | Thermophilic reversible gamma-resorcylate decarbo; | 96.97 | |
| 4d9a_A | 303 | 2-pyrone-4,6-dicarbaxylate hydrolase; structural g | 96.95 | |
| 3irs_A | 291 | Uncharacterized protein BB4693; structural genomic | 96.76 | |
| 2f6k_A | 307 | Metal-dependent hydrolase; metal dependent hydroly | 96.45 | |
| 4do7_A | 303 | Amidohydrolase 2; enzyme function initiative, EFI, | 96.23 | |
| 3qy7_A | 262 | Tyrosine-protein phosphatase YWQE; TIM barrel, pol | 96.03 | |
| 3e2v_A | 401 | 3'-5'-exonuclease; structural genomics, hydrolase, | 94.8 | |
| 2wje_A | 247 | CPS4B, tyrosine-protein phosphatase CPSB; capsule | 94.56 | |
| 1v77_A | 212 | PH1877P, hypothetical protein PH1877; RNAse P prot | 92.28 | |
| 2gwg_A | 350 | 4-oxalomesaconate hydratase; TIM-barrel like prote | 91.33 |
| >4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-56 Score=442.94 Aligned_cols=428 Identities=27% Similarity=0.444 Sum_probs=354.8
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~ 96 (478)
++++++|+|++|+|++++..++++++|+|+||+|++|++..+.+..+ .++++||++|++|+|||||+|+|+.+..+++
T Consensus 12 ~~~d~li~~~~v~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~--~~~~viD~~g~~v~PGlID~H~Hl~~~~~~g 89 (472)
T 4dzh_A 12 EPCDLLIEAGYVVPIEPHAVVLEDHAVAVSNGVIVAVLPTADARVRF--APARTVSRPDAALMPGLVNAHTHNPMTLLRG 89 (472)
T ss_dssp EEEEEEEEEEEECCSSSTTCCEEEEEEEEETTEEEEEEEHHHHHHHE--EEEEEEEEEEEEEEECEEEEEECGGGGGGTT
T ss_pred CcCcEEEECCEEEecCCCCcEecceEEEEECCEEEEEeCchhhhhcC--CCCeEEeCCCcEEEECccccccChhhHHhcc
Confidence 45789999999999887667889999999999999999866543222 2568999999999999999999999999998
Q ss_pred ccCCCCchHHhhhccccccC-CCChHHHHHHHHHHHHHHHhcCcceeecCCccCHHHHHHHHHHhCCeEEEecccccCCC
Q 011766 97 IADDVDLMTWLHDRIWPYES-NMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGE 175 (478)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 175 (478)
...+.++.+|+....|+.+. .+++++.+........+++++|||++.+++ .......+.....|++.......++..
T Consensus 90 ~~~~~~l~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~~~~~a~~~~g~r~~~~~~~~~~~- 167 (472)
T 4dzh_A 90 VADDLPLMVWLQQHIWPVEAAVIGPEFVADGTTLAIAEMLRGGTTCVNENY-FFADVQAAVYKQHGFRALVGAVIIDFP- 167 (472)
T ss_dssp SSCSCCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEEEC-SCHHHHHHHHHHTTCEEEEEEEECSSC-
T ss_pred ccCCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcc-cCHHHHHHHHHHhCCeEEEEecccCCC-
Confidence 88888999999888777654 477788888888899999999999999986 456677788888999987776554321
Q ss_pred CCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEec
Q 011766 176 GLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHV 255 (478)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~ 255 (478)
..+. ....+... ...++++++.. .+.+++.++++..+.++++.+.+++++|+++|+++++|+
T Consensus 168 ---~~~~-~~~~~~~~------------~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~iH~ 229 (472)
T 4dzh_A 168 ---TAWA-SSDDEYFA------------RAGELHDQWRD--DPLISTAFAPHAPYTVNDANFERVRMLADQLDMPVHLHT 229 (472)
T ss_dssp ---CSSC-SSHHHHHH------------HHHHHHHHHTT--CSSEEEEEEECCTTTSCHHHHHHHHHHHHHHTCCEEEEE
T ss_pred ---cccc-cCHHHHHH------------HHHHHHHHhCC--CCceEEEEecCCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 1110 01111111 34445555543 467888888999999999999999999999999999999
Q ss_pred cCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCCCcHHHHHHC
Q 011766 256 AEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHA 334 (478)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~ 334 (478)
.+...+........+. ..++.+...+.+..+.++.|+.++++++++++++.|+.+++||.+++.. .+..|++.+++.
T Consensus 230 ~e~~~~~~~~~~~~g~--~~i~~~~~~g~~~~~~~~~H~~~l~~~~i~~l~~~g~~v~~~p~s~~~~~~~~~~~~~~~~~ 307 (472)
T 4dzh_A 230 HETAQEVADSVAQYGQ--RPLARLDRLGLVNDRLIAVHMTQLTEAEIHLCAERGVSVVHCPESNLKLASGFCPACALQRA 307 (472)
T ss_dssp SCCHHHHHHHHHHHSS--CHHHHHHHHTCCSTTEEEEECCSCCHHHHHHHHHHTCEEEECHHHHHHTTCCCCCHHHHHHT
T ss_pred CCCHHHHHHHHHHhCC--CHHHHHHHcCCCCCCeEEEeccCCCHHHHHHHHHcCCEEEEChHHHHhcCCCCccHHHHHHC
Confidence 9887766655554443 3678888999999999999999999999999999999999999998876 678999999999
Q ss_pred CCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccE
Q 011766 335 DICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADM 414 (478)
Q Consensus 335 gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADl 414 (478)
|+++++|||++..+++.+++.+++.+....... ...+.++|++++++++|.|||+++|+++++|+|++||.|||
T Consensus 308 Gv~v~lgtD~~~~~~~~~~~~~~~~a~~~~~~~------~~~~~~l~~~~al~~~T~~~A~~lgl~~~~G~l~~G~~ADl 381 (472)
T 4dzh_A 308 SVNLAIGTDGCASNNDLDMFSENRTAAILAKAV------ANDATALDAATTLRAATLGGARALGFGDRIGSIEVGKQADL 381 (472)
T ss_dssp TCEEEECCCCTTSSCCCCHHHHHHHHHHHHHHH------HTCTTSSCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCE
T ss_pred CCCEEEECCCCcCCCCCCHHHHHHHHHHHhhhh------cCCCCcCCHHHHHHHHHHHHHHHcCCCCCCcccCCCCcCCE
Confidence 999999999987667789999998776543321 11245799999999999999999999988999999999999
Q ss_pred EEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHHHHHH
Q 011766 415 VVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKL 474 (478)
Q Consensus 415 vv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~ 474 (478)
||+|.+++...|..||++.+++.....+|..||++|++||++|++++++.+++.++.++.
T Consensus 382 vv~d~~~~~~~~~~~~~~~l~~~~~~~~V~~v~v~G~~v~~~g~~~~~d~~~i~~~~~~~ 441 (472)
T 4dzh_A 382 VCVDLSALETQPLHHVLSQLIYAAGRHQVTDVWIAGKPKLVQRELIDMDTAALVANARQW 441 (472)
T ss_dssp EEEECCSGGGCSCSCHHHHHHHTCCGGGEEEEEETTEEEEETTEETTCCHHHHHHHHHHH
T ss_pred EEEcCCCCccCCccCHHHHHhhcCCCCCceEEEECCEEEEECCEECcCCHHHHHHHHHHH
Confidence 999999888778889999999888888999999999999999999999999999776543
|
| >4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-55 Score=438.53 Aligned_cols=427 Identities=29% Similarity=0.472 Sum_probs=353.6
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~ 96 (478)
++++++|+|++|+|+++....+++++|+|+||+|++|++..+.. ...++++||++|++|+|||||+|+|+.+..+++
T Consensus 6 ~~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~ig~~~~~~---~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~~g 82 (451)
T 4dyk_A 6 NPFDLLLLPTWIVPVEPAGVVLRDHALGIRDGQIALVAPREQAM---RHGATEIRELPGMLLAPGLVNAHGHSAMSLFRG 82 (451)
T ss_dssp CCEEEEEEEEEECCSSSTTCCEESEEEEEETTEEEEEEEHHHHT---TTCEEEEEEEEEEEEEECEEECCCCGGGGGGTT
T ss_pred chhcEEEECCEEEeeCCCCcEEeccEEEEECCEEEEEeCccccc---cCCCCeEEeCCCCEEeecccchhhChhhHHhcc
Confidence 46789999999999877667888999999999999999865431 123568999999999999999999999999998
Q ss_pred ccCCCCchHHhhhccccccC-CCChHHHHHHHHHHHHHHHhcCcceeecCCccCHHHHHHHHHHhCCeEEEecccccCCC
Q 011766 97 IADDVDLMTWLHDRIWPYES-NMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGE 175 (478)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 175 (478)
...+.++.+|+....|+.+. .+++++.+........+++++|||++.++. .......+.....|++.......++..
T Consensus 83 ~~~~~~l~~wl~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~~~~~a~~~~g~r~~~~~~~~~~~- 160 (451)
T 4dyk_A 83 LADDLPLMTWLQDHIWPAEGQWVSEDFIRDGTELAIAEQVKGGITCFSDMY-FYPQAICGVVHDSGVRAQVAIPVLDFP- 160 (451)
T ss_dssp SSCSSCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEEEC-SCHHHHHHHHHHHTCEEEEEEEECSSC-
T ss_pred CCCCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcc-cCHHHHHHHHHHcCCeEEEEchhhCCC-
Confidence 88888999999888877655 467777777888888999999999999984 446677788888999998776655421
Q ss_pred CCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEec
Q 011766 176 GLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHV 255 (478)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~ 255 (478)
..+ ......... ...++++++.. .+.++..++++..+.++++.+.++++.|+++|+++++|+
T Consensus 161 ---~~~-~~~~~~~~~------------~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 222 (451)
T 4dyk_A 161 ---IPG-ARDSAEAIR------------QGMALFDDLKH--HPRIRIAFGPHAPYTVSDDKLEQILVLTEELDASIQMHV 222 (451)
T ss_dssp ---BTT-BSSHHHHHH------------HHHHHHHHTTT--CSSEEEEEEECCGGGSCHHHHHHHHHHHHHHTCCEEEEE
T ss_pred ---Ccc-ccCHHHHHH------------HHHHHHHHhcC--CCceEEEEecCCCCccCHHHHHHHHHHHHHcCCcEEEEe
Confidence 111 011111111 34455555443 467888888999999999999999999999999999999
Q ss_pred cCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCCCcHHHHHHC
Q 011766 256 AEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHA 334 (478)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~ 334 (478)
.+............+. ..++.+...+.+..+.++.|+.++++++++++++.++.+++||.+++.. .+..|++.+++.
T Consensus 223 ~e~~~~~~~~~~~~g~--~~i~~~~~~g~~~~~~~~~H~~~~~~~~~~~l~~~g~~v~~~p~s~~~~~~~~~~~~~~~~~ 300 (451)
T 4dyk_A 223 HETAFEVEQAMERNGE--RPLARLHRLGLLGPRFQAVHMTQVDNDDLAMLVETNSSVIHCPESNLKLASGFCPVEKLWQA 300 (451)
T ss_dssp SCCHHHHHHHHHHHSS--CHHHHHHHTTCCSTTEEEEECCCCCHHHHHHHHHHTCEEEECHHHHHHTTCCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC--CHHHHHHHCCCCCCCeEEEECCCCCHHHHHHHHHcCCEEEEChhhhhhccCCcccHHHHHhC
Confidence 9887665555544433 3678889999999999999999999999999999999999999998876 678999999999
Q ss_pred CCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccE
Q 011766 335 DICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADM 414 (478)
Q Consensus 335 gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADl 414 (478)
|+++++|||+++.++..+++.+++.+....+... ....++|++++++++|.|||+++|+++++|+|++||.|||
T Consensus 301 Gv~v~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADl 374 (451)
T 4dyk_A 301 GVNVAIGTDGAASNNDLDLLGETRTAALLAKAVY------GQATALDAHRALRMATLNGARALGLERLIGSLEAGKAADL 374 (451)
T ss_dssp TCCEEECCCCGGGSSCCCHHHHHHHHHHHHHHHH------TCTTSSCHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCE
T ss_pred CCeEEEECCCCccCCCCCHHHHHHHHHHHhhhhc------CCCCCCCHHHHHHHHHHHHHHHcCCCCCCcCcCCCCcCCE
Confidence 9999999999876667899999987765433211 1235799999999999999999999988999999999999
Q ss_pred EEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHHHHHH
Q 011766 415 VVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKL 474 (478)
Q Consensus 415 vv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~ 474 (478)
||||.+++...|..||++.+++.....+|..||++|++||++|++++.+.++++++.++.
T Consensus 375 vv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~~~~~~~~ 434 (451)
T 4dyk_A 375 VAFDLSGLAQQPVYDPVSQLIYASGRDCVRHVWVGGRQLLDDGRLLRHDEQRLIARAREW 434 (451)
T ss_dssp EEEECCSGGGCSCSCHHHHHHHHCCGGGEEEEEETTEEEEETTEESSSCHHHHHHHHHHH
T ss_pred EEEeCCCCccCCCCCHHHHhhccCCCCCccEEEECCEEEEECCEECcCCHHHHHHHHHHH
Confidence 999999888888899999998888888999999999999999999999999999877664
|
| >3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-55 Score=437.21 Aligned_cols=428 Identities=29% Similarity=0.490 Sum_probs=351.6
Q ss_pred ccceeEEEecEEEeeCCCC------ceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccc
Q 011766 17 SSSTMILHNAVIVTMDKES------RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTS 90 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~------~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~ 90 (478)
++++++|+|++|+|+++.. .++++++|+|+||+|++|++..+. ...++++||++|++|+|||||+|+|+.
T Consensus 21 ~~~~~li~~~~v~~~~~~~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~----~~~~~~viD~~g~~v~PGlID~H~H~~ 96 (468)
T 3lnp_A 21 AHADLRINSHWIIPIENTTDHNLVSNILIDHCLLIKDGIILAIEPQSSC----QIPATETLDLGQQVLMPGWVNAHGHAA 96 (468)
T ss_dssp CCEEEEEEEEEECCSSCC-----CCSCEEEEEEEEETTEEEEEEETTTC----CCCEEEEEECCSEEEEECEEECSCCGG
T ss_pred ccccEEEECCEEEeecCCcccccCccEecceEEEEECCEEEEEeCCccc----cCCCCeEEeCCCcEEEeCeechhhChh
Confidence 4578999999999987765 578899999999999999986531 123568999999999999999999999
Q ss_pred hhhhccccCCCCchHHhhhccccccC-CCChHHHHHHHHHHHHHHHhcCcceeecCCccCHHHHHHHHHHhCCeEEEecc
Q 011766 91 QQLAKGIADDVDLMTWLHDRIWPYES-NMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQS 169 (478)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~~ 169 (478)
+..+++...+.++.+|+....|+.+. .++.++.+........+++++|||++.++. .......+.....|++.+....
T Consensus 97 ~~~~~g~~~~~~l~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~~~~~~~~~~g~r~~~~~~ 175 (468)
T 3lnp_A 97 MSLFRGLADDLPLMTWLQEHVWPAEAQHVDEHFVKQGTELAIAEMIQSGTTTFADMY-FYPQQSGEAALAAGIRAVCFAP 175 (468)
T ss_dssp GGGGTTSSCSCCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEECC-SCHHHHHHHHHHHTCEEEEEEE
T ss_pred hhhhccCcCCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcc-cCHHHHHHHHHHcCCeEEEecc
Confidence 99899888888999999888877654 367777777888889999999999999974 3456667778889999887765
Q ss_pred cccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCC---CCCeEEEEeccccccCCHHHHHHHHHHHHH
Q 011766 170 TMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAA---DGRIRIWFGIRQIMNATDRLLLETRDMARE 246 (478)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 246 (478)
.++... .+ .....+... ...++++.+.... .+.++..+.++..+.++++.+.++++.|++
T Consensus 176 ~~~~~~----~~-~~~~~~~~~------------~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~l~~~~~~A~~ 238 (468)
T 3lnp_A 176 VLDFPT----NY-AQNADEYIR------------KAIECNDRFNNHPMNEQGLVQIGFGPHAPYTVSDEPLKEITMLSDQ 238 (468)
T ss_dssp ECSSCC----SS-CSSHHHHHH------------HHHHHHHHHHSCGGGTTCCEEEEEEECCTTTSCHHHHHHHHHHHHH
T ss_pred ccCCCc----cc-ccCHHHHHH------------HHHHHHHHhhcCCcccCceEEEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 543211 11 011111111 3445555554432 357888888899899999999999999999
Q ss_pred cCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCC
Q 011766 247 FKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGF 325 (478)
Q Consensus 247 ~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~ 325 (478)
.|+++++|+.+............+. ..++.+...+.+..+.++.|+.++++++++++++.++.+++||.+++.. .+.
T Consensus 239 ~g~~v~~H~~e~~~~~~~~~~~~g~--~~i~~~~~~g~l~~~~~~~H~~~~~~~~~~~l~~~g~~v~~~p~s~~~~~~~~ 316 (468)
T 3lnp_A 239 LDMPVQIHLHETDFEVSESLETFNK--RPTQRLADIGFLNERVSCVHMTQVDDGDIKILQKTGASIIHCPESNLKLASGF 316 (468)
T ss_dssp HTCCEEEEESCSHHHHHHHHHHHSS--CHHHHHHHTTCCSTTEEEEECCSCCHHHHHHHHHHCCEEEECHHHHHHTTCCC
T ss_pred cCCcEEEEeCCCHHHHHHHHHHhCC--CHHHHHHHcCCCCCCeEEEeccCCCHHHHHHHHhcCCEEEEChhhhhhcCCCC
Confidence 9999999999886655555444433 3678889999999999999999999999999999999999999998876 678
Q ss_pred CcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccc
Q 011766 326 APIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGS 405 (478)
Q Consensus 326 ~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~ 405 (478)
.|++.+++.|+++++|||++..++..+++.+++.+....+... ....++|++++++++|.|||+++|+++++|+
T Consensus 317 ~~~~~~~~~Gv~v~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~al~~~T~~~A~~lg~~~~~G~ 390 (468)
T 3lnp_A 317 CPIAKLSAANIPLAIGTDGAASNNDLDMFSETKTAALLAKGVS------QDASAIPAIEALTMATLGGARALGIDDITGS 390 (468)
T ss_dssp CCHHHHHHTTCCEEECCCCTTSSCCCCHHHHHHHHHHHHHHHH------TCTTSSCHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred CCHHHHHHCCCeEEEECCCCcCCCCCCHHHHHHHHHHHhhhcc------CCCCcCCHHHHHHHHHHHHHHHhCCCCCccc
Confidence 8999999999999999999877667899999987765433211 1245799999999999999999999988999
Q ss_pred cccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHHHHHH
Q 011766 406 LEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKL 474 (478)
Q Consensus 406 l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~ 474 (478)
|++||.|||||||.+++...|..||++.+++.....+|..||++|++||++|++++++.++++++.++.
T Consensus 391 l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~~~~~~~~ 459 (468)
T 3lnp_A 391 LKPGKAADIQAIDLNTLSSQPVFDPVSHMVYCTKSTQVSHVWVNGRCLLKNGELTTLNEETLINHAKAW 459 (468)
T ss_dssp CCTTSBCCEEEEECCSGGGCSCSCHHHHHHHSCCGGGEEEEEETTEEEEETTEESSSCHHHHHHHHHHH
T ss_pred cCCCCcCCEEEEeCCCCccCCccCHHHHhhccCCCCCceEEEECCEEEEECCeECCCCHHHHHHHHHHH
Confidence 999999999999999888888899999998888889999999999999999999999999999887664
|
| >4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-55 Score=432.93 Aligned_cols=427 Identities=28% Similarity=0.456 Sum_probs=349.5
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~ 96 (478)
++++++|+|++|+|++++...+.+++|+|+||+|++|++..+.+ ...++++||++|++|+|||||+|+|+.+..+++
T Consensus 4 ~~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~---~~~~~~viD~~g~~v~PGlID~H~Hl~~~~~~g 80 (447)
T 4f0r_A 4 SRYEKIISARWIITVETDGEVLENHAIAIRDGKIAAIIPAADAA---GLEADERLELPDHVLMPGLINLHGHSAMSLLRG 80 (447)
T ss_dssp -CEEEEEEEEEEECCSSTTCEEEEEEEEEETTEEEEEEEHHHHT---TSCEEEEEEEEEEEEEECEEEEEECGGGGGGTT
T ss_pred CcccEEEECCEEEeeCCCCcEeeceEEEEECCEEEEEecccccc---cCCCCeEEeCCCcEEeeCccchhhChhhHhhcc
Confidence 46789999999999887767889999999999999999865432 123568999999999999999999999988888
Q ss_pred ccCCCCchHHhhhccccccC-CCChHHHHHHHHHHHHHHHhcCcceeecCCccCHHHHHHHHHHhCCeEEEecccccCCC
Q 011766 97 IADDVDLMTWLHDRIWPYES-NMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGE 175 (478)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 175 (478)
...+.++.+|+....|+.+. .+++++.+........+++++|||++.++. .......+.....|++.+.....++..
T Consensus 81 ~~~~~~~~~wl~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~~~~~~~~~~g~r~~~~~~~~~~~- 158 (447)
T 4f0r_A 81 LADDKALMDWLTNYIWPTEGKHVHDDFVFDGSLLAMGEMIRGGTTTINDMY-FYNAAVARAGLASGMRTFVGCSILEFP- 158 (447)
T ss_dssp SSCSSCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEECB-SCHHHHHHHHHHHTCEEEEEEEECSSC-
T ss_pred CCCCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcc-cCHHHHHHHHHHcCCeEEEEchhcCCC-
Confidence 88888999999888777654 466777777777788999999999999974 345667777888999888766554321
Q ss_pred CCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEec
Q 011766 176 GLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHV 255 (478)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~ 255 (478)
..+ ....++... ...++++++. +.+.+++...++..+.++++.+.+++++|++.|+++++|+
T Consensus 159 ---~~~-~~~~~~~~~------------~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~iH~ 220 (447)
T 4f0r_A 159 ---TNY-ASNADDYIA------------KGMAERSQFL--GEDLLTFTLAPHAPYTVSDDTFRKVVTLAEQEDMLIHCHI 220 (447)
T ss_dssp ---CSS-CSSHHHHHH------------HHHHHHHTTT--TCTTEEEEEEECCGGGSCHHHHHHHHHHHHHHTCCEEEEE
T ss_pred ---ccc-ccCHHHHHH------------HHHHHHHHhc--CCCceEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 111 001111111 3334444433 3467888888888889999999999999999999999999
Q ss_pred cCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCCCcHHHHHHC
Q 011766 256 AEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHA 334 (478)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~ 334 (478)
.+............+. ..++.+...+.+..+.++.|+.++++++++++++.|+.+++||.+++.. .+..+++.+++.
T Consensus 221 ~~~~~~~~~~~~~~g~--~~i~~~~~~g~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~ 298 (447)
T 4f0r_A 221 HETADEVNNSVKEHGQ--RPLARLQRLGLLSPRLVAAHMVHLNDAEVELAARHGLSTAHNPASNMKLASGISPVSKLMDA 298 (447)
T ss_dssp SCCHHHHHHHHHHHSS--CHHHHHHHHTCCSTTEEEEECCSCCHHHHHHHHHHTCEEEECHHHHHHTTCCCCCHHHHHHT
T ss_pred CCCHHHHHHHHHHcCC--CHHHHHHHcCCCCCCcEEEeccCCCHHHHHHHHHcCCEEEECchhhhhcCCCCCcHHHHHHC
Confidence 9886655554444432 3678888999999999999999999999999999999999999988776 678999999999
Q ss_pred CCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccE
Q 011766 335 DICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADM 414 (478)
Q Consensus 335 gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADl 414 (478)
|+++++|||+++.++..+++.+++.+........ ....++|++++++++|.|||+++|+++++|+|++|+.|||
T Consensus 299 Gv~v~lgTD~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~al~~~T~n~A~~lg~~~~~G~l~~G~~ADl 372 (447)
T 4f0r_A 299 GVAVGIGTDGAASNNKLDMLAETRLAALLAKVGT------LDPTSVPAAAAIRMATLNGARALGIADKVGSVKVGKQADL 372 (447)
T ss_dssp TCEEEECCCCGGGTCCCCHHHHHHHHHHHHHHHH------TCTTSSCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCE
T ss_pred CCcEEEeCCCCcCCCCCCHHHHHHHHHHHhhhhc------cCCCCCCHHHHHHHHHHHHHHHhCCCCCccccCCCCcCCE
Confidence 9999999999876667889999987765433211 1235799999999999999999999988999999999999
Q ss_pred EEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHHHHHH
Q 011766 415 VVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKL 474 (478)
Q Consensus 415 vv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~ 474 (478)
||||.+++...|..||++.+++.....+|..||++|++||++|++++++.++++++.++.
T Consensus 373 vv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~~~~~~~~ 432 (447)
T 4f0r_A 373 IALDLAQLETAPAFDPISHVVYAAGREQVSHVWVKGRALMRERKLTTLDESDLKARAGDW 432 (447)
T ss_dssp EEEECCSGGGCSCSCHHHHHHHTCCGGGEEEEEETTEEEEETTEESSSCHHHHHHHHHHH
T ss_pred EEEeCCCCCcCCCcChHHHheecCCCCCceEEEECCEEEEECCeECcCCHHHHHHHHHHH
Confidence 999999888788889999998888888999999999999999999999999999877764
|
| >3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A {Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-54 Score=431.32 Aligned_cols=428 Identities=25% Similarity=0.354 Sum_probs=347.3
Q ss_pred eEEEec-EEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccC
Q 011766 21 MILHNA-VIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (478)
Q Consensus 21 ~~i~n~-~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~ 99 (478)
++|+|+ .|+|+++....+++++|+|+||+|++|++... ...++++||++|++|+|||||+|+|+.++.+++...
T Consensus 2 ~li~n~~~v~t~d~~~~~~~~~~v~i~~g~I~~vg~~~~-----~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~~g~~~ 76 (456)
T 3ls9_A 2 ILIRGLTRVITFDDQERELEDADILIDGPKIVAVGKDLS-----DRSVSRTIDGRGMIALPGLINSHQHLYEGAMRAIPQ 76 (456)
T ss_dssp EEEEEEEEEECCCTTCCEEEEEEEEEETTEEEEEESSCC-----CTTCSEEEECTTEEEEECEEEEEECGGGGGGBTCGG
T ss_pred EEEEcCcEEEEcCCCCceeccceEEEECCEEEEeCCCCC-----CCCCCeEEeCCCCEEecCeeecccccchhhhccccc
Confidence 689999 78888877778899999999999999998632 123678999999999999999999999999888743
Q ss_pred --CCCchHHhhhc------cccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc--------CHHHHHHHHHHhCCe
Q 011766 100 --DVDLMTWLHDR------IWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--------HVSEMAKAVELLGLR 163 (478)
Q Consensus 100 --~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~--------~~~~~~~~~~~~g~~ 163 (478)
+.++.+|+... .++. ..+++++.+......+.+++++|||++.+++.. ......+.....|++
T Consensus 77 ~~~~~l~~~l~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~a~~~~g~r 155 (456)
T 3ls9_A 77 LERVTMASWLEGVLTRSAGWWRD-GKFGPDVIREVARAVLLESLLGGITTVADQHLFFPGATADSYIDATIEAATDLGIR 155 (456)
T ss_dssp GSSCCHHHHHHHHHHHHHHHHHT-TSSSHHHHHHHHHHHHHHHHHTTEEEEEEEECCCCSSSCCTHHHHHHHHHHHHTCE
T ss_pred CCCCCHHHHHHHhcccccccccc-ccCCHHHHHHHHHHHHHHHHhCCeeEEEeccccccCcccchhHHHHHHHHHHcCCE
Confidence 78899998766 3332 257888888888889999999999999987321 133457778889999
Q ss_pred EEEecccccCCC---CCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcC-CCCCCeEEEEeccccccCCHHHHHH
Q 011766 164 ACLVQSTMDCGE---GLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHH-AADGRIRIWFGIRQIMNATDRLLLE 239 (478)
Q Consensus 164 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (478)
.......++.+. ..++............ ...++++.+.. ...+.+....+++..+.++++.+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 223 (456)
T 3ls9_A 156 FHAARSSMTLGKSEGGFCDDLFVEPVDRVVQ------------HCLGLIDQYHEPEPFGMVRIALGPCGVPYDKPELFEA 223 (456)
T ss_dssp EEEEECCCCCCGGGTCSSCGGGCCCHHHHHH------------HHHHHHHHHCCCSTTCSEEEEECCCCTTTSCHHHHHH
T ss_pred EEEEccccccccccccCCccccccCHHHHHH------------HHHHHHHHhhCcCCCCceEEEEecCCCCCCCHHHHHH
Confidence 887655544321 1111111111111111 44555666554 2356788888999999999999999
Q ss_pred HHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccch
Q 011766 240 TRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASA 319 (478)
Q Consensus 240 ~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~ 319 (478)
+++.|+++|+++++|+.+...+ .......+. ..++.+...+.+..+..+.|+.++++++++++++.++.+++||.++
T Consensus 224 ~~~~a~~~g~~v~~H~~e~~~~-~~~~~~~~~--~~~~~~~~~g~~~~~~~i~H~~~~~~~~~~~l~~~g~~~~~~p~s~ 300 (456)
T 3ls9_A 224 FAQMAADYDVRLHTHFYEPLDA-GMSDHLYGM--TPWRFLEKHGWASDRVWLAHAVVPPREEIPEFADAGVAIAHLIAPD 300 (456)
T ss_dssp HHHHHHHHTCEEEEEECCTTHH-HHHHHHHSS--CHHHHHHHTTCSSTTEEEEECCSCCGGGHHHHHHHTCEEEECHHHH
T ss_pred HHHHHHHCCCCEEEEeCCCchH-HHHHHHhCC--CHHHHHHHcCCCCCCcEEEeccCCCHHHHHHHHHcCCEEEEChhHH
Confidence 9999999999999999988877 555554443 3678888999999999999999999999999999999999999998
Q ss_pred hhc-cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcC
Q 011766 320 MRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVL 398 (478)
Q Consensus 320 ~~~-~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lg 398 (478)
+.. .+..|++.+++.|+++++|||+++.++..+++.+++.+........ ....++++|++++++++|.|||+++|
T Consensus 301 ~~l~~~~~~~~~~~~~Gv~v~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~al~~~T~~~A~~lg 376 (456)
T 3ls9_A 301 LRMGWGLAPIREYLDAGITVGFGTTGSASNDGGNLLGDLRLAALAHRPAD----PNEPEKWLSARELLRMATRGSAECLG 376 (456)
T ss_dssp HHTTCCCCCHHHHHHTTCEEEECCCCTTSSCCCCHHHHHHHHHHHTGGGS----TTCGGGSCCHHHHHHHTTHHHHHHTT
T ss_pred hhcCCCcchHHHHHHCCCcEEEECCCCccCCCCCHHHHHHHHHHHhcccc----ccccccCCCHHHHHHHHHHHHHHHhC
Confidence 877 7789999999999999999999876667899999998876654321 01123369999999999999999999
Q ss_pred CCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHHHHHH
Q 011766 399 WDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKL 474 (478)
Q Consensus 399 l~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~ 474 (478)
+++ +|+|++||.|||||||.+++...+..||++.+++.....+|..||++|++||++|++++.+.++++++.++.
T Consensus 377 ~~~-~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~~~~~~~~ 451 (456)
T 3ls9_A 377 RPD-LGVLEEGRAADIACWRLDGVDRVGVHDPAIGLIMTGLSDRASLVVVNGQVLVENERPVLADLERIVANTTAL 451 (456)
T ss_dssp CTT-SSCCSTTSBCCEEEEESCSGGGTTBSSHHHHHHHCCSBCCCSEEEETTEEEEETTEESSSCHHHHHHHHHHH
T ss_pred CCC-CCccCCCCccCEEEEeCCCCccCCCCChHHHhhccCCCCCeeEEEECCEEEEECCEeCCCCHHHHHHHHHHH
Confidence 987 899999999999999999888888889999998888778999999999999999999999999999888775
|
| >4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A {Homo sapiens} PDB: 2uz9_A* 3e0l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-52 Score=418.16 Aligned_cols=424 Identities=21% Similarity=0.342 Sum_probs=341.5
Q ss_pred ccceeEEEecEEEeeCC-CCceeecceEEEEC-CEEEEEcCChhhh---hhhccCCCeEEeC-CCCEEeecccccccccc
Q 011766 17 SSSTMILHNAVIVTMDK-ESRVFRNGGVFVVQ-DRIKAIGQSADIL---QQFSQMADQIIDL-QSQILLPGFVNTHVHTS 90 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~-~~~~~~~~~v~I~~-G~I~~ig~~~~~~---~~~~~~~~~viD~-~G~~v~PGfID~H~H~~ 90 (478)
++.+++|+|..|++.+. ...++++++|+|+| |||++|++..+.+ ...+..+.++||+ +|++|+|||||+|+|+.
T Consensus 29 ~~~~~~~~g~~i~~~~~~~~~~~~~~~v~I~~~g~I~~vg~~~~~~~~~~~~~~~~~~viD~~~g~~v~PG~ID~H~H~~ 108 (476)
T 4aql_A 29 PPLAHIFRGTFVHSTWTCPMEVLRDHLLGVSDSGKIVFLEEASQQEKLAKEWCFKPCEIRELSHHEFFMPGLVDTHIHAS 108 (476)
T ss_dssp --CCEEEEEEEEECCSSCSCEEEEEEEEEECTTSBEEEEEEGGGHHHHHHHTTCCGGGCEECCTTCEEEECEEEEEEEGG
T ss_pred CCccEEEEccEEecCCCCceeEecCcEEEEecCCeEEEecCcchhhhhhhhccCCCceEEEcCCCCEEeCCeeccccchH
Confidence 45678999999998643 45678899999998 9999999875432 1112235689995 59999999999999999
Q ss_pred hhhhccccCCCCchHHhhhccccccCCCChHHHHHHHHH-HHHHHHhcCcceeecCCccCHHH---HHHHHHHhCCeEEE
Q 011766 91 QQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLL-CGIELIHSGVTCFAEAGGQHVSE---MAKAVELLGLRACL 166 (478)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~GvTtv~~~~~~~~~~---~~~~~~~~g~~~~~ 166 (478)
++.+++...+.++.+|+..+.|+.+..+.+++.+..... ...+++++||||+.+++..+... ..+.....|++...
T Consensus 109 ~~~~rg~~~d~~l~~wL~~~~~p~e~~~~~~~~~~~~~~~~~~e~l~~G~Tt~~~~~~~~~~~~~~~~~a~~~~G~r~~~ 188 (476)
T 4aql_A 109 QYSFAGSSIDLPLLEWLTKYTFPAEHRFQNIDFAEEVYTRVVRRTLKNGTTTACYFATIHTDSSLLLADITDKFGQRAFV 188 (476)
T ss_dssp GGGGTTSCCCSCHHHHHHHTHHHHHHGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhcCCCHHHHHHHhhhhHHHhcCCHHHHHHHHHHHHHHHHHCCeeEEEEecccCchHHHHHHHHHHHhCCEEEE
Confidence 999999999999999999999999888887775555554 44689999999999886655543 57778899999998
Q ss_pred ecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHH
Q 011766 167 VQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMARE 246 (478)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 246 (478)
+...++.+...+. + .......+. +.+++++++.....+.++..++++..++++++.++++.++|++
T Consensus 189 ~~~~~d~~~~~p~-~-~~~~~~~l~------------~~~~~i~~~~~~~~~~v~~~l~p~~~~~~s~e~l~~~~~~A~~ 254 (476)
T 4aql_A 189 GKVCMDLNDTFPE-Y-KETTEESIK------------ETERFVSEMLQKNYSRVKPIVTPRFSLSCSETLMGELGNIAKT 254 (476)
T ss_dssp ECEECSCCSSCTT-S-CCCHHHHHH------------HHHHHHHHHHHHTCSSEEECBEECCTTTSCHHHHHHHHHHHHH
T ss_pred eeccccCCCCCcc-c-ccCHHHHHH------------HHHHHHHHHhcCCCCceEEEEeCCcCCcCCHHHHHHHHHHHHH
Confidence 8877765432221 1 112222233 5666677766555678888899999999999999999999999
Q ss_pred cCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCC
Q 011766 247 FKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGF 325 (478)
Q Consensus 247 ~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~ 325 (478)
+|+++++|+.+...+...+...++....+++.+...+.+..+.++.|+.++++++++++++.++.+++||.+++.. .+.
T Consensus 255 ~g~~v~~H~~e~~~e~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~H~~~l~~~~~~~l~~~g~~v~~~P~sn~~l~~g~ 334 (476)
T 4aql_A 255 RDLHIQSHISENRDEVEAVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLSAEELNVFHERGASIAHCPNSNLSLSSGF 334 (476)
T ss_dssp TTCCEEEEESCSHHHHHHHHHHCTTSSSHHHHHHTTTCCSTTEEEEECTTCCHHHHHHHHHHTCEEEECHHHHHHTTCCC
T ss_pred cCCceEEEecCCHHHHHHHHHHhCCCCCHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHcCCEEEECchhhhhhCcch
Confidence 9999999999988888777777665446889999999999999999999999999999999999999999999877 778
Q ss_pred CcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccc
Q 011766 326 APIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGS 405 (478)
Q Consensus 326 ~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~ 405 (478)
.|++++++.|+++++|||+++ .++.+++.+++.+....+..... .....++|++++|+++|.|||+++|+++++|+
T Consensus 335 ~p~~~~~~~Gv~v~lGtD~~~-~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~l~~~~al~~aT~~~A~~lgl~~~~G~ 410 (476)
T 4aql_A 335 LNVLEVLKHEVKIGLGTDVAG-GYSYSMLDAIRRAVMVSNILLIN---KVNEKSLTLKEVFRLATLGGSQALGLDGEIGN 410 (476)
T ss_dssp CCHHHHHHTTCEEEECCCTTT-SSCCCHHHHHHHHHHHHHHHHHT---TSSSSCCCHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred HHHHHHHHCCCcEEEeCCCCC-CCCCCHHHHHHHHHHHHhhhhcc---cCCCCcCCHHHHHHHHHHHHHHHhCCCCCcce
Confidence 999999999999999999864 35688999998876554321110 11335799999999999999999999988999
Q ss_pred cccCccccEEEEcCCCCC----C-------CCcCChhhhhhhccCCCCeeEEEEccEEEEECCe
Q 011766 406 LEAGKKADMVVVDPFSWP----M-------VPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKK 458 (478)
Q Consensus 406 l~~G~~ADlvv~d~~~~~----~-------~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~ 458 (478)
|++||.|||||+|.+... . .+..||++.+++.....+|..|||+|++|++.+.
T Consensus 411 l~~G~~ADlvv~d~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~V~~v~v~G~~v~~~~~ 474 (476)
T 4aql_A 411 FEVGKEFDAILINPKASDSPIDLFYGDFFGDISEAVIQKFLYLGDDRNIEEVYVGGKQVVPFSS 474 (476)
T ss_dssp CCTTSBCCEEEECTTCTTCSCCCCTHHHHSSSTTHHHHHHHHHCCGGGEEEEEETTEEEECCC-
T ss_pred eCCCCCCCEEEEcCCCCCCccccccccccCCchhcHHHHHhhcCCCCCccEEEECCEEEecCCC
Confidence 999999999999998322 1 1246788889998888899999999999998754
|
| >2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II, amidohydrolase, sargasso SEA, enviro sample, structural genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-50 Score=403.59 Aligned_cols=441 Identities=24% Similarity=0.321 Sum_probs=302.7
Q ss_pred ccceeEEEecE-EEeeCCCCc-----eeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccc
Q 011766 17 SSSTMILHNAV-IVTMDKESR-----VFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTS 90 (478)
Q Consensus 17 ~~~~~~i~n~~-I~t~d~~~~-----~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~ 90 (478)
++++++|+|++ |+|++ ... .+.+++|+|+||||++|++..+ ..++++||++|++|+|||||+|+|+.
T Consensus 8 ~~~~~li~n~~~i~~~~-~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~------~~~~~viD~~G~~v~PG~ID~H~H~~ 80 (492)
T 2paj_A 8 TQPSTLIRNAAAIMTGG-RGTADDPSRVPGPDIRIVGDTIDAIGALAP------RPGETIVDATDCVIYPAWVNTHHHLF 80 (492)
T ss_dssp --CEEEEECBSEEBCCC-CSSSSSCSBCCCCCEEEETTEEEEESSCCC------CTTCEEEECBTCEEEECEECCCCCGG
T ss_pred CCCCeEEECCEEEEecC-CccccccceecccEEEEECCEEEEEcCCCC------CCCCeEEECCCcEEeeCccccccChh
Confidence 34689999999 99876 220 3467899999999999997542 12468999999999999999999998
Q ss_pred hhhhcccc--CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC--------HHHHHHHHHHh
Q 011766 91 QQLAKGIA--DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH--------VSEMAKAVELL 160 (478)
Q Consensus 91 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~--------~~~~~~~~~~~ 160 (478)
....++.. .+.++.+|+....|+....+++++.+........+++++||||+++++... .....+.....
T Consensus 81 ~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~ 160 (492)
T 2paj_A 81 QSLLKGEPAGLDATLTPWLAATPYRFRALFDERRFRLAARIGLIELARSGCATVADHNYVYYPGMPFDSSAILFEEAEKL 160 (492)
T ss_dssp GGGCCSCC-----------------CGGGCCHHHHHHHHHHHHHHHHTTTEEEEEECCCCCCTTCSSCHHHHHHHHHHHT
T ss_pred hHhhcCccCCCCCCHHHHHHhcccchhhcCCHHHHHHHHHHHHHHHHhcCcEEEEechhhcccccccchHHHHHHHHHHc
Confidence 76655433 345677898887788777788888777777788899999999999976321 24455556677
Q ss_pred CCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCC-CCeEEEEecccc-ccCCHHHHH
Q 011766 161 GLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAAD-GRIRIWFGIRQI-MNATDRLLL 238 (478)
Q Consensus 161 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~l~ 238 (478)
+++.+.....++.... ........... ...........++++.+..... +.++....++.. +..+++.+.
T Consensus 161 g~r~~~~~~~~~~~~~----~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 232 (492)
T 2paj_A 161 GLRFVLLRGGATQTRQ----LEADLPTALRP----ETLDAYVADIERLAARYHDASPRAMRRVVMAPTTVLYSISPREMR 232 (492)
T ss_dssp TCEEEEEECCCSCCCS----CSTTSCGGGCC----CCHHHHHHHHHHHHHHTCCCSTTCSEEEEECCTTTTTSSCHHHHH
T ss_pred CCEEEEEchhhccccc----ccccCCccccc----cCHHHHHHHHHHHHHHhccCCCCCceEEEEecccCCCCCCHHHHH
Confidence 8888765443322100 00000000000 0000001133444554443222 456666777776 778999999
Q ss_pred HHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccc
Q 011766 239 ETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPAS 318 (478)
Q Consensus 239 ~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~ 318 (478)
++++.+++.|+++++|+.+...+........+ ...++.+...+.+..+.++.|+.++++++++++++.|+.+++||.+
T Consensus 233 ~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g--~~~~~~~~~~g~~~~~~~i~H~~~~~~~~i~~l~~~gv~v~~~p~~ 310 (492)
T 2paj_A 233 ETAAVARRLGLRMHSHLSETVGYQDSAYSMYG--KSPVAFCGEHDWLGSDVWYAHLVKVDADEIALLAQTGTGVAHCPQS 310 (492)
T ss_dssp HHHHHHHHTTCEEEEECC-------------C--CCHHHHHHHTTCCSTTEEEESCCSCCHHHHHHHHHHTCEEEECHHH
T ss_pred HHHHHHHHcCCcEEEEeCCChHHHHHHHHHcC--CCHHHHHHHCCCCCCCcEEEEEecCCHHHHHHHHHcCCEEEECchh
Confidence 99999999999999999876544443333222 2356677777888888899999999999999999999999999998
Q ss_pred hhhc-cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccc---cccCC-----CCCCCCCCHHHHHHHH
Q 011766 319 AMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGRE---VFANG-----TTDPAALPAETVLRMA 389 (478)
Q Consensus 319 ~~~~-~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~ls~~~al~~~ 389 (478)
+.+. .+.+|++.+++.|+++++|||+++.+...+++.+++.+..+..... .+..+ ....+++|+++||+++
T Consensus 311 ~~~l~~~~~p~~~~~~~Gv~v~lgTD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~a 390 (492)
T 2paj_A 311 NGRLGSGICPVREMADAGVPVSIGVDGAASNEAADMISEVHMTWLAQRARLGMLAQPAYRGGSFEGGAGAASIAEVIHWG 390 (492)
T ss_dssp HHCC-----CCTTHHHHTCCEEECCCHHHHCSCCSHHHHHHHHHHHHHHTC-------------------CCHHHHHHHH
T ss_pred hcccCCCCCCHHHHHHCCCcEEEeCCCCCCCCCCCHHHHHHHHHHHhhhhcccccccccccccccCCcCcCCHHHHHHHH
Confidence 8765 4678999999999999999998654445789998887665433210 00000 0123569999999999
Q ss_pred hHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHH
Q 011766 390 TINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQ 469 (478)
Q Consensus 390 T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~ 469 (478)
|.|||+++|++ ++|+|++||+|||||+|.++++..|..||+..+.+.....+|..||++|++||++|+++..+.+++.+
T Consensus 391 T~~~A~~lgl~-~~Gsl~~Gk~ADlvvld~~~~~~~~~~~p~~~i~~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~~~ 469 (492)
T 2paj_A 391 TAGGARVMGLD-EVGKVAVGYAADIAVYRLDDPRYFGLHDPAIGPVASGGRPSVMALFSAGKRVVVDDLIEGVDIKELGG 469 (492)
T ss_dssp THHHHHHHTCT-TSSCCSTTSBCCEEEEECCSGGGTTCSSGGGHHHHSCSCCEEEEEEETTEEEEETTBCTTCCHHHHHH
T ss_pred HHHHHHHhCCC-CccccCCCCccCEEEEeCCCcccCCccCHHHHHHhcCCCCCceEEEECCEEEEECCeeccCCHHHHHH
Confidence 99999999997 78999999999999999997666667788888877666678999999999999999999999999998
Q ss_pred HHHHHh
Q 011766 470 LQDKLL 475 (478)
Q Consensus 470 ~~~~~~ 475 (478)
+.++..
T Consensus 470 ~~~~~~ 475 (492)
T 2paj_A 470 EARRVV 475 (492)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
|
| >4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-49 Score=391.66 Aligned_cols=422 Identities=17% Similarity=0.142 Sum_probs=322.9
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~ 96 (478)
++++++++|+.+. + ..+++++|+|+||||++|++..+ .++||++|++|+|||||+|+|+.+..+++
T Consensus 10 ~m~~l~~~~~~~~--~---~~~~~~~v~I~~g~I~~Ig~~~~---------~~~iD~~g~~v~PGlID~H~H~~~~~~rg 75 (458)
T 4f0l_A 10 SQHFIHARQALLP--D---GWAENVRIGIAGGVICSIETGVL---------AGPDDERQSVVVAGMANLHSHAFQYGMAG 75 (458)
T ss_dssp -CEEEEEEEEEET--T---EEEEEEEEEEETTEEEEEECSCC---------CCTTCEEEEEEEECEEEEEECGGGGGGTT
T ss_pred chhHhhhcceecc--C---ccccCceEEEECCEEEEEeCCCc---------cccccCCCCEEccCceecccchhhhhhcc
Confidence 3567888888663 2 45788999999999999998532 35799999999999999999999988887
Q ss_pred ccC-----CCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC--------------HHHHHHHH
Q 011766 97 IAD-----DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH--------------VSEMAKAV 157 (478)
Q Consensus 97 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~--------------~~~~~~~~ 157 (478)
... +.++.+|+. ..|+....+++++.+........+++++|||++.++...+ .....+..
T Consensus 76 ~~~~~~~~~~~~~~w~~-~~~~~~~~~~~e~~~~~~~~~~~e~l~~GvTtv~d~~~~~~~~~g~~~~~~~~~~~~~~~a~ 154 (458)
T 4f0l_A 76 LAERRGPSADSFWSWRE-IMYKFALTMTPEQAEAVALRLYVDMLEAGFTRVGEFHYLHHDCDGTPYANLSEMADRIAAAA 154 (458)
T ss_dssp SSCBCCSCSSTTHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHTTEEEEEEEECCCSCTTSCCCSSTTHHHHHHHHHH
T ss_pred cccccccCCCcHHHHHH-HhhhhhhhCCHHHHHHHHHHHHHHHHhcCCcEEEeeeeeccccccccccchhhhHHHHHHHH
Confidence 654 677888975 4566667788888888888899999999999999853211 34667788
Q ss_pred HHhCCeEEEecccccCCCC--CCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHH
Q 011766 158 ELLGLRACLVQSTMDCGEG--LPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDR 235 (478)
Q Consensus 158 ~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (478)
...|++.......+..+.. ..+............ .......+..+.+.. .+.+.+.++++..+.++++
T Consensus 155 ~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 224 (458)
T 4f0l_A 155 TTAGMGLTLLPVFYAHSGFGGAAANEGQRRFINDPE--------RFARLIEGCRKTLEG--FEGAVLGVAPHSLRAVTPD 224 (458)
T ss_dssp HHHTCEEEEEEEECCEEETTTEECCGGGTTTCCCHH--------HHHHHHHHHHHHHTT--CTTCEECBEECBTTTSCHH
T ss_pred HHcCCeEEEecchhccccccccCCchhhhhhhcCHH--------HHHHHHHHHHHHhcc--CCceEEEEecCCcCcCCHH
Confidence 8899999876655432210 000000000000000 000011222222222 3456666788888999999
Q ss_pred HHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEEC
Q 011766 236 LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHC 315 (478)
Q Consensus 236 ~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~ 315 (478)
.++.+.++|+ |+++++|+.+...+...+....+. ..++.+...+.+..+.++.|+.++++++++++++.++.+++|
T Consensus 225 ~l~~~~~~a~--g~~v~~H~~e~~~~~~~~~~~~g~--~~~~~l~~~g~l~~~~~~~H~~~~~~~~~~~l~~~g~~~~~~ 300 (458)
T 4f0l_A 225 ELDSVTQLLP--DAPVHIHVAEQVKEVEDCIAWSGK--RPVEWLLDHQDVTARWCLIHATHMSDEETKHMAKAGAIAGLC 300 (458)
T ss_dssp HHHHHTTSST--TSCEEEEESCSHHHHHHHHHHHSS--CHHHHHHHHSCCCTTEEEEECCSCCHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHHhc--CCCEEEEeCCCHHHHHHHHHHhCC--CHHHHHHHcCCCCCCeEEEEeccCCHHHHHHHHHcCCeEEEC
Confidence 9999999998 999999999888777776665543 366788888999999999999999999999999999999999
Q ss_pred ccchhhc-cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHH
Q 011766 316 PASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGA 394 (478)
Q Consensus 316 p~~~~~~-~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA 394 (478)
|.++..+ .+..|++.++++|+++++|||.. +..+++.+++.+....+........+..+++++++++|+++|.|||
T Consensus 301 p~s~~~l~~~~~~~~~~~~~Gv~v~lgtD~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~T~~~A 377 (458)
T 4f0l_A 301 PVTEANLGDGTFNATEFAAAGGKFGIGSDSN---VLIGIGDELRQLEYSQRLYHRARNVLAANEGSTGRALFDGAVLGGN 377 (458)
T ss_dssp HHHHHHTTCCCCCHHHHHHTTCEEEECCBTT---SSCCHHHHHHHHHHHHHHHHTCSSCSCSTTSBHHHHHHHHHHHHHH
T ss_pred ccccccccCCCccHHHHHHCCCeEEEECCCC---CCCCHHHHHHHHHHHHhhhccCccccCCcccCCHHHHHHHHHHHHH
Confidence 9998877 67899999999999999999953 3568999988776544322111111223457999999999999999
Q ss_pred HHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHHHHHH
Q 011766 395 KSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKL 474 (478)
Q Consensus 395 ~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~ 474 (478)
+++|+ ++|+|++||.|||||+|.+++...+..|+++.+++.... +|..||++|++||++|++ ++.+++.+.+++.
T Consensus 378 ~~lg~--~~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~-~v~~v~v~G~~v~~~g~~--~d~~~i~~~~~~~ 452 (458)
T 4f0l_A 378 IAMGR--PEDGLKKGASADFVSLDVERLPHAKGDVVLDGWIFAGRA-HVCDVWVRGVKQVEGGRH--RLRDEAERAFQKA 452 (458)
T ss_dssp HHTTC--TTCSSSTTSBCCEEEEECTTSTTCCHHHHHHHHHHTSCC-EEEEEEETTEEEEETTEE--TTHHHHHHHHHHH
T ss_pred HHhCC--CCCcCCCCCcCCEEEEeCCCCccCCcccHHHhCeEcCCC-CceEEEECCEEEEECCEe--CCHHHHHHHHHHH
Confidence 99999 479999999999999999987777778888888888777 999999999999999998 5788888877765
Q ss_pred h
Q 011766 475 L 475 (478)
Q Consensus 475 ~ 475 (478)
.
T Consensus 453 ~ 453 (458)
T 4f0l_A 453 L 453 (458)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3hpa_A Amidohydrolase; signature of Zn ligands, structural genomics, NYSGXRC, target 9236E, PSI-2, protein structure initiative; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-48 Score=385.11 Aligned_cols=440 Identities=27% Similarity=0.441 Sum_probs=316.0
Q ss_pred CCCCCCCccceeEEEecEE-EeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccc
Q 011766 10 SSSGSLGSSSTMILHNAVI-VTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88 (478)
Q Consensus 10 ~~~~~~~~~~~~~i~n~~I-~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H 88 (478)
+|..+...+.+++|+|++| +|+|+..+++++++|+|+||||++||+..+. +..+++|||++|++|+|||||+|+|
T Consensus 20 ap~~~~~~p~~llI~na~vi~T~D~~~~vi~~gdV~I~dgrI~aVG~~~~~----~~~~~~vIDa~G~~v~PG~ID~H~H 95 (479)
T 3hpa_A 20 APNTSSSRPKTLLVKHADVLVTMDDTRRELRDAGLYIEDNRIVAVGPSAEL----PETADEVLDLRGHLVIPGLVNTHHH 95 (479)
T ss_dssp ---------CEEEEEEEEEEECCCTTCCEEEEEEEEEETTEEEEEEEGGGS----CSCCSEEEECTTEEEEECEEECCCC
T ss_pred CCCCCCCCCCCEEEECCEEEEeeCCCCCEEcCcEEEEECCEEEEEeCCccC----CCCCCeEEECCCCEEeeCceeHhhC
Confidence 4444555667999999985 5788877889999999999999999986653 3346789999999999999999999
Q ss_pred cchhhhcccc--CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCc-----cCHHHHHHHHHHhC
Q 011766 89 TSQQLAKGIA--DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-----QHVSEMAKAVELLG 161 (478)
Q Consensus 89 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~-----~~~~~~~~~~~~~g 161 (478)
+.++..++.. .+.++.+|+... ++.......+..+........+++..|+|++.+... .............+
T Consensus 96 ~~~~~~~g~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g 174 (479)
T 3hpa_A 96 MYQSLTRAVPAAQNAELFGWLTNL-YKIWAHLTPEMIEVSTLTAMAELLQSGCTTSSDHLYIYPNGSRLDDSIGAAQRIG 174 (479)
T ss_dssp GGGGGSCSCTTTTTCCHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHTTTEEEEECCBCCCCTTCCHHHHHHHHHHHT
T ss_pred cchhcccccccCCCcchHHHHhhh-hhhhhhcCHHHHHHHHHHHHHHHHHhCCceecceeeeccchhhHHHHHHHHHHhc
Confidence 9888777654 355677887543 333445666666667777888999999999988542 23455566677788
Q ss_pred CeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCC-CCCCeEEEEeccccccCCHHHHHHH
Q 011766 162 LRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHA-ADGRIRIWFGIRQIMNATDRLLLET 240 (478)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (478)
++.................... ..... .........+....+... ..........++.....+.+.+.++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (479)
T 3hpa_A 175 MRFHASRGAMSVGQRDGGLPPD-SVVER--------EPDILRDTQRLIETYHDEGRYAMLRVVVAPCSPFSVSRDLMRDA 245 (479)
T ss_dssp CEEEEEEEECC-------------------------CHHHHHHHHHHHHHHCCCSTTCSEEEEEEESCTTTSCHHHHHHH
T ss_pred chhhhhhheeeccccccCCCch-hhhhh--------hhhHHHHHHHHHHHhhhhcccccceeEecccccccCCHHHHHHH
Confidence 8776554333222110000000 00000 000011233333443332 2344555567777788899999999
Q ss_pred HHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchh
Q 011766 241 RDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAM 320 (478)
Q Consensus 241 ~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~ 320 (478)
...+.+.++.+++|......+........+ ....+.....+....+..+.|+.++.+.++.++++.+.....+|.++.
T Consensus 246 ~~~a~~~g~~~~~h~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~p~~~~ 323 (479)
T 3hpa_A 246 AVLAREYGVSLHTHLAENVNDIAYSREKFG--MTPAEYAEDLGWVGHDVWHAHCVQLDDAGIGLFARTGTGVAHCPCSNM 323 (479)
T ss_dssp HHHHHHHTCEEEEEESCSHHHHHC---------CHHHHHHHTTCCSTTEEEEECTTCCHHHHHHHHHHTCEEEECHHHHH
T ss_pred HHHHHhcCCeEEeecccchHHHHHHHHHcC--CchHHHHhhhccccccceeeeeEecchhHHHHHHhcCCceeecccccc
Confidence 999999999999999876654433322222 235667777788888899999999999999999999999999998876
Q ss_pred hc-cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCC
Q 011766 321 RM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLW 399 (478)
Q Consensus 321 ~~-~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl 399 (478)
.. .+..+.+.+.+.|+++++|||.........+..+++.+....... ....++|++++++++|.|||++||+
T Consensus 324 ~~~~~~~~~~~~~~~~~~v~~gtD~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ls~~eal~~~T~~~A~~lgl 396 (479)
T 3hpa_A 324 RLASGIAPVKKMRLAGVPVGLGVDGSASNDGAQMVAEVRQALLLQRVG-------FGPDAMTAREALEIATLGGAKVLNR 396 (479)
T ss_dssp HTTCCCCCHHHHHHHTCCEEECCCCTTSSCCCCHHHHHHHHHHHHHHH-------HCTTSCCHHHHHHHTTHHHHHHHTC
T ss_pred ccccCccchhHHHhcCCcEEeeccccccCCCccHHHHHHHHHHHHhhh-------ccccCCCHHHHHHHHHHHHHHHhCC
Confidence 65 678899999999999999999877766666777666554433211 1234699999999999999999999
Q ss_pred CCCccccccCccccEEEEcCCC-CCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHHHHHH
Q 011766 400 DNDIGSLEAGKKADMVVVDPFS-WPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKL 474 (478)
Q Consensus 400 ~~~~G~l~~G~~ADlvv~d~~~-~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~ 474 (478)
+ ++|+|++||+|||||||.+. ....+..||++.+++.. ..+|.+|||||++||+||++++++.++++++.+++
T Consensus 397 ~-~~G~I~~G~~ADlvv~D~~~~~~~~~~~dp~~~lv~~~-~~~v~~tiV~G~~V~~dG~~~~~D~~~~~~~~~~~ 470 (479)
T 3hpa_A 397 D-DIGALKPGMAADFAAFDLRQPLFAGALHDPVAALVFCA-PSQTAYTVVNGKVVVREGRLATLDLPPVIERHNAL 470 (479)
T ss_dssp S-SSSSCSTTSBCCEEEEETTSGGGTTCTTSHHHHHHHSS-CCCCSEEEETTEEEEETTEECSSCHHHHHHHHHHH
T ss_pred C-CCccCCCCCcCCEEEEcCCCccccCCccCHHHHhhccC-CCCceEEEECCEEEEECCcCCCCCHHHHHHHHHHH
Confidence 5 58999999999999999984 44446789999887753 56899999999999999999999999999776654
|
| >2i9u_A Cytosine/guanine deaminase related protein; protein structure initiative II (PSI-II), amidohydrol guanine deaminase; HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=379.43 Aligned_cols=417 Identities=21% Similarity=0.293 Sum_probs=298.6
Q ss_pred CccceeEEEecEEEeeC-CCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhh
Q 011766 16 GSSSTMILHNAVIVTMD-KESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLA 94 (478)
Q Consensus 16 ~~~~~~~i~n~~I~t~d-~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~ 94 (478)
..+.+++|+|++|++++ +...++.+++|+|+||||++|++.... +..++++||++|++|+|||||+|+|+....+
T Consensus 6 ~~m~~~li~~~~v~~~~~~~~~~~~~~~v~I~~g~I~~ig~~~~~----~~~~~~viD~~G~~v~PGlID~H~H~~~~~~ 81 (439)
T 2i9u_A 6 KDINLKIFKGNLIFTKTSDKFTIMKDSYIVVIDGKIASVSSNLPD----KYKGNPIIDFRNNIIIPGMNDLHAHASQYKN 81 (439)
T ss_dssp ---CEEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEESSCCG----GGTTSCEEEEEEEEEEECEEEEEEEGGGGGG
T ss_pred CCcccEEEEeeEEEecCCccceEEeccEEEEECCEEEEecccccc----cCCCceEEcCCCeEEEecceecccccchHhh
Confidence 34568899999999876 223456788999999999999964321 1124579999999999999999999988776
Q ss_pred ccccCCCCchHHhhhccccccCCC-ChHHHHHHHHHHHHHHHhcCcceeecCCccCH---HHHHHHHHHhCCeEEEeccc
Q 011766 95 KGIADDVDLMTWLHDRIWPYESNM-TEEDSYISTLLCGIELIHSGVTCFAEAGGQHV---SEMAKAVELLGLRACLVQST 170 (478)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~---~~~~~~~~~~g~~~~~~~~~ 170 (478)
++...+.++.+|+....|+.+..+ +.++.+........+++++||||+++++.... ....+.....|++.+.+...
T Consensus 82 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~ 161 (439)
T 2i9u_A 82 LGIGMDKELLPWLNNYTFPEEAKFLNVDYAKKTYGRLIKDLIKNGTTRVALFATLHKDSTIELFNMLIKSGIGAYVGKVN 161 (439)
T ss_dssp TTCCCSSCHHHHHHHTHHHHHHGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEECEE
T ss_pred hCCcCCCCHHHHHHhcccchhhccCCHHHHHHHHHHHHHHHHhcCceEEEEccccccchHHHHHHHHHHcCCEEEEEeee
Confidence 665556678888876555443333 33444445555678899999999999765443 34556667788887654433
Q ss_pred ccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCc
Q 011766 171 MDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTG 250 (478)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 250 (478)
+... .+..+. ....... .+..+.++++... .+.++..+.++..+.++++.+.++++.|++.|++
T Consensus 162 ~~~~--~p~~~~-~~~~~~~------------~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~ 225 (439)
T 2i9u_A 162 MDYN--CPDYLT-ENYITSL------------NDTEEIILKYKDK-SNIVKPIITPRFVPSCSNELMDGLGKLSYKYRLP 225 (439)
T ss_dssp CCSS--CCTTSC-CCHHHHH------------HHHHHHHHHHTTT-CSSEEECBEECCGGGCCHHHHHHHHHHHHHHTCC
T ss_pred cccc--CCcccc-hhHHHHH------------HHHHHHHHHHhCC-CCceEEEEecCCcCcCCHHHHHHHHHHHHhcCCc
Confidence 3221 111000 0000011 1345555555432 3456665666666677899999999999999999
Q ss_pred eeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCC-CCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCCCcH
Q 011766 251 IHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQ-NNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPI 328 (478)
Q Consensus 251 v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~ 328 (478)
+++|+.+...+........+.....++.+...+... .+.++.|+.++++++++++++.|+.+++||.++... .+.+|+
T Consensus 226 v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~H~~~~~~~~~~~l~~~g~~~~~~p~~~~~l~~~~~~~ 305 (439)
T 2i9u_A 226 VQSHLSENLDEIAVVKSLHKKSNFYGEVYDKFGLFGNTPTLMAHCIHSSKEEINLIKRNNVTIVHCPTSNFNLGSGMMPV 305 (439)
T ss_dssp EEEEESCCHHHHHHHHHHCTTCSSHHHHHHHTTCSSSSCEEEEECCSCCHHHHHHHHHTTCEEEECHHHHHHTTCCCCCH
T ss_pred EEEeecCChHHHHHHHHHhCCCCCHHHHHHHcCCCCCCCeEEEEEecCCHHHHHHHHHcCCEEEECccchhhcccccCCH
Confidence 999998876555555544443223566677778777 788999999999999999999999999999988765 467899
Q ss_pred HHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCcccccc
Q 011766 329 KEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEA 408 (478)
Q Consensus 329 ~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~ 408 (478)
+.+++.|+++++|||+++ ....+++.+++.+........... .....++|++++++++|.|||+++| ++|+|++
T Consensus 306 ~~~~~~Gv~~~lgtD~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ls~~~al~~~T~~~A~~lg---~~Gsl~~ 379 (439)
T 2i9u_A 306 RKYLNLGINVVLGSDISA-GHTCSLFKVIAYAIQNSKIKWQES--GKKDMFLSTSEAFYMATKKGGSFFG---KVGSFEE 379 (439)
T ss_dssp HHHHHTTCEEEECCCBTT-BCCSCHHHHHHHHHHHHHHHHHHT--TSCSCCCCHHHHHHHHTHHHHTTTS---SCSSCST
T ss_pred HHHHHCCCcEEEecCCCC-CCCcCHHHHHHHHHHHhccccccc--cCCCCCCCHHHHHHHHHHHHHHHhc---cCCccCC
Confidence 999999999999999866 345789998887665432110000 1133579999999999999999999 4799999
Q ss_pred CccccEEEEcCCCCCCC--CcCChhhhhhhccCCCCeeEEEEccEEEEECCe
Q 011766 409 GKKADMVVVDPFSWPMV--PVHDRITSLVYCMRTENVVSVMCNGQWVMKNKK 458 (478)
Q Consensus 409 G~~ADlvv~d~~~~~~~--~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~ 458 (478)
||+|||||+|.++++.. +..||+..+++.....+|..||++|++||++++
T Consensus 380 G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~~~ 431 (439)
T 2i9u_A 380 GYDFDALVINDSNLYPEDYDLTERLERFIYLGDDRNIMKRYVCGNEIFGPKF 431 (439)
T ss_dssp TCBCCEEEECCTTSCGGGSCHHHHHHHHHHHCCGGGEEEEEETTEEEC----
T ss_pred CCccCEEEEeCCCccccCCCccCHHHHheecCCCCCeeEEEECCEEEeeCCC
Confidence 99999999999976554 345666777666666799999999999998775
|
| >2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-47 Score=378.32 Aligned_cols=418 Identities=21% Similarity=0.319 Sum_probs=304.4
Q ss_pred eeEEEecEEEeeCCC-----------CceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccc
Q 011766 20 TMILHNAVIVTMDKE-----------SRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88 (478)
Q Consensus 20 ~~~i~n~~I~t~d~~-----------~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H 88 (478)
.++|++|+|+++.++ ..++.+++|+|+||||++||+..+.+..+ .++++||++|++|+|||||+|+|
T Consensus 4 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~V~I~~G~I~~Vg~~~~~~~~~--~~~~viD~~G~~v~PG~ID~H~H 81 (475)
T 2ood_A 4 TTVGIRGTFFDFVDDPWKHIGNEQAAARFHQDGLMVVTDGVIKAFGPYEKIAAAH--PGVEITHIKDRIIVPGFIDGHIH 81 (475)
T ss_dssp CEEEEEEEEEEESSCGGGSTTCGGGGEEEEEEEEEEEESSBEEEEEEHHHHHHHS--TTCEEEEEEEEEEEECEEEEEEE
T ss_pred cceEEEEEEEecCCccccccccCCCcceEEECCEEEEECCEEEEEeChhhhcccc--CCCeEEeCCCcEEecceecCccc
Confidence 457889999987541 23567899999999999999754332111 35689999999999999999999
Q ss_pred cchhhhccccCCCCchHHhhhccccccCCC-ChHHHHHHHHHHHHHHHhcCcceeecCCccCH---HHHHHHHHHhCCeE
Q 011766 89 TSQQLAKGIADDVDLMTWLHDRIWPYESNM-TEEDSYISTLLCGIELIHSGVTCFAEAGGQHV---SEMAKAVELLGLRA 164 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~---~~~~~~~~~~g~~~ 164 (478)
+.+..+++.. +.++.+|+....|+.+..+ +.++.+........+++++||||+++++.... ....+..+..|++.
T Consensus 82 l~~~~~~g~~-~~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~g~r~ 160 (475)
T 2ood_A 82 LPQTRVLGAY-GEQLLPWLQKSIYPEEIKYKDRNYAREGVKRFLDALLAAGTTTCQAFTSSSPVATEELFEEASRRNMRV 160 (475)
T ss_dssp GGGTTCTTCC-SCCHHHHHHHHTHHHHGGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSSHHHHHHHHHHHHHHTCCE
T ss_pred HHhHhhcCCC-CCCHHHHHHHhccchhhccCCHHHHHHHHHHHHHHHHhcCceEEEEecccCchhHHHHHHHHHHcCCeE
Confidence 9877665543 3457788877665544433 34445555567788999999999999764433 34456667788887
Q ss_pred EEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHH
Q 011766 165 CLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMA 244 (478)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a 244 (478)
..+......+ .+..+ ......... ...++++++.. .+.++..+.++..+.++++.+.++++.+
T Consensus 161 ~~g~~~~~~~--~~~~~-~~~~~~~~~------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~e~l~~~~~~a 223 (475)
T 2ood_A 161 IAGLTGIDRN--APAEF-IDTPENFYR------------DSKRLIAQYHD--KGRNLYAITPRFAFGASPELLKACQRLK 223 (475)
T ss_dssp EECCEECCSS--SCTTT-CCCHHHHHH------------HHHHHHHHHTT--BTTEEEEEEECBGGGCCHHHHHHHHHHH
T ss_pred EEEeeecccC--CCccc-ccCHHHHHH------------HHHHHHHHhcc--CCceEEEEeccccCcCCHHHHHHHHHHH
Confidence 6443332211 11100 000001111 34455555533 3457766778888889999999999999
Q ss_pred HHc-CCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-
Q 011766 245 REF-KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM- 322 (478)
Q Consensus 245 ~~~-~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~- 322 (478)
++. |+++++|+.+...+.......++.....++.++..+.+..+.++.|+.++++++++++++.|+.+++||.++..+
T Consensus 224 ~~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~i~H~~~~~~~~i~~~~~~g~~~~~~P~~~~~l~ 303 (475)
T 2ood_A 224 HEHPDCWVNTHISENPAECSGVLVEHPDCQDYLGVYEKFDLVGPKFSGGHGVYLSNNEFRRMSKKGAAVVFCPCSNLFLG 303 (475)
T ss_dssp HHCTTSEEEEECSCCHHHHHHHHHHCTTCSSHHHHHHTTTCCSTTEEEECCTTCCHHHHHHHHHHTCEEEECHHHHHHTT
T ss_pred HhCCCCcEEEeeCCChHHHHHHHHHcCCCccHHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHHcCCEEEEChhhhhhcc
Confidence 999 999999999876655555554443344677788888888888999999999999999999999999999988765
Q ss_pred cCCCcHHHHHHCCCc--EEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCC----------CCCCCCCHHHHHHHHh
Q 011766 323 LGFAPIKEMLHADIC--VSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGT----------TDPAALPAETVLRMAT 390 (478)
Q Consensus 323 ~~~~~~~~~~~~gv~--v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ls~~~al~~~T 390 (478)
.+.+|++.+++.|++ +++|||+++. .+.+++.+++.+............+. ..+.++|++++++++|
T Consensus 304 ~~~~~~~~~~~~Gv~~~~~lgTD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~al~~~T 382 (475)
T 2ood_A 304 SGLFRLGRATDPEHRVKMSFGTDVGGG-NRFSMISVLDDAYKVGMCNNTLLDGSIDPSRKDLAEAERNKLSPYRGFWSVT 382 (475)
T ss_dssp CCCCCHHHHTCTTSCCEEEECCCBTTB-SCCCHHHHHHHHHHHHHHHHHHSSSSSCGGGCCHHHHHHTCCCHHHHHHHTT
T ss_pred cCcCCHHHHHhCCCCCcEEEEccCCCC-CCcCHHHHHHHHHHHhcccchhccCCcccccccccccccCCCCHHHHHHHHH
Confidence 678999999999999 9999998663 34678888877654322000000000 0014699999999999
Q ss_pred HHHHHHcCCCCCccccccCccccEEEEcCCCCCCCC------------------cCChhhhhhhccCCCCeeEEEEccEE
Q 011766 391 INGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVP------------------VHDRITSLVYCMRTENVVSVMCNGQW 452 (478)
Q Consensus 391 ~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~------------------~~d~~~~~~~~~~~~~v~~v~v~G~~ 452 (478)
.|||+++|+++++|+|++||+|||||+|.+++...+ ..+|+..+++.....+|..||++|++
T Consensus 383 ~~~A~~lgl~~~~GsL~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~s~~~~~~~~~p~~~~~~~~~~~~V~~t~v~G~~ 462 (475)
T 2ood_A 383 LGGAEGLYIDDKLGNFEPGKEADFVALDPNGGQLAQPWHQSLIADGAGPRTVDEAASMLFAVMMVGDDRCVDETWVMGKR 462 (475)
T ss_dssp HHHHHHTTCTTTSSSCCTTSBCCEEEECTTCSSTTHHHHHTTC--CCSCCSHHHHHHHHHHHHHHCCGGGEEEEEETTEE
T ss_pred HHHHHHhCCCCCceeeCCCCccCEEEEeCCCccccccccccccccccccccccchhhHHHHHHhhCCCCCeeEEEECCEE
Confidence 999999999888999999999999999999766432 23467777776677899999999999
Q ss_pred EEECCe
Q 011766 453 VMKNKK 458 (478)
Q Consensus 453 v~~~g~ 458 (478)
||++.+
T Consensus 463 v~~~~~ 468 (475)
T 2ood_A 463 LYKKSE 468 (475)
T ss_dssp EEECC-
T ss_pred EEECCC
Confidence 999876
|
| >1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-47 Score=374.56 Aligned_cols=394 Identities=27% Similarity=0.422 Sum_probs=299.5
Q ss_pred eEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCC
Q 011766 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (478)
Q Consensus 21 ~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~ 100 (478)
++|+|++|+|+++. . ..+++|+|+||||++|++.. .+++ ||++|++|+|||||+|+|+.....++...+
T Consensus 1 ~li~n~~v~~~~~~-~-~~~~~v~I~~g~I~~vg~~~--------~~~~-iD~~g~~v~PG~ID~H~H~~~~~~~~~~~~ 69 (406)
T 1p1m_A 1 MIIGNCLILKDFSS-E-PFWGAVEIENGTIKRVLQGE--------VKVD-LDLSGKLVMPALFNTHTHAPMTLLRGVAED 69 (406)
T ss_dssp CEEEEEEECCSTTS-C-CEEEEEEEETTEEEEEEESS--------CCCS-EECTTEEEEECEEEEEECGGGGGGTTSSCS
T ss_pred CEEEccEEEecCcc-c-cccceEEEECCEEEEeeCCC--------Ccce-ecCCCcEEeecccchhhccchhhhccccCC
Confidence 47999999987653 2 56789999999999999742 1346 999999999999999999988777766666
Q ss_pred CCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCHHHHHHHHHHhCCeEEEecccccCCCCCCCc
Q 011766 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPAS 180 (478)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 180 (478)
.++.+|+....|+.....+.++.+........+++++||||+++++. ......+.....|++.+.....++.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~-~~~~~~~~~~~~g~r~~~~~~~~~~~~----- 143 (406)
T 1p1m_A 70 LSFEEWLFSKVLPIEDRLTEKMAYYGTILAQMEMARHGIAGFVDMYF-HEEWIAKAVRDFGMRALLTRGLVDSNG----- 143 (406)
T ss_dssp CCHHHHHHTTHHHHHTTCCHHHHHHHHHHHHHHHHTTTEEEEEEEES-SHHHHHHHHHHHCCEEEEEEEECCBTT-----
T ss_pred CCHHHHHHhhhccchhcCCHHHHHHHHHHHHHHHHhcCcEEEEechh-CHHHHHHHHHHcCCEEEEEcccccCCC-----
Confidence 77889998888877777777777777777778899999999999753 345556666778888866544432210
Q ss_pred ccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChh
Q 011766 181 WAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 260 (478)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~ 260 (478)
.....+. ...+.++.+.... +.++....++..+.++++.+.++++.|++.|+++++|+.+...
T Consensus 144 ----~~~~~~~------------~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~ 206 (406)
T 1p1m_A 144 ----DDGGRLE------------ENLKLYNEWNGFE-GRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAPVTIHLYETSK 206 (406)
T ss_dssp ----BCTTHHH------------HHHHHHHHHTTGG-GTEEEEEEECCTTTSCHHHHHHHHHHHHHTTCCEEEEESCSTT
T ss_pred ----CHHHHHH------------HHHHHHHHhhCCC-CcEEEEEecCccCcCCHHHHHHHHHHHHHCCCcEEEEcCCCch
Confidence 0011111 2334455543322 4566666777777789999999999999999999999986533
Q ss_pred hhHHHhh--hcCCCCchHHHHhhhCCCCCCeeeeeec---cCChhHHHHHHhcCCeEEECccchhhc-cCCCcHHHHHHC
Q 011766 261 ENQVVMD--TRKVDHGTVTFLDKIEFLQNNLLSAHTV---WVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHA 334 (478)
Q Consensus 261 ~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~i~h~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~ 334 (478)
....... ..+ +...+... ..+.|+. +++++++++++ ..||..+++. .+..+++.+++.
T Consensus 207 ~~~~~~~~~~~g--------~~~~g~~~--~~~~H~~~~~~~~~~~~~~~~------~~~p~~~~~~~~~~~~~~~~~~~ 270 (406)
T 1p1m_A 207 EEYDLEDILNIG--------LKEVKTIA--AHCVHLPERYFGVLKDIPFFV------SHNPASNLKLGNGIAPVQRMIEH 270 (406)
T ss_dssp CCCCTHHHHTTT--------TTTSCEEE--EECTTCCGGGTTTTTTSSEEE------EECHHHHHHTTCCCCCHHHHHHT
T ss_pred HHHHHHHhhhCC--------HhHcCcce--eEeeeccCcccCCHHHHHHHH------HhCcHHHhhcCCCcCcHHHHHhC
Confidence 2221111 000 11122221 5789999 99988876544 7888877665 567899999999
Q ss_pred CCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccE
Q 011766 335 DICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADM 414 (478)
Q Consensus 335 gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADl 414 (478)
|+++++|||+++.+...+++.+++.+....... ...++|++++++++|.|||+++|+++ |+|++|++|||
T Consensus 271 Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ls~~~al~~~T~~~A~~lgl~~--G~l~~G~~ADl 340 (406)
T 1p1m_A 271 GMKVTLGTDGAASNNSLNLFFEMRLASLLQKAQ--------NPRNLDVNTCLKMVTYDGAQAMGFKS--GKIEEGWNADL 340 (406)
T ss_dssp TCEEEECCCCTTTTSCCCHHHHHHHHHHHHHTT--------CTTSSCHHHHHHHHTHHHHHHHTCSC--SSCCTTSBCCE
T ss_pred CCeEEEECCCCcCCCCCCHHHHHHHHHHHhccc--------CCCCCCHHHHHHHHHHHHHHHhCCCC--cccCCCCcccE
Confidence 999999999987655678999988877654321 13469999999999999999999964 99999999999
Q ss_pred EEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHHHHHHh
Q 011766 415 VVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLL 475 (478)
Q Consensus 415 vv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~ 475 (478)
||+|.++++..|..||+..+++.....+|..||++|++|| +|+++..+.+++.++.++..
T Consensus 341 vv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~-~g~~~~~d~~~~~~~~~~~~ 400 (406)
T 1p1m_A 341 VVIDLDLPEMFPVQNIKNHLVHAFSGEVFATMVAGKWIYF-DGEYPTIDSEEVKRELARIE 400 (406)
T ss_dssp EEEECCSGGGCSGGGHHHHHHHTCCSCCSEEEETTEEEEE-TTBCTTSCHHHHHHHHHHHH
T ss_pred EEEeCCccccCCccChHHHheEecCCCCceEEEECCEEEE-CCeeCCCCHHHHHHHHHHHH
Confidence 9999998777788888888877777789999999999999 99999999999998877654
|
| >3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-48 Score=379.00 Aligned_cols=400 Identities=19% Similarity=0.250 Sum_probs=304.8
Q ss_pred eEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCC
Q 011766 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (478)
Q Consensus 21 ~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~ 100 (478)
++|+|++|+++++ ++++++|+| ||+|++||+..+.+..+ .++++||++|++|+|||||+|+|+.++.+++....
T Consensus 2 ~~i~~~~v~~~~~---~~~~~~v~i-~g~I~~Vg~~~~~~~~~--~~~~vid~~g~~v~PGlId~H~H~~~~~~rg~~~~ 75 (427)
T 3v7p_A 2 RIIKPFAILTPQT---IIQDKAVAF-DKKIEAIDTVENLIKKY--PNAAVEHDENSLLLPGFANPHLHLEFSANKATLQY 75 (427)
T ss_dssp EEEEEEEEECSSS---EEESCEEEE-SSBEEEEECHHHHHHHC--TTSEEEEEEEEEEEECEEEEEECGGGTTCSSCSCC
T ss_pred EEEECCEEEcCCC---EEeCcEEEE-CCEEEEecChhhhcccc--CCceEEeCCCCEEecCEeecccCcchhhccccccc
Confidence 5799999998763 778999999 99999999866543322 35689999999999999999999999999988888
Q ss_pred CCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCHHHHHHHHHHhCCeEEEecccccCCCCCCCc
Q 011766 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPAS 180 (478)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 180 (478)
.++.+|+....++.+. +.+++.+........+++++|||++.++.... ...+.....|++.......+... ..
T Consensus 76 ~~l~~wl~~~~~~~~~-~~~~~~~~~~~~~~~e~l~~GvTtv~d~~~~~--~~~~a~~~~Gir~~~~~~~~~~~----~~ 148 (427)
T 3v7p_A 76 GDFIPWLYSVIRHRED-LLPLCDGACLEQTLSSIIQTGTTAIGAISSYG--EDLQACIDSALKVVYFNEVIGSN----AA 148 (427)
T ss_dssp SSHHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHTTEEEEEEEESSS--TTHHHHHHBSSEEEEEEEECBCC----GG
T ss_pred CCHHHHHHHHHHhHHh-cCHHHHHHHHHHHHHHHHHhCCEEEEEecCcH--HHHHHHHhcCCeEEEeccccCCC----hh
Confidence 8999999887766543 34444566667788899999999999975432 22567888999987665443221 10
Q ss_pred ccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChh
Q 011766 181 WAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 260 (478)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~ 260 (478)
. ...... +..+.++.......+.++..++++..++++++.+++++++|++.|+++++|+.+...
T Consensus 149 ~----~~~~~~------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~E~~~ 212 (427)
T 3v7p_A 149 T----ADVMYA------------SFLERFHQSKKHENERFKAAVAIHSPYSVHYILAKRALDIAKKYGSLVSVHFMESRA 212 (427)
T ss_dssp G----HHHHHH------------HHHHHHHHHHTTCBTTEEEEEEECCTTTBCHHHHHHHHHHHHHHTCCEEEEESCSHH
T ss_pred h----hhHHHH------------HHHHHHHHhhhccCCceEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeCCCHH
Confidence 0 000011 233334444444567788889999999999999999999999999999999999888
Q ss_pred hhHHHhhhcCC----------CCchHH-HHhhhCC-CCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc-cCCCc
Q 011766 261 ENQVVMDTRKV----------DHGTVT-FLDKIEF-LQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAP 327 (478)
Q Consensus 261 ~~~~~~~~~~~----------~~~~~~-~l~~~~~-~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~ 327 (478)
+.+.+....+. ...+.. .....+. +..+.++.|+.++++++++++++.++.+++||.+++.. .+.+|
T Consensus 213 e~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~H~~~~~~~~~~~l~~~g~~~~~~p~s~~~~~~~~~~ 292 (427)
T 3v7p_A 213 EREWLDKGSGEFAKFFKEFLNQTRPVNDTKSFLELFKELHTLFVHMVWANEEEIQTIASYNAHIIHCPISNRLLGNGVLD 292 (427)
T ss_dssp HHHHHHHSCSHHHHHHHHHTCCCSCSSCHHHHHHTTTTSEEEEEECTTCCHHHHHHHHHSEEEEEECHHHHHHTTCCCCC
T ss_pred HHHHHHHhcCcchhhhhhhccCCCcccCHHHHHhhhcCCCEEEEECCCCCHHHHHHHHHcCCEEEECHHHHHHhcCCCCC
Confidence 77665543320 001111 1111233 56788999999999999999999999999999999877 67889
Q ss_pred HHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccc
Q 011766 328 IKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLE 407 (478)
Q Consensus 328 ~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~ 407 (478)
++.+ +|+++++|||+...+++.+++.+++.+...... ....++++++++++|.+||+++|++ +|+|+
T Consensus 293 ~~~~--~Gv~v~lgtD~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~~~~~~~~~~t~~~a~~~g~~--~g~l~ 359 (427)
T 3v7p_A 293 LEKI--KSIPYAIATDGLSSNYSLNMYEELKAALFVHPN---------KEATTFAKELIIRATKAGYDALGFE--GGEIA 359 (427)
T ss_dssp TTTT--TTSCEEECCCCTTSCSCCCHHHHHHHHHHHSTT---------SCHHHHHHHHHHHHTHHHHHHHTCS--CSSCC
T ss_pred HHHH--CCCeEEEeCCCCCCCCCCCHHHHHHHHHHhccC---------CCcccCHHHHHHHHHHHHHHHhCCC--CceeC
Confidence 9988 999999999987666788999999988765421 1224678999999999999999994 79999
Q ss_pred cCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHH
Q 011766 408 AGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRG 465 (478)
Q Consensus 408 ~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~ 465 (478)
+|+.|||||+|.+.....+..+|.+.+.. ..+|..||++|++||++|+++.....
T Consensus 360 ~G~~Ad~~~~d~~~~~~~~~~~~~~~~~~---~~~v~~v~v~G~~v~~~g~~~~~~~~ 414 (427)
T 3v7p_A 360 VGKDADMQLIDLPEGLTNVEDLYLHVILH---TTKPKKVYIQGEEHVREAENLYFQSH 414 (427)
T ss_dssp TTSBCCEEEEECCTTCCCGGGHHHHHHHH---CSSCSEEEETTEEEEC---CCCBC--
T ss_pred CCCccCEEEEcCCCccCCCccchHHHhcc---cCCccEEEECCEEEEECCcccCCccc
Confidence 99999999999987666666666665443 47899999999999999999876654
|
| >3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family, N-formimino-L-glutamate iminohydrolas guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas aeruginosa} PDB: 3mdw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-47 Score=377.26 Aligned_cols=419 Identities=19% Similarity=0.236 Sum_probs=317.3
Q ss_pred EEecEEEeeCCCCceeecceEEE-ECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccC--
Q 011766 23 LHNAVIVTMDKESRVFRNGGVFV-VQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD-- 99 (478)
Q Consensus 23 i~n~~I~t~d~~~~~~~~~~v~I-~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~-- 99 (478)
+..+++++++ .++++++|+| +||+|++|++..+ ...++|++| +|+|||||+|+|+.++.+++...
T Consensus 4 ~~~~~~~~~~---~~~~~~~v~i~~~g~I~~ig~~~~--------~~~~~d~~g-~v~PGfId~H~H~~~~~~rg~~~~~ 71 (453)
T 3mdu_A 4 IFAERALLPE---GWARNVRFEISADGVLAEIRPDAN--------ADGAERLGG-AVLPGMPNLHSHAFQRAMAGLAEVA 71 (453)
T ss_dssp EEEEEEEETT---EEEEEEEEEECTTSBEEEEESSCC--------CTTSEECSS-CEEECEEEEEECGGGGGGTTTTCCC
T ss_pred cchhheecCC---ceecCeEEEEecCCEEEEecCCCC--------cccccccCC-cccccceecccchHHHhhccccccc
Confidence 4456667543 4778999999 8999999998643 224679999 99999999999999999988764
Q ss_pred ---CCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC--------------HHHHHHHHHHhCC
Q 011766 100 ---DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH--------------VSEMAKAVELLGL 162 (478)
Q Consensus 100 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~--------------~~~~~~~~~~~g~ 162 (478)
+.++.+|+.. +|+....+++++.+........+++++||||+.++...+ .....+.....|+
T Consensus 72 ~~~~~~l~~wl~~-~~~~~~~~~~e~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~Gi 150 (453)
T 3mdu_A 72 GNPNDSFWTWREL-MYRMVARLSPEQIEVIACQLYIEMLKAGYTAVAEFHYVHHDLDGRSYADPAELSLRISRAASAAGI 150 (453)
T ss_dssp SSTTCCHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHHTEEEEEEEECCCSCTTSCCCSSTTHHHHHHHHHHHHHTC
T ss_pred cCCCCcHHHHHHH-HhhhhhhCCHHHHHHHHHHHHHHHHHcCCcEEEEeeEeccccccccccchhhHHHHHHHHHHHhCC
Confidence 4678899754 577788889999999999999999999999999852211 3466778889999
Q ss_pred eEEEecccccCCCC--CCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHH
Q 011766 163 RACLVQSTMDCGEG--LPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLET 240 (478)
Q Consensus 163 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (478)
+.......++.... .++............ .......+....+... +. ...++++..+.++++.++++
T Consensus 151 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~--~~-~~~~~p~~~~~~~~e~l~~~ 219 (453)
T 3mdu_A 151 GLTLLPVLYSHAGFGGQPASEGQRRFINGSE--------AYLELLQRLRAPLEAA--GH-SLGLCFHSLRAVTPQQIATV 219 (453)
T ss_dssp EEEEEECBCCBSSTTTCBCCGGGGGGCCCHH--------HHHHHHHHHHHHHHHH--TC-EECEEEEETTTSCHHHHHHH
T ss_pred eEEEecchhccccccCCCCchhhhhccCCHH--------HHHHHHHHHHHHhhcC--CC-eEEEecCCCCcCCHHHHHHH
Confidence 99877655543211 111100000000000 0000112222222111 22 55578888899999999999
Q ss_pred HHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchh
Q 011766 241 RDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAM 320 (478)
Q Consensus 241 ~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~ 320 (478)
+++|+ .|+++++|+.+...+...+....+. ..++.+...+.+..+.++.||.++++++++++++.|+.+++||.+++
T Consensus 220 ~~~A~-~g~~v~~H~~e~~~e~~~~~~~~g~--~~v~~l~~~g~~~~~~~~~H~~~~~~~~i~~la~~g~~v~~~P~sn~ 296 (453)
T 3mdu_A 220 LAAGH-DDLPVHIHIAEQQKEVDDCQAWSGR--RPLQWLYENVAVDQRWCLVHATHADPAEVAAMARSGAVAGLCLSTEA 296 (453)
T ss_dssp HTSSC-TTSCEEEEESCSHHHHHHHHHHHSS--CHHHHHHHHSCCCTTEEEEECCSCCHHHHHHHHHHTCEEEECHHHHH
T ss_pred HHHHh-cCCCEEEEeCCCHHHHHHHHHHhCC--CHHHHHHHcCCCCCCeEEEEcCCCCHHHHHHHHHcCCEEEECchhHh
Confidence 99999 9999999999988877776665543 36788888899999999999999999999999999999999999998
Q ss_pred hc-cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccC-CCCCCCCCCHHHHHHHHhHHHHHHcC
Q 011766 321 RM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFAN-GTTDPAALPAETVLRMATINGAKSVL 398 (478)
Q Consensus 321 ~~-~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ls~~~al~~~T~~pA~~lg 398 (478)
.+ .+..|++.++++|+++++|||++. +.+++.+|+.+....+....... .+..+++++++++++++|.+||+++|
T Consensus 297 ~lg~g~~p~~~~~~~Gv~v~lgtD~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~~ 373 (453)
T 3mdu_A 297 NLGDGIFPATDFLAQGGRLGIGSDSHV---SLSVVEELRWLEYGQRLRDRKRNRLYRDDQPMIGRTLYDAALAGGAQALG 373 (453)
T ss_dssp HTTCCCCCHHHHHHTTCEEEECCBTCS---CCCHHHHHHHHHHHHHHHHTCSCCSCBTTBCCHHHHHHHHHHHHHHHHHT
T ss_pred hcCCCCCCHHHHHHCCCEEEEECCCCC---CCCHHHHHHHHHHHHhhhccCCccccCcccCCCHHHHHHHHHHHHHHHhC
Confidence 77 678999999999999999999643 46899988877654322111100 11233479999999999999999999
Q ss_pred CCCCccccccCccccEEEEcCCCCCCC--CcCChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHHHHHHh
Q 011766 399 WDNDIGSLEAGKKADMVVVDPFSWPMV--PVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLL 475 (478)
Q Consensus 399 l~~~~G~l~~G~~ADlvv~d~~~~~~~--~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~ 475 (478)
+ ++|+|++|+.|||||+|.+..... +..|+++.+++.....+|..||++|++||++|+++ +.+++.+.+++..
T Consensus 374 ~--~~G~l~~G~~AD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~--~~~~i~~~~~~~~ 448 (453)
T 3mdu_A 374 Q--PIGSLAVGRRADLLVLDGNDPYLASAEGDALLNRWLFAGGDRQVRDVMVAGRWVVRDGRHA--GEERSARAFVQVL 448 (453)
T ss_dssp S--SCSSCCTTSBCCEEEECTTCHHHHTCCHHHHHHHHHHHCCGGGEEEEEETTEEEEBTTBCT--THHHHHHHHHHHH
T ss_pred C--CCCccCCCCcCCEEEEeCCCccccCCCccChHHHheeeCCCCCeeEEEECCEEEEECCccC--CHHHHHHHHHHHH
Confidence 9 579999999999999999754322 55678888888777789999999999999999984 7788887777654
|
| >1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation change, D314G mutant, hydrolase; 1.12A {Escherichia coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A 1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A 3g77_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=341.16 Aligned_cols=378 Identities=15% Similarity=0.182 Sum_probs=259.7
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccc
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~ 97 (478)
+++++|+|++|++++ .+++|+|+||||++||+..+.+ ..++++||++|++|+|||||+|+|+....+++.
T Consensus 7 ~~~~li~n~~v~~~~------~~~~v~I~~g~I~~vg~~~~~~----~~~~~viD~~G~~v~PGlID~H~Hl~~~~~~~~ 76 (430)
T 1ra0_A 7 NALQTIINARLPGEE------GLWQIHLQDGKISAIDAQSGVM----PITENSLDAEQGLVIPPFVEPHIHLDTTQTAGQ 76 (430)
T ss_dssp -CCCEEEEEBCTTCC------SEEEEEEETTEEEEEEEESSCC----CCCTTEEECTTCEEESCEEEEEECTTTTTCTTS
T ss_pred CCcEEEEeeEecCCC------ceeEEEEECCEEEEeecCCCCC----CCCcceEccCCCEecccccccccchhhhhhcCC
Confidence 467899999999642 4569999999999999754321 134689999999999999999999987665554
Q ss_pred cC---CCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc-C-----HHHHHHHHHHhCCeEEEec
Q 011766 98 AD---DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-H-----VSEMAKAVELLGLRACLVQ 168 (478)
Q Consensus 98 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~-~-----~~~~~~~~~~~g~~~~~~~ 168 (478)
.. +.++.+|+.. .++....++.++.+........+++++||||+++++.. . .....+..+..........
T Consensus 77 ~~~~~~~~~~~~l~~-~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (430)
T 1ra0_A 77 PNWNQSGTLFEGIER-WAERKALLTHDDVKQRAWQTLKWQIANGIQHVRTHVDVSDATLTALKAMLEVKQEVAPWIDLQI 155 (430)
T ss_dssp SSCCSSCCHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHTTEEEEEEEEECCSTTCHHHHHHHHHHHHHTTTCEEEE
T ss_pred CcCCCCCCHHHHHHH-hHHhhhhcCHHHHHHHHHHHHHHHHhcCccEEeeccccCChHHHHHHHHHHHHHhhhhhEEEEE
Confidence 32 4567788754 34455666777777777778889999999999986532 1 1222222222121111110
Q ss_pred ccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEecccccc--CCHHHHHHHHHHHHH
Q 011766 169 STMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMN--ATDRLLLETRDMARE 246 (478)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~a~~ 246 (478)
..+.. .+. + . .. ...+.++++...+.+.+. ..++..+. .+++.+.++++.|++
T Consensus 156 ~~~~~-~~~---~----~---~~------------~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~l~~~~~~A~~ 210 (430)
T 1ra0_A 156 VAFPQ-EGI---L----S---YP------------NGEALLEEALRLGADVVG--AIPHFEFTREYGVESLHKTFALAQK 210 (430)
T ss_dssp EEECT-TCS---S----S---ST------------THHHHHHHHHHTTCSEEC--CCGGGSSSHHHHHHHHHHHHHHHHH
T ss_pred EecCC-ccc---c----c---Cc------------hHHHHHHHHHHhCCCeEe--eeecccccccccHHHHHHHHHHHHH
Confidence 00000 000 0 0 00 122223333222223222 22344444 678899999999999
Q ss_pred cCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChh-------HHHHHHhcCCeEEECccch
Q 011766 247 FKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHT-------EIGLLSRAGVKVSHCPASA 319 (478)
Q Consensus 247 ~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~-------~~~~~~~~~~~~~~~p~~~ 319 (478)
.|+++++|+.+.......... ..++.+...+. +.+..+.|+.+++++ +++++++.|+.+++||.++
T Consensus 211 ~g~~v~~H~~e~~~~~~~~~~------~~~~~~~~~g~-~~~~~i~H~~~~~~~~~~~~~~~i~~~~~~gv~v~~~p~~~ 283 (430)
T 1ra0_A 211 YDRLIDVHCDEIDDEQSRFVE------TVAALAHHEGM-GARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVANPLVN 283 (430)
T ss_dssp HTCEEEEEECCSSCTTCCHHH------HHHHHHHHHTC-GGGEEEEECGGGGGSCHHHHHHHHHHHHHHTCEEEECHHHH
T ss_pred cCCCEEEEECCCCchhHHHHH------HHHHHHHHhCC-CCCEEEEeccccccCChHhHHHHHHHHHHcCCEEEECchhh
Confidence 999999999765432211111 12344555554 677889999999875 8999999999999999876
Q ss_pred hhc----------cCCCcHHHHHHCCCcEEEcCCCCC----CCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHH
Q 011766 320 MRM----------LGFAPIKEMLHADICVSLGTDGAP----SNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETV 385 (478)
Q Consensus 320 ~~~----------~~~~~~~~~~~~gv~v~~gsD~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 385 (478)
... .+..+++.++++|+++++|||+++ .....+++.+++.+....... .++|++++
T Consensus 284 ~~~~~~~~~~p~~~~~~~~~~~~~~Gv~~~lgTD~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~a 353 (430)
T 1ra0_A 284 IHLQGRFDTYPKRRGITRVKEMLESGINVCFGHDGVFDPWYPLGTANMLQVLHMGLHVCQLM----------GYGQINDG 353 (430)
T ss_dssp HHHTTTTCCSSCCCCCCCHHHHHHTTCCEEECCBCSSBTTBSCCCCCHHHHHHHHHHHTTCC----------SHHHHHGG
T ss_pred hhhccccCCCCCcCCCCCHHHHHHCCCEEEEeCCCCcccCCCCCCCCHHHHHHHHHHHHccC----------CcccHHHH
Confidence 543 356789999999999999999864 224568899888776543210 13689999
Q ss_pred HHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeec
Q 011766 386 LRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILL 461 (478)
Q Consensus 386 l~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~ 461 (478)
++++|.|||+++|+++ |+|++|++|||||+|.+.+ .+.+. ...+|..||++|++||++++++.
T Consensus 354 l~~~T~~~A~~lg~~~--G~i~~G~~ADlvv~d~~~~--------~~~~~---~~~~v~~v~~~G~~v~~~~~~~~ 416 (430)
T 1ra0_A 354 LNLITHHSARTLNLQD--YGIAAGNSANLIILPAENG--------FDALR---RQVPVRYSVRGGKVIASTQPAQT 416 (430)
T ss_dssp GGGGTHHHHHHTTCSS--CSSCTTSBCCEEEESSSSH--------HHHHH---HTCCCSEEEETTEEEEECCCCCE
T ss_pred HHHHHHHHHHHhCCCC--cccCCCCcCCEEEEcCCCh--------hHHHh---ccCcceEEEECCEEEecCCccee
Confidence 9999999999999965 9999999999999998622 11111 24689999999999999998863
|
| >2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=328.30 Aligned_cols=378 Identities=22% Similarity=0.270 Sum_probs=241.5
Q ss_pred cceeEEEe-cEEEeeCCCC----------ceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccc
Q 011766 18 SSTMILHN-AVIVTMDKES----------RVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTH 86 (478)
Q Consensus 18 ~~~~~i~n-~~I~t~d~~~----------~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H 86 (478)
.++++|+| ++|+|+++.. ..+.+++|+|+||||++||+..+ ....+ .+++||++|++|+|||||+|
T Consensus 4 ~~d~li~n~g~I~t~~~~~~~~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~-~~~~~--~~~viD~~G~~v~PGfID~H 80 (421)
T 2bb0_A 4 QIDTILINIGQLLTMESSGPRAGKSMQDLHVIEDAVVGIHEQKIVFAGQKGA-EAGYE--ADEIIDCSGRLVTPGLVDPH 80 (421)
T ss_dssp EEEEEEEEEEEECCCCCSSCCCGGGGTCCCCEEEEEEEEETTEEEEEEETTT-TTTCE--EEEEEECTTCEEEECEEECC
T ss_pred cccEEEECCcEEEecCCCccccccccccccccccceEEEECCEEEEEecccc-cccCC--CCeEEeCCCCEeccCeeccC
Confidence 36899999 9999876532 34567899999999999997531 00001 25799999999999999999
Q ss_pred cccchhhhccccCCCCchHHhhhcccc--------------ccCCCChHHHHHHHHHHHHHHHhcCcceeecCCc--cCH
Q 011766 87 VHTSQQLAKGIADDVDLMTWLHDRIWP--------------YESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG--QHV 150 (478)
Q Consensus 87 ~H~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~--~~~ 150 (478)
+|+.....+. ..+..|+.+..+. .....+.+...........+++++|||++.+... ...
T Consensus 81 ~H~~~~~~~~----~~~~~~~~g~~~~~~~~~gggi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~ 156 (421)
T 2bb0_A 81 THLVFGGSRE----KEMNLKLQGISYLDILAQGGGILSTVKDTRAASEEELLQKAHFHLQRMLSYGTTTAEVKSGYGLEK 156 (421)
T ss_dssp BCCCCCSCCG----GGHHHHHTTCCHHHHHHTTCTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTEEEEEEECCSCCSH
T ss_pred cCccccccch----HHHHHHHhCCCHHHHhhcCCCcccchhhhhcCCHHHHHHHHHHHHHHHHhcCceEEEeccccCcCc
Confidence 9986532211 1122232211000 0011234444445556678899999999998532 111
Q ss_pred H---HHHHH----HHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCC-CCCCeEE
Q 011766 151 S---EMAKA----VELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHA-ADGRIRI 222 (478)
Q Consensus 151 ~---~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 222 (478)
. ...+. ....+++....... .+..+..+.. ....... ...+.+..+... ....++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~------------~~~~~~~~~~~~~~~~~~~~ 220 (421)
T 2bb0_A 157 ETELKQLRVAKKLHESQPVDLVSTFMG---AHAIPPEYQN-DPDDFLD------------QMLSLLPEIKEQELASFADI 220 (421)
T ss_dssp HHHHHHHHHHHHHHHHSSSEEEEEEEE---ESSCCGGGTT-CHHHHHH------------HHHTTHHHHHHTTCCSEEEE
T ss_pred cchHHHHHHHHHHHhhcCceEEEEeec---cccCChhhcc-cHHHHHH------------HHHHhhHHhhccCccccccc
Confidence 1 11222 22334544321110 0111111100 0000000 000011111111 1111211
Q ss_pred EEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHH
Q 011766 223 WFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEI 302 (478)
Q Consensus 223 ~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~ 302 (478)
.......+++.+.++++.|++.|+++++|+.+.... ...+.....+ ...+.|+.+++++++
T Consensus 221 ---~~~~~~~~~e~l~~~~~~a~~~g~~v~~H~~~~~~~------------~~~~~~~~~g----~~~~~H~~~~~~~~i 281 (421)
T 2bb0_A 221 ---FTETGVFTVSQSRRYLQKAAEAGFGLKIHADEIDPL------------GGAELAGKLK----AVSADHLVGTSDEGI 281 (421)
T ss_dssp ---BBCTTSBCHHHHHHHHHHHHHTTCEEEEEECSSSCC------------SHHHHHHHTT----CSEEEECTTCCHHHH
T ss_pred ---cCCcCCCCHHHHHHHHHHHHHCCCCEEEEecccccc------------CHHHHHHHcC----CcEEhhhhcCCHHHH
Confidence 122233578999999999999999999998754211 1222222322 235799999999999
Q ss_pred HHHHhcCCeEEECccchhhc--cCCCcHHHHHHCCCcEEEcCCCCCC-CCCcCHHHHHHHHHHHhcccccccCCCCCCCC
Q 011766 303 GLLSRAGVKVSHCPASAMRM--LGFAPIKEMLHADICVSLGTDGAPS-NNRMSIVDEMYLASLINKGREVFANGTTDPAA 379 (478)
Q Consensus 303 ~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~gv~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (478)
+++++.++.++.||.+++.. .+..+++.++++|+++++|||+++. .+..+++..++.+... ++
T Consensus 282 ~~~~~~g~~~~~~p~~~~~l~~~~~~~~~~~~~~Gv~v~lgtD~~~~~~~~~~~~~~~~~~~~~--------------~~ 347 (421)
T 2bb0_A 282 KKLAEAGTIAVLLPGTTFYLGKSTYARARAMIDEGVCVSLATDFNPGSSPTENIQLIMSIAALH--------------LK 347 (421)
T ss_dssp HHHHHHTCEEEECHHHHHHTTCCCCCCHHHHHHTTCCEEECCCBBTTTBCCCCHHHHHHHHHHH--------------SC
T ss_pred HHHHHcCCeEEECCchhhhhcccccchHHHHHHCCCeEEEeCCCCCCCCcccCHHHHHHHHhcc--------------cC
Confidence 99999999999999987654 4678999999999999999998652 3345788888765432 25
Q ss_pred CCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEEC-Ce
Q 011766 380 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKN-KK 458 (478)
Q Consensus 380 ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~-g~ 458 (478)
+|+++||+++|.|||+++|+++++|+|++||+|||||+|.+++. .+.+.....+|..||++|++||++ |+
T Consensus 348 ls~~eal~~~T~~~A~~lg~~~~~Gsl~~Gk~ADlvvld~~~~~---------~~~~~~~~~~v~~t~v~G~~v~~~~g~ 418 (421)
T 2bb0_A 348 MTAEEIWHAVTVNAAYAIGKGEEAGQLKAGRSADLVIWQAPNYM---------YIPYHYGVNHVHQVMKNGTIVVNREGA 418 (421)
T ss_dssp CCHHHHHHHTTHHHHHHTTCTTTSSCCSTTSBCCEEEESSSSTT---------HHHHSCSSCCEEEEEETTEEEEEC---
T ss_pred CCHHHHHHHHHHHHHHHhCccCCccccCCCCcCCEEEECCcccc---------cCHhHcCCCceEEEEECCEEEEeCCcc
Confidence 99999999999999999999988999999999999999997432 223334457899999999999986 66
Q ss_pred ee
Q 011766 459 IL 460 (478)
Q Consensus 459 ~~ 460 (478)
++
T Consensus 419 ~~ 420 (421)
T 2bb0_A 419 IL 420 (421)
T ss_dssp --
T ss_pred cc
Confidence 64
|
| >3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural GEN protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-42 Score=337.30 Aligned_cols=378 Identities=18% Similarity=0.153 Sum_probs=249.5
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccc
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~ 97 (478)
+++++|+|++|+++++ ..+..+++|+|+||||++|++... ...++++||++|++|+|||||+|+|+.....
T Consensus 3 ~~~~~i~n~~v~~~~~-~~~~~~~~v~I~~g~I~~vg~~~~-----~~~~~~viD~~G~~v~PGlID~H~H~~~~~~--- 73 (423)
T 3feq_A 3 LTITVLQGGNVLDLER-GVLLEHHHVVIDGERIVEVTDRPV-----DLPNAQAIDVRGKTVMPGFIDCHVHVLASNA--- 73 (423)
T ss_dssp -CEEEEEEEEEEETTT-TEEEEEEEEEEETTEEEEEECSCC-----CCSSCEEEECTTCEEEECEEEEEECTTCCSS---
T ss_pred ceEEEEEccEEEeCCC-CcccCCceEEEECCEEEEecCCCC-----CCCCCeEEeCCCCEECCCeeeeEeeecccCC---
Confidence 5689999999998764 356678899999999999998532 1246799999999999999999999965321
Q ss_pred cCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCHHHHHHHHHH---hCCeEEEecccccCC
Q 011766 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVEL---LGLRACLVQSTMDCG 174 (478)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~ 174 (478)
+.. ....++....+........+++++||||++++++... ...+..+. .|++.+.....+...
T Consensus 74 ----~~~---------~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~-~l~~~~~~~~~~g~r~~~~g~~~~~~ 139 (423)
T 3feq_A 74 ----NLG---------VNATQPNILAAIRSLPILDAMLSRGFTSVRDAGGADW-SLMQAVETGLVSGPRIFPSGKALSQT 139 (423)
T ss_dssp ----CHH---------HHHHSCHHHHHHTHHHHHHHHHHTTEEEEEECSSCCH-HHHHHHHTTSSCSCEEECCCSEEECT
T ss_pred ----Chh---------hhhcCCHHHHHHHHHHHHHHHHhCCeEEEEeCCCchH-HHHHHHHcCCCCCCeEEecCcccccC
Confidence 000 0112344455555566788899999999999876543 33333333 477776665554432
Q ss_pred CCCCCcccc-cCCcccCCCCCCccc---cccchhHHHHHHHhcCCCCCCeEEEEe--------ccccccCCHHHHHHHHH
Q 011766 175 EGLPASWAV-RTTDDCIQPDSSISF---NFVSSSQKELYAKHHHAADGRIRIWFG--------IRQIMNATDRLLLETRD 242 (478)
Q Consensus 175 ~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~ 242 (478)
.+....... .....+......... .....+..+.+++....+...++++.. ++....++++.+.++++
T Consensus 140 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~ik~~~~g~~~~~~~p~~~~~~~~e~l~~~~~ 219 (423)
T 3feq_A 140 GGHGDFRPRGDLLEPCSCCFRTGAIARVVDGVEGVRLAVREEIQKGATQIKIMASGGVASPTDPIANTQYSEDEIRAIVD 219 (423)
T ss_dssp TSTTCCCCC---CCCCCSSCCTTCSEEECCSHHHHHHHHHHHHHTTCSSEEEECBCCSSSSSCCTTSBCSCHHHHHHHHH
T ss_pred CCCccccccccccccccccccccccceecCCHHHHHHHHHHHHHcCCCEEEEeccCCcCCCCCCcccccCCHHHHHHHHH
Confidence 221111000 000000000000000 011224555566665566677876643 44556789999999999
Q ss_pred HHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEE--------
Q 011766 243 MAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH-------- 314 (478)
Q Consensus 243 ~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~-------- 314 (478)
.|++.|+++++|+.+..... ..++ .+ ...+.|+..++++.++++++.++.++.
T Consensus 220 ~A~~~g~~v~~H~~~~~~i~--------------~~l~-~g----~~~i~H~~~~~~~~~~~l~~~gv~~~pt~~~~~~~ 280 (423)
T 3feq_A 220 EAEAANTYVMAHAYTGRAIA--------------RAVR-CG----VRTIEHGNLVDEAAAKLMHEHGAFVVPTLVTYDAL 280 (423)
T ss_dssp HHHHTTCCEEEEEEEHHHHH--------------HHHH-HT----CCEEEEEEECCHHHHHHHHHHTCEEECCTHHHHHH
T ss_pred HHHHCCCeEEEEeCChHHHH--------------HHHH-cC----CCEEeccCcCCHHHHHHHHHCCCccccchHHHHHH
Confidence 99999999999998543211 1111 12 235899999999999999999998843
Q ss_pred ---------Cccchhhc-----cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCC
Q 011766 315 ---------CPASAMRM-----LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAAL 380 (478)
Q Consensus 315 ---------~p~~~~~~-----~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 380 (478)
+|..+.+. ....+++.++++|+++++|||++... ......+++... +.+
T Consensus 281 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~gTD~~~~~-~~~~~~e~~~~~----------------~~l 343 (423)
T 3feq_A 281 AKHGAEFGMPPESVAKVASVQQKGRESLEIYANAGVKMGFGSDLLGEM-HAFQSGEFRIRA----------------EVL 343 (423)
T ss_dssp HHHTGGGTCCTTTSSTHHHHHHHHHHHHHHHHHHTCCBCCCCCCCGGG-GGGTTHHHHHHH----------------TTS
T ss_pred HhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC-CcchHHHHHHHH----------------hhC
Confidence 23333222 14567899999999999999986321 123334443321 138
Q ss_pred CHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeee
Q 011766 381 PAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKIL 460 (478)
Q Consensus 381 s~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~ 460 (478)
|++|||+++|.|||+++|+++++|+|++||.|||||+|.|++. ++. .+.....+|..||++|++|+++++..
T Consensus 344 s~~eal~~aT~~~A~~lg~~~~~G~i~~G~~ADlvv~d~~p~~-----~~~---~~~~~~~~v~~v~~~G~~v~~~~~~~ 415 (423)
T 3feq_A 344 GNLEALRSATTVAAEIVNMQGQLGVIAVGAIADLVVLDGNPLE-----DIG---VVADEGARVEYVLQRGTLVKRQAAGR 415 (423)
T ss_dssp CHHHHHHTTTHHHHHHTTCBTTBSSCCTTSBCCEEEESSCTTT-----CGG---GTSSSTTSEEEEEETTEEEEEC----
T ss_pred CHHHHHHHHHHHHHHHhCCCCCceeECCCCcCCEEEECCChhh-----CHH---HHhccCCCceEEEECCEEEeCCcccc
Confidence 9999999999999999999988999999999999999998543 321 11112268999999999999999875
Q ss_pred cc
Q 011766 461 LL 462 (478)
Q Consensus 461 ~~ 462 (478)
..
T Consensus 416 ~~ 417 (423)
T 3feq_A 416 EG 417 (423)
T ss_dssp --
T ss_pred cc
Confidence 43
|
| >2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} PDB: 3mkv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=334.87 Aligned_cols=378 Identities=17% Similarity=0.198 Sum_probs=248.8
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~ 96 (478)
.+++++|+|++|+++++ ..+..+++|+|+||+|++|++... ...++++||++|++|+|||||+|+|+.....
T Consensus 2 ~m~~~~i~n~~i~~~~~-~~~~~~~~i~i~~g~I~~i~~~~~-----~~~~~~~iD~~g~~v~PGliD~H~H~~~~~~-- 73 (426)
T 2r8c_A 2 SLTTFLFRNGALLDPDH-PDLLQGFEILIEDGFIREVSDKPI-----KSSNAHVIDVKGKTIMPGLIDLHVHVVAIEF-- 73 (426)
T ss_dssp --CEEEEEEEEECCTTS-SSCEEEEEEEEESSBEEEEESSCC-----CCSSCEEEECTTCEEEECEEEEEECTTCCSS--
T ss_pred CcccEEEEeeEEEeCCC-CcccCCceEEEECCEEEEEcCCCC-----CCCCCeEEECCCCEEcCCeEeeeeccccccC--
Confidence 35679999999997654 345677899999999999998532 1246789999999999999999999965322
Q ss_pred ccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCHHHHHHHHHH---hCCeEEEecccccC
Q 011766 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVEL---LGLRACLVQSTMDC 173 (478)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~ 173 (478)
.+.. ...++....+........+++++||||++++++... ...+..+. .|++.+.....+..
T Consensus 74 -----~~~~---------~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~-~l~~~i~~~~~~gpri~~~g~~i~~ 138 (426)
T 2r8c_A 74 -----NLPR---------VATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGY-PFKQAVESGLVEGPRLFVSGRALSQ 138 (426)
T ss_dssp -----CHHH---------HHHSCHHHHHHHHHHHHHHHHHTTEEEEEECSSCCH-HHHHHHHTTSSCCCEEEECCSEEEC
T ss_pred -----Cchh---------hccCCHHHHHHHHHHHHHHHHhCCeEEEEeCCCchH-HHHHHHHcCCCCCCeEEecCCcccC
Confidence 0000 112344555666667788899999999999986543 33333333 46777766555433
Q ss_pred CCCCCCcccccC------CcccCCCCCCccc-cccchhHHHHHHHhcCCCCCCeEEEEe--------ccccccCCHHHHH
Q 011766 174 GEGLPASWAVRT------TDDCIQPDSSISF-NFVSSSQKELYAKHHHAADGRIRIWFG--------IRQIMNATDRLLL 238 (478)
Q Consensus 174 ~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~ 238 (478)
..+......... ...+......... .....+..+.+++....+...++++.. ++..+.++++.+.
T Consensus 139 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~ik~~~~G~~~~~~~p~~~~~~~~e~l~ 218 (426)
T 2r8c_A 139 TGGHADPRARSDYMPPDSPCGCCVRVGALGRVADGVDEVRRAVREELQMGADQIKIMASGGVASPTDPVGVFGYSEDEIR 218 (426)
T ss_dssp TTSTTCCCCCSSBCCCSCSSSSBCCTTCCEEECCSHHHHHHHHHHHHHHTCSSEEEECBCCSSSSSCCSSCBCSCHHHHH
T ss_pred CCCCcccccccccccccccccccccccccccccCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCCcccccCCHHHHH
Confidence 211111000000 0000000000000 001123444455444445567776543 4455678999999
Q ss_pred HHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEEC---
Q 011766 239 ETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHC--- 315 (478)
Q Consensus 239 ~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~--- 315 (478)
++++.|++.|+++++|+.+...... .++ .+ ...+.|+..++++.++++++.++.++.+
T Consensus 219 ~~~~~A~~~g~~v~~H~~~~~~i~~--------------al~-~G----~~~i~H~~~~~~~~~~~~~~~gv~~~pt~~~ 279 (426)
T 2r8c_A 219 AIVAEAQGRGTYVLAHAYTPAAIAR--------------AVR-CG----VRTIEHGNLIDDETARLVAEHGAYVVPTLVT 279 (426)
T ss_dssp HHHHHHHHTTCCEEEEECSHHHHHH--------------HHH-TT----CSEEEECTTCCHHHHHHHHHTTCEEECCTHH
T ss_pred HHHHHHHHcCCEEEEEeCChHHHHH--------------HHH-cC----CCEEecCCcCCHHHHHHHHHcCCeEeechHH
Confidence 9999999999999999986433211 111 11 2358999999999999999999988532
Q ss_pred --------------ccchhhc-----cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCC
Q 011766 316 --------------PASAMRM-----LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTD 376 (478)
Q Consensus 316 --------------p~~~~~~-----~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (478)
|..+... ....+++.++++|+++++|||+++.. ......+++..
T Consensus 280 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~Gv~v~lgTD~~~~~-~~~~~~e~~~~---------------- 342 (426)
T 2r8c_A 280 YDALASEGEKYGLPPESIAKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGEA-QRLQSDEFRIL---------------- 342 (426)
T ss_dssp HHHHHHHTTTTTCCHHHHTTSTTTGGGHHHHHHHHHHTTCEECCCCCCCGGG-GGGTTHHHHHH----------------
T ss_pred HHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCC-CcchHHHHHHH----------------
Confidence 2222221 23457889999999999999986431 12233343321
Q ss_pred CCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEEC
Q 011766 377 PAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKN 456 (478)
Q Consensus 377 ~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~ 456 (478)
.+.+|++|||+++|.|||+++|+++++|+|++||.|||||+|.|++. |+.. +.....+|..||++|++|+++
T Consensus 343 ~~~l~~~eal~~aT~~~A~~lg~~~~~G~i~~G~~ADlvvld~~p~~-----~~~~---~~~~~~~v~~v~~~G~~v~~~ 414 (426)
T 2r8c_A 343 AEVLSPAEVIASATIVSAEVLGMQDKLGRIVPGAHADVLVVDGNPLK-----SVDC---LLGQGEHIPLVMKDGRLFVNE 414 (426)
T ss_dssp TTTSCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEESSCTTT-----CGGG---TCSSSTTCCEEEETTEEEEET
T ss_pred HhcCCHHHHHHHHHHHHHHHhCCCCCCccCCCCCcCCEEEECCChHh-----CHHH---HhCcCCcceEEEECCEEEecc
Confidence 11399999999999999999999988999999999999999998543 3211 111126899999999999999
Q ss_pred Ceeec
Q 011766 457 KKILL 461 (478)
Q Consensus 457 g~~~~ 461 (478)
++..+
T Consensus 415 ~~~~~ 419 (426)
T 2r8c_A 415 LEGHE 419 (426)
T ss_dssp TC---
T ss_pred ccccc
Confidence 87643
|
| >2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-41 Score=327.17 Aligned_cols=370 Identities=18% Similarity=0.194 Sum_probs=250.1
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhh---
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLA--- 94 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~--- 94 (478)
+++++|+|++|+++ ... ++|+|+||||++|++..+. .+.++||++|++|+|||||+|+|+.+..+
T Consensus 4 ~~~~li~n~~v~~~--~~~----~~v~I~~g~I~~vg~~~~~------~~~~viD~~G~~v~PGlID~H~H~~~~~~~~~ 71 (403)
T 2qt3_A 4 DFDLIIRNAYLSEK--DSV----YDIGIVGDRIIKIEAKIEG------TVKDEIDAKGNLVSPGFVDAHTHMDKSFTSTG 71 (403)
T ss_dssp CEEEEEEEEEETTT--TEE----EEEEEETTEEEEEESSCCS------CEEEEEECTTCBEEECEEEEEECGGGTTTTCS
T ss_pred ccceEEEeeEecCC--Cee----EEEEEECCEEEEeecCCCC------CccceEcCCCCEecccceeeeeccchhhcccc
Confidence 46899999999953 222 6999999999999975421 13479999999999999999999987654
Q ss_pred ------cccc--CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc---C----HHHHHHHHHH
Q 011766 95 ------KGIA--DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ---H----VSEMAKAVEL 159 (478)
Q Consensus 95 ------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~---~----~~~~~~~~~~ 159 (478)
++.. ...++.+|+... . . .+.++.+........+++++|||+++++... . .....+..+.
T Consensus 72 ~~~~~~~g~~~~~~~~l~~~~~~~--~--~-~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~ 146 (403)
T 2qt3_A 72 ERLPKFWSRPYTRDAAIEDGLKYY--K--N-ATHEEIKRHVIEHAHMQVLHGTLYTRTHVDVDSVAKTKAVEAVLEAKEE 146 (403)
T ss_dssp SSSCTTCSSCCCHHHHHHHHHHHH--H--H-CCHHHHHHHHHHHHHHHHHTTEEEEEEEEECSTTTTTHHHHHHHHHHHH
T ss_pred cccccccCCCcccCcCHHHHHHHh--h--h-cCHHHHHHHHHHHHHHHHHcCCcEEEEEEcccCccccchHHHHHHHHHH
Confidence 1111 011255666442 2 1 2566666666778889999999999654321 1 1222333333
Q ss_pred hCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHH
Q 011766 160 LGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLE 239 (478)
Q Consensus 160 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (478)
.+.........+... + ..... +..+.+++....+...+. .+.++..+..+++.+.+
T Consensus 147 ~~~~~~~~~~~~~~~-~----------~~~~~------------~~~~~~~~~~~~g~~~~~-~~~p~~~~~~~~~~l~~ 202 (403)
T 2qt3_A 147 LKDLIDIQVVAFAQS-G----------FFVDL------------ESESLIRKSLDMGCDLVG-GVDPATRENNVEGSLDL 202 (403)
T ss_dssp HTTTCEEEEEEECTT-C----------TTTST------------THHHHHHHHHHTTCSEEE-CBCTTTTTSCHHHHHHH
T ss_pred hhcceeEEEEEcCCc-c----------cccCc------------chHHHHHHHHhcCCCeEE-EecCCCCCCChHHHHHH
Confidence 221110100001000 0 00011 344445444433333222 13355555666789999
Q ss_pred HHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCCh-------hHHHHHHhcCCeE
Q 011766 240 TRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH-------TEIGLLSRAGVKV 312 (478)
Q Consensus 240 ~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~-------~~~~~~~~~~~~~ 312 (478)
+++.|+++|+++++|+.+.......... ..++.+...+. ..+..+.|+.++++ ++++++++.|+.+
T Consensus 203 ~~~~A~~~g~~v~~H~~~~~~~~~~~~~------~~~~~~~~~g~-~~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v 275 (403)
T 2qt3_A 203 CFKLAKEYDVDIDYHIHDIGTVGVYSIN------RLAQKTIENGY-KGRVTTSHAWCFADAPSEWLDEAIPLYKDSGMKF 275 (403)
T ss_dssp HHHHHHHTTCEEEEEECCCHHHHHHHHH------HHHHHHHHTTC-TTSEEEEECTHHHHSCHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHcCCCeEEEeCCcccchhHHHH------HHHHHHHHcCC-CCCeEEEehhhhccCChhhHHHHHHHHHHcCCEE
Confidence 9999999999999999887543221111 02333444554 56789999999875 8999999999999
Q ss_pred EECccchhhccCCCcHHHHHHCCCcEEEcCCCCC----CCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHH
Q 011766 313 SHCPASAMRMLGFAPIKEMLHADICVSLGTDGAP----SNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRM 388 (478)
Q Consensus 313 ~~~p~~~~~~~~~~~~~~~~~~gv~v~~gsD~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~ 388 (478)
++||... .+..+++.++++|+++++|||++. .....+++.+++.+..... + ...+|+++++++
T Consensus 276 ~~~p~~~---~~~~~~~~~~~~Gv~v~lgtD~~~~~~~~~g~~~~~~~~~~~~~~~~--------~--~~~~~~~~al~~ 342 (403)
T 2qt3_A 276 VTCFSST---PPTMPVIKLLEAGINLGCASDNIRDFWVPFGNGDMVQGALIETQRLE--------L--KTNRDLGLIWKM 342 (403)
T ss_dssp EEETTTC---CTTCCHHHHHHTTCEEEEECCSCSSSSCSCCCCCHHHHHHHHHHHTT--------C--CSHHHHHHHHHH
T ss_pred EECCCCC---CCCCCHHHHHHcCCcEEEeCCCCCCCCCCCCCCCHHHHHHHHHHHhC--------c--CCccCHHHHHHH
Confidence 9999643 457899999999999999999862 1123477887776554321 1 113789999999
Q ss_pred HhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeee
Q 011766 389 ATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKIL 460 (478)
Q Consensus 389 ~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~ 460 (478)
+|.|||+++|++++ |+|++||.|||||+|.++ |+..+.+ ..+|..||++|++|+++|+++
T Consensus 343 ~T~~~A~~lg~~~~-g~i~~G~~ADlvv~d~~~--------~~~~~~~---~~~v~~v~v~G~~v~~~g~~~ 402 (403)
T 2qt3_A 343 ITSEGARVLGIEKN-YGIEVGKKADLVVLNSLS--------PQWAIID---QAKRLCVIKNGRIIVKDEVIV 402 (403)
T ss_dssp TTHHHHHHHTCGGG-CSSSTTSBCCEEEESSSS--------HHHHHHH---CCCEEEEEETTEEEEESSSBC
T ss_pred HHHHHHHhcCCCcc-cCCCCCCcCCEEEEcCCC--------hHHHhhc---CCCccEEEECCEEEecCCccc
Confidence 99999999999764 999999999999999972 3444333 358999999999999999986
|
| >2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural genomics, protein structure initiative; 1.78A {Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-41 Score=329.74 Aligned_cols=366 Identities=18% Similarity=0.187 Sum_probs=251.0
Q ss_pred CCCCCCC-CccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeeccccccc
Q 011766 9 GSSSGSL-GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHV 87 (478)
Q Consensus 9 ~~~~~~~-~~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~ 87 (478)
+++..+. .++++++|+|++|+++++ ..+.+++|+|+||||++|++..+.+.. ..++++||++ ++|+|||||+|+
T Consensus 26 ~~~~~~~~~~~~~~li~n~~v~~~~~--~~~~~~~V~I~~g~I~~vg~~~~~~~~--~~~~~viD~~-~~v~PGlID~H~ 100 (420)
T 2imr_A 26 TTPDALTPDAHTPRLLTCDVLYTGMG--GAQSPGGVVVVGETVAAAGHPDELRRQ--YPHAAEERAG-AVIAPPPVNAHT 100 (420)
T ss_dssp ----------CCEEEEEESEEECC-----EESSEEEEEETTEEEEEECHHHHHHH--CTTCEEEECC-SEESSCCCEEEE
T ss_pred ccccccCCcccccEEEECCEEEeCCC--CeeeccEEEEECCEEEEecCccccccc--CCCCeeecCC-eEECCCCEecCc
Confidence 3444443 345678999999997653 356788999999999999975432211 1246899999 999999999999
Q ss_pred ccchhhhccccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCHHHHHHHHHHhCCeEEEe
Q 011766 88 HTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLV 167 (478)
Q Consensus 88 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~g~~~~~~ 167 (478)
|+.....++.. .++.+|+....++.+..++. ........+++++||||+++++.. ...+.......|++.+..
T Consensus 101 H~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~GvTtv~d~~~~-~~~~~~~~~~~g~r~~~~ 173 (420)
T 2imr_A 101 HLDMSAYEFQA--LPYFQWIPEVVIRGRHLRGV----AAAQAGADTLTRLGAGGVGDIVWA-PEVMDALLAREDLSGTLY 173 (420)
T ss_dssp ESSCCHHHHHH--CHHHHTSHHHHHHHTTCCHH----HHHHHHHHHHHHTTCCCEEEEECS-HHHHHHHHTCTTCCEEEE
T ss_pred Ccchhhhhhcc--CCHHHHHHHhhhhhhhccCH----HHHHHHHHHHHhcCcEEEEEccCC-HHHHHHHHHhcCcEEEEE
Confidence 99765444322 34556654432222211211 333456678999999999997632 222222344567766554
Q ss_pred cccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHc
Q 011766 168 QSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREF 247 (478)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 247 (478)
..... .++.. ...... +..+.++.+...+.+.++..+.++..+.++++.+.++++.+++.
T Consensus 174 ~~~~~----~~~~~----~~~~~~------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~ 233 (420)
T 2imr_A 174 FEVLN----PFPDK----ADEVFA------------AARTHLERWRRLERPGLRLGLSPHTPFTVSHRLMRLLSDYAAGE 233 (420)
T ss_dssp EEECB----CCGGG----HHHHHH------------HHHHHHHHHHTTCBTTEEEEEEECCSSSBCHHHHHHHHHHHHHH
T ss_pred eeecC----CCchh----hHHHHH------------HHHHHHHHHhcccCCceEEEecCCcCCCcCHHHHHHHHHHHHHC
Confidence 33321 11100 000111 44455555555444567777777777778999999999999999
Q ss_pred CCceeEeccCChhhhHHHhhhcCC------------------------CCchHHHHhhhCCCCCCeeeeeeccCChhHHH
Q 011766 248 KTGIHMHVAEIPYENQVVMDTRKV------------------------DHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIG 303 (478)
Q Consensus 248 ~~~v~~H~~~~~~~~~~~~~~~~~------------------------~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~ 303 (478)
|+++++|+.+...+........+. ....++.+...+.+..+.++.|+.++++++++
T Consensus 234 g~~v~~H~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~i~H~~~l~~~~i~ 313 (420)
T 2imr_A 234 GLPLQIHVAEHPTELEMFRTGGGPLWDNRMPALYPHTLAEVIGREPGPDLTPVRYLDELGVLAARPTLVHMVNVTPDDIA 313 (420)
T ss_dssp TCCBEEEESCSHHHHHHHHHSCSTTGGGSCGGGSCSSHHHHHTSCCCTTCCHHHHHHHHTCGGGCCEEEECCSCCHHHHH
T ss_pred CCcEEEEeCCCHHHHHHHHHhhccccccccccchhhhhhhhccccccCCCCHHHHHHHcCCCCCCeEEEecCcCCHHHHH
Confidence 999999998776544443332110 12245666677777778899999999999999
Q ss_pred HHHhcCCeEEECccchhhc-cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCH
Q 011766 304 LLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPA 382 (478)
Q Consensus 304 ~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 382 (478)
++++.++.+++||.++... .+.+|++.++++|+++++|||+++.+...+++.+++.+... ..++|+
T Consensus 314 ~l~~~g~~~~~~p~~~~~~~~~~~~l~~~~~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~-------------~~~ls~ 380 (420)
T 2imr_A 314 RVARAGCAVVTCPRSNHHLECGTFDWPAFAAAGVEVALGTDSVASGETLNVREEVTFARQL-------------YPGLDP 380 (420)
T ss_dssp HHHHHTCCEEECHHHHHHTTCCCCCHHHHHHTTCCEEECCCCHHHHSCSCTHHHHHHHHHH-------------CTTSCH
T ss_pred HHHHcCCeEEECHHHHHHhccCCCCHHHHHHCCCeEEEECCCCccCCCCCHHHHHHHHHhc-------------CCCCCH
Confidence 9999999999999887655 56889999999999999999986543456788888766421 125999
Q ss_pred HHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCC
Q 011766 383 ETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPF 420 (478)
Q Consensus 383 ~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~ 420 (478)
+++++++|.|||+++|+++++|+|++||+||| |+|.+
T Consensus 381 ~~al~~aT~n~A~~lgl~~~~GsL~~Gk~ADl-vvd~~ 417 (420)
T 2imr_A 381 RVLVRAAVKGGQRVVGGRTPFLRRGETWQEGF-RWELS 417 (420)
T ss_dssp HHHHHHHHHHHHHHHC--CCCCSTTSBCCGGG-BGGGC
T ss_pred HHHHHHHHHHHHHHhCCCCCceeeCCCCccCE-EEECC
Confidence 99999999999999999888999999999999 77876
|
| >2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo 4YL)-propionic acid, PSI-2 community, structural genomics, structure initiative; HET: DI6; 1.97A {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-40 Score=321.76 Aligned_cols=378 Identities=17% Similarity=0.207 Sum_probs=243.7
Q ss_pred ceeEEEecEEEeeCCC---CceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhc
Q 011766 19 STMILHNAVIVTMDKE---SRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~---~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~ 95 (478)
++++|+|++|+|+++. .+.+.+++|+|+||||++||+..+.+. ..++++||++|++|+|||||+|+|+.....+
T Consensus 5 ~~~li~n~~i~t~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~---~~~~~viD~~G~~v~PG~ID~H~H~~~~~~~ 81 (416)
T 2q09_A 5 CERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKG---PYPAHWQDMKGKLVTPGLIDCHTHLIFAGSR 81 (416)
T ss_dssp CSEEEEEEEEBCCCTTSSTTCBCSSEEEEEETTEEEEEEEGGGCC-----CCTTSEECTTCEEEECEEEEEECCCCCSCC
T ss_pred ccEEEEcCeEeccCcccccccccccceEEEECCEEEEEcChhhccc---cCCCeEEeCCCCEECCcccccccCcchhhhh
Confidence 5789999999987753 245577899999999999997543211 0135799999999999999999999654321
Q ss_pred cccCCCCchHHhhhcccc--------------ccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc--CHH---HHHH-
Q 011766 96 GIADDVDLMTWLHDRIWP--------------YESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ--HVS---EMAK- 155 (478)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~--~~~---~~~~- 155 (478)
. ..+..|+.+..|. .....++++..........+++++||||+.+++.. ... ...+
T Consensus 82 ~----~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~ 157 (416)
T 2q09_A 82 A----EEFELRQKGVPYAEIARKGGGIISTVRATRAASEDQLFELALPRVKSLIREGVTTVEIKSGYGLTLEDELKMLRV 157 (416)
T ss_dssp H----HHHHHHHTTCCHHHHHHTTCTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTEEEEEEECCSCCSHHHHHHHHHH
T ss_pred H----HHHHHHHhcCCHHHhhhcCCcEeehhhhccCCCHHHHHHHHHHHHHHHHHcCCcEEEeccCcccChHhHHHHHHH
Confidence 1 0122232221110 00113444444555566788999999999986421 111 1112
Q ss_pred ---HHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccC
Q 011766 156 ---AVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNA 232 (478)
Q Consensus 156 ---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (478)
.....+++....... .+..+..+.. .... ++.....+.+..+... +..............
T Consensus 158 ~~~~~~~~~~r~~~~~~~---~~~~~~~~~~-~~~~-----------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 220 (416)
T 2q09_A 158 ARRLGEALPIRVKTTLLA---AHAVPPEYRD-DPDS-----------WVETICQEIIPAAAEA--GLADAVDVFCEHIGF 220 (416)
T ss_dssp HHHHHHHSSSEEEEEEEE---ETSCCGGGTT-CHHH-----------HHHHHHHTHHHHHHHT--TCCSEEEEBBSTTSB
T ss_pred HHHHHhhCCceEEEeeec---cccCCccccC-CHHH-----------HHHHHHhhhhHHHHhc--ccccccccccCCCcC
Confidence 223455655422111 0111111100 0000 0000011122222111 111111222333456
Q ss_pred CHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeE
Q 011766 233 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKV 312 (478)
Q Consensus 233 ~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~ 312 (478)
+++.+.++++.+++.|+++++|+.+.... ..++.....+ ...+.|+.++++++++++++.++.+
T Consensus 221 ~~~~~~~~~~~a~~~g~~v~~H~~~~~~~------------~~~~~~~~~g----~~~~~H~~~~~~~~~~~~~~~g~~~ 284 (416)
T 2q09_A 221 SLAQTEQVYLAADQYGLAVKGHMDQLSNL------------GGSTLAANFG----ALSVDHLEYLDPEGIQALAHRGVVA 284 (416)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEESSSCCC------------SHHHHHHHTT----CSEEEECTTCCHHHHHHHHHHTCEE
T ss_pred CHHHHHHHHHHHHHCCCcEEEEECCCCch------------HHHHHHHHcC----CCEEeecccCCHHHHHHHHHcCCeE
Confidence 88999999999999999999999764310 0122222222 2357999999999999999999999
Q ss_pred EECccchhhc--cCCCcHHHHHHCCCcEEEcCCCCCC-CCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHH
Q 011766 313 SHCPASAMRM--LGFAPIKEMLHADICVSLGTDGAPS-NNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMA 389 (478)
Q Consensus 313 ~~~p~~~~~~--~~~~~~~~~~~~gv~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~ 389 (478)
+.||..++.. .+.+|++.+++.|+++++|||+++. .+..+++.+++.+.... ++|++++++++
T Consensus 285 ~~~p~~~~~~~~~~~~~~~~~~~~Gv~~~~gtD~~~~~~~~~~~~~~~~~~~~~~--------------~l~~~~al~~~ 350 (416)
T 2q09_A 285 TLLPTAFYFLKETKLPPVVALRKAGVPMAVSSDINPGTAPIVSLRMAMNMACTLF--------------GLTPVEAMAGV 350 (416)
T ss_dssp EECHHHHHHTTCCCCCCHHHHHHTTCCEEECCCCBTTTBCCCCHHHHHHHHHHHH--------------CCCHHHHHHHT
T ss_pred EEcCccHHhhccccccCHHHHHHCCCeEEEecCCCCccCCCCCHHHHHHHHHHHc--------------CCCHHHHHHHH
Confidence 9999987654 4678999999999999999998653 23467888887654321 59999999999
Q ss_pred hHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCee
Q 011766 390 TINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKI 459 (478)
Q Consensus 390 T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~ 459 (478)
|.|||+++|+++++|+|++||.|||||+|.+++. ...+.....+|..||++|++||+++-+
T Consensus 351 T~~~A~~lg~~~~~G~l~~G~~ADlvvld~~~~~---------~~~~~~~~~~v~~v~v~G~~v~~~~~~ 411 (416)
T 2q09_A 351 TRHAARALGEQEQLGQLRVGMLADFLVWNCGHPA---------ELSYLIGVDQLVSRVVNGEETLHGEGH 411 (416)
T ss_dssp THHHHHHTTCTTTSSSCCTTSBCCEEEESSSCTT---------HHHHSCSCCCEEEEEETTEECCC----
T ss_pred HHHHHHHhCCCccceecCCCCCccEEEECCCchh---------hhhhhhccCcceEEEECCEEEEeCCCc
Confidence 9999999999888999999999999999998543 222333457899999999999987643
|
| >2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate, product-bound, structural genomics, protein STRU initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-40 Score=322.09 Aligned_cols=376 Identities=19% Similarity=0.249 Sum_probs=239.2
Q ss_pred cceeEEEecEEEeeCCC---CceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhh
Q 011766 18 SSTMILHNAVIVTMDKE---SRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLA 94 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~---~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~ 94 (478)
+++++|+|++|+|+++. .+.+.+++|+|+||||++||+..+.+... ...+++||++|++|+|||||+|+|+.....
T Consensus 14 ~~~~li~n~~i~t~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~-~~~~~viD~~G~~v~PG~ID~H~H~~~~~~ 92 (419)
T 2puz_A 14 NATALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDL-STADETTDCGGRWITPALIDCHTHLVFGGN 92 (419)
T ss_dssp -CEEEEEEEEEECCCTTSSTTCEEEEEEEEEETTEEEEEEETTSCCGGG-SCCSEEEECTTCEEEECEEECCCCCCCSSC
T ss_pred CCcEEEECCeEeccCcccccCCcccceEEEEECCEEEEEcChhhhhhhc-cCCCeEEeCCCCEeCcCceecccCccchhh
Confidence 46899999999998753 35567889999999999999754322111 113589999999999999999999864321
Q ss_pred ccccCCCCchHHhhhccc--------------cccCCCChHHHHHHHHHHHHHHHhcCcceeecCCc--cCHH---HHHH
Q 011766 95 KGIADDVDLMTWLHDRIW--------------PYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG--QHVS---EMAK 155 (478)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~--~~~~---~~~~ 155 (478)
+. ..+..|+.+..+ ......+.+..+........+++++|||++.+... .... ...+
T Consensus 93 ~~----~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~ 168 (419)
T 2puz_A 93 RA----MEFEMRLNGATYEEIAKAGGGIVSSVRDTRALSDEVLVAQALPRLDTLLSEGVSTIEIKSGYGLDIETELKMLR 168 (419)
T ss_dssp CH----HHHHHHHTTCCHHHHHHTTCSHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTTEEEEEEECCSCCSHHHHHHHHH
T ss_pred hH----HHHHHHhcCCCHHHHHhcCCCeecchhhhccCCHHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCchhHHHHHH
Confidence 11 001112111000 00011233444444555678899999999988432 1111 2223
Q ss_pred HHHHh----CCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEecccccc
Q 011766 156 AVELL----GLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMN 231 (478)
Q Consensus 156 ~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (478)
.+... +++..... ...+..+..+.. .... +......+.++.+... +.............
T Consensus 169 ~~~~~~~~~~~r~~~~~---~~~~~~~~~~~~-~~~~-----------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 231 (419)
T 2puz_A 169 VARRLETLRPVRIVTSY---LAAHATPADYKG-RNAD-----------YITDVVLPGLEKAHAE--GLADAVDGFCEGIA 231 (419)
T ss_dssp HHHHHTTTSSCEEEEEE---CCTTCCCGGGTT-CHHH-----------HHHHTHHHHHHHHHHT--TCCSEECCEESTTS
T ss_pred HHHHHhhhcCceEEEEe---cccccCchhhcc-cHHH-----------HHHHHHhhhhhhhhhc--ccccccccccCCCC
Confidence 33222 33332111 111111111100 0000 0000111122222111 11111111122234
Q ss_pred CCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCe
Q 011766 232 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVK 311 (478)
Q Consensus 232 ~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~ 311 (478)
.+++.+.++++.+++.|+++++|+.+.... ...+.....+ ...+.|+.++++++++++++.++.
T Consensus 232 ~~~~~~~~~~~~a~~~g~~v~~H~~~~~~~------------~~~~~~~~~g----~~~~~H~~~~~~~~~~~~~~~g~~ 295 (419)
T 2puz_A 232 FSVKEIDRVFAAAQQRGLPVKLHAEQLSNL------------GGAELAASYN----ALSADHLEYLDETGAKALAKAGTV 295 (419)
T ss_dssp BCHHHHHHHHHHHHHTTCCBEEEESSSSCC------------SHHHHHHHTT----CSEEEECTTCCHHHHHHHHHHTCE
T ss_pred cCHHHHHHHHHHHHHCCCcEEEEecccccC------------CHHHHHHhcC----CceehHhccCCHHHHHHHHHcCCc
Confidence 578899999999999999999999754210 1222222332 234789999999999999999999
Q ss_pred EEECccchhhc--cCCCcHHHHHHCCCcEEEcCCCCCC-CCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHH
Q 011766 312 VSHCPASAMRM--LGFAPIKEMLHADICVSLGTDGAPS-NNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRM 388 (478)
Q Consensus 312 ~~~~p~~~~~~--~~~~~~~~~~~~gv~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~ 388 (478)
++++|..++.. .+..+++.+++.|+++++|||+++. .+..+++..++.+.... ++|+++||++
T Consensus 296 ~~~~p~~~~~l~~~~~~~~~~~~~~Gv~~~lgsD~~~~~~~~~~l~~~~~~~~~~~--------------~ls~~~al~~ 361 (419)
T 2puz_A 296 AVLLPGAFYALREKQLPPVQALRDAGAEIALATDCNPGTSPLTSLLLTMNMGATLF--------------RMTVEECLTA 361 (419)
T ss_dssp EEECHHHHHHHTCCCCCCHHHHHHHTCCEEECCCCCSSSCCBCCHHHHHHHHHHHH--------------CCCHHHHHHH
T ss_pred EEECCchhhhhcccccccHHHHHHCCCeEEEECCCCCCCCccccHHHHHHHhcccc--------------CCCHHHHHHH
Confidence 99999877644 4578999999999999999998653 33457888887654322 4999999999
Q ss_pred HhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEE
Q 011766 389 ATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVM 454 (478)
Q Consensus 389 ~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~ 454 (478)
+|.|||+++|+++++|+|++||+|||||||.+++. .+.+.....+|..||++|++|.
T Consensus 362 ~T~~~A~~lg~~~~~Gsi~~Gk~ADlvvld~~~~~---------~~~~~~~~~~v~~v~v~G~~v~ 418 (419)
T 2puz_A 362 TTRNAAKALGLLAETGTLEAGKSADFAIWDIERPA---------ELVYRIGFNPLHARIFKGQKVS 418 (419)
T ss_dssp TTHHHHHHTTCTTTSSSCCTTSBCCEEEECCSSTT---------HHHHCBSCCCEEEEEETTEECC
T ss_pred HHHHHHHHcCCCCCccccCCCCcCCEEEECCCchh---------cchhhhcCCceEEEEECCEEcC
Confidence 99999999999888999999999999999997432 2333345578999999999874
|
| >2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-38 Score=312.80 Aligned_cols=383 Identities=19% Similarity=0.166 Sum_probs=236.5
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEE-ECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFV-VQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I-~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~ 95 (478)
...+++|+|++|+|+++. ..+.+++|+| +||||++|++..... ...++++||++|++|+|||||+|+|+......
T Consensus 11 ~~~~~li~n~~i~~~~~~-~~~~~~~v~I~~~g~I~~Vg~~~~~~---~~~~~~viD~~G~~v~PG~ID~H~H~~~~~~~ 86 (458)
T 2p9b_A 11 VEPFALAHATIVTGDKAG-TILRNMTIVVGADGRIEQVAPSIETS---IPAEYHYLDGTGKIVMPGLINAHTHLFSQGKP 86 (458)
T ss_dssp CCCEEEEEEEEECCCTTC-CEEEEEEEEECTTSBEEEEEEGGGCC---CCTTCEEEECTTCEEEECEEEEEECSCC----
T ss_pred CCCcEEEEeeEEEeCCCC-ccccCcEEEEecCCEEEEEeccccCC---CCCCCeEEECCCCEEccceeeeeecccccccc
Confidence 456889999999987543 4556789999 999999999732211 01246899999999999999999999764422
Q ss_pred -cccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC-HHHHHHHHHHhCC----eEEEecc
Q 011766 96 -GIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-VSEMAKAVELLGL----RACLVQS 169 (478)
Q Consensus 96 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~-~~~~~~~~~~~g~----~~~~~~~ 169 (478)
....+.....|.....| ...++.+..+........+++++||||+++++... .....+.....+. +......
T Consensus 87 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~g~~~g~r~~~~g~ 164 (458)
T 2p9b_A 87 LNPKLATPKGQRMVATFA--HSPLGKPYMAATVKHNATTLLESGVTTIRTLGDVGYEVVTLRDQIDAGQILGPRILASGP 164 (458)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHTTEEEEEESCCSSSHHHHHHHHHHTTSSCCCEEECCCS
T ss_pred ccccccchhhhhhhhhhh--hhcccccHHHHHHHHHHHHHHHcCCcEEEeCCCCccccHHHHHHHHcCCCCCCeEEeccc
Confidence 11111111111111111 11122233344445577889999999999986532 2223333333343 3332222
Q ss_pred cccCCCCCCC-cccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEe-----cc-----ccccCCHHHHH
Q 011766 170 TMDCGEGLPA-SWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFG-----IR-----QIMNATDRLLL 238 (478)
Q Consensus 170 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~l~ 238 (478)
.+....+... .+.. .... ..+..+.+++....+...++++.. +. ..+.++++.+.
T Consensus 165 ~~~~~g~~~~~~~~~--~~~~------------~~~~~~~~~~~~~~g~~~ik~~~~g~~~~~~~~~~~~~~~~~~~~l~ 230 (458)
T 2p9b_A 165 LMAIPEGHGAPLIAL--TSGT------------PEEARTAVAQNLKAGVNAIKIAATGGVTDAQEIGEAGSPQMSVEQMR 230 (458)
T ss_dssp CEECCCSSCCCCEEC--CSCC------------HHHHHHHHHHHHHTTCSCEEEECSCCTTSCCCC------CCCHHHHH
T ss_pred ccccCCCCCccccCc--cCCC------------HHHHHHHHHHHHHcCCCEEEEEecCCcCCCCccCCCCCCcCCHHHHH
Confidence 1111000000 0000 0000 013334444443444556776542 11 23457889999
Q ss_pred HHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHH------hcCCeE
Q 011766 239 ETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLS------RAGVKV 312 (478)
Q Consensus 239 ~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~------~~~~~~ 312 (478)
++++.|++.|+++.+|+.+..... ..+. .+ ...+.|+.+++++.+++++ +.|+.+
T Consensus 231 ~~~~~a~~~g~~v~~H~~~~~~i~--------------~~~~-~G----~~~i~H~~~~~~~~~~~~~~~~~~~~~g~~v 291 (458)
T 2p9b_A 231 AICDEAHQYGVIVGAHAQSPEGVR--------------RSLL-AG----VDTIEHGSVLDDELIGMFRHNPNALRGYSAL 291 (458)
T ss_dssp HHHHHHHHTTCCEEEEECSHHHHH--------------HHHH-HT----CSEEEECCCCCHHHHHHHHCCTTSTTSCCEE
T ss_pred HHHHHHHHCCCeEEEEeCCHHHHH--------------HHHH-cC----CCEEEECCCCCHHHHHHHhcccccccCCeEE
Confidence 999999999999999997533211 1111 12 2357999999999999999 899765
Q ss_pred EECccc--hhh-c------cC----------------CCcHHHHHHCCCcEEEcCCCCC-CCCCcCHHHHHHHHHHHhcc
Q 011766 313 SHCPAS--AMR-M------LG----------------FAPIKEMLHADICVSLGTDGAP-SNNRMSIVDEMYLASLINKG 366 (478)
Q Consensus 313 ~~~p~~--~~~-~------~~----------------~~~~~~~~~~gv~v~~gsD~~~-~~~~~~~~~~~~~~~~~~~~ 366 (478)
+|.. +.. . .+ ..+++.++++|+++++|||++. .....+++.+++.....
T Consensus 292 --~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~gtD~~~~~~~~~~~~~e~~~~~~~--- 366 (458)
T 2p9b_A 292 --IPTLSAGLPLTLLGQDVTGITDIQLENSKNVVGGMVSGARQAHEAGLMIGVGTDTGMTFVPQYATWRELELLVAY--- 366 (458)
T ss_dssp --ECCHHHHHHHHHSCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCCCTTSTTSCTTCHHHHHHHHHHH---
T ss_pred --EeecchhhHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEecCCCCCCCccccHHHHHHHHHHh---
Confidence 3443 210 0 01 2467789999999999999743 22334567666543211
Q ss_pred cccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEE
Q 011766 367 REVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSV 446 (478)
Q Consensus 367 ~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v 446 (478)
.++|++++++++|.|||+++|+++++|+|++||.|||||+|.+++. ++ ..+ .+|..|
T Consensus 367 -----------~~ls~~~al~~~T~~~A~~lgl~~~~Gsi~~Gk~ADlvvld~~p~~-----~~-~~~------~~v~~v 423 (458)
T 2p9b_A 367 -----------AGFSPAEALHAATAVNASILGVDAETGSLEVGKSADLLVLNANPLD-----DL-RAL------EHPALV 423 (458)
T ss_dssp -----------HCCCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEESSCTTT-----CG-GGG------TSCSEE
T ss_pred -----------cCCCHHHHHHHHHHHHHHHhCCcCCCCccCCCCcCCEEEECCCchh-----CH-HHh------ccceEE
Confidence 1599999999999999999999888999999999999999998542 32 111 489999
Q ss_pred EEccEEEEEC--CeeecccHHH
Q 011766 447 MCNGQWVMKN--KKILLLMRGR 466 (478)
Q Consensus 447 ~v~G~~v~~~--g~~~~~~~~~ 466 (478)
|++|++|+++ +++...+...
T Consensus 424 ~v~G~~v~~~~~~~~~~~d~~~ 445 (458)
T 2p9b_A 424 IAAGHPVWRPGPKRFADIDALL 445 (458)
T ss_dssp EETTEECCSCCCCCCHHHHHHH
T ss_pred EECCEEEecCchhhhhhHhHHH
Confidence 9999999999 8887776543
|
| >3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=305.61 Aligned_cols=364 Identities=13% Similarity=0.136 Sum_probs=236.7
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~ 96 (478)
++++++|+|++|+++++. .... ++|+|+||||++|++. . + .++++||++|++|+|||||+|+|+. ..
T Consensus 4 ~~~~~~i~n~~v~~~~~~-~~~~-~~v~I~~g~I~~ig~~-~-----~-~~~~viD~~g~~v~PGlID~H~H~~-~~--- 70 (408)
T 3be7_A 4 TSEDFLIKSKGYLDIQTG-EIIK-ADLLIRNGKIAEIGKI-N-----T-KDATVISIPDLILIPGLMDSHVHIV-GN--- 70 (408)
T ss_dssp -CCCEEEEEEEEECTTTC-CEEC-CEEEEETTEEEEEECC-C-----C-SSSEEEEEEEEEEEECEEEEEECCS-SC---
T ss_pred ccceEEEEeeEEEeCCCC-ceee-eEEEEECCEEEEEeCC-C-----C-CCCeEEECCCCEECcCceeeeEccc-CC---
Confidence 356799999999976542 3455 8999999999999975 1 1 2568999999999999999999985 21
Q ss_pred ccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC-HHHHHHHHHHhCC----eEEEecccc
Q 011766 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-VSEMAKAVELLGL----RACLVQSTM 171 (478)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~-~~~~~~~~~~~g~----~~~~~~~~~ 171 (478)
....| .. -..++++.+........+++++||||++++++.. .....+.....+. +.+.....+
T Consensus 71 -----~~~~~-~~------~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 138 (408)
T 3be7_A 71 -----DSKGE-ES------IADSSHMGTVWGVVNAEKTLMAGFTTVRNVGAANYADVSVRDAIERGVINGPTMLVSGPAL 138 (408)
T ss_dssp -----CCCSG-GG------TTCCTHHHHHHHHHHHHHHHTTTEEEEEECCCSTTHHHHHHHHHHTTSSCCCEEEECCSCB
T ss_pred -----CCcch-hh------hcCCHHHHHHHHHHHHHHHHHcCCCEEEeCCCccccCHHHHHHHHCCCCCCCEEEEcccee
Confidence 11122 11 0134455555556678889999999999987533 2223333444443 443322111
Q ss_pred --cCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEe-----cc---ccccCCHHHHHHHH
Q 011766 172 --DCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFG-----IR---QIMNATDRLLLETR 241 (478)
Q Consensus 172 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~l~~~~ 241 (478)
..++...+.+.... ..+.. .......+..+.+++....+...++.+.. .. +.+..+++.+.+++
T Consensus 139 ~~~g~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~g~~~ik~~~~g~~~~~~~~~g~~~~~~~~l~~~~ 212 (408)
T 3be7_A 139 GITGGHCDHNLLPPEF----NYSSE--GVVDSPWEARKMVRKNRKYGADLIKFCATGGVMSRNTDVNAKQFTLEEMKAIV 212 (408)
T ss_dssp BCTTSTTSCCCSCTTT----CCCCT--TBCCSHHHHHHHHHHHHHTTCSEEEEECBCCSSSSSCCTTSBCSCHHHHHHHH
T ss_pred eccCCCCccccccccc----cccCC--cccCCHHHHHHHHHHHHhcCCCEEEEEecCCcCCCCCCCCCCCCCHHHHHHHH
Confidence 11111001100000 00000 00011124444555443444455665431 11 23567889999999
Q ss_pred HHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhh
Q 011766 242 DMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMR 321 (478)
Q Consensus 242 ~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 321 (478)
+.|++.|+++.+|+.+..... ..+ ..+ ...+.|+.+++++.++++++.|+.++.++.....
T Consensus 213 ~~A~~~g~~v~~H~~~~~~i~--------------~~~-~~g----~~~i~H~~~~~~~~i~~~~~~g~~v~~~~~~~~~ 273 (408)
T 3be7_A 213 DEAHNHGMKVAAHAHGLIGIK--------------AAI-KAG----VDSVEHASFIDDETIDMAIKNNTVLSMDIFVSDY 273 (408)
T ss_dssp HHHHHTTCEEEEEECSHHHHH--------------HHH-HHT----CSEEEECTTCCHHHHHHHHHTTCEEECCCSTHHH
T ss_pred HHHHHCCCEEEEEeCCHHHHH--------------HHH-HcC----CCEEEECCCCCHHHHHHHHHCCCEEeeeecHHHH
Confidence 999999999999997643211 111 122 1468999999999999999999887665432110
Q ss_pred c----------------------cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCC
Q 011766 322 M----------------------LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAA 379 (478)
Q Consensus 322 ~----------------------~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (478)
. ....+++.++++|+++++|||+++. +..+++.+++... . .+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~gTD~~~~-p~~~~~~~~~~~~--~-------------~g 337 (408)
T 3be7_A 274 ILGEGAKAGIREESLNKERLVGKKQRENFMNAHRRGAIITFGTDAGIF-DHGDNAKQFAYMV--E-------------WG 337 (408)
T ss_dssp HHTTTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCCEECCCCBTTB-CTTCGGGHHHHHH--H-------------TT
T ss_pred hhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC-CCchHHHHHHHHH--H-------------cC
Confidence 0 0125678889999999999998642 2334566665422 1 15
Q ss_pred CCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCee
Q 011766 380 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKI 459 (478)
Q Consensus 380 ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~ 459 (478)
+|++++++++|.|||+++|++ ++|+|++||+|||||+|.+++. |+ ..+ .+|..||++|++|+++.-+
T Consensus 338 ls~~~al~~~T~n~A~~lgl~-~~G~i~~G~~ADlvvld~~p~~-----~~-~~~------~~v~~v~~~G~~v~~~~~~ 404 (408)
T 3be7_A 338 MTPLEAIQASTIKTATLFGIE-NIGQIKEGFDADIVGVIENPLA-----NI-RTL------EEVAFVMKEGKVYKREGHH 404 (408)
T ss_dssp CCHHHHHHTTTHHHHHHHTCS-SCSSCCTTSBCCEEEESSCTTT-----CG-GGT------TSCCEEEETTEEEEECCC-
T ss_pred CCHHHHHHHHHHHHHHHhCCC-cccccCCCCccCEEEECCCchh-----hH-HHh------hceeEEEECCEEEeccccc
Confidence 999999999999999999997 7899999999999999998543 32 211 4799999999999987643
|
| >2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=306.35 Aligned_cols=366 Identities=18% Similarity=0.197 Sum_probs=235.8
Q ss_pred CccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCC--eEEeCCCCEEeecccccccccchhh
Q 011766 16 GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMAD--QIIDLQSQILLPGFVNTHVHTSQQL 93 (478)
Q Consensus 16 ~~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~--~viD~~G~~v~PGfID~H~H~~~~~ 93 (478)
.+.++++|+|++|+++++. .++.+++|+|+||+|++|++.. . ..++ ++||++|++|+|||||+|+|+....
T Consensus 4 ~~~~~~li~n~~v~~~~~~-~~~~~~~v~I~~g~I~~vg~~~-~-----~~~~~~~viD~~g~~v~PGlID~H~H~~~~~ 76 (418)
T 2qs8_A 4 DVDSKTLIHAGKLIDGKSD-QVQSRISIVIDGNIISDIKKGF-I-----SSNDFEDYIDLRDHTVLPGLMDMHVHFGQEY 76 (418)
T ss_dssp ---CCEEEEEEEECCSSCS-SCEEEEEEEEETTEEEEEEESC-C-----CCTTSSEEEEEEEEEEEECEEEEEECTTCCC
T ss_pred CCCccEEEEeeEEEeCCCC-ccccCcEEEEECCEEEEEeCCC-C-----CCCCcceEEECCCCEECCCeeeeeeccccCC
Confidence 4567899999999987643 4557789999999999999753 1 1245 8999999999999999999995431
Q ss_pred hccccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC-HHHHHHHHHHhCC----eEEEec
Q 011766 94 AKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-VSEMAKAVELLGL----RACLVQ 168 (478)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~-~~~~~~~~~~~g~----~~~~~~ 168 (478)
.+..| . .-..++++.+........+++++||||+++++... .....+.....|. +.+...
T Consensus 77 --------~~~~~-~------~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~g~~~~~r~~~~~ 141 (418)
T 2qs8_A 77 --------QSKAQ-A------PIKVEREMQAILATQHAYVTFKSGFTTVRQVGDSGLVAISLRDAINSGKLAGPRIFAAG 141 (418)
T ss_dssp --------CCTTT-S------CSCCCHHHHHHHHHHHHHHHHHTTEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEECC
T ss_pred --------CCCch-h------hhcCCHHHHHHHHHHHHHHHHHcCCCEEEeCCCCccccHHHHHHHHCCCCCCCeEEecC
Confidence 11223 0 01234555555556678899999999999986432 2223333444443 554433
Q ss_pred ccc--cCCCCC-CCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEe-----cc---ccccCCHHHH
Q 011766 169 STM--DCGEGL-PASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFG-----IR---QIMNATDRLL 237 (478)
Q Consensus 169 ~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~l 237 (478)
..+ ..++.. .+.+...... . +...........+..+.+++....+...++++.. .+ +.+..+++.+
T Consensus 142 ~~~~~~g~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~g~~~~~~~~~g~~~~~~~~l 218 (418)
T 2qs8_A 142 KTIATTGGHADPTNGKAVDDYD-Y--PVPEQGVVNGPYEVYAAVRQRYKDGADGIKITVTGGVLSVAKSGQNPQFTQEEV 218 (418)
T ss_dssp SCBEETTCTTCTTTTCCGGGCC-C--CCGGGTEECSHHHHHHHHHHHHHHTCSEEEEECBCCSSSSSSCSSCBCSCHHHH
T ss_pred ccccccCCCccccccccccccc-c--ccccccccCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCCCCcccCCHHHH
Confidence 222 111111 0000000000 0 0000000011123444444332233456666532 11 2356789999
Q ss_pred HHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECcc
Q 011766 238 LETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPA 317 (478)
Q Consensus 238 ~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~ 317 (478)
.++++.|++.|+++.+|+.+...... .+. .+ ...+.|+.++++++++++++.|+.+. |.
T Consensus 219 ~~~~~~A~~~g~~v~~H~~~~~~i~~--------------~~~-~g----~~~i~H~~~~~~~~i~~l~~~gv~v~--p~ 277 (418)
T 2qs8_A 219 DAVVSAAKDYGMWVAVHAHGAEGMKR--------------AIK-AG----VDSIEHGTFMDLEAMDLMIENGTYYV--PT 277 (418)
T ss_dssp HHHHHHHHHTTCEEEEEECSHHHHHH--------------HHH-HT----CSEEEECTTCCHHHHHHHHHHTCEEE--CC
T ss_pred HHHHHHHHHcCCEEEEEECCHHHHHH--------------HHH-cC----CCEEEECCCCCHHHHHHHHHCCCEEe--ee
Confidence 99999999999999999975432111 111 12 24689999999999999999998654 54
Q ss_pred ch----hhc----cC-----------------CCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccC
Q 011766 318 SA----MRM----LG-----------------FAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFAN 372 (478)
Q Consensus 318 ~~----~~~----~~-----------------~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (478)
.. +.. .+ ..+++.+++.|+++++|||++. .+..+++.+++....
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~v~~gTD~~~-~~~~~~~~e~~~~~~---------- 346 (418)
T 2qs8_A 278 ISAGEFVAEKSKIDNFFPEIVRPKAASVGPQISDTFRKAYEKGVKIAFGTDAGV-QKHGTNWKEFVYMVE---------- 346 (418)
T ss_dssp HHHHHHHHHHTTSTTSSCTTTHHHHHHHHHHHHHHHHHHHHHTCCBCCCCCBTT-BCTTCTTHHHHHHHH----------
T ss_pred echHHHhhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeCCCCc-CCcchHHHHHHHHHH----------
Confidence 21 100 12 2357889999999999999854 233456777664321
Q ss_pred CCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEE
Q 011766 373 GTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQW 452 (478)
Q Consensus 373 ~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~ 452 (478)
.++|++++++++|.|||+++|+++++|+|++||.|||||+|.+++. |+ .. ..+|..||++|++
T Consensus 347 -----~gls~~eal~~~T~n~A~~lg~~~~~G~l~~G~~ADlvvld~~~~~-----~~-~~------~~~i~~v~~~G~~ 409 (418)
T 2qs8_A 347 -----NGMPAMKAIQSATMETAKLLRIEDKLGSIESGKLADLIAVKGNPIE-----DI-SV------LENVDVVIKDGLL 409 (418)
T ss_dssp -----TTCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEESSCTTT-----CG-GG------GGGEEEEEETTEE
T ss_pred -----cCCCHHHHHHHHHHHHHHHhCCCCCCcccCCCCccCEEEECCChhh-----CH-HH------hcCccEEEECCEE
Confidence 2599999999999999999999888999999999999999998543 32 21 2589999999997
Q ss_pred EEE
Q 011766 453 VMK 455 (478)
Q Consensus 453 v~~ 455 (478)
+..
T Consensus 410 ~~~ 412 (418)
T 2qs8_A 410 YEG 412 (418)
T ss_dssp EEC
T ss_pred Eec
Confidence 763
|
| >3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-38 Score=306.30 Aligned_cols=364 Identities=18% Similarity=0.219 Sum_probs=226.0
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccc
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~ 97 (478)
+++++|+|++|+++++ .... ++|+|+||+|++|++..+ ..++++||++|++|+|||||+|+|+.......
T Consensus 4 ~~~~~i~~~~i~~~~~--~~~~-~~v~i~~g~I~~i~~~~~------~~~~~~id~~g~~~~Pg~~d~h~h~~~~~~~~- 73 (396)
T 3ooq_A 4 SVKILFKNATVFPITS--RPFK-GDVLVSNGKVEKVGENIE------DPDAEIVDLTGKFLFPGFVDAHSHIGLFEEGV- 73 (396)
T ss_dssp --CEEEEEEEECCSSS--CCEE-EEEEEETTEEEEEESCCC------CTTSEEEECTTCEEEECEEEEEECTTTSCTTS-
T ss_pred cceEEEECcEEEeCCC--CeEE-eEEEEECCEEEEecCCCC------CCCCeEEECCCCEEecCEEecccccCccccCc-
Confidence 4678999999997664 3444 899999999999997643 13678999999999999999999997654311
Q ss_pred cCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCH-------------HHHHHHH--HHhCC
Q 011766 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHV-------------SEMAKAV--ELLGL 162 (478)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~-------------~~~~~~~--~~~g~ 162 (478)
....+|+....++..+.+...+.+........+++++|||+++++.+... ....... ...++
T Consensus 74 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~gs~~~i~G~~~~~~~~~~~~~~~~~~~~~~i 150 (396)
T 3ooq_A 74 ---GYYYSDGNEATDPVTPHVKALDGFNPQDPAIERALAGGVTSVMIVPGSANPVGGQGSVIKFRSIIVEECIVKDPAGL 150 (396)
T ss_dssp ---CGGGCCSCCTTCSBCTTCBGGGGCCTTCHHHHHHHTTTEEEEEECCCSSSSEEEEEEEEESCCSSHHHHEEEEEEEE
T ss_pred ---cccccccccccCccCccccHhhhcCcCcHHHHHHHhCCeEEEeccCCCCCcccCeeEEEeccCCCHHHceecCCcEE
Confidence 11134555556677777777766665556777899999999999743210 0000000 00111
Q ss_pred eEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHH---hcCCCCCCeEEEEeccccccCCHHHHHH
Q 011766 163 RACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAK---HHHAADGRIRIWFGIRQIMNATDRLLLE 239 (478)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (478)
+...+.... ...... ...+..... .....++.++. +..... ......+++..+....+.
T Consensus 151 ~~~~g~~~~--------~~~~~~---~~~p~~~~~---~~~~l~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~e~--- 212 (396)
T 3ooq_A 151 KMAFGENPK--------RVYGER---KQTPSTRMG---TAGVIRDYFTKVKNYMKKKE-LAQKEGKEFTETDLKMEV--- 212 (396)
T ss_dssp EEECSHHHH--------HHHHHT---TCSCSSHHH---HHHHHHHHHHHHHHHHHHHH-HHHHTTCCCCCCCHHHHH---
T ss_pred EEEcCCCCc--------cccccc---CCCCccHHH---HHHHHHHHHHHHHHHHHhhh-hhhhccCCCCCcChhHHH---
Confidence 111110000 000000 000000000 00011111111 100000 000001222222223333
Q ss_pred HHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccc-
Q 011766 240 TRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPAS- 318 (478)
Q Consensus 240 ~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~- 318 (478)
+..+.+.++++.+|+.+...... .+..+...+ .+..+.|+....+ .++++++.|+.+++||..
T Consensus 213 -l~~~~~~~~~v~iHa~~~~~i~~-----------~~~~~~~~g---~~~~i~H~~~~~~-~~~~l~~~gv~v~~~P~~~ 276 (396)
T 3ooq_A 213 -GEMVLRKKIPARMHAHRADDILT-----------AIRIAEEFG---FNLVIEHGTEAYK-ISKVLAEKKIPVVVGPLLT 276 (396)
T ss_dssp -HHHHHTTSSCEEEEECSHHHHHH-----------HHHHHHHHT---CCEEEEECTTGGG-GHHHHHHHTCCEEECCCSS
T ss_pred -HHHHHcCCCcEEEEECchhHHHH-----------HHHHHHHcC---CCEEEecCchHHH-HHHHHHHCCCCEEECcccc
Confidence 33345789999999977553221 233444443 4678999998765 599999999999999953
Q ss_pred ---hhhc--cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHH
Q 011766 319 ---AMRM--LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATING 393 (478)
Q Consensus 319 ---~~~~--~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~p 393 (478)
+... .+..+++.++++|++++++||++... ...+...+..+ . ..+++++++++++|.||
T Consensus 277 ~~~~~~~~~~~~~~~~~l~~~Gv~v~lgtD~~~~~-~~~l~~~~~~~---~------------~~gl~~~~al~~~T~n~ 340 (396)
T 3ooq_A 277 FRTKLELKDLTMETIAKLLKDGVLIALMCDHPVIP-LEFATVQAATA---M------------RYGAKEEDLLKILTVNP 340 (396)
T ss_dssp CCCSGGGTTCCTTHHHHHHHTTCCEEECCTTTTSC-GGGHHHHHHHG---G------------GGTCCHHHHHHTTTHHH
T ss_pred cccchhHHhhhhHHHHHHHHCCCEEEEEcCCCccC-ccHHHHHHHHH---H------------HcCCCHHHHHHHHHHHH
Confidence 3333 45679999999999999999986432 22222222111 1 13699999999999999
Q ss_pred HHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCee
Q 011766 394 AKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKI 459 (478)
Q Consensus 394 A~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~ 459 (478)
|+++|+++++|+|++|+.|||||+|.+++.. ..+|..||++|++|+++.+-
T Consensus 341 A~~lg~~~~~G~i~~G~~ADlvv~d~~~~~~---------------~~~v~~v~~~G~~v~~~~~~ 391 (396)
T 3ooq_A 341 AKILGLEDRIGSIEPGKDADLVVWSGHPFDM---------------KSVVERVYIDGVEVFRREGH 391 (396)
T ss_dssp HHHTTCTTTSSSCCTTSBCCEEEESSCTTST---------------TCCEEEEEETTEEEEECC--
T ss_pred HHHhCCCCCeeeECCCCcCCEEEECCCcccc---------------ccceeEEEECCEEEeCCCCc
Confidence 9999999889999999999999999986542 25899999999999997653
|
| >2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=292.40 Aligned_cols=354 Identities=17% Similarity=0.132 Sum_probs=224.5
Q ss_pred cceeEEEecEE-EeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCC-CeEEeCCCCEEeecccccccccchhhhc
Q 011766 18 SSTMILHNAVI-VTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMA-DQIIDLQSQILLPGFVNTHVHTSQQLAK 95 (478)
Q Consensus 18 ~~~~~i~n~~I-~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~-~~viD~~G~~v~PGfID~H~H~~~~~~~ 95 (478)
|++++|+|++| +++++...++.+++|+|+||+|++|++..... ..+ .++||++|++|+|||||+|+|+...
T Consensus 1 m~~~li~n~~v~~~~~~~~~~~~~~~v~I~~g~I~~Ig~~~~~~----~~~~~~viD~~g~~v~PGlID~H~H~~~~--- 73 (386)
T 2vun_A 1 MSKTIIKNIGKIVSGDIKSPVLQADTIVVEDGLIAAIGGEELMK----DAGDATIIDAAGSTVTPGLLDTHVHVSGG--- 73 (386)
T ss_dssp -CEEEEESCSEEECSCTTSCEECCSEEEEETTEEEEEESGGGGT----TCTTCEEEECTTCEEEECEEEEEECCCST---
T ss_pred CccEEEeccEEEEcCCCCccccccceEEEECCEEEEecCccccC----CCCCceEEcCCCCEEccceeeccccccCC---
Confidence 35789999999 97654323467889999999999999742211 123 5899999999999999999999421
Q ss_pred cccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCc-----cC--HHHHH--HHHHH---hCCe
Q 011766 96 GIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG-----QH--VSEMA--KAVEL---LGLR 163 (478)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~-----~~--~~~~~--~~~~~---~g~~ 163 (478)
+|. + +........+++++||||+++++. .. ...+. ..... .+.+
T Consensus 74 ---------~~~------------~---~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (386)
T 2vun_A 74 ---------DYA------------P---RQKTMDFISSALHGGVTTMISAGSPHFPGRPKDAAGTKALAITLSKSYYNAR 129 (386)
T ss_dssp ---------TEE------------G---GGTEESHHHHHHTTTEEEEEECCCTTSTTCCCSHHHHHHHHHHHHHHHHHCC
T ss_pred ---------CcC------------h---hHHHHHHHHHHHhCCceEEEeccccccCCChhhHHHHHHHHHHhhccccccc
Confidence 111 0 000011356689999999999652 11 11111 11111 1110
Q ss_pred EEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHH
Q 011766 164 ACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDM 243 (478)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (478)
..++.+..... ... ... .. +.+++....+...++.+.. . ..++++.+.++++.
T Consensus 130 --------~~~~~~~~g~~-~~~-~~~-------------~~-~~~~~~~~~g~~~ik~~~~-~--~~~~~~~l~~~~~~ 182 (386)
T 2vun_A 130 --------PAGVKVHGGAV-ILE-KGL-------------TE-EDFIEMKKEGVWIVGEVGL-G--TIKNPEDAAPMVEW 182 (386)
T ss_dssp --------GGGCEEECCEE-CCC-TTC-------------CH-HHHHHHHHTTCCEEEEETS-S--SCCSHHHHHHHHHH
T ss_pred --------ccceeeccCcc-ccc-CCc-------------CH-HHHHHHHHhCCCeEEEeec-C--CCCCHHHHHHHHHH
Confidence 00000000000 000 000 11 2222322334455654321 1 12578899999999
Q ss_pred HHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeecc----CChhHHHHHHhcCCeEEECccch
Q 011766 244 AREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVW----VNHTEIGLLSRAGVKVSHCPASA 319 (478)
Q Consensus 244 a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~----~~~~~~~~~~~~~~~~~~~p~~~ 319 (478)
|++.|+++.+|+.+...... ....+......+. + .+.|+.. ++++.++++++.|+.+..++...
T Consensus 183 a~~~g~~v~~H~~~~~~~~~--------~~~~i~~~~~~G~---~-~i~H~~~~~~~~~~~~~~~~~~~g~~vl~~~~~g 250 (386)
T 2vun_A 183 AHKHGFKVQMHTGGTSIPGS--------STVTADDVIKTKP---D-VVSHINGGPTAISVQEVDRIMDETDFAMEIVQCG 250 (386)
T ss_dssp HHHTTCEEEEECSCCSCSTT--------CSCCHHHHHHHCC---S-EEETTTCSSSCCCHHHHHHHHHHCCCEEEEESSS
T ss_pred HHHCCCeEEEecCCcccccc--------CHHHHHHHHHcCC---C-EEEEccCCCCCCCHHHHHHHHHcCCeEEEeccCC
Confidence 99999999999974321100 0011222222332 2 4799988 88999999999998773332211
Q ss_pred hhccCCCcHHHHHHCCC--cEEEcCCCC-CC--CCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHH
Q 011766 320 MRMLGFAPIKEMLHADI--CVSLGTDGA-PS--NNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGA 394 (478)
Q Consensus 320 ~~~~~~~~~~~~~~~gv--~v~~gsD~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA 394 (478)
.......+++.+++.|+ +++++||++ .. .....+..+++... ..++|++++++++|.|||
T Consensus 251 ~~~~~~~~~~~~~~~g~~d~v~lgTD~p~~~~~~~~g~~~~~~~~~~---------------~~~ls~~~~~~~~T~n~A 315 (386)
T 2vun_A 251 NPKIADYVARRAAEKGQLGRVIFGNDAPSGTGLIPLGILRNMCQIAS---------------MSDIDPEVAVCMATGNST 315 (386)
T ss_dssp CHHHHHHHHHHHHHHTCGGGEEEECCBSBTTBBCTTHHHHHHHHHHH---------------HSCCCHHHHHHHHTHHHH
T ss_pred cccccHHHHHHHHHcCCCceeEEecCCCCCCCCCcchhHHHHHHHHh---------------hcCCCHHHHHHHHhHHHH
Confidence 02234567889999999 999999984 21 11223344443221 125999999999999999
Q ss_pred HHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeec
Q 011766 395 KSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILL 461 (478)
Q Consensus 395 ~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~ 461 (478)
+++|+ ++|+|++|++|||||+|.++. .+..+++..+.+ ....+|..||++|++|+++|+...
T Consensus 316 ~~lgl--~~G~i~~G~~ADlvv~d~~~~--~~~~~~~~~~~~-~~~~~v~~v~v~G~~v~~~~~~~~ 377 (386)
T 2vun_A 316 AVYGL--NTGVIAPGKEADLIIMDTPLG--SVAEDAMGAIAA-GDIPGISVVLIDGEAVVTKSRNTP 377 (386)
T ss_dssp HHHTC--SCSSCSTTSBCCEEEEECBTT--CSCSSHHHHHHH-TCCCEEEEEEETTEEEESSCSSSC
T ss_pred HHcCC--CceeeCCCCeeCEEEECCCcc--cccchhHHHhhc-cCCCceeEEEECCEEEeecCcCCC
Confidence 99999 479999999999999999864 356677777766 445689999999999999998876
|
| >1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-37 Score=305.44 Aligned_cols=373 Identities=17% Similarity=0.168 Sum_probs=225.1
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccc
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~ 97 (478)
|++++|+|++|++++ .. .+++|+|+||+|++|++..+. ..+.++||++|++|+|||||+|+|+.....
T Consensus 1 m~~~li~~~~v~~~~---~~-~~~~v~I~~g~I~~ig~~~~~-----~~~~~viD~~g~~v~PGlID~H~H~~~~~~--- 68 (458)
T 1gkr_A 1 MFDVIVKNCRLVSSD---GI-TEADILVKDGKVAAISADTSD-----VEASRTIDAGGKFVMPGVVDEHVHIIDMDL--- 68 (458)
T ss_dssp CEEEEEEEEEEEETT---EE-EEEEEEEETTEEEEEESCCTT-----CCEEEEEECTTCEEEECEEEEEEECCCGGG---
T ss_pred CceEEEECcEEECCC---Cc-eeeeEEEECCEEEEecCCCCC-----CCCCeEEeCCCCEEecCEEEeeecccCCCC---
Confidence 357899999999754 22 678999999999999975321 123579999999999999999999953210
Q ss_pred cCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCC-ccC----HHH----HHHHHHHhCCeEEEec
Q 011766 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG-GQH----VSE----MAKAVELLGLRACLVQ 168 (478)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~-~~~----~~~----~~~~~~~~g~~~~~~~ 168 (478)
+ . +.++. ....+.++++||||+++++ ... ... ..+.....++....
T Consensus 69 --------------~--~---~~~~~----~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 123 (458)
T 1gkr_A 69 --------------K--N---RYGRF----ELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQRLKVDFAL-- 123 (458)
T ss_dssp --------------T--T---TSCCH----HHHHHHHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEE--
T ss_pred --------------C--C---chhHH----HHHHHHHHcCCEEEEEeCCCCCCCCCCcHHHHHHHHHHhhhCceeEEE--
Confidence 0 0 01111 1233457899999999976 321 111 11222222221110
Q ss_pred ccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccc---cccCCHHHHHHHHHHHH
Q 011766 169 STMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQ---IMNATDRLLLETRDMAR 245 (478)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~a~ 245 (478)
.. + . ...... +..++++ .+...++++..++. .+..+.+.+.++++.++
T Consensus 124 --~~-~--~--------~~~~~~------------~~~~~~~----~g~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~a~ 174 (458)
T 1gkr_A 124 --YG-G--G--------VPGNLP------------EIRKMHD----AGAVGFKSMMAASVPGMFDAVSDGELFEIFQEIA 174 (458)
T ss_dssp --EE-E--C--------CTTCHH------------HHHHHHH----TTCCEEEEESSCSBTTTBCBCCHHHHHHHHHHHH
T ss_pred --Ee-c--c--------CCCCHH------------HHHHHHH----cCCcEEEEeecccCCCCcccCCHHHHHHHHHHHH
Confidence 00 0 0 000011 3333332 23445665555443 35678999999999999
Q ss_pred HcCCceeEeccCChhhhHH--HhhhcCCCCchHHHH------------hh----hCCCCCCeeeeeeccCCh-hHHHHHH
Q 011766 246 EFKTGIHMHVAEIPYENQV--VMDTRKVDHGTVTFL------------DK----IEFLQNNLLSAHTVWVNH-TEIGLLS 306 (478)
Q Consensus 246 ~~~~~v~~H~~~~~~~~~~--~~~~~~~~~~~~~~l------------~~----~~~~~~~~~i~h~~~~~~-~~~~~~~ 306 (478)
++++++++|+.+....... .....+.. .....+ .. ....+. ..|++|++. .+++.+.
T Consensus 175 ~~g~~v~~H~~~~~~~~~~~~~~~~~G~~-~~~~h~~~~~~~~~~~~~~~~~~la~~~g~---~~h~~H~~~~~~~~~i~ 250 (458)
T 1gkr_A 175 ACGSVIVVHAENETIIQALQKQIKAAGGK-DMAAYEASQPVFQENEAIQRALLLQKEAGC---RLIVLHVSNPDGVELIH 250 (458)
T ss_dssp HHTCEEEEECCCHHHHHHHHHHHHHTTCC-SHHHHHHHSCHHHHHHHHHHHHHHHHHHCC---EEEECCCCSHHHHHHHH
T ss_pred HcCCEEEEECCCHHHHHHHHHHHhhcCcc-chhhccccCCHHHHHHHHHHHHHHHHHhCC---CEEEEeCCCHHHHHHHH
Confidence 9999999999653322111 11111110 011111 11 111122 235555553 4455444
Q ss_pred ---hcC--CeEEECccchhh-----------cc---------CCCcHHHHHHCCCcEEEcCCCCCCCCC------cCHHH
Q 011766 307 ---RAG--VKVSHCPASAMR-----------ML---------GFAPIKEMLHADICVSLGTDGAPSNNR------MSIVD 355 (478)
Q Consensus 307 ---~~~--~~~~~~p~~~~~-----------~~---------~~~~~~~~~~~gv~v~~gsD~~~~~~~------~~~~~ 355 (478)
+.| +.+.+||..... .. ...++.++++.|+.+++|||+.+.... .+++.
T Consensus 251 ~~~~~G~~v~~~~~p~~~~~~~~~~~~~~~~~~~~pp~r~~~~~~~l~~~~~~G~~~~lgtD~~~~~~~~k~~g~~~~~~ 330 (458)
T 1gkr_A 251 QAQSEGQDVHCESGPQYLNITTDDAERIGPYMKVAPPVRSAEMNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWK 330 (458)
T ss_dssp HHHHTTCCEEEEECHHHHSCCGGGHHHHGGGGCCSSCCCCHHHHHHHHHHHHHTCCCEECCCEECCCGGGTGGGGTCGGG
T ss_pred HHHHCCCcEEEEEchHHheeCHHHhhccCceEEEcCCCCCHHHHHHHHHHHhCCCceEEEeCCCCCChHHhccccCCHhH
Confidence 366 567778864210 01 122456788999999999998655322 23333
Q ss_pred --------HHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCc
Q 011766 356 --------EMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPV 427 (478)
Q Consensus 356 --------~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~ 427 (478)
++......... ....++|++++++++|.|||+++|+++++|+|++|++|||||+|.+.....+.
T Consensus 331 ~~~~~~g~~~~l~~~~~~~--------~~~~~l~~~~al~~~T~~~A~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~ 402 (458)
T 1gkr_A 331 AGNGALGLETSLPMMLTNG--------VNKGRLSLERLVEVMCEKPAKLFGIYPQKGTLQVGSDADLLILDLDIDTKVDA 402 (458)
T ss_dssp SCCCBCCTTTHHHHHHHHT--------GGGTSSCHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEEESCCCEECCG
T ss_pred CCCCcccHHHHHHHHHHHH--------HHhCCCCHHHHHHHHhhhHHHHhCCCCCCccCCCCCcCCEEEEcCCcceEEcH
Confidence 12222222110 01236999999999999999999998788999999999999999986544444
Q ss_pred CChhhhhhhccC-----CCCeeEEEEccEEEEECCeeecccH-HHHH
Q 011766 428 HDRITSLVYCMR-----TENVVSVMCNGQWVMKNKKILLLMR-GRLF 468 (478)
Q Consensus 428 ~d~~~~~~~~~~-----~~~v~~v~v~G~~v~~~g~~~~~~~-~~~~ 468 (478)
.++.+...+... ..+|..||++|++||++|++++... |+++
T Consensus 403 ~~~~~~~~~~~~~g~~~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~~ 449 (458)
T 1gkr_A 403 SQFRSLHKYSPFDGMPVTGAPVLTMVRGTVVAEKGEVLVEQGFGQFV 449 (458)
T ss_dssp GGCSSSCCCCTTTTCEECCEEEEEEETTEEEEETTEECSCTTCCCBC
T ss_pred HHccccCCCCCcCCCEeeeEEEEEEECCEEEEECCccccCCCCCeec
Confidence 444444333221 3579999999999999999988765 7665
|
| >1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-37 Score=306.60 Aligned_cols=380 Identities=15% Similarity=0.177 Sum_probs=225.8
Q ss_pred eeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccC
Q 011766 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (478)
Q Consensus 20 ~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~ 99 (478)
+++|+|++|+++++ . .+++|+|+||||++|++..+. ..+.++||++|++|+|||||+|+|+....
T Consensus 1 ~~li~n~~vv~~~~---~-~~~~v~I~~g~I~~ig~~~~~-----~~~~~viD~~G~~v~PGlID~H~H~~~~~------ 65 (458)
T 1gkp_A 1 PLLIKNGEIITADS---R-YKADIYAEGETITRIGQNLEA-----PPGTEVIDATGKYVFPGFIDPHVHIYLPF------ 65 (458)
T ss_dssp CEEEESCEEEETTE---E-EECEEEESSSBCCEEESCCCC-----CTTCEEEECTTSEEEECEEEEEECSSCEE------
T ss_pred CEEEEeeEEECCCC---c-eEeeEEEECCEEEEecCCCCC-----CCCCeEEECCCCEEecCEEecccCCCcCC------
Confidence 36899999997542 2 568999999999999975321 12458999999999999999999995421
Q ss_pred CCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc----CHHHHHHHH-HHhCCeEEEecccccCC
Q 011766 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ----HVSEMAKAV-ELLGLRACLVQSTMDCG 174 (478)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~----~~~~~~~~~-~~~g~~~~~~~~~~~~~ 174 (478)
......++.+ ...+.++++||||+++++.. ......+.. ....-+...........
T Consensus 66 ---------------~~~~~~~~~~----~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (458)
T 1gkp_A 66 ---------------MATFAKDTHE----TGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSYCDYTFHMAV 126 (458)
T ss_dssp ---------------TTEECSCCHH----HHHHHHHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHTTTCSSEEEEEEEC
T ss_pred ---------------CCCcCHhHHH----HHHHHHHhCCccEEEeCCCCCCCCCHHHHHHHHHHHhccCceeeEEEEEee
Confidence 0001111211 12345689999999996432 222222221 11111110000000000
Q ss_pred CCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEe
Q 011766 175 EGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMH 254 (478)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H 254 (478)
+ ...+ +..+.++++...+...++....++..+.++++.+.++++.+++.++++++|
T Consensus 127 ---~-----~~~~----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H 182 (458)
T 1gkp_A 127 ---S-----KFDE----------------KTEGQLREIVADGISSFKIFLSYKNFFGVDDGEMYQTLRLAKELGVIVTAH 182 (458)
T ss_dssp ---C-----CCCT----------------THHHHHHHHHHTTCCEEEEEECSTTTTBCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred ---c-----CCch----------------hhHHHHHHHHHhCCCEEEEEeccCCCcCCCHHHHHHHHHHHHhcCCEEEEE
Confidence 0 0000 112222222222444566666666667788999999999999999999999
Q ss_pred ccCChhhhHHHhh-h--cCCC-------CchH--------HHHhhhCCCCCCeeeeeeccC-ChhHHHHHHhcCCeE--E
Q 011766 255 VAEIPYENQVVMD-T--RKVD-------HGTV--------TFLDKIEFLQNNLLSAHTVWV-NHTEIGLLSRAGVKV--S 313 (478)
Q Consensus 255 ~~~~~~~~~~~~~-~--~~~~-------~~~~--------~~l~~~~~~~~~~~i~h~~~~-~~~~~~~~~~~~~~~--~ 313 (478)
+. .......... . .+.. ..+. ..+...+..+.+..+.|...- ..+.++.+++.|+.+ .
T Consensus 183 ~e-~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~H~~~~~~~~~i~~~~~~G~~v~~~ 261 (458)
T 1gkp_A 183 CE-NAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLSCKPALDAAMAAKARGVPIYIE 261 (458)
T ss_dssp ES-CHHHHHHHHHHHHHTTCCSGGGTTTTSCHHHHHHHHHHHHHHHHHHTCEEEECSCCSHHHHHHHHHHHHTTCCEEEE
T ss_pred cC-CHHHHHHHHHHHHhcCCCChhhccCcCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHcCCeEEEE
Confidence 94 3333222111 0 1110 0011 122222334455555554321 124577888888765 5
Q ss_pred ECcc------chhhc--------cCCCc---------HHHHHHCCCcEEEcCCCCCCCCC------cCHHH--------H
Q 011766 314 HCPA------SAMRM--------LGFAP---------IKEMLHADICVSLGTDGAPSNNR------MSIVD--------E 356 (478)
Q Consensus 314 ~~p~------~~~~~--------~~~~~---------~~~~~~~gv~v~~gsD~~~~~~~------~~~~~--------~ 356 (478)
+||. .++.. ...+| +.++++.|+.+++|||+.+.... .+++. +
T Consensus 262 ~~p~~~~~~~~~~~~~~~~g~~~~~~~p~r~~~~~~~l~~~~~~G~~~~~gtD~~~~~~~~k~~~~~~~~~~~~g~~g~~ 341 (458)
T 1gkp_A 262 SVIPHFLLDKTYAERGGVEAMKYIMSPPLRDKRNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIE 341 (458)
T ss_dssp EEHHHHHCCGGGGGSCHHHHHTTCCSSCCCCTHHHHHHHHHHHTTSSCEEECCBCCCCHHHHGGGSSCGGGSCCCBCCTT
T ss_pred ecccceeeCHHHhcccccCCcceEEeCCCCCHHHHHHHHHHHhcCCeeEEECCCCCCCHHHhhcccCChhhCCCCcccHH
Confidence 7776 33321 01233 33688999999999998765311 01111 2
Q ss_pred HHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCC-------
Q 011766 357 MYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHD------- 429 (478)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d------- 429 (478)
+.+..+..... ....+|++++++++|.|||++||+++++|+|++|++|||||+|.+.....+..+
T Consensus 342 ~~l~~~~~~~~--------~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~ 413 (458)
T 1gkp_A 342 DRVNLLYTYGV--------SRGRLDIHRFVDAASTKAAKLFGLFPRKGTIAVGSDADLVVYDPQYRGTISVKTQHVNNDY 413 (458)
T ss_dssp THHHHHHHHHT--------TSSSCCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEETTCCEECCGGGCCSSSSC
T ss_pred HHHHHHHHHHH--------HcCCCCHHHHHHHHhhCHHHHhCCCCCCCcCCCCCcCCEEEEeCCCCeEEchHHcccccCC
Confidence 33322221110 122499999999999999999999877999999999999999998654333222
Q ss_pred -hhhhhhhccCCCCeeEEEEccEEEEECCeeecccH-HHHHH
Q 011766 430 -RITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMR-GRLFQ 469 (478)
Q Consensus 430 -~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~-~~~~~ 469 (478)
|+..+. ...+|..||++|++||++|++++... |++++
T Consensus 414 ~p~~g~~---~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~~~ 452 (458)
T 1gkp_A 414 NGFEGFE---IDGRPSVVTVRGKVAVRDGQFVGEKGWGKLLR 452 (458)
T ss_dssp CTTTTCE---ESCEEEEEEETTEEEEETTEECCCTTCCCBCC
T ss_pred CccCCCE---EeeEEEEEEECCEEEEECCeeccCCCCceecc
Confidence 222211 13579999999999999999988765 87763
|
| >2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase; HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3 c.1.9.6 PDB: 2fvk_A* 2fvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-36 Score=301.70 Aligned_cols=389 Identities=15% Similarity=0.167 Sum_probs=228.7
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccc
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~ 97 (478)
+++++|+|++|+++++ . .+++|+|+||+|++|++..+. ..+.++||++|++|+|||||+|+|+.+....+
T Consensus 2 ~m~~li~n~~vv~~~~---~-~~~~v~I~~g~I~~Ig~~~~~-----~~~~~viD~~g~~v~PGlID~H~H~~~~~~~~- 71 (559)
T 2fty_A 2 IYDLIIKNGIICTASD---I-YAAEIAVNNGKVQLIAASIDP-----SLGSEVIDAEGAFITPGGIDAHVHVDEPLKLL- 71 (559)
T ss_dssp CEEEEEESCEEECSSC---E-EECEEEEETTEEEEEESCCCG-----GGEEEEEECTTCEEEECEEECCBCCCCTTCTT-
T ss_pred CceEEEECcEEEcCCC---c-eeeeEEEECCEEEEecCCCCC-----CCCCeEEeCCCCEEEcCEEeeccCcCcccccc-
Confidence 5689999999997542 2 578999999999999975321 02457999999999999999999995432100
Q ss_pred cCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC-----HHHHHHHH----HHhCCe-EEEe
Q 011766 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-----VSEMAKAV----ELLGLR-ACLV 167 (478)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~-----~~~~~~~~----~~~g~~-~~~~ 167 (478)
. ...++. ....+.++++||||+++++... .....+.+ ...+.+ ..+.
T Consensus 72 ------------------~-~~~e~~----~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 128 (559)
T 2fty_A 72 ------------------G-DVVDTM----EHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQTLYCD 128 (559)
T ss_dssp ------------------S-CCSCCH----HHHHHHHHHTTEEEEEEEEECCTTCCSTTHHHHHHHHHHHHHTTSCCSSE
T ss_pred ------------------C-CCHHHH----HHHHHHHHhCcEEEEEECcCcccCCcchHHHHHHHHHHHHHHHhhcceeE
Confidence 0 011121 1234557899999999976432 11133333 444432 1100
Q ss_pred cccccCCCCCCCcccccCCcc---cCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHH
Q 011766 168 QSTMDCGEGLPASWAVRTTDD---CIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMA 244 (478)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a 244 (478)
...... . ..+.. ...+ .. ..+..++++++ +...++++..++. +.++.+.+.++++.|
T Consensus 129 ~~~~~~---~-~~~~~-~~~~~g~~l-----------~~~~~~l~~~~---G~~~iki~~~~~~-~~~s~e~l~~~~~~A 188 (559)
T 2fty_A 129 YGLHLI---L-FQIEK-PSVEARELL-----------DVQLQAAYNDY---GVSSVKMFMTYPG-LQISDYDIMSAMYAT 188 (559)
T ss_dssp EEEEEE---C-CCCCS-SHHHHHHHH-----------HHHHHHHHHHH---CCCEEEEESSSTT-TBCCHHHHHHHHHHH
T ss_pred EEeeee---e-ccCcC-CCchhhhhH-----------HHHHHHHHHHC---CCCEEEEEecCCC-CcCCHHHHHHHHHHH
Confidence 000000 0 00000 0000 01 01333334332 3456776666655 578899999999999
Q ss_pred HHcCCceeEeccCChhhhHHH--hhhcCCCC-------ch-------H-HHHhhhCCCCCCeeeeeeccCChhHHH---H
Q 011766 245 REFKTGIHMHVAEIPYENQVV--MDTRKVDH-------GT-------V-TFLDKIEFLQNNLLSAHTVWVNHTEIG---L 304 (478)
Q Consensus 245 ~~~~~~v~~H~~~~~~~~~~~--~~~~~~~~-------~~-------~-~~l~~~~~~~~~~~i~h~~~~~~~~~~---~ 304 (478)
+++|+++++|+.+........ ....+... .+ + ..+......+.+..+.|.. +.+.++ +
T Consensus 189 ~~~g~~v~~H~e~~~~i~~~~~~~~~~G~~~~~~~~~~~p~~~E~~av~~~i~la~~~g~~vhi~H~s--~~~~~~~i~~ 266 (559)
T 2fty_A 189 RKNGFTTMLHAENGDMVKWMIEALEEQGLTDAYYHGVSRPSIVEGEATNRAITLATTMDTPILFVHVS--SPQAAEVIKQ 266 (559)
T ss_dssp HHHTCEEEEECCCHHHHHHHHHHHHHTTCCSTTHHHHTSCHHHHHHHHHHHHHHHHHTTCCEEECSCC--CHHHHHHHHH
T ss_pred HhCCCEEEEECCChHHHHHHHHHHHhcCCCChhhcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEcCC--CHHHHHHHHH
Confidence 999999999996543211110 01111100 00 0 1111112233444444443 233344 4
Q ss_pred HHhcCCeE--EECccchhh-----------------------------------------ccCC---------CcHHHHH
Q 011766 305 LSRAGVKV--SHCPASAMR-----------------------------------------MLGF---------APIKEML 332 (478)
Q Consensus 305 ~~~~~~~~--~~~p~~~~~-----------------------------------------~~~~---------~~~~~~~ 332 (478)
+++.|+.+ .+||..... ..-. .++.+++
T Consensus 267 ak~~G~~Vt~e~~p~~l~l~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~PplR~~~~~~~l~~~l 346 (559)
T 2fty_A 267 AQTKGLKVYAETCPQYALLSDAITRCHHHGEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGM 346 (559)
T ss_dssp HHHTTCCEEEEECHHHHHCCGGGGSCC--------CCSCCGGGCSSSTTTCTTCTTGGGGGCCSSCCCCTTSHHHHHHHH
T ss_pred HHHcCCceEEeecCcccccCHHHhhccccccccccccccCccccccccccccCccccccCcEECCCCCCHHHHHHHHHHH
Confidence 44567554 788872110 0001 1366789
Q ss_pred HCCCcEEEcCCCCCCCCC-------------------cCHHH--------HHHHHHHHhcccccccCCCCCCCCC-CHHH
Q 011766 333 HADICVSLGTDGAPSNNR-------------------MSIVD--------EMYLASLINKGREVFANGTTDPAAL-PAET 384 (478)
Q Consensus 333 ~~gv~v~~gsD~~~~~~~-------------------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l-s~~~ 384 (478)
++|+.++++||+.++... .+++. +++...+.... .....+ |+++
T Consensus 347 ~~G~~~~igTD~~p~~~~~k~~~~~k~~~~~~~~~~~~~f~~~~~G~~g~e~~l~~ll~~~--------v~~~~l~~~~~ 418 (559)
T 2fty_A 347 NNGTFTIVGSDHCSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRMPLLYDYG--------YLRGNLTSMMK 418 (559)
T ss_dssp HTTSCSEECCCBCCCBSSCCSSTTBGGGGEEGGGTEESCGGGSCCCBCCTTTHHHHHHHHT--------TTTTSSSCHHH
T ss_pred hcCceEEEEeCCCCCChhhccccccccccccccccccCCHhhCCCCCccHHHHHHHHHHHH--------HHcCCCCCHHH
Confidence 999999999999776432 12322 33333322211 112358 9999
Q ss_pred HHHHHhHHHHHHcCCCCCccccccC-ccccEEEEcCCC--------CCCCCcCChhhhhhhcc-----CCCCeeEEEEcc
Q 011766 385 VLRMATINGAKSVLWDNDIGSLEAG-KKADMVVVDPFS--------WPMVPVHDRITSLVYCM-----RTENVVSVMCNG 450 (478)
Q Consensus 385 al~~~T~~pA~~lgl~~~~G~l~~G-~~ADlvv~d~~~--------~~~~~~~d~~~~~~~~~-----~~~~v~~v~v~G 450 (478)
+++++|.|||+++|+++++|+|++| ++|||||||.+. ....+.++..+...+.. -..+|..||++|
T Consensus 419 ~~~~~t~~~A~~lgl~~~~G~i~~G~~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~s~~~~sp~~g~~~~g~v~~t~v~G 498 (559)
T 2fty_A 419 LVEIQCTNPAKVYGMYPQKGSILPGVSDADLVIWYPDDSKKEYNSKPKLITNKLMEHNCDYTPFEGIEIKNWPRYTIVKG 498 (559)
T ss_dssp HHHHHTHHHHHHTTCTTTSSSCCTTTSBCCEEEECCSSCCCCCTTSCSBCCTGGGTSSCSCCTTTTCBCSCCEEEEEETT
T ss_pred HHHHHhHHHHHHhCCCCCCceeeccCCcCCEEEEeCcccccccCCccEEEchHHhcccCCCCCccCCEecceEEEEEECC
Confidence 9999999999999998778999999 999999999985 33333333333211111 135799999999
Q ss_pred EEEEECCeeeccc-HHHHHH
Q 011766 451 QWVMKNKKILLLM-RGRLFQ 469 (478)
Q Consensus 451 ~~v~~~g~~~~~~-~~~~~~ 469 (478)
++||++|++++.. .|++++
T Consensus 499 ~~v~~~g~~~~~~~~G~~~~ 518 (559)
T 2fty_A 499 KIVYKEGEILKENADGKYLK 518 (559)
T ss_dssp EEEEETTEECGGGCCCCBCC
T ss_pred EEEEECCeeccCCcCCeeec
Confidence 9999999998764 366654
|
| >3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=292.68 Aligned_cols=362 Identities=15% Similarity=0.110 Sum_probs=226.5
Q ss_pred eeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccc--
Q 011766 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI-- 97 (478)
Q Consensus 20 ~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~-- 97 (478)
.++|+|++|+|+++.. ...++|+|+||||++||+..++.......++++||++|++|+|||||+|+|+........
T Consensus 37 ~~li~ng~I~t~~~~~--~~~~~v~v~~g~I~~vg~~~~~~~~~~~~~~~viD~~G~~v~PGfiD~H~H~~~~g~~~~~~ 114 (534)
T 3icj_A 37 MKALINGTIYTSFSPV--KKVSGLVISNERVLYAGDSSTALRIAELAGGEIIDLKGKFVMPAFFDSHLHLDELGMSLEMV 114 (534)
T ss_dssp EEEEESSEEEEEETTE--EEESEEEEETTEEEEEECHHHHHHHHHHHTCEEEECTTCEEEECEEEEEECHHHHHHHHHSE
T ss_pred CEEEECCEEECCCCCC--ceeeEEEEECCEEEEEcChHHHHhhccCCCCEEEECCCCEEecCEeehhhhhhhhhhhcCcc
Confidence 4789999999987642 235699999999999998665422110135689999999999999999999865332110
Q ss_pred --cCCCCchH-----------Hhhhcccccc-------------------------------------------------
Q 011766 98 --ADDVDLMT-----------WLHDRIWPYE------------------------------------------------- 115 (478)
Q Consensus 98 --~~~~~~~~-----------~~~~~~~~~~------------------------------------------------- 115 (478)
....+..+ |+.+..|...
T Consensus 115 dl~~~~s~~e~~~~l~~~~~~wi~g~G~~~~~~~~~pt~~~LD~~~~Pv~l~~~~~H~~~~Ns~AL~~~gi~~t~~p~G~ 194 (534)
T 3icj_A 115 DLRGVKSMEELVERVKKGRGRIIFGFGWDQDELGRWPTREDLDVIDRPVFLYRRCFHVAVMNSKMIDLLNLKPSKDFDES 194 (534)
T ss_dssp ECTTCCSHHHHHHHHHTCCSSSEEEEEECHHHHSSCCCHHHHTTSSSCEEEEETTSSEEEECHHHHHHHCCCCCTTEETT
T ss_pred CCCCCCCHHHHHHHHHHHHhhCEEEcccCHHHhcCCCCHHHHhhCCCeEEEEecCCcHhHHhHHHHHHcCCCCCCCCCCC
Confidence 00001000 2211111100
Q ss_pred ----------------CC-C-ChHHHHHHHHHHHHHHHhcCcceeecCCcc-CHHHHHHHHHHh---CCeEEEecccccC
Q 011766 116 ----------------SN-M-TEEDSYISTLLCGIELIHSGVTCFAEAGGQ-HVSEMAKAVELL---GLRACLVQSTMDC 173 (478)
Q Consensus 116 ----------------~~-~-~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~-~~~~~~~~~~~~---g~~~~~~~~~~~~ 173 (478)
+. . +.++.........+.+.+.|||++.+++.. ........+... .++....... .
T Consensus 195 tG~l~e~A~~~v~~~~p~~~l~~~~~~~~l~~a~~~~~~~GiTsv~d~~~~~~~~~~~~~l~~~g~l~~rv~~~~~~-~- 272 (534)
T 3icj_A 195 TGIVRERALEESRKIINEKILTVKDYKHYIESAQEHLLSLGVHSVGFMSVGEKALKALFELEREGRLKMNVFAYLSP-E- 272 (534)
T ss_dssp TTEEEHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEECHHHHHHHHHHHHTTCCCSEEEEEECG-G-
T ss_pred CceeeHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHHHhCCCCcEEEEEecCH-H-
Confidence 00 1 223333344456778899999999997532 111223333332 3443221100 0
Q ss_pred CCCCCCcccccCCcccCCCCCCcccccc---ch-----hHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHH
Q 011766 174 GEGLPASWAVRTTDDCIQPDSSISFNFV---SS-----SQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAR 245 (478)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~ 245 (478)
... .+.......... ..+.+..+ .. ....+.+.|... .+..+....+++.+.++++.|+
T Consensus 273 --~~~-~~~~~~~~~~~~--~~~~~~gvK~~~DG~~~~~tA~l~~pY~d~--------~~~~g~~~~~~e~l~~~v~~A~ 339 (534)
T 3icj_A 273 --LLD-KLEELNLGKFEG--RRLRIWGVKLFVDGSLGARTALLSEPYTDN--------PTTSGELVMNKDEIVEVIERAK 339 (534)
T ss_dssp --GHH-HHHHHTCCSEEC--SSEEEEEEEEESCCCTTTTCSCCSSCBTTB--------TTCCCCCSSCHHHHHHHHHHHT
T ss_pred --HHH-HHHHhccccCCC--CcEEEEeEEEEEeCCCCccchhhcCCccCC--------CCCCCcccCCHHHHHHHHHHHH
Confidence 000 000000000000 00000000 00 000000000000 0113344578999999999999
Q ss_pred HcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchh-----
Q 011766 246 EFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAM----- 320 (478)
Q Consensus 246 ~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~----- 320 (478)
+.|+++++|+.+...... .+..+...+ .+..+.|+.++++++++++++.|+.+++||..+.
T Consensus 340 ~~G~~v~~Ha~gd~ai~~-----------~l~a~~~~~---~r~~ieH~~~~~~e~i~~la~~gv~~~~~P~~~~~~~~~ 405 (534)
T 3icj_A 340 PLGLDVAVHAIGDKAVDV-----------ALDAFEEAE---FSGRIEHASLVRDDQLERIKELKVRISAQPHFIVSDWWI 405 (534)
T ss_dssp TTTCEEEEEECSHHHHHH-----------HHHHHHHHT---CCCEEEECCBCCHHHHHHHHHHTCEEEECTTHHHHCTTH
T ss_pred HCCCEEEEEEcChHHHHH-----------HHHHHHhcc---CCCEEEECCCCCHHHHHHHHHcCCeEEEccccccchhHH
Confidence 999999999987654332 222333333 6788999999999999999999999999998753
Q ss_pred -------hccCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHH
Q 011766 321 -------RMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATING 393 (478)
Q Consensus 321 -------~~~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~p 393 (478)
+..+..|++.+++. +++++|||++.. +.+++..|+.+... ..+..++++|++|||+++|.++
T Consensus 406 ~~~lg~~r~~~~~p~~~l~~~-v~valGSD~p~~--~~~p~~~~~~av~r--------~~~~~~~~ls~~eaL~~~T~~~ 474 (534)
T 3icj_A 406 VNRVGEERAKWAYRLKTLSSI-TKLGFSTDSPIE--PADPWVSIDAAVNR--------YVVDPGERVSREEALHLYTHGS 474 (534)
T ss_dssp HHHHHHHHGGGBTCHHHHHHH-SCEEECCTTTTS--CCCHHHHHHHHHHC--------CSSCGGGCCCHHHHHHHTTHHH
T ss_pred HHhhCHHHHhccHHHHHHHHh-CCEEeecCCCCC--CCCHHHHHHHHHhc--------cccCcccCCCHHHHHHHHHHHH
Confidence 22467899999999 999999999654 46889888877643 1234556799999999999999
Q ss_pred HHHcCCCCCccccccCccccEEEEcCCCCCC
Q 011766 394 AKSVLWDNDIGSLEAGKKADMVVVDPFSWPM 424 (478)
Q Consensus 394 A~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~ 424 (478)
|+++|++ ++|+|++||.|||||+|.|++..
T Consensus 475 A~~lg~e-~~GsLe~Gk~ADlvvld~dpl~~ 504 (534)
T 3icj_A 475 AQVTLAE-DLGKLERGFRAEYIILDRDPLKE 504 (534)
T ss_dssp HHHTTCT-TCSCCSTTSBCCEEEESSCTTC-
T ss_pred HHHhCCC-CCeEECCCCCcCEEEECCChhhc
Confidence 9999998 89999999999999999996653
|
| >3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A {Brevibacillus agri} PDB: 1yny_A 1k1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-36 Score=297.65 Aligned_cols=381 Identities=17% Similarity=0.214 Sum_probs=225.9
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcccc
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~ 98 (478)
|+++|+|++|++++ . ..+++|+|+||+|++|++... ..+.++||++|++|+|||||+|+|+.....
T Consensus 1 M~~~i~n~~v~~~~---~-~~~~~v~i~~g~I~~i~~~~~------~~~~~viD~~g~~v~PG~ID~H~H~~~~~~---- 66 (461)
T 3sfw_A 1 MKKWIRNGTVVTAS---D-TYQADVLIDGEKVVAIGSDLQ------ATDAEVIDATGYYLLPGGIDPHTHLDMPFG---- 66 (461)
T ss_dssp CEEEEESCEEECSS---C-EEECEEEEETTEEEEEESCCC------CSSCEEEECTTCEEEECEEEEEECTTCEET----
T ss_pred CcEEEECeEEECCC---C-cEEEEEEEECCEEEEEeCCCC------CCCCeEEECCCCEEEeeeEEeEeccCcCCC----
Confidence 46899999999743 2 356799999999999997542 136689999999999999999999953210
Q ss_pred CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC----HHHHHHH-HHHhCCeEEEecccccC
Q 011766 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH----VSEMAKA-VELLGLRACLVQSTMDC 173 (478)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~----~~~~~~~-~~~~g~~~~~~~~~~~~ 173 (478)
.....+.. ....+.++++||||+++++... .....+. .....-+..........
T Consensus 67 -----------------~~~~~e~~----~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 125 (461)
T 3sfw_A 67 -----------------GTVTSDNF----FTGTKAAAFGGTTSIVDFCLTSKGESLHSAIATWHEKARGKAVIDYGFHLM 125 (461)
T ss_dssp -----------------TEECSCCH----HHHHHHHHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHTTTCSSEEEEEEE
T ss_pred -----------------CcccHhHH----HHHHHHHHhCCEEEEEccCCCCCcchHHHHHHHHHHHhhcCcEEEEEEEEE
Confidence 00011111 1233557899999999865321 2222221 11111111000000000
Q ss_pred CCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcC-CCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCcee
Q 011766 174 GEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHH-AADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIH 252 (478)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~ 252 (478)
.. . ... +..+.++++.. .+...++.+..+...+..+.+.+.++++.++++|.++.
T Consensus 126 ---~~-~----~~~----------------~~~~~~~~l~~~~G~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~ 181 (461)
T 3sfw_A 126 ---VS-D----AND----------------HVLEELESVVNNEGITSLKVFMAYKNVLMADDETLFKTLIRAKELGALVQ 181 (461)
T ss_dssp ---CS-C----CCH----------------HHHHHHHHHHHTSCCCEEEEESSSTTTTBCCHHHHHHHHHHHHHHTCEEE
T ss_pred ---Ee-C----CCH----------------HHHHHHHHHHHhCCCCEEEEEEecCCCcccCHHHHHHHHHHHHhcCCEEE
Confidence 00 0 001 22333333333 45555666555555566789999999999999999999
Q ss_pred EeccCChhhhHHHhhhc--CCC--------Cc-------hHHHHhhhCCCCCCeeeeeeccCCh----hHHHHHHhcCCe
Q 011766 253 MHVAEIPYENQVVMDTR--KVD--------HG-------TVTFLDKIEFLQNNLLSAHTVWVNH----TEIGLLSRAGVK 311 (478)
Q Consensus 253 ~H~~~~~~~~~~~~~~~--~~~--------~~-------~~~~l~~~~~~~~~~~i~h~~~~~~----~~~~~~~~~~~~ 311 (478)
+|+.+............ +.. .. ....+......+.+ .|..|++. +.++.+++.|..
T Consensus 182 ~Hae~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~e~~av~~~~~la~~~g~~---~hi~H~s~~~~l~~i~~ak~~G~~ 258 (461)
T 3sfw_A 182 VHAENGDVLDYLTKQALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALADAQ---LYVVHVSCADAVRRIAEAREKGWN 258 (461)
T ss_dssp EECSCHHHHHHHHHHHHHTTCCSTHHHHHTSCHHHHHHHHHHHHHHHHHTTCE---EEECSCCSHHHHHHHHHHHHTTCE
T ss_pred EEcCCHHHHHHHHHHHHhcCCCChhHhcccCCHHHHHHHHHHHHHHHHHhCCC---EEEEecCcHHHHHHHHHHHhcCCc
Confidence 99765332211110000 000 00 00112222222333 35555554 567777777776
Q ss_pred E--EECccchhh--------------ccCCCc---------HHHHHHCCCcEEEcCCCCCCCCCc------CHH------
Q 011766 312 V--SHCPASAMR--------------MLGFAP---------IKEMLHADICVSLGTDGAPSNNRM------SIV------ 354 (478)
Q Consensus 312 ~--~~~p~~~~~--------------~~~~~~---------~~~~~~~gv~v~~gsD~~~~~~~~------~~~------ 354 (478)
+ .+||..... ....+| +.+++..|+.++++||+.++.... +.+
T Consensus 259 vt~e~~ph~l~l~~~~~~~~~~~~~~~~~~Pplr~~~~~~aL~~~l~~G~~~~i~sD~~p~~~~~~k~~~~~~~~~~~~G 338 (461)
T 3sfw_A 259 VYGETCPQYLVLDITALEKPDFEGAKYVWSPPLREKWNQDVLWSALKNGILQTVGSDHCPFNFSGQKELGRRDFTKIPNG 338 (461)
T ss_dssp EEEEECHHHHHCCGGGGGCTTTGGGGGCCSSCCCCTHHHHHHHHHHHTTSSCEECCCBCCCCTTTTGGGGTTCGGGSCCC
T ss_pred EEEeeccceEEEcHHHhcCccccCCcEEEcCCCCChHHHHHHHHHHhcCCceEEECCCCCCCchhhhhcccCCHhhCCCC
Confidence 5 688853211 011233 356788899999999998764111 011
Q ss_pred ---HHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChh
Q 011766 355 ---DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRI 431 (478)
Q Consensus 355 ---~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~ 431 (478)
.+......... .....++|++++++++|.|||+++|+++++|+|++|++|||||+|.+..+..+.++..
T Consensus 339 ~~g~e~~~~~~~~~--------~~~~~~~~~~~~~~~~t~~~a~~~g~~~~~G~l~~G~~Ad~~~~d~~~~~~~~~~~~~ 410 (461)
T 3sfw_A 339 GPIIEDRMTILFSE--------GVRKGKISLNQFVDITSTKVAKLFGMFPQKGTIAVGSDADIVLFDPTVQRTISVETHH 410 (461)
T ss_dssp BCCTTTHHHHHHHH--------TTTTTSSCHHHHHHHHTHHHHHHHTCTTTSSSCSTTSBCCEEEEEEEEEEECCTTTCC
T ss_pred CccHHHHHHHHHHH--------HHHcCCCCHHHHHHHHhHHHHHHcCCCCCCCccCCCCcCCEEEEcCCCCEEEchHHcc
Confidence 11112222211 1123469999999999999999999987899999999999999998843323333333
Q ss_pred hhhhhccC-----CCCeeEEEEccEEEEECCeeeccc-HHHHHH
Q 011766 432 TSLVYCMR-----TENVVSVMCNGQWVMKNKKILLLM-RGRLFQ 469 (478)
Q Consensus 432 ~~~~~~~~-----~~~v~~v~v~G~~v~~~g~~~~~~-~~~~~~ 469 (478)
+...+... ..+|.+||++|++||++|++++.. .|++++
T Consensus 411 ~~~~~sp~~g~~~~~~v~~t~v~G~~v~~~g~~~~~~~~G~~~~ 454 (461)
T 3sfw_A 411 MNVDYNPFEGMQVHGDVISVLSRGAFVVRNKQFVGHAGAGRYVK 454 (461)
T ss_dssp SSSSCCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCCCBCC
T ss_pred cccCCCCCCCCEecceEEEEEECCEEEEECCeeccCCCCceEec
Confidence 32222111 148999999999999999998755 466553
|
| >2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrola 9244B, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-36 Score=293.91 Aligned_cols=370 Identities=18% Similarity=0.171 Sum_probs=216.9
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEE-CCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVV-QDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~-~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~ 95 (478)
.+++++|+|++|+++++. ....+++|+|+ ||||++|++..+. ..+.++||++|++|+|||||+|+|+......
T Consensus 13 ~~~~~li~n~~vv~~~~~-~~~~~~~v~I~~~g~I~~Ig~~~~~-----~~~~~viD~~g~~v~PGlID~H~H~~~~~~~ 86 (417)
T 2ogj_A 13 LQAPILLTNVKPVGFGKG-ASQSSTDILIGGDGKIAAVGSALQA-----PADTQRIDAKGAFISPGWVDLHVHIWHGGTD 86 (417)
T ss_dssp -CCCEEEEEEEECSSCTT-CCCSCEEEEECTTSBEEEEETTCCC-----SSCEEECCC--CEEEECEEEEEECCCBTTBS
T ss_pred CCCcEEEECCEEEcCCCC-ccCccceEEEecCCEEEEeccCCCC-----CCCCeEEECCCCEEccCeeeccccccccccc
Confidence 346899999999975431 13467899999 9999999874321 1245799999999999999999999543211
Q ss_pred cccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc---CHHHHHHHHHH-hC--CeEEEecc
Q 011766 96 GIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ---HVSEMAKAVEL-LG--LRACLVQS 169 (478)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~---~~~~~~~~~~~-~g--~~~~~~~~ 169 (478)
. ..+.. ..++++||||+++++.. ......+.... .. ++.++...
T Consensus 87 ~--------------------~~~~~----------~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 136 (417)
T 2ogj_A 87 I--------------------SIRPS----------ECGAERGVTTLVDAGSAGEANFHGFREYIIEPSRERIKAFLNLG 136 (417)
T ss_dssp S--------------------CCCGG----------GTSGGGTEEEEEEESSCCSTTHHHHHHHTTTTCSSEEEEEEESS
T ss_pred c--------------------CCCHH----------HHHHhCCcCeEEeCCcCCCcCHHHHHHHHhhccccCeEEEeccc
Confidence 0 00111 13689999999997532 22222221111 11 22322211
Q ss_pred cccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCC
Q 011766 170 TMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKT 249 (478)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~ 249 (478)
. .+............ .. ........+.++++.. ....++..........++.+.+.++++++++.|+
T Consensus 137 ~----~G~~~~~~~~e~~~-~~-------~~~~~~~~~~~~~~~~-~~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~ 203 (417)
T 2ogj_A 137 S----IGLVACNRVPELRD-IK-------DIDLDRILECYAENSE-HIVGLKVRASHVITGSWGVTPVKLGKKIAKILKV 203 (417)
T ss_dssp T----TTTTTTTTSCSCSS-GG-------GCCHHHHHHHHHTCTT-TEEEEEEEESHHHHTTCTTHHHHHHHHHHHHHTC
T ss_pred c----CcCCCCCCcccccc-hh-------hcCHHHHHHHHHhCCC-ceEEEEEEecCCccccccHHHHHHHHHHHHHcCC
Confidence 1 11111000000000 00 0011233444443321 1122444444443455677888889999999999
Q ss_pred ceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCCh-----------hHHHHHHhcCCeEEECccc
Q 011766 250 GIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH-----------TEIGLLSRAGVKVSHCPAS 318 (478)
Q Consensus 250 ~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~-----------~~~~~~~~~~~~~~~~p~~ 318 (478)
++.+|+.+.....+.. +.. +.....+.|+....+ +++.++++.|+.+.++|..
T Consensus 204 ~v~~H~~~~~~~~~~~-------------~~~---l~~g~~~~H~~~~~~~~~~~~~~~~~~~i~~~~~~g~~v~~~~~~ 267 (417)
T 2ogj_A 204 PMMVHVGEPPALYDEV-------------LEI---LGPGDVVTHCFNGKSGSSIMEDEDLFNLAERCAGEGIRLDIGHGG 267 (417)
T ss_dssp CEEEEECSSSSCHHHH-------------HHH---CCTTCEEETTTCCCTTTCTTSCHHHHHHHHHC--CCCEEECCBCS
T ss_pred cEEEEcCCCcccHHHH-------------HHH---hcCCCEEEeccCCCccchhccCHHHHHHHHHHHhcCcEEEecCCC
Confidence 9999997643211111 111 112255677765332 5777778888888777653
Q ss_pred hhhccCCCcHHHHHHCC-CcEEEcCCCCCCC-C---CcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHH
Q 011766 319 AMRMLGFAPIKEMLHAD-ICVSLGTDGAPSN-N---RMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATING 393 (478)
Q Consensus 319 ~~~~~~~~~~~~~~~~g-v~v~~gsD~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~p 393 (478)
.. ....+++.+++.| ++++++||++ .. . ...+...+.... . .++|++++++++|.||
T Consensus 268 ~~--~~~~~~~~~~~~G~~~~~lgtD~~-~~~~~g~~~~l~~~~~~~~--~-------------~~l~~~~al~~~T~n~ 329 (417)
T 2ogj_A 268 AS--FSFKVAEAAIARGLLPFSISTDLH-GHSMNFPVWDLATTMSKLL--S-------------VDMPFENVVEAVTRNP 329 (417)
T ss_dssp SS--CCHHHHHHHHHTTCCCSBCCBCBS-TTTTTTTCCCHHHHHHHHH--H-------------TTCCHHHHHHTTTHHH
T ss_pred cc--ccchHHHHHHHcCCCceEEEcCCC-CCccCCChhHHHHHHHHHH--H-------------cCCCHHHHHHHHHHHH
Confidence 21 2346788999999 9999999986 42 1 112222222111 1 2599999999999999
Q ss_pred HHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHHHHH
Q 011766 394 AKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDK 473 (478)
Q Consensus 394 A~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~ 473 (478)
|+++|+++ +|+|++|++|||||+|.+... .+..++....++.....+|..||++|++||+++++++.+ +++++++.
T Consensus 330 A~~lgl~~-~G~l~~G~~ADlvv~d~~~~~-~~~~~~~g~~~~~~~~~~v~~t~v~G~~v~~~~~~~~~~--~~~~~~~~ 405 (417)
T 2ogj_A 330 ASVIRLDM-ENRLDVGQRADFTVFDLVDAD-LEATDSNGDVSRLKRLFEPRYAVIGAEAIAASRYIPRAR--KLVRHSHG 405 (417)
T ss_dssp HHHTTCCC-SSTTSTTSBCEEEEEEEEEEE-EEEECTTSCEEEEEEEEEEEEEEETTEEEECCCCCCCC-----------
T ss_pred HHHhCCCC-CCccCCCCcccEEEEecccCC-ceecCCCCceEecccccceEEEEECCEEEEeCCccchHH--HHHHHhhc
Confidence 99999976 899999999999999986321 122333333333333458999999999999999999877 66666543
|
| >1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-35 Score=283.49 Aligned_cols=348 Identities=16% Similarity=0.127 Sum_probs=213.1
Q ss_pred eEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCC
Q 011766 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (478)
Q Consensus 21 ~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~ 100 (478)
++|+|++|++++ ..+++++|+|+||+|++|++..+. + .+.++||++|++|+|||||+|+|+....
T Consensus 2 ~li~~~~v~~~~---~~~~~~~v~I~~g~I~~vg~~~~~----~-~~~~viD~~g~~v~PGlID~H~H~~~g~------- 66 (382)
T 1yrr_A 2 YALTQGRIFTGH---EFLDDHAVVIADGLIKSVCPVAEL----P-PEIEQRSLNGAILSPGFIDVQLNGCGGV------- 66 (382)
T ss_dssp EEEESSEEECSS---CEESSEEEEEETTEEEEEEEGGGS----C-TTCCEEECTTCEEEECEEEEEESEETTE-------
T ss_pred EEEEeeEEEcCC---ceeeCCEEEEECCEEEEEecCCCC----C-ccceeecCCCCEEccCEEEEeecccCCc-------
Confidence 579999999764 266789999999999999875321 1 2457999999999999999999985310
Q ss_pred CCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCH-H-------HHHHHHHHhCCeEEEeccccc
Q 011766 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHV-S-------EMAKAVELLGLRACLVQSTMD 172 (478)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~-~-------~~~~~~~~~g~~~~~~~~~~~ 172 (478)
++.+| ...++++.. .....+++++||||+++++.... . ...+.....|.+.. + ...
T Consensus 67 -~~~~~--------~~~~~~~~~----~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-g--~~~ 130 (382)
T 1yrr_A 67 -QFNDT--------AEAVSVETL----EIMQKANEKSGCTNYLPTLITTSDELMKQGVRVMREYLAKHPNQAL-G--LHL 130 (382)
T ss_dssp -ESSSS--------TTTSSHHHH----HHHHHHHHHTTEEEEEEEEECCCHHHHHHHHHHHHHHHHHCTTSBC-C--EEE
T ss_pred -Ccccc--------ccCCCHHHH----HHHHHHHHhCCeEEEEeecCCCCHHHHHHHHHHHHHHhhccCCcee-E--EEE
Confidence 11111 111233322 22567899999999999653321 1 11222222344421 1 111
Q ss_pred CCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEE-eccccccCCHHHHHHHHHHHHHcCCce
Q 011766 173 CGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWF-GIRQIMNATDRLLLETRDMAREFKTGI 251 (478)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~a~~~~~~v 251 (478)
.+....+............ ....+.++ +...+.+.++.+. .+. +.+.++++.+++.|+++
T Consensus 131 ~g~~~~~~~~g~~~~~~~~-----------~~~~~~~~-~~~~~~~~ik~~~~~~~-------~~~~~~~~~a~~~g~~v 191 (382)
T 1yrr_A 131 EGPWLNLVKKGTHNPNFVR-----------KPDAALVD-FLCENADVITKVTLAPE-------MVPAEVISKLANAGIVV 191 (382)
T ss_dssp ECSSCCCSCC-CCCSCSCC-----------HHHHHHHH-HHHHTTTTEEEEEECGG-------GSCHHHHHHHHHTTCEE
T ss_pred eCCcCCccccCCCCHHHcc-----------CCCHHHHH-HHHhcCCCEEEEEECCC-------CChHHHHHHHHHCCCEE
Confidence 1111111111100111111 12233344 3333445666532 111 34557889999999999
Q ss_pred eE-eccCChhhhHHHhhh--cCCCCc----------hHHHHhhhCCCCCC---eeeeeeccCChhHHHHHHhcC-CeEEE
Q 011766 252 HM-HVAEIPYENQVVMDT--RKVDHG----------TVTFLDKIEFLQNN---LLSAHTVWVNHTEIGLLSRAG-VKVSH 314 (478)
Q Consensus 252 ~~-H~~~~~~~~~~~~~~--~~~~~~----------~~~~l~~~~~~~~~---~~i~h~~~~~~~~~~~~~~~~-~~~~~ 314 (478)
++ |+.+...+....... ....|. ....+... ....+ .++.|+.+++++.++++++.+ ..+..
T Consensus 192 ~~gH~~~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~~g~~~~~-l~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ 270 (382)
T 1yrr_A 192 SAGHSNATLKEAKAGFRAGITFATHLYNAMPYITGREPGLAGAI-LDEADIYCGIIADGLHVDYANIRNAKRLKGDKLCL 270 (382)
T ss_dssp EECSCCCCHHHHHHHHHHTCCEESSTTTTSCCBCSSCCHHHHHH-HHCTTCEEEEECSSSSSCHHHHHHHHHHHGGGEEE
T ss_pred EEECCCCCHHHHHHHHHcCCCeeEECCCCCCccccCCcchhhHh-hcCCcceeeecCcccccCHHHHHHHHHcCCCcEEE
Confidence 98 998655443332221 101100 00000000 00011 268899999999999998877 45555
Q ss_pred Cccchhhcc---CC---CcHHHHHHCCCcE-EEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHH
Q 011766 315 CPASAMRML---GF---APIKEMLHADICV-SLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLR 387 (478)
Q Consensus 315 ~p~~~~~~~---~~---~~~~~~~~~gv~v-~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~ 387 (478)
++....... +. ..++.+++.|+++ +.|||.. +..+++.+|+.+... .++|++++|+
T Consensus 271 ~~d~~~~~g~~~~~~~~~~~~~~~~~Gv~~~~~Gt~~g---~~~~~~~~~~~~~~~--------------~g~~~~~al~ 333 (382)
T 1yrr_A 271 VTDATAPAGANIEQFIFAGKTIYYRNGLCVDENGTLSG---SSLTMIEGVRNLVEH--------------CGIALDEVLR 333 (382)
T ss_dssp ECCBCTTTTSCCSEEEETTEEEEECSSCEECTTCCEEE---BCCCHHHHHHHHHHH--------------HCCCHHHHHH
T ss_pred ECcChHhcCCCCceEEECCEEEEEECCEEEeCCCcCcC---CccCHHHHHHHHHHH--------------hCCCHHHHHH
Confidence 554322211 00 1145678889887 4466643 346788888876632 1599999999
Q ss_pred HHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEEC
Q 011766 388 MATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKN 456 (478)
Q Consensus 388 ~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~ 456 (478)
++|.|||+++|+++++|+|++||.|||||+|.+ .+|..||++|++|+++
T Consensus 334 ~aT~~~A~~lg~~~~~G~i~~G~~ADlvvld~~--------------------~~v~~v~~~G~~v~~~ 382 (382)
T 1yrr_A 334 MATLYPARAIGVEKRLGTLAAGKVANLTAFTPD--------------------FKITKTIVNGNEVVTQ 382 (382)
T ss_dssp HHTHHHHHHTTCTTTSSSCCTTSBCCEEEECTT--------------------SCEEEEEETTEEEEEC
T ss_pred HHHHHHHHHhCCCCCCCccCCCCCCCEEEECCC--------------------CCEEEEEECCEEEEeC
Confidence 999999999999888999999999999999997 4899999999999975
|
| >2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=298.93 Aligned_cols=383 Identities=16% Similarity=0.151 Sum_probs=221.5
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcC-ChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcc
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQ-SADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~-~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~ 96 (478)
+|+++|+|++|++++ . ..+++|+|+||+|++|++ ..... ....++++||++|++|+|||||+|+|+....
T Consensus 3 ~m~~li~~~~v~~~~---~-~~~~~v~i~~g~I~~i~~~~~~~~--~~~~~~~viD~~g~~v~PGlID~H~H~~~~~--- 73 (452)
T 2gwn_A 3 AMKILLRNALITNEG---K-TFPGSVMIDGAFISRIIEGELPAD--DNLSADEVIECSGLRLFPGCIDDQVHFREPG--- 73 (452)
T ss_dssp CSEEEEEEEEEEETT---E-EEEEEEEEETTEEEEEEESCCCTT--CCTTCSEEEECTTCEEEECEEEEEECCCTTT---
T ss_pred cccEEEECeEEECCC---c-eeeeeEEEECCEEEEEecCCCccc--cCCCCCeEEeCCCCEEecCEEeeccccCCCC---
Confidence 468899999999743 2 467899999999999986 42210 0012458999999999999999999995310
Q ss_pred ccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC-----HHH---HHHHHHHhCCeEEEec
Q 011766 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-----VSE---MAKAVELLGLRACLVQ 168 (478)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~-----~~~---~~~~~~~~g~~~~~~~ 168 (478)
..+.++. ....+.++++||||+++++... ... ..+.....+.-.+...
T Consensus 74 --------------------~~~~e~~----~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (452)
T 2gwn_A 74 --------------------LTHKATI----ASESRAAVAGGVTSFMDMPNTNPPTTMWERLLEKRQIGADTAWANYGFF 129 (452)
T ss_dssp --------------------CTTTCCH----HHHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEEC
T ss_pred --------------------CCcHHHH----HHHHHHHHhCCeEEEEcCCCCCCCCChHHHHHHHHHHhhccCcccEEEE
Confidence 0011111 1223456799999999976331 111 1122222221111100
Q ss_pred ccccCCCCCCCcccccC--CcccCC--CCCC-cccc-ccchhHHHHHHHhcCCCCCCeEEEEe-----------------
Q 011766 169 STMDCGEGLPASWAVRT--TDDCIQ--PDSS-ISFN-FVSSSQKELYAKHHHAADGRIRIWFG----------------- 225 (478)
Q Consensus 169 ~~~~~~~~~~~~~~~~~--~~~~~~--~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 225 (478)
.....+ ......... ....+. .... ..+. .......+.++.. ...+.....
T Consensus 130 ~~~~~~--~~~~i~~~~~~g~~g~k~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~h~~~~~~~~~~~~~~~~~~G 203 (452)
T 2gwn_A 130 FGGTND--NIDEIKRVDKHLVPGLKLFLGSSTGNMLVDNKETLEKIFGEC----DLLIATHCEKEEIIRANKEHYKAKYG 203 (452)
T ss_dssp EECCSS--CHHHHHTCCTTSCSCEEEESSSCCGGGBCCCHHHHHHHHHHC----CSCEEEECCCHHHHHHHHHHHHHHHC
T ss_pred EeecCC--CHHHHHHHHHcCCCEEEEEeccCCCCcccCCHHHHHHHHHHc----CCEEEEcCCCHHHHHhHHhhhhhhcC
Confidence 000000 000000000 000000 0000 0000 0011233333332 111211000
Q ss_pred ----c--c---ccccCCHHHHHHHHHHHHHcCCceeE-eccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCe---eee
Q 011766 226 ----I--R---QIMNATDRLLLETRDMAREFKTGIHM-HVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNL---LSA 292 (478)
Q Consensus 226 ----~--~---~~~~~~~~~l~~~~~~a~~~~~~v~~-H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~i~ 292 (478)
+ + .......+.+++++++|++.|+++++ |+.. ....+.+.... ..+.. .. +..
T Consensus 204 ~~~~~~~h~~~~~~~~~~~~l~~~~~la~~~g~~v~i~H~~~-~~~~~~~~~~~-----------a~~~~--~v~~~~~~ 269 (452)
T 2gwn_A 204 NDLDIHFHPLIRSEEACYRSSAEAVELAERMNARLHILHLST-EKELSLFRNDI-----------PTAQK--RITSEVCV 269 (452)
T ss_dssp SCCCGGGHHHHSCHHHHHHHHHHHHHHHHHHTCCEEECCCCC-TGGGGGSCCSS-----------CGGGC--SEEEEEEH
T ss_pred cccchhhccccCChHHHHHHHHHHHHHHHHhCCCEEEEeCCC-HHHHHHHHHhh-----------cccCC--CeEEEEch
Confidence 0 0 01112356788899999999999999 8873 22222211100 00000 12 234
Q ss_pred eeccCChhHHHHHHhcCCeEEECccchhhc-cCCCcHHHHHHCCCcEEEcCCCCCCCCC---cCHHH--------HHHHH
Q 011766 293 HTVWVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNR---MSIVD--------EMYLA 360 (478)
Q Consensus 293 h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~gv~v~~gsD~~~~~~~---~~~~~--------~~~~~ 360 (478)
|+.++++++++. .+..+.++|. ++. .+..++.+++++|+++++|||+.+.... .+++. +++..
T Consensus 270 h~~~l~~~~~~~---~g~~~~~~P~--lr~~~~~~~l~~~l~~Gv~~~lgTD~~~~~~~~k~~~~~~~~~g~~~~e~~~~ 344 (452)
T 2gwn_A 270 HHLWFSDTDYGR---LGNRIKWNPA--IKKESDREALRAAVRNGRIDIIATDHAPHLLREKEGSCLQAASGGPLVQHSLL 344 (452)
T ss_dssp HHHHCCGGGHHH---HGGGGCCSSC--CCCHHHHHHHHHHHHHSSSCEEECCBCCCCHHHHCSCTTTSCCCCCCTTTHHH
T ss_pred HHhhcCHHHHhc---cCceEEECCC--CCCHHHHHHHHHHHHCCCceEEEeCCCCCChHHhcCChhhCCCCCccHHHHHH
Confidence 888999988876 5667777887 333 3567889999999999999999765321 23332 22222
Q ss_pred HHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccC-
Q 011766 361 SLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMR- 439 (478)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~- 439 (478)
...... ...++|++++++++|.|||+++|++ ++|+|++|++|||||+|.++....+..++.+...+...
T Consensus 345 ~~~~~~---------~~~~ls~~~~l~~~T~~~A~~lgl~-~~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~ 414 (452)
T 2gwn_A 345 ALLELC---------NQGIFSIEEIVSKTAHIPATLFAIE-KRGYIRPGYYADLVLVDPSSPHTVSADNILSLCGWSPFE 414 (452)
T ss_dssp HHHHHH---------HTTSSCHHHHHHHHTHHHHHHHTBT-TCSSCCTTSBCCEEEEETTSCEECCTTTCCSTTCCCTTT
T ss_pred HHHHHH---------HcCCCCHHHHHHHHhHhHHHHcCCC-CCCcccCCCcCCEEEEcCCCCeEECHHHccccCCCCCCC
Confidence 221100 0236999999999999999999996 68999999999999999986554454555444433332
Q ss_pred ----CCCeeEEEEccEEEEECCeeecc-cHHHHH
Q 011766 440 ----TENVVSVMCNGQWVMKNKKILLL-MRGRLF 468 (478)
Q Consensus 440 ----~~~v~~v~v~G~~v~~~g~~~~~-~~~~~~ 468 (478)
..+|..||++|++|+++|+++.. ..|+++
T Consensus 415 g~~~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~~ 448 (452)
T 2gwn_A 415 GFTFSHSVAYTFVNGCLAYAKGRLAESRPTVHPL 448 (452)
T ss_dssp TCEESCEEEEEEETTEEEEETTEECSSCCCCCBC
T ss_pred CcEEeeeEEEEEECCEEEEECCeeccCCCCceee
Confidence 46799999999999999999865 456655
|
| >1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia pickettii} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=301.78 Aligned_cols=380 Identities=14% Similarity=0.151 Sum_probs=211.1
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcccc
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~ 98 (478)
++++|+|++|++++ . ..+++|+|+||+|++|++... .++++||++|++|+|||||+|+|+.+....
T Consensus 1 ~~~li~n~~v~~~~---~-~~~~~v~I~~g~I~~ig~~~~-------~~~~viD~~G~~v~PGlID~H~H~~~~~~~--- 66 (457)
T 1nfg_A 1 MDIIIKNGTIVTAD---G-ISRADLGIKDGKITQIGGALG-------PAERTIDAAGRYVFPGGIDVHTHVETVSFN--- 66 (457)
T ss_dssp CCEEEEEEEEEETT---E-EEEEEEEEETTEEEEESSCCC-------CCSEEEECTTCEEEECEEEEEECCSCEETT---
T ss_pred CcEEEEeeEEEeCC---C-ceeeeEEEECCEEEEecCCCC-------CCCeEEeCCCCEEccceEeeccccccCcCC---
Confidence 36899999999754 2 257899999999999987421 245899999999999999999999531100
Q ss_pred CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC----HHHHHHHHHHh-CCeEEEecccccC
Q 011766 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH----VSEMAKAVELL-GLRACLVQSTMDC 173 (478)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~----~~~~~~~~~~~-g~~~~~~~~~~~~ 173 (478)
.+..++.+ ...+.++++||||+++++... .....+..... .-...........
T Consensus 67 ------------------~~~~e~~~----~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (457)
T 1nfg_A 67 ------------------TQSADTFA----TATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAGGKSAIDYGYHII 124 (457)
T ss_dssp ------------------EECSCCHH----HHHHHHHHTTEEEEEEEEECCTTSCHHHHHHHHHHHHTTTCSSEEEEEEE
T ss_pred ------------------CCChhhHH----HHHHHHHhCCcEEEEeCCCCCCCCChHHHHHHHHHHhcccCccCEEEEEe
Confidence 00111211 123457899999999975321 12212211111 0000000000000
Q ss_pred CCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeE
Q 011766 174 GEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHM 253 (478)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~ 253 (478)
. +. . . .+..+.++++...+...++.+.........+.+.+.++++.+++.+.++.+
T Consensus 125 ~---~~-~---------~-----------~~~~~~~~~~~~~G~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~~ 180 (457)
T 1nfg_A 125 V---LD-P---------T-----------DSVIEELEVLPDLGITSFKVFMAYRGMNMIDDVTLLKTLDKAVKTGSLVMV 180 (457)
T ss_dssp C---SS-C---------C-----------HHHHHHTTTGGGGTCCEEEEESSSTTTTBCCHHHHHHHHHHHHHHTCEEEE
T ss_pred e---cC-C---------c-----------hhHHHHHHHHHHcCCCEEEEeeccCCCCCCCHHHHHHHHHHHHhcCCEEEE
Confidence 0 00 0 0 011122223333333444443333221234667777888889999999999
Q ss_pred eccCChhhhHHHhh--hcCCCC-------ch--------HHHHhhhCCCCCCeeeeeeccCChhHHHH---HHhcCCeE-
Q 011766 254 HVAEIPYENQVVMD--TRKVDH-------GT--------VTFLDKIEFLQNNLLSAHTVWVNHTEIGL---LSRAGVKV- 312 (478)
Q Consensus 254 H~~~~~~~~~~~~~--~~~~~~-------~~--------~~~l~~~~~~~~~~~i~h~~~~~~~~~~~---~~~~~~~~- 312 (478)
|............. ..+... .+ .+.+......+.+..+.|.. +.+.++. +++.|..+
T Consensus 181 H~e~~~~~~~~~~~~~~~g~~~~~~h~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~H~~--~~~~~~~~~~~~~~G~~v~ 258 (457)
T 1nfg_A 181 HAENGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIVNAPIYIVHVT--CEESLEEVMRAKSRGVRAL 258 (457)
T ss_dssp ECCCHHHHHHHHHHHHHTTCCSTHHHHHTSCHHHHHHHHHHHHHHHHHHTCCEEECCCC--SHHHHHHHHHHHHHTCCEE
T ss_pred eCCCHHHHHHHHHHHHhcCCcchhhccccCCHHHHHHHHHHHHHHHHHHCCCEEEEeCC--cHHHHHHHHHHHHcCCeEE
Confidence 98543221111110 011000 00 00111111112223333433 2333333 33445432
Q ss_pred -EECccch------hh----------------c-cCCCcHHHHHHCCCcEEEcCCCCCCCCC-------cCHHH------
Q 011766 313 -SHCPASA------MR----------------M-LGFAPIKEMLHADICVSLGTDGAPSNNR-------MSIVD------ 355 (478)
Q Consensus 313 -~~~p~~~------~~----------------~-~~~~~~~~~~~~gv~v~~gsD~~~~~~~-------~~~~~------ 355 (478)
.++|... .. . .+..++..+++.|+.+++|||+.+.... .+++.
T Consensus 259 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~G~~~~~gtD~~~~~~~~~k~~~~~~~~~~~~g~~ 338 (457)
T 1nfg_A 259 AETCTHYLYLTKEDLERPDFEGAKYVFTPPARAKKDHDVLWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAP 338 (457)
T ss_dssp ECEEGGGGTCCGGGGGCTTTGGGGGCCSSCCCCHHHHHHHHHHHHTTCCSCEECCBCCCCTTTTTTTTTTCGGGSCCCBC
T ss_pred EEEchHHhEeCHHHhccccccCceeEEcCCCCCHHHHHHHHHHHhCCCeEEEecCCCCCChHHhhhcccCCHhHCCCCcc
Confidence 2233210 00 0 1223467889999999999998665322 22321
Q ss_pred --HHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhh
Q 011766 356 --EMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITS 433 (478)
Q Consensus 356 --~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~ 433 (478)
+++........ ...++|++++++++|.|||++||+++++|+|++|++|||||+|.++.+..+..++.+.
T Consensus 339 g~e~~~~~~~~~~---------~~~~l~~~~~l~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~ 409 (457)
T 1nfg_A 339 GVEERLMMVYQGV---------NEGRISLTQFVELVATRPAKVFGMFPQKGTIAVGSDADIVLWDPEAEMVIEQTAMHNA 409 (457)
T ss_dssp CTTTHHHHHHHHH---------HTTSSCHHHHHHHHTHHHHHHTTCTTTSSSCSTTSBCCEEEEEEEEEEECCGGGSCSS
T ss_pred cHHHHHHHHHHHH---------HcCCCCHHHHHHHHhhhHHHHhCCCCCCcCcCCCCccCEEEEeCCCCEEecHHHccCC
Confidence 22222211100 0125999999999999999999998778999999999999999986443343343333
Q ss_pred hhhccC-----CCCeeEEEEccEEEEECCeeecccH-HHHHH
Q 011766 434 LVYCMR-----TENVVSVMCNGQWVMKNKKILLLMR-GRLFQ 469 (478)
Q Consensus 434 ~~~~~~-----~~~v~~v~v~G~~v~~~g~~~~~~~-~~~~~ 469 (478)
..+... ..+|..||++|++||++|++++... |++++
T Consensus 410 ~~~~~~~g~~~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~~~ 451 (457)
T 1nfg_A 410 MDYSSYEGHKVKGVPKTVLLRGKVIVDEGSYVGEPTDGKFLK 451 (457)
T ss_dssp CSCCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTSCCBCC
T ss_pred CCCCCccCCEecceEEEEEECCEEEEECCccccCCCCCeeeC
Confidence 322211 2479999999999999999987765 76653
|
| >2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-36 Score=299.00 Aligned_cols=383 Identities=14% Similarity=0.142 Sum_probs=218.5
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~ 96 (478)
.+++++|+|++|+++++ ..+++|+|+||||++|++..+. ..++++||++|++|+|||||+|+|+....+.
T Consensus 24 ~~~~~li~n~~v~~~~~----~~~~~V~I~~grI~~Ig~~~~~-----~~~~~vID~~G~~v~PGlID~H~H~~~~~~~- 93 (501)
T 2vm8_A 24 TSDRLLIKGGKIVNDDQ----SFYADIYMEDGLIKQIGENLIV-----PGGVKTIEAHSRMVIPGGIDVHTRFQMPDQG- 93 (501)
T ss_dssp -CCCEEEEEEEEECSSC----EEEEEEEEETTEEEEEESSCCC-----CSSSCEEECTTCEEEECEEEEEECTTCEETT-
T ss_pred CcCCEEEEeeEEECCCC----ceEeeEEEECCEEEEeccCCCC-----CCCCeEEECCCCEEeeCEEEeeecccccccC-
Confidence 34689999999997542 3568999999999999975321 1245899999999999999999999542210
Q ss_pred ccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc----CHHHHHHHHHH----hCCeEEEec
Q 011766 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ----HVSEMAKAVEL----LGLRACLVQ 168 (478)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~----~~~~~~~~~~~----~g~~~~~~~ 168 (478)
..+.++. ....++++++||||++++... ......+.... .....+ +
T Consensus 94 --------------------~~~~e~~----~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g- 147 (501)
T 2vm8_A 94 --------------------MTSADDF----FQGTKAALAGGTTMIIDHVVPEPGTSLLAAFDQWREWADSKSCCDY-S- 147 (501)
T ss_dssp --------------------EECSSCH----HHHHHHHHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHHHHCSSEE-E-
T ss_pred --------------------CCcHHHH----HHHHHHHHhCCcEEEEeCCCCCCCCChHHHHHHHHHHHhcCCeeEE-E-
Confidence 0011111 123457899999999986432 12222222111 111111 1
Q ss_pred ccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcC
Q 011766 169 STMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFK 248 (478)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 248 (478)
....... + ...... +..+++++ .+...++.+..+......+.+.+.++++.+++++
T Consensus 148 -~~~~~~~----~----~~~~~~------------e~~~l~~~---~G~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g 203 (501)
T 2vm8_A 148 -LHVDISE----W----HKGIQE------------EMEALVKD---HGVNSFLVYMAFKDRFQLTDCQIYEVLSVIRDIG 203 (501)
T ss_dssp -EEEECCS----C----SHHHHH------------HHHHHHHH---SCCCEEEEESSSTTTTBCCHHHHHHHHHHHHHHT
T ss_pred -EEEEecC----C----CcccHH------------HHHHHHHh---CCceEEEEeeccCCCCCCCHHHHHHHHHHHHHhC
Confidence 0000000 0 000011 33333332 3344566555444445678899999999999999
Q ss_pred CceeEeccCChhhhHHHhh--hcCCCC--------c------hH-HHHhhhCCCCCCeeeeeeccCC-hhHHHHHHhcCC
Q 011766 249 TGIHMHVAEIPYENQVVMD--TRKVDH--------G------TV-TFLDKIEFLQNNLLSAHTVWVN-HTEIGLLSRAGV 310 (478)
Q Consensus 249 ~~v~~H~~~~~~~~~~~~~--~~~~~~--------~------~~-~~l~~~~~~~~~~~i~h~~~~~-~~~~~~~~~~~~ 310 (478)
.++.+|+.+.......... ..+... . .+ ..+......+.+..+.|+.... .+.++.+++.|+
T Consensus 204 ~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~g~~~hi~h~~~~~~~~~i~~~~~~G~ 283 (501)
T 2vm8_A 204 AIAQVHAENGDIIAEEQQRILDLGITGPEGHVLSRPEEVEAEAVNRAITIANQTNCPLYITKVMSKSSAEVIAQARKKGT 283 (501)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTTTCCSTHHHHHHSCHHHHHHHHHHHHHHHHHHTCCEEEEEECCHHHHHHHHHHHHTTC
T ss_pred CEEEEEccChHHHHHHHHHHHhcCCCChhhccccCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCcHHHHHHHHHHHhCCC
Confidence 9999999753321111111 111100 0 00 1111111223456666665321 233445577787
Q ss_pred eEEECccchh--------------h----c----------cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCH-----H---
Q 011766 311 KVSHCPASAM--------------R----M----------LGFAPIKEMLHADICVSLGTDGAPSNNRMSI-----V--- 354 (478)
Q Consensus 311 ~~~~~p~~~~--------------~----~----------~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~-----~--- 354 (478)
.+. ++.... . . .+..++.++++.|+.+++|||+.+.....++ +
T Consensus 284 ~v~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~pp~r~~~~~~~~l~~~l~~G~~~~~gtD~~~~~~~~~~~~~~~~~~~ 362 (501)
T 2vm8_A 284 VVY-GEPITASLGTDGSHYWSKNWAKAAAFVTSPPLSPDPTTPDFLNSLLSCGDLQVTGSAHCTFNTAQKAVGKDNFTLI 362 (501)
T ss_dssp CEE-EEEBHHHHHCCGGGGGCSSHHHHHHTCCSSCCCSCTTHHHHHHHHHHHTSSCCCBCCBCCCCHHHHGGGSSCGGGS
T ss_pred cEE-EEEChhHhhcChhhhcccccccCceEEECCCCCCCcchHHHHHHHHhcCceEEEEecCCCCChhhhhcccCChhhC
Confidence 652 332110 0 0 0112344689999999999998654211000 0
Q ss_pred ------HHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcC
Q 011766 355 ------DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVH 428 (478)
Q Consensus 355 ------~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~ 428 (478)
.++++...... .....++|++++++++|.|||+++|+++++|+|++|++|||||||.++....+..
T Consensus 363 ~~G~~g~e~~l~~~~~~--------~~~~~~l~~~~~l~~~T~~~A~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~ 434 (501)
T 2vm8_A 363 PEGTNGTEERMSVIWDK--------AVVTGKMDENQFVAVTSTNAAKVFNLYPRKGRIAVGSDADLVIWDPDSVKTISAK 434 (501)
T ss_dssp CCCBCCTTTHHHHHHHH--------HTTTTSSCHHHHHHHHTHHHHHHHTCTTTSSCCCTTSBCCEEEEEEEEEEECCTT
T ss_pred CCCCccHHHHHHHHHHH--------HHHcCCCCHHHHHHHHhHhHHHHhCCCCCCCccCCCCcCCEEEEcCCCCeeeccc
Confidence 01111111110 0123469999999999999999999987899999999999999999854333322
Q ss_pred Chhhhhhhcc-----CCCCeeEEEEccEEEEECCeee-cccHHHHH
Q 011766 429 DRITSLVYCM-----RTENVVSVMCNGQWVMKNKKIL-LLMRGRLF 468 (478)
Q Consensus 429 d~~~~~~~~~-----~~~~v~~v~v~G~~v~~~g~~~-~~~~~~~~ 468 (478)
+..+...+.. ....|..||++|++|+++|+++ ....|+++
T Consensus 435 ~~~s~~~~~~~~g~~~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~l 480 (501)
T 2vm8_A 435 THNSSLEYNIFEGMECRGSPLVVISQGKIVLEDGTLHVTEGSGRYI 480 (501)
T ss_dssp TSSSSCSCCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCCCBC
T ss_pred cccccccCCCccCcEeCceEEEEEECCEEEEECCeEccCCCCCcee
Confidence 2221111100 0246899999999999999998 44445544
|
| >1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-34 Score=283.55 Aligned_cols=357 Identities=18% Similarity=0.184 Sum_probs=210.8
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~ 96 (478)
++++++|+|++|++++ .....+++|+|+||+|++|++... ..+.++||++|++|+|||||+|+|+.....
T Consensus 45 ~mm~~~i~~~~v~~~~--~~~~~~~~v~i~~g~I~~i~~~~~------~~~~~~iD~~g~~v~PGlID~H~H~~~~~~-- 114 (467)
T 1xrt_A 45 WMLKLIVKNGYVIDPS--QNLEGEFDILVENGKIKKIDKNIL------VPEAEIIDAKGLIVCPGFIDIHVHLRDPGQ-- 114 (467)
T ss_dssp -CCEEEEESCEEEEGG--GTEEEECEEEEETTEEEEEESSCC------CSSEEEEECTTSEEEECEEEEEECCCTTTC--
T ss_pred ceeeEEEEeeEEECCC--CCceecceEEEECCEEEEecCCCC------CCCCcEEeCCCCEEccCEEEEeecccCCCC--
Confidence 4567899999999754 235678899999999999987432 124579999999999999999999943110
Q ss_pred ccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC--------HHHHHHHHHHhC-CeEEEe
Q 011766 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH--------VSEMAKAVELLG-LRACLV 167 (478)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~--------~~~~~~~~~~~g-~~~~~~ 167 (478)
.| .++ .....+.++++|||++++++... .....+.....| ++.+..
T Consensus 115 --------~~-------------~~~----~~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 169 (467)
T 1xrt_A 115 --------TY-------------KED----IESGSRCAVAGGFTTIVCMPNTNPPIDNTTVVNYILQKSKSVGLCRVLPT 169 (467)
T ss_dssp --------TT-------------TCC----HHHHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEEC
T ss_pred --------Cc-------------hhh----HHHHHHHHHhCCeEEEEecCCCCCCCChHHHHHHHHHHhcccCcceEEEE
Confidence 00 011 11234557999999999976422 233444555566 554322
Q ss_pred cccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHc
Q 011766 168 QSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREF 247 (478)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 247 (478)
.. ..... ...... +..++++. +... ++.+..+..+.+.+.++++.|+++
T Consensus 170 g~-------~~~~~----~~~~~~------------~~~~l~~~----g~~~----i~~~~~~~~~~e~l~~~~~~A~~~ 218 (467)
T 1xrt_A 170 GT-------ITKGR----KGKEIA------------DFYSLKEA----GCVA----FTDDGSPVMDSSVMRKALELASQL 218 (467)
T ss_dssp BC-------SBGGG----CSSSBC------------CHHHHHHH----TCCC----BCCTTSCCCCHHHHHHHHHHHHHH
T ss_pred ee-------ecCCC----CcccHH------------HHHHHHHc----CCEE----EEcCCCCCCCHHHHHHHHHHHHhc
Confidence 11 11110 011122 34444432 1111 333444567889999999999999
Q ss_pred CCceeEeccCChhhhHHHh-h----hc---CCC--CchHH---HHhhhCCCCCCeeeeeeccCCh----hHHHHHHhcC-
Q 011766 248 KTGIHMHVAEIPYENQVVM-D----TR---KVD--HGTVT---FLDKIEFLQNNLLSAHTVWVNH----TEIGLLSRAG- 309 (478)
Q Consensus 248 ~~~v~~H~~~~~~~~~~~~-~----~~---~~~--~~~~~---~l~~~~~~~~~~~i~h~~~~~~----~~~~~~~~~~- 309 (478)
|+++.+|+.+.......+. . .+ +.. ..... .+......+. ..|+.+++. +.++++++.|
T Consensus 219 g~~v~~H~~~~~~~~~~l~~g~~~~~~g~~~~~~~~e~~~~~~~~~~~~~~g~---~~hi~H~~~~~~~~~i~~~~~~G~ 295 (467)
T 1xrt_A 219 GVPIMDHCEDDKLAYGVINEGEVSALLGLSSRAPEAEEIQIARDGILAQRTGG---HVHIQHVSTKLSLEIIEFFKEKGV 295 (467)
T ss_dssp TCEEEECCCGGGGTC--------------------CHHHHHHHHHHHHHHHCC---EEEESCCCSHHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCHHHHHHHHhcCccchhcccccCChHHHHHHHHHHHHHHHHhCC---CEEEEeCCCHHHHHHHHHHHhcCC
Confidence 9999999987543211110 0 00 000 00000 0111111122 345555543 3445555788
Q ss_pred -CeEEECccchhh-------------c-------cCCCcHHHHHHCCCcEEEcCCCCCCCCCc-CHHHHH---------H
Q 011766 310 -VKVSHCPASAMR-------------M-------LGFAPIKEMLHADICVSLGTDGAPSNNRM-SIVDEM---------Y 358 (478)
Q Consensus 310 -~~~~~~p~~~~~-------------~-------~~~~~~~~~~~~gv~v~~gsD~~~~~~~~-~~~~~~---------~ 358 (478)
+.+.+||..... . ....+++.+++.|+++++|||+.+..... ++|.++ .
T Consensus 296 ~v~~~~~p~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~Gv~~~lgTD~~~~~~~~~~~~~~~~~g~~g~e~~ 375 (467)
T 1xrt_A 296 KITCEVNPNHLLFTEREVLNSGANARVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEKELVEFAMPGIIGLQTA 375 (467)
T ss_dssp CEEEEECGGGGC----------------------CCHHHHHHHHHHTCSCEECCCBCCCCC-----------CCCCGGGH
T ss_pred cEEEeccHHHHhcCHhHhhccCceEEEcCCCCCHHHHHHHHHHHhCCceEEEeeCCCCCChhHhcccccCCCCCccHHHH
Confidence 557788864211 0 11234577889999999999987653321 112211 1
Q ss_pred HHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCc--------CCh
Q 011766 359 LASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPV--------HDR 430 (478)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~--------~d~ 430 (478)
...... .. ....+|++++++++|.|||+++|++ +|+|++|++|||||+|.++....+. .+|
T Consensus 376 l~~~l~-~~--------~~g~ls~~~al~~aT~n~A~~lgl~--~G~I~~G~~ADlvvld~~~~~~i~~~~~~~~~~~~p 444 (467)
T 1xrt_A 376 LPSALE-LY--------RKGIISLKKLIEMFTINPARIIGVD--LGTLKLGSPADITIFDPNKEWILNEETNLSKSRNTP 444 (467)
T ss_dssp HHHHHH-HH--------HTTSSCHHHHHHHHTHHHHHHHTCS--CSCCCTTSBCCEEEEEEEEEEECSTTTCCSSCCCCT
T ss_pred HHHHHH-HH--------HcCCCCHHHHHHHhccCHHHHhCCC--cccccCCCCCCEEEEeCCCCEEEChHHccCcCCCCC
Confidence 111110 00 0123999999999999999999995 7999999999999999885322221 233
Q ss_pred hhhhhhccCCCCeeEEEEccEEEEEC
Q 011766 431 ITSLVYCMRTENVVSVMCNGQWVMKN 456 (478)
Q Consensus 431 ~~~~~~~~~~~~v~~v~v~G~~v~~~ 456 (478)
+..+.. ..+|..||++|++||+|
T Consensus 445 ~~g~~~---~~~V~~viv~G~~v~~~ 467 (467)
T 1xrt_A 445 LWGKVL---KGKVIYTIKDGKMVYKD 467 (467)
T ss_dssp TTTCEE---EEEEEEEEETTEEEEEC
T ss_pred ccCCEE---eEEEEEEEECCEEEecC
Confidence 332211 35799999999999985
|
| >3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain, hydrolase, metal-binding, purine metabolism, zinc; HET: KCX; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=284.93 Aligned_cols=379 Identities=14% Similarity=0.166 Sum_probs=216.5
Q ss_pred CCCccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhh
Q 011766 14 SLGSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQL 93 (478)
Q Consensus 14 ~~~~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~ 93 (478)
....+++++|+|++|+++++ ..+++|+|+||+|++|++..+ ...++||++|++|+|||||+|+|+....
T Consensus 18 ~g~m~~~~~i~~~~v~~~~~----~~~~~v~i~~g~I~~i~~~~~-------~~~~~id~~g~~v~PG~iD~H~H~~~~g 86 (473)
T 3e74_A 18 QGHMSFDLIIKNGTVILENE----ARVVDIAVKGGKIAAIGQDLG-------DAKEVMDASGLVVSPGMVDAHTHISEPG 86 (473)
T ss_dssp ----CEEEEEESCEEECSSC----EEECEEEEETTEEEEEESCCC-------CEEEEEECTTCEEEECEEEEEECC----
T ss_pred hccCcCCEEEEeeEEECCCC----ceeeeEEEECCEEEEEcCCCC-------CCCcEEECCCCEEecCEEEEecccCCCC
Confidence 33455789999999997643 457899999999999998543 1258999999999999999999984321
Q ss_pred hccccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCC-ccC-----HHHHHHHHHHhCCeEEEe
Q 011766 94 AKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG-GQH-----VSEMAKAVELLGLRACLV 167 (478)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~-~~~-----~~~~~~~~~~~g~~~~~~ 167 (478)
. .. ........+.++++|||++++++ ... ............-.....
T Consensus 87 ~------------------------~~---~~~~~~~~~~~~~~G~Tt~~~~~~~t~p~~~~~~~~~~~~~~a~~~~~~d 139 (473)
T 3e74_A 87 R------------------------SH---WEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTID 139 (473)
T ss_dssp --------------------------------CHHHHHHHHHHTTEEEEEECCSSSSSCSCSHHHHHHHHHHHTTTCSSE
T ss_pred C------------------------Cc---HHHHHHHHHHHHhCCEEEEEcCcccCCCCcccHHHHHHHHHHhccCCeEE
Confidence 0 00 01112244567999999999987 322 222222222211111111
Q ss_pred cccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEec-------cccccCCHHHHHHH
Q 011766 168 QSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGI-------RQIMNATDRLLLET 240 (478)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~ 240 (478)
...... .+..... +..++.+. +...++.+... +..+..+++.+.++
T Consensus 140 ~~~~~~-----------~~~~~~~------------~l~~l~~~----G~~~~K~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (473)
T 3e74_A 140 AAQLGG-----------LVSYNID------------RLHELDEV----GVVGFKCFVATCGDRGIDNDFRDVNDWQFFKG 192 (473)
T ss_dssp EEECEE-----------CCTTCTT------------THHHHHHH----TCSCEEEEC------------CCCCHHHHHHH
T ss_pred EEEEee-----------cccchHH------------HHHHHHHc----CCCEEEEeccccCCcccccccCCCCHHHHHHH
Confidence 000000 0011122 44444433 33445544432 34556788999999
Q ss_pred HHHHHHcCCceeEeccCChhhhHH---Hhh---------hcCCCC----chH-HHHhhhCCCCCCeeeeeeccCC-hhHH
Q 011766 241 RDMAREFKTGIHMHVAEIPYENQV---VMD---------TRKVDH----GTV-TFLDKIEFLQNNLLSAHTVWVN-HTEI 302 (478)
Q Consensus 241 ~~~a~~~~~~v~~H~~~~~~~~~~---~~~---------~~~~~~----~~~-~~l~~~~~~~~~~~i~h~~~~~-~~~~ 302 (478)
++.+++.|.++.+|+.+....... ... ...... ..+ ..+......+.+..+.|..... -+.+
T Consensus 193 ~~~a~~~g~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~av~~~l~la~~~g~~lhi~Hvst~~~l~li 272 (473)
T 3e74_A 193 AQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVCHVSSPEGVEEV 272 (473)
T ss_dssp HHHHHHHTCCEEEECSCHHHHHHHHHHHHHHTCCSHHHHHHTSCHHHHHHHHHHHHHHHHHHTCCEEECSCCSHHHHHHH
T ss_pred HHHHHhcCCeEEEEecCHHHHHHHhhHHHhcCCcChhhcccCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHH
Confidence 999999999999998864221110 000 000000 001 1122222223445455544211 1345
Q ss_pred HHHHhcCC--eEEECccchhh-----------ccCCC---------cHHHHHHCCCcEEEcCCCCCCCCCcC---HH---
Q 011766 303 GLLSRAGV--KVSHCPASAMR-----------MLGFA---------PIKEMLHADICVSLGTDGAPSNNRMS---IV--- 354 (478)
Q Consensus 303 ~~~~~~~~--~~~~~p~~~~~-----------~~~~~---------~~~~~~~~gv~v~~gsD~~~~~~~~~---~~--- 354 (478)
+.+++.|. .+.+||..... ..-.+ .+.++++.|+.++++||+.+...... ++
T Consensus 273 ~~ak~~G~~vt~e~~ph~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~L~~~l~~G~~~~i~tDh~p~~~~~k~~~f~~~~ 352 (473)
T 3e74_A 273 TRARQEGQDITCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMKAW 352 (473)
T ss_dssp HHHHHTTCCEEEEECTHHHHCCHHHHHHHCGGGCCSSCCCCHHHHHHHHHHHHTTCCCEECCCBCCCCTTTTCSCTTTSC
T ss_pred HHHHHcCCCeEEEEchHhhhcCHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHhCCCCcEEEeCCCCCCHHHcccChhhcC
Confidence 55666664 45677754321 01122 34466789999999999977642210 00
Q ss_pred -----HHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcC-
Q 011766 355 -----DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVH- 428 (478)
Q Consensus 355 -----~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~- 428 (478)
-+.....+.... ....++|++++++++|.|||+++|++ ++|+|++|++|||||+|.+..+..+.+
T Consensus 353 ~G~~g~e~~l~~~~~~~--------~~~~~~~~~~~~~~~t~~~a~~~g~~-~~G~l~~G~~AD~vv~d~~~~~~~~~~~ 423 (473)
T 3e74_A 353 GGIAGLQSCMDVMFDEA--------VQKRGMSLPMFGKLMATNAADIFGLQ-QKGRIAPGKDADFVFIQPNSSYVLTNDD 423 (473)
T ss_dssp CCBCCGGGHHHHHHHHH--------TTTTCCCHHHHHHHHTHHHHHHTTCT-TSSCCSTTSBCCEEEEESSCCEECCGGG
T ss_pred CCcccHHhHHHHHHHHH--------HHcCCCCHHHHHHHHhHHHHHHhCCC-CCCccCCCCccCEEEEeCCCCEEECHHH
Confidence 011111111100 12346999999999999999999996 479999999999999998743222211
Q ss_pred -------ChhhhhhhccCCCCeeEEEEccEEEEE-CCeeecccHHHHHH
Q 011766 429 -------DRITSLVYCMRTENVVSVMCNGQWVMK-NKKILLLMRGRLFQ 469 (478)
Q Consensus 429 -------d~~~~~~~~~~~~~v~~v~v~G~~v~~-~g~~~~~~~~~~~~ 469 (478)
+|+... ....+|..||++|++||+ +|++++...|++++
T Consensus 424 ~~~~~~~sp~~g~---~~~g~v~~t~v~G~~v~~~~g~~~~~~~G~~~~ 469 (473)
T 3e74_A 424 LEYRHKVSPYVGR---TIGARITKTILRGDVIYDIEQGFPVAPKGQFIL 469 (473)
T ss_dssp CCSSSCCCTTTTC---EESCEEEEEEETTEEEEETTTBCCSCCCCCEEC
T ss_pred ccccCCCCCCCCC---EEeeEEEEEEECCEEEEecCCeEccCCCceeec
Confidence 122211 113579999999999999 99998776676653
|
| >1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB: 1e9z_B* 3qga_C* 3qgk_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=279.31 Aligned_cols=329 Identities=16% Similarity=0.145 Sum_probs=207.0
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhh-------hhhccCCCeEEeCCCCEEeeccccccccc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADIL-------QQFSQMADQIIDLQSQILLPGFVNTHVHT 89 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~-------~~~~~~~~~viD~~G~~v~PGfID~H~H~ 89 (478)
..++++|+|++|+++. . +.+++|+|+||||++||+..... ......++++||++|++|+|||||+|+|+
T Consensus 64 ~~~dllI~n~~Vid~~---g-i~~~dI~I~dGrI~~IG~~~~~~~~~~~~~~~~~~~~~evIDa~G~iV~PGlID~HvHl 139 (569)
T 1e9y_B 64 EELDLIITNALIVDYT---G-IYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHF 139 (569)
T ss_dssp TCCSEEEEEEEEEETT---E-EEEEEEEEETTEEEEEECCBCTTTSSSCCGGGBCCTTCEEEECTTCEEEECEEEEEEET
T ss_pred ccCCEEEEeeEEECCC---C-cEeeeEEEECCEEEEeecCCCccccccccccccCCCCCeEEECCCCEEecCEEEEeecC
Confidence 3578999999999742 2 46789999999999999753210 00012356899999999999999999998
Q ss_pred chhhhccccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC------------H---HHHH
Q 011766 90 SQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH------------V---SEMA 154 (478)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~------------~---~~~~ 154 (478)
.. +. ...+++++||||+++++... . ....
T Consensus 140 ~~----------------------------p~--------~~~~al~~GvTTv~d~g~~p~~~t~~~~~~~g~~~l~~~~ 183 (569)
T 1e9y_B 140 IS----------------------------PQ--------QIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWML 183 (569)
T ss_dssp TC----------------------------TT--------HHHHHHHTTEEEEEEECCSSCHHHHHCCCCCHHHHHHHHH
T ss_pred CC----------------------------cH--------HHHHHHhCCeeEEEcCCcCCCCCCcCcccCCcHHHHHHHH
Confidence 21 00 03568999999999975311 1 1122
Q ss_pred HHHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCH
Q 011766 155 KAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATD 234 (478)
Q Consensus 155 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (478)
+.....+++..... .+. ..... ...+.++ .+... +.++..+..++
T Consensus 184 ~a~~~~~~~~~~~g------~g~---------~~~~~------------~l~e~~~----~Ga~g----ik~~~~~~~t~ 228 (569)
T 1e9y_B 184 RAAEEYSMNLGFLA------KGN---------ASNDA------------SLADQIE----AGAIG----FKIHEDWGTTP 228 (569)
T ss_dssp HHHTTSSSEEEEEE------ECC---------CSCHH------------HHHHHHH----TTCSE----EEECGGGCCCH
T ss_pred HHhcccCceEEEEC------CCC---------cCCHH------------HHHHHHH----cCCCE----EEecCCCCCCH
Confidence 33333344432110 000 00001 2333332 22222 33444556789
Q ss_pred HHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCC----hhHHHHHHhcCC
Q 011766 235 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN----HTEIGLLSRAGV 310 (478)
Q Consensus 235 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~----~~~~~~~~~~~~ 310 (478)
+.+.++++.|+++|+++++|+.+...... ....+... .+.+..+.|..... ++.++++++.++
T Consensus 229 e~l~~~l~~A~~~g~~V~iHa~~~~e~g~-----------~~~~la~~--~g~~~hi~H~~~~~~~~~~d~I~~~~~~gv 295 (569)
T 1e9y_B 229 SAINHALDVADKYDVQVAIHTDTLNEAGC-----------VEDTMAAI--AGRTMHTFHTEGAGGGHAPDIIKVAGEHNI 295 (569)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCTTCSSCC-----------HHHHHHHH--TTCCEEETTTTSTTSCSTTTGGGGGGSTTE
T ss_pred HHHHHHHHHHHHhCCEEEEEcCCcccchH-----------HHHHHHHH--cCCCEEEEEcccCcccccHHHHHHHHHcCC
Confidence 99999999999999999999975221100 11112111 23445566666554 678899988887
Q ss_pred eEEECccch-----------------hhcc-----------------CCCcHHHHHHCCCcEEEcCCCCCCCCC----cC
Q 011766 311 KVSHCPASA-----------------MRML-----------------GFAPIKEMLHADICVSLGTDGAPSNNR----MS 352 (478)
Q Consensus 311 ~~~~~p~~~-----------------~~~~-----------------~~~~~~~~~~~gv~v~~gsD~~~~~~~----~~ 352 (478)
..+.++... .... ...+++.+.+.|+.+++|||+++.... .+
T Consensus 296 ~~~~~~ptl~~t~~~~~~~~d~~~v~h~l~~~~~ed~~~~~~rlr~~~~a~~~~L~d~Gv~v~iGSD~~~~~~~g~~~~~ 375 (569)
T 1e9y_B 296 LPASTNPTIPFTVNTEAEHMDMLMVCHHKDKSIKEDVQFADSRIRPQTIAAEDTLHDMGAFSITSSDSQAMGRVGEVITR 375 (569)
T ss_dssp EEEECGGGCSCBTTHHHHHHHHHHHTTTCCSSCHHHHHHHHHHCCHHHHHHHHHHHHTTSCCEECCCTTSSCCTTSHHHH
T ss_pred eeEeeCCccccccchhhhhhchhhhhhhcCcccHHHHHHhhcchhhhHHHHHHHHHhCCCEEEEeCCCCccCcccccccc
Confidence 444432211 0000 112234566789999999999765321 12
Q ss_pred HHH---HHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCC
Q 011766 353 IVD---EMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHD 429 (478)
Q Consensus 353 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d 429 (478)
+|. .+.. ..+ ........+.+++++++++++|.|||+++|+++++|+|++||.|||||||.+++
T Consensus 376 ~~~~~~~~~~----~~G--~l~~~~~~~~~ls~~~al~~~T~npA~~lGl~~~~GsIe~Gk~ADlvv~d~~~~------- 442 (569)
T 1e9y_B 376 TWQTADKNKK----EFG--RLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFF------- 442 (569)
T ss_dssp HHHHHHHHHH----HHC--SCSSCCSSSCHHHHHHHHGGGTHHHHHHTTCTTTSSSSCTTSBCCEEEECTTTT-------
T ss_pred hhhHHHHhHh----hcc--CcchhhccccCCCHHHHHHHHhHHHHHHcCCCCCccCcCCCCCCCEEEECchhc-------
Confidence 232 2211 000 110001134579999999999999999999988899999999999999999843
Q ss_pred hhhhhhhccCCCCeeEEEEccEEEEEC
Q 011766 430 RITSLVYCMRTENVVSVMCNGQWVMKN 456 (478)
Q Consensus 430 ~~~~~~~~~~~~~v~~v~v~G~~v~~~ 456 (478)
..++..||++|++++.+
T Consensus 443 ----------~~~v~~v~~~G~iv~~~ 459 (569)
T 1e9y_B 443 ----------GVKPNMIIKGGFIALSQ 459 (569)
T ss_dssp ----------TTCCSEEEETTEEEEEE
T ss_pred ----------CCCccEEEECCEEEEcC
Confidence 25899999999999976
|
| >2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=278.42 Aligned_cols=347 Identities=15% Similarity=0.104 Sum_probs=209.4
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCC-CEEeecccccccccchhhhcc
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQS-QILLPGFVNTHVHTSQQLAKG 96 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G-~~v~PGfID~H~H~~~~~~~~ 96 (478)
+++++|+|++|+++ . +++|+|+||||++|++... ..+.++||++| ++|+|||||+|+|+.....
T Consensus 4 ~~~~~i~~~~v~~~--~-----~~~v~i~~g~I~~ig~~~~------~~~~~~iD~~g~~~v~PG~ID~H~H~~~~~~-- 68 (379)
T 2ics_A 4 DYDLLIKNGQTVNG--M-----PVEIAIKEKKIAAVAATIS------GSAKETIHLEPGTYVSAGWIDDHVHCFEKMA-- 68 (379)
T ss_dssp CEEEEEEEEECTTS--C-----EEEEEEETTEEEEEESCCC------CCEEEEEECCTTCEEEECEEEEEECCCTTSS--
T ss_pred cccEEEECCEEEcC--C-----cceEEEECCEEEEecCCCC------CCCCcEEeCCCCEEEccCEEEeccccCccCc--
Confidence 46889999999963 2 4699999999999987431 12457999999 9999999999999954210
Q ss_pred ccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCc---cCHHHHHHHHHHhCCe--EEEecccc
Q 011766 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGG---QHVSEMAKAVELLGLR--ACLVQSTM 171 (478)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~---~~~~~~~~~~~~~g~~--~~~~~~~~ 171 (478)
.. .. ...++++++||||+++++. .......+..+..+.+ .++....
T Consensus 69 ------------------~~-~~---------~~~~~~~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 119 (379)
T 2ics_A 69 ------------------LY-YD---------YPDEIGVKKGVTTVIDAGTTGAENIHEFYDLAQQAKTNVFGLVNISK- 119 (379)
T ss_dssp ------------------SS-CC---------CHHHHTGGGTEEEEEEESSSCTTTHHHHHHHHHTSSSEEEEEEESST-
T ss_pred ------------------cc-cC---------chhhhHhhCceeEEEcCCCCCccCHHHHHHHHHhhcccEEEEccccc-
Confidence 00 00 0113578999999998653 2234455555555532 2222111
Q ss_pred cCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHH-cCCc
Q 011766 172 DCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMARE-FKTG 250 (478)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~~~~ 250 (478)
.+..+. .. ..... .......++.++++. .+...++..........++.+.+.++++++++ .|++
T Consensus 120 ---~G~~~~--~~-~~~~~--------~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~ 184 (379)
T 2ics_A 120 ---WGIVAQ--DE-LADLS--------KVQASLVKKAIQELP-DFVVGIKARMSRTVIGDNGITPLELAKQIQQENQEIP 184 (379)
T ss_dssp ---TTTSSS--CT-TSSGG--------GCCHHHHHHHHHHCT-TTEEEEEEEESHHHHTTCTTHHHHHHHHHHHTTTTCC
T ss_pred ---cCCCCH--HH-HHHHH--------HHHHHHHHHHHHhhh-CcceEEEEeccccccccchHHHHHHHHHHHHHhcCCe
Confidence 111110 00 00000 001123444444321 11122333333333344677888899999999 9999
Q ss_pred eeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccC---------Ch---hHHHHHHhcCCeEEECccc
Q 011766 251 IHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV---------NH---TEIGLLSRAGVKVSHCPAS 318 (478)
Q Consensus 251 v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~---------~~---~~~~~~~~~~~~~~~~p~~ 318 (478)
+.+|+.+.....+...... .. + ..+.|+... ++ +++.++++.|+.+.++|..
T Consensus 185 v~~H~~~~~~~~~~~~~~~----------~~-g-----~~~~H~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~p~~ 248 (379)
T 2ics_A 185 LMVHIGSAPPHLDEILALM----------EK-G-----DVLTHCFNGKENGILDQATDKIKDFAWQAYNKGVVFDIGHGT 248 (379)
T ss_dssp EEEEECSSSSCHHHHHHHC----------CT-T-----CEEESTTCCSTTSSEETTTTEECHHHHHHHHTTCEEECCCTT
T ss_pred EEEeCCCCcchHHHHHHHh----------hc-C-----CeeeeccCCCccchhhccCHHHHHHHHHHHHcCCEEEecCCC
Confidence 9999976432222111111 00 1 133444332 22 7888888999999998864
Q ss_pred hhhccCCCcHHHHHHCC-CcEEEcCCCCCC----CCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHH
Q 011766 319 AMRMLGFAPIKEMLHAD-ICVSLGTDGAPS----NNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATING 393 (478)
Q Consensus 319 ~~~~~~~~~~~~~~~~g-v~v~~gsD~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~p 393 (478)
+.. +..+++++++.| +.++++||+.+. .....+...+.... . .++|++++++++|.||
T Consensus 249 ~~~--~~~~~~~~~~~G~~~~~l~TD~~~~~~~~~~~~~~~~~l~~~~--~-------------~~ls~~~~~~~~T~n~ 311 (379)
T 2ics_A 249 DSF--NFHVAETALREGMKAASISTDIYIRNRENGPVYDLATTMEKLR--V-------------VGYDWPEIIEKVTKAP 311 (379)
T ss_dssp TSC--CHHHHHHHHHTTCCCSBCCCCBCHHHHHSSSCCCHHHHHHHHH--H-------------HTCCHHHHHHTTTHHH
T ss_pred CCc--CHHHHHHHHHcCCCcceEeccCcccCCCCCcHhHHHHHHHHHH--H-------------cCCCHHHHHHHHHHHH
Confidence 422 345688899999 889999997521 01122333232211 1 1599999999999999
Q ss_pred HHHcCCCCCccccccCccccEEEEcCCCCCCCCcCCh-hhhhhhccCCCCeeEEEEccEEEEECCee
Q 011766 394 AKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDR-ITSLVYCMRTENVVSVMCNGQWVMKNKKI 459 (478)
Q Consensus 394 A~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~-~~~~~~~~~~~~v~~v~v~G~~v~~~g~~ 459 (478)
|++||+++ +|+|++|++|||||+|.+..+.. ..+ ....++.....+|..||++|++||++|.+
T Consensus 312 A~~lgl~~-~G~l~~G~~ADlvv~d~~~~~~~--~~~~~g~~~~~~~~~~v~~t~v~G~~v~~~~~~ 375 (379)
T 2ics_A 312 AENFHLTQ-KGTLEIGKDADLTIFTIQAEEKT--LTDSNGLTRVAKEQIRPIKTIIGGQIYDNEGHH 375 (379)
T ss_dssp HHHTTCTT-SSSCCTTSBCCEEEEEEEEEEEE--EECTTSCEEEEEEEEEEEEEEETTEEEEC----
T ss_pred HHHhCCCC-CcCCCCCCccCEEEEecccccce--eecCCCCEEEeeeeeeeEEEEECCEEEecCCcc
Confidence 99999976 89999999999999997532211 111 11122221223899999999999999865
|
| >2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=274.41 Aligned_cols=355 Identities=18% Similarity=0.174 Sum_probs=216.6
Q ss_pred eEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCC
Q 011766 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (478)
Q Consensus 21 ~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~ 100 (478)
++|+|++|++++ ....+++|+|+||+|++|++. .+.++||++|++|+|||||+|+|+.....
T Consensus 2 ~~i~~~~v~~~~---~~~~~~~v~i~~g~I~~i~~~---------~~~~~id~~g~~v~PG~iD~H~H~~~~~~------ 63 (426)
T 2z00_A 2 ILIRNVRLVDAR---GERGPADVLIGEGRILSLEGG---------EAKQVVDGTGCFLAPGFLDLHAHLREPGE------ 63 (426)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEETTEEEESBCC---------CCSEEEECTTCEEEECEEEEEECCCTTTC------
T ss_pred EEEEeeEEECCC---CceecceEEEECCEEEEEecC---------CCceEEeCCCCEEecCEEEeccccCCCCC------
Confidence 589999999743 356788999999999999864 14579999999999999999999954210
Q ss_pred CCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC--------HHHHHHHHHHhC-CeEEEecccc
Q 011766 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH--------VSEMAKAVELLG-LRACLVQSTM 171 (478)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~--------~~~~~~~~~~~g-~~~~~~~~~~ 171 (478)
.| .++ .....+.++++|||++++++... .....+..+..+ ++.+... .
T Consensus 64 ----~~-------------~~~----~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 120 (426)
T 2z00_A 64 ----EV-------------KED----LFSGLLAAVRGGYTDLVSMPNTKPPVDTPEAVRALKEKAKALGLARLHPAA-A- 120 (426)
T ss_dssp ----TT-------------TCC----HHHHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHTSSEECCEE-C-
T ss_pred ----Cc-------------hHH----HHHHHHHHHhCCccEEEecCCCCCCcChHHHHHHHHHHhcccCcccEEEEE-E-
Confidence 00 011 11234568999999999976421 233444555556 5542211 1
Q ss_pred cCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCce
Q 011766 172 DCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGI 251 (478)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v 251 (478)
..+.. ...... +..++++. +.. .++.+..+..+++.+.++++.|+++|+++
T Consensus 121 -----~~~~~----~~~~~~------------~~~~l~~~------g~~--~i~~~~~~~~~~~~l~~~~~~a~~~g~~v 171 (426)
T 2z00_A 121 -----LTEKQ----EGKTLT------------PAGLLREA------GAV--LLTDDGRTNEDAGVLAAGLLMAAPLGLPV 171 (426)
T ss_dssp -----SBGGG----CSSSBC------------CHHHHHHH------TCC--EEECTTSCCCCHHHHHHHHHHHGGGTCCE
T ss_pred -----eecCC----ChhhHH------------HHHHHHHc------CCE--EEECCCcCCCCHHHHHHHHHHHHhhCCEE
Confidence 11100 111122 34444432 111 14445556778999999999999999999
Q ss_pred eEeccCChhhhHHHh---------hhcCCCC--c---hHHHHhhhCC------CCCCeeeeeeccCC-hhHHHHHHhcCC
Q 011766 252 HMHVAEIPYENQVVM---------DTRKVDH--G---TVTFLDKIEF------LQNNLLSAHTVWVN-HTEIGLLSRAGV 310 (478)
Q Consensus 252 ~~H~~~~~~~~~~~~---------~~~~~~~--~---~~~~l~~~~~------~~~~~~i~h~~~~~-~~~~~~~~~~~~ 310 (478)
.+|+.+......... ...+... . ....+..... .+.+..+.|+.... .+.++++++.|+
T Consensus 172 ~~H~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~e~~~~~~~~~~a~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~ 251 (426)
T 2z00_A 172 AVHAEDAGLRRNGVMNDGPLADLLGLPGNPPEAEAARIARDLEVLRYALRRSPATPRLHVQHLSTKRGLELVREAKRAGL 251 (426)
T ss_dssp EECCCCHHHHTTCSEECSHHHHHHTCCEECHHHHHHHHHHHHHHHHHHHHHCSSCCCEEETTCCCHHHHHHHHHHHHTTC
T ss_pred EEeCCCHHHHhhhhhccCccchhcccccCChHHHHHHHHHHHHHHhhccccccCCCcEEEEeCCCHHHHHHHHHHHHcCC
Confidence 999987543221000 0000000 0 0011112222 45677888987543 356777787876
Q ss_pred e--EEECccchhhc-----------cCCCcH---------HHHHHCCCcEEEcCCCCCCCCCc--CHH---------HHH
Q 011766 311 K--VSHCPASAMRM-----------LGFAPI---------KEMLHADICVSLGTDGAPSNNRM--SIV---------DEM 357 (478)
Q Consensus 311 ~--~~~~p~~~~~~-----------~~~~~~---------~~~~~~gv~v~~gsD~~~~~~~~--~~~---------~~~ 357 (478)
. +.+||.+.... ...+|+ .++++.|+.++++||+.+..... +++ .+.
T Consensus 252 ~v~~~~~p~~~~~~~~~~~~~~~~~~~~~plr~~~~~~~l~~~l~~G~~~~lgsD~~p~~~~~~~~~~~~~~~g~~~~~~ 331 (426)
T 2z00_A 252 PVTAEATPHHLTLTEEALRTFDPLFKVAPPLRGEEDREALLEGLLDGTLDAIATDHAPHTLAEKEKDLLRAPFGIPSLEV 331 (426)
T ss_dssp CEEEEECHHHHHCCGGGGGGCCGGGCCSSCCCCHHHHHHHHHHHHHTSSCEECCCBCCCCTTGGGSCTTTSCCCBCCTTT
T ss_pred CEEEEEchHHhEeCHhHhhccCceEEEeCCCCCHHHHHHHHHHHhCCCcEEEecCCCCCCHHHccCChhhCCCCcccHHH
Confidence 5 45688754321 123333 35566999999999985442210 000 001
Q ss_pred HHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCc-------CCh
Q 011766 358 YLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPV-------HDR 430 (478)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~-------~d~ 430 (478)
......... ...+++|++++++++|.|||+++|++ +|+|++|++|||||+|.+++...+. .+|
T Consensus 332 ~~~~~~~~~--------~~~~~ls~~~~l~~~T~n~A~~lgl~--~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~p 401 (426)
T 2z00_A 332 AFPLLYTEL--------HLKRGFPLQRLVELFTDGPRRVLGLP--PLHLEEGAEASLVLLSPKERPVDPSAFASKARYSP 401 (426)
T ss_dssp HHHHHHHHT--------HHHHCCCHHHHHHHHTHHHHHHHTCC--CCCSSTTSBCCEEEEECCCEECCGGGCSSSCCCCT
T ss_pred HHHHHHHHH--------HHcCCCCHHHHHHHHhhhHHHHhCCC--cccccCCCCCCEEEEeCCcEEEcHHHccccCCCCC
Confidence 111111100 01124999999999999999999994 8999999999999999965433221 123
Q ss_pred hhhhhhccCCCCeeEEEEccEEEEECCe
Q 011766 431 ITSLVYCMRTENVVSVMCNGQWVMKNKK 458 (478)
Q Consensus 431 ~~~~~~~~~~~~v~~v~v~G~~v~~~g~ 458 (478)
+..... ..+|.+||++|++||++++
T Consensus 402 ~~g~~~---~~~v~~t~v~G~~v~~~~~ 426 (426)
T 2z00_A 402 WAGWVL---GGWPVLTLVAGRIVHEALK 426 (426)
T ss_dssp TTTCEE---CCEEEEEEETTEEEEECCC
T ss_pred cCCCEE---EEEEEEEEECCEEEEecCC
Confidence 332211 3689999999999999875
|
| >3mtw_A L-arginine carboxypeptidase CC2672; hydrolase; HET: KCX M3R; 1.70A {Caulobacter vibrioides} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=274.70 Aligned_cols=381 Identities=15% Similarity=0.120 Sum_probs=200.3
Q ss_pred eeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccC
Q 011766 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIAD 99 (478)
Q Consensus 20 ~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~ 99 (478)
-.+|+|++|+|+.. ++++++++|+|+||||++||+..+. .+.++++||++|++|+|||||+|+|+......+...
T Consensus 3 ~~aI~narviD~~~-g~~i~~~~V~I~dG~I~~Ig~~~~~----~~~~~~vID~~G~~v~PG~ID~H~H~~~~~~~~~~~ 77 (403)
T 3mtw_A 3 IKAVSAARLLDVAS-GKYVDNPLVIVTDGRITSIGKKGDA----VPAGATAVDLPGVTLLPGLIDMHVHLDSLAEVGGYN 77 (403)
T ss_dssp EEEEEEEEEEETTT-TEEEESEEEEEETTEEEEEEETTCC----CCTTCEEEEEEEEEEEECEEEEEECTTCCTTCCGGG
T ss_pred cEEEEceEEEECCC-CcEecCcEEEEECCEEEEEeCCCCC----CCCCCEEEECCCCEEEeChheeeeCCccccccCccc
Confidence 35799999997643 4678999999999999999986542 124679999999999999999999986533221111
Q ss_pred CCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCHHHHHHHHHH-h-C---CeEEEecccccCC
Q 011766 100 DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVEL-L-G---LRACLVQSTMDCG 174 (478)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~-~-g---~~~~~~~~~~~~~ 174 (478)
.. ..................+..++|+..+.+............. . . .............
T Consensus 78 ~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (403)
T 3mtw_A 78 SL---------------EYSDRFWSVVQTANAKKTLEAGFTTVRNVGAADYDDVGLREAIDAGYVPGPRIVTAAISFGAT 142 (403)
T ss_dssp GG---------------GSCHHHHHHHHHHHHHHHHHTTEEEEEECCCSTTHHHHHHHHHHTTSSCCCEEEECCSCEEST
T ss_pred cc---------------cccHHHHhhhhhhhhhhccccccceeeccccccccchhhhhhhhccccccccccccccccccc
Confidence 10 1111112222233445677889999888765443322211111 1 1 1111110000000
Q ss_pred CCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEE--------EeccccccCCHHHHHHHHHHHHH
Q 011766 175 EGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIW--------FGIRQIMNATDRLLLETRDMARE 246 (478)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~a~~ 246 (478)
....... ............... ...+...........+....... ...........+.+.++++.+++
T Consensus 143 ~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 218 (403)
T 3mtw_A 143 GGHCDST---FFPPSMDQKNPFNSD-SPDEARKAVRTLKKYGAQVIKICATGGVFSRGNEPGQQQLTYEEMKAVVDEAHM 218 (403)
T ss_dssp TSTTSCC---SSCGGGCCCCTTCCC-SHHHHHHHHHHHHHTTCSEEEEECBCCSSSSSCCTTCBCSCHHHHHHHHHHHHH
T ss_pred ccccccc---ccccccccccccccc-hhHHHhhhhHhhhhhcchhhhhhhccccccccccccccccCHHHHHHHHHHHHH
Confidence 0000000 000000000000000 01112222222212221222111 11122334577889999999999
Q ss_pred cCCceeEeccCChhhhHHHhhhcCC----CCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhc
Q 011766 247 FKTGIHMHVAEIPYENQVVMDTRKV----DHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRM 322 (478)
Q Consensus 247 ~~~~v~~H~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 322 (478)
.+.++++|................. ............. ......+...............+.....++......
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (403)
T 3mtw_A 219 AGIKVAAHAHGASGIREAVRAGVDTIEHASLVDDEGIKLAVQ--KGAYFSMDIYNTDYTQAEGKKNGVLEDNLRKDRDIG 296 (403)
T ss_dssp TTCEEEEEECSHHHHHHHHHTTCSEEEECTTCCHHHHHHHHH--HTCEEECCCSTHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCeEEEEeccchhHHHHHHhcccccccccccccchhhhhcc--ccceeeeeeccchhhhhhhhccccchhhcccccccc
Confidence 9999999997754433222110000 0000000000000 000111111111222222222222111111111111
Q ss_pred -cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCC
Q 011766 323 -LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDN 401 (478)
Q Consensus 323 -~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~ 401 (478)
....+.+.+.+.|+.+.+|||.+.. ....++.++..... .|+|++|||+++|.|||+++|+++
T Consensus 297 ~~~~~~~~~~~~~g~~~~~gt~~~~~-~~~~~~~~~~~~~~---------------~gls~~eal~~~T~npA~~lgl~~ 360 (403)
T 3mtw_A 297 ELQRENFRKALKAGVKMVYGTDAGIY-PHGDNAKQFAVMVR---------------YGATPLQAIQSATLTAAEALGRSK 360 (403)
T ss_dssp HHHHHHHHHHHHHTCEEECCCCBTTB-CTTCGGGHHHHHHH---------------TTCCHHHHHHHTTHHHHHHHTCTT
T ss_pred ccccchhhHHHhcCCeEeeccCCccc-ccchHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHHHhCCCC
Confidence 2234667888999999999998654 23344444443321 269999999999999999999999
Q ss_pred CccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEE
Q 011766 402 DIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVM 454 (478)
Q Consensus 402 ~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~ 454 (478)
++|+|++||+|||||||.||+ +|+.. ..+|.+||++|++|.
T Consensus 361 ~~GsI~~G~~ADlvvld~dPl-----~di~~-------~~~v~~Vi~~G~vvk 401 (403)
T 3mtw_A 361 DVGQVAVGRYGDMIAVAGDPL-----ADVTT-------LEKPVFVMKGGAVVK 401 (403)
T ss_dssp TSSSCCTTSBCCEEEESSCTT-----TCGGG-------GGSCSEEEETTEEEE
T ss_pred CceeeCCCCcceEEEECCChh-----HhHhh-------hcCcCEEEECCEEEe
Confidence 999999999999999999854 33211 147999999999653
|
| >2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=268.51 Aligned_cols=351 Identities=18% Similarity=0.196 Sum_probs=214.1
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCC-CCEEeecccccccccchhhhccc
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQ-SQILLPGFVNTHVHTSQQLAKGI 97 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~-G~~v~PGfID~H~H~~~~~~~~~ 97 (478)
++++|+|++|++++ ..+.+++|+|+||+|++|++.... . .+.++||++ |++|+|||||+|+|+....
T Consensus 3 ~~~li~~~~v~~~~---~~~~~~~v~I~~g~I~~ig~~~~~----~-~~~~viD~~~g~~v~PGlID~H~H~~~~~---- 70 (396)
T 2vhl_A 3 ESLLIKDIAIVTEN---EVIKNGYVGINDGKISTVSTERPK----E-PYSKEIQAPADSVLLPGMIDIHIHGGYGA---- 70 (396)
T ss_dssp CCEEEEEEEEECSS---CEEEEEEEEEETTEEEEEESSCCS----S-CCSEEEECCTTCEEEECEEEEEECEETTE----
T ss_pred ccEEEEeeEEEcCC---ccccCceEEEECCEEEEEECCCCC----C-CCCceEcCCCCCEEcCCEEEEeecCCcCc----
Confidence 57899999999754 255778999999999999832110 0 245899999 9999999999999995421
Q ss_pred cCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC-HHH-------HHHHHHH-h----CCeE
Q 011766 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-VSE-------MAKAVEL-L----GLRA 164 (478)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~-~~~-------~~~~~~~-~----g~~~ 164 (478)
++. ..+.++. ....++++++||||+++++... ... ..+.... . |...
T Consensus 71 ----~~~------------~~~~e~~----~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~ 130 (396)
T 2vhl_A 71 ----DTM------------DASFSTL----DIMSSRLPEEGTTSFLATTITQEHGNISQALVNAREWKAAEESSLLGAEL 130 (396)
T ss_dssp ----EGG------------GCSHHHH----HHHHHHGGGGTEEEEEEECCSCCHHHHHHHHHHHHHHHHHCSGGGSSSEE
T ss_pred ----ccc------------CCCHHHH----HHHHHHHHcCCeeEEEecccCCCHHHHHHHHHHHHHHHhcccccccccce
Confidence 000 1222222 2456789999999999976432 211 1112221 2 3212
Q ss_pred EEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEE-EeccccccCCHHHHHHHHHH
Q 011766 165 CLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIW-FGIRQIMNATDRLLLETRDM 243 (478)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 243 (478)
+... ..+....+........ ........+.++++...+.+.++.+ +.++.... .++++.
T Consensus 131 ~~~~---~~~~~~~~~~~g~~~~-----------~~~~~~~~~~~~~~~~~~~~~ik~~~~~p~~~~~------~~~~~~ 190 (396)
T 2vhl_A 131 LGIH---LEGPFVSPKRAGAQPK-----------EWIRPSDVELFKKWQQEAGGLIKIVTLAPEEDQH------FELIRH 190 (396)
T ss_dssp EEEE---EECSSSCGGGCTTSCG-----------GGCCCCCHHHHHHHHHHTTTCEEEEEECGGGSGG------GHHHHH
T ss_pred EEEe---eecCccCccccCCCCH-----------HHccCCCHHHHHHHHHhcCCcceEEEECCCCCCH------HHHHHH
Confidence 1110 0111010000000000 0000012233333333334556532 33332221 256788
Q ss_pred HHHcCCceeE-eccCChhhhHHHhhhcCC---CCc-----hHHHHhhhCCC-----CCCe---eeeeeccCChhHHHHHH
Q 011766 244 AREFKTGIHM-HVAEIPYENQVVMDTRKV---DHG-----TVTFLDKIEFL-----QNNL---LSAHTVWVNHTEIGLLS 306 (478)
Q Consensus 244 a~~~~~~v~~-H~~~~~~~~~~~~~~~~~---~~~-----~~~~l~~~~~~-----~~~~---~i~h~~~~~~~~~~~~~ 306 (478)
+++.|+++++ |..+........... +. .|. ... ....+.+ ..+. ++.|+.++++++++.+.
T Consensus 191 a~~~g~~v~~gH~~~~~~~~~~a~~~-G~~~i~H~~~~~~~~~-~~~~G~~~~~~~~~~~~~e~~~h~~~l~~~~~~~~~ 268 (396)
T 2vhl_A 191 LKDESIIASMGHTDADSALLSDAAKA-GASHMTHLYNAMSPFH-HREPGVIGTALAHDGFVTELIADGIHSHPLAAKLAF 268 (396)
T ss_dssp HHHTTCEEEECSBCCCHHHHHHHHHT-TCCEESSTTSSBCCCC-SSSCHHHHHHHHCTTCEEEEECSSSSSCHHHHHHHH
T ss_pred HHHCCCEEeecccCCCHHHHHHHHHc-CCCEeEeCCccCcccc-cCCCCchhhhhcCCCcEEEEcCCccccCHHHHHHHH
Confidence 8999999998 998765544433321 11 000 000 0000000 0122 67899999999999888
Q ss_pred hc-CC-eEEECccchhhccCC-------CcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCC
Q 011766 307 RA-GV-KVSHCPASAMRMLGF-------APIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDP 377 (478)
Q Consensus 307 ~~-~~-~~~~~p~~~~~~~~~-------~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (478)
+. +. .+..+|..... .+. .++..+.+.| .+.+ +|+...+...+++.+++.+...
T Consensus 269 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~g-~~~~-~d~~~~g~~~~l~~~l~~~~~~-------------- 331 (396)
T 2vhl_A 269 LAKGSSKLILITDSMRA-KGLKDGVYEFGGQSVTVRGR-TALL-SDGTLAGSILKMNEGARHMREF-------------- 331 (396)
T ss_dssp HHHCTTSEEEECCBCTT-TTSCSEEEEETTEEEEEETT-EEEC-TTSCBCSBCCCHHHHHHHHHHH--------------
T ss_pred hhcCCccEEEECcChhh-cCCCCceEEECCeEEEEECC-EEEe-CCCcccccccCHHHHHHHHHHh--------------
Confidence 77 65 47777765431 111 1334456677 6666 7765554556788888765531
Q ss_pred CCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECC
Q 011766 378 AALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNK 457 (478)
Q Consensus 378 ~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g 457 (478)
.++|++++++++|.|||++||+++++|+|++|++|||||+|.+ .+|..||++|++|++++
T Consensus 332 ~~~~~~~~l~~aT~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~--------------------~~v~~v~~~G~~v~~~~ 391 (396)
T 2vhl_A 332 TNCSWTDIANITSENAAKQLGIFDRKGSVTVGKDADLVIVSSD--------------------CEVILTICRGNIAFISK 391 (396)
T ss_dssp HCCCHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEECTT--------------------CCEEEEEETTEEEEECS
T ss_pred cCCCHHHHHHHHHHHHHHHhCCcCCCceeCCCCcCCEEEECCC--------------------CcEEEEEECCEEEEecc
Confidence 1499999999999999999999877999999999999999986 58999999999999999
Q ss_pred eee
Q 011766 458 KIL 460 (478)
Q Consensus 458 ~~~ 460 (478)
++-
T Consensus 392 ~~~ 394 (396)
T 2vhl_A 392 EAD 394 (396)
T ss_dssp CCC
T ss_pred ccc
Confidence 874
|
| >3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-33 Score=272.82 Aligned_cols=366 Identities=14% Similarity=0.152 Sum_probs=216.8
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcccc
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~ 98 (478)
|+++|+|++|+|.+ ....+++|+|+||+|++|++..+ ..++++||++|++|+|||||+|+|+.....
T Consensus 1 m~~~i~~~~v~~~~---~~~~~~~v~i~~g~I~~i~~~~~------~~~~~~id~~g~~v~PG~iD~H~H~~~~~~---- 67 (428)
T 3mpg_A 1 MNYLFKNGRYMNEE---GKIVATDLLVQDGKIAKVAENIT------ADNAEVIDVNGKLIAPGLVDVHVHLREPGG---- 67 (428)
T ss_dssp CEEEEEEEEEECSS---SCEEEEEEEEESSBEEECCSSCC------CTTSEEEECTTCEEEECEEEEEECCCTTTC----
T ss_pred CcEEEEeeEEEeCC---CCeeeeeEEEECCEEEEecCCCC------CCCCeEEECCCCEEeeCEEEEeeccCCCCC----
Confidence 57899999999732 25677899999999999997542 135689999999999999999999843110
Q ss_pred CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC--------HHHHHHHHHHhCCeEEEeccc
Q 011766 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH--------VSEMAKAVELLGLRACLVQST 170 (478)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~ 170 (478)
...+. .....+.++++|||+++++.... .....+.....+...+.....
T Consensus 68 -------------------~~~~~----~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (428)
T 3mpg_A 68 -------------------EHKET----IETGTLAAAKGGFTTICAMPNTRPVPDCREHMEDLQNRIKEKAHVNVLPYGA 124 (428)
T ss_dssp -------------------TTTCC----HHHHHHHHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEECEE
T ss_pred -------------------CchhH----HHHHHHHHHhCCeEEEEeCCCCCCCCCcHHHHHHHHHHhcccCCcEEEEEee
Confidence 00111 12234557899999999975321 223344455556544433322
Q ss_pred ccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCc
Q 011766 171 MDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTG 250 (478)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 250 (478)
+..+ ....... +..++.+. + ... +..+..+..+++.+.++++.+++.|++
T Consensus 125 ~~~~----------~~~~~l~------------~~~~l~~~----G--~~~--~~~~~~~~~~~~~l~~~~~~a~~~g~~ 174 (428)
T 3mpg_A 125 ITVR----------QAGSEMT------------DFETLKEL----G--AFA--FTDDGVGVQDASMMLAAMKRAAKLNMA 174 (428)
T ss_dssp SBGG----------GCSSSBC------------CHHHHHHT----T--CCC--EECTTSCCCCHHHHHHHHHHHHHTTCC
T ss_pred EecC----------CCcchHH------------HHHHHHHh----C--CEE--EECCCcCCCCHHHHHHHHHHHHhcCCe
Confidence 2111 0111122 34444432 1 111 344566677899999999999999999
Q ss_pred eeEeccCChhhhHH-------Hhhh--cCCCCc----hH-HHHhhhCCCCCCeeeeeeccCC-hhHHHHHHhcCCe--EE
Q 011766 251 IHMHVAEIPYENQV-------VMDT--RKVDHG----TV-TFLDKIEFLQNNLLSAHTVWVN-HTEIGLLSRAGVK--VS 313 (478)
Q Consensus 251 v~~H~~~~~~~~~~-------~~~~--~~~~~~----~~-~~l~~~~~~~~~~~i~h~~~~~-~~~~~~~~~~~~~--~~ 313 (478)
+.+|+.+....... .... .+.... .+ ..+......+.+..+.|+.... -+.++.+++.|+. +.
T Consensus 175 v~vH~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~g~~~~i~H~s~~~~~~~i~~a~~~G~~v~~e 254 (428)
T 3mpg_A 175 VVAHCEENTLINKGCVHEGKFSEKHGLNGIPSVCESVHIARDILLAEAADCHYHVCHVSTKGSVRVIRDAKRAGIKVTAE 254 (428)
T ss_dssp EEECCCCGGGCTTCSEETTHHHHHTTCCEECTHHHHHHHHHHHHHHHHHTCCEEECSCCCHHHHHHHHHHHHTTCCEEEC
T ss_pred EEEECCChhHhhhHHhhcCccchhhCcCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHhcCCCEEEE
Confidence 99999765321100 0000 000000 00 1111122233455666665321 2445566666655 44
Q ss_pred ECccchhhc--------------------cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCH---H--------HHHHHHHH
Q 011766 314 HCPASAMRM--------------------LGFAPIKEMLHADICVSLGTDGAPSNNRMSI---V--------DEMYLASL 362 (478)
Q Consensus 314 ~~p~~~~~~--------------------~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~---~--------~~~~~~~~ 362 (478)
+||...... ....++.+++..|+.++++||+.++...... + .+......
T Consensus 255 ~~p~~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~~i~tDh~p~~~~~k~~~~~~~p~g~~g~e~~~~~~ 334 (428)
T 3mpg_A 255 VTPHHLVLCEDDIPSADPNFKMNPPLRGKEDHEALIEGLLDGTIDMIATDHAPHTAEEKAQGIERAPFGITGFETAFPLL 334 (428)
T ss_dssp BCHHHHHCCGGGCCSSCGGGCCSSCCCCHHHHHHHHHHHHHTSSCCBCCCBCCCCTTGGGSCTTTSCSCCCCTTTHHHHH
T ss_pred EchHHhEECHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHhCCCCcEEEcCCCCCCHHHcccCHhhCCCCceehhhHHHHH
Confidence 566532210 0112355678889999999999876322110 0 00111111
Q ss_pred HhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhh---hhhhcc-
Q 011766 363 INKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRIT---SLVYCM- 438 (478)
Q Consensus 363 ~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~---~~~~~~- 438 (478)
... .....++|++++++++|.|||+++|++ +|+|++|++|||||+|.+..+..+.++..+ ...+..
T Consensus 335 ~~~--------~~~~~~~~~~~~~~~~t~~~a~~~g~~--~g~i~~G~~Ad~~~~d~~~~~~~~~~~~~~~~~~~~~~g~ 404 (428)
T 3mpg_A 335 YTN--------LVKKGIITLEQLIQFLTEKPADTFGLE--AGRLKEGRTADITIIDLEQEEEIDPTTFLSKGKNTPFAGW 404 (428)
T ss_dssp HHH--------TTTTTSSCHHHHHHTTTHHHHHHHTCS--CSCCCTTSBCCEEEEESSCCEECCGGGCSSSCCCCSCTTC
T ss_pred HHH--------HHHcCCCCHHHHHHHHhHHHHHHhCCC--CccccCCCcCCEEEEcCCCCEEEchhhccccCCCCCcCCC
Confidence 111 112346999999999999999999994 799999999999999987433222111111 111111
Q ss_pred -CCCCeeEEEEccEEEEECCeee
Q 011766 439 -RTENVVSVMCNGQWVMKNKKIL 460 (478)
Q Consensus 439 -~~~~v~~v~v~G~~v~~~g~~~ 460 (478)
...+|.+||++|++||++|+++
T Consensus 405 ~~~g~v~~t~v~G~~v~~~g~~~ 427 (428)
T 3mpg_A 405 KCQGWPVMTIVGGKIAWQKESAL 427 (428)
T ss_dssp EECCEEEEEEETTEEEEECSCC-
T ss_pred EEeeEEEEEEECCEEEEeCCccc
Confidence 1346999999999999999875
|
| >4ac7_C Urease subunit alpha; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 4ubp_C* 1ie7_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-33 Score=273.63 Aligned_cols=338 Identities=18% Similarity=0.182 Sum_probs=201.8
Q ss_pred CccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhh-------hhccCCCeEEeCCCCEEeecccccccc
Q 011766 16 GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQ-------QFSQMADQIIDLQSQILLPGFVNTHVH 88 (478)
Q Consensus 16 ~~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~-------~~~~~~~~viD~~G~~v~PGfID~H~H 88 (478)
...++++|+|++|+++. . +..++|+|+||||++|++...... .....++++||++|++|+|||||+|+|
T Consensus 64 ~~~~dllI~n~~vvd~~---g-~~~~dI~I~dG~I~~Ig~~~~~~~~~~v~~~~~~~~~~~vIDa~G~~v~PG~ID~HvH 139 (570)
T 4ac7_C 64 ENVLDLLLTNALILDYT---G-IYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTAGGIDTHVH 139 (570)
T ss_dssp TTBCSEEEEEEEEEETT---E-EEEEEEEEETTEEEEEECCBCTTTCSSCCTTCBCCTTCEEEECTTCEEEECEEEEEEE
T ss_pred cCCCCEEEECeEEECCC---C-cEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEeCCCCEEeeCEEecccc
Confidence 34689999999999742 2 467899999999999998532100 001235689999999999999999999
Q ss_pred cchhhhccccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC------------HHH---H
Q 011766 89 TSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH------------VSE---M 153 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~------------~~~---~ 153 (478)
+... .. ...++++||||+++.+... ... +
T Consensus 140 ~~~P----------------------------g~--------~~aAl~gGvTTvv~gg~~p~~~~n~~p~~~~~~~l~~~ 183 (570)
T 4ac7_C 140 FINP----------------------------DQ--------VDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKM 183 (570)
T ss_dssp CCCT----------------------------TH--------HHHHHHTTEEEEEEECSSSCHHHHHSSCCCHHHHHHHH
T ss_pred cCCc----------------------------ch--------HHHHHhcCCeEEEecCcCcccccCCcCcCCcHHHHHHH
Confidence 8210 00 1357999999999643210 111 1
Q ss_pred HHHHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCC
Q 011766 154 AKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNAT 233 (478)
Q Consensus 154 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (478)
.+..+...+...... .+ ...... +..++.+ .+...++. +..+..+
T Consensus 184 l~aa~~~~v~~~~~g----~~-----------~~~~l~------------el~el~~----aGa~gfK~----~~~~~~~ 228 (570)
T 4ac7_C 184 LKSTEGLPINVGILG----KG-----------HGSSIA------------PIMEQID----AGAAGLKI----HEDWGAT 228 (570)
T ss_dssp HHHHTTCSSEEEEEE----EC-----------CCSSHH------------HHHHHHH----HTCCEEEE----EGGGCCC
T ss_pred HHHhhhCCeeEEEEe----cc-----------CCcCHH------------HHHHHHH----cCCCeEee----ccCCCCC
Confidence 222222222221110 00 000011 3333332 22223332 2334568
Q ss_pred HHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhC-CCCCCeeeeeeccCC-hhHHHHHHhcCCe
Q 011766 234 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIE-FLQNNLLSAHTVWVN-HTEIGLLSRAGVK 311 (478)
Q Consensus 234 ~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~h~~~~~-~~~~~~~~~~~~~ 311 (478)
++.+.++++.+++.++++.+|+....... . ....+.... .......+.|+.... ++.++++.+.++.
T Consensus 229 ~~~L~~aL~~A~~~g~~V~iHae~l~e~g-~----------Vedalea~~Gr~ih~~HiEgag~~hapd~i~~~~~~~vl 297 (570)
T 4ac7_C 229 PASIDRSLTVADEADVQVAIHSDTLNEAG-F----------LEDTLRAINGRVIHSFHVEGAGGGHAPDIMAMAGHPNVL 297 (570)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECCTTCSSC-C----------HHHHHHHHTTCCEEETTTTSTTSSSTTTGGGGGGSTTEE
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCcchhh-H----------HHHHHHHhCCCcceeEeeeccccccChHHHHHhccCCcc
Confidence 89999999999999999999998532211 0 111112111 000111122222222 4555555555554
Q ss_pred EEE-Cccc---------------------------------hhhccCCCcHHHHHHCCCcEEEcCCCCCCCCCcCH-HHH
Q 011766 312 VSH-CPAS---------------------------------AMRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSI-VDE 356 (478)
Q Consensus 312 ~~~-~p~~---------------------------------~~~~~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~-~~~ 356 (478)
.+. +|.. ..+.....+++.|++.|+.+++|||++...+.... ...
T Consensus 298 ps~t~Pt~p~~~n~~~e~ld~l~v~hhl~~~i~~D~~~a~~Rir~~~i~a~~~L~d~G~~v~~gSD~p~~~~~ge~~~~~ 377 (570)
T 4ac7_C 298 PSSTNPTRPFTVNTIDEHLDMLMVCHHLKQNIPEDVAFADSRIRPETIAAEDILHDLGIISMMSTDALAMGRAGEMVLRT 377 (570)
T ss_dssp EBCCGGGSSCBTTHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCHHHHHHHHHHHHTTSSCBCCCCBTTSSCTTCHHHHH
T ss_pred ccccCCCCCcccchhHHhhhheeeecccCccccchhHHHHhhhhhhhcccccchhhcCCEEEEECcccccCCcCcccCcH
Confidence 332 2220 00112355788999999999999999765332222 222
Q ss_pred HHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhh
Q 011766 357 MYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVY 436 (478)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~ 436 (478)
+..+......+.........++++++++||+++|.|||+++|+++++|+|++||.||||+||.+++.
T Consensus 378 ~~~a~~~~~~rg~l~~~~~~~~~~~~~eal~~~T~~~A~~lg~~~~~Gsi~~Gk~ADlvvld~d~~~------------- 444 (570)
T 4ac7_C 378 WQTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEPKFFG------------- 444 (570)
T ss_dssp HHHHHHHHHHHCSCTTCCTTCCHHHHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEECGGGTT-------------
T ss_pred HHHHHHHHHhcCCCCCccccccCCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCccCEEEECchhcc-------------
Confidence 2222221111111111111356799999999999999999999988999999999999999987431
Q ss_pred ccCCCCeeEEEEccEEEEEC
Q 011766 437 CMRTENVVSVMCNGQWVMKN 456 (478)
Q Consensus 437 ~~~~~~v~~v~v~G~~v~~~ 456 (478)
.++..||++|++||+.
T Consensus 445 ----~~v~~t~~~G~~v~~~ 460 (570)
T 4ac7_C 445 ----VKADRVIKGGIIAYAQ 460 (570)
T ss_dssp ----TSCSEEEETTEEEEEE
T ss_pred ----CceEEEEECCEEEEcc
Confidence 4789999999999974
|
| >4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1 c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=274.31 Aligned_cols=338 Identities=18% Similarity=0.182 Sum_probs=202.0
Q ss_pred CccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhh-------hhccCCCeEEeCCCCEEeecccccccc
Q 011766 16 GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQ-------QFSQMADQIIDLQSQILLPGFVNTHVH 88 (478)
Q Consensus 16 ~~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~-------~~~~~~~~viD~~G~~v~PGfID~H~H 88 (478)
...++++|+|++|+++. . +..++|+|+||||++|++...... .....++++||++|++|+|||||+|+|
T Consensus 64 ~~~~dllI~n~~vvd~~---g-~~~~dI~I~dG~I~~Ig~~~~~~~~~~v~~~~~~~~~~~vIDa~G~~v~PG~ID~HvH 139 (570)
T 4ubp_C 64 ENVLDLLLTNALILDYT---G-IYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTAGGIDTHVH 139 (570)
T ss_dssp TTBCSEEEEEEEEEETT---E-EEEEEEEEETTEEEEEECCBCTTTCTTCCTTCBCCTTCEEEECTTCEEEECEEEEEEE
T ss_pred cCCCCEEEECeEEECCC---C-cEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEeCCCCEEeeCEEEcccC
Confidence 34689999999999742 2 467899999999999998532100 001235689999999999999999999
Q ss_pred cchhhhccccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC------------HHH---H
Q 011766 89 TSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH------------VSE---M 153 (478)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~------------~~~---~ 153 (478)
+... .. ...++++||||+++.+... ... +
T Consensus 140 ~~~P----------------------------g~--------~~aAl~gGvTTvv~gg~~p~~~~n~~p~~~~~~~l~~~ 183 (570)
T 4ubp_C 140 FINP----------------------------DQ--------VDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKM 183 (570)
T ss_dssp CCCT----------------------------TH--------HHHHHHTTEEEEEEECCSSCHHHHHSSCCCHHHHHHHH
T ss_pred CCCc----------------------------ch--------HHHHHhcCCeEEEecCccccccCCCcCCCCcHHHHHHH
Confidence 8210 00 1357999999999643210 111 1
Q ss_pred HHHHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCC
Q 011766 154 AKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNAT 233 (478)
Q Consensus 154 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (478)
.+..+...+...... .+ ...... +..++.+ .+...++. +..+..+
T Consensus 184 l~aa~~~~v~~~~~g----~~-----------~~~~l~------------el~el~~----aGa~gfK~----~~~~~~~ 228 (570)
T 4ubp_C 184 LKSTEGLPINVGILG----KG-----------HGSSIA------------PIMEQID----AGAAGLKI----HEDWGAT 228 (570)
T ss_dssp HHHHTTCSSEEEEEE----EC-----------CCSSHH------------HHHHHHH----HTCCEEEE----EGGGCCC
T ss_pred HHHhhhCCeeEEEEe----cc-----------CCcCHH------------HHHHHHH----cCCCeEee----ccCCCCC
Confidence 222222222221110 00 000011 3333332 22223332 2334568
Q ss_pred HHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhC-CCCCCeeeeeeccCC-hhHHHHHHhcCCe
Q 011766 234 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIE-FLQNNLLSAHTVWVN-HTEIGLLSRAGVK 311 (478)
Q Consensus 234 ~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~h~~~~~-~~~~~~~~~~~~~ 311 (478)
++.+.++++.+++.++++.+|+....... . ....+.... .......+.|+.... ++.++++.+.++.
T Consensus 229 ~~~L~~aL~~A~~~g~~V~iHae~l~e~g-~----------Vedalea~~Gr~ih~~HiEgag~~hapd~i~~~~~~~vl 297 (570)
T 4ubp_C 229 PASIDRSLTVADEADVQVAIHSDTLNEAG-F----------LEDTLRAINGRVIHSFHVEGAGGGHAPDIMAMAGHPNVL 297 (570)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECCTTCSSC-C----------HHHHHHHHTTCCEEETTTTSTTSSSTTTGGGGGGSTTEE
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCcchhh-H----------HHHHHHHhCCCceeEEEecccccccChHHHHHhccCCcc
Confidence 89999999999999999999998532211 0 111112111 000111122222222 5555555555554
Q ss_pred EEE-Cccc---------------------------------hhhccCCCcHHHHHHCCCcEEEcCCCCCCCCCcCH-HHH
Q 011766 312 VSH-CPAS---------------------------------AMRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSI-VDE 356 (478)
Q Consensus 312 ~~~-~p~~---------------------------------~~~~~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~-~~~ 356 (478)
.+. +|.. ..+.....+++.|++.|+.+++|||++...+.... ...
T Consensus 298 ps~t~Pt~p~~~n~~~e~ld~l~v~hhl~~~i~~D~~~a~~Rir~~~i~a~~~L~d~G~~v~~gSD~p~~~~~ge~~~~~ 377 (570)
T 4ubp_C 298 PSSTNPTRPFTVNTIDEHLDMLMVCHHLKQNIPEDVAFADSRIRPETIAAEDILHDLGIISMMSTDALAMGRAGEMVLRT 377 (570)
T ss_dssp EBCCSTTSSCBTTHHHHHHHHHHHHHTCCTTSHHHHHHHHHHSCHHHHHHHHHHHHTTSSCBCCCCBTTSSCTTCHHHHH
T ss_pred ccccCCCCCcccchhHHhhhheeeecccCccccchhHHHHhhhhhhccccccchhhcCCEEEEECcccccCCcCcccCcH
Confidence 332 2220 00112355788999999999999999765332222 222
Q ss_pred HHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhh
Q 011766 357 MYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVY 436 (478)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~ 436 (478)
+..+......+.........++++++++||+++|.|||+++|+++++|+|++||.||||+||.+++.
T Consensus 378 ~~~a~~~~~~rg~l~~~~~~~~~~~~~eal~~~T~~~A~~lg~~~~~Gsi~~Gk~ADlvvld~d~~~------------- 444 (570)
T 4ubp_C 378 WQTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEPKFFG------------- 444 (570)
T ss_dssp HHHHHHHHHHHCSCTTCCSSCCHHHHHHHHHTTTHHHHHHHTCTTTSSSCCTTSBCCEEEECGGGTT-------------
T ss_pred HHHHHHHHHhcCCCCCccccccCCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCccCEEEECccccc-------------
Confidence 2222221111111111111356799999999999999999999988999999999999999987431
Q ss_pred ccCCCCeeEEEEccEEEEEC
Q 011766 437 CMRTENVVSVMCNGQWVMKN 456 (478)
Q Consensus 437 ~~~~~~v~~v~v~G~~v~~~ 456 (478)
.++..||++|++||+.
T Consensus 445 ----~~v~~t~~~G~~v~~~ 460 (570)
T 4ubp_C 445 ----VKADRVIKGGIIAYAQ 460 (570)
T ss_dssp ----TSCSEEEETTEEEEEE
T ss_pred ----CCeeEEEECCEEEEec
Confidence 4789999999999974
|
| >3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=277.83 Aligned_cols=377 Identities=13% Similarity=0.086 Sum_probs=216.8
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcccc
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~ 98 (478)
|+++|+|++|+++++ . .+++|+|+||+|++|++..+ ++++||++|++|+|||||+|+|+......
T Consensus 1 m~~~i~~~~v~~~~~---~-~~~~v~I~~G~I~~i~~~~~--------~~~viD~~g~~v~PG~ID~H~H~~~~~~~--- 65 (490)
T 3dc8_A 1 MSTVIKGGTIVTADL---T-YKADVKVEGGRIVEIGPNLS--------GAETLDATGCYVMPGGIDPHTHLEMPFMG--- 65 (490)
T ss_dssp -CEEEESCEEECSSC---E-EECEEEEETTEEEEEESSCC--------CSEEEECTTCEEEECEEEEEECTTCEETT---
T ss_pred CcEEEEccEEECCCC---c-eeeeEEEECCEEEEeccCCC--------CCeEEECCCCEEecCEEeeccccCCCCCC---
Confidence 478999999997643 2 56799999999999997532 46899999999999999999999542210
Q ss_pred CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC----HHHHHHHHHHhCCeEEEecccccCC
Q 011766 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH----VSEMAKAVELLGLRACLVQSTMDCG 174 (478)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~ 174 (478)
....++.. ...+.++++|||+++++.... .....+.......+..+.......
T Consensus 66 ------------------~~~~e~~~----~~~~aa~~~GvTtv~~~~~~~p~~~~~~~~~~~~~~a~~~~~d~~~~~~- 122 (490)
T 3dc8_A 66 ------------------TYSSDDFE----SGTRAALAGGTTMVVDFALPSPGQSLLEALTMWDNKSTRANCDYSFHMA- 122 (490)
T ss_dssp ------------------EECSCCHH----HHHHHHHHTTEEEEEEEECCC-CCCHHHHHHHHHHHTTTCSSEEEEEEE-
T ss_pred ------------------CCCHHHHH----HHHHHHHHcCEEeecccCCCCCCcCHHHHHHHHHHHhhcccceeeeEEE-
Confidence 01111111 233457899999999864322 222222222221111111000000
Q ss_pred CCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhc-CCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeE
Q 011766 175 EGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHH-HAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHM 253 (478)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~ 253 (478)
... ... +..+.+.++. ..+...++.+..+.....++++.+.++++.++++|.++++
T Consensus 123 --~~~-----~~~----------------~~l~el~~l~~~~G~~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 179 (490)
T 3dc8_A 123 --ITW-----WGE----------------QVFNEMETIVKDKGINTFKHFMAYKGALMVDDDEMFSSFQRCAALGALPLV 179 (490)
T ss_dssp --CCS-----CSH----------------HHHHHHHHHHHHSCCCEEEEESCSTTTTBCCHHHHHHHHHHHHHHTCEEEE
T ss_pred --Eec-----CcH----------------HHHHHHHHHHHhCCCCEEEEEecCCCCccCCHHHHHHHHHHHHhcCCEEEE
Confidence 000 000 1122233332 3444556665566666677899999999999999999999
Q ss_pred eccCChhhhHHHh-h--hcCC--------CCc------hH-HHHhhhCCCCCCeeeeeeccCC-hhHHHHHHhcCCe--E
Q 011766 254 HVAEIPYENQVVM-D--TRKV--------DHG------TV-TFLDKIEFLQNNLLSAHTVWVN-HTEIGLLSRAGVK--V 312 (478)
Q Consensus 254 H~~~~~~~~~~~~-~--~~~~--------~~~------~~-~~l~~~~~~~~~~~i~h~~~~~-~~~~~~~~~~~~~--~ 312 (478)
|+.+.. ...... . ..+. ... .+ ..+......+.+..+.|.+.-. -+.++.+++.|.. .
T Consensus 180 HaE~~~-~i~~~~~~~~~~g~~~~~~~~~~rP~~~E~~av~r~i~la~~~g~~lhi~HvSt~~~~~li~~ak~~G~~Vt~ 258 (490)
T 3dc8_A 180 HAENGD-VVAQLQAKLLAEGNSGPEAHAYSRPAEVEGEAANRAIMIADMAGCPVYIVHTSCEQAHEAIRRARAKGMRVFG 258 (490)
T ss_dssp ECSCHH-HHHHHHHHHHHTTCCSHHHHHHTSCHHHHHHHHHHHHHHHHHHTCCEEESSCCSHHHHHHHHHHHHTTCCEEE
T ss_pred ecCChH-HHHHHHHHHHhcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHCCCeEEE
Confidence 965432 211100 0 0000 000 00 1111122223444455544211 1345555666655 4
Q ss_pred EECccchhhc---------------cCCC---------cHHHHHHCCCcEEEcCCCCCCCCCc------CHHH-------
Q 011766 313 SHCPASAMRM---------------LGFA---------PIKEMLHADICVSLGTDGAPSNNRM------SIVD------- 355 (478)
Q Consensus 313 ~~~p~~~~~~---------------~~~~---------~~~~~~~~gv~v~~gsD~~~~~~~~------~~~~------- 355 (478)
.+||...... .-.+ .+.+.+..|...+++||+.++.... ++..
T Consensus 259 e~~ph~l~l~~~~~~~~~~~~~~~~~~~Pplr~~~d~~aL~~~l~~G~id~i~sDh~p~~~~~K~~g~~~f~~~~~G~~g 338 (490)
T 3dc8_A 259 EPLIQHLTLDETEYFDKDWDHAARRVMSPPFRNKLHQDSLWAGLASGSLQVVATDHCAFTTEQKRFGVGDFTRIPNGTGG 338 (490)
T ss_dssp CCBHHHHHCCGGGGGCSCHHHHHHTCCSSCCCCGGGHHHHHHHHHHTSSCCCBCCBCCCCHHHHGGGTTCGGGSCCCBCC
T ss_pred EEchHHheeCHHHhcCcCcccCCceEECCCCCChHHHHHHHHHHhcCCceEEECCCCCCCHHHhhccCCChhhCCCChHH
Confidence 5666432110 0112 2446678899999999998763100 0000
Q ss_pred -HHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcC------
Q 011766 356 -EMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVH------ 428 (478)
Q Consensus 356 -~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~------ 428 (478)
+..+..+...+ ....++|++++++++|.|||+++|+++++|+|++|++|||||||.+..+..+.+
T Consensus 339 le~~l~~~~~~~--------v~~~~l~~~~~~~~~t~~~A~~~gl~~~~G~l~~G~~ADlvv~d~~~~~~i~~~~~~s~~ 410 (490)
T 3dc8_A 339 LEDRMPMLWTYG--------VATGRITMNEFVAVTSTNIAKILNIYPKKGAILVGADADLVVWDPKRSKTISAKTQQSAI 410 (490)
T ss_dssp TTTHHHHHHHHH--------TTTTSSCHHHHHHHHTHHHHHHTTCTTTSSCCSTTSBCCEEEEEEEEEEECCTTTCSSSS
T ss_pred HHHHHHHHHHHH--------HHcCCCCHHHHHHHHHHHHHHHhCCCCCCCccCCCCcCCEEEEecCcceEechhhccccC
Confidence 00011111100 123469999999999999999999987889999999999999998732211111
Q ss_pred --ChhhhhhhccCCCCeeEEEEccEEEEECCeeeccc-HHHHH
Q 011766 429 --DRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLM-RGRLF 468 (478)
Q Consensus 429 --d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~-~~~~~ 468 (478)
+|+.... -...|.+||++|++||++|+++... .|+++
T Consensus 411 ~~sp~~g~~---~~g~v~~t~~~G~~v~~~g~~~~~~~~G~~~ 450 (490)
T 3dc8_A 411 DYNVFEGKT---VTGLPRFTLTRGVVSIEEGTVKTQEGHGEFV 450 (490)
T ss_dssp SCCTTTTCE---EEEEEEEEEETTEEEEETTEECCCTTCCCBC
T ss_pred CCCcccCcE---EeeEEEEEEECCEEEEECCEEcccCCCceec
Confidence 2322211 1257999999999999999998654 45544
|
| >3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure initiative, PSI-2, NEW YORK structural genomix research CON nysgxrc; 2.60A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=279.21 Aligned_cols=366 Identities=16% Similarity=0.170 Sum_probs=212.8
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcC--ChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhh
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQ--SADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLA 94 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~--~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~ 94 (478)
.+++++|+|++|+++++ . .+++|+|+||+|++|++ ..+ ..+.++||++|++|+|||||+|+|+.....
T Consensus 4 ~~~~~~i~~~~v~~~~~---~-~~~~v~i~~g~I~~i~~~~~~~------~~~~~~id~~g~~v~PG~ID~H~H~~~~~~ 73 (448)
T 3hm7_A 4 KRFDLIIRSSTVVTETT---T-YRADVAIRNGIVSAITEPGSIS------SDDGPAIDGTGLHLFPGMVDVHVHFNEPGR 73 (448)
T ss_dssp -CCSEEEEEEEEECSSC---E-EEEEEEEETTEEEEEESTTCSC------TTSSCEEECTTCEEEECEEEEEECCCTTTS
T ss_pred CcccEEEEeeEEECCCC---c-eEeEEEEECCEEEEeeCccCCC------CCCCeEEECCCCEEecCEEEeeeccCCCCC
Confidence 35789999999997543 2 67899999999999997 321 135689999999999999999999853210
Q ss_pred ccccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCC-cc-----CHHHHHH---HHHHhC-CeE
Q 011766 95 KGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAG-GQ-----HVSEMAK---AVELLG-LRA 164 (478)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~-~~-----~~~~~~~---~~~~~g-~~~ 164 (478)
...+ ......+.++++|||++++++ .. ....... .....+ +..
T Consensus 74 ------------------------~~~~---~~~~~~~~~~~~Gvtt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (448)
T 3hm7_A 74 ------------------------TEWE---GFASGSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVDY 126 (448)
T ss_dssp ------------------------GGGC---CSHHHHHHHHTTTEEEEEECSSSSSSCSCSHHHHHHHHTHHHHHCSSEE
T ss_pred ------------------------CcHh---HHHHHHHHHHhCCEEEEEeCCCCCCCCCChHHHHHHHHHHhccCCeeEE
Confidence 0000 011223457899999999976 32 1222221 222222 222
Q ss_pred EEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEecccc---ccCCHHHHHHHH
Q 011766 165 CLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQI---MNATDRLLLETR 241 (478)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~ 241 (478)
..... . . ..... +..++.+ .+...++.+..+... ...+.+.+.+.+
T Consensus 127 ~~~~~-~------~--------~~~~~------------~l~~l~~----~g~~~~~~~l~~~~~~~~~~~~~~~l~~~l 175 (448)
T 3hm7_A 127 RFWGG-L------V--------PGNID------------HLQDLHD----GGVIGFKAFMSECGTDDFQFSHDETLLKGM 175 (448)
T ss_dssp EEEEE-C------C--------TTCGG------------GHHHHHH----TTCSEEEEESSSCSSSSSCCCCHHHHHHHH
T ss_pred EEEEE-e------c--------ccCHH------------HHHHHHH----cCCCEEEEeeccccCCccCcCCHHHHHHHH
Confidence 11110 0 0 01111 4444443 233334433333221 345788999999
Q ss_pred HHHHHcCCceeEeccCChhhhHHHhhh--cCCCC--------------c-hHHHHhhhCCCCCCeeeeeeccCC-hhHHH
Q 011766 242 DMAREFKTGIHMHVAEIPYENQVVMDT--RKVDH--------------G-TVTFLDKIEFLQNNLLSAHTVWVN-HTEIG 303 (478)
Q Consensus 242 ~~a~~~~~~v~~H~~~~~~~~~~~~~~--~~~~~--------------~-~~~~l~~~~~~~~~~~i~h~~~~~-~~~~~ 303 (478)
+.+++.|+++.+|+.+........... .+... . ....+......+.+..+.|...-. -+.++
T Consensus 176 ~~a~~~g~~v~vH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~av~~~~~la~~~g~~~~i~H~s~~~~~~~i~ 255 (448)
T 3hm7_A 176 KKIAALGSILAVHAESNEMVNALTTIAIEEQRLTVKDYSEARPIVSELEAVERILRFAQLTCCPIHICHVSSRKVLKRIK 255 (448)
T ss_dssp HHHHHHTCCEEEECCCHHHHHHHHHHHHHTTCCSHHHHHHHSCHHHHHHHHHHHHHHHHHHTCCEEECCCCCHHHHHHHH
T ss_pred HHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCcChhhccccCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHH
Confidence 999999999999997644321100000 00000 0 011122222223455555654211 23455
Q ss_pred HHHhcCC--eEEECccchhhc-----------c---------CCCcHHHHHHCCCcEEEcCCCCCCCCCcC----HHH--
Q 011766 304 LLSRAGV--KVSHCPASAMRM-----------L---------GFAPIKEMLHADICVSLGTDGAPSNNRMS----IVD-- 355 (478)
Q Consensus 304 ~~~~~~~--~~~~~p~~~~~~-----------~---------~~~~~~~~~~~gv~v~~gsD~~~~~~~~~----~~~-- 355 (478)
.+++.|. .+.+||...... . ...++.+++..|+.++++||+.+...... +..
T Consensus 256 ~ak~~G~~v~~e~~ph~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~g~~~~i~tD~~p~~~~~k~~~~~~~~~ 335 (448)
T 3hm7_A 256 QAKGEGVNVSVETCPHYLLFSLDEFAEIGYLAKCAPPLRERQEVEDLWDGLMAGEIDLISSDHSPSLPQMKTGKTIFEVW 335 (448)
T ss_dssp HHHHTTCCEEEEECHHHHHCCHHHHHHHCSTTCCSSCCCCHHHHHHHHHHHHHTCCCEECCCBCCCCGGGGCCSSTTTSC
T ss_pred HHHhcCCCEEEEechHHHccCHHHhcCCCCeEEEcCCCCCHHHHHHHHHHHhcCCccEEEeCCCCCCHHHcccCCHhhCC
Confidence 5566654 567777543210 0 12235567788999999999876532111 000
Q ss_pred ------HHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCC
Q 011766 356 ------EMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHD 429 (478)
Q Consensus 356 ------~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d 429 (478)
+.....+... .....++|++++++++|.|||+++|+++++|+|++|++|||||+|.+..+..+.++
T Consensus 336 ~G~~g~e~~l~~~~~~--------~~~~~~l~~~~~~~~~t~~~A~~~g~~~~~g~l~~G~~Ad~~~~d~~~~~~~~~~~ 407 (448)
T 3hm7_A 336 GGIAGCQNTLAVMLTE--------GYHKRKMPLTQIVQLLSTEPAKRFGLYPQKGTIQVGAEASFTLIDLNESYTLNASD 407 (448)
T ss_dssp CCBCCTTTHHHHHHHH--------TTTTTCCCHHHHHHHHTHHHHHHHTCTTTSSCCSTTSBCCEEEEEEEEEEECCGGG
T ss_pred CCCccHHHHHHHHHHH--------HHhcCCcCHHHHHHHHhHHHHHHcCCCCCCCcccCCCcCCEEEEeCCCCEEEChHh
Confidence 1112222211 11245799999999999999999999888999999999999999987333222222
Q ss_pred hhhhhhhcc-----CCCCeeEEEEccEEEEECCe
Q 011766 430 RITSLVYCM-----RTENVVSVMCNGQWVMKNKK 458 (478)
Q Consensus 430 ~~~~~~~~~-----~~~~v~~v~v~G~~v~~~g~ 458 (478)
..+...+.. -..+|.+||++|++||++++
T Consensus 408 ~~~~~~~sp~~g~~~~g~v~~t~~~G~~v~~~~~ 441 (448)
T 3hm7_A 408 LYYRHPISPYVGQRFRGKVKHTICQGKHVYQDHE 441 (448)
T ss_dssp CCSSSCCCTTTTCEEEEEEEEEEETTEEEEECC-
T ss_pred cccccCCCCCCCCEEEEEEEEEEECCEEEEECCC
Confidence 222211111 12579999999999999986
|
| >3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-33 Score=275.69 Aligned_cols=372 Identities=16% Similarity=0.135 Sum_probs=216.6
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~ 96 (478)
.+++++|+|++|+++++ ....+++|+|+||+|++|++... ..+.++||++|++|+|||||+|+|+....++.
T Consensus 5 ~~~~~~i~~~~v~~~~~--~~~~~~~v~i~~g~I~~i~~~~~------~~~~~~id~~g~~v~PG~iD~H~H~~~~~~~~ 76 (480)
T 3gip_A 5 EKLDFKITGGWIIDGTG--APRRRADLGVRDGRIAAIGELGA------HPARHAWDASGKIVAPGFIDVHGHDDLMFVEK 76 (480)
T ss_dssp CCEEEEEESSEECCSSS--CCCEECEEEEETTEEEEEECCTT------SCEEEEEECTTSEEEECEEESSCCCTTHHHHS
T ss_pred ccCCEEEECcEEECCCC--CeeeeeEEEEECCEEEEecCCCC------CCCCeEEECCCCEEccCEEeccccccccccCC
Confidence 45789999999997553 34567899999999999998532 13568999999999999999999985432221
Q ss_pred ccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecC---------Cc-----------------cCH
Q 011766 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEA---------GG-----------------QHV 150 (478)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~---------~~-----------------~~~ 150 (478)
.. ....+.+|+||+++. .. ...
T Consensus 77 -------------------~~-------------~~~~~~~G~Tt~~~g~cG~~~~p~~~~~~~~~~~~l~~~~~~~~~~ 124 (480)
T 3gip_A 77 -------------------PD-------------LRWKTSQGITTVVVGNCGVSAAPAPLPGNTAAALALLGETPLFADV 124 (480)
T ss_dssp -------------------TT-------------CHHHHTTTEEEEEECCTTCCSCSCCCTTCCCGGGGGTCSSCCCSSH
T ss_pred -------------------hh-------------HHHHhcCCeeEEEecCCCcCCCCCCcccchhhhhhhhccCccccCH
Confidence 00 012488999999972 10 112
Q ss_pred HHHHHHHHHhCCeEEEec----ccc---cCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEE
Q 011766 151 SEMAKAVELLGLRACLVQ----STM---DCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIW 223 (478)
Q Consensus 151 ~~~~~~~~~~g~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (478)
....+.....+....+.. ... ..+. . ....+.+.+. +..+++++....+...++..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~g~~~~r~~~~g~-~----~~~~~~~~l~------------~m~~l~~~~~~~Ga~g~~~~ 187 (480)
T 3gip_A 125 PAYFAALDAQRPMINVAALVGHANLRLAAMRD-P----QAAPTAAEQQ------------AMQDMLQAALEAGAVGFSTG 187 (480)
T ss_dssp HHHHHHHHHSCCSSEEEEEEEHHHHHHHHCSS-T----TSCCCHHHHH------------HHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHhCCCCceEEEccccHHHHHHhcCC-c----CCCCCHHHHH------------HHHHHHHHHHHCCCcEEeec
Confidence 333333333332221111 000 0000 0 0001111111 34444443334444444433
Q ss_pred EeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhh-hHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCC----
Q 011766 224 FGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYE-NQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN---- 298 (478)
Q Consensus 224 ~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~---- 298 (478)
..+......+.+.+.++.+.++++|.++.+|+.+.... ... ..+.+......+.+..+.|.....
T Consensus 188 ~~y~p~~~~~~~el~~~~~~a~~~g~~v~~H~~~~~~~~~~a----------~~e~i~la~~~g~~v~i~H~s~~~~~~~ 257 (480)
T 3gip_A 188 LAYQPGAVAQAAELEGLARVAAERRRLHTSHIRNEADGVEAA----------VEEVLAIGRGTGCATVVSHHKCMMPQNW 257 (480)
T ss_dssp TTSTTGGGCCHHHHHHHHHHHHHTTCEEEEECSCSSTTHHHH----------HHHHHHHHHHHCCEEEETTCCCCSGGGT
T ss_pred CccCCcccCCHHHHHHHHHHHHHcCCEEEEEecCccccHHHH----------HHHHHHHHHHhCCCEEEEEEeccCccch
Confidence 32222223467778888899999999999999653221 111 112222222233445566665321
Q ss_pred ---hh---HHHHHHhcCC--eEEECccchhhc------------------------cC-----------CCcHH------
Q 011766 299 ---HT---EIGLLSRAGV--KVSHCPASAMRM------------------------LG-----------FAPIK------ 329 (478)
Q Consensus 299 ---~~---~~~~~~~~~~--~~~~~p~~~~~~------------------------~~-----------~~~~~------ 329 (478)
.+ .++.+++.|+ .+.++|...... .+ ..+..
T Consensus 258 ~~~~~~l~~i~~a~~~G~~Vt~e~~p~~~~~t~~~l~~~~~~~~~~~~~~~~~p~~~g~~~~~ia~~~~~~~~~a~~~~l 337 (480)
T 3gip_A 258 GRSRATLANIDRAREQGVEVALDIYPYPGSSTILIPERAETIDDIRITWSTPHPECSGEYLADIAARWGCDKTTAARRLA 337 (480)
T ss_dssp TTHHHHHHHHHHHHHTTCCEEEEECSCSCEEEECCGGGTTTSSCCEEEEESSCGGGTTCBHHHHHHHHTSCHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHcCCceEEEeeccccCcchhhhcCHHHHHHHhhccccCCCccCCCcHHHHHHHcCCCHHHHHHHhc
Confidence 33 4455566664 455666543210 00 11111
Q ss_pred --------------HHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHH
Q 011766 330 --------------EMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAK 395 (478)
Q Consensus 330 --------------~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~ 395 (478)
..+..+...++|||+.++.....+...-......... ....+.+|++++++++|.+||+
T Consensus 338 ~~g~i~~~~~~~~~~~~~~~~~~~~gsD~~~~~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~~~~~t~~~a~ 410 (480)
T 3gip_A 338 PAGAIYFAMDEDEVKRIFQHPCCMVGSDGLPNDARPHPRLWGSFTRVLGRY-------VREARLMTLEQAVARMTALPAR 410 (480)
T ss_dssp SEEEEECCCCHHHHHHHHHSTTEEECCCCCTTCSSCCTHHHHHHHHHHHCC-------CCCTCSSCHHHHHHHHTHHHHH
T ss_pred cCCeEEEeCCHHHHHHHHcCCCeEEecCCcccCCCCChhhhhhHHHHHHHH-------hhhcCCCCHHHHHHHHHHHHHH
Confidence 1123345678899987653322222211122222111 1123469999999999999999
Q ss_pred HcCCCCCccccccCccccEEEEcCCCCCCC-CcCChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHH
Q 011766 396 SVLWDNDIGSLEAGKKADMVVVDPFSWPMV-PVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQL 470 (478)
Q Consensus 396 ~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~-~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~ 470 (478)
++|+++ +|+|++|++|||||||.+..... ...++ ......|.+||++|++||++|++++ .+|++++.
T Consensus 411 ~~g~~~-~G~l~~G~~AD~vv~d~~~~~~~~~~~~~------~~~~~~v~~v~v~G~~v~~~g~~~~-~~G~~lr~ 478 (480)
T 3gip_A 411 VFGFAE-RGVLQPGAWADVVVFDPDTVADRATWDEP------TLASVGIAGVLVNGAEVFPQPPADG-RPGQVLRA 478 (480)
T ss_dssp HHTCTT-CSSCSTTSBCCEEEECTTTCBCCCCSSST------TCCCBSEEEEEETTEEEESSCCSSS-CCCCBCCC
T ss_pred HcCCCC-CCccCCCCCCCEEEEcCccccCccccccc------cccCCCccEEEECCEEEEECCeEcC-CCCcCcCC
Confidence 999965 59999999999999999864321 11122 1123579999999999999999999 88888753
|
| >1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6 c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A 1m7j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-32 Score=271.58 Aligned_cols=119 Identities=23% Similarity=0.247 Sum_probs=84.2
Q ss_pred cEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEE
Q 011766 337 CVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVV 416 (478)
Q Consensus 337 ~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv 416 (478)
++++|||+.+.+....+............ .......+|++++++++|.|||++||+++ +|+|++|++|||||
T Consensus 373 ~~~iGTD~~~~~~~~~~~~~~~~~~~l~~-------~v~~~~~l~~~~~l~~~T~~~A~~lgl~~-~G~i~~G~~ADlv~ 444 (496)
T 1rk6_A 373 PTMIGSDGLPHDERPHPRLWGTFPRVLGH-------YSRDLGLFPLETAVWKMTGLTAAKFGLAE-RGQVQPGYYADLVV 444 (496)
T ss_dssp TEEECCCCCTTCSSCCTHHHHHHHHHHCC-------CCCCTCSSCHHHHHHTTTHHHHHHHTCTT-CSSCCTTSBCCEEE
T ss_pred CEEEecCCCCCCCCCCchhhccHHHHHHH-------HHhhcCCCCHHHHHHHHHHHHHHHhCCCC-CCCcCCCCcccEEE
Confidence 68999999765321122222222222211 01123459999999999999999999954 79999999999999
Q ss_pred EcCCCCCCCCc-CChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHH
Q 011766 417 VDPFSWPMVPV-HDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQ 469 (478)
Q Consensus 417 ~d~~~~~~~~~-~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~ 469 (478)
+|.+++...+. .++.. ...+|..||++|++|+++|++++.+.|++++
T Consensus 445 ~d~~~~~~~~~~~~~~~------~~~~v~~v~v~G~~v~~~g~~~~~~~g~~l~ 492 (496)
T 1rk6_A 445 FDPATVADSATFEHPTE------RAAGIHSVYVNGAAVWEDQSFTGQHAGRVLN 492 (496)
T ss_dssp ECTTTCBCCCCSSSTTC------CCBSEEEEEETTEEEEETTEECSCCCCCBCC
T ss_pred EcCcccccccccccccc------cCCCceEEEECCEEEEECCeeccCCCceEee
Confidence 99986432221 12221 2357999999999999999999998888775
|
| >3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, structural genomics; 2.00A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-31 Score=261.02 Aligned_cols=360 Identities=15% Similarity=0.134 Sum_probs=211.5
Q ss_pred eEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCC
Q 011766 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (478)
Q Consensus 21 ~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~ 100 (478)
++|+|++|++ . ....+++|+|+||+|++|++..+. ..++++||++|++|+|||||+|+|+.....
T Consensus 2 ~~i~~~~v~~-~---~~~~~~~v~i~~g~I~~i~~~~~~-----~~~~~~id~~g~~v~PG~iD~H~H~~~~g~------ 66 (424)
T 3gri_A 2 KLIKNGKVLQ-N---GELQQADILIDGKVIKQIAPAIEP-----SNGVDIIDAKGHFVSPGFVDVHVHLREPGG------ 66 (424)
T ss_dssp EEEESCEEEE-T---TEEEECEEEEETTEEEEEESCCCC-----CSSCEEEECTTCEEEECEEEEEECCCTTTC------
T ss_pred EEEEeeEEEc-C---CCceeeeEEEECCEEEEecCCCCC-----CCCCeEEECCCCEEEeCeEEeeecCCCCCC------
Confidence 6899999997 2 356788999999999999986431 235689999999999999999999843210
Q ss_pred CCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC--------HHHHHHHHHHhCCeEEEeccccc
Q 011766 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH--------VSEMAKAVELLGLRACLVQSTMD 172 (478)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~ 172 (478)
...++ .....+.++++|||++++++... .....+.....+...+.....+.
T Consensus 67 -----------------~~~~~----~~~~~~~~~~~G~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (424)
T 3gri_A 67 -----------------EYKET----IETGTKAAARGGFTTVCPMPNTRPVPDSVEHFEALQKLIDDNAQVRVLPYASIT 125 (424)
T ss_dssp -----------------TTTCC----HHHHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEECCCEESB
T ss_pred -----------------CCHHH----HHHHHHHHHhCCEEEEeECcCCCCCCChHHHHHHHHHHhccCCCceEEEEEEEe
Confidence 00111 11234457899999999976421 22334445555653332221111
Q ss_pred CCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCcee
Q 011766 173 CGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIH 252 (478)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~ 252 (478)
.+ ...+... +..++. ..+ ... +..+..+..+++.+.++++.++++|++++
T Consensus 126 ~~----------~~~~~l~------------~l~~l~----~~G--~~~--~~~~~~~~~~~~~l~~~~~~a~~~g~~v~ 175 (424)
T 3gri_A 126 TR----------QLGKELV------------DFPALV----KEG--AFA--FTDDGVGVQTASMMYEGMIEAAKVNKAIV 175 (424)
T ss_dssp GG----------GCSSSBC------------CHHHHH----TTT--CCC--EEECSSCCCSHHHHHHHHHHHHHHTCCEE
T ss_pred cC----------CCcchHH------------HHHHHH----hcC--cEE--EecCCcCcCCHHHHHHHHHHHHhcCCEEE
Confidence 10 0111122 333333 222 222 34456677889999999999999999999
Q ss_pred EeccCChhhhH-------HHhhh--cCCCCchHH------HHhhhCCCCCCeeeeeeccCC-hhHHHHHHhcCC--eEEE
Q 011766 253 MHVAEIPYENQ-------VVMDT--RKVDHGTVT------FLDKIEFLQNNLLSAHTVWVN-HTEIGLLSRAGV--KVSH 314 (478)
Q Consensus 253 ~H~~~~~~~~~-------~~~~~--~~~~~~~~~------~l~~~~~~~~~~~i~h~~~~~-~~~~~~~~~~~~--~~~~ 314 (478)
+|+.+...... ..... .+.. ...+ .+......+.+..+.|..... -+.++.+++.|+ .+.+
T Consensus 176 ~H~e~~~~~~~~~~~~g~~~~~~~~~~~p-~~~E~~~v~r~~~la~~~g~~~~i~H~s~~~~~~~i~~ak~~G~~v~~e~ 254 (424)
T 3gri_A 176 AHCEDNSLIYGGAMHEGKRSKELGIPGIP-NICESVQIARDVLLAEAAGCHYHVCHVSTKESVRVIRDAKRAGIHVTAEV 254 (424)
T ss_dssp ECCCCGGGCTTCCEESSHHHHHHTCCEEC-THHHHHHHHHHHHHHHHHTCCEEECSCCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred EeCCCHHHHhhhhhhcCccchhhCCCCCC-HHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHcCCCEEEEe
Confidence 99976542110 00000 0000 0001 111112223455566655311 134455555664 4677
Q ss_pred Cccchhhc-----------cCCC---------cHHHHHHCCCcEEEcCCCCCCCCC------------cCHHHHHHHHHH
Q 011766 315 CPASAMRM-----------LGFA---------PIKEMLHADICVSLGTDGAPSNNR------------MSIVDEMYLASL 362 (478)
Q Consensus 315 ~p~~~~~~-----------~~~~---------~~~~~~~~gv~v~~gsD~~~~~~~------------~~~~~~~~~~~~ 362 (478)
||...... .-.+ .+.+++..|+.++++||+.++... ..-.+ ......
T Consensus 255 ~ph~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~L~~~l~~G~i~~igtDhap~~~~~k~~~~~~~~~G~~g~e-~~~~~~ 333 (424)
T 3gri_A 255 TPHHLLLTEDDIPGNNAIYKMNPPLRSTEDREALLEGLLDGTIDCIATDHAPHARDEKAQPMEKAPFGIVGSE-TAFPLL 333 (424)
T ss_dssp CHHHHHCCGGGCCSSCGGGCCSSCCCCHHHHHHHHHHHHTTSSCEECCCBCCCCHHHHTSCTTTSCCCCCCTT-THHHHH
T ss_pred cHHHHhcCHHHHhCcCceEEEeCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHccCCHhHCCCCCcccc-ccHHHH
Confidence 88643211 0112 344678889999999999765210 00000 011111
Q ss_pred HhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhh-----hhhc
Q 011766 363 INKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITS-----LVYC 437 (478)
Q Consensus 363 ~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~-----~~~~ 437 (478)
... ....+++|++++++++|.|||+++|+ ++|+|++|+.|||||||.+..+..+.++..+. +...
T Consensus 334 ~~~--------~~~~~~~~~~~~~~~~t~~~a~~~g~--~~g~l~~G~~Ad~~~~d~~~~~~~~~~~~~~~~~~sp~~g~ 403 (424)
T 3gri_A 334 YTH--------FVKNGDWTLQQLVDYLTIKPCETFNL--EYGTLKENGYADLTIIDLDSEQEIKGEDFLSKADNTPFIGY 403 (424)
T ss_dssp HHH--------HTTTSSCCHHHHHHHHTHHHHHHTTC--SCSCCCTTSBCCEEEEESSCCEECCGGGCSSSCCCCTTTTC
T ss_pred HHH--------HHHcCCCCHHHHHHHHhHHHHHHhCC--CCCcccCCCcCCEEEEcCCCCEEEchhhcccccCCCCcCCC
Confidence 110 01234699999999999999999999 57999999999999999984332222221111 0001
Q ss_pred cCCCCeeEEEEccEEEEECCe
Q 011766 438 MRTENVVSVMCNGQWVMKNKK 458 (478)
Q Consensus 438 ~~~~~v~~v~v~G~~v~~~g~ 458 (478)
....+|.+||++|++||++|+
T Consensus 404 ~~~g~v~~t~~~G~~v~~~g~ 424 (424)
T 3gri_A 404 KVYGNPILTMVEGEVKFEGDK 424 (424)
T ss_dssp EESCEEEEEEETTEEEEEC--
T ss_pred EEeeeEEEEEECCEEEEeCCC
Confidence 113579999999999999986
|
| >2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-34 Score=284.91 Aligned_cols=383 Identities=15% Similarity=0.164 Sum_probs=213.4
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~ 96 (478)
++++++|+|++|++++ . ..+++|+|+||+|++|++.... ..++++||++|++|+|||||+|+|+.....
T Consensus 6 ~~~~~lI~n~~vv~~~---~-~~~~~V~I~dG~I~~Ig~~~~~-----~~~~~vIDa~G~~v~PGlID~H~H~~~~~~-- 74 (521)
T 2ftw_A 6 QTGTILIKNGTVVNDD---R-YFKSDVLVENGIIKEISKNIEP-----KEGIKVVDATDKLLLPGGIDTHTHFQLPFM-- 74 (521)
T ss_dssp -CCCEEEESCEEECSS---C-EEECEEEEETTEEEEEESCCCC-----CSSCCEEECTTCEEEECEEEEEECTTCEET--
T ss_pred ccCCEEEECcEEECCC---C-ceeeeEEEECCEEEEecCCCCC-----CCCCeEEECCCCEEecCEEeeecccCcCCC--
Confidence 4578999999999753 2 3568999999999999975321 124589999999999999999999843210
Q ss_pred ccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc----CHHHHHHHHHHhC-CeEEEecccc
Q 011766 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ----HVSEMAKAVELLG-LRACLVQSTM 171 (478)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~----~~~~~~~~~~~~g-~~~~~~~~~~ 171 (478)
...+.++.+ ...+.++++|||++++++.. ......+...... ..........
T Consensus 75 -------------------~~~~~e~~~----~~~~~a~~~G~Ttv~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~g~h 131 (521)
T 2ftw_A 75 -------------------GTVSVDDFD----IGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVNCDYSLH 131 (521)
T ss_dssp -------------------TEECSSCHH----HHHHHHHHTTEEEEEEEECCCTTCCHHHHHHHHHHHHHTTCSSEEEEE
T ss_pred -------------------CccCHHHHH----HHHHHHHhCCcceecCcCCCCCCcCHHHHHHHHHHHhhcCceeeEeeE
Confidence 001112222 23355789999999986422 2222222111110 0000000000
Q ss_pred cCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCce
Q 011766 172 DCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGI 251 (478)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v 251 (478)
... +.+ ...... +..+++++ .+...++.+..++..+.++.+.+.++++.|+++|.++
T Consensus 132 ~~~----~~~----~~~~~~------------~l~~l~~~---~G~~~~k~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v 188 (521)
T 2ftw_A 132 VAI----TWW----SEQVSR------------EMEILVKE---RGVNSFKCFMAYKNSFMVTDQEMYHIFKRCKELGAIA 188 (521)
T ss_dssp EEC----CSC----CHHHHH------------HHHHHHHH---SCCCEEEEESSCTTTTBCCHHHHHHHHHHHHHHTCEE
T ss_pred Eee----cCC----ChhHHH------------HHHHHHHh---CCCCEEEEEeccCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence 000 000 000001 23333322 2445566666556666789999999999999999999
Q ss_pred eEeccCChhhhHHH--hhhcCCCC---------chHHH------HhhhCCCCCCeeeeeecc-CChhHHHHHHhcCCeEE
Q 011766 252 HMHVAEIPYENQVV--MDTRKVDH---------GTVTF------LDKIEFLQNNLLSAHTVW-VNHTEIGLLSRAGVKVS 313 (478)
Q Consensus 252 ~~H~~~~~~~~~~~--~~~~~~~~---------~~~~~------l~~~~~~~~~~~i~h~~~-~~~~~~~~~~~~~~~~~ 313 (478)
++|+.+........ +...+... ...+. +........+..+.|... ...+.++++++.|+.+.
T Consensus 189 ~vH~e~~~~~~~~~~~l~~~G~~~~~~h~~~~~~~~e~~a~~~~~~la~~~~~p~hi~h~ss~~~~~~i~~~r~~G~~v~ 268 (521)
T 2ftw_A 189 QVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTPVYIVHVQSIGAADVICKHRKEGVRVY 268 (521)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCCSTHHHHHHSCTHHHHHHHHHHHHHHHHHTCCEEECSCCCHHHHHHHHHHHHTTCCEE
T ss_pred EEEcCCHHHHHHHHHHHHHcCCCChhhccccCcHHHHHHHHHHHHHHHHHhCCCEEEEecCcHHHHHHHHHHHHcCCeEE
Confidence 99996432111111 11111110 00111 111111223333444332 11234566777887643
Q ss_pred ECccchhhc------------------cCCCc----------HHHHHHCCCcEEEcCCCCCCCCCc------CHH-----
Q 011766 314 HCPASAMRM------------------LGFAP----------IKEMLHADICVSLGTDGAPSNNRM------SIV----- 354 (478)
Q Consensus 314 ~~p~~~~~~------------------~~~~~----------~~~~~~~gv~v~~gsD~~~~~~~~------~~~----- 354 (478)
++.....+ ...+| +.+++..|...+++||+.+..... ++.
T Consensus 269 -~e~~~~~L~~d~~~~~~~~~~~~~~~~~~Pplr~~~~~~~~l~~~l~~g~~~~~gsD~~~~~~~~k~~~~~~~~~~p~G 347 (521)
T 2ftw_A 269 -GEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRPDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNG 347 (521)
T ss_dssp -ECCBHHHHHCCGGGGGCSSHHHHHTTCCSSCCCCCTTHHHHHHHHHHHTSSCCCBCCBCCCCHHHHGGGTTCGGGSCCC
T ss_pred -EEEcchhhccCHHHhcCCCcccCcceEEcCCCCCChhhHHHHHHHhcCCCEEEEEeCCCCCCHHHhhcccCChhhCCCC
Confidence 22211100 11122 233788999999999986542000 000
Q ss_pred ---HHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCc----
Q 011766 355 ---DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPV---- 427 (478)
Q Consensus 355 ---~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~---- 427 (478)
.+.++...... .....++|++++++++|.|||+++|+++++|+|++|++|||||||.+.......
T Consensus 348 ~~G~e~~l~~~~~~--------~v~~~~l~~~~~~~~~t~~~A~~~gl~~~~G~i~~G~~ADlvv~d~~~~~~i~~~~~~ 419 (521)
T 2ftw_A 348 VNGVEDRMSIVWEN--------GVNTGKLTWCQFVRATSSERARIFNIYPRKGRIDVGCDGDIVIWDPNQSKTISKDTHH 419 (521)
T ss_dssp BCCTTTHHHHHHHH--------HTTTTSSCHHHHHHHHTHHHHHHTTCTTTSSCCSTTSBCCEEEEEEEEEEECCTTTCC
T ss_pred CccHHHHHHHHHHH--------HHhcCCCCHHHHHHHhChhHHHHhCCCCCCCCcCCCCcCCEEEEeCCCCEEEChHHcc
Confidence 00000000000 012346999999999999999999998889999999999999999884321111
Q ss_pred ----CChhhhhhhccCCCCeeEEEEccEEEEECCeeec-ccHHHHH
Q 011766 428 ----HDRITSLVYCMRTENVVSVMCNGQWVMKNKKILL-LMRGRLF 468 (478)
Q Consensus 428 ----~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~-~~~~~~~ 468 (478)
.+|+.... ....|..||++|++||++|+++. ...|+++
T Consensus 420 ~~~~~~p~~g~~---~~g~v~~v~v~G~~v~~~g~~~~~~~~G~~~ 462 (521)
T 2ftw_A 420 HAVDFNIFEGIK---VTGIAVTTIVAGNIVWSDNKLSCVKGSGRFV 462 (521)
T ss_dssp CSSSCCTTTTCE---EEEEEEEEEETTEEEEETTEECCCTTCCCBC
T ss_pred ccCCCCCcCCCE---eeeeEEEEEECCEEEEECCeecccCcCceEe
Confidence 12222211 12468999999999999999983 3445555
|
| >3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-32 Score=255.52 Aligned_cols=346 Identities=16% Similarity=0.132 Sum_probs=201.6
Q ss_pred eEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCC
Q 011766 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADD 100 (478)
Q Consensus 21 ~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~ 100 (478)
++|+|++|++++ ..+.+++|+|+||||++|++..+. ..+.++||++|++|+|||||+|+|.....
T Consensus 5 ~~i~n~~i~~~~---~~~~~~~i~I~dG~I~~i~~~~~~-----~~~~~viD~~G~~v~PGfID~HvHg~~G~------- 69 (381)
T 3iv8_A 5 YALTNCKIYTGN---DVLVKHAVIINGDKIEAVCPIESL-----PSEMNVVDLNGANLSPGFIDLQLNGCGGV------- 69 (381)
T ss_dssp EEEEEEEEECSS---CEESSEEEEEETTEEEEEEEGGGS-----CTTCEEEEEEEEEEEECEEEEEECEETTE-------
T ss_pred EEEEccEEEcCC---CeEeccEEEEECCEEEEEeCCCCC-----CCCCeEEECCCCEEccCeEeeeecccCCC-------
Confidence 589999999753 456778999999999999975432 13568999999999999999999984311
Q ss_pred CCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC-HHHH-------HHHHHHhCCeEEEeccccc
Q 011766 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-VSEM-------AKAVELLGLRACLVQSTMD 172 (478)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~-~~~~-------~~~~~~~g~~~~~~~~~~~ 172 (478)
++ ....+ ........+.+++.|||+++...... ...+ .+.....+.. . .....
T Consensus 70 -~~-----------~d~~~----~e~l~~~~~a~~~~GvTt~l~t~~T~~~e~l~~al~~~~~~~~~~~~~-i--lGiHl 130 (381)
T 3iv8_A 70 -MF-----------NDEIT----AETIDTMHKANLKSGCTSFLPTLITSSDENMRQAIAAAREYQAKYPNQ-S--LGLHL 130 (381)
T ss_dssp -ET-----------TTSCS----HHHHHHHHHHHHHTTEEEEEEEEESCCHHHHHHHHHHHHHHHHHCSSS-B--CCEEE
T ss_pred -CC-----------CCCCC----HHHHHHHHHHHHhCCccccccccCCCCHHHHHHHHHHHHHHHhcCCCc-e--eEeec
Confidence 00 00011 11223345567899999999854222 2211 1111111111 0 11222
Q ss_pred CCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCcee
Q 011766 173 CGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIH 252 (478)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~ 252 (478)
.|+.+++.....+.+..+.+ ...+.++++..... .++.+.-.++.. . .+.++.+++.|+.+.
T Consensus 131 EGPfis~~~~Ga~~~~~i~~-----------p~~~~~~~~~~~~~-~i~~vTlAPE~~--~----~~~i~~l~~~gi~vs 192 (381)
T 3iv8_A 131 EGPYLNVMKKGIHSVDFIRP-----------SDDTMIDTICANSD-VIAKVTLAPENN--K----PEHIEKLVKAGIVVS 192 (381)
T ss_dssp ECSSCCGGGCTTSCTTTCCC-----------CCHHHHHHHHHTTT-SEEEEEECCTTS--C----HHHHHHHHHTTCEEE
T ss_pred cCcccCHhhcCCCCHHHcCC-----------CCHHHHHHHHhccC-CeEEEEECCCCC--c----HHHHHHHHHCCCEEE
Confidence 44444444444333333331 22233334333333 466543322221 2 244566778888887
Q ss_pred EeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCC----------------eeeeeeccCChhHHHHHHhcCCeEEECc
Q 011766 253 MHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNN----------------LLSAHTVWVNHTEIGLLSRAGVKVSHCP 316 (478)
Q Consensus 253 ~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------~~i~h~~~~~~~~~~~~~~~~~~~~~~p 316 (478)
+......++.....-..+. ....+.++.+..+..| .+|.++.|+++..++.+.+....-.+..
T Consensus 193 ~GHs~A~~e~~~~a~~~Ga-~~~THlfNaM~~~~hR~PG~vga~l~~~~~~~elI~DG~Hv~p~~~~~~~~~~g~~~~lv 271 (381)
T 3iv8_A 193 IGHTNATYSEARKSFESGI-TFATHLFNAMTPMVGREPGVVGAIYDTPEVYAGIIADGFHVDYANIRIAHKIKGEKLVLV 271 (381)
T ss_dssp ECSBCCCHHHHHHHHHTTC-CEESSTTSSBCCCBTTBCHHHHHHHHCTTCEEEEECSSSSSCHHHHHHHHHHHGGGEEEE
T ss_pred ecCCCCCHHHHHHHHHcCC-CEeeeCCCCCCCccCCCCchHHHHhcCCCcEEEEEcCCccCCHHHHHHHHHhcCCEEEEE
Confidence 6333322221111101111 0011222222222111 3788999999999887765431212222
Q ss_pred cchhhccCCCcHHHH-------HHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHH
Q 011766 317 ASAMRMLGFAPIKEM-------LHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMA 389 (478)
Q Consensus 317 ~~~~~~~~~~~~~~~-------~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~ 389 (478)
+..++..+.++-... ++.| .+...|+...++..++++.++.+... .++|+++|++++
T Consensus 272 TDam~a~G~~dg~y~lgg~~v~v~~g--~~~l~~g~lAGs~l~l~~~v~~~v~~--------------~g~~~~~al~~a 335 (381)
T 3iv8_A 272 TDATAPAGAEMDYFIFVGKKVYYRDG--KCVDENGTLGGSALTMIEAVQNTVEH--------------VGIALDEALRMA 335 (381)
T ss_dssp CCBCTTTTSCCSEEESSSCEEEEETT--EEECTTCCBCSBCCCHHHHHHHHHHT--------------TCCCHHHHHHHH
T ss_pred eCcccccCCCCCeeecCCeEEEEECC--EEEcCCCCccChhhhHHHHHHHHHHh--------------hCCCHHHHHHHH
Confidence 333443333322211 1222 12234665566778899888776521 259999999999
Q ss_pred hHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEE
Q 011766 390 TINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMK 455 (478)
Q Consensus 390 T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~ 455 (478)
|.|||+++|+++++|+|++|++||||+||.+ .+|..||++|++||.
T Consensus 336 T~~pA~~lg~~~~~G~i~~G~~ADlvvld~~--------------------~~v~~t~~~G~~v~~ 381 (381)
T 3iv8_A 336 TLYPAKAIGVDEKLGRIKKGMIANLTVFDRD--------------------FNVKATVVNGQYEQN 381 (381)
T ss_dssp THHHHHHHTCTTTSSSCCTTSBCCEEEECTT--------------------CCEEEEEETTEEEEC
T ss_pred HHHHHHHhCCCCCCceECCCCcCCEEEECCC--------------------CCEEEEEECCEEeeC
Confidence 9999999999888899999999999999986 589999999999874
|
| >2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation, dihydropyrimi amidohydrolase, nucleotide metabolism, DPYS, dhpase, hydrolase; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-32 Score=274.61 Aligned_cols=383 Identities=16% Similarity=0.165 Sum_probs=211.4
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccc
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGI 97 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~ 97 (478)
+++++|+|++|++++ . ..+++|+|+||+|++|++..+.+... ..+.++||++|++|+|||||+|+|+.....
T Consensus 26 ~~~~lI~ng~Vv~~~---~-~~~~dV~I~dGrI~~Ig~~~~~~~~~-~~~~~vIDa~G~~V~PG~ID~H~Hl~~~~~--- 97 (541)
T 2vr2_A 26 PSRLLIRGGRVVNDD---F-SEVADVLVEDGVVRALGHDLLPPGGA-PAGLRVLDAAGKLVLPGGIDTHTHMQFPFM--- 97 (541)
T ss_dssp -CEEEEESCEEECSS---C-EEECEEEEETTEEEEEEC------------CEEEECTTSEEEECEEEEEECTTCBCS---
T ss_pred cCCEEEECcEEEcCC---C-ceEeeEEEECCEEEEeccCCCCCccc-ccCceEEECCCCEEccCEEEecccCCCCCC---
Confidence 478999999999753 2 34689999999999999754321100 012379999999999999999999854210
Q ss_pred cCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc----CHHHHHHHHHHhCCeEEEecccccC
Q 011766 98 ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ----HVSEMAKAVELLGLRACLVQSTMDC 173 (478)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~ 173 (478)
.....++.+ ...+.++++||||++++... ......+........ ....+.
T Consensus 98 ------------------~~~~~e~~~----~~~~~al~~GvTtv~d~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~ 151 (541)
T 2vr2_A 98 ------------------GSRSIDDFH----QGTKAALSGGTTMIIDFAIPQKGGSLIEAFETWRSWADP----KVCCDY 151 (541)
T ss_dssp ------------------SSBCSCCTT----HHHHHHHTTTEEEEEEEECCCTTCCHHHHHHHHHHHHTT----TCSSEE
T ss_pred ------------------CCcCHHHHH----HHHHHHHhCCeeeeccccCCCCCCCHHHHHHHHHHHhcc----CceEEE
Confidence 000111111 12345789999999986422 222222221111000 000000
Q ss_pred CCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeE
Q 011766 174 GEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHM 253 (478)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~ 253 (478)
+ +.... ......... +..++++ ..+...++.+..++..+.++.+.+.++++.+++++.++++
T Consensus 152 g--~h~~~-~~~~~~~~~------------el~~l~~---~~G~~~~k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 213 (541)
T 2vr2_A 152 S--LHVAV-TWWSDQVKE------------EMKILVQ---DKGVNSFKMFMAYKDLYMVTDLELYEAFSRCKEIGAIAQV 213 (541)
T ss_dssp E--EEEEE-CSCSHHHHH------------HHHHHHH---TSCCCEEEEESSSTTTTBCCHHHHHHHHHHHHHHTCEEEE
T ss_pred e--eeecc-cCCCHHHHH------------HHHHHHH---hCCCCEEEEEeccCCccCCCHHHHHHHHHHHHHcCCEEEE
Confidence 0 00000 000000000 2222222 2345567766666677778999999999999999999999
Q ss_pred eccCChhhhHHHh--hhcCCCC---------chHHHHh------hhCCCCCCeeeeeecc-CChhHHHHHHhcCCeEEEC
Q 011766 254 HVAEIPYENQVVM--DTRKVDH---------GTVTFLD------KIEFLQNNLLSAHTVW-VNHTEIGLLSRAGVKVSHC 315 (478)
Q Consensus 254 H~~~~~~~~~~~~--~~~~~~~---------~~~~~l~------~~~~~~~~~~i~h~~~-~~~~~~~~~~~~~~~~~~~ 315 (478)
|+.+......... ...+... ...+... ..........+.|... ...+.++.+++.|..+. +
T Consensus 214 H~e~~~~~~~~~~~l~~~G~~~~~~h~~~~~~~~e~~a~~~~~~la~~~~~p~~~~h~ss~~~~~~i~~ar~~G~~v~-~ 292 (541)
T 2vr2_A 214 HAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPLYIVHVMSKSAAKVIADARRDGKVVY-G 292 (541)
T ss_dssp ECSCHHHHHHHHHHHHHTTCCSTHHHHHTSCHHHHHHHHHHHHHHHHHHTCCEEEEEECCHHHHHHHHHHHHTTCCEE-E
T ss_pred EcCCHHHHHHHHHHHHHcCCCChhhccccchhHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHcCCeEE-E
Confidence 9954321111111 1111110 0011110 0111223344455432 11233455667776542 2
Q ss_pred ccchhhc------------------cCCCc----------HHHHHHCCCcEEEcCCCCCCCCCcCHHHH-----------
Q 011766 316 PASAMRM------------------LGFAP----------IKEMLHADICVSLGTDGAPSNNRMSIVDE----------- 356 (478)
Q Consensus 316 p~~~~~~------------------~~~~~----------~~~~~~~gv~v~~gsD~~~~~~~~~~~~~----------- 356 (478)
+.....+ ...+| +.+++..|+..+++||+.++. +...
T Consensus 293 e~~~~~L~~d~~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~g~~~~~gtD~~~~~----~~~k~~~~~~~~~~p 368 (541)
T 2vr2_A 293 EPIAASLGTDGTHYWNKEWHHAAHHVMGPPLRPDPSTPDFLMNLLANDDLTTTGTDNCTFN----TCQKALGKDDFTKIP 368 (541)
T ss_dssp EEBHHHHHCCSGGGGCSSHHHHHTTCCSSCCCSCTTHHHHHHHHHHTTSSCCCBCCBCCCC----HHHHGGGSSCGGGSC
T ss_pred EeehhhhcCCHHHhcCccccccCceEECCCCCCCcchHHHHHHHHhcCCeEEEEeCCCCCC----hHHhcccCCChhhCC
Confidence 2211110 01122 345788999999999987642 1110
Q ss_pred -------HHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCc--
Q 011766 357 -------MYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPV-- 427 (478)
Q Consensus 357 -------~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~-- 427 (478)
.++....... ....++|++++++++|.|||+++|+++++|+|++|++|||||||.+..+..+.
T Consensus 369 ~G~~G~e~~l~~~~~~~--------v~~~~l~~~~~~~~~T~~pA~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~~ 440 (541)
T 2vr2_A 369 NGVNGVEDRMSVIWEKG--------VHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPKGTRTISAKT 440 (541)
T ss_dssp CCBCCTTTHHHHHHHHH--------TTTTSSCHHHHHHHHTHHHHHHTTCTTTSSCCSTTSBCCEEEEEEEEEEECCTTT
T ss_pred CCCccHHHHHHHHHHHH--------HHcCCCCHHHHHHHHhHHHHHHhCCCCCCCccCCCCCCCEEEEcCCcCeEeCHHH
Confidence 0111111100 12346999999999999999999998889999999999999999874322221
Q ss_pred ------CChhhhhhhccCCCCeeEEEEccEEEEECCeeecc-cHHHHH
Q 011766 428 ------HDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLL-MRGRLF 468 (478)
Q Consensus 428 ------~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~-~~~~~~ 468 (478)
.+|+..... ...|..||++|++||++|+++.. ..|+++
T Consensus 441 ~~~~~~~~p~~g~~~---~g~v~~v~v~G~~v~~~g~~~~~~~~G~~~ 485 (541)
T 2vr2_A 441 HHQAVNFNIFEGMVC---HGVPLVTISRGKVVYEAGVFSVTAGDGKFI 485 (541)
T ss_dssp CSSSCSCCTTTTCEE---EEEEEEEEETTEEEEETTEECCCTTCSCBC
T ss_pred hhcccCCCccCCCEE---eeeEEEEEECCEEEEECCeeccCCCCceEe
Confidence 233332221 13689999999999999999843 345544
|
| >3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-30 Score=254.49 Aligned_cols=371 Identities=16% Similarity=0.166 Sum_probs=193.1
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKG 96 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~ 96 (478)
+|.+++|+||+|+|+++ +.++++++|+|+||||++|++.... +.++++||++|++|+|||||+|+|+.......
T Consensus 2 sM~~lli~ng~i~d~~~-~~~~~~~dV~I~~G~I~~Ig~~~~~-----~~~~~vID~~G~~v~PGfID~H~H~~~~~~~~ 75 (426)
T 3mkv_A 2 SLTTFLFRNGALLDPDH-PDLLQGFEILIEDGFIREVSDKPIK-----SSNAHVIDVKGKTIMPGLIDLHVHVVAIEFNL 75 (426)
T ss_dssp -CCEEEEEEEEECCTTS-SSCEEEEEEEEETTEEEEEESSCCC-----CSSCEEEECTTCEEEECEEEEEECTTCCSSCH
T ss_pred CcCcEEEECeEEEeCCC-CcEecCcEEEEECCEEEEecCCCCC-----CCCCEEEECCCCEEEeChhhhhhCcccccCCc
Confidence 57789999999997654 3567888999999999999986432 24679999999999999999999985432110
Q ss_pred ccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCHHHHHHHHHHhC----CeEEEeccccc
Q 011766 97 IADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELLG----LRACLVQSTMD 172 (478)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~ 172 (478)
. ........................++|+............ .....+ ...........
T Consensus 76 -------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 137 (426)
T 3mkv_A 76 -------P---------RVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGYPFK--QAVESGLVEGPRLFVSGRALS 137 (426)
T ss_dssp -------H---------HHTTSCHHHHHHHHHHHHHHHHHTTEEEEEECSSCCHHHH--HHHHTTSSCCCEEEECCSEEE
T ss_pred -------c---------cccccchhHHHHHHHhhhhhhhcccccccccccccchhhh--hHhhccceeeceecccccccc
Confidence 0 0111222222223333445566778888776654433221 112222 21111111110
Q ss_pred C--CCCCCCccc---ccCCcccC-CCCCCccc-cccchhHHHHHHHhcCCCCCCeEEEE--------eccccccCCHHHH
Q 011766 173 C--GEGLPASWA---VRTTDDCI-QPDSSISF-NFVSSSQKELYAKHHHAADGRIRIWF--------GIRQIMNATDRLL 237 (478)
Q Consensus 173 ~--~~~~~~~~~---~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l 237 (478)
. +........ ........ ........ .................+........ .............
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (426)
T 3mkv_A 138 QTGGHADPRARSDYMPPDSPCGCCVRVGALGRVADGVDEVRRAVREELQMGADQIKIMASGGVASPTDPVGVFGYSEDEI 217 (426)
T ss_dssp CTTSTTCCCCCSSBCCCSSSCSSBCCTTCSEEECCSHHHHHHHHHHHHHHTCSSEEEECBCCSSCSSCCTTSBCSCHHHH
T ss_pred ccccccchhhhhhccccccccchhhhhccccccccCHHHHHHHHHHHhhcccccccccccccccccccccccchhhHHHH
Confidence 0 000000000 00000000 00000000 00011222222222111111111111 1112223445555
Q ss_pred HHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECcc
Q 011766 238 LETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPA 317 (478)
Q Consensus 238 ~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~ 317 (478)
...+..+.........+............ .+ .....+...............+.....++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (426)
T 3mkv_A 218 RAIVAEAQGRGTYVLAHAYTPAAIARAVR---------------CG----VRTIEHGNLIDDETARLVAEHGAYVVPTLV 278 (426)
T ss_dssp HHHHHHHHTTTCCEEEEECSHHHHHHHHH---------------TT----CCEEEECTTCCHHHHHHHHHHTCEEECCHH
T ss_pred HHHHHHHHhcccceeehhhhhhhHHHHHh---------------hc----cccccccccccchhhhhhhhcCcccccccc
Confidence 56666666666666555544322111110 00 011222233333334444444444433332
Q ss_pred chh----------------------hccCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCC
Q 011766 318 SAM----------------------RMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTT 375 (478)
Q Consensus 318 ~~~----------------------~~~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (478)
... ...+..+...+...|+.+.+++|....... .....+.. ..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~d~~~~~~~-~~~~~~~~---~~----------- 343 (426)
T 3mkv_A 279 TYDALASEGEKYGLPPESIAKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGEAQR-LQSDEFRI---LA----------- 343 (426)
T ss_dssp HHHHHHHHTTTTTCCHHHHTTHHHHHTTHHHHHHHHHHHTCCBCCCCCCCGGGGG-GTTHHHHH---HH-----------
T ss_pred chhhhhhhhhhccccccccccccccccccchhhHHhhhcCceeeeccCCcccccc-hHHHHHHH---HH-----------
Confidence 110 012234566788899999999998654211 11122211 11
Q ss_pred CCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEE
Q 011766 376 DPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMK 455 (478)
Q Consensus 376 ~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~ 455 (478)
.++|++|||+++|.|||+++|+++++|+|++||+|||||||.||+. |+.. ......+|.+||++||+|..
T Consensus 344 --~gls~~eal~~~T~~pA~~lgl~~~~Gsi~~G~~ADlvvlD~dPl~-----di~~---~~~~~~~v~~Vi~~G~vv~~ 413 (426)
T 3mkv_A 344 --EVLSPAEVIASATIVSAEVLGMQDKLGRIVPGAHADVLVVDGNPLK-----SVDC---LLGQGEHIPLVMKDGRLFVN 413 (426)
T ss_dssp --TTSCHHHHHHHTTHHHHHHTTCBTTBSSCCTTSBCCEEEESSCTTT-----CSTT---TCSSSTTCCEEEETTEEEEE
T ss_pred --hCCCHHHHHHHHHHHHHHHhCCCCCcceeCCCCcceEEEECCChHH-----hHHH---HhCCCCCccEEEECCEEEEC
Confidence 2599999999999999999999998999999999999999999553 2110 11234679999999997653
|
| >3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.8e-30 Score=263.01 Aligned_cols=332 Identities=20% Similarity=0.252 Sum_probs=201.0
Q ss_pred CccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhc
Q 011766 16 GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAK 95 (478)
Q Consensus 16 ~~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~ 95 (478)
..+++++|+|++|+++.. ..+..++|+|+||||++|++... ...+.++||++|++|+|||||+|+|+....
T Consensus 32 ~~~~dlli~n~~ivd~~~--~~~~~~dI~I~~G~I~~Vg~~~~-----~~~~~~vID~~G~~v~PG~ID~H~Hl~~~~-- 102 (608)
T 3nqb_A 32 DQRFDVLITGGTLVDVVT--GELRPADIGIVGALIASVHEPAS-----RRDAAQVIDAGGAYVSPGLIDTHMHIESSM-- 102 (608)
T ss_dssp SSCEEEEEESCEEECTTT--CCEEECEEEEETTEEEEEECTTS-----CCCEEEEEECTTSEEEECEEEEEECGGGGT--
T ss_pred CCCCCEEEECeEEEECCC--CeEEeeEEEEECCEEEEecCCCC-----CCCCCeEEeCCCCEEecCeEecccCccccc--
Confidence 456799999999997543 34567799999999999997531 113568999999999999999999994311
Q ss_pred cccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC--------HHHHHHHHHHhCCeEEEe
Q 011766 96 GIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH--------VSEMAKAVELLGLRACLV 167 (478)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~--------~~~~~~~~~~~g~~~~~~ 167 (478)
++.+ ...+.++.+|||++++.+... .....+.....+.+.+..
T Consensus 103 ----------------------~~~~-------~~~~~al~~GvTtvv~~p~~~~~v~g~~~~~~~l~~a~~~~~~v~~~ 153 (608)
T 3nqb_A 103 ----------------------ITPA-------AYAAAVVARGVTTIVWDPHEFGNVHGVDGVRWAAKAIENLPLRAILL 153 (608)
T ss_dssp ----------------------SCHH-------HHHHHHHTTTEEEEEECCHHHHHHHTHHHHHHHHHHHTTCSSEEEEE
T ss_pred ----------------------CCHH-------HHHHHHHhCCeEEEEcCCccccccCCHHHHHHHHHHhhhcCcEEEEe
Confidence 1111 123567999999999743211 112233334455555544
Q ss_pred cccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHc
Q 011766 168 QSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREF 247 (478)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 247 (478)
.+... |............. ..+..++++ ..+...+..+...... ....+.+.+.++.|++.
T Consensus 154 ~p~~~-----P~~~~~~~~g~~~~----------~~el~~l~~---~~~v~glgE~~~~~~v-~~~d~~l~~~l~~A~~~ 214 (608)
T 3nqb_A 154 APSCV-----PSAPGLERGGADFD----------AAILADLLS---WPEIGGIAEIMNMRGV-IERDPRMSGIVQAGLAA 214 (608)
T ss_dssp ECCCS-----SSSTTSCCCSCCCC----------HHHHHHHHT---STTEEEEEEECCHHHH-HTTCHHHHHHHHHHHHH
T ss_pred ccccC-----CCCCccccCcccCC----------HHHHHHHHh---ccCcceeeEeeccCCc-CCCcHHHHHHHHHHHHc
Confidence 32111 11000000000000 012233222 1111111111111111 13456678888999999
Q ss_pred CCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchhhccCCCc
Q 011766 248 KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAMRMLGFAP 327 (478)
Q Consensus 248 ~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 327 (478)
|.++.+|+.+.... ....+...+ ....|+....++.++++ +.|..+.+. .+... ....
T Consensus 215 g~pV~~Ha~~~~~~-------------~L~~~~~aG-----v~~~H~~~~~eea~e~l-~~G~~i~i~-gs~~~--~~~~ 272 (608)
T 3nqb_A 215 EKLVCGHARGLKNA-------------DLNAFMAAG-----VSSDHELVSGEDLMAKL-RAGLTIELR-GSHDH--LLPE 272 (608)
T ss_dssp TCEEEECCTTCCHH-------------HHHHHHHTT-----CCEECCCCSHHHHHHHH-HTTCEEEEE-SSSGG--GHHH
T ss_pred CCEEEEcCCCCCHH-------------HHHHHHHcC-----CCeeeccCCHHHHHHHH-HCCCEEEEe-ccccc--cHHH
Confidence 99999998754321 111222222 12378888776666665 568877765 22211 1122
Q ss_pred HHHHHH----CCCcEEEcCCCCCCCC---CcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 011766 328 IKEMLH----ADICVSLGTDGAPSNN---RMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWD 400 (478)
Q Consensus 328 ~~~~~~----~gv~v~~gsD~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~ 400 (478)
+..++. .|++++++||+..... ...+...++.+. +.+++++++++++|.|||+++|+
T Consensus 273 l~~~i~~~~~~g~~v~lgTD~~~p~~~~~~g~l~~~v~~~~---------------~~Gls~~eal~~aT~n~A~~lgl- 336 (608)
T 3nqb_A 273 FVAALNTLGHLPQTVTLCTDDVFPDDLLQGGGLDDVVRRLV---------------RYGLKPEWALRAATLNAAQRLGR- 336 (608)
T ss_dssp HHHHHHHHTSCCTTEEEECBSCCHHHHHHTCSHHHHHHHHH---------------HTTCCHHHHHHHHTHHHHHHHTC-
T ss_pred HHHHHHhHhhcCceEEEecCCCCCcchhhhcchHHHHHHHH---------------HcCCCHHHHHHHHHHHHHHHcCC-
Confidence 333333 7899999999632100 011122222211 12599999999999999999999
Q ss_pred CCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeee
Q 011766 401 NDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKIL 460 (478)
Q Consensus 401 ~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~ 460 (478)
+++|+|++|+.||||++|.- ...+|..||++|++|+++|+++
T Consensus 337 ~~~G~i~~G~~ADlvv~d~l------------------~~~~v~~v~~~G~~v~~~g~~~ 378 (608)
T 3nqb_A 337 SDLGLIAAGRRADIVVFEDL------------------NGFSARHVLASGRAVAEGGRML 378 (608)
T ss_dssp TTSSCCSTTSBCCEEEESCT------------------TTCCEEEEEETTEEEEETTEEC
T ss_pred CCCcCcCCCCCccEEEECCC------------------CCCcceEEEECCEEEEECCeEe
Confidence 46899999999999999961 1258999999999999999986
|
| >4gy7_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX; 1.49A {Canavalia ensiformis} PDB: 3la4_A* 4h9m_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-32 Score=281.00 Aligned_cols=343 Identities=14% Similarity=0.150 Sum_probs=185.4
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhh------h-hhhccCCCeEEeCCCCEEeeccccccccc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADI------L-QQFSQMADQIIDLQSQILLPGFVNTHVHT 89 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~------~-~~~~~~~~~viD~~G~~v~PGfID~H~H~ 89 (478)
...|++|+|++|+|++ . +.++||+|+||||++||+.... . .-..+++++|||++|++|+|||||+|+|+
T Consensus 335 ~~~DLVItNA~IVD~t---G-i~kADI~IkDGRIaAIGkagnpD~~dgV~pdl~ig~gtEVIDA~GkiVtPGfID~HvHl 410 (840)
T 4gy7_A 335 ISLDTVITNAVIIDYT---G-IIKADIGIKDGLIASIGKAGNPDIMNGVFSNMIIGANTEVIAGEGLIVTAGAIDCHVHY 410 (840)
T ss_dssp GSCSEEEEEEEEEETT---E-EEEEEEEEETTEEEEEECCBCTTTCSSCCTTSBCCTTCEEEECTTCEEEECEEEEEEEC
T ss_pred ccCCEEEeCeEEECCC---C-eEEeeEEEECCEEEEEeccCCcccccccccccccCCCCEEEECCCCEEccCeeeeccCC
Confidence 4579999999999753 2 3678999999999999964211 0 00123577999999999999999999998
Q ss_pred chhhhccccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCH------------HHHHHHH
Q 011766 90 SQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHV------------SEMAKAV 157 (478)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~------------~~~~~~~ 157 (478)
... . ...+++.+|+||+++.+.... .......
T Consensus 411 ~~P-----------------------------~-------~~~eALasGVTTvv~gGtgp~~~~~~~~~~~~~~~~~~~l 454 (840)
T 4gy7_A 411 ICP-----------------------------Q-------LVYEAISSGITTLVGGGTGPAAGTRATTCTPSPTQMRLML 454 (840)
T ss_dssp CCT-----------------------------H-------HHHHHHHHTEEEEEEECSSSCHHHHHSSCCCSHHHHHHHH
T ss_pred CCC-----------------------------C-------chHHHHHhhHHHHHhCCCceecCcccccccchHHHHHHHH
Confidence 321 0 012357789999987543211 1111111
Q ss_pred H---HhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCH
Q 011766 158 E---LLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATD 234 (478)
Q Consensus 158 ~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (478)
. ...+..... ......... ...+..+. +...++ ....+..++
T Consensus 455 ~a~~~~~vn~g~~---------------~~~~~~~~~------------~L~el~~a----Ga~g~K----~~~~~~~t~ 499 (840)
T 4gy7_A 455 QSTDDLPLNFGFT---------------GKGSSSKPD------------ELHEIIKA----GAMGLK----LHEDWGSTP 499 (840)
T ss_dssp HHTTTSSSEEEEE---------------EECCCSSSH------------HHHHHHHH----TCSEEE----EETTTCCCH
T ss_pred hhhhcceeEEEEe---------------CCCCcccHH------------HHHHhhhc----eeeEEE----eccccCCCH
Confidence 1 111111100 000000000 23332222 222233 233445678
Q ss_pred HHHHHHHHHHHHcCCceeEeccCChhh---hHHHhhhcCCC-----------CchHHHHhhhCCCCCCeeeeeeccC-C-
Q 011766 235 RLLLETRDMAREFKTGIHMHVAEIPYE---NQVVMDTRKVD-----------HGTVTFLDKIEFLQNNLLSAHTVWV-N- 298 (478)
Q Consensus 235 ~~l~~~~~~a~~~~~~v~~H~~~~~~~---~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~i~h~~~~-~- 298 (478)
+.+.++++.+++++..+.+|....... ........... ......+...+ ....+.+.... .
T Consensus 500 ~~i~~aL~~A~e~g~~V~ih~e~~~~~~~vee~laA~~g~~~h~~~~e~~~~~~A~dii~~~~---~a~~l~~~t~~~~~ 576 (840)
T 4gy7_A 500 AAIDNCLTIAEHHDIQINIHTDTLNEAGFVEHSIAAFKGRTIHTYHSEGAGGGHAPDIIKVCG---IKNVLPSSTNPTRP 576 (840)
T ss_dssp HHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHHHHTTCCEEETTTTSTTSCSTTTGGGGGG---CTTEEEEEESTTSS
T ss_pred HHHHHHHHHHHHhCCEEEEeccCcchhHHHHHHHHhhcCCcccceeccccccccchHHHHHhh---cccceeeEeeccch
Confidence 889999999999999999998543211 11111100000 00001111111 00111111110 0
Q ss_pred ------hhHHHHHHh-cCCeEEECccchhh------ccCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHH-HHHHHHHHh
Q 011766 299 ------HTEIGLLSR-AGVKVSHCPASAMR------MLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVD-EMYLASLIN 364 (478)
Q Consensus 299 ------~~~~~~~~~-~~~~~~~~p~~~~~------~~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~-~~~~~~~~~ 364 (478)
.+.+..... ..... ..+..... .........+.+.|+..+++||+.+......... .+.......
T Consensus 577 ~~~~~~~e~l~~~~~~~~l~~-~i~ed~~~~~s~~~~~~~a~~~ll~dlGvi~~isSD~~p~~~~~e~~~~~~~~a~~~~ 655 (840)
T 4gy7_A 577 LTSNTIDEHLDMLMVCHHLDR-EIPEDLAFAHSRIRKKTIAAEDVLNDIGAISIISSDSQAMGRVGEVISRTWQTADKMK 655 (840)
T ss_dssp CBTTHHHHHHHHHHHHTTCCT-TSHHHHHHHHHHSCHHHHHHHHHHHHTTSSCEEECCBTTTBCGGGHHHHHHHHHHHHH
T ss_pred hhhhhhhhhheeEEeeeccCc-cchhhhhhccCcCCccchhHHHHHHhCCCeEEEeccccccccccccchhhhcccccch
Confidence 111111110 00000 00000000 0112233456778999999999876543222221 111111111
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCee
Q 011766 365 KGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVV 444 (478)
Q Consensus 365 ~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~ 444 (478)
..+...........++++++|++++|.|||+++|+++++|+|++||+|||||||+..+ ..++.
T Consensus 656 ~~~g~~~~e~~~~~~Lsl~eAIr~aTiNPAraLGLddr~GSIEpGK~ADLVLfDPa~F-----------------GvKPe 718 (840)
T 4gy7_A 656 AQTGPLKCDSSDNDNFRIRRYIAKYTINPAIANGFSQYVGSVEVGKLADLVMWKPSFF-----------------GTKPE 718 (840)
T ss_dssp HHHCSCTTSCSSCCHHHHHHHHHTTTHHHHHHHTCTTTSSSSCTTSBCCEEEECGGGT-----------------TTCCS
T ss_pred hhcccchhhhhhcCCCCHHHHHHHHHHHHHHHhCCCCCccccCCCCcceEEEECchHc-----------------CCCCe
Confidence 1111111112234569999999999999999999999999999999999999998632 25899
Q ss_pred EEEEccEEEEE
Q 011766 445 SVMCNGQWVMK 455 (478)
Q Consensus 445 ~v~v~G~~v~~ 455 (478)
.|+++|++||.
T Consensus 719 ~Vik~G~Iv~~ 729 (840)
T 4gy7_A 719 MVIKGGMVAWA 729 (840)
T ss_dssp EEEETTEEEEE
T ss_pred EEEECCEEEEc
Confidence 99999999984
|
| >1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-30 Score=249.03 Aligned_cols=339 Identities=19% Similarity=0.189 Sum_probs=198.2
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhcccc
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIA 98 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~ 98 (478)
..++|+|++|++++ . ..+++|+|+||+|++|++..+.. . ..+.++||++|++|+|||||+|+|+....
T Consensus 8 ~~~~i~n~~v~~~~---~-~~~~~v~i~~g~I~~ig~~~~~~--~-~~~~~viD~~g~~v~PG~iD~H~H~~~~~----- 75 (390)
T 1onw_A 8 GFTLLQGAHLYAPE---D-RGICDVLVANGKIIAVASNIPSD--I-VPNCTVVDLSGQILCPGFIDQHVHLIGGG----- 75 (390)
T ss_dssp CCEEEESCEEESSS---E-EEECEEEEETTEEEEEETTCCTT--S-SSSCEEEECTTCEEEECEEEEEECTTCCB-----
T ss_pred ceEEEECcEEECCC---C-CccceEEEECCEEEEEecCcccC--C-CCCCeEEeCCCCEECcCeeEeeECccccC-----
Confidence 35789999999753 2 45679999999999999753210 1 12458999999999999999999984311
Q ss_pred CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCcc-----CH---HHHHHHHHHhCCeEEEeccc
Q 011766 99 DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQ-----HV---SEMAKAVELLGLRACLVQST 170 (478)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~-----~~---~~~~~~~~~~g~~~~~~~~~ 170 (478)
....+.. .+.+ ....+++++||||++++.+. .. ....+.....|++.+.....
T Consensus 76 ~~~~~~~------------~~~~-------~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~g~ 136 (390)
T 1onw_A 76 GEAGPTT------------RTPE-------VALSRLTEAGVTSVVGLLGTDSISRHPESLLAKTRALNEEGISAWMLTGA 136 (390)
T ss_dssp CTTSGGG------------BCCC-------CCHHHHHHTTEEEEEECCCSCCSSCCHHHHHHHHHHHHHHTSEEEEEEEC
T ss_pred ccccccc------------cCHH-------HHHHHHHHCCeeEEecCCCcccccCcHHHHHHHHHHHHhcCCceEEeccc
Confidence 0001100 0111 12345789999999997532 12 22344455667765433221
Q ss_pred ccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCC-
Q 011766 171 MDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKT- 249 (478)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~- 249 (478)
+.. +... ... ......... ....+ .+..+.++..+..+.+.+.++.+.++..+.
T Consensus 137 ~~~----~~~~-------~~~------------~~~~~~~~~-~~~~g-~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 191 (390)
T 1onw_A 137 YHV----PSRT-------ITG------------SVEKDVAII-DRVIG-VKCAISDHRSAAPDVYHLANMAAESRVGGLL 191 (390)
T ss_dssp SCS----SCCC-------SSS------------CHHHHHHHC-TTEEE-EEEEESSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred cCC----Cchh-------hhh------------hhcchhhhH-HHhhc-ceeeecCCCCCCCCHHHHHHHHHHHhhhhhh
Confidence 110 1000 000 111111111 11011 134445555556788888888877766543
Q ss_pred -----ceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCe-eeeeeccCCh----hHHHHHHhcCCeEEECccch
Q 011766 250 -----GIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNL-LSAHTVWVNH----TEIGLLSRAGVKVSHCPASA 319 (478)
Q Consensus 250 -----~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~i~h~~~~~~----~~~~~~~~~~~~~~~~p~~~ 319 (478)
.+++|..+.....+.... .+ ..+...... ...|. +..+ +.++.+++.+.....++...
T Consensus 192 ~~~~g~~~~h~~~~~~~~~~~~~----------~~-~~g~~~v~~l~~~h~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (390)
T 1onw_A 192 GGKPGVTVFHMGDSKKALQPIYD----------LL-ENCDVPISKLLPTHV-NRNVPLFEQALEFARKGGTIDITSSIDE 259 (390)
T ss_dssp HTSCCEEEEEECSCTTTTHHHHH----------HH-HTCCCCGGGEEEECG-GGSHHHHHHHHHHHHTTCCEEEETTCCS
T ss_pred hccCceEEEEeCCCHHHHHHHHH----------HH-hccCCceEEeecccc-ccCHHHHHHHHHHHhcCCccccccccCC
Confidence 367787543332222111 11 111111111 11343 2233 34455555554444443221
Q ss_pred hhccCCCcHHHHHHCCCc---EEEcCCCCCCCCC---------------cCHHHHHHHHHHHhcccccccCCCCCCCCCC
Q 011766 320 MRMLGFAPIKEMLHADIC---VSLGTDGAPSNNR---------------MSIVDEMYLASLINKGREVFANGTTDPAALP 381 (478)
Q Consensus 320 ~~~~~~~~~~~~~~~gv~---v~~gsD~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 381 (478)
. .....+++.+++.|++ ++++||+.+.... ..+...++... . ..++|
T Consensus 260 ~-~~~~~~l~~~~~~g~~~d~i~l~TD~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~------------~~~~~ 324 (390)
T 1onw_A 260 P-VAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFDDEGNLTHIGVAGFETLLETVQVLV--K------------DYDFS 324 (390)
T ss_dssp S-SCHHHHHHHHHHTTCCGGGEEEECCBTCC-------------CCCCSHHHHHHHHHHH--H------------HHCCC
T ss_pred C-CcCHHHHHHHHHcCCCccceEEEccCCCCCcccCCccccccccCCCHHHHHHHHHHHH--H------------HcCCC
Confidence 1 1334578889999974 8999998543110 11222222111 0 12599
Q ss_pred HHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeec
Q 011766 382 AETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILL 461 (478)
Q Consensus 382 ~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~ 461 (478)
++++++++|.|||+++|++ ++|+|++|++|||||+|.+ ..|..||++|++|+++|+++.
T Consensus 325 ~~~~~~~~t~npA~~~gl~-~~G~i~~G~~ADlvv~d~~--------------------~~v~~v~~~G~~v~~~g~~~~ 383 (390)
T 1onw_A 325 ISDALRPLTSSVAGFLNLT-GKGEILPGNDADLLVMTPE--------------------LRIEQVYARGKLMVKDGKACV 383 (390)
T ss_dssp HHHHHGGGTHHHHHHTTCT-TCSSCCTTSBCCEEEECTT--------------------CCEEEEEETTEEEEETTEESS
T ss_pred HHHHHHHHhHHHHHHhCCC-CCcccCCCCcCCEEEEcCC--------------------CcEEEEEECCEEEEECCeEcc
Confidence 9999999999999999994 5799999999999999986 378999999999999999874
|
| >1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-29 Score=240.02 Aligned_cols=316 Identities=14% Similarity=0.145 Sum_probs=182.2
Q ss_pred ecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccchhhhccccCCCCchHHhhhccccccCCC
Q 011766 39 RNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNM 118 (478)
Q Consensus 39 ~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (478)
.+++|+|+||+|++|++ . + || +|++|+|||||+|+|+.+.... .. .
T Consensus 28 ~~~~V~I~~g~I~~vg~-----------~-~-iD-~g~~v~PGlID~H~H~~~~~~~-------------------~~-~ 73 (376)
T 1o12_A 28 FTGDVEIEEGKIVKVEK-----------R-E-CI-PRGVLMPGFVDPHIHGVVGADT-------------------MN-C 73 (376)
T ss_dssp EEEEEEEETTEEEEEEE-----------C-C-SC-CSSEEEECEEEEEECEETTEET-------------------TT-T
T ss_pred cCceEEEECCEEEEeCC-----------C-c-cC-CCCEEccCeEEEeecCCCCCCC-------------------Ch-h
Confidence 57799999999999975 1 4 89 9999999999999999542210 00 0
Q ss_pred ChHHHHHHHHHHHHHHHhcCcceeecCCccCH--------HHHHHHHHH-hCCeEEEecccccCCCCCCCcccccCCccc
Q 011766 119 TEEDSYISTLLCGIELIHSGVTCFAEAGGQHV--------SEMAKAVEL-LGLRACLVQSTMDCGEGLPASWAVRTTDDC 189 (478)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~--------~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (478)
+ ......+++++||||+++++.... ....+..+. .|.+... ....+..+............
T Consensus 74 ~-------l~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~g---~~~~g~~~~~~~~g~~~~~~ 143 (376)
T 1o12_A 74 D-------FSEMEEFLYSQGVTTFLATTVSTSLEKMKEILRKARDYILENPSTSLLG---VHLEGPYISKEKKGAHSEKH 143 (376)
T ss_dssp C-------HHHHHHHHHTTTEEEEEEECCSCCHHHHHHHHHHHHHHHHHCTTCSEEE---EEEECSSSCGGGCTTSCTTT
T ss_pred h-------HHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHhhccCCCceEE---EEEEcCcCCcccCCCCCHHH
Confidence 0 122456789999999999764321 122233333 3522211 11111111111111111111
Q ss_pred CCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeE-eccCChhhhHHHhhh
Q 011766 190 IQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHM-HVAEIPYENQVVMDT 268 (478)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~-H~~~~~~~~~~~~~~ 268 (478)
+. ....+.++++ ........+.+..... +++++|++.|+++++ |+.+...+.......
T Consensus 144 ~~-----------~~~~~~~~~~---~~~~~~~~~~pe~~~~-------~~i~~A~~~g~~v~igH~~~~~~~i~~a~~~ 202 (376)
T 1o12_A 144 IR-----------PPSERELSEI---DSPAKMLTFAPEIESS-------ELLLRLVKRDIVLSAGHSIATFEEFMKFYKE 202 (376)
T ss_dssp CC-----------CCCHHHHTTC---CTTEEEEEECTTSTTG-------GGGGGGGGGTCEEEECSBCCCHHHHHHHHTT
T ss_pred hc-----------CCCHHHHHHh---hCCeEEEEEccCCccH-------HHHHHHHHCCCEEEeecCccCHHHHHHHHHC
Confidence 11 0113334443 1122222233322111 467889999999999 987654443322221
Q ss_pred --cCCCC-----chHH-----HHhhhCCCCCCe---eeeeeccCChhHHHHHHhc-CCeEEECccchhhc-cCCCcHHHH
Q 011766 269 --RKVDH-----GTVT-----FLDKIEFLQNNL---LSAHTVWVNHTEIGLLSRA-GVKVSHCPASAMRM-LGFAPIKEM 331 (478)
Q Consensus 269 --~~~~~-----~~~~-----~l~~~~~~~~~~---~i~h~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~-~~~~~~~~~ 331 (478)
....| .... .+... ....+. ++.|+.++++++++.+.+. +.. ..++.++... .+.++.. +
T Consensus 203 G~~~itH~~~~~~~~~~~~~g~~~~~-l~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~-~~~~~sd~~~~~g~~~g~-~ 279 (376)
T 1o12_A 203 GVKRITHFPNGLKPLHHREIGITGAG-LLLDDVKLELICDGVHLSREMVKLVYKVKKAN-GIVLVTDSISAAGLKDGT-T 279 (376)
T ss_dssp TCCEESSTTTTBCCCCSSCCHHHHHH-HHCTTCEEEEECSSSSSCHHHHHHHHHHHTGG-GEEEECCBCTTTTSCSCE-E
T ss_pred CCCeEEecccCcCChhhcccchhhhh-hcCCcceEEEeCCCcCcCHHHHHHHHhhCCCC-CEEEecCchhhcCCCCee-E
Confidence 00000 0000 11000 001233 5689999999999998877 553 2333333322 2333322 2
Q ss_pred HHCCCcEEE--c----CCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccc
Q 011766 332 LHADICVSL--G----TDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGS 405 (478)
Q Consensus 332 ~~~gv~v~~--g----sD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~ 405 (478)
...|+++.+ + +|....+...+++.+|+.+... .++|++++++++|.|||+++|++++ |+
T Consensus 280 ~~~g~~~~~~~g~~~~~~g~~~g~~~~l~~~l~~~~~~--------------~~~~~~~~l~~~T~~~A~~lgl~~~-G~ 344 (376)
T 1o12_A 280 TLGDLVVKVKDGVPRLEDGTLAGSTLFFSQAVKNFRKF--------------TGCSITELAKVSSYNSCVELGLDDR-GR 344 (376)
T ss_dssp ESSSSEEEEETTEEECTTSCBCCBCCCHHHHHHHHHHH--------------HCCCHHHHHHHHTHHHHHHTTCTTS-SC
T ss_pred EECCeEEEEeCCeEEeCCCcccccccCHHHHHHHHHHH--------------cCCCHHHHHHHHHHHHHHHhCCCCC-cc
Confidence 223444444 2 3433333556788888765432 1599999999999999999999765 99
Q ss_pred cccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECC
Q 011766 406 LEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNK 457 (478)
Q Consensus 406 l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g 457 (478)
|++|++|||+++|.+ .+|..||++|++|++++
T Consensus 345 i~~G~~ADlv~~d~~--------------------~~v~~v~~~G~~v~~~~ 376 (376)
T 1o12_A 345 IAEGTRADLVLLDED--------------------LNVVMTIKEGEVVFRSR 376 (376)
T ss_dssp CSTTSBCCEEEECTT--------------------CCEEEEEETTEEEEEC-
T ss_pred CCCCCcCCEEEECCC--------------------CCEEEEEECCEEEeecC
Confidence 999999999999986 58999999999999875
|
| >4ep8_C Urease subunit alpha; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1ef2_A* 4epb_C* 4epd_C* 4epe_C* 1ejx_C* 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1a5k_C 1ejv_C* 1ejt_C* 1eju_C* 1ejs_C* 1a5m_C 1a5n_C 1ejr_C* 1a5l_C 1a5o_C 1fwa_C* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=247.94 Aligned_cols=112 Identities=20% Similarity=0.218 Sum_probs=80.2
Q ss_pred cHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHH-HHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccc
Q 011766 327 PIKEMLHADICVSLGTDGAPSNNRMSIVDEMY-LASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGS 405 (478)
Q Consensus 327 ~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~ 405 (478)
....+++.|....+++|+.+............ ...........+........++|++++++++|.|||++||+++++|+
T Consensus 343 ~~~~l~~~G~~~~i~sD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gls~~eal~~aTiNPAralGL~d~iGS 422 (566)
T 4ep8_C 343 AEDVLHDLGAFSLTSSDSQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHEVGS 422 (566)
T ss_dssp HHHHHHHHTSSCEECCCTTSSSCTTCHHHHHHHHHHHHHHHHCSCTTCCSSSCHHHHHHHHGGGTHHHHHHTTCTTTSSS
T ss_pred HHHHHHhCCCcceEeecccccccccccccccCCCCchHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhCCCCCCcC
Confidence 34466788999999999977654433332111 11111111111111122445799999999999999999999999999
Q ss_pred cccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEE
Q 011766 406 LEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMK 455 (478)
Q Consensus 406 l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~ 455 (478)
|++||+|||||||++.+ ..++.+|+++|.+||-
T Consensus 423 IevGK~ADLVL~Dp~~f-----------------~vkP~~v~~~G~iv~a 455 (566)
T 4ep8_C 423 IEVGKLADLVVWSPAFF-----------------GVKPATVIKGGMIAIA 455 (566)
T ss_dssp SCTTSBCCEEEECGGGT-----------------TTSCSEEEETTEEEEE
T ss_pred CCCCCCCCEEEECcccc-----------------CCCeeEEeeCCEEEEc
Confidence 99999999999999744 2589999999999994
|
| >2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical ST genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A | Back alignment and structure |
|---|
Probab=99.64 E-value=7.3e-15 Score=139.72 Aligned_cols=242 Identities=17% Similarity=0.122 Sum_probs=163.3
Q ss_pred CCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceee---cC------CccCHH--------HHHHHHHHh--C
Q 011766 101 VDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFA---EA------GGQHVS--------EMAKAVELL--G 161 (478)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~---~~------~~~~~~--------~~~~~~~~~--g 161 (478)
.++.+|+....++..-..+.++.+..+...+.++++.|||++. ++ .+.... .+.+..+.. |
T Consensus 91 ~~L~~~l~~~~~~~~~~~t~ed~~~~a~~~l~e~~~~GV~y~E~r~dp~~~~~~~gl~~~~~~~a~~~~~~~a~~~~~~g 170 (371)
T 2pgf_A 91 KSLGEFVEKAIKVADIFHDYEVIEDLAKHAVFNKYKEGVVLMEFRYSPTFVAFKYNLDIELIHQAIVKGIKEVVELLDHK 170 (371)
T ss_dssp SCHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHHTEEEEEEEECHHHHHTTTTCCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCEEEEEEECcccccccCCCCHHHHHHHHHHHHHHHHHHccCC
Confidence 4566777776666666678888888888899999999999972 21 111111 222233345 7
Q ss_pred CeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHHH
Q 011766 162 LRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETR 241 (478)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (478)
++..+..+.... .+. +... +..+...+ . ....+ .+++.+.+.. ++.+..++
T Consensus 171 i~~~li~~~~r~---~~~--------~~~~------------~~~~~a~~-~--~~~vv--g~dl~g~e~~-~~~~~~~~ 221 (371)
T 2pgf_A 171 IHVALMCIGDTG---HEA--------ANIK------------ASADFCLK-H--KADFV--GFDHGGHEVD-LKEYKEIF 221 (371)
T ss_dssp SEEEEEEEEEES---STT--------CCHH------------HHHHHHHH-T--TTTEE--EEEEEESCCC-GGGGHHHH
T ss_pred CEEEEEEEecCC---CCH--------HHHH------------HHHHHHHh-C--CCCEE--EEecCCCccc-HHHHHHHH
Confidence 766544433321 111 0001 22222222 1 12222 2555555555 77889999
Q ss_pred HHHHHcCCceeEeccCChhhhHHHhhhcCCCCch-HHHHhhhCCCCCCeeeeeeccCChhH--HHHHHhcCCeEEECccc
Q 011766 242 DMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGT-VTFLDKIEFLQNNLLSAHTVWVNHTE--IGLLSRAGVKVSHCPAS 318 (478)
Q Consensus 242 ~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~i~h~~~~~~~~--~~~~~~~~~~~~~~p~~ 318 (478)
+.|++.|+++++|+.+.... .+ .........++.. .+.||.++++++ ++++++.++.+++||.+
T Consensus 222 ~~A~~~gl~~~~HagE~~~~------------~~~~~i~~al~~lg~~-ri~Hgv~l~~~~~l~~~l~~~~i~v~~cP~S 288 (371)
T 2pgf_A 222 DYVRESGVPLSVHAGEDVTL------------PNLNTLYSAIQVLKVE-RIGHGIRVAESQELIDMVKEKNILLEVCPIS 288 (371)
T ss_dssp HHHHHTTCCBEEEESCCTTS------------SSSHHHHHHHHTSCCS-EEEECGGGGGCHHHHHHHHHTTCEEEECHHH
T ss_pred HHHHHcCCcEEEeeCCCCCC------------CchHHHHHHHhccCCC-EEecchhccccHHHHHHHHHcCCeEEECcch
Confidence 99999999999999886310 01 2223334444444 589999997765 99999999999999999
Q ss_pred hhhcc-----CCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHH
Q 011766 319 AMRML-----GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATING 393 (478)
Q Consensus 319 ~~~~~-----~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~p 393 (478)
|+... ...|+++++++|++|++|||.+...+ .+++.+++.+.... +++.+++ +.+|.|+
T Consensus 289 N~~l~~~~~~~~~pi~~ll~~Gv~V~lgTD~~~~~~-~~l~~e~~~a~~~~--------------~l~~~~l-~~lt~ns 352 (371)
T 2pgf_A 289 NVLLKNAKSMDTHPIRQLYDAGVKVSVNSDDPGMFL-TNINDDYEELYTHL--------------NFTLEDF-MKMNEWA 352 (371)
T ss_dssp HHHTTSSSCGGGCTHHHHHHTTCEEEECCBCHHHHT-CCHHHHHHHHHHHH--------------CCCHHHH-HHHHHHH
T ss_pred hHHhCCCCccccChHHHHHHCCCeEEEeCCCCcccC-CCHHHHHHHHHHHh--------------CCCHHHH-HHHHHHH
Confidence 98763 23699999999999999999865433 58999998776542 4899996 8889999
Q ss_pred HHHcCCC
Q 011766 394 AKSVLWD 400 (478)
Q Consensus 394 A~~lgl~ 400 (478)
++...++
T Consensus 353 ~~asf~~ 359 (371)
T 2pgf_A 353 LEKSFMD 359 (371)
T ss_dssp HHHCCSC
T ss_pred HHHHcCC
Confidence 9999885
|
| >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-15 Score=110.01 Aligned_cols=70 Identities=24% Similarity=0.378 Sum_probs=55.8
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccch
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~ 91 (478)
+.+++|+|++|+++++. ...+++|+|+||+|++|++..+... ...+.++||++|++|+|||||+|+|+.+
T Consensus 3 ~~~~li~n~~i~~~~~~--~~~~~~i~I~~g~I~~ig~~~~~~~--~~~~~~viD~~g~~v~PG~ID~H~H~~~ 72 (81)
T 3ggm_A 3 VPDMILYNGKITTLDPS--QPEVSAIAITDGLITAVGGDELLNS--ATEKTKKIDLKRKRAIPGLNDSHIHVIR 72 (81)
T ss_dssp CCSEEEESSEEECSCTT--CSEESEEEEETTEEEEEESGGGGGG--CCTTCEEEECTTCEEEECCCCTTEEEEC
T ss_pred cCCEEEECCEEEeCCCC--CccccEEEEECCEEEEEeCchHhcc--cCCCCEEEECCCCEEeeCeEeeeeCCCC
Confidence 56789999999987643 2346799999999999998654321 1235689999999999999999999954
|
| >3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu genomics, center for structural genomics of infectious DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-13 Score=129.53 Aligned_cols=161 Identities=11% Similarity=0.079 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHH-HHhhhC-CCCCCeeeeeeccCChhHHHHHHh-cC
Q 011766 233 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVT-FLDKIE-FLQNNLLSAHTVWVNHTEIGLLSR-AG 309 (478)
Q Consensus 233 ~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~~~~~~~i~h~~~~~~~~~~~~~~-~~ 309 (478)
+.+.+.++++.+++.|.++.+|+.+....... ....+. .+.... ..+.+..+.|.+ +.+.++.+++ ..
T Consensus 134 ~~~~l~~~l~~~~~~g~~v~vHaEd~~~i~~~-------E~~ai~r~~~la~~~~g~~lhi~HvS--t~~~v~~I~~A~~ 204 (359)
T 3pnu_A 134 DIEYLKPTLEAMSDLNIPLLVHGETNDFVMDR-------ESNFAKIYEKLAKHFPRLKIVMEHIT--TKTLCELLKDYEN 204 (359)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECCCCSSCGGGT-------TGGGHHHHHHHHHHCTTSCEEECSCC--SHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCchHhHHH-------HHHHHHHHHHHHHHcCCCcEEEEecC--cHHHHHHHHhcCC
Confidence 67889999999999999999999765421110 001121 122222 235566666666 4566776666 47
Q ss_pred CeEEECccchhhc-------------cCCCc---------HHHHHHCCCcE-EEcCCCCCCCCCc----------C-HHH
Q 011766 310 VKVSHCPASAMRM-------------LGFAP---------IKEMLHADICV-SLGTDGAPSNNRM----------S-IVD 355 (478)
Q Consensus 310 ~~~~~~p~~~~~~-------------~~~~~---------~~~~~~~gv~v-~~gsD~~~~~~~~----------~-~~~ 355 (478)
+.+.+||.+.... .-.+| +.+.+..|... +++||+.|+.... . ...
T Consensus 205 VtaEv~phhL~lt~~~~~~~~~~~~~k~~PPLR~~~dr~aL~~al~dG~id~~iaTDHaPh~~~eK~~~~g~~Gi~~~~~ 284 (359)
T 3pnu_A 205 LYATITLHHLIITLDDVIGGKMNPHLFCKPIAKRYEDKEALCELAFSGYEKVMFGSDSAPHPKDTKECCGCAAGVFSAPV 284 (359)
T ss_dssp EEEEECSGGGTCCHHHHHTSSCCGGGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCBC------CCCSCBCCGGG
T ss_pred ceEEEechhhEEcHHHhcCcCCCCceEEcCCCCCHHHHHHHHHHHhcCCCCEEEecCCCCCCHHHhCCCCCCCChhhHHH
Confidence 7889999853210 11233 33567789777 8999998763211 0 000
Q ss_pred HHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCC
Q 011766 356 EMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSW 422 (478)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~ 422 (478)
.+........ ++++++++++.+|.|||+++||..++ | |||+||| .++
T Consensus 285 ~L~l~~~~~~------------~~~~l~~lv~~~s~nPAki~gL~~~~-----G--Adlvl~d-~~~ 331 (359)
T 3pnu_A 285 ILPVLAELFK------------QNSSEENLQKFLSDNTCKIYDLKFKE-----D--KILTLEE-KEW 331 (359)
T ss_dssp HHHHHHHHHH------------HHSCHHHHHHHHTHHHHHHHTCCCSS-----C--CEEEEEC-CCE
T ss_pred HHHHHHHHHh------------hcCCHHHHHHHHHHhHHHHhCCCCCC-----C--CeEEEEe-cCE
Confidence 0001110000 12689999999999999999996443 4 9999999 433
|
| >3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=8.8e-13 Score=122.22 Aligned_cols=240 Identities=17% Similarity=0.130 Sum_probs=151.0
Q ss_pred CchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecC--------CccCHHH--------HHHHHHHhCCeEE
Q 011766 102 DLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEA--------GGQHVSE--------MAKAVELLGLRAC 165 (478)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~--------~~~~~~~--------~~~~~~~~g~~~~ 165 (478)
++.+++..+.+...-..+.++.+..++....++.+.||+.+--. .+..... ..+.....|+...
T Consensus 55 ~l~~fl~~~~~~~~vl~t~ed~~~~a~~~~~~~~~dgV~y~Eir~~P~~~~~~gl~~~~~v~~v~~~~~~a~~~~gi~~~ 134 (326)
T 3pao_A 55 NLQEFLDLYYAGADVLRTEQDFYDLTWAYLQKCKAQNVVHVEPFFDPQTHTDRGIPFEVVLAGIRAALRDGEKLLGIRHG 134 (326)
T ss_dssp SHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHTTEEEECCEECHHHHHTTTCCHHHHHHHHHHHHHHHHHHHCCEEC
T ss_pred CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCeEEEEEEChHHhccCCCCHHHHHHHHHHHHHHHHhhCceEEE
Confidence 44555655555444445666767777778899999999986221 1112221 1222334565443
Q ss_pred EecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEecccc-ccCCHHHHHHHHHHH
Q 011766 166 LVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQI-MNATDRLLLETRDMA 244 (478)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~a 244 (478)
+-.+.... .++ +... +..+...++.. ..+. ++..+. ...+++.+..+++.|
T Consensus 135 lI~~~~R~---~~~--------~~a~------------~~~~~a~~~~~---~vvG--~dL~g~E~~~~~~~~~~~~~~A 186 (326)
T 3pao_A 135 LILSFLRH---LSE--------EQAQ------------KTLDQALPFRD---AFIA--VGLDSSEVGHPPSKFQRVFDRA 186 (326)
T ss_dssp CEEEEETT---SCH--------HHHH------------HHHHHHGGGGG---GCSE--EEEESCCTTCCGGGGHHHHHHH
T ss_pred EEEEeCCC---CCH--------HHHH------------HHHHHHhhccc---ccee--eCCCCCCCCCCHHHHHHHHHHH
Confidence 32222210 110 0000 22222223322 2222 222222 234567788999999
Q ss_pred HHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCC--hhHHHHHHhcCCeEEECccchhhc
Q 011766 245 REFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN--HTEIGLLSRAGVKVSHCPASAMRM 322 (478)
Q Consensus 245 ~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~ 322 (478)
++.|+++++|+.+.... ..+.+....++.. .+.||.++. ++.++++++.++.+++||.+|+..
T Consensus 187 ~~~gl~~~~HagE~~~~--------------~~i~~al~~lg~~-rigHgv~l~~d~~l~~~l~~~~i~le~cP~SN~~l 251 (326)
T 3pao_A 187 RSEGFLTVAHAGEEGPP--------------EYIWEALDLLKVE-RIDHGVRAFEDERLMRRLIDEQIPLTVCPLSNTKL 251 (326)
T ss_dssp HHTTCEECEEESSSSCH--------------HHHHHHHHTTCCS-SEEECGGGGGCHHHHHHHHHHTCCEEECHHHHHHT
T ss_pred HHcCCceeeecCCCCCH--------------HHHHHHHhcCCCc-eeeeeeeecccHHHHHHHHHcCCeEEECchhHHHh
Confidence 99999999999886432 1122223223332 379999998 679999999999999999999877
Q ss_pred c-----CCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHc
Q 011766 323 L-----GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSV 397 (478)
Q Consensus 323 ~-----~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~l 397 (478)
. +..|+++|+++|++++++||.+...++ ++..+++.+.... +++.++ ++.++.|+++..
T Consensus 252 ~~~~~~~~hPi~~ll~~Gv~V~l~TDdp~~~~~-~l~~e~~~a~~~~--------------~l~~~~-l~~l~~nsi~~s 315 (326)
T 3pao_A 252 CVFDDMSQHTILDMLERGVKVTVNSDDPAYFGG-YVTENFHALQQSL--------------GMTEEQ-ARRLAQNSLDAR 315 (326)
T ss_dssp TSSSSGGGCCHHHHHHHTCCEEECCBSHHHHTC-CHHHHHHHHHHHH--------------CCCHHH-HHHHHHHHHHTC
T ss_pred CCCCCcccChHHHHHHCCCeEEEeCCCcccCCC-CHHHHHHHHHHHc--------------CCCHHH-HHHHHHHHHHHH
Confidence 3 457999999999999999998655444 8888888776542 489999 578889999987
Q ss_pred CCC
Q 011766 398 LWD 400 (478)
Q Consensus 398 gl~ 400 (478)
.++
T Consensus 316 f~~ 318 (326)
T 3pao_A 316 LVK 318 (326)
T ss_dssp C--
T ss_pred Hhc
Confidence 764
|
| >3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=99.47 E-value=5.5e-12 Score=117.62 Aligned_cols=139 Identities=15% Similarity=0.129 Sum_probs=109.5
Q ss_pred cCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCC--hhHHHHHHhc
Q 011766 231 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN--HTEIGLLSRA 308 (478)
Q Consensus 231 ~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~--~~~~~~~~~~ 308 (478)
..+++.+..+++.|++.|+++++|+.+.... ..+.+....++.. .+.||.++. ++.++++++.
T Consensus 176 ~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~--------------~~i~~al~~lg~~-rIgHgv~l~~d~~l~~~l~~~ 240 (343)
T 3rys_A 176 GNPPSKFERLYQRAAEAGLRRIAHAGEEGPA--------------SYITEALDVLHVE-RIDHGIRCMEDTDVVQRLVAE 240 (343)
T ss_dssp TCCGGGGHHHHHHHHHTTCEEEEEESSSSCH--------------HHHHHHHHTSCCS-EEEECGGGGGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEeeCCCCCH--------------HHHHHHHhcCCcc-eeeeeeeecCChHHHHHHHhc
Confidence 4466778899999999999999999886432 1222333333332 489999986 5899999999
Q ss_pred CCeEEECccchhhcc-----CCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHH
Q 011766 309 GVKVSHCPASAMRML-----GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAE 383 (478)
Q Consensus 309 ~~~~~~~p~~~~~~~-----~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~ 383 (478)
++.+++||.+|.... ...|+++|+++|++++++||.+...++ ++..+++.+.... +++.+
T Consensus 241 ~i~le~cP~SN~~l~~~~~~~~hPi~~ll~~Gv~V~l~TDdp~~~~~-~l~~E~~~a~~~~--------------~l~~~ 305 (343)
T 3rys_A 241 QVPLTVCPLSNVRLRAVDKLADHPLPEMLAIGLNVCVNSDDPAYFGG-YVDDNFEQLVKVL--------------EFSVP 305 (343)
T ss_dssp TCCEEECHHHHHHTTSSSCGGGCSHHHHHHTTCCEEECCBSTTTTTC-CHHHHHHHHHHHH--------------CCCHH
T ss_pred CCCeeEchhHHHHhCCCCCcccchHHHHHHCCCeEEEeCCCccccCC-CHHHHHHHHHHHc--------------CCCHH
Confidence 999999999998773 246999999999999999998776555 8999988776542 48999
Q ss_pred HHHHHHhHHHHHHcCCC
Q 011766 384 TVLRMATINGAKSVLWD 400 (478)
Q Consensus 384 ~al~~~T~~pA~~lgl~ 400 (478)
+ ++.++.|+++...++
T Consensus 306 ~-l~~l~~nsi~~sf~~ 321 (343)
T 3rys_A 306 E-QATLAANSIRSSFAS 321 (343)
T ss_dssp H-HHHHHHHHHHHSSSC
T ss_pred H-HHHHHHHHHHHHCCC
Confidence 8 577789999998874
|
| >2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD; 1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A* 1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A* 3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.5e-12 Score=119.94 Aligned_cols=157 Identities=9% Similarity=0.099 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHh-hhcCCCCchHHHH--hhhCCCCCCeeeeeeccCChhHHHHHHhc
Q 011766 232 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVM-DTRKVDHGTVTFL--DKIEFLQNNLLSAHTVWVNHTEIGLLSRA 308 (478)
Q Consensus 232 ~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~-~~~~~~~~~~~~l--~~~~~~~~~~~i~h~~~~~~~~~~~~~~~ 308 (478)
.+.+.+.++++.+++.+.++.+|+.+......... +... ....+ ......+.+..+.|.. +.+.++.+++.
T Consensus 117 ~~~~~l~~~~~~~~~~~~~v~vH~ed~~~~~~~~~~E~~~----~~~~i~~~la~~~~~~~hi~Hvs--t~~~~~~i~~a 190 (347)
T 2z26_A 117 TSVDAIMPVLERMEKIGMPLLVHGEVTHADIDIFDREARF----IESVMEPLRQRLTALKVVFEHIT--TKDAADYVRDG 190 (347)
T ss_dssp SCGGGGHHHHHHHHHHTCCEEECCCCCCTTSCGGGHHHHH----HHHTHHHHHHHSTTCCEEECSCC--SHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHhCCEEEEEecCCccccCHHHHHHHH----HHHHHHHHHHhhcCCcEEEEECC--cHHHHHHHHHh
Confidence 35677888999999999999999975431100000 0000 00111 1122334555555554 35666666654
Q ss_pred --CCeEEECccchhh-------------ccCCCc---------HHHHHHCCCcE-EEcCCCCCCCCC----------c-C
Q 011766 309 --GVKVSHCPASAMR-------------MLGFAP---------IKEMLHADICV-SLGTDGAPSNNR----------M-S 352 (478)
Q Consensus 309 --~~~~~~~p~~~~~-------------~~~~~~---------~~~~~~~gv~v-~~gsD~~~~~~~----------~-~ 352 (478)
++.+.+||..... ..-.+| +.+.+..|... +++||+.|+... . .
T Consensus 191 k~~Vt~e~~ph~L~l~~~~~~~~~~~~~~k~~PPLR~~~d~~aL~~~l~~G~id~~i~SDhaP~~~~~K~~~~g~~Gi~~ 270 (347)
T 2z26_A 191 NERLAATITPQHLMFNRNHMLVGGVRPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCAGCFN 270 (347)
T ss_dssp CTTEEEEECHHHHHCCHHHHHTTSBCGGGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCCHHHHSSSSBCCCCCC
T ss_pred CCCceEeecchHheecHHHhcCcCCCccEEEeCCCCCHHHHHHHHHHHhcCCCCeEEecCCCCCCHHHhcCCCCCCCcCc
Confidence 4677888875321 011222 34566778776 899999765310 1 0
Q ss_pred HHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCcccc
Q 011766 353 IVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSL 406 (478)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l 406 (478)
....+...+.... .++|++++++++|.|||+++|+.+++|+|
T Consensus 271 ~e~~l~l~~~~~~------------~~~sl~~~v~~~s~nPAki~gl~~~kG~i 312 (347)
T 2z26_A 271 APTALGSYATVFE------------EMNALQHFEAFCSVNGPQFYGLPVNDTFI 312 (347)
T ss_dssp TTTHHHHHHHHHH------------HTTCGGGHHHHHHTHHHHHHTCCCCCCEE
T ss_pred HHHHHHHHHHHhh------------cCCCHHHHHHHHhHhHHHHhCCCCCCCeE
Confidence 0001111110000 14799999999999999999996557875
|
| >3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ... | Back alignment and structure |
|---|
Probab=99.26 E-value=8e-10 Score=103.83 Aligned_cols=135 Identities=14% Similarity=0.116 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCC--hhHHHHHHhcCCeE
Q 011766 235 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN--HTEIGLLSRAGVKV 312 (478)
Q Consensus 235 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~--~~~~~~~~~~~~~~ 312 (478)
+....+++.|++.|+++++|+.+..... ...+....++.. .|.|+.++. ++.++++++.++.+
T Consensus 192 ~~f~~~f~~A~~~gl~~~~HagE~~~~~--------------~i~~al~~lg~~-RIgHgv~l~~d~~l~~~l~~~~i~l 256 (367)
T 3iar_A 192 PGHVQAYQEAVKSGIHRTVHAGEVGSAE--------------VVKEAVDILKTE-RLGHGYHTLEDQALYNRLRQENMHF 256 (367)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESSSSCHH--------------HHHHHHHTSCCS-EEEECGGGGGCHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHcCCeeEEecCCcCChH--------------HHHHHHHccCCc-eeeeeeeecCCHHHHHHHHhCCcEE
Confidence 5778889999999999999998865421 122233233332 489999985 57999999999999
Q ss_pred EECccchhhcc-----CCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHH
Q 011766 313 SHCPASAMRML-----GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLR 387 (478)
Q Consensus 313 ~~~p~~~~~~~-----~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~ 387 (478)
++||.+|.... ...|++.|+++|++|+++||.+...+ .++..++..+.... +++.++ +.
T Consensus 257 e~cP~SN~~l~~~~~~~~hPi~~ll~~Gv~v~l~TDdp~~~~-~~l~~e~~~a~~~~--------------glt~~e-l~ 320 (367)
T 3iar_A 257 EICPWSSYLTGAWKPDTEHAVIRLKNDQANYSLNTDDPLIFK-STLDTDYQMTKRDM--------------GFTEEE-FK 320 (367)
T ss_dssp EECHHHHHHTSSSCTTSCCHHHHHHHTTCCEEECCBSHHHHT-CCHHHHHHHHHHHH--------------CCCHHH-HH
T ss_pred EECHHHHHHhCCCCCcccChHHHHHHCCCEEEECCCCccccC-CCHHHHHHHHHHHc--------------CCCHHH-HH
Confidence 99999998773 35799999999999999999865432 45778877665432 589998 77
Q ss_pred HHhHHHHHHcCCC
Q 011766 388 MATINGAKSVLWD 400 (478)
Q Consensus 388 ~~T~~pA~~lgl~ 400 (478)
.+|.|+++...++
T Consensus 321 ~l~~nsi~~sf~~ 333 (367)
T 3iar_A 321 RLNINAAKSSFLP 333 (367)
T ss_dssp HHHHHHHHTSSSC
T ss_pred HHHHHHHHHhCCC
Confidence 7789999988774
|
| >2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ... | Back alignment and structure |
|---|
Probab=99.12 E-value=4.4e-09 Score=98.49 Aligned_cols=142 Identities=15% Similarity=0.119 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHcCCceeEeccC--ChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeec-cCChhHHHHHHhcCCeE
Q 011766 236 LLLETRDMAREFKTGIHMHVAE--IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTV-WVNHTEIGLLSRAGVKV 312 (478)
Q Consensus 236 ~l~~~~~~a~~~~~~v~~H~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~-~~~~~~~~~~~~~~~~~ 312 (478)
.+.+.+++|++.|++|.+|... .... + ..+++...+....+..+.||. ..+.+...++.+.|..+
T Consensus 149 ~f~~q~~lA~~~glPv~iH~~~~~r~a~-e-----------~l~iL~~~g~~~~~~~i~H~f~~~~~e~a~~~~~~G~~i 216 (330)
T 2ob3_A 149 VLKAAARASLATGVPVTTHTAASQRDGE-Q-----------QAAIFESEGLSPSRVCIGHSDDTDDLSYLTALAARGYLI 216 (330)
T ss_dssp HHHHHHHHHHHHCCCEEEECCGGGTHHH-H-----------HHHHHHHTTCCGGGEEECSGGGCCCHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCCCHH-H-----------HHHHHHHcCcCcccEEEeCCCCCCCHHHHHHHHhCCCEE
Confidence 3777789999999999999952 2221 1 234455544322345689998 57888999999999998
Q ss_pred EEC--ccchh--------------hc--cCCCcHHHHHHCC--CcEEEcCCCCCCCCCc-CHHHHH-------HH----H
Q 011766 313 SHC--PASAM--------------RM--LGFAPIKEMLHAD--ICVSLGTDGAPSNNRM-SIVDEM-------YL----A 360 (478)
Q Consensus 313 ~~~--p~~~~--------------~~--~~~~~~~~~~~~g--v~v~~gsD~~~~~~~~-~~~~~~-------~~----~ 360 (478)
.+. ....+ .. .....++++++.+ -.+.+.||.+....+. ...... .. .
T Consensus 217 ~~~~~G~~tf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~drilleTD~p~~l~~~~~~~g~~~~~n~pn~~~~~~~ 296 (330)
T 2ob3_A 217 GLDHIPYSAIGLEDNASASALLGIRSWQTRALLIKALIDQGYMKQILVSNDWTFGFSSYVTNIMDVMDRVNPDGMAFIPL 296 (330)
T ss_dssp EECCTTCCCTTCTTCHHHHHHHCSSCHHHHHHHHHHHHHTTCGGGEEECCCCCSEECSSSTTHHHHHHHHCTTGGGHHHH
T ss_pred EeCCCccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCeEEEeCCCCCCcccccccCCCcccccCCCCcchHHH
Confidence 877 22111 00 1112367888888 7899999986311111 000000 00 0
Q ss_pred HHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcC
Q 011766 361 SLINKGREVFANGTTDPAALPAETVLRMATINGAKSVL 398 (478)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lg 398 (478)
..... . .+.|+|++++.++.|.||+++|+
T Consensus 297 ~~ia~-----l----~~~G~~~eev~~~~t~N~~rlf~ 325 (330)
T 2ob3_A 297 RVIPF-----L----REKGVPQETLAGITVTNPARFLS 325 (330)
T ss_dssp THHHH-----H----HHTTCCHHHHHHHHTHHHHHHHS
T ss_pred HHHHH-----H----HHcCCCHHHHHHHHHHHHHHHhc
Confidence 00000 0 01269999999999999999997
|
| >2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.8e-08 Score=91.86 Aligned_cols=232 Identities=11% Similarity=0.009 Sum_probs=124.3
Q ss_pred HHHHHHHHHhcCcceeecCCcc----CHHHHHHHHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccc
Q 011766 127 TLLCGIELIHSGVTCFAEAGGQ----HVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVS 202 (478)
Q Consensus 127 ~~~~~~~~l~~GvTtv~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (478)
......++.++|||++++.+.. ......+.++..|++.+....+.... ....+. ......
T Consensus 49 ~~~~l~~~~~~Gv~~iv~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~hp~~--~~~~~~---~~~~~~----------- 112 (314)
T 2vc7_A 49 AVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYI--DLPFYF---LNRSID----------- 112 (314)
T ss_dssp HHHHHHHHHHTTCCEEEECCCBTTTCCHHHHHHHHHHHCCEEEECEEBCCSS--CCCGGG---TTCCHH-----------
T ss_pred HHHHHHHHHHcCCCEEEecCCCCCCcCHHHHHHHHHHcCCeEEEEeecCCCC--CCchhh---hccCHH-----------
Confidence 3334567889999999987633 24455556666776655432222110 000000 001111
Q ss_pred hhHHHHHHHh--cCCC-----CCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccC-ChhhhHHHhhhcCCCCc
Q 011766 203 SSQKELYAKH--HHAA-----DGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAE-IPYENQVVMDTRKVDHG 274 (478)
Q Consensus 203 ~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~-~~~~~~~~~~~~~~~~~ 274 (478)
+..+.+++. ...+ .+.++..+..........+.+.+.+++|++.|+++.+|+.+ .....+
T Consensus 113 -~l~~~~~~~~~~gige~G~~~g~i~~~ld~~~~~~~q~~~~~~~~~lA~~~~~pv~iH~~~~~~~~~~----------- 180 (314)
T 2vc7_A 113 -EIADLFIHDIKEGIQGTLNKAGFVKIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLE----------- 180 (314)
T ss_dssp -HHHHHHHHHHHTCSSSSSCCCCSEEEECCTTCSCHHHHHHHHHHHHHHHHHCCCEEEECCTTTTHHHH-----------
T ss_pred -HHHHHHHHHHHhhcccCCCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHHHCCEEEEeCCCcccChHH-----------
Confidence 333333321 1111 12233333333222222345777889999999999999962 111111
Q ss_pred hHHHHhhhCCCCCCeeeeeecc-CChhHHHHHHhcCCeEEECccch--h-h-ccCCCcHHHHHHC--CCcEEEcCCCCCC
Q 011766 275 TVTFLDKIEFLQNNLLSAHTVW-VNHTEIGLLSRAGVKVSHCPASA--M-R-MLGFAPIKEMLHA--DICVSLGTDGAPS 347 (478)
Q Consensus 275 ~~~~l~~~~~~~~~~~i~h~~~-~~~~~~~~~~~~~~~~~~~p~~~--~-~-~~~~~~~~~~~~~--gv~v~~gsD~~~~ 347 (478)
..+.+...+....+.++.|+.. .+.+.+..+.+.|..+.++.... + . ......+.++++. .-++.++||++..
T Consensus 181 ~~~~l~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~i~~~~~~g~~drilleTD~~~~ 260 (314)
T 2vc7_A 181 QQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCT 260 (314)
T ss_dssp HHHHHHHTTCCGGGEEETTGGGCCCHHHHHHHHHTTCEEEECCTTCTTTSCHHHHHHHHHHHHHTTCTTTEEECCCCBSS
T ss_pred HHHHHHHcCCCcccEEEECCCCCCCHHHHHHHHHcCCEEEEeCCCcccCCCHHHHHHHHHHHHHcCCCCeEEEcCCcccc
Confidence 3345555554444667899986 46888999999999888773111 0 0 0112234556665 4678999998521
Q ss_pred C------CCcCHH--------HHHH-HHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcC
Q 011766 348 N------NRMSIV--------DEMY-LASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVL 398 (478)
Q Consensus 348 ~------~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lg 398 (478)
. ..+... .-+. ....+. ..++|.+++.+..|.||+++|+
T Consensus 261 ~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~l~------------~~g~~~e~~~~~~~~N~~rlf~ 314 (314)
T 2vc7_A 261 IDWGTAKPEYKPKLAPRWSITLIFEDTIPFLK------------RNGVNEEVIATIFKENPKKFFS 314 (314)
T ss_dssp BCCGGGCTTSHHHHCTTCSTTHHHHTHHHHHH------------HTTCCHHHHHHHHTHHHHHHTC
T ss_pred ccccccchhhhhcCCCCcCHHHHHHHHHHHHH------------HcCCCHHHHHHHHHHCHHHHhC
Confidence 0 000000 0000 000010 1259999999999999999885
|
| >1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} SCOP: c.1.9.3 | Back alignment and structure |
|---|
Probab=99.00 E-value=2.4e-08 Score=92.17 Aligned_cols=139 Identities=12% Similarity=0.027 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeecc-CChhHHHHHHhcCCeEE
Q 011766 235 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVW-VNHTEIGLLSRAGVKVS 313 (478)
Q Consensus 235 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~-~~~~~~~~~~~~~~~~~ 313 (478)
+.+.+.+++|++.|++|.+|+....... ...+.+...+....+.++.|+.. .+.+.+..+.+.|..+.
T Consensus 138 ~~~~~~~~~a~~~~~pv~iH~~~~~~~~-----------~~~~~l~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~G~~i~ 206 (291)
T 1bf6_A 138 KVFIAAALAHNQTGRPISTHTSFSTMGL-----------EQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQ 206 (291)
T ss_dssp HHHHHHHHHHHHHCCCEEEECGGGCSHH-----------HHHHHHHHTTCCGGGEEECCCCSSCCHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHCCeEEEeCCCCCChH-----------HHHHHHHHcCCCchhEEEECCCCCCCHHHHHHHHHCCCEEE
Confidence 4577889999999999999995321100 13344555444444668899965 57788888999998887
Q ss_pred ECccchh---h-ccCCCcHHHHHHCC--CcEEEcCCCCCCC-------CCcCHH-HHHHHHHHHhcccccccCCCCCCCC
Q 011766 314 HCPASAM---R-MLGFAPIKEMLHAD--ICVSLGTDGAPSN-------NRMSIV-DEMYLASLINKGREVFANGTTDPAA 379 (478)
Q Consensus 314 ~~p~~~~---~-~~~~~~~~~~~~~g--v~v~~gsD~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (478)
+...... . ......++++++.+ -++.++||++... +..... ... ...+. ..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dril~~TD~p~~~~~~~~~~~~~~~~~~~~-~~~l~-------------~~g 272 (291)
T 1bf6_A 207 FDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDITRRSHLKANGGYGYDYLLTTF-IPQLR-------------QSG 272 (291)
T ss_dssp ECCTTCTTTSCHHHHHHHHHHHHHTTCGGGEEECCCCCSGGGSGGGTSCCTTHHHHTH-HHHHH-------------HTT
T ss_pred EccCcccCCCCHHHHHHHHHHHHHhCCCCeEEEcCCCCCCccchhcCCCCHHHHHHHH-HHHHH-------------HcC
Confidence 7532100 0 01123466788887 6789999986320 001111 111 01111 125
Q ss_pred CCHHHHHHHHhHHHHHHcC
Q 011766 380 LPAETVLRMATINGAKSVL 398 (478)
Q Consensus 380 ls~~~al~~~T~~pA~~lg 398 (478)
+|.+++.+..|.||+++|+
T Consensus 273 ~~~~~~~~~~~~N~~rl~~ 291 (291)
T 1bf6_A 273 FSQADVDVMLRENPSQFFQ 291 (291)
T ss_dssp CCHHHHHHHHTHHHHHHCC
T ss_pred CCHHHHHHHHHHhHHHHhC
Confidence 9999999999999999885
|
| >3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=3.8e-07 Score=85.33 Aligned_cols=241 Identities=13% Similarity=0.105 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHHhcCcceeecCC----ccCHHHHHHHHHHhCCeEEEecccccCCCCCCCcccccCC-cccCCCCCC
Q 011766 121 EDSYISTLLCGIELIHSGVTCFAEAG----GQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTT-DDCIQPDSS 195 (478)
Q Consensus 121 ~~~~~~~~~~~~~~l~~GvTtv~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 195 (478)
++.........+.+.+.|+.|++|.- +..+..+.+..+..|++...+..++......+..+..... ....+
T Consensus 79 ~~~~~~~~~~l~~~k~~Gg~tIVd~T~~g~GRd~~~l~~is~~tGv~IV~~TG~y~~~~~~p~~~~~~~~~~~~~e---- 154 (360)
T 3tn4_A 79 DESLRVAVEAAEKMKRHGIQTVVDPTPNDCGRNPAFLRRVAEETGLNIICATGYYYEGEGAPPYFQFRRLLGTAED---- 154 (360)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEECCCTTTTCCHHHHHHHHHHHCCEEEEEECCCCGGGSCTHHHHHHHHHTCHHH----
T ss_pred hhHHHHHHHHHHHHHhcCCCeEEECCCCCcCcCHHHHHHHHHHcCCCEEEeCccccCcccCCcccchhhhcccCHH----
Confidence 33344444556678899999999853 3557777888899999998776544332211111111000 00000
Q ss_pred ccccccchhHHHH-HHHhcCC------CCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhh
Q 011766 196 ISFNFVSSSQKEL-YAKHHHA------ADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDT 268 (478)
Q Consensus 196 ~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~ 268 (478)
+..++ +++.... ..+.++.......+.....+.+++.++++++.|++|.+|........+
T Consensus 155 --------~l~~~~i~Ei~~Gi~~tgikaG~I~~~~~~~~~t~~E~k~frA~a~aa~etG~Pv~iHt~~~~~~~e----- 221 (360)
T 3tn4_A 155 --------DIYDMFMAELTEGIADTGIKAGVIKLASSKGRITEYEKMFFRAAARAQKETGAVIITHTQEGTMGPE----- 221 (360)
T ss_dssp --------HHHHHHHHHHHTCSTTSCCCCSEEEEECBTTBCCHHHHHHHHHHHHHHHHHCCEEEEECSTTCCHHH-----
T ss_pred --------HHHHHHHHHHHhccccCCCcceEEEEEccCCCCCHHHHHHHHHHHHHHHHhCCcEEEEcCcccCCHH-----
Confidence 22222 2222221 123344333222332333456888889999999999999976433211
Q ss_pred cCCCCchHHHHhhhCCCCCCeeeee-eccCChhHHHHHHhcCCeEEECccc-----hhh--ccCCCcHHHHHHCC--CcE
Q 011766 269 RKVDHGTVTFLDKIEFLQNNLLSAH-TVWVNHTEIGLLSRAGVKVSHCPAS-----AMR--MLGFAPIKEMLHAD--ICV 338 (478)
Q Consensus 269 ~~~~~~~~~~l~~~~~~~~~~~i~h-~~~~~~~~~~~~~~~~~~~~~~p~~-----~~~--~~~~~~~~~~~~~g--v~v 338 (478)
.+..+.+.+.-..+.++.| |...+.+..+++.+.|..+.+.-.. .+. ......++++++.| -++
T Consensus 222 ------~l~iL~eeG~~~~~vvi~H~~~~~d~~~~~~~l~~G~yl~fD~iG~~~~~~~p~d~~r~~~l~~lv~~g~~drI 295 (360)
T 3tn4_A 222 ------QAAYLLEHGADPKKIVIGHMCDNTDPDYHRKTLAYGVYIAFDRFGIQGMVGAPTDEERVRTLLALLRDGYEKQI 295 (360)
T ss_dssp ------HHHHHHHTTCCGGGEEECCGGGCCCHHHHHHHHTTTCEEEECCTTCCCSTTCCCHHHHHHHHHHHHHTTCGGGE
T ss_pred ------HHHHHHHcCCCCCceEEEcCCCCCCHHHHHHHHHcCCEEEEcccccccccCCCChHHHHHHHHHHHHhcCcceE
Confidence 2345566666667889999 6777788889999999988764210 000 01224567888887 479
Q ss_pred EEcCCCC------CCC-----------CCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHc
Q 011766 339 SLGTDGA------PSN-----------NRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSV 397 (478)
Q Consensus 339 ~~gsD~~------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~l 397 (478)
.+++|.+ +.. +.....-.-..+.+. +.|+|.+++-++.+.||+++|
T Consensus 296 LLstDa~~~~~~~py~~p~p~r~~~~~~~y~~i~~~~ip~L~-------------~~Gvs~e~I~~i~~~NP~rlf 358 (360)
T 3tn4_A 296 MLSHDTVNVWLGRPFTLPEPFAEMMKNWHVEHLFVNIIPALK-------------NEGIRDEVLEQMFIGNPAALF 358 (360)
T ss_dssp EECCCCEEEESSSCCCCCHHHHHHTTTCSTTHHHHTHHHHHH-------------HTTCCHHHHHHHHTHHHHHHH
T ss_pred EEecCCCcccccCCCCCcccccccCCCCCchhHHHHHHHHHH-------------HcCCCHHHHHHHHHHhHHHHh
Confidence 9999962 110 001111000011111 237999999999999999987
|
| >3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=4.2e-07 Score=85.24 Aligned_cols=259 Identities=13% Similarity=0.052 Sum_probs=144.6
Q ss_pred HHHHHHHHhcCcceeecCC----ccCHHHHHHHHHHh---CCeEEEecccccCCCCC-CCcccccCCcccCCCCCCcccc
Q 011766 128 LLCGIELIHSGVTCFAEAG----GQHVSEMAKAVELL---GLRACLVQSTMDCGEGL-PASWAVRTTDDCIQPDSSISFN 199 (478)
Q Consensus 128 ~~~~~~~l~~GvTtv~~~~----~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 199 (478)
.....++.+.|++++++.- +.....+.+..+.. |++.+.+..++...... .+.|....+. +
T Consensus 52 ~~el~~~~~~G~~tiVd~t~~~~GRd~~~l~~is~~t~~~Gv~Iv~~TG~y~~~~~~~~~~~~~~~~~---e-------- 120 (363)
T 3ovg_A 52 IKEFKEFIDRGGSTIVTMDPPNVGRDVLKTLEIANAVKNLGGNVIMSTGFHKAKFYDKYSSWLAVVPT---E-------- 120 (363)
T ss_dssp HHHHHHHHHTTEEEEEECCCTTTTCCHHHHHHHHHHHGGGTCEEEEEEECCCGGGSCTTTSHHHHSCH---H--------
T ss_pred HHHHHHHHHhCCCeEEEeCCCccCCCHHHHHHHHHhcccCCcEEEEeCCCCcCcccccCcHhhhcCCH---H--------
Confidence 3344556789999999853 34455666666665 99998776554322110 0111111010 0
Q ss_pred ccchhHHHHHHHhcC-------------CCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHh
Q 011766 200 FVSSSQKELYAKHHH-------------AADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVM 266 (478)
Q Consensus 200 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~ 266 (478)
.++....+.+..-.. ...+.+++.++...+.....+.+.+.+++|++.|++|.+|........+
T Consensus 121 ~l~~~~~~ei~~Gi~~~~~~gp~~~~t~ikaG~ikig~s~~~~t~~Q~~~f~aq~~~A~e~glPViiH~r~gr~a~d--- 197 (363)
T 3ovg_A 121 EIVKMCVAEIEEGMDEYNYNGPVVKRSKAKAGIIKAGTGYGAIDRLELKALEVAARTSILTGCPILVHTQLGTMALE--- 197 (363)
T ss_dssp HHHHHHHHHHHTCCBTTTTSSSCCCBCSCCCCEEEEEEEETBEEHHHHHHHHHHHHHHHHHCCCEEEEEETTCSHHH---
T ss_pred HHHHHHHHHHHhcccccccccccccCCCccCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCEEEEeCCCCCCHHH---
Confidence 111122222222111 1124456555544333333456777889999999999999864221111
Q ss_pred hhcCCCCchHHHHhhhCCCCCCeeeeeecc-CChhHHHHHH-hcCCeEEECccchhh--c--cCCCcHHHHHHCCC--cE
Q 011766 267 DTRKVDHGTVTFLDKIEFLQNNLLSAHTVW-VNHTEIGLLS-RAGVKVSHCPASAMR--M--LGFAPIKEMLHADI--CV 338 (478)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~-~~~~~~~~~~-~~~~~~~~~p~~~~~--~--~~~~~~~~~~~~gv--~v 338 (478)
..+++...+....+.++.|+.. -+.+....+. +.|..+.+.-..... . .....++++++.+. .+
T Consensus 198 --------~l~iL~e~g~~~~~vvi~H~~~~~~~~~a~~~l~~~G~yI~f~g~~~~~~~~~~~ra~~l~~lv~~~p~drI 269 (363)
T 3ovg_A 198 --------VAKHLIGFGANPDKIQISHLNKNPDKYYYEKVIKETGVTLCFDGPDRVKYYPDSLLAENIKYLVDKGLQKHI 269 (363)
T ss_dssp --------HHHHHHHHTCCGGGEEEECGGGSCCHHHHHHHHHHHCCEEEECCTTCTTTCCHHHHHHHHHHHHHTTCGGGE
T ss_pred --------HHHHHHhcCCCCCcEEEEcCCCCCCHHHHHHHHHHCCcEEEECCeeccccCChhHHHHHHHHHHHhcCCCeE
Confidence 3455665555445678889985 4566677777 889888876321100 0 11235677888774 79
Q ss_pred EEcCCCCCCCCCcCHHHHH------HHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccc
Q 011766 339 SLGTDGAPSNNRMSIVDEM------YLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKA 412 (478)
Q Consensus 339 ~~gsD~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~A 412 (478)
.+.||++.. ..+.+.... ............ ....|+|.+++.++.|.||+++|++. ..+++.+|+.-
T Consensus 270 LleTDap~~-~~l~~~G~~~g~~~n~p~~l~~~~~~~-----a~~rGis~eei~~it~~Np~rlf~l~-~~~~~~~~~~~ 342 (363)
T 3ovg_A 270 TLSLDAGRI-LYQRNYGLTKGKQTFGLAYLFDRFLPL-----LKQVGVSKEAIFDILVNNPKRVLAFD-EKRNFDPLKVS 342 (363)
T ss_dssp EECCCCCSG-GGSHHHHHHTTEECCCTHHHHHTHHHH-----HHHHTCCHHHHHHHHTHHHHHHTSCC-CCCCCCGGGSC
T ss_pred EEeCCCCCC-cCCCCCCccCCCCCCCccHHHHHHHHH-----HHHcCCCHHHHHHHHHHHHHHHHCCC-CcCccCcccCC
Confidence 999998632 111111100 000000000000 01126999999999999999999995 56999999876
Q ss_pred cEE
Q 011766 413 DMV 415 (478)
Q Consensus 413 Dlv 415 (478)
+-|
T Consensus 343 ~~~ 345 (363)
T 3ovg_A 343 KEV 345 (363)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.8e-06 Score=79.99 Aligned_cols=233 Identities=9% Similarity=0.009 Sum_probs=131.5
Q ss_pred HHHHHHHHHHhcCcceeecCC----ccCHHHHHHHHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCcccccc
Q 011766 126 STLLCGIELIHSGVTCFAEAG----GQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFV 201 (478)
Q Consensus 126 ~~~~~~~~~l~~GvTtv~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (478)
.......++..+|++++++.. +.....+.+..+..|+..+....+.... ..+.+... ...+
T Consensus 87 ~~~~~l~~~~~aGv~tiV~~t~~g~gr~~~~l~~la~~~gv~i~~~tG~y~~~--~~P~~~~~---~~~~---------- 151 (364)
T 3k2g_A 87 LAIAEVKQFAAVGGRSIVDPTCRGIGRDPVKLRRISAETGVQVVMGAGYYLAS--SMPETAAR---LSAD---------- 151 (364)
T ss_dssp HHHHHHHHHHHTTCCEEEECCCBTTTCCHHHHHHHHHHHCCEEEECCSBCCGG--GCCGGGGT---CCHH----------
T ss_pred HHHHHHHHHHhcCCCeEEEeCCCcccCCHHHHHHHHHHhCCcEEEEeCccCCC--CCchhhcc---CCHH----------
Confidence 334566778999999999975 3456666677778888776543332110 00111110 0111
Q ss_pred chhHHHHH-HHhcC------CCCCCeEEEEeccc-cccCCHHHHHHHHHHHHHcCCceeEeccCC-hhhhHHHhhhcCCC
Q 011766 202 SSSQKELY-AKHHH------AADGRIRIWFGIRQ-IMNATDRLLLETRDMAREFKTGIHMHVAEI-PYENQVVMDTRKVD 272 (478)
Q Consensus 202 ~~~~~~~~-~~~~~------~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~-~~~~~~~~~~~~~~ 272 (478)
+..+.+ ++... ...+.+.- ++... ....-.+.+.+.+++|++.|++|.+|..+. ....+
T Consensus 152 --~L~~~~~~ei~~Gi~~~~vkag~IGE-iGld~~~t~~q~~~f~aq~~~A~~~glPV~iH~~gr~~a~~e--------- 219 (364)
T 3k2g_A 152 --DIADEIVAEALEGTDGTDARIGLIGE-IGVSSDFTAEEEKSLRGAARAQVRTGLPLMVHLPGWFRLAHR--------- 219 (364)
T ss_dssp --HHHHHHHHHHHTCBTTBSCCCSSEEE-EECCTTCCHHHHHHHHHHHHHHHHHCCCEEEECCTTSCCHHH---------
T ss_pred --HHHHHHHHHHHhccccCCcceeEEEE-EEcCCCCCHHHHHHHHHHHHHHHHHCCeEEEecCCCCccHHH---------
Confidence 333332 22211 11122211 22222 111123357777889999999999998321 22111
Q ss_pred CchHHHHhhhCCCCCCeeeeeecc-C-ChhHHHHHHhcCCeEEECccch---hhc---------cCCCcHHHHHHCC--C
Q 011766 273 HGTVTFLDKIEFLQNNLLSAHTVW-V-NHTEIGLLSRAGVKVSHCPASA---MRM---------LGFAPIKEMLHAD--I 336 (478)
Q Consensus 273 ~~~~~~l~~~~~~~~~~~i~h~~~-~-~~~~~~~~~~~~~~~~~~p~~~---~~~---------~~~~~~~~~~~~g--v 336 (478)
...++...+....+.++.||.. - +.+...++.+.|..+.+.-... +.. .....++++++.| -
T Consensus 220 --~l~iL~e~g~~~~~vvi~H~~~s~~~~e~a~~~l~~G~~I~f~g~gt~~~f~~~~~~~~~d~~ra~~l~~lv~~gp~d 297 (364)
T 3k2g_A 220 --VLDLVEEEGADLRHTVLCHMNPSHMDPVYQATLAQRGAFLEFDMIGMDFFYADQGVQCPSDDEVARAILGLADHGYLD 297 (364)
T ss_dssp --HHHHHHHTTCCGGGEEECCCGGGTTCHHHHHHHHHHTCEEEECCTTCCCEETTTTEECCCHHHHHHHHHHHHHTTCGG
T ss_pred --HHHHHHHcCCCCCceEEECCCCCCCCHHHHHHHHhCCcEEEecCCcccccccccccccccHHHHHHHHHHHHHhCCcc
Confidence 2345555554444577789983 5 8888999999999887763211 100 1223567788888 4
Q ss_pred cEEEcCCCCCC-------CCCcCHH-HHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCC
Q 011766 337 CVSLGTDGAPS-------NNRMSIV-DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDN 401 (478)
Q Consensus 337 ~v~~gsD~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~ 401 (478)
.+.+.||.+.. .+..... ....... . ..|+|.+++.++.|.||+++|+++.
T Consensus 298 rilleTD~p~~~~~~~~gg~~~~~l~~~~~~~l-~-------------~~Gis~eei~~~~~~Np~rlf~l~~ 356 (364)
T 3k2g_A 298 RILLSHDVFVKMMLTRYGGNGYAFVTKHFLPRL-R-------------RHGLDDAALETLMVTNPRRVFDASI 356 (364)
T ss_dssp GEEECCCCCSGGGSGGGTSCTTSHHHHHHHHHH-H-------------HTTCCHHHHHHHHTHHHHHHHCTTS
T ss_pred cEEEeCCCCCCCCCCCCCCCCcchHHHHHHHHH-H-------------HcCCCHHHHHHHHHHHHHHHhCCCc
Confidence 79999998521 1111221 1111111 1 1269999999999999999999964
|
| >2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate deaminase, COF 5'-phosphate, structural genomics; HET: CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=2.4e-08 Score=100.40 Aligned_cols=128 Identities=19% Similarity=0.182 Sum_probs=96.6
Q ss_pred HHHHHH-cCC---ceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhH--HHHHHhcCCeEEE
Q 011766 241 RDMARE-FKT---GIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE--IGLLSRAGVKVSH 314 (478)
Q Consensus 241 ~~~a~~-~~~---~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~--~~~~~~~~~~~~~ 314 (478)
+..+++ .|+ ++++|+.+...... ..+.+ ++.+. |+||.++.++. ++++++.++.+++
T Consensus 504 Ln~ar~~~Gl~~i~~t~HaGE~~~~e~-----------l~~al-----Lg~~R-IgHGv~l~edp~Li~lla~~~I~vev 566 (701)
T 2a3l_A 504 LNKLRESKGMTTITLRPHSGEAGDIDH-----------LAATF-----LTCHS-IAHGINLRKSPVLQYLYYLAQIGLAM 566 (701)
T ss_dssp HHHHHTTTTCCCCEECCCCSSSSCTHH-----------HHHHH-----HHCSS-CSCCGGGGGCHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHcCCCCCCcccccCCCCCHHH-----------HHHHh-----cCCCe-EEEEeecccCHHHHHHHHHcCCcEEE
Confidence 345564 677 79999988642111 11111 33333 69999998755 8999999999999
Q ss_pred Cccchhhc-cCCC--cHHHHHHCCCcEEEcCCCCCCCCC--cCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHH
Q 011766 315 CPASAMRM-LGFA--PIKEMLHADICVSLGTDGAPSNNR--MSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMA 389 (478)
Q Consensus 315 ~p~~~~~~-~~~~--~~~~~~~~gv~v~~gsD~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~ 389 (478)
||.+|..+ .+.. |+..|+++|++|+++||.+...+. .+++++++.+.... +++..++.++
T Consensus 567 CP~SN~kl~~~~~~HPi~~ll~~Gv~VsLgTDdp~~~~~t~~dL~~Ey~~aa~~~--------------~ls~~dl~~l- 631 (701)
T 2a3l_A 567 SPLSNNSLFLDYHRNPFPVFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAASVW--------------KLSACDLCEI- 631 (701)
T ss_dssp CHHHHTTTTCCSTTCSHHHHHHTTCCEEECCBCHHHHCCSSSHHHHHHHHHHHHH--------------TCCHHHHHHH-
T ss_pred CccchhhhccCchHhHHHHHHHCCCcEEEeCCCccccCCCCcCHHHHHHHHHHHc--------------CCCHHHHHHH-
Confidence 99999866 4555 999999999999999998765443 46899998877653 3889996666
Q ss_pred hHHHHHHcCCC
Q 011766 390 TINGAKSVLWD 400 (478)
Q Consensus 390 T~~pA~~lgl~ 400 (478)
|.|++++.+++
T Consensus 632 a~Ns~~asfl~ 642 (701)
T 2a3l_A 632 ARNSVYQSGFS 642 (701)
T ss_dssp HHHHHHHSCCC
T ss_pred HHHHHHHhCCC
Confidence 99999999985
|
| >2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.2e-06 Score=78.00 Aligned_cols=132 Identities=16% Similarity=0.141 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEE
Q 011766 235 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 314 (478)
Q Consensus 235 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~ 314 (478)
+.+...+++|++++++|.+|+...... ..+++...+ ..+.++ |+..-+.+.++.+.+.|+.+.+
T Consensus 126 ~~f~~~~~la~~~~lPv~iH~~~a~~~-------------~~~il~~~~--~~~~v~-H~~~g~~~~~~~~~~~g~~i~~ 189 (272)
T 2y1h_A 126 QVLIRQIQLAKRLNLPVNVHSRSAGRP-------------TINLLQEQG--AEKVLL-HAFDGRPSVAMEGVRAGYFFSI 189 (272)
T ss_dssp HHHHHHHHHHHHHTCCEEEECTTCHHH-------------HHHHHHHTT--CCSEEE-ETCCSCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhCCcEEEEeCCcHHH-------------HHHHHHhCC--CCCEEE-EccCCCHHHHHHHHHCCCEEEE
Confidence 457788899999999999999753221 223444433 124455 9977677888999999999998
Q ss_pred CccchhhccCCCcHHHHHHCC--CcEEEcCCCCCCC------CCcCHHH-HHHHHHHHhcccccccCCCCCCCCCCHHHH
Q 011766 315 CPASAMRMLGFAPIKEMLHAD--ICVSLGTDGAPSN------NRMSIVD-EMYLASLINKGREVFANGTTDPAALPAETV 385 (478)
Q Consensus 315 ~p~~~~~~~~~~~~~~~~~~g--v~v~~gsD~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 385 (478)
.+.... ...++++++.. -++.++||++... +...... .+...... .|+|.+++
T Consensus 190 ~g~~~~----~~~~~~~~~~~~~drll~eTD~P~~~p~~g~~~~p~~l~~~~~~la~~--------------~g~~~e~~ 251 (272)
T 2y1h_A 190 PPSIIR----SGQKQKLVKQLPLTSICLETDSPALGPEKQVRNEPWNISISAEYIAQV--------------KGISVEEV 251 (272)
T ss_dssp CGGGGT----CHHHHHHHHHSCGGGEEECCCTTSSCSSTTSCCCGGGHHHHHHHHHHH--------------HTSCHHHH
T ss_pred CCcccC----cHHHHHHHHhCCHHHEEEecCCCCCCCCCCCcCcHHHHHHHHHHHHHH--------------HCcCHHHH
Confidence 865431 12456666553 3789999986321 1111111 11111110 15899999
Q ss_pred HHHHhHHHHHHcCCC
Q 011766 386 LRMATINGAKSVLWD 400 (478)
Q Consensus 386 l~~~T~~pA~~lgl~ 400 (478)
.+..+.||++++++.
T Consensus 252 ~~~~~~N~~~l~~~~ 266 (272)
T 2y1h_A 252 IEVTTQNALKLFPKL 266 (272)
T ss_dssp HHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHHhH
Confidence 999999999999984
|
| >3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.6e-06 Score=80.89 Aligned_cols=243 Identities=15% Similarity=0.092 Sum_probs=134.6
Q ss_pred ChHHHHHHHHHHHHHHHhcCcceeecCCc----cCHHHHHHHHHHhCCeEEEecccccCCCCCCCcccccC-CcccCCCC
Q 011766 119 TEEDSYISTLLCGIELIHSGVTCFAEAGG----QHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRT-TDDCIQPD 193 (478)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~GvTtv~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 193 (478)
...+.+........++.++||+++++... .....+.+.++..|+..+....+.......+..+.... .....+
T Consensus 57 ~~~~~~~~~~~el~~a~~aGv~tiV~~~~~~~~r~~~~l~~la~~~g~~i~~~tG~hp~~~~~~~~~~~~~~~~~~~~-- 134 (339)
T 3gtx_A 57 DHAAALASCTETARALLARGIQTVVDATPNGCGRNPAFLREVSEATGLQILCATGFYYEGGGATTYFKFRASLGDAES-- 134 (339)
T ss_dssp CHHHHHHHHHHHHHHHHHTTEEEEEECCCTTTTCCHHHHHHHHHHHCCEEECEECCCCTTTSSCHHHHHHHHHSCHHH--
T ss_pred chHHHHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHcCCcEEEEcCCCccCccCCcCCcccccccCCHH--
Confidence 34455666666778899999999998652 45666666677778776554333221000000000000 000011
Q ss_pred CCccccccchhHHHHHHH-hc-CCCC-----CCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHh
Q 011766 194 SSISFNFVSSSQKELYAK-HH-HAAD-----GRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVM 266 (478)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~-~~-~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~ 266 (478)
+..+++.+ .. ..+. +.+.+.+..+.......+.+.+.+++|++.|++|.+|........+
T Consensus 135 ----------~L~~~~~~e~~~gIg~tg~k~g~IEigld~~~~~~~q~~~f~aq~~lA~~~glPViiH~~~gr~a~~--- 201 (339)
T 3gtx_A 135 ----------EIYEMMRTEVTEGIAGTGIRAGVIKLASSRDAITPYEQLFFRAAARVQRETGVPIITHTQEGQQGPQ--- 201 (339)
T ss_dssp ----------HHHHHHHHHHHTCSTTSSCCCSEEEEECCSSCCCHHHHHHHHHHHHHHHHHCCCEEEECSTTCCHHH---
T ss_pred ----------HHHHHHHHHHHhcccccCcccceEEEEcCCCCCCHHHHHHHHHHHHHHHHHCCeEEEeCCCCcCHHH---
Confidence 33333322 11 1111 2234434443222222335677778999999999999954221111
Q ss_pred hhcCCCCchHHHHhhhCCCCCCeeeeeec-cCChhHHHHHHhcCCeEEECccch--hh-----ccCCCcHHHHHHCCC--
Q 011766 267 DTRKVDHGTVTFLDKIEFLQNNLLSAHTV-WVNHTEIGLLSRAGVKVSHCPASA--MR-----MLGFAPIKEMLHADI-- 336 (478)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~~~~~~~i~h~~-~~~~~~~~~~~~~~~~~~~~p~~~--~~-----~~~~~~~~~~~~~gv-- 336 (478)
..+++...+....+.++.||. .-+.++...+.+.|..+.+.-... +. ......++++++.+.
T Consensus 202 --------~~~iL~~~~~~~~~~vi~H~~~~~~~e~a~~~l~~G~~i~~~g~~t~~~~~~p~~~~~~~~l~~li~~~~~d 273 (339)
T 3gtx_A 202 --------QAELLTSLGADPARIMIGHMDGNTDPAYHRETLRHGVSIAFDRIGLQGMVGTPTDAERLSVLTTLLGEGYAD 273 (339)
T ss_dssp --------HHHHHHHTTCCGGGEEECCGGGCCCHHHHHHHHTTTCEEEECCTTCCSSTTCCCHHHHHHHHHHHHHTTCGG
T ss_pred --------HHHHHHHcCCCcccEEEEccCCCCCHHHHHHHHHcCcEEEEccCccccccCCCchHHHHHHHHHHHHhcCCC
Confidence 234555555444456788998 467888999999999888754311 00 012234677888774
Q ss_pred cEEEcCCCCCCC-----------------CCcCHH-HHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcC
Q 011766 337 CVSLGTDGAPSN-----------------NRMSIV-DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVL 398 (478)
Q Consensus 337 ~v~~gsD~~~~~-----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lg 398 (478)
++.+.||++... +..... ....... . ..|+|.+++.++.|.||+++|+
T Consensus 274 rilleTD~p~~~~~~P~~~p~~~~~~~g~n~p~~l~~~~~~~~-~-------------~~Gis~e~i~~~~~~Np~rlf~ 339 (339)
T 3gtx_A 274 RLLLSHDSIWHWLGRPPAIPEAALPAVKDWHPLHISDDILPDL-R-------------RRGITEEQVGQMTVGNPARLFG 339 (339)
T ss_dssp GEEECCCCEEEESSSCCCCCGGGHHHHHTCSTTHHHHTHHHHH-H-------------HTTCCHHHHHHHHTHHHHHHHC
T ss_pred eEEEecCCCccccCCcccccccccccCCCCCchhHHHHHHHHH-H-------------HcCCCHHHHHHHHHHHHHHHhC
Confidence 799999986310 001111 1111111 1 1369999999999999999985
|
| >1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.68 E-value=2.8e-06 Score=76.67 Aligned_cols=134 Identities=12% Similarity=0.069 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEE
Q 011766 235 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 314 (478)
Q Consensus 235 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~ 314 (478)
+.+...+++|.+++++|.+|+...... ..+.+...+. ..+. +.|+..-+.+.+..+.+.|..+.+
T Consensus 114 ~~f~~~~~~a~~~~~Pv~iH~~~a~~~-------------~~~il~~~~~-~~~~-i~H~~~g~~~~~~~~~~~g~~i~~ 178 (259)
T 1zzm_A 114 WLLDEQLKLAKRYDLPVILHSRRTHDK-------------LAMHLKRHDL-PRTG-VVHGFSGSLQQAERFVQLGYKIGV 178 (259)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEESCHHH-------------HHHHHHHHCC-TTCE-EETTCCSCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhCCcEEEEecccHHH-------------HHHHHHhcCC-CCCE-EEEcCCCCHHHHHHHHHCCCEEEE
Confidence 467788899999999999999653221 2344444432 1233 449877677888888889999998
Q ss_pred CccchhhccCCCcHHHHHHCC--CcEEEcCCCCCCCC--------CcCHH-HHHHHHHHHhcccccccCCCCCCCCCCHH
Q 011766 315 CPASAMRMLGFAPIKEMLHAD--ICVSLGTDGAPSNN--------RMSIV-DEMYLASLINKGREVFANGTTDPAALPAE 383 (478)
Q Consensus 315 ~p~~~~~~~~~~~~~~~~~~g--v~v~~gsD~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ls~~ 383 (478)
...... .....++++++.. -++.++||++.... ..... ..+...... .++|.+
T Consensus 179 ~g~~~~--~~~~~~~~~~~~~~~dril~eTD~P~~~p~~~~g~~~~p~~l~~~~~~la~~--------------~g~~~e 242 (259)
T 1zzm_A 179 GGTITY--PRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFAVLCEL--------------RREPAD 242 (259)
T ss_dssp CGGGGC--TTTCSHHHHHHHSCGGGEEECCCBTSSCCTTCTTSCCCGGGHHHHHHHHHHH--------------CSSCHH
T ss_pred Cceeec--cccHHHHHHHHhCCHHHEEEecCCCCccCCCCCCCCCcHHHHHHHHHHHHHH--------------HCcCHH
Confidence 754321 1223456666543 57999999863210 01111 111111101 259999
Q ss_pred HHHHHHhHHHHHHcCC
Q 011766 384 TVLRMATINGAKSVLW 399 (478)
Q Consensus 384 ~al~~~T~~pA~~lgl 399 (478)
++.+..|.|++++|++
T Consensus 243 ~~~~~~~~Na~rl~~l 258 (259)
T 1zzm_A 243 EIAQALLNNTYTLFNV 258 (259)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999999987
|
| >3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX; 1.60A {Listeria monocytogenes serotype 4b strorganism_taxid} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=98.57 E-value=5e-06 Score=77.07 Aligned_cols=245 Identities=12% Similarity=0.104 Sum_probs=133.8
Q ss_pred HHHHHHHHHhcCcceeecCC----ccCHHHHHHHHHHhCCeEEEecccccCCCC---CCCcccc--cC---CcccCCCCC
Q 011766 127 TLLCGIELIHSGVTCFAEAG----GQHVSEMAKAVELLGLRACLVQSTMDCGEG---LPASWAV--RT---TDDCIQPDS 194 (478)
Q Consensus 127 ~~~~~~~~l~~GvTtv~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~--~~---~~~~~~~~~ 194 (478)
......++.+.|++|++|.. +.....+.+..+..|++.+.+..++..... +...+.. .. .+....
T Consensus 48 ~~~el~~~~~~G~~tiVd~t~~~~gR~~~~l~~is~~tgv~iv~~TG~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 124 (330)
T 3pnz_A 48 SQLDVQDFADLGGKTIVDATAVDYGRRVLDVAQISKETGIQIVGTAGFNKSFLWDGKIKPELKPIIGDFETYYEWIE--- 124 (330)
T ss_dssp HHHHHHHHHHTTCCEEEECCCGGGCBCHHHHHHHHHHHCCEEEEEEECCCGGGGGSBCCGGGHHHHCSCSBHHHHHH---
T ss_pred HHHHHHHHHHhCCCEEEECCCCccccCHHHHHHHHHHhCCEEEEeCCCCccccccccccccccccccccccCchhhc---
Confidence 34455667889999999963 345667777888899999877655432110 0000000 00 000000
Q ss_pred CccccccchhHH-HHHHHhcCC-CCCC-----eEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhh
Q 011766 195 SISFNFVSSSQK-ELYAKHHHA-ADGR-----IRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD 267 (478)
Q Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~ 267 (478)
....++.. .++++.... .... +++.++.........+.+.+.+++|++.|++|.+|........+
T Consensus 125 ----~~~~e~l~~~~~~ei~~Gi~~t~vkaGvIEiGld~~~~~~~q~~~f~aq~~~A~~~glPViiH~r~g~~a~~---- 196 (330)
T 3pnz_A 125 ----NTTTDKLTEFVVNEVENGLEGTPYKAGQVKFGTGYNMITPLEEKTIRAVARAHHETKAPIHSHTEAGTMALE---- 196 (330)
T ss_dssp ----TSCHHHHHHHHHHHHHTCSTTSSCCEEEEEEECBTTBCCHHHHHHHHHHHHHHHHHCCCEEEECGGGCCHHH----
T ss_pred ----cCCHHHHHHHHHHHHHhhCCCcCcCcCeEEEEcCCCCCCHHHHHHHHHHHHHHHHHCCeEEEeCCCCcChHH----
Confidence 00001222 222333221 1112 33333333222223345777789999999999999875321111
Q ss_pred hcCCCCchHHHHhhhCCCCCCeeeeeec-cCChhHHHHHHhcCCeEEECccchhh----ccCCCcHHHHHHCC--CcEEE
Q 011766 268 TRKVDHGTVTFLDKIEFLQNNLLSAHTV-WVNHTEIGLLSRAGVKVSHCPASAMR----MLGFAPIKEMLHAD--ICVSL 340 (478)
Q Consensus 268 ~~~~~~~~~~~l~~~~~~~~~~~i~h~~-~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~~~~~~~~~g--v~v~~ 340 (478)
..+++...+....+.++.||. .-+.+....+.+.|..+.+.-..... ......++++++.| -.+.+
T Consensus 197 -------~l~iL~e~~~~~~~vvi~H~~~s~~~e~a~~~l~~G~~i~~~g~~t~~~~~~~~~~~~l~~lv~~g~~drill 269 (330)
T 3pnz_A 197 -------QIEILKQENIPLEYLSIGHMDRNLDPYYHKQVAKTGAFMSFDGIAKIKYAPESARIAAILYLVSEGFEDQILV 269 (330)
T ss_dssp -------HHHHHHHTTCCGGGEEETTGGGSCCHHHHHHHHTTTCEEEECCTTCTTTCCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred -------HHHHHHHcCCCCCeEEEecCCCCCCHHHHHHHHHcCcEEEEccCcccCCCChHHHHHHHHHHHHcCCCCeEEE
Confidence 234455555444567788996 55778888899999988876432110 01123467778777 47999
Q ss_pred cCCCCCC--------CCCcCHH-HHHHHHHHHhcccccccCCCCCCCCCCHHH-HHHHHhHHHHHHcCC
Q 011766 341 GTDGAPS--------NNRMSIV-DEMYLASLINKGREVFANGTTDPAALPAET-VLRMATINGAKSVLW 399 (478)
Q Consensus 341 gsD~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~-al~~~T~~pA~~lgl 399 (478)
.||++.. .+..... ..+.. .+.... ...|+|.++ +.++.|.||+++|++
T Consensus 270 eTD~p~~~~~~~~G~~~~~~~~~~~~~~-~l~~~a---------~~~Gis~ee~i~~~t~~Np~rlf~l 328 (330)
T 3pnz_A 270 SGDTARKTYYKHYGHGPGLEYIAKKWVP-RFIDEA---------NEKGFDGEKLVKKFFVDNPARCFTF 328 (330)
T ss_dssp CCCCCSGGGSHHHHCCSTTTHHHHTHHH-HHHHHH---------HHTTSCHHHHHHHHHTHHHHHHSSC
T ss_pred eCCCCCCCCCCccCCCCCcchHHHHHHH-HHHHHH---------HHcCCCHHHHHHHHHHHhHHHHhcC
Confidence 9998631 1111111 11100 110000 012699998 999999999999998
|
| >3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.54 E-value=4e-05 Score=69.57 Aligned_cols=140 Identities=8% Similarity=-0.016 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEE
Q 011766 234 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVS 313 (478)
Q Consensus 234 ~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~ 313 (478)
.+.+.+.+++|++++++|.+|+-..... ..+++........+ .+.|+..-+.++++++.+.|..+.
T Consensus 113 ~~~F~~ql~lA~e~~lPv~iH~r~a~~~-------------~l~il~~~~~~~~~-~V~H~fsG~~e~a~~~l~~G~yis 178 (287)
T 3rcm_A 113 EKALEAQLTLAAQLRLPVFLHERDASER-------------LLAILKDYRDHLTG-AVVHCFTGEREALFAYLDLDLHIG 178 (287)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESCHHH-------------HHHHHHTTGGGCSC-EEECSCCCCHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcHHH-------------HHHHHHHcCCCCCe-EEEEeCCCCHHHHHHHHHCCcEEE
Confidence 4567788899999999999999764322 22334433222123 355987778899999999999999
Q ss_pred ECccchhhccCCCcHHHHHHCC--CcEEEcCCCCCCCC------------CcCHHHHHHHHHHHhcccccccCCCCCCCC
Q 011766 314 HCPASAMRMLGFAPIKEMLHAD--ICVSLGTDGAPSNN------------RMSIVDEMYLASLINKGREVFANGTTDPAA 379 (478)
Q Consensus 314 ~~p~~~~~~~~~~~~~~~~~~g--v~v~~gsD~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (478)
+....... .....++++++.- -++.+.||++.... ........ +..+... .|
T Consensus 179 ~~g~i~~~-k~~~~l~~~v~~ip~drlLlETD~P~l~p~~~~~~~rg~~n~P~~l~~v--~~~lA~~-----------~g 244 (287)
T 3rcm_A 179 ITGWICDE-RRGTHLHPLVGNIPEGRLMLESDAPYLLPRSLRPKPKSGRNEPAFLPEV--LREVALH-----------RG 244 (287)
T ss_dssp ECGGGGCT-TTCGGGHHHHTTSCTTSEEECCCTTSCCCTTCSSCCTTCCCCGGGHHHH--HHHHHHH-----------HT
T ss_pred ECchhccc-cCHHHHHHHHHhcCCccEEEeccCCccCccccccccCCCcCCHHHHHHH--HHHHHHH-----------hC
Confidence 88543321 1223456666553 46899999863211 00111111 1111100 15
Q ss_pred CCHHHHHHHHhHHHHHHcCCCC
Q 011766 380 LPAETVLRMATINGAKSVLWDN 401 (478)
Q Consensus 380 ls~~~al~~~T~~pA~~lgl~~ 401 (478)
+|.+++.+.+|.|+++++++..
T Consensus 245 ~s~eev~~~~~~N~~rlf~l~~ 266 (287)
T 3rcm_A 245 ESAEHTAAHTTATARDFFQLPA 266 (287)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCC
T ss_pred cCHHHHHHHHHHHHHHHHCCCh
Confidence 9999999999999999999853
|
| >3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.8e-06 Score=79.01 Aligned_cols=228 Identities=11% Similarity=0.071 Sum_probs=127.9
Q ss_pred HHHHHHHHhcCcceeecCC-----ccCHHHHHHHHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccc
Q 011766 128 LLCGIELIHSGVTCFAEAG-----GQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVS 202 (478)
Q Consensus 128 ~~~~~~~l~~GvTtv~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (478)
..-..++..+|+|++++.. +.....+...++..|+..+....++... ..+.+... .++
T Consensus 78 ~~el~~~~~aGv~tiV~~~g~~g~~r~~~~l~~la~~~gi~i~~~tG~y~~~--~~P~~~~~----~~~----------- 140 (365)
T 3rhg_A 78 IFELNNFKELGGKTIVDATGSSSIGRDIRKLKQVAELTGINVVASSGLYIEK--FEGKRLAD----DID----------- 140 (365)
T ss_dssp HHHHHHHHHTTEEEEEECCCSGGGTCCHHHHHHHHHHHCCEEECEECCCCHH--HHGGGGGS----CHH-----------
T ss_pred HHHHHHHHhcCCCeEEEcCCCCCCCCCHHHHHHHHHHHCCcEEEEeCccCCC--CCchhhcC----CHH-----------
Confidence 3455778999999999976 2355666667778888775543332100 00111110 111
Q ss_pred hhHHHHH-HHhcCC-C-----CCCeEEEEeccccccCCH---HHHHHHHHHHHHc-CCceeEec-cCChhhhHHHhhhcC
Q 011766 203 SSQKELY-AKHHHA-A-----DGRIRIWFGIRQIMNATD---RLLLETRDMAREF-KTGIHMHV-AEIPYENQVVMDTRK 270 (478)
Q Consensus 203 ~~~~~~~-~~~~~~-~-----~~~~~~~~~~~~~~~~~~---~~l~~~~~~a~~~-~~~v~~H~-~~~~~~~~~~~~~~~ 270 (478)
+..+.+ ++.... . .+.+.- ++... ..++ +.+.+.+++|++. |++|.+|. .......+
T Consensus 141 -~L~~~~~~ei~~gi~~t~vkag~IGE-iGld~--~~t~~q~~~f~aq~~~A~~~~glPV~iH~~r~~~a~~e------- 209 (365)
T 3rhg_A 141 -AMAKMIDDELNIGIDGTDIRAGMIGE-IGVSP--FFTDGEKNSLRAAALAQNNNPYASMNIHMPGWQRRGDE------- 209 (365)
T ss_dssp -HHHHHHHHHHHTCSTTSSCCCCEEEE-EECCT--TCCHHHHHHHHHHHHHHTTCTTCEEEEECCTTSCCHHH-------
T ss_pred -HHHHHHHHHHHhccccCCceeEEEEE-EEcCC--CCCHHHHHHHHHHHHHHHHhcCCcEEEECCCCCcCHHH-------
Confidence 333232 222211 1 111211 22221 2233 3577777899999 99999997 42222111
Q ss_pred CCCchHHHHhhh-CCCCCCeeeeeec-c-CChhHHHHHHhcCCeEEECccc---hhhc--------cCCCcHHHHHHCCC
Q 011766 271 VDHGTVTFLDKI-EFLQNNLLSAHTV-W-VNHTEIGLLSRAGVKVSHCPAS---AMRM--------LGFAPIKEMLHADI 336 (478)
Q Consensus 271 ~~~~~~~~l~~~-~~~~~~~~i~h~~-~-~~~~~~~~~~~~~~~~~~~p~~---~~~~--------~~~~~~~~~~~~gv 336 (478)
.+..+... +....+.++.||. . -+.+....+.+.|..+.+.-.. .+.. .....++++++.|.
T Consensus 210 ----~l~iL~e~~~~~~~~vvi~H~~rs~~~~e~a~~~l~~G~~I~~~g~g~~~tf~~~~~~~~d~~~a~~l~~li~~g~ 285 (365)
T 3rhg_A 210 ----VLDILLTEMGCDPAKISLAHSDPSGKDIDYQCKMLDRGVWLEFDMIGLDISFPKEGAAPSVMDTVEAVATLIERGY 285 (365)
T ss_dssp ----HHHHHTTTTCCCGGGEEESCCGGGTTCHHHHHHHHHTTCEEEECCTTCCCBCSSSCBCCCHHHHHHHHHHHHHTTC
T ss_pred ----HHHHHHhccCCCCCceEEecCCCCCCCHHHHHHHHhCCCEEEecCCCccccccccccccchHHHHHHHHHHHHhCC
Confidence 23344443 3333456778999 4 5788889999999998876421 0100 11234677888884
Q ss_pred --cEEEcCCCCCCC-------CCcCHH-HHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCC
Q 011766 337 --CVSLGTDGAPSN-------NRMSIV-DEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDN 401 (478)
Q Consensus 337 --~v~~gsD~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~ 401 (478)
.+.+.||++... +..... ....... . ..|+|.+++.++.|.||+++|++.+
T Consensus 286 ~drilleTD~p~l~~~~~~G~~~~~~l~~~~~~~~-~-------------~~Gis~e~i~~~~~~Np~rlf~l~~ 346 (365)
T 3rhg_A 286 GNQIVLSHDVFLKQMWAKNGGNGWGFVPNVFLSLL-A-------------QRGIDKTIIDKLCIDNPANLLAAEN 346 (365)
T ss_dssp GGGEEECCCCCSGGGSGGGTSCTTTHHHHTHHHHH-H-------------HTTCCHHHHHHHTTHHHHHHHHSCC
T ss_pred CCcEEEeCCCCCCCCCCcCCCCCchhHHHHHHHHH-H-------------HcCCCHHHHHHHHHHHHHHHHCCCC
Confidence 799999985321 111111 1111111 1 1369999999999999999999854
|
| >1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.50 E-value=3.8e-06 Score=75.99 Aligned_cols=136 Identities=12% Similarity=-0.017 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEE
Q 011766 235 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 314 (478)
Q Consensus 235 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~ 314 (478)
+.+...+++|.++++++.+|+...... ..+.+...+....+. +.|+..-+.+.++.+.+.|+.+.+
T Consensus 112 ~~f~~~l~~a~~~~lpv~iH~~~a~~~-------------~~~il~~~~~~~~~~-v~H~~~g~~~~~~~~~~~g~yi~~ 177 (264)
T 1xwy_A 112 RAFVAQLRIAADLNMPVFMHCRDAHER-------------FMTLLEPWLDKLPGA-VLHCFTGTREEMQACVAHGIYIGI 177 (264)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESCHHH-------------HHHHHGGGGGGSSCE-EECSCCCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhCCcEEEEcCCchHH-------------HHHHHHhcCCCCCcE-EEEccCCCHHHHHHHHHCCeEEEE
Confidence 347778899999999999998643211 223333333212334 449866677888888889999888
Q ss_pred CccchhhccCCCcHHHHHHCC--CcEEEcCCCCCCCCC------------cCHH-HHHHHHHHHhcccccccCCCCCCCC
Q 011766 315 CPASAMRMLGFAPIKEMLHAD--ICVSLGTDGAPSNNR------------MSIV-DEMYLASLINKGREVFANGTTDPAA 379 (478)
Q Consensus 315 ~p~~~~~~~~~~~~~~~~~~g--v~v~~gsD~~~~~~~------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (478)
...... ......++++++.. -++.++||++..... ...+ ..+...... .+
T Consensus 178 ~g~~~~-~~~~~~l~~~~~~~~~drll~eTD~P~~~~~~~~~~~~g~~n~p~~~~~~~~~~a~~--------------~g 242 (264)
T 1xwy_A 178 TGWVCD-ERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSSRRNEPAHLPHILQRIAHW--------------RG 242 (264)
T ss_dssp CGGGGC-TTTSHHHHHHGGGSCGGGEEECCCTTSCCCTTCTTCCCSSCCCGGGHHHHHHHHHHH--------------HT
T ss_pred CccccC-CcCcHHHHHHHHhCCHHHEEEecCCCCcCccccccccCCCCCchHHHHHHHHHHHHH--------------HC
Confidence 753220 11123456666553 379999999642110 0111 111111111 15
Q ss_pred CCHHHHHHHHhHHHHHHcCC
Q 011766 380 LPAETVLRMATINGAKSVLW 399 (478)
Q Consensus 380 ls~~~al~~~T~~pA~~lgl 399 (478)
+|.+++.+..+.|+++++++
T Consensus 243 ~~~e~~~~~~~~Na~rl~~l 262 (264)
T 1xwy_A 243 EDAAWLAATTDANVKTLFGI 262 (264)
T ss_dssp CCHHHHHHHHHHHHHHHHCC
T ss_pred cCHHHHHHHHHHHHHHHhCc
Confidence 89999999999999999987
|
| >1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.47 E-value=2.6e-05 Score=70.50 Aligned_cols=137 Identities=13% Similarity=0.137 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEE
Q 011766 234 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVS 313 (478)
Q Consensus 234 ~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~ 313 (478)
.+.+...+++|.++|+++.+|+...... ..+.+...+....+.+ .|+...+.+.+..+.+.|+.+.
T Consensus 110 ~~~~~~~~~~a~~~~~pv~iH~~~~~~~-------------~~~~l~~~~~p~~~~v-~H~~~~~~~~~~~~~~~g~~~~ 175 (265)
T 1yix_A 110 QESFIHHIQIGRELNKPVIVHTRDARAD-------------TLAILREEKVTDCGGV-LHCFTEDRETAGKLLDLGFYIS 175 (265)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESCHHH-------------HHHHHHHTTGGGTCEE-ETTCCSCHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCchHH-------------HHHHHHhcCCCCCCEE-EEcCCCCHHHHHHHHHCCcEEE
Confidence 3457788899999999999999753221 2233443322223444 4998878888999988999998
Q ss_pred ECccchhhccCCCcHHHHHHC-C-CcEEEcCCCCCCC---------CCcCHHHHHHHHHHHhcccccccCCCCCCCCCCH
Q 011766 314 HCPASAMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSN---------NRMSIVDEMYLASLINKGREVFANGTTDPAALPA 382 (478)
Q Consensus 314 ~~p~~~~~~~~~~~~~~~~~~-g-v~v~~gsD~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 382 (478)
++..... .....++.+++. + -++.++||++... .+..+...+...... .++|.
T Consensus 176 ~sg~~~~--~~~~~~~~~~~~~~~drll~~TD~P~~~~~~~~g~~~~~~~l~~~~~~l~~~--------------~~~~~ 239 (265)
T 1yix_A 176 FSGIVTF--RNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVL--------------KGVAV 239 (265)
T ss_dssp ECGGGGS--TTCHHHHHHHHHSCGGGEEECCCBTSCCCTTCTTSCCCGGGHHHHHHHHHHH--------------HTSCH
T ss_pred ECCcccc--CchHHHHHHHHhCChHHEEEecCCCCCCCcccCCCCCchHHHHHHHHHHHHH--------------hCcCH
Confidence 8864322 112345566655 4 5799999986431 111122222211111 15899
Q ss_pred HHHHHHHhHHHHHHcCCC
Q 011766 383 ETVLRMATINGAKSVLWD 400 (478)
Q Consensus 383 ~~al~~~T~~pA~~lgl~ 400 (478)
++..+.++.|++++++++
T Consensus 240 ~~~~~i~~~Na~rl~~l~ 257 (265)
T 1yix_A 240 EELAQVTTDNFARLFHID 257 (265)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhCcC
Confidence 999999999999999984
|
| >4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-06 Score=82.19 Aligned_cols=139 Identities=14% Similarity=0.107 Sum_probs=98.1
Q ss_pred CCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccC--ChhHHHHHHhcC
Q 011766 232 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV--NHTEIGLLSRAG 309 (478)
Q Consensus 232 ~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~--~~~~~~~~~~~~ 309 (478)
.+++....+++.|++.|+++.+|+.+.....+. ..+.+.. ++. ..|.||..+ +++.++++++.+
T Consensus 194 ~p~~~f~~~f~~ar~~Gl~~t~HAGE~~~p~~~----------i~~al~~---lga-~RIgHG~~~~~d~~L~~~l~~~~ 259 (380)
T 4gxw_A 194 RPPELFWKAYRDARAAGFRTTAHAGEFGMPWRN----------VETAVDL---LHV-DRVDHGYTIVDNPELCARYAERG 259 (380)
T ss_dssp CCGGGGHHHHHHHHHTTCEEEEEESCTTCCHHH----------HHHHHHT---SCC-SEEEECGGGGGCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCCeeeeccccCCchHH----------HHHHHHH---cCC-cccccceeeccChHHHHHHHHhC
Confidence 345567788899999999999999885321111 1122222 222 348999987 677899999999
Q ss_pred CeEEECccchhhccC--------CCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCC
Q 011766 310 VKVSHCPASAMRMLG--------FAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALP 381 (478)
Q Consensus 310 ~~~~~~p~~~~~~~~--------~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 381 (478)
+.+.+||.+|..... ..|++.+++.|++++++||.+... ..++..++..+... .+++
T Consensus 260 I~lEvCP~SN~~l~~v~~~~~~~~HP~~~l~~~Gv~vtinTDDp~~f-~t~Ls~Ey~~~~~~--------------~gls 324 (380)
T 4gxw_A 260 IVFTVVPTNSYYLRTLPPDQWAERHPMRKMPGLGLKIHPNTDDPTLH-KVNPSEAWELMFSH--------------FGFT 324 (380)
T ss_dssp CEEEECTTCHHHHHHSCTTTHHHHCGGGGTGGGTCEEEECCBSHHHH-TCCHHHHHHHHHHT--------------SCCC
T ss_pred ceeEECCcchhhhcccccccccccChHHHHHHCCCeEEECCCCchhh-CCCHHHHHHHHHHH--------------hCcC
Confidence 999999999976521 248999999999999999986432 23466665544422 2589
Q ss_pred HHHHHHHHhHHHHHHcCCC
Q 011766 382 AETVLRMATINGAKSVLWD 400 (478)
Q Consensus 382 ~~~al~~~T~~pA~~lgl~ 400 (478)
.++.. .++.|+.+...++
T Consensus 325 ~~dl~-~l~~nsi~~sF~~ 342 (380)
T 4gxw_A 325 IADLK-QFMLNGIDGAWVD 342 (380)
T ss_dssp HHHHH-HHHHHHHHHSSSC
T ss_pred HHHHH-HHHHHHHHHHcCC
Confidence 99865 5667888877664
|
| >3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=98.19 E-value=1.7e-05 Score=70.40 Aligned_cols=133 Identities=16% Similarity=0.020 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHcCCcee-EeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEE
Q 011766 235 RLLLETRDMAREFKTGIH-MHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVS 313 (478)
Q Consensus 235 ~~l~~~~~~a~~~~~~v~-~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~ 313 (478)
+.+.+.+++|+++++||. +|+-..... ..+.+..... ....+.||..-+.++++++.+.|..+.
T Consensus 104 ~~F~~ql~lA~e~~lPviSiH~r~a~~~-------------~~~il~~~~~--~~~~v~H~fsG~~e~a~~~l~~G~yis 168 (254)
T 3gg7_A 104 AVFQHILRRCEDHGGRILSIHSRRAESE-------------VLNCLEANPR--SGTPILHWYSGSVTELRRAISLGCWFS 168 (254)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHH-------------HHHHHHHCGG--GEEEEEETCCSCHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCcHHH-------------HHHHHHHcCC--CCcEEEEeCCCCHHHHHHHHcCCcEEE
Confidence 347777899999999997 999764322 2334444321 112356988878899999999999998
Q ss_pred ECccchhhccCCCcHHHHHHCC--CcEEEcCCCCCCC-----CCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHH
Q 011766 314 HCPASAMRMLGFAPIKEMLHAD--ICVSLGTDGAPSN-----NRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 386 (478)
Q Consensus 314 ~~p~~~~~~~~~~~~~~~~~~g--v~v~~gsD~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al 386 (478)
+.+... ....++++++.- -++.+.||++... +........ +..+... .++|.+++.
T Consensus 169 ~~g~~~----~~~~~~~~v~~ip~drlLlETD~P~~~~rg~~n~P~~v~~v--~~~iA~~-----------~g~~~ee~~ 231 (254)
T 3gg7_A 169 VGPTMV----RTQKGAALIRSMPRDRVLTETDGPFLELDGQAALPWDVKSV--VEGLSKI-----------WQIPASEVE 231 (254)
T ss_dssp ECHHHH----TSHHHHHHHHHSCGGGEEECCCTTTSEETTEECCGGGHHHH--HHHHHHH-----------HTSCHHHHH
T ss_pred ECcccC----chHHHHHHHHHcCCCeEEEeCCCCccccCCCCCCHHHHHHH--HHHHHHH-----------hCcCHHHHH
Confidence 886543 122345555442 3689999986421 111111111 1111110 158999999
Q ss_pred HHHhHHHHHHcCC
Q 011766 387 RMATINGAKSVLW 399 (478)
Q Consensus 387 ~~~T~~pA~~lgl 399 (478)
+..+.|+.+++++
T Consensus 232 ~~~~~N~~~lf~~ 244 (254)
T 3gg7_A 232 RIVKENVSRLLGT 244 (254)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCC
Confidence 9999999999988
|
| >3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor binding domains, glyco hydrolase, growth factor, secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=8.5e-06 Score=79.33 Aligned_cols=117 Identities=12% Similarity=0.150 Sum_probs=80.8
Q ss_pred CHHHHHHHHHH--HHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCC--hhHHHHHHhc
Q 011766 233 TDRLLLETRDM--AREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN--HTEIGLLSRA 308 (478)
Q Consensus 233 ~~~~l~~~~~~--a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~--~~~~~~~~~~ 308 (478)
+++....+++. +++.|+++.+|+.+...... .....+.+.. .++. ..|+||..+. ++.++++++.
T Consensus 307 p~~~f~~~f~~~~A~~~gl~~t~HAGE~~~~g~---------~~~~~i~~Al-~Lga-~RIgHGv~l~~dp~l~~~l~~~ 375 (508)
T 3lgd_A 307 SLHDYKEALMIPAKDGVKLPYFFHAGETDWQGT---------SIDRNILDAL-MLNT-TRIGHGFALSKHPAVRTYSWKK 375 (508)
T ss_dssp CTGGGHHHHTHHHHTTCCCCBCCEECCSSCCSS---------TTTTHHHHHH-HTTC-SSEEECTTGGGCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcCCceeeecccccCCCC---------CcHHHHHHHH-hcCC-ceeeeeEecCccHHHHHHHHhc
Confidence 44556666777 78899999999988643110 0011122222 1332 3479999996 7899999999
Q ss_pred CCeEEECccchhhcc-----CCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHH
Q 011766 309 GVKVSHCPASAMRML-----GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLA 360 (478)
Q Consensus 309 ~~~~~~~p~~~~~~~-----~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~ 360 (478)
++.+.+||.+|.... ...|++.++++|++|+++||.+...+...+..+...+
T Consensus 376 ~I~levCP~SN~~l~~v~~~~~hP~~~ll~~Gv~V~l~TDdp~~f~~~~Ls~Ey~~a 432 (508)
T 3lgd_A 376 DIPIEVCPISNQVLKLVSDLRNHPVATLMATGHPMVISSDDPAMFGAKGLSYDFYEV 432 (508)
T ss_dssp TCCEEECHHHHHHTTSCSSGGGCTHHHHHHTTCCEEECCBSHHHHTCCTTHHHHHHH
T ss_pred CCeEEECcchHHHhCCCCCcccChHHHHHHCCCcEEEcCCCccccCCCchHHHHHHH
Confidence 999999999998773 2369999999999999999986543222344554444
|
| >2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00016 Score=66.46 Aligned_cols=140 Identities=9% Similarity=-0.002 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEE
Q 011766 235 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 314 (478)
Q Consensus 235 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~ 314 (478)
+.+...+++|++++++|.+|+...... ..+++..... .....+.|+..-+.+.++.+.+.|..+.+
T Consensus 127 ~~f~~ql~lA~~~~lPv~iH~r~a~~~-------------~~~il~~~~~-~~~~~i~H~f~g~~~~~~~~l~~g~yi~~ 192 (301)
T 2xio_A 127 KYFEKQFELSEQTKLPMFLHCRNSHAE-------------FLDITKRNRD-RCVGGVVHSFDGTKEAAAALIDLDLYIGF 192 (301)
T ss_dssp HHHHHTHHHHHHHCCCEEEEEESCHHH-------------HHHHHHHTGG-GSSCEEETTCCCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhCCcEEEEecCchHH-------------HHHHHHhccC-CCCcEEEEccCCCHHHHHHHHhcCcEEEE
Confidence 457777899999999999999643221 2233443321 11235689877688888899999999988
Q ss_pred CccchhhccCCCcHHHHHHCC--CcEEEcCCCCCCC------------------------------CCcCHHHHHHHHHH
Q 011766 315 CPASAMRMLGFAPIKEMLHAD--ICVSLGTDGAPSN------------------------------NRMSIVDEMYLASL 362 (478)
Q Consensus 315 ~p~~~~~~~~~~~~~~~~~~g--v~v~~gsD~~~~~------------------------------~~~~~~~~~~~~~~ 362 (478)
... ... ....+++++.. -++.++||++... +....... .+..
T Consensus 193 ~g~-~~~---~~~~~~~~~~~p~drlLleTD~P~~~~~~~~~~~~~l~~~~p~~~~~~~g~~~~~~n~p~~v~~--~~~~ 266 (301)
T 2xio_A 193 NGC-SLK---TEANLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIRTAFPTKKKWESGHCLKDRNEPCHIIQ--ILEI 266 (301)
T ss_dssp CGG-GSS---SHHHHHHHHTSCGGGEEECCCTTSCCCCTTSTTGGGCCCCCCEESSCCTTSEETTCCCGGGHHH--HHHH
T ss_pred ccc-ccC---ChHHHHHHHhCChHHEEEecCCCcccccccccccccccccCcccccccccccCCCCCChHHHHH--HHHH
Confidence 754 111 11123555543 4689999986421 00111111 1111
Q ss_pred HhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCcccc
Q 011766 363 INKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSL 406 (478)
Q Consensus 363 ~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l 406 (478)
+... .++|.++..+..+.|+++++++.. +|.|
T Consensus 267 ia~l-----------~g~~~e~~~~~~~~Na~rlf~~~~-~~~~ 298 (301)
T 2xio_A 267 MSAV-----------RDEDPLELANTLYNNTIKVFFPVI-AENL 298 (301)
T ss_dssp HHHH-----------HTCCHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHH-----------HCcCHHHHHHHHHHHHHHHhCchh-hhhc
Confidence 1110 159999999999999999999853 4543
|
| >4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00031 Score=64.35 Aligned_cols=139 Identities=7% Similarity=-0.036 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCC---------hhHH
Q 011766 232 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN---------HTEI 302 (478)
Q Consensus 232 ~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~---------~~~~ 302 (478)
...+.+...++++.++|+++.+|...... .. ....+... ..+.++.|+.... .+.+
T Consensus 134 ~~~~~~~~~~~~a~~~glpv~iH~~~~~l--~~----------~~~~l~~~---p~~~Vi~H~g~p~~~~g~~~~~~~~~ 198 (294)
T 4i6k_A 134 LNTPDWQKFLRNVESLNWQVELHAPPKYL--VQ----------LLPQLNEY---SFDVVIDHFGRVDPVKGIEDPDYQKF 198 (294)
T ss_dssp SSSHHHHHHHHHHHHTTCEEEEECCHHHH--HH----------HHHHHTTS---SSCEEESGGGCCCTTTCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHcCCEEEEeeCcchH--HH----------HHHHHHHC---CCCEEEECCCCCCCCCCCCCHHHHHH
Confidence 45578889999999999999999964221 00 12233322 2467788887642 1233
Q ss_pred HHHHhc-CCeEEECccchhhcc------CCCcHHHHHH-CC-CcEEEcCCCCCCCCC--cCHHHHHHHHHHHhccccccc
Q 011766 303 GLLSRA-GVKVSHCPASAMRML------GFAPIKEMLH-AD-ICVSLGTDGAPSNNR--MSIVDEMYLASLINKGREVFA 371 (478)
Q Consensus 303 ~~~~~~-~~~~~~~p~~~~~~~------~~~~~~~~~~-~g-v~v~~gsD~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 371 (478)
..+.+. |+.+.++-....... ....++.+++ .| -++.+|||++..... .+....+......
T Consensus 199 ~~l~~~~nv~~k~Sg~~~~~~~~~~~~~~~~~l~~~~~~~g~dRll~gSD~P~~~~~~~~~y~~~~~~l~~~-------- 270 (294)
T 4i6k_A 199 LSLLNVKQHWIKVSGFYRLGATPSNINIAQQAYNIFKEKGFLHKLIWGSDWPHTQHESLITYEDAIKAFKQI-------- 270 (294)
T ss_dssp HHHCCTTTEEEECCCGGGSSSTTHHHHHHHHHHHHHHHHTCGGGEECCCCBTCTTCTTTCCHHHHHHHHHHH--------
T ss_pred HHHHhCCCEEEEecccccccccCCCchhhHHHHHHHHHHhCcccEEEeCCCCCCCCcCCCCHHHHHHHHHHH--------
Confidence 333333 555554422111100 0123445443 44 479999999765322 1222211111111
Q ss_pred CCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 011766 372 NGTTDPAALPAETVLRMATINGAKSVLWD 400 (478)
Q Consensus 372 ~~~~~~~~ls~~~al~~~T~~pA~~lgl~ 400 (478)
++|.++.-+..+.|++++++++
T Consensus 271 -------~~~~~~~~~i~~~NA~rl~~l~ 292 (294)
T 4i6k_A 271 -------VFDKHEQCLILNQNPTELFGFS 292 (294)
T ss_dssp -------CCCHHHHHHHHTHHHHHHHTC-
T ss_pred -------CCCHHHHHHHHHHCHHHHhCCC
Confidence 2788888889999999999984
|
| >1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00042 Score=62.55 Aligned_cols=137 Identities=13% Similarity=0.114 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEE
Q 011766 234 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVS 313 (478)
Q Consensus 234 ~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~ 313 (478)
.+.+...+++|.++|+++.+|....... ..+.+........+.++ |+..-+.+.+..+.+.|+.+.
T Consensus 119 ~~~f~~~~~~a~~~~lPv~iH~~~~~~~-------------~~~il~~~p~~~~~~I~-H~~~g~~~~~~~~~~~g~y~~ 184 (268)
T 1j6o_A 119 KRVFVEQIELAGKLNLPLVVHIRDAYSE-------------AYEILRTESLPEKRGVI-HAFSSDYEWAKKFIDLGFLLG 184 (268)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESCHHH-------------HHHHHHHSCCCSSCEEE-TTCCSCHHHHHHHHHHTEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCchHHH-------------HHHHHHhcCCCCCCEEE-EcCCCCHHHHHHHHHCCCeEE
Confidence 4467888899999999999998743221 23344443322334556 987777888888888888888
Q ss_pred ECccchhhccCCCcHHHHHHC-C-CcEEEcCCCCCCCC--------CcCHHHHHHHHHHHhcccccccCCCCCCCCCCHH
Q 011766 314 HCPASAMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSNN--------RMSIVDEMYLASLINKGREVFANGTTDPAALPAE 383 (478)
Q Consensus 314 ~~p~~~~~~~~~~~~~~~~~~-g-v~v~~gsD~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~ 383 (478)
+....... ....++.+++. + -++.++||++.... ....+.... ..... ..++|.+
T Consensus 185 ~sg~~~~~--~~~~l~~~i~~~~~driL~eTD~P~~~~~~~~g~~n~p~~~~~~~--~~la~-----------~~~~~~e 249 (268)
T 1j6o_A 185 IGGPVTYP--KNEALREVVKRVGLEYIVLETDCPFLPPQPFRGKRNEPKYLKYVV--ETISQ-----------VLGVPEA 249 (268)
T ss_dssp ECGGGGCT--TCHHHHHHHHHHCGGGEEECCCBTSCCCGGGTTSCCCGGGHHHHH--HHHHH-----------HHTSCHH
T ss_pred eccccccc--chHHHHHHHHhCChhhEEEecCCCCCCCcccCCCCCchHHHHHHH--HHHHH-----------HhCcCHH
Confidence 77543211 12235555544 3 57999999864311 111111111 11100 0148999
Q ss_pred HHHHHHhHHHHHHcCC
Q 011766 384 TVLRMATINGAKSVLW 399 (478)
Q Consensus 384 ~al~~~T~~pA~~lgl 399 (478)
+.-+..+.|+++++++
T Consensus 250 ~~~~i~~~Na~rlf~l 265 (268)
T 1j6o_A 250 KVDEATTENARRIFLE 265 (268)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999999987
|
| >2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00079 Score=60.56 Aligned_cols=140 Identities=14% Similarity=0.063 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHh-cCCe
Q 011766 233 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSR-AGVK 311 (478)
Q Consensus 233 ~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~-~~~~ 311 (478)
..+.+...+++|.++|+++.+|....... ...++........+. +.|+..-+.+.+..+.+ .|+.
T Consensus 107 ~~~~~~~~~~~a~~~~~pv~iH~~~~~~~-------------~~~~l~~~p~~~~~~-i~H~~~g~~~~~~~~l~~~~~y 172 (265)
T 2gzx_A 107 QKEVFRKQIALAKRLKLPIIIHNREATQD-------------CIDILLEEHAEEVGG-IMHSFSGSPEIADIVTNKLNFY 172 (265)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEESCHHH-------------HHHHHHHTTGGGTCE-EETTCCSCHHHHHHHHHTSCCE
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecccHHH-------------HHHHHHhcCCCCCcE-EEEcCCCCHHHHHHHHHHCCce
Confidence 34557888999999999999999654221 223444433112234 45766556666766666 7888
Q ss_pred EEECccchhhccCCCcHHHHHHC-C-CcEEEcCCCCCCCCC--------cCHHHHHHHHHHHhcccccccCCCCCCCCCC
Q 011766 312 VSHCPASAMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSNNR--------MSIVDEMYLASLINKGREVFANGTTDPAALP 381 (478)
Q Consensus 312 ~~~~p~~~~~~~~~~~~~~~~~~-g-v~v~~gsD~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 381 (478)
+.+...... .....++.+++. | -++.++||++..... ........ ..... ..++|
T Consensus 173 ~~~sg~~~~--~~~~~~~~~i~~~~~dril~gSD~P~~~~~~~~g~~~~~~~~~~~~--~~l~~-----------~~~~~ 237 (265)
T 2gzx_A 173 ISLGGPVTF--KNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGKRNEPARVTLVA--EQIAE-----------LKGLS 237 (265)
T ss_dssp EEECGGGGC--SSCCHHHHHHHHSCTTTEEECCCTTSCCCTTCTTSCCCGGGHHHHH--HHHHH-----------HTTCC
T ss_pred EEecceeec--CCcHHHHHHHHhCChhhEEEccCCCCCCCcccCCCCCChHHHHHHH--HHHHH-----------HhCCC
Confidence 887744221 122346666654 3 589999998643110 01111111 11100 01589
Q ss_pred HHHHHHHHhHHHHHHcCCCC
Q 011766 382 AETVLRMATINGAKSVLWDN 401 (478)
Q Consensus 382 ~~~al~~~T~~pA~~lgl~~ 401 (478)
.++.-+..+.|+++++++.+
T Consensus 238 ~~~~~~i~~~Na~rl~~~~~ 257 (265)
T 2gzx_A 238 YEEVCEQTTKNAEKLFNLNS 257 (265)
T ss_dssp HHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhCCch
Confidence 99999999999999999853
|
| >3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0019 Score=59.42 Aligned_cols=137 Identities=7% Similarity=-0.000 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHH-cCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEE
Q 011766 235 RLLLETRDMARE-FKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVS 313 (478)
Q Consensus 235 ~~l~~~~~~a~~-~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~ 313 (478)
+.+.+-+++|++ ++++|.+|+-+.... ..+++........+. +.||..=+.++++++.+.|..+.
T Consensus 154 ~~F~~ql~lA~e~~~lPviiH~r~A~~d-------------~l~iL~~~~~~~~~g-ViH~FsGs~e~a~~~l~lG~yis 219 (325)
T 3ipw_A 154 SGYRTLSILHQKYPYLPFFFHCRKSWSD-------------LCQLNKELGYNGCKG-VVHCFDGTEEEMNQILNEGWDIG 219 (325)
T ss_dssp HHHHHTHHHHHHCTTCCEEEEEESCHHH-------------HHHHHHHTTCTTSCE-EECSCCCCHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHhhCCeEEEEeCchHHH-------------HHHHHHhcCCCCCcE-EEEECCCCHHHHHHHHhcCcEEe
Confidence 346666789999 999999999764322 334455443222233 45998889999999999999999
Q ss_pred ECccchhhccCCCcHHHHHHC-C-CcEEEcCCCCCCCC------------------------------CcCHHHHHHHHH
Q 011766 314 HCPASAMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSNN------------------------------RMSIVDEMYLAS 361 (478)
Q Consensus 314 ~~p~~~~~~~~~~~~~~~~~~-g-v~v~~gsD~~~~~~------------------------------~~~~~~~~~~~~ 361 (478)
+.... .. ..... +++.. . -++.+-||++.... ...+..-...+.
T Consensus 220 ~~G~~-~k--~~~~~-~~v~~iPldrlLlETDaP~l~~~~~~~~~~~~~~p~p~r~~~k~~~~~~~g~rNeP~~v~~v~~ 295 (325)
T 3ipw_A 220 VTGNS-LQ--SIELL-NVMKQIPIERLHIETDCPYCGIKKTSAGFKYLKEKDFGVKVEKYQRNKYVQRRNEPSNIIDIAI 295 (325)
T ss_dssp ECSGG-GS--SHHHH-HHHTTSCGGGEEECCCTTSCCCCTTSGGGGGCSSCCCCBCGGGCCTTSCBTTCCCGGGHHHHHH
T ss_pred eCccc-cC--cHHHH-HHHHhCCcccEEEeCCCccccccccccchhcccccCccccccccccccccCCcCcHHHHHHHHH
Confidence 88752 11 11112 33332 1 35888999863210 000111111111
Q ss_pred HHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 011766 362 LINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWD 400 (478)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~ 400 (478)
.+..- .++|.+++.+..+.|.-+++++.
T Consensus 296 ~iA~l-----------~g~~~eeva~~t~~Na~~lF~~~ 323 (325)
T 3ipw_A 296 IMSSI-----------KHISLFEFVNKVYSNSMNMYFPT 323 (325)
T ss_dssp HHHHH-----------HTCCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHh-----------hCcCHHHHHHHHHHHHHHHhCcC
Confidence 11111 15999999999999999999874
|
| >2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; TIM-barrel protein., structural genomics, PSI, protein struc initiative; 2.61A {Pseudomonas putida} SCOP: c.1.9.15 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00094 Score=60.92 Aligned_cols=139 Identities=11% Similarity=-0.022 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCC---------hhHH
Q 011766 232 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN---------HTEI 302 (478)
Q Consensus 232 ~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~---------~~~~ 302 (478)
...+.+....++|.++|+++.+|....... . ....+.... .+.++.|+.... .+.+
T Consensus 121 ~~~~~~~~~~~~a~~~~lpv~iH~~~~~~~-~-----------~~~~~~~~p---l~~vi~H~g~~~~~~~~~~~~~~~~ 185 (288)
T 2ffi_A 121 LTGAQWRPLLERIGEQGWHVELHRQVADIP-V-----------LVRALQPYG---LDIVIDHFGRPDARRGLGQPGFAEL 185 (288)
T ss_dssp TTSTTTHHHHHHHHHHTCEEEECSCTTTHH-H-----------HHHHHTTTT---CCEEESGGGSCCTTSCTTCTTHHHH
T ss_pred cccHHHHHHHHHHHHCCCeEEEeechhhHH-H-----------HHHHHHHCC---CCEEEECCCCCCCCCCCCChhHHHH
Confidence 344568888999999999999998753210 0 223344433 357778987654 2344
Q ss_pred HHHHhc-CCeEEECccchhhcc-------CCCcHHHHHHC-C-CcEEEcCCCCCCCCC--cCHHHHHHHHHHHhcccccc
Q 011766 303 GLLSRA-GVKVSHCPASAMRML-------GFAPIKEMLHA-D-ICVSLGTDGAPSNNR--MSIVDEMYLASLINKGREVF 370 (478)
Q Consensus 303 ~~~~~~-~~~~~~~p~~~~~~~-------~~~~~~~~~~~-g-v~v~~gsD~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 370 (478)
..+.+. ++.+.++........ ....++.+++. | -++.+|||++..... .++...+......
T Consensus 186 ~~l~~~~n~y~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~g~drll~gSD~P~~~~~~~~~~~~~~~~~~~~------- 258 (288)
T 2ffi_A 186 LTLSGRGKVWVKVSGIYRLQGSPEENLAFARQALCALEAHYGAERLMWGSDWPHTQHESEVSFGSAVEQFEAL------- 258 (288)
T ss_dssp TTCCCCSCEEEEEECGGGSSSCHHHHHHHHHHHHHHHHHHTCGGGEEEECCTTCTTCTTTCCHHHHHHHHHHH-------
T ss_pred HHHHhCCCEEEEeCcchhhccccCCCHHHHHHHHHHHHHHhCCCceEEecCCCCCCCCCCCCHHHHHHHHHHH-------
Confidence 333333 444444322111000 00234555554 5 589999999654211 1221111111111
Q ss_pred cCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 011766 371 ANGTTDPAALPAETVLRMATINGAKSVLWD 400 (478)
Q Consensus 371 ~~~~~~~~~ls~~~al~~~T~~pA~~lgl~ 400 (478)
++|.++.-+....|++++++++
T Consensus 259 --------~~~~~~~~~i~~~NA~rl~~l~ 280 (288)
T 2ffi_A 259 --------GCSAQLRQALLLDTARALFGFE 280 (288)
T ss_dssp --------CCCHHHHHHHHTHHHHHHTTCC
T ss_pred --------CCCHHHHHHHHHHCHHHHhCcc
Confidence 2588888889999999999985
|
| >3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.20A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00037 Score=62.28 Aligned_cols=135 Identities=13% Similarity=0.118 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHcCCceeEeccCCh---hhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCC
Q 011766 234 DRLLLETRDMAREFKTGIHMHVAEIP---YENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGV 310 (478)
Q Consensus 234 ~~~l~~~~~~a~~~~~~v~~H~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~ 310 (478)
.+.+.+.+++|+++++++.+|+.... ...+ ..+++...+....+.++.|+ +.+.++++.+.|.
T Consensus 109 ~~~f~~ql~lA~e~~lPv~iH~r~~~~~~a~~~-----------~~~il~~~~~~~~~~vi~H~---~~~~a~~~l~~G~ 174 (261)
T 3guw_A 109 IEVLKSQLELAKRMDVPCIIHTPRGNKLKATRK-----------TLEILESLDFPADLAVIDHV---NFETLDMVLETEY 174 (261)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECCSSSTTHHHHH-----------HHHHHHHTTCCTTSEEEESC---CTTTHHHHHTSSS
T ss_pred HHHHHHHHHHHHHhCCeEEEEcCCCcccchHHH-----------HHHHHHHcCCCCCCEEEEeC---CHHHHHHHHhCCE
Confidence 44677888999999999999996531 1111 33455555443344567798 6788889999999
Q ss_pred eEEEC--ccchhhccCCCcHHHHHHC-C-CcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHH
Q 011766 311 KVSHC--PASAMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 386 (478)
Q Consensus 311 ~~~~~--p~~~~~~~~~~~~~~~~~~-g-v~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al 386 (478)
.+.+. |..... ...+++++. + -++.+.||++...+ .+..-.+....+. . -.|++. ..
T Consensus 175 yis~~~~pg~~t~----~~~~~~v~~ipldrlLlETD~P~~pn--~P~~v~~~~~~la-----~------~~g~~~--v~ 235 (261)
T 3guw_A 175 WIGLTVQPGKLSA----EDAARIVAEHGPERFMLNSDAGYRDV--EITTVAEAAVKIE-----E------AVGREE--ME 235 (261)
T ss_dssp EEEEECC-----------CCTTGGGGCC-CCEEEECCCCCC--------CCCCTTHHH-----H------HCTTGG--GG
T ss_pred EEEecCCCCcccH----HHHHHHHHhCCcceEEEecCCCCCCC--CHHHHHHHHHHHH-----h------hCChhH--HH
Confidence 88776 221111 111233322 2 46899999864211 0100000000000 0 013554 67
Q ss_pred HHHhHHHHHHcCCCC
Q 011766 387 RMATINGAKSVLWDN 401 (478)
Q Consensus 387 ~~~T~~pA~~lgl~~ 401 (478)
+..+.|+.+++++..
T Consensus 236 ~~~~~Na~rlf~~~~ 250 (261)
T 3guw_A 236 KVARENARKFLRVLE 250 (261)
T ss_dssp HHHHSSHHHHTTC--
T ss_pred HHHHHHHHHHHCCCc
Confidence 788899999999854
|
| >3cjp_A Predicted amidohydrolase, dihydroorotase family; structural genomics, protein structure initiative; 1.85A {Clostridium acetobutylicum atcc 824} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.062 Score=48.17 Aligned_cols=134 Identities=9% Similarity=-0.008 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHHc-CCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCCh-hHHHHHHh-cC
Q 011766 233 TDRLLLETRDMAREF-KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH-TEIGLLSR-AG 309 (478)
Q Consensus 233 ~~~~l~~~~~~a~~~-~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~-~~~~~~~~-~~ 309 (478)
..+.+....++|.++ |+++.+|......... .. ....++.... ..+.++.|+..... +.++.+.+ .|
T Consensus 128 ~~~~~~~~~~~a~~~~~lpv~iH~~~~~~~~~-~~-------~~~~~l~~~p--~l~iv~~H~G~~~~~~~~~~~~~~~~ 197 (272)
T 3cjp_A 128 QIKSLKPIFKYSMDSGSLPIWIHAFNPLVLQD-IK-------EIAELCKAFP--KVPVILGHMGGSNWMTAVELAKEIQN 197 (272)
T ss_dssp CGGGGHHHHHHHHHTTCCCEEECCSTTCCHHH-HH-------HHHHHHHHST--TSCEEEGGGGGGGHHHHHHHHHHCTT
T ss_pred ccHHHHHHHHHHHhccCCcEEEeCCCCCcccc-HH-------HHHHHHHHCC--CceEEEECCCCccHHHHHHHHHhCCC
Confidence 446788899999999 9999999974211000 00 0223444432 23466777765432 23333443 46
Q ss_pred CeEEECccchhhccCCCcHHHHHH-CCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHH
Q 011766 310 VKVSHCPASAMRMLGFAPIKEMLH-ADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRM 388 (478)
Q Consensus 310 ~~~~~~p~~~~~~~~~~~~~~~~~-~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~ 388 (478)
+.+.++..... ..++.+++ .+-++.+|||++.. .+....... .. .++|.++.-+.
T Consensus 198 ~y~~~s~~~~~-----~~~~~~~~~~~dril~gSD~P~~----~~~~~~~~~--~~-------------~~l~~~~~~~i 253 (272)
T 3cjp_A 198 LYLDTSAYFST-----FVLKIVINELPLKCIFGTDMPFG----DLQLSIEAI--KK-------------MSNDSYVANAV 253 (272)
T ss_dssp EEEECTTCSCH-----HHHHHHHHHSTTTEECCCCTTSS----CHHHHHHHH--HH-------------HCSSHHHHHHH
T ss_pred EEEEecccccH-----HHHHHHHHhCCCeEEEeCCCCCC----ChHHHHHHH--Hh-------------cCCCHHHHHHH
Confidence 66665433211 12344443 35789999998643 222211111 11 14899999999
Q ss_pred HhHHHHHHcCCC
Q 011766 389 ATINGAKSVLWD 400 (478)
Q Consensus 389 ~T~~pA~~lgl~ 400 (478)
...|++++++++
T Consensus 254 ~~~Na~rl~~l~ 265 (272)
T 3cjp_A 254 LGDNISRLLNIE 265 (272)
T ss_dssp HTHHHHHHHTC-
T ss_pred HHHHHHHHhCcc
Confidence 999999999984
|
| >2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel, lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A* 2dvx_A* 3s4t_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0084 Score=55.61 Aligned_cols=142 Identities=6% Similarity=-0.036 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHHHHcCCceeEeccCChhhhH-HH---hhhcC--CC--Cc---------hHHHHhhhCCCCCCeeeeee
Q 011766 232 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQ-VV---MDTRK--VD--HG---------TVTFLDKIEFLQNNLLSAHT 294 (478)
Q Consensus 232 ~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~-~~---~~~~~--~~--~~---------~~~~l~~~~~~~~~~~i~h~ 294 (478)
...+.+....++|.++|++|.+|......... .. ..... .. .. ...++... ...+.++.|+
T Consensus 142 ~~~~~~~~~~~~a~~~~lpv~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~--P~l~~v~~H~ 219 (327)
T 2dvt_A 142 YDLPQYRPFWGEVEKLDVPFYLHPRNPLPQDSRIYDGHPWLLGPTWAFAQETAVHALRLMASGLFDEH--PRLNIILGHM 219 (327)
T ss_dssp TTSGGGHHHHHHHHHHTCCEEEECCCCCGGGCGGGTTCGGGSGGGTHHHHHHHHHHHHHHHTTHHHHC--TTCCEEESGG
T ss_pred CCCcchHHHHHHHHHcCCeEEECCCCCCcchhhhhccchhhhcccccccHHHHHHHHHHHHcCcHhhC--CCCeEEEecc
Confidence 44567888999999999999999864321100 00 00000 00 00 00122322 2235778898
Q ss_pred ccCChhHHHHHH----------------------hcCCeEEECccchhhccCCCcHHHHHHC-C-CcEEEcCCCCCCCCC
Q 011766 295 VWVNHTEIGLLS----------------------RAGVKVSHCPASAMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSNNR 350 (478)
Q Consensus 295 ~~~~~~~~~~~~----------------------~~~~~~~~~p~~~~~~~~~~~~~~~~~~-g-v~v~~gsD~~~~~~~ 350 (478)
...-+..+.++. +.|+.+.+..... ...++.+++. | -++.+|||++..
T Consensus 220 gg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~y~~~sg~~~-----~~~~~~~~~~~g~dril~gSD~P~~--- 291 (327)
T 2dvt_A 220 GEGLPYMMWRIDHRNAWVKLPPRYPAKRRFMDYFNENFHITTSGNFR-----TQTLIDAILEIGADRILFSTDWPFE--- 291 (327)
T ss_dssp GTTHHHHHHHHHHTTTTCCSCCSSSCSSCHHHHHHHHEEEECTTCCC-----HHHHHHHHTTTCGGGEECCCCTTTS---
T ss_pred cccHHHHHHHHHhhhhhccccccCCCCCCHHHHHhhcEEEeccCCCC-----HHHHHHHHHHhCcccEEEecCCCCc---
Confidence 642222222221 1233333332110 1234555544 4 589999999643
Q ss_pred cCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCC
Q 011766 351 MSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLW 399 (478)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl 399 (478)
.+...+.. ... .+++.++.-+..+.|+++++++
T Consensus 292 -~~~~~~~~---~~~------------~~l~~~~~~~i~~~Na~rl~~l 324 (327)
T 2dvt_A 292 -NIDHASDW---FNA------------TSIAEADRVKIGRTNARRLFKL 324 (327)
T ss_dssp -CHHHHHHH---HHH------------SSSCHHHHHHHHTHHHHHHTTC
T ss_pred -cHHHHHHH---HHH------------CCCCHHHHHHHHHHhHHHHhCC
Confidence 22221111 111 1489999999999999999998
|
| >3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.054 Score=49.19 Aligned_cols=147 Identities=12% Similarity=0.043 Sum_probs=78.6
Q ss_pred CCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhH-HHHHHh-cC
Q 011766 232 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE-IGLLSR-AG 309 (478)
Q Consensus 232 ~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~-~~~~~~-~~ 309 (478)
...+.+....+.|.++|++|.+|......... . .........++... ...+.++.|+.....++ ++.+.+ .+
T Consensus 135 ~~d~~~~~~~~~a~e~glpv~iH~~~~~~~~~---~-~~~p~~~~~v~~~~--P~l~ivl~H~G~~~~~~~~~l~~~~~n 208 (291)
T 3irs_A 135 VDDRRLYPLYAFCEDNGIPVIMMTGGNAGPDI---T-YTNPEHIDRVLGDF--PDLTVVSSHGNWPWVQEIIHVAFRRPN 208 (291)
T ss_dssp TTCGGGHHHHHHHHHTTCCEEEECSSSCSSSG---G-GGCHHHHHHHHHHC--TTCCEEEEGGGTTCHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHcCCeEEEeCCCCCCCCC---c-cCCHHHHHHHHHHC--CCCEEEeecCCcccHHHHHHHHhHCCC
Confidence 34567888999999999999999976411000 0 00000022334433 23457789987543333 333323 35
Q ss_pred CeEEECccchhhccCCCcHHHHHH-CC-CcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHH
Q 011766 310 VKVSHCPASAMRMLGFAPIKEMLH-AD-ICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLR 387 (478)
Q Consensus 310 ~~~~~~p~~~~~~~~~~~~~~~~~-~g-v~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~ 387 (478)
+.+.+.-... .......+.++++ .| -++.+|||++.. .+...+. ... +.++|.++.-+
T Consensus 209 vy~~~Sg~~~-~~~~~~~~~~~~~~~g~drllfgSD~P~~----~~~~~~~---~~~------------~l~l~~e~~~~ 268 (291)
T 3irs_A 209 LYLSPDMYLY-NLPGHADFIQAANSFLADRMLFGTAYPMC----PLKEYTE---WFL------------TLPIKPDAMEK 268 (291)
T ss_dssp EEEECGGGGS-SSTTHHHHHHHHTTGGGGTBCCCCCBTSS----CHHHHHH---HHH------------TSSCCHHHHHH
T ss_pred eEecHHHHhc-cCCCHHHHHHHHHHhCcceEEEecCCCCC----CHHHHHH---HHH------------HCCCCHHHHHH
Confidence 5554322111 0011123334443 23 368899998643 2322111 111 11589999999
Q ss_pred HHhHHHHHHcCCCCCcc
Q 011766 388 MATINGAKSVLWDNDIG 404 (478)
Q Consensus 388 ~~T~~pA~~lgl~~~~G 404 (478)
....|+++++++..+-|
T Consensus 269 i~~~NA~rl~~~~~~~~ 285 (291)
T 3irs_A 269 ILHGNAERLLAQAGREG 285 (291)
T ss_dssp HHTHHHHHHHHHSCC--
T ss_pred HHHHHHHHHhCcccccc
Confidence 99999999999976655
|
| >2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2, ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN; 2.50A {Lactobacillus plantarum} SCOP: c.1.9.15 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.037 Score=50.62 Aligned_cols=144 Identities=11% Similarity=-0.003 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcC-----CC-Cch--------HHHHhhhCCCCCCeeeeeeccCC
Q 011766 233 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRK-----VD-HGT--------VTFLDKIEFLQNNLLSAHTVWVN 298 (478)
Q Consensus 233 ~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~-----~~-~~~--------~~~l~~~~~~~~~~~i~h~~~~~ 298 (478)
..+.+....++|.++|+++.+|...............+ .. ... ..++.... ..+.++.|+...-
T Consensus 133 ~~~~~~~~~~~a~~~~lpv~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~P--~l~~v~~H~gg~~ 210 (307)
T 2f6k_A 133 GSPVLERVYQELDARQAIVALHPNEPAILPKNVDIDLPVPLLGFFMDTTMTFINMLKYHFFEKYP--NIKVIIPHAGAFL 210 (307)
T ss_dssp TCGGGHHHHHHHHTTTCEEEEECCCCSCCCTTSSTTCCHHHHHHHHHHHHHHHHHHHTTHHHHCT--TCEEEESGGGTTH
T ss_pred CcHhHHHHHHHHHHcCCeEEECCCCCccccccccccccchhccchHHHHHHHHHHHhcCccccCC--CCeEEccCCCccc
Confidence 44678888999999999999999754321000000000 00 000 01223321 2356788886421
Q ss_pred hh---------------HHHHHHhcCCeEEECccchhhccCCCcHHHHHHC-C-CcEEEcCCCCCCCCCcCHHHHHHHHH
Q 011766 299 HT---------------EIGLLSRAGVKVSHCPASAMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSNNRMSIVDEMYLAS 361 (478)
Q Consensus 299 ~~---------------~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-g-v~v~~gsD~~~~~~~~~~~~~~~~~~ 361 (478)
+. .+....+ ++.+.++.... ...++.+++. | -++.+|||++... +........
T Consensus 211 p~~~~~~~~~~~~~~~~~~~~~~~-n~y~~~s~~~~-----~~~l~~~~~~~g~drll~gSD~P~~~----~~~~~~~~~ 280 (307)
T 2f6k_A 211 GIVDDRIAQYAQKVYQVDVYDVMH-HVYFDVAGAVL-----PRQLPTLMSLAQPEHLLYGSDIPYTP----LDGSRQLGH 280 (307)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHH-HSEEECCSSCT-----TTHHHHHTTTSCGGGEECCCCTTTSC----HHHHHHHHH
T ss_pred hhhHHHHHhhccccCcccHHHHHh-heEEeccCCCC-----HHHHHHHHHhcCcccEEEecCCCCCC----chhHHHHHH
Confidence 21 1222223 56555443311 2345556554 3 4799999996531 211111111
Q ss_pred HHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCC
Q 011766 362 LINKGREVFANGTTDPAALPAETVLRMATINGAKSVLW 399 (478)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl 399 (478)
.+.. ..++|.++.-+....|+++++++
T Consensus 281 ~l~~-----------~~~l~~~~~~~i~~~Na~rl~~~ 307 (307)
T 2f6k_A 281 ALAT-----------TDLLTNEQKQAIFYDNAHRLLTE 307 (307)
T ss_dssp HHHH-----------CTTSCHHHHHHHHTHHHHHHHHC
T ss_pred HHhh-----------ccCCCHHHHHHHHHHHHHHHhCc
Confidence 1110 01489999888899999998864
|
| >4do7_A Amidohydrolase 2; enzyme function initiative, EFI, structural TIM-barrel fold, putative lactonase; 1.70A {Burkholderia multivorans} PDB: 4dlm_A 4dnm_A* 4dlf_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.094 Score=47.88 Aligned_cols=139 Identities=12% Similarity=-0.054 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCCh--------------h
Q 011766 235 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNH--------------T 300 (478)
Q Consensus 235 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~--------------~ 300 (478)
+.+...++.+.++|+++.+|....... . ....+... ...+.++.|+..... +
T Consensus 122 ~~~~~~~~~~~~~glpv~ih~~~~~l~-~-----------l~~ll~~~--P~l~iVi~H~G~p~~~~~~~~~~~~~~w~~ 187 (303)
T 4do7_A 122 ADFARGVAWLQANDYVYDVLVFERQLP-D-----------VQAFCARH--DAHWLVLDHAGKPALAEFDRDDTALARWRA 187 (303)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCGGGHH-H-----------HHHHHHHC--CSSCEEEGGGGCCCGGGCC---CHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEEecCHHHHH-H-----------HHHHHHHC--CCCCEEEeCCCCCCccccccccchHHHHHH
Confidence 457788899999999999998753210 0 12233332 235678888876431 2
Q ss_pred HHHHHHhc-CCeEEECccchhhc----------cCC-CcHHHHHHC-C-CcEEEcCCCCCCCCCcCHHHHHHHHHH-Hhc
Q 011766 301 EIGLLSRA-GVKVSHCPASAMRM----------LGF-APIKEMLHA-D-ICVSLGTDGAPSNNRMSIVDEMYLASL-INK 365 (478)
Q Consensus 301 ~~~~~~~~-~~~~~~~p~~~~~~----------~~~-~~~~~~~~~-g-v~v~~gsD~~~~~~~~~~~~~~~~~~~-~~~ 365 (478)
.+..+++. ++.+.++-...... ... +-++.+++. | -++.+|||++......++-..+..... ..
T Consensus 188 ~l~~la~~~nv~~klSg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~dri~fgSD~P~~~~~~~~~~~~~~~~~~~~- 266 (303)
T 4do7_A 188 ALRELAALPHVVCKLSGLVTEADWRRGLRASDLRHIEQCLDAALDAFGPQRLMFGSDWPVCLLAASYDEVASLVERWAE- 266 (303)
T ss_dssp HHHHHHTSTTEEEEECSCGGGSCTTTCCCHHHHHHHHHHHHHHHHHHCGGGEEECCCBTGGGGTCCHHHHHHHHHHHHH-
T ss_pred HHHHHHhCCCEEEEeCCccccccccccccCCCHHHHHHHHHHHHHHhCcccEEEeCCCCCCcCcCCHHHHHHHHHHHHh-
Confidence 34445544 55555442211100 000 113344433 4 589999998654222222111111110 10
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 011766 366 GREVFANGTTDPAALPAETVLRMATINGAKSVLWD 400 (478)
Q Consensus 366 ~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~ 400 (478)
.++|.++.=+....|+++++|++
T Consensus 267 ------------~~l~~~~~~~i~~~Na~rl~~l~ 289 (303)
T 4do7_A 267 ------------SRLSAAERSALWGGTAARCYALP 289 (303)
T ss_dssp ------------HHCCHHHHHHHTTHHHHHHTTCC
T ss_pred ------------cCCCHHHHHHHHHHHHHHHhCCC
Confidence 03788888888899999999994
|
| >3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.34 Score=42.99 Aligned_cols=83 Identities=12% Similarity=0.048 Sum_probs=47.7
Q ss_pred hHHHHHHhcCCeEEECccchhhcc---CCCcHHHHHHCCCcEEEcCCCCCCC-CCcCHHHHHHHHHHHhcccccccCCCC
Q 011766 300 TEIGLLSRAGVKVSHCPASAMRML---GFAPIKEMLHADICVSLGTDGAPSN-NRMSIVDEMYLASLINKGREVFANGTT 375 (478)
Q Consensus 300 ~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~gv~v~~gsD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (478)
+.+..+++.|+.+.+...+..... .....+.+++.|+.+++|||..... ....+.+.+......
T Consensus 148 ~~l~~l~~~G~~iEiN~~s~~g~~g~~~~~~~~~~~~~gl~~~igSDaH~~~~r~~~~~~a~~~l~~~------------ 215 (262)
T 3qy7_A 148 SLLYHLVEKGAASQITSGSLAGIFGKQLKAFSLRLVEANLIHFVASDAHNVKTRNFHTQEALYVLEKE------------ 215 (262)
T ss_dssp HHHHHHHHTTCEEEEEHHHHHTTTCHHHHHHHHHHHHTTCCCEEECCBCSSSSSCCCHHHHHHHHHHH------------
T ss_pred HHHHHHHHCCCEEEEECCccCcccchHHHHHHHHHHhCCCeEEEEccCCCCCCCCchHHHHHHHHHHH------------
Confidence 557788888876655433321111 1224567888999999999964332 233444433332110
Q ss_pred CCCCCCHHHHHHHHhHHHHHHcCC
Q 011766 376 DPAALPAETVLRMATINGAKSVLW 399 (478)
Q Consensus 376 ~~~~ls~~~al~~~T~~pA~~lgl 399 (478)
+....|-+ ...||.++++-
T Consensus 216 ----~G~~~a~~-~~~n~~~il~~ 234 (262)
T 3qy7_A 216 ----FGSELPYM-LTENAELLLRN 234 (262)
T ss_dssp ----HCSHHHHH-HHHHHHHHHTT
T ss_pred ----hCHHHHHH-HHHHHHHHHCC
Confidence 22344444 56899999964
|
| >3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.44 Score=44.81 Aligned_cols=93 Identities=13% Similarity=0.106 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHc----CCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCC-------------------------CC
Q 011766 236 LLLETRDMAREF----KTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEF-------------------------LQ 286 (478)
Q Consensus 236 ~l~~~~~~a~~~----~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------------~~ 286 (478)
.+.+-+++|.++ +++|.+|.-...... .+++..... ..
T Consensus 180 ~F~~QL~LA~e~~~~~~lPv~IH~R~A~~d~-------------l~iL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (401)
T 3e2v_A 180 FFEEQLKISCLNDKLSSYPLFLHMRSACDDF-------------VQILERFVVGFTDEKDTFQLQKLGASSSSGFYKFHP 246 (401)
T ss_dssp HHHHHHHHTTSSHHHHTSCEEEEEESCHHHH-------------HHHHHHHHHCEECSSCTTCGGGC--CCTTCEECCCT
T ss_pred HHHHHHHHHHhhhccCCCeEEEEecchHHHH-------------HHHHHHhhccccccccccccccccccccccccccCC
Confidence 355667899999 999999997644332 122222110 01
Q ss_pred CCeeeeeeccCChhHHHHHHhcC--CeEEECccchhhccCCCcHHHHHHC-C-CcEEEcCCCC
Q 011766 287 NNLLSAHTVWVNHTEIGLLSRAG--VKVSHCPASAMRMLGFAPIKEMLHA-D-ICVSLGTDGA 345 (478)
Q Consensus 287 ~~~~i~h~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~-g-v~v~~gsD~~ 345 (478)
....+.||..=+.++++++.+.| ..+.+.... ++. ... .+++.. . -.+.+=||++
T Consensus 247 ~~~~V~H~FsGs~e~a~~~l~lG~~~yis~~g~~-~k~--~~~-~e~v~~iPldrLLlETDaP 305 (401)
T 3e2v_A 247 DRKLVVHSFTGSAIDLQKLLNLSPNIFIGVNGCS-LRT--EEN-LAVVKQIPTERLLLETDAP 305 (401)
T ss_dssp TCCEEECSCCCCHHHHHHHHHHCTTEEEEECGGG-GSS--HHH-HHHHHTSCGGGEEECCCTT
T ss_pred CCcEEEEcCCCCHHHHHHHHhCCCCEEEEeCCEe-cCC--HHH-HHHHHhCCchhEEEecCCC
Confidence 12457899999999999999999 888877642 211 111 123322 1 2477788876
|
| >2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A | Back alignment and structure |
|---|
Probab=94.56 E-value=1.7 Score=38.03 Aligned_cols=84 Identities=12% Similarity=0.110 Sum_probs=46.3
Q ss_pred hhHHHHHHhcCCeEEECccch--hhccC------CCcHHHHHHCCCcEEEcCCCCCCCC-CcCHHHHHHHHHHHhccccc
Q 011766 299 HTEIGLLSRAGVKVSHCPASA--MRMLG------FAPIKEMLHADICVSLGTDGAPSNN-RMSIVDEMYLASLINKGREV 369 (478)
Q Consensus 299 ~~~~~~~~~~~~~~~~~p~~~--~~~~~------~~~~~~~~~~gv~v~~gsD~~~~~~-~~~~~~~~~~~~~~~~~~~~ 369 (478)
++.+..+++.|+.+.+...+. ....+ ..-++.+.+.|+.+++|||...... ...+-.........
T Consensus 151 ~~~l~~l~~~G~~lEiN~~s~~~~~~~g~~~~~~~~~~~~~~~~gl~~~~GSDaH~~~~~~~~~~~a~~~l~~~------ 224 (247)
T 2wje_A 151 EKRVRELIDMGCYTQVNSSHVLKPKLFGERYKFMKKRAQYFLEQDLVHVIASDMHNLDGRPPHMAEAYDLVTQK------ 224 (247)
T ss_dssp HHHHHHHHHTTCEEEEEHHHHSCCCSSCCSCHHHHHHHHHHHHTTCCSEEECCBCCSSSSCCCHHHHHHHHHHH------
T ss_pred HHHHHHHHHCCCEEEEecHhhHhcCCCCCcChHHHHHHHHHHHCCCeEEEEeCCCCCcccChhHHHHHHHHHHH------
Confidence 567788888888766554332 11111 1123455689999999999754321 12222222221110
Q ss_pred ccCCCCCCCCCCHHHHHHHHhHHHHHHcC
Q 011766 370 FANGTTDPAALPAETVLRMATINGAKSVL 398 (478)
Q Consensus 370 ~~~~~~~~~~ls~~~al~~~T~~pA~~lg 398 (478)
+..+.+-.+...||.+++.
T Consensus 225 ----------~G~~~~~~l~~~n~~~i~~ 243 (247)
T 2wje_A 225 ----------YGEAKAQELFIDNPRKIVM 243 (247)
T ss_dssp ----------HCHHHHHHHHTHHHHHHHT
T ss_pred ----------hCHHHHHHHHHHHHHHHHc
Confidence 2355555555579988874
|
| >1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A* | Back alignment and structure |
|---|
Probab=92.28 E-value=0.26 Score=42.17 Aligned_cols=87 Identities=8% Similarity=-0.044 Sum_probs=56.4
Q ss_pred ChhHHHHHHhcCCeEEECccchhhc------cCCCc----HHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhccc
Q 011766 298 NHTEIGLLSRAGVKVSHCPASAMRM------LGFAP----IKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGR 367 (478)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~p~~~~~~------~~~~~----~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~ 367 (478)
+.+.++.+++.|+.+.++.....+. ....+ ++...+.|+++.++||......-.++......+..
T Consensus 113 ~~~~a~~A~e~gv~lEIn~s~~~~~~~~~R~~~~~~~~~il~l~k~~g~~ivisSDAh~~~~v~~~~~~~~l~~~----- 187 (212)
T 1v77_A 113 DHVLAKLMVKKNVALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKVRRFLTSSAQEKWDVRYPRDLISLGVV----- 187 (212)
T ss_dssp CHHHHHHHHHHTCEEEEESHHHHHSCHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCSSGGGCCCHHHHHHHHHH-----
T ss_pred CHHHHHHHHHCCeEEEEECcHHhcCCcchHHHHHHHHHHHHHHHHhcCCCEEEeCCCCChhhcCCHHHHHHHHHH-----
Confidence 4577888899999999887654322 11222 33345679999999997543211233333333221
Q ss_pred ccccCCCCCCCCCCHHHHHHHHhHHHHHHcCC
Q 011766 368 EVFANGTTDPAALPAETVLRMATINGAKSVLW 399 (478)
Q Consensus 368 ~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl 399 (478)
-|++.+++..+.|.+|.+++..
T Consensus 188 ----------~G~~~e~~~~~l~~~~~~i~~~ 209 (212)
T 1v77_A 188 ----------IGMEIPQAKASISMYPEIILKR 209 (212)
T ss_dssp ----------TTCCHHHHHHTTTHHHHHHHC-
T ss_pred ----------cCCCHHHHHHHHHHHHHHHHHh
Confidence 2699999999999999998864
|
| >2gwg_A 4-oxalomesaconate hydratase; TIM-barrel like protein, structural genomics, PSI, protein S initiative; 1.80A {Rhodopseudomonas palustris} SCOP: c.1.9.15 | Back alignment and structure |
|---|
Probab=91.33 E-value=3.8 Score=37.90 Aligned_cols=147 Identities=12% Similarity=0.047 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHHcCCceeEeccCChhhh------HHHh-hhcCCCCc-hHHHHhhhCCCCCCeeeeeeccCChhHHH
Q 011766 232 ATDRLLLETRDMAREFKTGIHMHVAEIPYEN------QVVM-DTRKVDHG-TVTFLDKIEFLQNNLLSAHTVWVNHTEIG 303 (478)
Q Consensus 232 ~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~------~~~~-~~~~~~~~-~~~~l~~~~~~~~~~~i~h~~~~~~~~~~ 303 (478)
...+.+....++|.++|++|.+|........ .... .......- ...++.... ..+.++.|+...-+..+.
T Consensus 156 l~d~~~~p~~~~a~e~~lpv~iH~~~~~~~~~~~~~~~~~~~~~~a~~~li~~~v~~~~P--~l~~vi~H~Gg~~p~~~~ 233 (350)
T 2gwg_A 156 LTDRIWYPIYEKMVELEIPAMIHVSTSCNTCFHTTGAHYLNADTTAFMQCVAGDLFKDFP--ELKFVIPHGGGAVPYHWG 233 (350)
T ss_dssp TTSGGGHHHHHHHHHHTCCEEECCCC---------TTHHHHHHHHHHHHHHHSCHHHHCT--TCCEEESGGGTTTGGGHH
T ss_pred CCCHHHHHHHHHHHHcCCeEEECCCCCCcccccccccccchHHHHHHHHHHhcCccccCC--CCcEEeccCCCcchhhHH
Confidence 4556788899999999999999997542200 0000 00000000 001223222 235788998743222221
Q ss_pred H---------------HHhcCCeEEECccchhhccCCCcHHHHHHC-C-CcEEEcCCCCCCCCCc-----CHHHHHHHHH
Q 011766 304 L---------------LSRAGVKVSHCPASAMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSNNRM-----SIVDEMYLAS 361 (478)
Q Consensus 304 ~---------------~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-g-v~v~~gsD~~~~~~~~-----~~~~~~~~~~ 361 (478)
+ ....++.+.++.... ..++.+++. | -++.+|||++...... ..+......
T Consensus 234 r~~~~~~~~~~~~l~~~~~~n~y~d~s~~~~------~~l~~l~~~~g~dril~gSD~P~~~~~~~p~~~~~~~~~~~~- 306 (350)
T 2gwg_A 234 RFRGLAQEMKKPLLEDHVLNNIFFDTCVYHQ------PGIDLLNTVIPVDNVLFASEMIGAVRGIDPRTGFYYDDTKRY- 306 (350)
T ss_dssp HHHHHHHHTTCCCHHHHTTTTEEEECCCCSH------HHHHHHHHHSCGGGEECCCCCSSSCCCEETTTTEETTCTHHH-
T ss_pred HHHHHHHhccCCCcHHHHhhcEEEEecccCc------HHHHHHHHHhCcccEEEecCCCCCcccCCcccccchhhHHHH-
Confidence 1 112344444443211 234555543 4 4899999996432110 001111000
Q ss_pred HHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCC
Q 011766 362 LINKGREVFANGTTDPAALPAETVLRMATINGAKSVLW 399 (478)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl 399 (478)
+.. -.++|.++.-+....|+++++++
T Consensus 307 -l~~-----------~~~l~~~~~~~i~~~NA~rl~~~ 332 (350)
T 2gwg_A 307 -IEA-----------STILTPEEKQQIYEGNARRVYPR 332 (350)
T ss_dssp -HHH-----------CSSSCHHHHHHHHTHHHHHHCHH
T ss_pred -HHh-----------ccCCCHHHHHHHHHHHHHHHHHh
Confidence 100 01489998888999999999975
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 478 | ||||
| d2uz9a2 | 313 | c.1.9.9 (A:76-388) Guanine deaminase {Human (Homo | 2e-47 | |
| d1p1ma2 | 281 | c.1.9.9 (A:50-330) Hypothetical protein TM0936, pr | 1e-44 | |
| d2i9ua2 | 310 | c.1.9.9 (A:67-376) Guanine deaminase {Clostridium | 1e-41 | |
| d2paja2 | 336 | c.1.9.9 (A:70-405) Hypothetical protein GOS_194309 | 4e-39 | |
| d2ooda2 | 325 | c.1.9.9 (A:73-397) Guanine deaminase {Bradyrhizobi | 5e-37 | |
| d2imra2 | 308 | c.1.9.16 (A:91-398) Hypothetical protein DR0824 {D | 4e-29 | |
| d1ra0a2 | 320 | c.1.9.5 (A:56-375) Cytosine deaminase catalytic do | 1e-24 | |
| d2p9ba2 | 324 | c.1.9.17 (A:71-394) Uncharacterized protein BL1453 | 5e-22 | |
| d2q09a2 | 301 | c.1.9.17 (A:66-366) Probable 4-imidazolone-5-propa | 2e-17 | |
| d2puza2 | 301 | c.1.9.17 (A:80-380) Imidazolonepropionase {Agrobac | 2e-17 | |
| d2paja1 | 139 | b.92.1.4 (A:10-69,A:406-484) Hypothetical protein | 4e-16 | |
| d2bb0a2 | 300 | c.1.9.17 (A:74-373) Imidazolonepropionase {Bacillu | 2e-14 | |
| d2bb0a1 | 113 | b.92.1.10 (A:3-73,A:374-415) Imidazolonepropionase | 2e-14 | |
| d2qs8a2 | 310 | c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromon | 4e-14 | |
| d2i9ua1 | 109 | b.92.1.4 (A:9-66,A:377-427) Guanine deaminase {Clo | 2e-13 | |
| d3be7a2 | 303 | c.1.9.18 (A:57-359) Zn-dependent arginine carboxyp | 8e-13 | |
| d1p1ma1 | 123 | b.92.1.4 (A:1-49,A:331-404) Hypothetical protein T | 1e-11 | |
| d2r8ca2 | 311 | c.1.9.18 (A:58-368) Uncharacterized protein EAJ561 | 4e-11 | |
| d2p9ba1 | 118 | b.92.1.10 (A:9-70,A:395-450) Uncharacterized prote | 2e-07 | |
| d2puza1 | 103 | b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionas | 3e-07 | |
| d2puza1 | 103 | b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionas | 7e-04 | |
| d1yrra2 | 297 | c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphat | 5e-07 | |
| d2uz9a1 | 131 | b.92.1.4 (A:8-75,A:389-451) Guanine deaminase {Hum | 2e-06 | |
| d1m7ja2 | 61 | b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydro | 2e-06 | |
| d2r8ca1 | 102 | b.92.1.9 (A:2-57,A:369-414) Uncharacterized protei | 4e-06 | |
| d1ynya1 | 127 | b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacill | 7e-06 | |
| d2vhla1 | 91 | b.92.1.5 (A:3-57,A:359-394) N-acetylglucosamine-6- | 8e-06 | |
| d1onwa1 | 105 | b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidas | 1e-05 | |
| d1yrra1 | 85 | b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6- | 3e-05 | |
| d3be7a1 | 95 | b.92.1.9 (A:3-56,A:360-400) Zn-dependent arginine | 7e-04 | |
| d2q09a1 | 103 | b.92.1.10 (A:4-65,A:367-407) Probable 4-imidazolon | 8e-04 | |
| d1m7ja1 | 55 | b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolas | 0.001 |
| >d2uz9a2 c.1.9.9 (A:76-388) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Human (Homo sapiens) [TaxId: 9606]
Score = 164 bits (415), Expect = 2e-47
Identities = 71/331 (21%), Positives = 139/331 (41%), Gaps = 23/331 (6%)
Query: 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGI-ELIHSG 138
PG V+TH+H SQ G + D+ L+ WL +P E D + + +G
Sbjct: 1 PGLVDTHIHASQYSFAGSSIDLPLLEWLTKYTFPAEHRFQNIDFAEEVYTRVVRRTLKNG 60
Query: 139 VTCFAEAGGQH---VSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSS 195
T H +A + G RA + + MD + TT++ I+
Sbjct: 61 TTTACYFATIHTDSSLLLADITDKFGQRAFVGKVCMDLND--TFPEYKETTEESIKET-- 116
Query: 196 ISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHV 255
+ ++ R++ R ++ ++ L+ E ++A+ I H+
Sbjct: 117 ----------ERFVSEMLQKNYSRVKPIVTPRFSLSCSETLMGELGNIAKTRDLHIQSHI 166
Query: 256 AEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHC 315
+E E + V + + DK L N + AH +++ E+ + G ++HC
Sbjct: 167 SENRDEVEAVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLSAEELNVFHERGASIAHC 226
Query: 316 PASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGT 374
P S + + GF + E+L ++ + LGTD A S++D + A +++ +
Sbjct: 227 PNSNLSLSSGFLNVLEVLKHEVKIGLGTDVA-GGYSYSMLDAIRRAVMVSNILLI---NK 282
Query: 375 TDPAALPAETVLRMATINGAKSVLWDNDIGS 405
+ +L + V R+AT+ G++++ D +IG+
Sbjct: 283 VNEKSLTLKEVFRLATLGGSQALGLDGEIGN 313
|
| >d1p1ma2 c.1.9.9 (A:50-330) Hypothetical protein TM0936, probable catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein TM0936, probable catalytic domain species: Thermotoga maritima [TaxId: 2336]
Score = 155 bits (393), Expect = 1e-44
Identities = 83/322 (25%), Positives = 139/322 (43%), Gaps = 43/322 (13%)
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
NTH H L +G+A+D+ WL ++ P E +TE+ +Y T+L +E+ G+
Sbjct: 1 ALFNTHTHAPMTLLRGVAEDLSFEEWLFSKVLPIEDRLTEKMAYYGTILAQMEMARHGIA 60
Query: 141 CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNF 200
F + H +AKAV G+RA L + +D +
Sbjct: 61 GFVD-MYFHEEWIAKAVRDFGMRALLTRGLVDSNG--DDGGRLEENLKLY---------- 107
Query: 201 VSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 260
+ +GRI + FG ++ L D A+ + +H+ E
Sbjct: 108 ----------NEWNGFEGRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAPVTIHLYETSK 157
Query: 261 ENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAM 320
E + D + I + ++AH V + G+L VSH PAS +
Sbjct: 158 EEYDLED-----------ILNIGLKEVKTIAAHCVHLPERYFGVLKDIPFFVSHNPASNL 206
Query: 321 RML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAA 379
++ G AP++ M+ + V+LGTDGA SNN +++ EM LASL+ K + +P
Sbjct: 207 KLGNGIAPVQRMIEHGMKVTLGTDGAASNNSLNLFFEMRLASLLQKAQ--------NPRN 258
Query: 380 LPAETVLRMATINGAKSVLWDN 401
L T L+M T +GA+++ + +
Sbjct: 259 LDVNTCLKMVTYDGAQAMGFKS 280
|
| >d2i9ua2 c.1.9.9 (A:67-376) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Clostridium acetobutylicum [TaxId: 1488]
Score = 148 bits (373), Expect = 1e-41
Identities = 71/332 (21%), Positives = 123/332 (37%), Gaps = 28/332 (8%)
Query: 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGI-ELIHSG 138
PG + H H SQ GI D +L+ WL++ +P E+ D T I +LI +G
Sbjct: 1 PGMNDLHAHASQYKNLGIGMDKELLPWLNNYTFPEEAKFLNVDYAKKTYGRLIKDLIKNG 60
Query: 139 VTC---FAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSS 195
T FA E+ + G+ A + + MD + T+ +
Sbjct: 61 TTRVALFATLHKDSTIELFNMLIKSGIGAYVGKVNMDYNCPDYLTENYITSLNDT----- 115
Query: 196 ISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHV 255
E + ++ R + + ++ L+ ++ +++ + H+
Sbjct: 116 -----------EEIILKYKDKSNIVKPIITPRFVPSCSNELMDGLGKLSYKYRLPVQSHL 164
Query: 256 AEIPYENQVVMDTRKVDHGTVTFLDKIE-FLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 314
+E E VV K + DK F L AH + + EI L+ R V + H
Sbjct: 165 SENLDEIAVVKSLHKKSNFYGEVYDKFGLFGNTPTLMAHCIHSSKEEINLIKRNNVTIVH 224
Query: 315 CPASAMRML-GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANG 373
CP S + G P+++ L+ I V LG+D + + S+ + A +K + +
Sbjct: 225 CPTSNFNLGSGMMPVRKYLNLGINVVLGSDISAGHT-CSLFKVIAYAIQNSKIKWQESGK 283
Query: 374 TTDPAALPAETVLRMATINGAKSVLWDNDIGS 405
L MAT G +GS
Sbjct: 284 --KDMFLSTSEAFYMATKKGGSFF---GKVGS 310
|
| >d2paja2 c.1.9.9 (A:70-405) Hypothetical protein GOS_1943094 {Environmental samples} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein GOS 1943094 species: Environmental samples
Score = 142 bits (358), Expect = 4e-39
Identities = 73/336 (21%), Positives = 124/336 (36%), Gaps = 12/336 (3%)
Query: 80 PGFVNTHVHTSQQLAKGI--ADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHS 137
P +VNTH H Q L KG D L WL + + + E ++ + IEL S
Sbjct: 1 PAWVNTHHHLFQSLLKGEPAGLDATLTPWLAATPYRFRALFDERRFRLAARIGLIELARS 60
Query: 138 GVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSIS 197
G A+ + M + A+ + D +
Sbjct: 61 GCATVADHNYVYYPGMPFDSSAILFEEAEKLGLRFVLLRGGATQTRQLEADLPTALRPET 120
Query: 198 FNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAE 257
+ + + L A++H A+ +R + + A + G+ MH
Sbjct: 121 LDAYVADIERLAARYHDASPRAMRRVVMAPTTVLYSISPREMRETAAVARRLGLRMHSHL 180
Query: 258 IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPA 317
V F + ++L +++ AH V V+ EI LL++ G V+HCP
Sbjct: 181 SETVGYQDSAYSMYGKSPVAFCGEHDWLGSDVWYAHLVKVDADEIALLAQTGTGVAHCPQ 240
Query: 318 SAMRMLG-FAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGRE-------- 368
S R+ P++EM A + VS+G DGA SN ++ E+++ L + R
Sbjct: 241 SNGRLGSGICPVREMADAGVPVSIGVDGAASNEAADMISEVHMTWLAQRARLGMLAQPAY 300
Query: 369 VFANGTTDPAALPAETVLRMATINGAKSVLWDNDIG 404
+ A V+ T GA+ + D ++G
Sbjct: 301 RGGSFEGGAGAASIAEVIHWGTAGGARVMGLD-EVG 335
|
| >d2ooda2 c.1.9.9 (A:73-397) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Bradyrhizobium japonicum [TaxId: 375]
Score = 136 bits (342), Expect = 5e-37
Identities = 60/341 (17%), Positives = 117/341 (34%), Gaps = 31/341 (9%)
Query: 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGI-ELIHSG 138
PGF++ H+H Q G + L+ WL I+P E + + + + L+ +G
Sbjct: 1 PGFIDGHIHLPQTRVLGAYGE-QLLPWLQKSIYPEEIKYKDRNYAREGVKRFLDALLAAG 59
Query: 139 VTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISF 198
T + E R V + + + + + T ++ +
Sbjct: 60 TTTCQAFTSSSPVATEELFEEASRRNMRVIAGLTGIDRNAPAEFIDTPENFYR------- 112
Query: 199 NFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFK-TGIHMHVAE 257
K L A++H GR R A+ LL + + E ++ H++E
Sbjct: 113 -----DSKRLIAQYHD--KGRNLYAITPRFAFGASPELLKACQRLKHEHPDCWVNTHISE 165
Query: 258 IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPA 317
P E V+ + +K + + H V++++ E +S+ G V CP
Sbjct: 166 NPAECSGVLVEHPDCQDYLGVYEKFDLVGPKFSGGHGVYLSNNEFRRMSKKGAAVVFCPC 225
Query: 318 SAMRMLGFAPIKEML---HADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANG- 373
S + + + +S GTD N S++ + A + +G
Sbjct: 226 SNLFLGSGLFRLGRATDPEHRVKMSFGTDVGGGNR-FSMISVLDDAYKVGMCNNTLLDGS 284
Query: 374 ---------TTDPAALPAETVLRMATINGAKSVLWDNDIGS 405
+ L T+ GA+ + D+ +G+
Sbjct: 285 IDPSRKDLAEAERNKLSPYRGFWSVTLGGAEGLYIDDKLGN 325
|
| >d2imra2 c.1.9.16 (A:91-398) Hypothetical protein DR0824 {Deinococcus radiodurans [TaxId: 1299]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: DR0824-like domain: Hypothetical protein DR0824 species: Deinococcus radiodurans [TaxId: 1299]
Score = 114 bits (285), Expect = 4e-29
Identities = 46/322 (14%), Positives = 87/322 (27%), Gaps = 25/322 (7%)
Query: 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGV 139
P VN H H + A W+ + + + L G
Sbjct: 1 PPPVNAHTHLDMSAYEFQALP--YFQWIPEVVIRGRH----LRGVAAAQAGADTLTRLGA 54
Query: 140 TCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASW---AVRTTDDCIQPDSSI 196
+ M + L L ++ A + + +
Sbjct: 55 GGVGDIVW-APEVMDALLAREDLSGTLYFEVLNPFPDKADEVFAAARTHLERWRRLERPG 113
Query: 197 SFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVA 256
+S + G+ ++ + + A
Sbjct: 114 LRLGLSPHTPFTVSHRLMRLLSDYAAGEGLPLQIHVAEHPTELEMFRTGGGPLWDNRMPA 173
Query: 257 EIPYENQVVMDTRKVDHGT-VTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAG-VKVSH 314
P+ V+ T V +LD++ L H V V +I ++RAG V+
Sbjct: 174 LYPHTLAEVIGREPGPDLTPVRYLDELGVLAARPTLVHMVNVTPDDIARVARAGCAVVTC 233
Query: 315 CPASAMRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGT 374
++ G A + V+LGTD S +++ +E+ A + G
Sbjct: 234 PRSNHHLECGTFDWPAFAAAGVEVALGTDSVASGETLNVREEVTFARQLYPG-------- 285
Query: 375 TDPAALPAETVLRMATINGAKS 396
L ++R A G +
Sbjct: 286 -----LDPRVLVRAAVKGGQRV 302
|
| >d1ra0a2 c.1.9.5 (A:56-375) Cytosine deaminase catalytic domain {Escherichia coli [TaxId: 562]} Length = 320 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Cytosine deaminase catalytic domain domain: Cytosine deaminase catalytic domain species: Escherichia coli [TaxId: 562]
Score = 101 bits (252), Expect = 1e-24
Identities = 42/349 (12%), Positives = 98/349 (28%), Gaps = 47/349 (13%)
Query: 82 FVNTHVHTSQQLAKGIAD---DVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSG 138
FV H+H G + L + +R ++ +T +D I +G
Sbjct: 2 FVEPHIHLDTTQTAGQPNWNQSGTLFEGI-ERWAERKALLTHDDVKQRAWQTLKWQIANG 60
Query: 139 VTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISF 198
+ + + +L ++ + P + +
Sbjct: 61 IQHVRTHVDVSDATLTALKAMLEVKQEVAPWIDLQIVAFPQEGILSYPNG---------- 110
Query: 199 NFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEI 258
+ L + + L +T +A+++ I +H EI
Sbjct: 111 -------EALLEEALRLGADVVGAIPHFEFTREYGVESLHKTFALAQKYDRLIDVHCDEI 163
Query: 259 PYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPAS 318
E ++T ++ + ++ LL +G+ P
Sbjct: 164 DDEQSRFVETVAALAHHEGMGARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVANPLV 223
Query: 319 AMRM----------LGFAPIKEMLHADICVSLGTD----GAPSNNRMSIVDEMYLASLIN 364
+ + G +KEML + I V G D +++ +++ +
Sbjct: 224 NIHLQGRFDTYPKRRGITRVKEMLESGINVCFGHDGVFDPWYPLGTANMLQVLHMGLHVC 283
Query: 365 KGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKAD 413
+ L + T + A+++ + + AG A+
Sbjct: 284 Q----------LMGYGQINDGLNLITHHSARTLNLQD--YGIAAGNSAN 320
|
| >d2p9ba2 c.1.9.17 (A:71-394) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Uncharacterized protein BL1453 species: Bifidobacterium longum [TaxId: 216816]
Score = 94.4 bits (232), Expect = 5e-22
Identities = 38/339 (11%), Positives = 81/339 (23%), Gaps = 28/339 (8%)
Query: 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGV 139
PG +N H H Q + S + + + L+ SGV
Sbjct: 1 PGLINAHTHLFSQGKPL-NPKLATPKGQRMVATFAHSPLGKPYMAATVKHNATTLLESGV 59
Query: 140 TCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFN 199
T G + ++ + + +
Sbjct: 60 TTIRTLGDVGYEVVTLRDQIDAGQILGPRILASGPLMAIPEGHGAPLIALTSGTPEEART 119
Query: 200 FVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAE-- 257
V+ + K AA G + I + + + + G+ +
Sbjct: 120 AVAQNLKAGVNAIKIAATGGVTDAQEIGEAGSPQMSVEQMRAICDEAHQYGVIVGAHAQS 179
Query: 258 -------IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGV 310
+ + +D + + + LL +
Sbjct: 180 PEGVRRSLLAGVDTIEHGSVLDDELIGMFRHNPNALRGYSALIPTLSAGLPLTLLGQDVT 239
Query: 311 KVSHCPASAMRMLG---FAPIKEMLHADICVSLGTD-GAPSNNRMSIVDEMYLASLINKG 366
++ + + + ++ A + + +GTD G + + E+ L
Sbjct: 240 GITDIQLENSKNVVGGMVSGARQAHEAGLMIGVGTDTGMTFVPQYATWRELELL------ 293
Query: 367 REVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGS 405
A L AT A + D + GS
Sbjct: 294 --------VAYAGFSPAEALHAATAVNASILGVDAETGS 324
|
| >d2q09a2 c.1.9.17 (A:66-366) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Score = 80.7 bits (197), Expect = 2e-17
Identities = 41/339 (12%), Positives = 98/339 (28%), Gaps = 53/339 (15%)
Query: 80 PGFVNTHVH-----------TSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTL 128
PG ++ H H +Q A+ + + +E+ + L
Sbjct: 1 PGLIDCHTHLIFAGSRAEEFELRQKGVPYAEIARKGGGIISTV-RATRAASEDQLFELAL 59
Query: 129 LCGIELIHSGVTCFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDD 188
LI GVT E + + +++L + L ++ + + +
Sbjct: 60 PRVKSLIREGVTTV-EIKSGYGLTLEDELKMLRVARRLGEALPIRVKTTLLAAHAVPPEY 118
Query: 189 CIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFK 248
PDS + A G + + + + A ++
Sbjct: 119 RDDPDSWVETICQ-------EIIPAAAEAGLADAVDVFCEHIGFSLAQTEQVYLAADQYG 171
Query: 249 TGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRA 308
+ H+ ++ + L H +++ I L+
Sbjct: 172 LAVKGHMDQLSNLG----------------GSTLAANFGALSVDHLEYLDPEGIQALAHR 215
Query: 309 GVKVSHCPASAMRMLG--FAPIKEMLHADICVSLGTDGAP-SNNRMSIVDEMYLASLINK 365
GV + P + + P+ + A + +++ +D P + +S+ M +A +
Sbjct: 216 GVVATLLPTAFYFLKETKLPPVVALRKAGVPMAVSSDINPGTAPIVSLRMAMNMACTLFG 275
Query: 366 GREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIG 404
L + T + A+++ +G
Sbjct: 276 --------------LTPVEAMAGVTRHAARALGEQEQLG 300
|
| >d2puza2 c.1.9.17 (A:80-380) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Score = 80.4 bits (196), Expect = 2e-17
Identities = 47/345 (13%), Positives = 107/345 (31%), Gaps = 63/345 (18%)
Query: 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIW----------PYESNMTEEDSYISTLL 129
P ++ H H + + ++ L ++ I +++E L
Sbjct: 1 PALIDCHTHLVFGGNRAMEFEMRLNGATYEEIAKAGGGIVSSVRDTRALSDEVLVAQALP 60
Query: 130 CGIELIHSGVT------CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAV 183
L+ GV+ + + + A L LR + ++ PA +
Sbjct: 61 RLDTLLSEGVSTIEIKSGYGLDIETELKMLRVARRLETLRPVRIVTSYLAAHATPADYKG 120
Query: 184 RTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDM 243
R D L A+G G + + + + +
Sbjct: 121 RNADYITD--------------VVLPGLEKAHAEGLADAVDGFCEGIAFSVKEIDRVFAA 166
Query: 244 AREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIG 303
A++ + +H ++ ++ N L + H +++ T
Sbjct: 167 AQQRGLPVKLHAEQLSNLGG----------------AELAASYNALSADHLEYLDETGAK 210
Query: 304 LLSRAGVKVSHCPASAMRML--GFAPIKEMLHADICVSLGTDGAP-SNNRMSIVDEMYLA 360
L++AG P + + P++ + A ++L TD P ++ S++ M +
Sbjct: 211 ALAKAGTVAVLLPGAFYALREKQLPPVQALRDAGAEIALATDCNPGTSPLTSLLLTMNMG 270
Query: 361 SLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGS 405
+ + + + E L T N AK++ + G+
Sbjct: 271 ATLFR--------------MTVEECLTATTRNAAKALGLLAETGT 301
|
| >d2paja1 b.92.1.4 (A:10-69,A:406-484) Hypothetical protein GOS_1943094 {Environmental samples} Length = 139 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein GOS 1943094 species: Environmental samples
Score = 72.7 bits (178), Expect = 4e-16
Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 20/133 (15%)
Query: 331 MLHADICVSLGTDGAPSNN-RMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMA 389
++ + G G + R+ D + I + + +A
Sbjct: 4 LIRNAAAIMTGGRGTADDPSRVPGPDIRIVGDTI-------------------DAIGALA 44
Query: 390 TINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCN 449
G V + + + G AD+ V +HD V +V+++
Sbjct: 45 PRPGETIVDATDCVIYVAVGYAADIAVYRLDDPRYFGLHDPAIGPVASGGRPSVMALFSA 104
Query: 450 GQWVMKNKKILLL 462
G+ V+ + I +
Sbjct: 105 GKRVVVDDLIEGV 117
|
| >d2bb0a2 c.1.9.17 (A:74-373) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]} Length = 300 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Bacillus subtilis [TaxId: 1423]
Score = 71.9 bits (174), Expect = 2e-14
Identities = 47/330 (14%), Positives = 90/330 (27%), Gaps = 36/330 (10%)
Query: 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGV 139
PG V+ H H + + R + + SY+ L G I S V
Sbjct: 1 PGLVDPHTH---------------LVFGGSREKEMNLKL-QGISYLDILAQGGG-ILSTV 43
Query: 140 TCFAEAGGQHVSEMAK--AVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSIS 197
A + + + A +L + G + +
Sbjct: 44 KDTRAASEEELLQKAHFHLQRMLSYGTTTAEVKSGYGLEKETELKQLRVAKKLHESQPVD 103
Query: 198 FNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAE 257
+ ++ + D + + + + T
Sbjct: 104 LVSTFMGAHAIPPEYQNDPDDFLDQMLSLLPEIKEQELASFADIFTETGVFTVSQSRRYL 163
Query: 258 IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPA 317
D ++ + + H V + I L+ AG P
Sbjct: 164 QKAAEAGFGLKIHADEIDPLGGAELAGKLKAVSADHLVGTSDEGIKKLAEAGTIAVLLPG 223
Query: 318 SAMRML--GFAPIKEMLHADICVSLGTD-GAPSNNRMSIVDEMYLASLINKGREVFANGT 374
+ + +A + M+ +CVSL TD S+ +I M +A+L K
Sbjct: 224 TTFYLGKSTYARARAMIDEGVCVSLATDFNPGSSPTENIQLIMSIAALHLK--------- 274
Query: 375 TDPAALPAETVLRMATINGAKSVLWDNDIG 404
+ AE + T+N A ++ + G
Sbjct: 275 -----MTAEEIWHAVTVNAAYAIGKGEEAG 299
|
| >d2bb0a1 b.92.1.10 (A:3-73,A:374-415) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Bacillus subtilis [TaxId: 1423]
Score = 67.4 bits (164), Expect = 2e-14
Identities = 20/124 (16%), Positives = 45/124 (36%), Gaps = 19/124 (15%)
Query: 331 MLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMAT 390
+++ +++ + G + M + + E G + + A A
Sbjct: 7 LINIGQLLTMESSGPRAGKSMQDLHVI----------EDAVVGIHEQKIVFAGQKGAEAG 56
Query: 391 INGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNG 450
+ + + +L+AG+ AD+V+ ++ +P Y +V VM NG
Sbjct: 57 YEADEIIDCSGRLVTLKAGRSADLVIWQAPNYMYIP---------YHYGVNHVHQVMKNG 107
Query: 451 QWVM 454
V+
Sbjct: 108 TIVV 111
|
| >d2qs8a2 c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Score = 70.9 bits (171), Expect = 4e-14
Identities = 38/341 (11%), Positives = 85/341 (24%), Gaps = 48/341 (14%)
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
G ++ HVH Q+ + + + + SG T
Sbjct: 1 GLMDMHVHFGQEYQSKAQAPIKVEREMQAILATQH---------------AYVTFKSGFT 45
Query: 141 CFAEAGGQH-----VSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSS 195
+ G + + + +L G R T+ G + DD P
Sbjct: 46 TVRQVGDSGLVAISLRDAINSGKLAGPRIFAAGKTIATTGGHADPTNGKAVDDYDYPVPE 105
Query: 196 ISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMARE------FKT 249
+ + I+I + A + +
Sbjct: 106 QGVVNGPYEVYAAVRQRYKDGADGIKITVTGGVLSVAKSGQNPQFTQEEVDAVVSAAKDY 165
Query: 250 GIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAG 309
G+ + V E VD +E + + + + ++
Sbjct: 166 GMWVAVHAHGAEGMKRAIKAGVDSIEHGTFMDLEAMDLMIENGTYYVPTISAGEFVAEKS 225
Query: 310 VKVSHCPAS------AMRMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLI 363
+ P ++ ++ + ++ GTD + + E
Sbjct: 226 KIDNFFPEIVRPKAASVGPQISDTFRKAYEKGVKIAFGTDAGVQKHG-TNWKEFVYMVE- 283
Query: 364 NKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIG 404
+PA ++ AT+ AK + ++ +G
Sbjct: 284 --------------NGMPAMKAIQSATMETAKLLRIEDKLG 310
|
| >d2i9ua1 b.92.1.4 (A:9-66,A:377-427) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Clostridium acetobutylicum [TaxId: 1488]
Score = 64.1 bits (156), Expect = 2e-13
Identities = 13/93 (13%), Positives = 30/93 (32%), Gaps = 7/93 (7%)
Query: 363 INKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSW 422
+ V +G + G + + N+I E G D +V++ +
Sbjct: 21 MKDSYIVVIDGKIASVSS-----NLPDKYKGNPIIDFRNNIIIFEEGYDFDALVINDSNL 75
Query: 423 PM--VPVHDRITSLVYCMRTENVVSVMCNGQWV 453
+ +R+ +Y N++ G +
Sbjct: 76 YPEDYDLTERLERFIYLGDDRNIMKRYVCGNEI 108
|
| >d3be7a2 c.1.9.18 (A:57-359) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} Length = 303 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Zn-dependent arginine carboxypeptidase species: Unidentified organism [TaxId: 32644]
Score = 67.0 bits (161), Expect = 8e-13
Identities = 32/336 (9%), Positives = 82/336 (24%), Gaps = 45/336 (13%)
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
G +++HVH +KG + + ++ + + +G T
Sbjct: 1 GLMDSHVHIVGNDSKG----------------EESIADSSHMGTVWGVVNAEKTLMAGFT 44
Query: 141 CFAEAGG---------QHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQ 191
G + + + + T + + + +
Sbjct: 45 TVRNVGAANYADVSVRDAIERGVINGPTMLVSGPALGITGGHCDHNLLPPEFNYSSEGVV 104
Query: 192 PDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGI 251
+ V ++K A G + T + D A +
Sbjct: 105 DSPWEARKMVRKNRKYGADLIKFCATGGVMSRNTDVNAKQFTLEEMKAIVDEAHNHGMKV 164
Query: 252 HM--HVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAG 309
H + ++NN + + ++V+ +G ++AG
Sbjct: 165 AAHAHGLIGIKAAIKAGVDSVEHASFIDDETIDMAIKNNTVLSMDIFVSDYILGEGAKAG 224
Query: 310 VKVSHCPASAM-RMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGRE 368
++ + ++ GTD ++ +
Sbjct: 225 IREESLNKERLVGKKQRENFMNAHRRGAIITFGTDAGIFDHG-DNAKQFAYMVE------ 277
Query: 369 VFANGTTDPAALPAETVLRMATINGAKSVLWDNDIG 404
+ ++ +TI A + +IG
Sbjct: 278 ---------WGMTPLEAIQASTIKTATLFGIE-NIG 303
|
| >d1p1ma1 b.92.1.4 (A:1-49,A:331-404) Hypothetical protein TM0936 {Thermotoga maritima [TaxId: 2336]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein TM0936 species: Thermotoga maritima [TaxId: 2336]
Score = 59.6 bits (144), Expect = 1e-11
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 13/106 (12%)
Query: 361 SLINKGREVFANGTTDP--AALPAETVLRMATINGAKSVLWD----NDIGSLEAGKKADM 414
LI K +++P A+ E + G V D + +E G AD+
Sbjct: 6 CLILKDF------SSEPFWGAVEIENGTIKRVLQGEVKVDLDLSGKLVMPKIEEGWNADL 59
Query: 415 VVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKIL 460
VV+D M PV + LV+ V + M G+W+ + +
Sbjct: 60 VVIDLDLPEMFPVQNIKNHLVHAFSG-EVFATMVAGKWIYFDGEYP 104
|
| >d2r8ca2 c.1.9.18 (A:58-368) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Uncharacterized protein EAJ56179 species: Unidentified organism [TaxId: 32644]
Score = 61.6 bits (147), Expect = 4e-11
Identities = 41/344 (11%), Positives = 76/344 (22%), Gaps = 53/344 (15%)
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
G ++ HVH I ++ + L + + ++ G T
Sbjct: 1 GLIDLHVHVV-----AIEFNLPRVATL-----------PNVLVTLRAVPIMRAMLRRGFT 44
Query: 141 CFAEAGGQHVSEMAKAVELLGLRACLVQS------TMDCGEGLPASWAVRTTDDCIQPDS 194
+AGG L L S T + S + C
Sbjct: 45 TVRDAGGAGYPFKQAVESGLVEGPRLFVSGRALSQTGGHADPRARSDYMPPDSPCGCCVR 104
Query: 195 SISFNFVSSSQKELYAKHHHAADGRI-------------RIWFGIRQIMNATDRLLLETR 241
+ V+ E+ + + +
Sbjct: 105 VGALGRVADGVDEVRRAVREELQMGADQIKIMASGGVASPTDPVGVFGYSEDEIRAIVAE 164
Query: 242 DMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTE 301
R H + + ++ T+
Sbjct: 165 AQGRGTYVLAHAYTPAAIARAVRCGVRTIEHGNLIDDETARLVAEHGAYVVPTLVTYDAL 224
Query: 302 IGLLSRAGVKVSHCPASAM-RMLGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLA 360
+ G+ A G I+ M A + + GTD R DE +
Sbjct: 225 ASEGEKYGLPPESIAKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGEAQR-LQSDEFRIL 283
Query: 361 SLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIG 404
+ L V+ ATI A+ + + +G
Sbjct: 284 A----------------EVLSPAEVIASATIVSAEVLGMQDKLG 311
|
| >d2p9ba1 b.92.1.10 (A:9-70,A:395-450) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Uncharacterized protein BL1453 species: Bifidobacterium longum [TaxId: 216816]
Score = 47.5 bits (112), Expect = 2e-07
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQD-RIKAIGQSADILQQFSQMADQIIDLQSQILL 79
L +A IVT DK + RN + V D RI+ + S + +D +I++
Sbjct: 6 FALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIET---SIPAEYHYLDGTGKIVM 62
Query: 80 PGFVNTHVH 88
+
Sbjct: 63 LEVGKSADL 71
|
| >d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Score = 46.5 bits (110), Expect = 3e-07
Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 17/109 (15%)
Query: 345 APSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIG 404
A N M + + A + + A E+ L ++
Sbjct: 11 ATLNPAMDGIGAVENAVIAVRNG--------RIAFAGPESDLPDDLSTADETTDCGGRWI 62
Query: 405 SLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWV 453
+LEAGK AD + D + Y + + + + GQ V
Sbjct: 63 TLEAGKSADFAIWDIERPAELV---------YRIGFNPLHARIFKGQKV 102
|
| >d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Score = 36.8 bits (85), Expect = 7e-04
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 19 STMILHNAVIVTMDKESRVF---RNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQS 75
+T + NA + T++ N + V RI G +D+ S AD+ D
Sbjct: 1 ATALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDLST-ADETTDCGG 59
Query: 76 QILLPGFVNTHVH 88
+ + +
Sbjct: 60 RWITLEAGKSADF 72
|
| >d1yrra2 c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Escherichia coli [TaxId: 562]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain species: Escherichia coli [TaxId: 562]
Score = 49.1 bits (115), Expect = 5e-07
Identities = 34/337 (10%), Positives = 73/337 (21%), Gaps = 53/337 (15%)
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
GF++ ++ V M + SG T
Sbjct: 1 GFIDVQLN--------GCGGVQFNDTAEAVSVETLEIMQKA------------NEKSGCT 40
Query: 141 CFAEAGGQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNF 200
+ E+ K + G L W P+
Sbjct: 41 NYLPTLITTSDELMKQGVRVMREYLAKHPNQALGLHLEGPWLNLVKKGTHNPNFVRKP-- 98
Query: 201 VSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPY 260
+ +A +L ++
Sbjct: 99 ---DAALVDFLCENADVITKVTLAPEMVPAEVISKLANAGIVVSAGHSNATLKEAKAGFR 155
Query: 261 EN-------QVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVS 313
M + E + A + V++ I R
Sbjct: 156 AGITFATHLYNAMPYITGREPGLAGAILDEADIYCGIIADGLHVDYANIRNAKRLKGDKL 215
Query: 314 HCPASAMRMLGF------APIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGR 367
A G K + + + S + +++++ + +L+
Sbjct: 216 CLVTDATAPAGANIEQFIFAGKTIYYRNGLCVDENG-TLSGSSLTMIEGV--RNLVEHCG 272
Query: 368 EVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIG 404
+ + VLRMAT+ A+++ + +G
Sbjct: 273 ------------IALDEVLRMATLYPARAIGVEKRLG 297
|
| >d2uz9a1 b.92.1.4 (A:8-75,A:389-451) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.9 bits (106), Expect = 2e-06
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 15/97 (15%)
Query: 373 GTTDPAALPAETVLRMATINGAK----SVLWDNDIGSLEAGKKADMVVVDPFSWPMV--- 425
A ++A K L ++ E GK+ D ++++P +
Sbjct: 32 SGKIVFLEEASQQEKLAKEWCFKPCEIRELSHHEFFMFEVGKEFDAILINPKASDSPIDL 91
Query: 426 --------PVHDRITSLVYCMRTENVVSVMCNGQWVM 454
I +Y N+ V G+ V+
Sbjct: 92 FYGDFFGDISEAVIQKFLYLGDDRNIEEVYVGGKQVV 128
|
| >d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} Length = 61 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: D-aminoacylase domain: N-acyl-D-aminoacid amidohydrolase species: Alcaligenes faecalis [TaxId: 511]
Score = 42.8 bits (101), Expect = 2e-06
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 406 LEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRG 465
++ G AD+VV DP + V D T R + SV NG V +++ G
Sbjct: 2 VQPGYYADLVVFDPAT-----VADSATFEHPTERAAGIHSVYVNGAAVWEDQSFTGQHAG 56
Query: 466 RL 467
R+
Sbjct: 57 RV 58
|
| >d2r8ca1 b.92.1.9 (A:2-57,A:369-414) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Uncharacterized protein EAJ56179 species: Unidentified organism [TaxId: 32644]
Score = 43.1 bits (101), Expect = 4e-06
Identities = 10/87 (11%), Positives = 28/87 (32%), Gaps = 6/87 (6%)
Query: 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQIL 78
+T + N ++ D + + + + I+ + +ID++ + +
Sbjct: 1 TTFLFRNGALLDPDHP-DLLQGFEILIEDGFIREVSDKPIKSS-----NAHVIDVKGKTI 54
Query: 79 LPGFVNTHVHTSQQLAKGIADDVDLMT 105
+P V + VD +
Sbjct: 55 MPRIVPGAHADVLVVDGNPLKSVDCLL 81
|
| >d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Score = 43.4 bits (102), Expect = 7e-06
Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 11/130 (8%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
+ +VT V + +R+ AIG + + ID ++P
Sbjct: 2 KWIRGGTVVTAADT----YQADVLIEGERVVAIGHQLSV------NGAEEIDATGCYVIP 51
Query: 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVT 140
V + ++ P+E M +S L G ++
Sbjct: 52 IAVGSDADIVIFDPHVKRTLSVETHHMNVDYNPFE-GMEVYGEVVSVLSRGSFVVRDKQF 110
Query: 141 CFAEAGGQHV 150
GQ++
Sbjct: 111 VGQAGSGQYI 120
|
| >d1onwa1 b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidase {Escherichia coli [TaxId: 562]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Isoaspartyl dipeptidase domain: Isoaspartyl dipeptidase species: Escherichia coli [TaxId: 562]
Score = 41.9 bits (98), Expect = 1e-05
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQ 76
++ +L A + + V V +I A+ + + ++DL Q
Sbjct: 6 AAGFTLLQGAHLYAPED----RGICDVLVANGKIIAVASN---IPSDIVPNCTVVDLSGQ 58
Query: 77 ILLPGFVNTHVH 88
IL P + +
Sbjct: 59 ILCPEILPGNDA 70
|
| >d1yrra1 b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6-phosphate deacetylase, NagA {Escherichia coli [TaxId: 562]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Escherichia coli [TaxId: 562]
Score = 40.1 bits (93), Expect = 3e-05
Identities = 11/66 (16%), Positives = 17/66 (25%), Gaps = 8/66 (12%)
Query: 23 LHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGF 82
L I T + + V + IK++ + L IL P
Sbjct: 4 LTQGRIFTGHE---FLDDHAVVIADGLIKSVCP-----VAELPPEIEQRSLNGAILSPTL 55
Query: 83 VNTHVH 88
V
Sbjct: 56 AAGKVA 61
|
| >d3be7a1 b.92.1.9 (A:3-56,A:360-400) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Zn-dependent arginine carboxypeptidase species: Unidentified organism [TaxId: 32644]
Score = 36.7 bits (85), Expect = 7e-04
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 15/76 (19%)
Query: 384 TVLRMATINGAKSVLWDNDI--GSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTE 441
+ A + + I ++ G AD+V V P+ + I +L E
Sbjct: 32 AEIGKINTKDATVISIPDLILIPQIKEGFDADIVGVI-----ENPLAN-IRTL------E 79
Query: 442 NVVSVMCNGQWVMKNK 457
V VM G+ V K +
Sbjct: 80 EVAFVMKEGK-VYKRE 94
|
| >d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Score = 36.7 bits (85), Expect = 8e-04
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 9/54 (16%)
Query: 400 DNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWV 453
+ +L G AD +V W L Y + + +VS + NG+
Sbjct: 57 KGKLVTLRVGMLADFLV-----WNC----GHPAELSYLIGVDQLVSRVVNGEET 101
|
| >d1m7ja1 b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} Length = 55 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: D-aminoacylase domain: N-acyl-D-aminoacid amidohydrolase species: Alcaligenes faecalis [TaxId: 511]
Score = 34.7 bits (80), Expect = 0.001
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80
IL ++ + R V V DRI A+G + A + ID+ +++ P
Sbjct: 4 YILSGGTVIDGT--NAPGRLADVGVRGDRIAAVGDLSAS------SARRRIDVAGKVVSP 55
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 478 | |||
| d2uz9a2 | 313 | Guanine deaminase {Human (Homo sapiens) [TaxId: 96 | 100.0 | |
| d2i9ua2 | 310 | Guanine deaminase {Clostridium acetobutylicum [Tax | 100.0 | |
| d1p1ma2 | 281 | Hypothetical protein TM0936, probable catalytic do | 100.0 | |
| d2paja2 | 336 | Hypothetical protein GOS_1943094 {Environmental sa | 99.96 | |
| d2imra2 | 308 | Hypothetical protein DR0824 {Deinococcus radiodura | 99.93 | |
| d2ooda2 | 325 | Guanine deaminase {Bradyrhizobium japonicum [TaxId | 99.9 | |
| d1ra0a2 | 320 | Cytosine deaminase catalytic domain {Escherichia c | 99.89 | |
| d2bb0a2 | 300 | Imidazolonepropionase {Bacillus subtilis [TaxId: 1 | 99.81 | |
| d2q09a2 | 301 | Probable 4-imidazolone-5-propanoate amidohydrolase | 99.8 | |
| d2puza2 | 301 | Imidazolonepropionase {Agrobacterium tumefaciens [ | 99.79 | |
| d2p9ba2 | 324 | Uncharacterized protein BL1453 {Bifidobacterium lo | 99.71 | |
| d2p9ba1 | 118 | Uncharacterized protein BL1453 {Bifidobacterium lo | 99.69 | |
| d2qs8a2 | 310 | Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: | 99.68 | |
| d3be7a2 | 303 | Zn-dependent arginine carboxypeptidase {Unidentifi | 99.68 | |
| d1yrra1 | 85 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 99.62 | |
| d2r8ca2 | 311 | Uncharacterized protein EAJ56179 {Unidentified org | 99.6 | |
| d1p1ma1 | 123 | Hypothetical protein TM0936 {Thermotoga maritima [ | 99.58 | |
| d2paja1 | 139 | Hypothetical protein GOS_1943094 {Environmental sa | 99.57 | |
| d1onwa1 | 105 | Isoaspartyl dipeptidase {Escherichia coli [TaxId: | 99.56 | |
| d1gkpa2 | 335 | D-hydantoinase {Thermus sp. [TaxId: 275]} | 99.56 | |
| d1kcxa2 | 334 | Dihydropyrimidinase related protein-1 {Mouse (Mus | 99.5 | |
| d1nfga1 | 127 | D-hydantoinase {Burkholderia pickettii [TaxId: 329 | 99.49 | |
| d1ejxc1 | 181 | alpha-Subunit of urease {Klebsiella aerogenes [Tax | 99.49 | |
| d2r8ca1 | 102 | Uncharacterized protein EAJ56179 {Unidentified org | 99.48 | |
| d2bb0a1 | 113 | Imidazolonepropionase {Bacillus subtilis [TaxId: 1 | 99.45 | |
| d1ynya2 | 332 | D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | 99.45 | |
| d1ynya1 | 127 | D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | 99.45 | |
| d2fvka1 | 156 | Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc | 99.44 | |
| d2ftwa2 | 334 | Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli | 99.42 | |
| d2qs8a1 | 96 | Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: | 99.42 | |
| d1k1da1 | 128 | D-hydantoinase {Bacillus stearothermophilus [TaxId | 99.4 | |
| d1nfga2 | 330 | D-hydantoinase {Burkholderia pickettii [TaxId: 329 | 99.38 | |
| d2icsa2 | 267 | Putative adenine deaminase EF0837 {Enterococcus fa | 99.34 | |
| d1m7ja1 | 55 | N-acyl-D-aminoacid amidohydrolase {Alcaligenes fae | 99.34 | |
| d1i0da_ | 331 | Phosphotriesterase (parathion hydrolase, PTE) {Pse | 99.3 | |
| d1gkra2 | 325 | L-hydantoinase {Arthrobacter aurescens [TaxId: 436 | 99.3 | |
| d1gkra1 | 126 | L-hydantoinase {Arthrobacter aurescens [TaxId: 436 | 99.3 | |
| d1yrra2 | 297 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 99.3 | |
| d2fvka2 | 384 | Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc | 99.29 | |
| d2vhla1 | 91 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 99.28 | |
| d1gkpa1 | 123 | D-hydantoinase {Thermus sp. [TaxId: 275]} | 99.25 | |
| d1m7ja2 | 61 | N-acyl-D-aminoacid amidohydrolase {Alcaligenes fae | 99.2 | |
| d4ubpc2 | 390 | alpha-subunit of urease, catalytic domain {Bacillu | 99.2 | |
| d3be7a1 | 95 | Zn-dependent arginine carboxypeptidase {Unidentifi | 99.15 | |
| d2i9ua1 | 109 | Guanine deaminase {Clostridium acetobutylicum [Tax | 99.12 | |
| d1xrta2 | 310 | Two-domain dihydroorotase {Aquifex aeolicus [TaxId | 99.08 | |
| d1kcxa1 | 142 | Dihydropyrimidinase related protein-1 {Mouse (Mus | 99.05 | |
| d1e9yb2 | 389 | alpha-subunit of urease, catalytic domain {Helicob | 99.05 | |
| d1m7ja3 | 358 | N-acyl-D-aminoacid amidohydrolase, catalytic domai | 99.02 | |
| d1onwa2 | 284 | Isoaspartyl dipeptidase, catalytic domain {Escheri | 98.99 | |
| d2amxa1 | 357 | Adenosine deaminase (ADA) {Plasmodium yoelii [TaxI | 98.91 | |
| d2ftwa1 | 150 | Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli | 98.91 | |
| d1bf6a_ | 291 | Phosphotriesterase homology protein {Escherichia c | 98.9 | |
| d2vhla2 | 301 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 98.83 | |
| d1xrta1 | 112 | Two-domain dihydroorotase {Aquifex aeolicus [TaxId | 98.76 | |
| d1e9yb1 | 180 | alpha-Subunit of urease {Helicobacter pylori [TaxI | 98.7 | |
| d4ubpc1 | 180 | alpha-Subunit of urease {Bacillus pasteurii [TaxId | 98.64 | |
| d1a4ma_ | 349 | Adenosine deaminase (ADA) {Mouse (Mus musculus) [T | 98.56 | |
| d2puza1 | 103 | Imidazolonepropionase {Agrobacterium tumefaciens [ | 98.55 | |
| d1o12a2 | 288 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 98.49 | |
| d2puza1 | 103 | Imidazolonepropionase {Agrobacterium tumefaciens [ | 98.43 | |
| d2eg6a1 | 343 | Dihydroorotase {Escherichia coli [TaxId: 562]} | 98.38 | |
| d1ejxc2 | 385 | alpha-subunit of urease, catalytic domain {Klebsie | 98.33 | |
| d2q09a1 | 103 | Probable 4-imidazolone-5-propanoate amidohydrolase | 98.32 | |
| d2ooda1 | 140 | Guanine deaminase {Bradyrhizobium japonicum [TaxId | 98.23 | |
| d1yixa1 | 265 | Putative deoxyribonuclease YcfH {Escherichia coli | 98.15 | |
| d2uz9a1 | 131 | Guanine deaminase {Human (Homo sapiens) [TaxId: 96 | 98.13 | |
| d1kcxa1 | 142 | Dihydropyrimidinase related protein-1 {Mouse (Mus | 98.1 | |
| d1xrta1 | 112 | Two-domain dihydroorotase {Aquifex aeolicus [TaxId | 98.07 | |
| d2ftwa1 | 150 | Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli | 98.06 | |
| d1zzma1 | 259 | Putative deoxyribonuclease YjjV {Escherichia coli | 98.04 | |
| d1xwya1 | 260 | Deoxyribonuclease TatD (MttC) {Escherichia coli [T | 97.86 | |
| d1j6oa_ | 260 | Hypothetical protein TM0667 {Thermotoga maritima [ | 97.74 | |
| d2q09a1 | 103 | Probable 4-imidazolone-5-propanoate amidohydrolase | 97.68 | |
| d1o12a1 | 76 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 97.67 | |
| d1gkra1 | 126 | L-hydantoinase {Arthrobacter aurescens [TaxId: 436 | 97.66 | |
| d2icsa1 | 101 | Putative adenine deaminase EF0837 {Enterococcus fa | 96.62 | |
| d1k1da1 | 128 | D-hydantoinase {Bacillus stearothermophilus [TaxId | 96.13 | |
| d1ra0a1 | 103 | Cytosine deaminase {Escherichia coli [TaxId: 562]} | 96.13 | |
| d1gkpa1 | 123 | D-hydantoinase {Thermus sp. [TaxId: 275]} | 96.1 | |
| d2icsa1 | 101 | Putative adenine deaminase EF0837 {Enterococcus fa | 96.09 | |
| d1nfga1 | 127 | D-hydantoinase {Burkholderia pickettii [TaxId: 329 | 96.07 | |
| d1o12a1 | 76 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 95.88 | |
| d2a3la1 | 628 | AMP deaminase (AMPD), catalytic domain {Thale cres | 95.8 | |
| d1ynya1 | 127 | D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | 95.21 | |
| d2ffia1 | 271 | Putative 2-pyrone-4,6-dicarboxylic acid hydrolase | 94.38 | |
| d2dvta1 | 325 | Thermophilic reversible gamma-resorcylate decarbox | 93.8 | |
| d2qs8a1 | 96 | Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: | 92.87 | |
| d2ooda1 | 140 | Guanine deaminase {Bradyrhizobium japonicum [TaxId | 92.35 | |
| d3be7a1 | 95 | Zn-dependent arginine carboxypeptidase {Unidentifi | 90.73 | |
| d1v77a_ | 202 | Ribonuclease P protein component 3, Rnp3 {Pyrococc | 90.26 |
| >d2uz9a2 c.1.9.9 (A:76-388) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.2e-33 Score=261.30 Aligned_cols=308 Identities=23% Similarity=0.370 Sum_probs=245.8
Q ss_pred ecccccccccchhhhccccCCCCchHHhhhccccccCCCChHHH-HHHHHHHHHHHHhcCcceeecCCccCHH---HHHH
Q 011766 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDS-YISTLLCGIELIHSGVTCFAEAGGQHVS---EMAK 155 (478)
Q Consensus 80 PGfID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~GvTtv~~~~~~~~~---~~~~ 155 (478)
|||||+|+|+.+..+++...+.++.+|+....|+.+..+...+. +........+++++|+|++.+++..... ...+
T Consensus 1 PGfIdaH~Hl~~~~~~g~~~~~~l~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~tt~~~~~~~~~~~~~~~~~ 80 (313)
T d2uz9a2 1 PGLVDTHIHASQYSFAGSSIDLPLLEWLTKYTFPAEHRFQNIDFAEEVYTRVVRRTLKNGTTTACYFATIHTDSSLLLAD 80 (313)
T ss_dssp ECEEEEEEEGGGGGGTTSCCCSCHHHHHHHTHHHHHHGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSCHHHHHHHHH
T ss_pred CCCCcHhhChhhhhhhhccCCCCHHHHHHHhHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCeEeeecccccccchhHHHH
Confidence 99999999999999999888999999998888877766665443 4455567888999999999987654433 3445
Q ss_pred HHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHH
Q 011766 156 AVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDR 235 (478)
Q Consensus 156 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (478)
.....|++..............+.. ....+..+. ...+++++......+.++....++..+..+++
T Consensus 81 a~~~~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~~------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e 146 (313)
T d2uz9a2 81 ITDKFGQRAFVGKVCMDLNDTFPEY--KETTEESIK------------ETERFVSEMLQKNYSRVKPIVTPRFSLSCSET 146 (313)
T ss_dssp HHHHHTCEEEEECEECSCCSSSTTS--CCCHHHHHH------------HHHHHHHHHHHHTCSSEEEEEEECCGGGCCHH
T ss_pred HHHHhCCcccccceeccCCcccchh--hhhHHHHHH------------HHHHHHHHhhcccccceeEEEeccccccccHH
Confidence 6678899988776555443222111 111111122 55566666666677889988999999999999
Q ss_pred HHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEEC
Q 011766 236 LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHC 315 (478)
Q Consensus 236 ~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~ 315 (478)
.++++.+.|++.++++++|+.+...+...+..........+..+...+.+.++..+.||.++++++++++++.++.+++|
T Consensus 147 ~l~~~~~~a~~~g~~~~~H~~e~~~e~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~H~~~l~~~e~~~l~~~g~~~~~~ 226 (313)
T d2uz9a2 147 LMGELGNIAKTRDLHIQSHISENRDEVEAVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLSAEELNVFHERGASIAHC 226 (313)
T ss_dssp HHHHHHHHHHHHTCEEEEEESCSHHHHHHHHHHSTTSSSHHHHHHHTTCCSTTEEEEECTTCCHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHHhhccccceeeehhcchhHHHHHHHhhcccCChHHHHHHcCCcCCcceEEeeeecchhHHHHHhhhccccccc
Confidence 99999999999999999999998887777766666666788899999999999999999999999999999999999999
Q ss_pred ccchhhc-cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHH
Q 011766 316 PASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGA 394 (478)
Q Consensus 316 p~~~~~~-~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA 394 (478)
|..++.. .+.+|++++.++|+++++|||+.+ +++.+++.+|+.+......... ......++|++|+|+++|.|+|
T Consensus 227 P~~~~~~~~~~~~v~~l~~~Gv~valGTD~~~-~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~e~l~~AT~ngA 302 (313)
T d2uz9a2 227 PNSNLSLSSGFLNVLEVLKHEVKIGLGTDVAG-GYSYSMLDAIRRAVMVSNILLI---NKVNEKSLTLKEVFRLATLGGS 302 (313)
T ss_dssp HHHHHHTTCCCCCHHHHHHTTCEEEECCCTTT-SCCCCHHHHHHHHHHHHHHHHH---TTSSSSCCCHHHHHHHHTHHHH
T ss_pred chhhhhccccccchhhhhccCceEEEeCCCCC-CCCCCHHHHHHHHHHHHHHHhh---cCCCCCCCCHHHHHHHHHHHHH
Confidence 9999887 778999999999999999999754 4678999999988765432111 1123446999999999999999
Q ss_pred HHcCCCCCccc
Q 011766 395 KSVLWDNDIGS 405 (478)
Q Consensus 395 ~~lgl~~~~G~ 405 (478)
++||+++++|+
T Consensus 303 ~aLg~~~~iGS 313 (313)
T d2uz9a2 303 QALGLDGEIGN 313 (313)
T ss_dssp HHTTCTTTSSS
T ss_pred HHhCCCCCcCc
Confidence 99999998986
|
| >d2i9ua2 c.1.9.9 (A:67-376) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Clostridium acetobutylicum [TaxId: 1488]
Probab=100.00 E-value=2.5e-32 Score=254.67 Aligned_cols=304 Identities=23% Similarity=0.278 Sum_probs=238.3
Q ss_pred ecccccccccchhhhccccCCCCchHHhhhccccccCCCChHHHHH-HHHHHHHHHHhcCcceeecCCccCH---HHHHH
Q 011766 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYI-STLLCGIELIHSGVTCFAEAGGQHV---SEMAK 155 (478)
Q Consensus 80 PGfID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~GvTtv~~~~~~~~---~~~~~ 155 (478)
|||||+|+|+.++.+++...+.++.+|+..++|+.+..+.+++.+. .....+.+++++|||++.++..... .....
T Consensus 1 PG~vdaH~H~~~~~~rg~~~~~~l~~wl~~~~~p~~~~~~~~d~~~~~~~~~~~e~l~~GtTtv~d~~~~~~~~~~~~~~ 80 (310)
T d2i9ua2 1 PGMNDLHAHASQYKNLGIGMDKELLPWLNNYTFPEEAKFLNVDYAKKTYGRLIKDLIKNGTTRVALFATLHKDSTIELFN 80 (310)
T ss_dssp ECEEEEEEEGGGGGGTTCCCSSCHHHHHHHTHHHHHHGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSCHHHHHHHHH
T ss_pred CCCEehhhChhhhhhhhccCCCCHHHHHHHhHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCcceeeeeccchhhhHHHHH
Confidence 9999999999999999999999999999998888776666555443 4455778999999999998765443 34567
Q ss_pred HHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHH
Q 011766 156 AVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDR 235 (478)
Q Consensus 156 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (478)
.....|++........+.+.... ........+. ...+.++++... ...+...++++..+.++++
T Consensus 81 a~~~~gir~~~~~~~~~~~~~~~---~~~~~~~~l~------------~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~e 144 (310)
T d2i9ua2 81 MLIKSGIGAYVGKVNMDYNCPDY---LTENYITSLN------------DTEEIILKYKDK-SNIVKPIITPRFVPSCSNE 144 (310)
T ss_dssp HHHHHTCEEEEECEECCSSCCTT---SCCCHHHHHH------------HHHHHHHHHTTT-CSSEEECBEECCGGGCCHH
T ss_pred HHHHhCccccccceeccCCcccc---chhhHHHHHH------------HHHHHHHHhhcc-ccccceeecccCCCccCHH
Confidence 77889999988776655432111 0111111111 444555555443 4567777899999999999
Q ss_pred HHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCC-CeeeeeeccCChhHHHHHHhcCCeEEE
Q 011766 236 LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQN-NLLSAHTVWVNHTEIGLLSRAGVKVSH 314 (478)
Q Consensus 236 ~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~i~h~~~~~~~~~~~~~~~~~~~~~ 314 (478)
.++.+.+.++++++++++|+.+...+.......++........+...+.+.. +.++.|+.++++++++++++.|+.+++
T Consensus 145 ~~~~~~~~a~~~~~~~~~H~~E~~~e~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~H~~~~~~~~i~~la~~g~~vv~ 224 (310)
T d2i9ua2 145 LMDGLGKLSYKYRLPVQSHLSENLDEIAVVKSLHKKSNFYGEVYDKFGLFGNTPTLMAHCIHSSKEEINLIKRNNVTIVH 224 (310)
T ss_dssp HHHHHHHHHHHHTCCEEEEESCCHHHHHHHHHHCTTCSSHHHHHHHTTCSSSSCEEEEECCSCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhhccccceeehhccchHHHHHHHHHhcccccHHHHHHhcCCccCCceeeeeeeeechhHHHHHHhcCCEEEE
Confidence 9999999999999999999999998888777777766666778888888765 477899999999999999999999999
Q ss_pred Cccchhhc-cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHH
Q 011766 315 CPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATING 393 (478)
Q Consensus 315 ~p~~~~~~-~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~p 393 (478)
||.+|+++ .+.+|+++|+++|++|++|||+.+. ++.+++++|+.+....+..... .......++++|+|+++|.++
T Consensus 225 cP~sn~~l~~g~~pv~~l~~~Gv~v~lGTD~~~~-~~~dm~~~m~~a~~~~~~~~~~--~~~~~~~l~~~e~l~~aT~~g 301 (310)
T d2i9ua2 225 CPTSNFNLGSGMMPVRKYLNLGINVVLGSDISAG-HTCSLFKVIAYAIQNSKIKWQE--SGKKDMFLSTSEAFYMATKKG 301 (310)
T ss_dssp CHHHHHHTTCCCCCHHHHHHTTCEEEECCCBTTB-CCSCHHHHHHHHHHHHHHHHHH--TTSCSCCCCHHHHHHHHTHHH
T ss_pred eecccccccCCcccccchhccCceEEEecCCCCC-CCCCHHHHHHHHHHHHHHhhcc--ccCCCCCCCHHHHHHHHHHHH
Confidence 99999887 7899999999999999999998665 5689999999887665422111 111234589999999999999
Q ss_pred HHHcCCCCCccc
Q 011766 394 AKSVLWDNDIGS 405 (478)
Q Consensus 394 A~~lgl~~~~G~ 405 (478)
|+++| ++|+
T Consensus 302 A~alG---riGS 310 (310)
T d2i9ua2 302 GSFFG---KVGS 310 (310)
T ss_dssp HTTTS---SCSS
T ss_pred HHHhc---CCCC
Confidence 99998 3664
|
| >d1p1ma2 c.1.9.9 (A:50-330) Hypothetical protein TM0936, probable catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein TM0936, probable catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.5e-32 Score=252.03 Aligned_cols=278 Identities=30% Similarity=0.498 Sum_probs=235.5
Q ss_pred cccccccccchhhhccccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCHHHHHHHHHHh
Q 011766 81 GFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVELL 160 (478)
Q Consensus 81 GfID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~ 160 (478)
||||+|+|+.++.+++...+.++.+|+....++.+..+++++.+........+++++|+||+.|.. .......+.....
T Consensus 1 GLVnaH~Hl~~~~~rg~~~~~~l~~wl~~~~~~~~~~~t~e~~~~~~~~~~~e~l~~G~Ttv~d~~-~~~~~~~~a~~~~ 79 (281)
T d1p1ma2 1 ALFNTHTHAPMTLLRGVAEDLSFEEWLFSKVLPIEDRLTEKMAYYGTILAQMEMARHGIAGFVDMY-FHEEWIAKAVRDF 79 (281)
T ss_dssp CEEEEEECGGGGGGTTSSCSCCHHHHHHTTHHHHHTTCCHHHHHHHHHHHHHHHHTTTEEEEEEEE-SSHHHHHHHHHHH
T ss_pred CcEehhhCHhHHHHHhccCCCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhCCeEEEeeec-cCcHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999999999975 3467778889999
Q ss_pred CCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHHH
Q 011766 161 GLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLET 240 (478)
Q Consensus 161 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (478)
|++...+....+.... .....+ +..+.++++.. .++.+...+.++..++++++.++++
T Consensus 80 g~r~~~~~~~~~~~~~---------~~~~~~------------e~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~ 137 (281)
T d1p1ma2 80 GMRALLTRGLVDSNGD---------DGGRLE------------ENLKLYNEWNG-FEGRIFVGFGPHSPYLCSEEYLKRV 137 (281)
T ss_dssp CCEEEEEEEECCBTTB---------CTTHHH------------HHHHHHHHHTT-GGGTEEEEEEECCTTTSCHHHHHHH
T ss_pred CCceEEeeeeeecCcc---------ccccHH------------HHHHHHHHhcC-ccCceEEEEecccchhhhhhhhHHH
Confidence 9999888766543211 011112 55556666544 3467888899999999999999999
Q ss_pred HHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEECccchh
Q 011766 241 RDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHCPASAM 320 (478)
Q Consensus 241 ~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~p~~~~ 320 (478)
.++|++.++++++|+.+...+. .....+...+.+.+++++.|+.++++++++++++.|+.+++||.+++
T Consensus 138 ~~~A~~~~~~i~iH~~e~~~e~-----------~~~~~l~~~g~l~~~~~~~H~~~~~~~di~~la~~~~~vv~cP~sn~ 206 (281)
T d1p1ma2 138 FDTAKSLNAPVTIHLYETSKEE-----------YDLEDILNIGLKEVKTIAAHCVHLPERYFGVLKDIPFFVSHNPASNL 206 (281)
T ss_dssp HHHHHHTTCCEEEEESCSTTCC-----------CCTHHHHTTTTTTSCEEEEECTTCCGGGTTTTTTSSEEEEECHHHHH
T ss_pred HHHHhccCccccccccCCcccc-----------hhHHHHHHcCCCCccccccceeeecHHHHHHHHhcCCccccccchhh
Confidence 9999999999999998865432 24566778899999999999999999999999999999999999998
Q ss_pred hc-cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCC
Q 011766 321 RM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLW 399 (478)
Q Consensus 321 ~~-~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl 399 (478)
.. .+.+|+++++++|+++++|||+.+++.+.+++++|+.+....+.+ ....++.+++|+++|.|+|++||+
T Consensus 207 ~lg~~~~~~~~~~~~Gv~v~LGTD~~~s~~~~d~~~em~~a~~~~~~~--------~~~~~~~~~~l~~aT~~gA~aLGl 278 (281)
T d1p1ma2 207 KLGNGIAPVQRMIEHGMKVTLGTDGAASNNSLNLFFEMRLASLLQKAQ--------NPRNLDVNTCLKMVTYDGAQAMGF 278 (281)
T ss_dssp HTTCCCCCHHHHHHTTCEEEECCCCTTTTSCCCHHHHHHHHHHHHHTT--------CTTSSCHHHHHHHHTHHHHHHHTC
T ss_pred hhcccchhHHHHHhCCCeEEEECCCCCCCCCcCHHHHHHHHHHHHHhc--------CCCCCCHHHHHHHHHHHHHHHhCC
Confidence 87 688999999999999999999887777889999999988765422 234589999999999999999999
Q ss_pred C
Q 011766 400 D 400 (478)
Q Consensus 400 ~ 400 (478)
+
T Consensus 279 ~ 279 (281)
T d1p1ma2 279 K 279 (281)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d2paja2 c.1.9.9 (A:70-405) Hypothetical protein GOS_1943094 {Environmental samples} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein GOS 1943094 species: Environmental samples
Probab=99.96 E-value=7.6e-28 Score=226.94 Aligned_cols=315 Identities=26% Similarity=0.360 Sum_probs=205.0
Q ss_pred ecccccccccchhhhcccc--CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC--------
Q 011766 80 PGFVNTHVHTSQQLAKGIA--DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH-------- 149 (478)
Q Consensus 80 PGfID~H~H~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~-------- 149 (478)
|||||+|+|+.++.+++.. .+.++.+|+....++.+..+++++.+......+.+++++||||++|.+...
T Consensus 1 PGlInaH~Hl~~s~~rg~~~~~~~~l~~wl~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~ 80 (336)
T d2paja2 1 PAWVNTHHHLFQSLLKGEPAGLDATLTPWLAATPYRFRALFDERRFRLAARIGLIELARSGCATVADHNYVYYPGMPFDS 80 (336)
T ss_dssp ECEECCCCCGGGGGCCSCC-----------------CGGGCCHHHHHHHHHHHHHHHHTTTEEEEEECCCCCCTTCSSCH
T ss_pred CCCEehhhChhhhccccccccCCCCHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHhCCCeEEEecccccccccchhH
Confidence 9999999999998888754 466789999998888888999999888999999999999999999975321
Q ss_pred HHHHHHHHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCC--CCCeEEEEecc
Q 011766 150 VSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAA--DGRIRIWFGIR 227 (478)
Q Consensus 150 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 227 (478)
.....+.....|++.................... .... ..................... ...........
T Consensus 81 ~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (336)
T d2paja2 81 SAILFEEAEKLGLRFVLLRGGATQTRQLEADLPT----ALRP----ETLDAYVADIERLAARYHDASPRAMRRVVMAPTT 152 (336)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCSCCCSCSTTSCG----GGCC----CCHHHHHHHHHHHHHHTCCCSTTCSEEEEECCTT
T ss_pred HHHHHHHHHHhCceeEeecceeccCcccccccch----hhhh----hhHHHHHHHHHHHHHHhhhhcccccceeeecccc
Confidence 2345677889999987766554432221111110 0000 000011112233333332222 22233334445
Q ss_pred ccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHh
Q 011766 228 QIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSR 307 (478)
Q Consensus 228 ~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~ 307 (478)
....++++.+....+.+++.+.++++|..+............+ ......+...+.+.......|+.+.++.+++.+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~l~~ 230 (336)
T d2paja2 153 VLYSISPREMRETAAVARRLGLRMHSHLSETVGYQDSAYSMYG--KSPVAFCGEHDWLGSDVWYAHLVKVDADEIALLAQ 230 (336)
T ss_dssp TTTSSCHHHHHHHHHHHHHTTCEEEEECC-------------C--CCHHHHHHHTTCCSTTEEEESCCSCCHHHHHHHHH
T ss_pred cCcccCHHHHHHHHhhhhccCCceeeeccccchhhHHHHHhcC--CccccccccccccccccccccceecchHHHHHHhh
Confidence 5566789999999999999999999999887766555443332 34677888888999999999999999999999999
Q ss_pred cCCeEEECccchhhc-cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhccccccc--------CCCCCCC
Q 011766 308 AGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFA--------NGTTDPA 378 (478)
Q Consensus 308 ~~~~~~~~p~~~~~~-~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 378 (478)
.+..+..||..+.+. .+.++++.++++|++|++|||+.+++++.+++++|+.+....+...... .......
T Consensus 231 ~~~~~~~~p~~~~~~~~~~~~~~~l~~~Gv~valGTD~~~s~~~~d~~~emr~a~~~~r~~~~~~~~~~~~~~~~~~~~~ 310 (336)
T d2paja2 231 TGTGVAHCPQSNGRLGSGICPVREMADAGVPVSIGVDGAASNEAADMISEVHMTWLAQRARLGMLAQPAYRGGSFEGGAG 310 (336)
T ss_dssp HTCEEEECHHHHHCC-----CCTTHHHHTCCEEECCCHHHHCSCCSHHHHHHHHHHHHHHTC------------------
T ss_pred ccccceeccchhhccCccccchhhHHhcCCeEEEEcCCCCCCCcccHHHHHHHHHHHHHHhhccccccccccccccCCCC
Confidence 999999999999887 6788999999999999999998766677899999999887654321110 1112456
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCccc
Q 011766 379 ALPAETVLRMATINGAKSVLWDNDIGS 405 (478)
Q Consensus 379 ~ls~~~al~~~T~~pA~~lgl~~~~G~ 405 (478)
++|++|+|+++|.|+|++||++ ++|+
T Consensus 311 ~~t~~eal~~aT~~gA~aLgld-~iGk 336 (336)
T d2paja2 311 AASIAEVIHWGTAGGARVMGLD-EVGK 336 (336)
T ss_dssp -CCHHHHHHHHTHHHHHHHTCT-TSSC
T ss_pred CCCHHHHHHHHHHHHHHHhCcc-ccCC
Confidence 7999999999999999999995 5663
|
| >d2imra2 c.1.9.16 (A:91-398) Hypothetical protein DR0824 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: DR0824-like domain: Hypothetical protein DR0824 species: Deinococcus radiodurans [TaxId: 1299]
Probab=99.93 E-value=1e-25 Score=209.34 Aligned_cols=281 Identities=20% Similarity=0.240 Sum_probs=212.8
Q ss_pred ecccccccccchhhhccccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCHHHHHHHHHH
Q 011766 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSEMAKAVEL 159 (478)
Q Consensus 80 PGfID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~ 159 (478)
|||||+|+|+.++.+++.. .++.+|+....+.... . +.+......+.+++++|+||+.|... ........+..
T Consensus 1 PGlIdaH~Hl~~s~~~~~~--~~~~~~l~~~~~~~~~-~---~~~~~a~~~~~~~l~~G~Ttv~d~~~-~~~~~~~~~~~ 73 (308)
T d2imra2 1 PPPVNAHTHLDMSAYEFQA--LPYFQWIPEVVIRGRH-L---RGVAAAQAGADTLTRLGAGGVGDIVW-APEVMDALLAR 73 (308)
T ss_dssp SCCCEEEEESSCCHHHHHH--CHHHHTSHHHHHHHTT-C---CHHHHHHHHHHHHHHTTCCCEEEEEC-SHHHHHHHHTC
T ss_pred CCccchhhChhhhCccccC--CCHHHHHHHHHhcccc-c---cHHHHHHHHHHHHHHcCCeEEEehhc-CHHHHHHHHHH
Confidence 9999999999887766543 3566777554433221 1 23455666788999999999999764 34555566677
Q ss_pred hCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHHHHHH
Q 011766 160 LGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDRLLLE 239 (478)
Q Consensus 160 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (478)
.+++........... +. ..+.... ...+.++.+.......++.....+..+.++.+....
T Consensus 74 ~~~~~~~~~~~~~~~---~~-----~~~~~~~------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 133 (308)
T d2imra2 74 EDLSGTLYFEVLNPF---PD-----KADEVFA------------AARTHLERWRRLERPGLRLGLSPHTPFTVSHRLMRL 133 (308)
T ss_dssp TTCCEEEEEEECBCC---GG-----GHHHHHH------------HHHHHHHHHHTTCBTTEEEEEEECCSSSBCHHHHHH
T ss_pred hCcCeEEEeeecCCC---CC-----CHHHHHH------------HHHHHHHHHhccCCCceEEeeecccccccchHHHHH
Confidence 777776654333211 00 0011111 456666777676677788888889999999999999
Q ss_pred HHHHHHHcCCceeEeccCChhhhHHHhhhcCC------------------------CCchHHHHhhhCCCCCCeeeeeec
Q 011766 240 TRDMAREFKTGIHMHVAEIPYENQVVMDTRKV------------------------DHGTVTFLDKIEFLQNNLLSAHTV 295 (478)
Q Consensus 240 ~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~------------------------~~~~~~~l~~~~~~~~~~~i~h~~ 295 (478)
..+.++..+.++..|..+.............. ...+++.+...+.+..+..+.|+.
T Consensus 134 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~g~l~~~~~~~h~~ 213 (308)
T d2imra2 134 LSDYAAGEGLPLQIHVAEHPTELEMFRTGGGPLWDNRMPALYPHTLAEVIGREPGPDLTPVRYLDELGVLAARPTLVHMV 213 (308)
T ss_dssp HHHHHHHHTCCBEEEESCSHHHHHHHHHSCSTTGGGSCGGGSCSSHHHHHTSCCCTTCCHHHHHHHHTCGGGCCEEEECC
T ss_pred HhhhccccCccceeeeecccchhhhhhhhccchhhhhhhhhhHHHhhhhhhcccccCCCHHHHHHHCCCCCCCeeeeecc
Confidence 99999999999999999877666555433221 123567888889999999999999
Q ss_pred cCChhHHHHHHhcCCeEEECccchhhc-cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCC
Q 011766 296 WVNHTEIGLLSRAGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGT 374 (478)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (478)
++.+++++++++.+..++.||..+... .+..+++++.++|+++++|||+++.+...+++.+|+.+.....
T Consensus 214 ~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~l~~aGv~valGTD~~~~~~~~~~~~e~~~a~~~~~--------- 284 (308)
T d2imra2 214 NVTPDDIARVARAGCAVVTCPRSNHHLECGTFDWPAFAAAGVEVALGTDSVASGETLNVREEVTFARQLYP--------- 284 (308)
T ss_dssp SCCHHHHHHHHHHTCCEEECHHHHHHTTCCCCCHHHHHHTTCCEEECCCCHHHHSCSCTHHHHHHHHHHCT---------
T ss_pred cchhhhhhhhhhcCCccccccccccccccccchHHHHHHCCCcEEEECCCCCCCCchhHHHHHHHHHHHcC---------
Confidence 999999999999999999999998877 7789999999999999999998665566788999998876532
Q ss_pred CCCCCCCHHHHHHHHhHHHHHHcCCC
Q 011766 375 TDPAALPAETVLRMATINGAKSVLWD 400 (478)
Q Consensus 375 ~~~~~ls~~~al~~~T~~pA~~lgl~ 400 (478)
+|++.|+|+++|.|+|++||+.
T Consensus 285 ----g~tp~e~l~~aT~~gA~~LGl~ 306 (308)
T d2imra2 285 ----GLDPRVLVRAAVKGGQRVVGGR 306 (308)
T ss_dssp ----TSCHHHHHHHHHHHHHHHHC--
T ss_pred ----CCCHHHHHHHHHHHHHHHhCCC
Confidence 5999999999999999999983
|
| >d2ooda2 c.1.9.9 (A:73-397) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.90 E-value=4.4e-23 Score=192.57 Aligned_cols=307 Identities=21% Similarity=0.312 Sum_probs=213.8
Q ss_pred ecccccccccchhhhccccCCCCchHHhhhccccccCCCChHHHH-HHHHHHHHHHHhcCcceeecCCccCHH---HHHH
Q 011766 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSY-ISTLLCGIELIHSGVTCFAEAGGQHVS---EMAK 155 (478)
Q Consensus 80 PGfID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~GvTtv~~~~~~~~~---~~~~ 155 (478)
|||||+|+|+.++.+++.. +.++.+|+...+|+.+..+.+++.. ......+.+++.+|||++.+.++.... ...+
T Consensus 1 PGlID~H~Hl~~~~~~g~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~Tt~~d~~~~~~~~~~~~~~ 79 (325)
T d2ooda2 1 PGFIDGHIHLPQTRVLGAY-GEQLLPWLQKSIYPEEIKYKDRNYAREGVKRFLDALLAAGTTTCQAFTSSSPVATEELFE 79 (325)
T ss_dssp ECEEEEEEEGGGTTCTTCC-SCCHHHHHHHHTHHHHGGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSSHHHHHHHHH
T ss_pred CCCcchhhCccccccccCC-CCcHHHHHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHhCCeEEEeeccccCchhhHHHHH
Confidence 9999999999888777654 4588999988888777666555443 444557888999999999998765433 2334
Q ss_pred HHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccCCHH
Q 011766 156 AVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNATDR 235 (478)
Q Consensus 156 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (478)
.....+.+............ +.. .......... ...+....... ...+............+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 142 (325)
T d2ooda2 80 EASRRNMRVIAGLTGIDRNA--PAE-FIDTPENFYR------------DSKRLIAQYHD--KGRNLYAITPRFAFGASPE 142 (325)
T ss_dssp HHHHHTCCEEECCEECCSSS--CTT-TCCCHHHHHH------------HHHHHHHHHTT--BTTEEEEEEECBGGGCCHH
T ss_pred HHHhhcccceeeeeccCCCC--Ccc-cccCHHHHHH------------HHHHHHHhhcc--ccceeeeeecccccccCHH
Confidence 55666776665544433211 100 0000111000 12222222222 2334444556666667777
Q ss_pred HHHHHHH-HHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEE
Q 011766 236 LLLETRD-MAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 314 (478)
Q Consensus 236 ~l~~~~~-~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~ 314 (478)
....... .+...++.++.|+.+...+.................+...+....+....|+.++.++++.++.+.+.....
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (325)
T d2ooda2 143 LLKACQRLKHEHPDCWVNTHISENPAECSGVLVEHPDCQDYLGVYEKFDLVGPKFSGGHGVYLSNNEFRRMSKKGAAVVF 222 (325)
T ss_dssp HHHHHHHHHHHCTTSEEEEECSCCHHHHHHHHHHCTTCSSHHHHHHTTTCCSTTEEEECCTTCCHHHHHHHHHHTCEEEE
T ss_pred HHHHHHhhHhhccCCceeeehhccHHHHHHHHHhcccCcchHHHHHhcCcccCceeeeeeeeechhhhhhhhcccccccc
Confidence 6555555 444468889999999888877777776666667788888888888999999999999999999999999999
Q ss_pred Cccchhhc-cCCCcHHHHH--HCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCC----------CCCCCCC
Q 011766 315 CPASAMRM-LGFAPIKEML--HADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGT----------TDPAALP 381 (478)
Q Consensus 315 ~p~~~~~~-~~~~~~~~~~--~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ls 381 (478)
+|..+... .+..+.+.+. +.|++++++||.... +..+++.+|+.+.............. ..+.+||
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~gtD~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~ 301 (325)
T d2ooda2 223 CPCSNLFLGSGLFRLGRATDPEHRVKMSFGTDVGGG-NRFSMISVLDDAYKVGMCNNTLLDGSIDPSRKDLAEAERNKLS 301 (325)
T ss_dssp CHHHHHHTTCCCCCHHHHTCTTSCCEEEECCCBTTB-SCCCHHHHHHHHHHHHHHHHHHSSSSSCGGGCCHHHHHHTCCC
T ss_pred ccchhhccccccCcHHHHHHhhcCCceEeecCcccC-CCccHHHHHHHHHHHHHhhcccccccccchhhhhhccccCCCC
Confidence 99887766 5677777664 689999999998654 56789999988765433211111111 0235799
Q ss_pred HHHHHHHHhHHHHHHcCCCCCccc
Q 011766 382 AETVLRMATINGAKSVLWDNDIGS 405 (478)
Q Consensus 382 ~~~al~~~T~~pA~~lgl~~~~G~ 405 (478)
+.|+|+++|.|||++||+++++|+
T Consensus 302 ~~eal~~AT~ngA~aLG~~d~iGS 325 (325)
T d2ooda2 302 PYRGFWSVTLGGAEGLYIDDKLGN 325 (325)
T ss_dssp HHHHHHHTTHHHHHHTTCTTTSSS
T ss_pred HHHHHHHHHHHHHHHhCCCcccCc
Confidence 999999999999999999999996
|
| >d1ra0a2 c.1.9.5 (A:56-375) Cytosine deaminase catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Cytosine deaminase catalytic domain domain: Cytosine deaminase catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.6e-23 Score=194.98 Aligned_cols=289 Identities=15% Similarity=0.149 Sum_probs=181.5
Q ss_pred ccccccccchhhhcccc---CCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccC---HHH---
Q 011766 82 FVNTHVHTSQQLAKGIA---DDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQH---VSE--- 152 (478)
Q Consensus 82 fID~H~H~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~---~~~--- 152 (478)
|||+|+|+.+....+.. ....+.+|+... ......++.++.+......+.+++++|||++.+.+... ...
T Consensus 2 FID~H~Hl~~~~~~~~~~~~~~g~l~e~i~~~-~~~~~~~t~ed~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~ 80 (320)
T d1ra0a2 2 FVEPHIHLDTTQTAGQPNWNQSGTLFEGIERW-AERKALLTHDDVKQRAWQTLKWQIANGIQHVRTHVDVSDATLTALKA 80 (320)
T ss_dssp EEEEEECTTTTTCTTSSSCCSSCCHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHHTTEEEEEEEEECCSTTCHHHHH
T ss_pred CeecCcCcchhcccCCCCCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHhCCeEEEEeccccccchHHHHHH
Confidence 99999999776554432 345567777543 34456788888888888899999999999999865322 111
Q ss_pred HHHHHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEEEeccccccC
Q 011766 153 MAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIWFGIRQIMNA 232 (478)
Q Consensus 153 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (478)
...................... +. .... .....+++....+................
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (320)
T d1ra0a2 81 MLEVKQEVAPWIDLQIVAFPQE-GI----------LSYP------------NGEALLEEALRLGADVVGAIPHFEFTREY 137 (320)
T ss_dssp HHHHHHHHTTTCEEEEEEECTT-CS----------SSST------------THHHHHHHHHHTTCSEECCCGGGSSSHHH
T ss_pred HHHHHHhhcccccccccccccc-cc----------cCcH------------HHHHHHHHHHHhcccccccCCCCCCCccc
Confidence 1111122222211111111110 00 0001 23333434333333322211111222234
Q ss_pred CHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeee-------eeccCChhHHHHH
Q 011766 233 TDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSA-------HTVWVNHTEIGLL 305 (478)
Q Consensus 233 ~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~-------h~~~~~~~~~~~~ 305 (478)
+++.+..+++.|++.++++++|+.+........... ......... +..+..+. |+..+.++++.++
T Consensus 138 ~~~~~~~~~~~A~~~g~~~~~h~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (320)
T d1ra0a2 138 GVESLHKTFALAQKYDRLIDVHCDEIDDEQSRFVET------VAALAHHEG-MGARVTASHTTAMHSYNGAYTSRLFRLL 210 (320)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECCSSCTTCCHHHH------HHHHHHHHT-CGGGEEEEECGGGGGSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCeeeeecccchhHHHhhhh------HHHHHHHhh-cccccccccceeccccchhhhHHHHHHh
Confidence 577888999999999999999987655433221110 111111111 12223333 4444556788899
Q ss_pred HhcCCeEEECccchhhc----------cCCCcHHHHHHCCCcEEEcCCCCCC----CCCcCHHHHHHHHHHHhccccccc
Q 011766 306 SRAGVKVSHCPASAMRM----------LGFAPIKEMLHADICVSLGTDGAPS----NNRMSIVDEMYLASLINKGREVFA 371 (478)
Q Consensus 306 ~~~~~~~~~~p~~~~~~----------~~~~~~~~~~~~gv~v~~gsD~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 371 (478)
.+.++.++.+|..++.. .+..+.+.+.+.|++++++||+... ..+.+++++|+.+.....
T Consensus 211 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~gtd~~~~~~~~~~~~~~~~~~~~~~~~~~------ 284 (320)
T d1ra0a2 211 KMSGINFVANPLVNIHLQGRFDTYPKRRGITRVKEMLESGINVCFGHDGVFDPWYPLGTANMLQVLHMGLHVCQ------ 284 (320)
T ss_dssp HHHTCEEEECHHHHHHHTTTTCCSSCCCCCCCHHHHHHTTCCEEECCBCSSBTTBSCCCCCHHHHHHHHHHHTT------
T ss_pred hhcCcEEEeccchhhhhcccccccccccccCchhhHhhcCceEeecCCcCCCCCCCCCChhHHHHHHHHHHHhc------
Confidence 99999999999987643 3578999999999999999997542 245788998887765432
Q ss_pred CCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCcccc
Q 011766 372 NGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKAD 413 (478)
Q Consensus 372 ~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~AD 413 (478)
...++|+.|||+++|.|||++||+++ |+|++||+||
T Consensus 285 ----~~~~~s~~eal~~aT~ngA~aLgl~~--Gsi~~Gk~AD 320 (320)
T d1ra0a2 285 ----LMGYGQINDGLNLITHHSARTLNLQD--YGIAAGNSAN 320 (320)
T ss_dssp ----CCSHHHHHGGGGGGTHHHHHHTTCSS--CSSCTTSBCC
T ss_pred ----cCCCCCHHHHHHHHHHHHHHHhCCCC--CccCCCCCcC
Confidence 22358999999999999999999975 9999999998
|
| >d2bb0a2 c.1.9.17 (A:74-373) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Bacillus subtilis [TaxId: 1423]
Probab=99.81 E-value=4.4e-19 Score=162.83 Aligned_cols=152 Identities=23% Similarity=0.236 Sum_probs=119.4
Q ss_pred EeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHH
Q 011766 224 FGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIG 303 (478)
Q Consensus 224 ~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~ 303 (478)
.........+.+.+.++.+.+++.+..+..|+......... ...... ....+.|+.++.++.++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~------------~~~~~~----~~~~~~~~~~~~~~~~~ 209 (300)
T d2bb0a2 146 DIFTETGVFTVSQSRRYLQKAAEAGFGLKIHADEIDPLGGA------------ELAGKL----KAVSADHLVGTSDEGIK 209 (300)
T ss_dssp EEBBCTTSBCHHHHHHHHHHHHHTTCEEEEEECSSSCCSHH------------HHHHHT----TCSEEEECTTCCHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHHhhhhcccccccchhhhHHH------------HHHHHh----CCceEEEeeeccHHHHH
Confidence 34445556688889999999999999999998654332111 111111 23457899999999999
Q ss_pred HHHhcCCeEEECccchhhc--cCCCcHHHHHHCCCcEEEcCCCCC-CCCCcCHHHHHHHHHHHhcccccccCCCCCCCCC
Q 011766 304 LLSRAGVKVSHCPASAMRM--LGFAPIKEMLHADICVSLGTDGAP-SNNRMSIVDEMYLASLINKGREVFANGTTDPAAL 380 (478)
Q Consensus 304 ~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~gv~v~~gsD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 380 (478)
.+.+.+..+..||.++..+ ....+++.+++.|+++++|||+.+ ..+..+++.+|+.+... .||
T Consensus 210 ~~~~~~~~~~~~~~s~~~l~~~~~~~~~~l~~~Gv~v~lgTD~~~~~~~~~~l~~~~~~a~~~--------------~gl 275 (300)
T d2bb0a2 210 KLAEAGTIAVLLPGTTFYLGKSTYARARAMIDEGVCVSLATDFNPGSSPTENIQLIMSIAALH--------------LKM 275 (300)
T ss_dssp HHHHHTCEEEECHHHHHHTTCCCCCCHHHHHHTTCCEEECCCBBTTTBCCCCHHHHHHHHHHH--------------SCC
T ss_pred HHHhcCcceeecchhhhhhhccccccHHHHHHCCCEEEEEeCCCCCCCchhhHHHHHHHHHHH--------------cCC
Confidence 9999999999999998766 455799999999999999999743 33456789998876533 259
Q ss_pred CHHHHHHHHhHHHHHHcCCCCCccc
Q 011766 381 PAETVLRMATINGAKSVLWDNDIGS 405 (478)
Q Consensus 381 s~~~al~~~T~~pA~~lgl~~~~G~ 405 (478)
|++|||+++|.|||++||+++++|+
T Consensus 276 ~~~eal~~aT~~~A~~lG~~~~~G~ 300 (300)
T d2bb0a2 276 TAEEIWHAVTVNAAYAIGKGEEAGQ 300 (300)
T ss_dssp CHHHHHHHTTHHHHHHTTCTTTSSC
T ss_pred CHHHHHHHHHHHHHHHhCcchhhCc
Confidence 9999999999999999999999985
|
| >d2q09a2 c.1.9.17 (A:66-366) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Probab=99.80 E-value=5.7e-19 Score=161.25 Aligned_cols=145 Identities=14% Similarity=0.184 Sum_probs=111.2
Q ss_pred cCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCC
Q 011766 231 NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGV 310 (478)
Q Consensus 231 ~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~ 310 (478)
.................+..+..|......... ....... ....+.|+..+.+++++++++.++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 217 (301)
T d2q09a2 154 GFSLAQTEQVYLAADQYGLAVKGHMDQLSNLGG------------STLAANF----GALSVDHLEYLDPEGIQALAHRGV 217 (301)
T ss_dssp SBCHHHHHHHHHHHHHTTCEEEEEESSSCCCSH------------HHHHHHT----TCSEEEECTTCCHHHHHHHHHHTC
T ss_pred ccchhhHHHHHHHHHHhcccceecccccchhHH------------HHHHHhc----CCceEeeeecCcHHHHHHHHHcCC
Confidence 344555666777888888999888865433211 1111111 234678999999999999999999
Q ss_pred eEEECccchhhc--cCCCcHHHHHHCCCcEEEcCCCCCC-CCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHH
Q 011766 311 KVSHCPASAMRM--LGFAPIKEMLHADICVSLGTDGAPS-NNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLR 387 (478)
Q Consensus 311 ~~~~~p~~~~~~--~~~~~~~~~~~~gv~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~ 387 (478)
.+..||.++... ...++++++.++|+++++|||..+. ....+++.+++.++... |||++|||+
T Consensus 218 ~~~~~~~s~~~l~~~~~~~~~~l~~aGv~v~lGTD~~~~~~~~~~l~~~~~~~~~~~--------------glt~~eal~ 283 (301)
T d2q09a2 218 VATLLPTAFYFLKETKLPPVVALRKAGVPMAVSSDINPGTAPIVSLRMAMNMACTLF--------------GLTPVEAMA 283 (301)
T ss_dssp EEEECHHHHHHTTCCCCCCHHHHHHTTCCEEECCCCBTTTBCCCCHHHHHHHHHHHH--------------CCCHHHHHH
T ss_pred CcccCccHHhhhcccccCcHHHHHHCCCeEEEEeCCCCCCCCcchHHHHHHHHHHHc--------------CCCHHHHHH
Confidence 999999998776 3478999999999999999997443 23467888887765332 599999999
Q ss_pred HHhHHHHHHcCCCCCccc
Q 011766 388 MATINGAKSVLWDNDIGS 405 (478)
Q Consensus 388 ~~T~~pA~~lgl~~~~G~ 405 (478)
++|.|||++||+++++|+
T Consensus 284 ~aT~~~A~~lG~~~~iG~ 301 (301)
T d2q09a2 284 GVTRHAARALGEQEQLGQ 301 (301)
T ss_dssp HTTHHHHHHTTCTTTSSS
T ss_pred HHHHHHHHHhCcccccCc
Confidence 999999999999998884
|
| >d2puza2 c.1.9.17 (A:80-380) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.79 E-value=2.6e-18 Score=157.53 Aligned_cols=146 Identities=17% Similarity=0.234 Sum_probs=114.2
Q ss_pred ccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcC
Q 011766 230 MNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAG 309 (478)
Q Consensus 230 ~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~ 309 (478)
.....+.+..+.+.+.+.|+++..|+.+....... ...... ....+.|+....++++.++.+.+
T Consensus 153 ~~~~~~~~~~~~~~a~~~g~~~~~h~~~~~~~~~~------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 216 (301)
T d2puza2 153 IAFSVKEIDRVFAAAQQRGLPVKLHAEQLSNLGGA------------ELAASY----NALSADHLEYLDETGAKALAKAG 216 (301)
T ss_dssp TSBCHHHHHHHHHHHHHTTCCBEEEESSSSCCSHH------------HHHHHT----TCSEEEECTTCCHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHHHHCCCceeeecccccchhHH------------HHHhhh----ccceeeeeecchHHHHHHHHhcC
Confidence 44577888899999999999999998765443211 111111 22457888999999999999999
Q ss_pred CeEEECccchhhc--cCCCcHHHHHHCCCcEEEcCCCCCC-CCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHH
Q 011766 310 VKVSHCPASAMRM--LGFAPIKEMLHADICVSLGTDGAPS-NNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 386 (478)
Q Consensus 310 ~~~~~~p~~~~~~--~~~~~~~~~~~~gv~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al 386 (478)
..+..+|..+... ...+++++++++|+++++|||+.+. .+..+++.+++.+.... |||+.|||
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~v~lGTD~~~~~~~~~~l~~~~~~~~~~~--------------gl~~~eal 282 (301)
T d2puza2 217 TVAVLLPGAFYALREKQLPPVQALRDAGAEIALATDCNPGTSPLTSLLLTMNMGATLF--------------RMTVEECL 282 (301)
T ss_dssp CEEEECHHHHHHHTCCCCCCHHHHHHHTCCEEECCCCCSSSCCBCCHHHHHHHHHHHH--------------CCCHHHHH
T ss_pred CeeeeccchhhhhcccccchHHHHHHCCCeEEEEeCCCCCCCccchHHHHHHHHHHHc--------------CCCHHHHH
Confidence 9999999887654 5578999999999999999997543 23467888887654322 59999999
Q ss_pred HHHhHHHHHHcCCCCCccc
Q 011766 387 RMATINGAKSVLWDNDIGS 405 (478)
Q Consensus 387 ~~~T~~pA~~lgl~~~~G~ 405 (478)
+++|.|||++||+++++|+
T Consensus 283 ~~aT~~~A~~LGl~~~~GS 301 (301)
T d2puza2 283 TATTRNAAKALGLLAETGT 301 (301)
T ss_dssp HHTTHHHHHHTTCTTTSSS
T ss_pred HHHHHHHHHHhCCCcCcCc
Confidence 9999999999999999996
|
| >d2p9ba2 c.1.9.17 (A:71-394) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Uncharacterized protein BL1453 species: Bifidobacterium longum [TaxId: 216816]
Probab=99.71 E-value=2.7e-17 Score=150.99 Aligned_cols=298 Identities=16% Similarity=0.076 Sum_probs=136.5
Q ss_pred ecccccccccchhhhccccCCCCchHHhhhccccccCCCChHHHHHHHHHHHHHHHhcCcceeecCCccCHHH-HHHHHH
Q 011766 80 PGFVNTHVHTSQQLAKGIADDVDLMTWLHDRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSE-MAKAVE 158 (478)
Q Consensus 80 PGfID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~-~~~~~~ 158 (478)
|||||+|+|+.+..............+. ..........+.+..+......+.+++++||||+.+.++..... ......
T Consensus 1 PGlID~H~H~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~~~~~~~~~~ 79 (324)
T d2p9ba2 1 PGLINAHTHLFSQGKPLNPKLATPKGQR-MVATFAHSPLGKPYMAATVKHNATTLLESGVTTIRTLGDVGYEVVTLRDQI 79 (324)
T ss_dssp ECEEEEEECSCC------------------------------CHHHHHHHHHHHHHHTTEEEEEESCCSSSHHHHHHHHH
T ss_pred CCeeccccCccccCccccchhcccccch-hhhhhhhccCCHHHHHHHHHHHHHHHHhCCceEEeccCCCcchhHHHHHHh
Confidence 9999999999765543322222211111 11111223345556677777888999999999999976544321 222222
Q ss_pred HhC----CeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchhHHHHHHHhcCCCCCCeEEE----------E
Q 011766 159 LLG----LRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSSQKELYAKHHHAADGRIRIW----------F 224 (478)
Q Consensus 159 ~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 224 (478)
... ................... ..... ......................... .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (324)
T d2p9ba2 80 DAGQILGPRILASGPLMAIPEGHGAP-LIALT------------SGTPEEARTAVAQNLKAGVNAIKIAATGGVTDAQEI 146 (324)
T ss_dssp HTTSSCCCEEECCCSCEECCCSSCCC-CEECC------------SCCHHHHHHHHHHHHHTTCSCEEEECSCCTTSCCCC
T ss_pred hhhhccccccccccccccCCcccccc-ccccc------------chhHHHHHHHHHHHHhhccchhhhhccccccccccc
Confidence 222 1111111111000000000 00000 0001122222222111111111100 1
Q ss_pred eccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCC-------CCchHHHHhhhCCCCCCeeeeeeccC
Q 011766 225 GIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKV-------DHGTVTFLDKIEFLQNNLLSAHTVWV 297 (478)
Q Consensus 225 ~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~i~h~~~~ 297 (478)
........+..............+.....|................. .......+...+.........|....
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (324)
T d2p9ba2 147 GEAGSPQMSVEQMRAICDEAHQYGVIVGAHAQSPEGVRRSLLAGVDTIEHGSVLDDELIGMFRHNPNALRGYSALIPTLS 226 (324)
T ss_dssp ------CCCHHHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTCSEEEECCCCCHHHHHHHHCCTTSTTSCCEEECCHH
T ss_pred ccccchhccHHHHHHHHHHHHHcCCccccccccchhhhHHHHhhhhhhhhhhhhhhhHHHHHHHcCccccccceeeeccc
Confidence 11122234555666777778888888888876654433222111000 00011222333333333344444443
Q ss_pred ChhHHHHHHhc--CCeEEECccchhhc-cCCCcHHHHHHCCCcEEEcCCCCCCC-CCcCHHHHHHHHHHHhcccccccCC
Q 011766 298 NHTEIGLLSRA--GVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSN-NRMSIVDEMYLASLINKGREVFANG 373 (478)
Q Consensus 298 ~~~~~~~~~~~--~~~~~~~p~~~~~~-~~~~~~~~~~~~gv~v~~gsD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (478)
.........+. +.....++..+... ....+++.+.++|+++++|||.+... ...+++.+++.+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~v~~GtD~~~~~~~~~~l~~el~~~~~~---------- 296 (324)
T d2p9ba2 227 AGLPLTLLGQDVTGITDIQLENSKNVVGGMVSGARQAHEAGLMIGVGTDTGMTFVPQYATWRELELLVAY---------- 296 (324)
T ss_dssp HHHHHHHSCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCCCTTSTTSCTTCHHHHHHHHHHH----------
T ss_pred ccchHHHhhhcccCcccccchhhhhchhhhHHHHHHHHHcCCeEEEEeCCCCCcChhhHHHHHHHHHHHh----------
Confidence 33333332221 11111122222221 34567889999999999999975432 345677887665432
Q ss_pred CCCCCCCCHHHHHHHHhHHHHHHcCCCCCccc
Q 011766 374 TTDPAALPAETVLRMATINGAKSVLWDNDIGS 405 (478)
Q Consensus 374 ~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~ 405 (478)
.|||+.|||+++|.|||++||+++++|+
T Consensus 297 ----~Gls~~eaL~~aT~n~A~~lgl~d~~GS 324 (324)
T d2p9ba2 297 ----AGFSPAEALHAATAVNASILGVDAETGS 324 (324)
T ss_dssp ----HCCCHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred ----cCCCHHHHHHHHHHHHHHHhCCCcCcCc
Confidence 1599999999999999999999999996
|
| >d2p9ba1 b.92.1.10 (A:9-70,A:395-450) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Uncharacterized protein BL1453 species: Bifidobacterium longum [TaxId: 216816]
Probab=99.69 E-value=1.1e-17 Score=126.94 Aligned_cols=72 Identities=21% Similarity=0.198 Sum_probs=61.2
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEE-CCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccch
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVV-QDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~-~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~ 91 (478)
.+..++|+|++|+|+|++++++++++|+|+ ||||++||+..+... ..+.++||++|++|+|||||+|+|+..
T Consensus 2 ~~~p~ai~na~iit~d~~~~v~~~~~ilI~~dG~I~~vg~~~~~~~---~~~~~viD~~Gk~v~PGlid~H~Hl~~ 74 (118)
T d2p9ba1 2 IVEPFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSI---PAEYHYLDGTGKIVMLEVGKSADLLVL 74 (118)
T ss_dssp CCCCEEEEEEEEECCCTTCCEEEEEEEEECTTSBEEEEEEGGGCCC---CTTCEEEECTTCEEECCTTSBCCEEEE
T ss_pred CCccEEEEeeEEEeCCCCCceeeeEEEEEecCCeEEEEcccccccc---cceeEEEeccCcEEEeeecceeEEEEe
Confidence 355789999999999988888999999996 699999998654321 246799999999999999999999854
|
| >d2qs8a2 c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Probab=99.68 E-value=7e-16 Score=140.93 Aligned_cols=66 Identities=17% Similarity=0.236 Sum_probs=53.8
Q ss_pred cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCC
Q 011766 323 LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDND 402 (478)
Q Consensus 323 ~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~ 402 (478)
....+++.+.++|+++++|||++.. +..+++.+++.+.. .|||+.|||+++|.|||++||++++
T Consensus 245 ~~~~~~~~l~~~Gv~v~lGTD~~~~-~~~~~~~el~~~~~---------------~Gls~~eaL~~aT~~~A~~LGl~d~ 308 (310)
T d2qs8a2 245 QISDTFRKAYEKGVKIAFGTDAGVQ-KHGTNWKEFVYMVE---------------NGMPAMKAIQSATMETAKLLRIEDK 308 (310)
T ss_dssp HHHHHHHHHHHHTCCBCCCCCBTTB-CTTCTTHHHHHHHH---------------TTCCHHHHHHHTTHHHHHHTTCTTT
T ss_pred hhhHHHHHHHHCCCeEEEecCCCCC-CccHHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHHHhCcCCC
Confidence 3456789999999999999998654 34566677765432 2699999999999999999999998
Q ss_pred cc
Q 011766 403 IG 404 (478)
Q Consensus 403 ~G 404 (478)
+|
T Consensus 309 iG 310 (310)
T d2qs8a2 309 LG 310 (310)
T ss_dssp SS
T ss_pred cC
Confidence 87
|
| >d3be7a2 c.1.9.18 (A:57-359) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Zn-dependent arginine carboxypeptidase species: Unidentified organism [TaxId: 32644]
Probab=99.68 E-value=7.8e-17 Score=146.94 Aligned_cols=158 Identities=12% Similarity=0.048 Sum_probs=100.9
Q ss_pred ccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCC--CchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHh
Q 011766 230 MNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVD--HGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSR 307 (478)
Q Consensus 230 ~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~ 307 (478)
.........+..+.++..+.....|.................. ..................+.|.....+.......+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (303)
T d3be7a2 143 KQFTLEEMKAIVDEAHNHGMKVAAHAHGLIGIKAAIKAGVDSVEHASFIDDETIDMAIKNNTVLSMDIFVSDYILGEGAK 222 (303)
T ss_dssp BCSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHTCSEEEECTTCCHHHHHHHHHTTCEEECCCSTHHHHHTTTTT
T ss_pred cchhhHHHHHHHHHHHHhCcchhhhhhhhhhHHHHHHHhhhhhhhhccchhhhhhhcccceeEEEecccchhhhhhhhhh
Confidence 4456677778888899999988888766544333222111000 00000001111111234566777766666666666
Q ss_pred cCCeEEECccchhhc-cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHH
Q 011766 308 AGVKVSHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVL 386 (478)
Q Consensus 308 ~~~~~~~~p~~~~~~-~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al 386 (478)
.+.....++..+... ....+++++.++|+++++|||++.. +..++..+++.... .|||+.|||
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGv~v~lGTD~~~~-~~~~~~~el~~~~~---------------~Gls~~eaL 286 (303)
T d3be7a2 223 AGIREESLNKERLVGKKQRENFMNAHRRGAIITFGTDAGIF-DHGDNAKQFAYMVE---------------WGMTPLEAI 286 (303)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHTCCEECCCCBTTB-CTTCGGGHHHHHHH---------------TTCCHHHHH
T ss_pred ccCcHHHHhHHHHHhhhhHHHHHHHHHCCCeEEEEeCCCCc-ccHHHHHHHHHHHH---------------cCCCHHHHH
Confidence 666666666655444 5678999999999999999998644 34455566655431 269999999
Q ss_pred HHHhHHHHHHcCCCCCcc
Q 011766 387 RMATINGAKSVLWDNDIG 404 (478)
Q Consensus 387 ~~~T~~pA~~lgl~~~~G 404 (478)
+++|.|||++||++| +|
T Consensus 287 ~~aT~n~A~~lGl~D-~G 303 (303)
T d3be7a2 287 QASTIKTATLFGIEN-IG 303 (303)
T ss_dssp HTTTHHHHHHHTCSS-CS
T ss_pred HHHHHHHHHHhCCcc-cC
Confidence 999999999999964 56
|
| >d1yrra1 b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6-phosphate deacetylase, NagA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=3.3e-16 Score=112.05 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=53.6
Q ss_pred eEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccch
Q 011766 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (478)
Q Consensus 21 ~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~ 91 (478)
+.|+|++|+|++ ..++++.|+|++|+|.+|++..+.+ .++++||++|++|+|||||.|+|...
T Consensus 2 ~al~n~rI~dg~---~~~~~~~i~i~~g~I~~Ig~~~~~p-----~~~~viDl~G~~l~PGlid~hvH~~~ 64 (85)
T d1yrra1 2 YALTQGRIFTGH---EFLDDHAVVIADGLIKSVCPVAELP-----PEIEQRSLNGAILSPTLAAGKVANLT 64 (85)
T ss_dssp EEEESSEEECSS---CEESSEEEEEETTEEEEEEEGGGSC-----TTCCEEECTTCEEEESCCTTSBCCEE
T ss_pred eEEEeeEEECCC---CcEeccEEEEeccEEEEEccccccc-----ceeEEEecCCcEEEcccEecceeecc
Confidence 468999999653 5678899999999999999866532 46789999999999999999999854
|
| >d2r8ca2 c.1.9.18 (A:58-368) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Uncharacterized protein EAJ56179 species: Unidentified organism [TaxId: 32644]
Probab=99.60 E-value=1.4e-15 Score=139.19 Aligned_cols=139 Identities=18% Similarity=0.134 Sum_probs=85.5
Q ss_pred ccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcC
Q 011766 230 MNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAG 309 (478)
Q Consensus 230 ~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~ 309 (478)
.....+..........+.+.....|............... ....+...............+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~ 211 (311)
T d2r8ca2 151 FGYSEDEIRAIVAEAQGRGTYVLAHAYTPAAIARAVRCGV-------------------RTIEHGNLIDDETARLVAEHG 211 (311)
T ss_dssp BCSCHHHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHTTC-------------------SEEEECTTCCHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHHHHhccccccccchhHHHHHHHHhhh-------------------cccccccchhhHHHHHhhhhc
Confidence 4456677777788888888888888765444332221111 112222222333333333333
Q ss_pred CeE---------------------EECccchhhc-cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhccc
Q 011766 310 VKV---------------------SHCPASAMRM-LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGR 367 (478)
Q Consensus 310 ~~~---------------------~~~p~~~~~~-~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~ 367 (478)
... ..++...... ....+++.|.++||+|++|||++.. +....+.+|+...
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGv~v~~GTD~~~~-~~~~~~~el~~~~------ 284 (311)
T d2r8ca2 212 AYVVPTLVTYDALASEGEKYGLPPESIAKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGE-AQRLQSDEFRILA------ 284 (311)
T ss_dssp CEEECCTHHHHHHHHHTTTTTCCHHHHTTSTTTGGGHHHHHHHHHHTTCEECCCCCCCGG-GGGGTTHHHHHHT------
T ss_pred ccccccchhhhhhHhhhhhcCCchhhhhhHHHHHHhhhHHHHHHHHCCCeEEEEeCCCCC-chHHHHHHHHHHH------
Confidence 222 2222222222 3456889999999999999998543 2334455554321
Q ss_pred ccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCcc
Q 011766 368 EVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIG 404 (478)
Q Consensus 368 ~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G 404 (478)
.|||+.|||+++|.|||++||+++++|
T Consensus 285 ----------~gls~~eaL~~ATi~~A~aLg~~d~iG 311 (311)
T d2r8ca2 285 ----------EVLSPAEVIASATIVSAEVLGMQDKLG 311 (311)
T ss_dssp ----------TTSCHHHHHHHTTHHHHHHTTCTTTSS
T ss_pred ----------cCCCHHHHHHHHHHHHHHHHCCCcCCC
Confidence 269999999999999999999999887
|
| >d1p1ma1 b.92.1.4 (A:1-49,A:331-404) Hypothetical protein TM0936 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein TM0936 species: Thermotoga maritima [TaxId: 2336]
Probab=99.58 E-value=3.4e-17 Score=124.57 Aligned_cols=94 Identities=19% Similarity=0.176 Sum_probs=85.3
Q ss_pred CCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCee
Q 011766 380 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKI 459 (478)
Q Consensus 380 ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~ 459 (478)
.+.++++.++|..+|..+|.. .+|+|++|+.|||+++|.+.+...|..||++.+++.. ..+|..|||+|++|+++|++
T Consensus 26 ~t~~~~~~~~t~~~a~~~G~~-~~GrIe~G~~ADivviDl~~p~~~p~~dp~~~lV~~~-~~~V~~V~V~Gk~Vv~dG~~ 103 (123)
T d1p1ma1 26 GTIKRVLQGEVKVDLDLSGKL-VMPKIEEGWNADLVVIDLDLPEMFPVQNIKNHLVHAF-SGEVFATMVAGKWIYFDGEY 103 (123)
T ss_dssp TEEEEEEESSCCCSEECTTEE-EEESCCTTSBCCEEEEECCSGGGCSGGGHHHHHHHTC-CSCCSEEEETTEEEEETTBC
T ss_pred ccHHHHHhhhhccChhhcCCc-cccccCCCCCcCEEEEeCCCCcccchhhhHHHHHhcc-CCCccEEEECCEEEEECCeE
Confidence 467889999999999999984 5899999999999999999888889999999999865 46799999999999999999
Q ss_pred ecccHHHHHHHHHHHh
Q 011766 460 LLLMRGRLFQLQDKLL 475 (478)
Q Consensus 460 ~~~~~~~~~~~~~~~~ 475 (478)
++.+.++++++.+++.
T Consensus 104 ~~iD~~ei~~~~~~~a 119 (123)
T d1p1ma1 104 PTIDSEEVKRELARIE 119 (123)
T ss_dssp TTSCHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHH
Confidence 9999999999888764
|
| >d2paja1 b.92.1.4 (A:10-69,A:406-484) Hypothetical protein GOS_1943094 {Environmental samples} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein GOS 1943094 species: Environmental samples
Probab=99.57 E-value=4.9e-16 Score=122.05 Aligned_cols=127 Identities=14% Similarity=0.102 Sum_probs=100.8
Q ss_pred HHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCc
Q 011766 331 MLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGK 410 (478)
Q Consensus 331 ~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~ 410 (478)
|++++..++.|+|+......-.. +.... ...-+.++.+.++|.++|+.+++++.+|+|++||
T Consensus 4 li~n~~av~~g~~G~a~~~~rv~------------a~d~r------~~~~~~~~i~~~at~~Ga~~l~~~~~ig~l~~G~ 65 (139)
T d2paja1 4 LIRNAAAIMTGGRGTADDPSRVP------------GPDIR------IVGDTIDAIGALAPRPGETIVDATDCVIYVAVGY 65 (139)
T ss_dssp EEECBSEEBCCCCSSSSSCSBCC------------CCCEE------EETTEEEEESSCCCCTTCEEEECBTCEEECSTTS
T ss_pred HHhchhhhhhCCCCCCCCccccc------------chhhH------hhcccHHHHHhhhhhccchhcCCCCccceeccCC
Confidence 46678899999998654210000 00000 0012344555678999999999999899999999
Q ss_pred cccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHHHHHHHh
Q 011766 411 KADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQLQDKLL 475 (478)
Q Consensus 411 ~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~~~~~~~ 475 (478)
.|||+++|.+.+.+.|..||...+++......|..||++|+++++||++++.+.+++.++.+++.
T Consensus 66 ~ADli~~d~~~p~~~p~~dp~~~lV~~~~~~~V~~v~V~G~~vv~dg~l~~iD~~~i~~~a~~~~ 130 (139)
T d2paja1 66 AADIAVYRLDDPRYFGLHDPAIGPVASGGRPSVMALFSAGKRVVVDDLIEGVDIKELGGEARRVV 130 (139)
T ss_dssp BCCEEEEECCSGGGTTCSSGGGHHHHSCSCCEEEEEEETTEEEEETTBCTTCCHHHHHHHHHHHH
T ss_pred cccEEEEcCCCcccCCCCCHHHHHHHhhCcCcceeEEEcCEEEEECCEeccCCHHHHHHHHHHHH
Confidence 99999999998888899999999999999999999999999999999999999999998877653
|
| >d1onwa1 b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Isoaspartyl dipeptidase domain: Isoaspartyl dipeptidase species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=2.1e-15 Score=112.52 Aligned_cols=66 Identities=18% Similarity=0.157 Sum_probs=52.8
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccc
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTS 90 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~ 90 (478)
+..++|+|++||+++ .....+|+|+||||++|++..+... .++.++||++|++|+|||||+|.|..
T Consensus 7 ~~~llikna~i~~~~----~~~~~dI~I~~g~I~~I~~~~~~~~---~~~~~vID~~G~~v~PG~ID~H~h~~ 72 (105)
T d1onwa1 7 AGFTLLQGAHLYAPE----DRGICDVLVANGKIIAVASNIPSDI---VPNCTVVDLSGQILCPEILPGNDADL 72 (105)
T ss_dssp GCCEEEESCEEESSS----EEEECEEEEETTEEEEEETTCCTTS---SSSCEEEECTTCEEEESCCTTSBCCE
T ss_pred CCCEEEECcEEEcCC----CCeeeeEEEECCEEEEeccCccccc---CCCCeEEcCCCCEEeCCEeecccCcc
Confidence 446899999999753 2346799999999999998654321 23568999999999999999998863
|
| >d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId: 275]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Probab=99.56 E-value=1.8e-14 Score=133.42 Aligned_cols=194 Identities=13% Similarity=0.130 Sum_probs=111.6
Q ss_pred HHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhH--HHhhhcC--------CCCchH---
Q 011766 210 AKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQ--VVMDTRK--------VDHGTV--- 276 (478)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~--~~~~~~~--------~~~~~~--- 276 (478)
......+...++........+..++..+.++++.++..|..+.+|+.+...... ......+ ......
T Consensus 85 ~~l~~~G~~~~k~~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~h~ed~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~E~ 164 (335)
T d1gkpa2 85 REIVADGISSFKIFLSYKNFFGVDDGEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEA 164 (335)
T ss_dssp HHHHHTTCCEEEEEECSTTTTBCCHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHTTCCSGGGTTTTSCHHHHH
T ss_pred HHHHhhhccccccccccCCCccCCHHHHHHHHHHhhhcCCEEEEcCCcHHHHHHHHhhhhcccccCccccccchhhhhHH
Confidence 333334555566666666666778899999999999999999999975432211 0000000 000000
Q ss_pred ----HHHhhhCCCCCCeeeeeeccCC-hhHHHHHHhcCCe--EEECccchhhc--------------cCCCcH-------
Q 011766 277 ----TFLDKIEFLQNNLLSAHTVWVN-HTEIGLLSRAGVK--VSHCPASAMRM--------------LGFAPI------- 328 (478)
Q Consensus 277 ----~~l~~~~~~~~~~~i~h~~~~~-~~~~~~~~~~~~~--~~~~p~~~~~~--------------~~~~~~------- 328 (478)
..+......+.+..+.|.+... -+.+..+++.|.. +.+||...... .-.+|+
T Consensus 165 ~av~r~~~la~~~~~~~hi~HiSt~~~l~~i~~ak~~g~~it~e~~~~hl~l~~~~~~~~~~~~~~~k~~PPlRs~~d~~ 244 (335)
T d1gkpa2 165 EGTARFATFLETTGATGYVVHLSCKPALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGVEAMKYIMSPPLRDKRNQK 244 (335)
T ss_dssp HHHHHHHHHHHHHTCEEEECSCCSHHHHHHHHHHHHTTCCEEEEEEHHHHHCCGGGGGSCHHHHHTTCCSSCCCCTHHHH
T ss_pred HHHHHHHHHHHHhCcccchhhhhhhhhhhhhhhhhhcCceEEeecccchhhcCHHHHhcCCchhcceecccCCCCHHHHH
Confidence 1111122233445555555421 2345566666654 44666543210 112333
Q ss_pred --HHHHHCCCcEEEcCCCCCCCCC------cCHHH--------HHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHH
Q 011766 329 --KEMLHADICVSLGTDGAPSNNR------MSIVD--------EMYLASLINKGREVFANGTTDPAALPAETVLRMATIN 392 (478)
Q Consensus 329 --~~~~~~gv~v~~gsD~~~~~~~------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~ 392 (478)
.+.+..|...+++|||.|+... .+++. +..+..+...+ ..++.+|++++++++|.|
T Consensus 245 ~L~~al~~G~id~i~SDHaP~~~e~K~~~~~~~~~~~~G~~gle~~lplll~~~--------V~~g~lsl~~~v~~~S~n 316 (335)
T d1gkpa2 245 VLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYG--------VSRGRLDIHRFVDAASTK 316 (335)
T ss_dssp HHHHHHHTTSSCEEECCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHH--------TTSSSCCHHHHHHHHTHH
T ss_pred HHHHHHhcCCccEEEecCCCCCHHHhccCCCChhhCCCChhHHHHHHHHHHHHH--------HHcCCCCHHHHHHHHHHH
Confidence 3677889999999999876310 00110 00111111100 123459999999999999
Q ss_pred HHHHcCCCCCccccccCcc
Q 011766 393 GAKSVLWDNDIGSLEAGKK 411 (478)
Q Consensus 393 pA~~lgl~~~~G~l~~G~~ 411 (478)
||+++||.+++|+|++|++
T Consensus 317 PAri~Gl~~~KG~i~~G~D 335 (335)
T d1gkpa2 317 AAKLFGLFPRKGTIAVGSD 335 (335)
T ss_dssp HHHHTTCTTTSSSCCTTSB
T ss_pred HHHHhCCCCCCCeecCCCC
Confidence 9999999889999999985
|
| >d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.50 E-value=1.2e-13 Score=127.39 Aligned_cols=181 Identities=12% Similarity=0.123 Sum_probs=101.6
Q ss_pred CCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhh--hcCCCC---------ch-----H-HH
Q 011766 216 ADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD--TRKVDH---------GT-----V-TF 278 (478)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~--~~~~~~---------~~-----~-~~ 278 (478)
+...++++......+..+.+.+.++++.+++.+..+.+|+.+.......... ..+... .. + ..
T Consensus 94 g~~~~ki~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~ai~r~ 173 (334)
T d1kcxa2 94 GVNSFQVYMAYKDLYQMSDSQLYEAFTFLKGLGAVILVHAENGDLIAQEQKRILEMGITGPEGHALSRPEELEAEAVFRA 173 (334)
T ss_dssp CCCEEEEESCSTTTTCCCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHTTCCSTHHHHHHSCTHHHHHHHHHH
T ss_pred cCceeeeeeccCCCcccCHHHHHHHHHHHhccCceeEEecCCHHHHhccccchhhcCCcchhhccCCCCHHHHHHHHHHH
Confidence 3445555555555556778889999999999999999999764322111100 001100 00 1 12
Q ss_pred HhhhCCCCCCeeeeeeccCC-hhHHHHHHhcCCeE--EECccchhh---------------ccCCC----------cHHH
Q 011766 279 LDKIEFLQNNLLSAHTVWVN-HTEIGLLSRAGVKV--SHCPASAMR---------------MLGFA----------PIKE 330 (478)
Q Consensus 279 l~~~~~~~~~~~i~h~~~~~-~~~~~~~~~~~~~~--~~~p~~~~~---------------~~~~~----------~~~~ 330 (478)
+......+.+..+.|.+.-. -+.++++++.|..+ .+||..... ....+ .+.+
T Consensus 174 ~~la~~~g~~~hi~HiSt~~~ve~i~~ak~~g~~vt~e~~~~~l~l~~~~~~~~~~~~~~~~~~~pPlr~~~~d~eaL~~ 253 (334)
T d1kcxa2 174 IAIAGRINCPVYITKVMSKSAADIIALARKKGPLVFGEPIAASLGTDGTHYWSKNWAKAAAFVTSPPLSPDPTTPDYLTS 253 (334)
T ss_dssp HHHHHHHTCCEEEEEECCHHHHHHHHHHHHHSCCEEEEEBHHHHHCCGGGGGCSSHHHHHHTCCSSCCCSCTTHHHHHHH
T ss_pred HHHHhhcCCceeeccccchHHHHHHHHHhccccceeeccchhheeecccccccCChhHhcceEeeeccCchhhhHHHHHH
Confidence 22223335667777766421 23455666666654 455542110 00011 2334
Q ss_pred HHHCCCcEEEcCCCCCCCC---------------CcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHH
Q 011766 331 MLHADICVSLGTDGAPSNN---------------RMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAK 395 (478)
Q Consensus 331 ~~~~gv~v~~gsD~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~ 395 (478)
.+..|...+++|||.|+.. .+...+.+ ...+.... ..++.+|++++++++|.|||+
T Consensus 254 ~l~~G~Id~I~SDHaP~~~e~K~~~~~~f~~ap~Gi~g~e~~-l~~llt~~--------V~~g~isl~~~v~~~s~nPA~ 324 (334)
T d1kcxa2 254 LLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEER-MTVVWDKA--------VATGKMDENQFVAVTSTNAAK 324 (334)
T ss_dssp HHHHTSSCCCBCCBCCCCHHHHGGGSSCGGGSCCCBCCTTTH-HHHHHHHH--------TTTTSSCHHHHHHHHTHHHHH
T ss_pred HhhcCCcceEecCCCCCCHHHhccCCCChhhCCCCcccHHHH-HHHHHHHH--------HHcCCCCHHHHHHHHHHHHHH
Confidence 5678999999999987631 00111111 11111100 123459999999999999999
Q ss_pred HcCCCCCccc
Q 011766 396 SVLWDNDIGS 405 (478)
Q Consensus 396 ~lgl~~~~G~ 405 (478)
+|||.+++|+
T Consensus 325 i~gL~p~KGr 334 (334)
T d1kcxa2 325 IFNLYPRKGR 334 (334)
T ss_dssp HHTCTTTSSC
T ss_pred HhCCCCCCCC
Confidence 9999888885
|
| >d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Probab=99.49 E-value=2.5e-14 Score=110.44 Aligned_cols=61 Identities=23% Similarity=0.351 Sum_probs=52.5
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccc
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTS 90 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~ 90 (478)
+|++|+||+|+|++ . ..+++|+|+||||++|++... .++++|||+|++|+||+||.|+|+.
T Consensus 1 mDllikn~~v~~~~---~-~~~~di~I~dg~I~~ig~~~~-------~~~~~iDa~G~~v~Pg~i~~~~~~~ 61 (127)
T d1nfga1 1 MDIIIKNGTIVTAD---G-ISRADLGIKDGKITQIGGALG-------PAERTIDAAGRYVFPIAVGSDADIV 61 (127)
T ss_dssp CCEEEEEEEEEETT---E-EEEEEEEEETTEEEEESSCCC-------CCSEEEECTTCEEEECSTTSBCCEE
T ss_pred CcEEEECCEEECCC---C-CEEEEEEEECCEEEEeeCCCC-------CceEEEEeeceEEeeecccccccce
Confidence 58999999999853 2 356899999999999998642 3679999999999999999999984
|
| >d1ejxc1 b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit of urease {Klebsiella aerogenes [TaxId: 28451]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Klebsiella aerogenes [TaxId: 28451]
Probab=99.49 E-value=2.1e-14 Score=113.85 Aligned_cols=72 Identities=21% Similarity=0.210 Sum_probs=56.1
Q ss_pred CccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhh-----hhccCCCeEEeCCCCEEeecccccccccc
Q 011766 16 GSSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQ-----QFSQMADQIIDLQSQILLPGFVNTHVHTS 90 (478)
Q Consensus 16 ~~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~-----~~~~~~~~viD~~G~~v~PGfID~H~H~~ 90 (478)
....|++|+|+.|++.. . +.++||.|+||||++||+...... .....+.++||++|++|+||+||+|+|+.
T Consensus 62 ~~~lDlvI~n~~Ivd~~---G-i~kaDIgIkdGrI~~IGkagnpd~~d~v~l~~g~~tevIdaeG~ivtpG~ID~HvHf~ 137 (181)
T d1ejxc1 62 ADCVDLVLTNALIVDHW---G-IVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGSIEVGKLAD 137 (181)
T ss_dssp GGSCSEEEEEEEEEETT---E-EEEEEEEEETTEEEEEECEECTTTCSSCCEECCTTCEEEECTTCEEEECSSCTTSBCC
T ss_pred cccccEEEEccEEcCCC---C-cEEEEEEEeCCEEEEEecCCCccccCCceeeeccceEEecCCCcEEeeeeeecceEEe
Confidence 34679999999999753 3 467899999999999997532110 01234679999999999999999999995
Q ss_pred h
Q 011766 91 Q 91 (478)
Q Consensus 91 ~ 91 (478)
.
T Consensus 138 ~ 138 (181)
T d1ejxc1 138 L 138 (181)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d2r8ca1 b.92.1.9 (A:2-57,A:369-414) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Uncharacterized protein EAJ56179 species: Unidentified organism [TaxId: 32644]
Probab=99.48 E-value=2e-14 Score=107.33 Aligned_cols=63 Identities=13% Similarity=0.307 Sum_probs=51.8
Q ss_pred eeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccc
Q 011766 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVH 88 (478)
Q Consensus 20 ~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H 88 (478)
+++|+|++|+++.+ ....++.+|+|++|+|++|++.... ..++++||++|++|+|||||.|.|
T Consensus 2 ~~l~~n~~v~d~~~-~~~~~~~~I~I~~g~I~~i~~~~~~-----~~~~~vID~~G~~v~PGlid~h~~ 64 (102)
T d2r8ca1 2 TFLFRNGALLDPDH-PDLLQGFEILIEDGFIREVSDKPIK-----SSNAHVIDVKGKTIMPRIVPGAHA 64 (102)
T ss_dssp EEEEEEEEECCTTS-SSCEEEEEEEEESSBEEEEESSCCC-----CSSCEEEECTTCEEEESCCTTSBC
T ss_pred eEEEECeEEECCCC-CCcccCcEEEEECCEEEEccccCCC-----CCCCEEEeCCCCEEECceeeheee
Confidence 58999999997543 3556778999999999999975432 246799999999999999998874
|
| >d2bb0a1 b.92.1.10 (A:3-73,A:374-415) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Bacillus subtilis [TaxId: 1423]
Probab=99.45 E-value=2.1e-17 Score=126.28 Aligned_cols=105 Identities=17% Similarity=0.222 Sum_probs=76.9
Q ss_pred HCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccc
Q 011766 333 HADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKA 412 (478)
Q Consensus 333 ~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~A 412 (478)
+.|..++++||++..++.+..+..+. .+.. ++.....++..++++++|.+||+.+++++++|+|++|+.|
T Consensus 9 n~G~~ltl~sdgp~~g~~m~~l~~i~------~a~~----~~~~~~il~~~~al~~aT~~~A~~l~~~~~~g~l~~g~~a 78 (113)
T d2bb0a1 9 NIGQLLTMESSGPRAGKSMQDLHVIE------DAVV----GIHEQKIVFAGQKGAEAGYEADEIIDCSGRLVTLKAGRSA 78 (113)
T ss_dssp EEEEECCCCCSSCCCGGGGTCCCCEE------EEEE----EEETTEEEEEEETTTTTTCEEEEEEECTTCEEECSTTSBC
T ss_pred hcCCeEecCCCCccccchhhhHHHhh------hhhh----hhccccccCHHHHHHHHHHHHHHHhCCcCcEEEEcCCCcc
Confidence 45777888999876643333322221 1111 1112334888999999999999999999999999999999
Q ss_pred cEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEEC
Q 011766 413 DMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKN 456 (478)
Q Consensus 413 Dlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~ 456 (478)
||+|||.+++ ..+.+......+..||++|++||+.
T Consensus 79 d~~~~~~~~~---------~~~~y~~~~~~v~~vi~~G~iv~~r 113 (113)
T d2bb0a1 79 DLVIWQAPNY---------MYIPYHYGVNHVHQVMKNGTIVVNR 113 (113)
T ss_dssp CEEEESSSST---------THHHHSCSSCCEEEEEETTEEEEEC
T ss_pred cEEEecCCch---------hhchhhcCCCChhEEEECCEEEEeC
Confidence 9999999743 3344555667899999999999974
|
| >d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Probab=99.45 E-value=3.2e-13 Score=124.63 Aligned_cols=184 Identities=16% Similarity=0.202 Sum_probs=103.9
Q ss_pred CCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhh--hcCCCC-------c--h-----H-
Q 011766 214 HAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD--TRKVDH-------G--T-----V- 276 (478)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~--~~~~~~-------~--~-----~- 276 (478)
..+...++++.........+.+.+.++++.++..+..+.+|+.+.......... ..+... + . +
T Consensus 91 ~~g~~~~k~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~h~Ed~~~~~~~~~~~~~~g~~~~~~~~~~~p~~aE~~ai~ 170 (332)
T d1ynya2 91 SEGITSLKVFMAYKNVFQADDETLFKTLVKAKELGALVQVHAENGDVLDYLTKKALAEGNTDPIYHAYTRPPEAEGEATG 170 (332)
T ss_dssp TSCCCEEEEESCSTTTTCCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTTHHHHTSCHHHHHHHHH
T ss_pred hhcccceeeeeccccccccCHHHHHHHHHHHhhcCCEEeechhhHHHHHHHHHHHHhcCCCCchhccccchhhHHHHHHH
Confidence 344455665554444445678889999999999999999999764321111100 111000 0 0 0
Q ss_pred HHHhhhCCCCCCeeeeeeccCC-hhHHHHHHhcC--CeEEECccchhh--------------ccCCCc---------HHH
Q 011766 277 TFLDKIEFLQNNLLSAHTVWVN-HTEIGLLSRAG--VKVSHCPASAMR--------------MLGFAP---------IKE 330 (478)
Q Consensus 277 ~~l~~~~~~~~~~~i~h~~~~~-~~~~~~~~~~~--~~~~~~p~~~~~--------------~~~~~~---------~~~ 330 (478)
..+......+.+..+.|.+.-. -+.++.+++.| +.+.+||.+... ..-.+| +.+
T Consensus 171 r~~~la~~~g~~~hi~hiSt~~~~~~i~~ak~~g~~vt~e~~ph~L~l~~~~~~~~~~~g~~~k~~PPLRs~~dr~aL~~ 250 (332)
T d1ynya2 171 RAIALTALAGSQLYVVHVSCASAVQRIAEAREKGWNVYGETCPQYLALDVSIMDQPDFEGAKYVWSPPLREKWNQEVLWS 250 (332)
T ss_dssp HHHHHHHHHTCCEEECSCCSHHHHHHHHHHHHTTCCEEEEECHHHHHCCGGGGCCSSSGGGGGCCSSCCCCTTHHHHHHH
T ss_pred HHHHhhhhhcccccccccccchHHHHHHHHHHhCCCceeccccccccCCHHHHhhhhccCceeEecCccccHHHHHHHHH
Confidence 1112122223455555544321 23455556665 556788875321 111233 346
Q ss_pred HHHCCCcEEEcCCCCCCCCC-------cCHHH--------HHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHH
Q 011766 331 MLHADICVSLGTDGAPSNNR-------MSIVD--------EMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAK 395 (478)
Q Consensus 331 ~~~~gv~v~~gsD~~~~~~~-------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~ 395 (478)
.+..|...+++|||.|+... .+++. +..+..+...+ ..++.+|++++++++|.|||+
T Consensus 251 al~~G~id~i~SDHaP~~~~~kk~~~~~~f~~a~~G~~g~e~~l~~~~~~~--------v~~g~lsl~~~v~~~s~nPAk 322 (332)
T d1ynya2 251 ALKNGILQTVGSDHCPFNFRGQKELGRGDFTKIPNGGPLIEDRLTILYSEG--------VRQGRISLNQFVDISSTKAAK 322 (332)
T ss_dssp HHHTTSSCEECCCBCCCCTTTTGGGGTTCGGGSCCCBCCTTTHHHHHHHHT--------TTTTSSCHHHHHHHHTHHHHH
T ss_pred HHhcCCeeEEEecCCCCCHHHHhhccCCCcccCCCccchHHHHHHHHHHHH--------HHcCCCCHHHHHHHHhHHHHH
Confidence 67889999999999886311 01111 01112222110 123469999999999999999
Q ss_pred HcCCCCCccc
Q 011766 396 SVLWDNDIGS 405 (478)
Q Consensus 396 ~lgl~~~~G~ 405 (478)
+|||.+++|+
T Consensus 323 i~GL~p~KGt 332 (332)
T d1ynya2 323 LFGMFPRKGT 332 (332)
T ss_dssp HTTCTTTSSS
T ss_pred HhCCCCCCCC
Confidence 9999988996
|
| >d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Probab=99.45 E-value=5.6e-14 Score=108.91 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=50.6
Q ss_pred eeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccch
Q 011766 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (478)
Q Consensus 20 ~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~ 91 (478)
.++||||+|+++++ ...++|+|+||+|++|++..+. .++++|||+|++|+||+||.|+|+..
T Consensus 1 k~likn~~i~~~~~----~~~~di~I~~g~I~~ig~~~~~------~~~~viDa~g~~v~Pg~i~~~~~~~i 62 (127)
T d1ynya1 1 KKWIRGGTVVTAAD----TYQADVLIEGERVVAIGHQLSV------NGAEEIDATGCYVIPIAVGSDADIVI 62 (127)
T ss_dssp CEEEESCEEECSSC----EEECEEEEETTEEEEEECC----------CCEEEECTTSEEEECSTTSBCCEEE
T ss_pred CEEEECcEEECCCC----CEEEeEEEECCEEEEecCCCCC------CCCEEEEhhhceeecccccccchhhh
Confidence 36899999997642 3568999999999999986542 35699999999999999999999853
|
| >d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=99.44 E-value=4.2e-14 Score=115.00 Aligned_cols=66 Identities=20% Similarity=0.370 Sum_probs=55.3
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEE---eecccccccccch
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQIL---LPGFVNTHVHTSQ 91 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v---~PGfID~H~H~~~ 91 (478)
||+|++|+|++|+|+++ ...++|+|+||||++|++.... ..++++|||+|++| +|||||+|+|+..
T Consensus 1 pm~dllikn~~v~~~~~----~~~~di~i~~g~I~~ig~~~~~-----~~~~~viDa~G~~V~p~~pg~~d~Hih~~~ 69 (156)
T d2fvka1 1 PIYDLIIKNGIICTASD----IYAAEIAVNNGKVQLIAASIDP-----SLGSEVIDAEGAFITPILPGVSDADLVIWY 69 (156)
T ss_dssp CCEEEEEESCEEECSSC----EEECEEEEETTEEEEEESCCCG-----GGEEEEEECTTCEEEECCTTTSBCCEEEEC
T ss_pred CCccEEEECCEEECCCC----CEEEEEEEECCEEEEecCCCCC-----CCCCEEEECCCCEEeeecccccccceEEEe
Confidence 58899999999998642 3567999999999999986542 23568999999998 6999999999864
|
| >d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.42 E-value=5.2e-13 Score=123.04 Aligned_cols=179 Identities=12% Similarity=0.068 Sum_probs=96.5
Q ss_pred CeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHh--hhcCCCC---------ch------HHHHhh
Q 011766 219 RIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVM--DTRKVDH---------GT------VTFLDK 281 (478)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~--~~~~~~~---------~~------~~~l~~ 281 (478)
.++.+.........+.+.+.++++.+++.+..+.+|+........... ...+... .. ...+.-
T Consensus 97 ~~k~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~~v~r~~~l 176 (334)
T d2ftwa2 97 SFKCFMAYKNSFMVTDQEMYHIFKRCKELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVI 176 (334)
T ss_dssp EEEEESSCTTTTBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTHHHHHHSCTHHHHHHHHHHHHH
T ss_pred ccceeeccccccccccHHHHHHHHHHhhcCCceeecchhHHHHhhcchhhhccCCCCcccccccCcHHHHHHHHHHHHHH
Confidence 344443333333457778889999999999999999976443322111 0111100 00 011222
Q ss_pred hCCCCCCeeeeeeccCC-hhHHHHHHhcCCeE--EECccchhh---------------ccCCCc----------HHHHHH
Q 011766 282 IEFLQNNLLSAHTVWVN-HTEIGLLSRAGVKV--SHCPASAMR---------------MLGFAP----------IKEMLH 333 (478)
Q Consensus 282 ~~~~~~~~~i~h~~~~~-~~~~~~~~~~~~~~--~~~p~~~~~---------------~~~~~~----------~~~~~~ 333 (478)
....+.+..+.|.+.-. -+.++.+++.|..+ .+||.+... ..-.+| +.+.+.
T Consensus 177 a~~~~~~lhi~HiSt~~~~~~i~~ak~~G~~vt~e~~ph~L~l~~~~~~~~d~~~~~~~~~~PPlR~~~~d~~~L~~~l~ 256 (334)
T d2ftwa2 177 ADSVCTPVYIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRPDPRTKGVLMDYLA 256 (334)
T ss_dssp HHHHTCCEEECSCCCHHHHHHHHHHHHTTCCEEECCBHHHHHCCGGGGGCSSHHHHHTTCCSSCCCCCTTHHHHHHHHHH
T ss_pred HHhhccceeeccccchhhhhhHHHhcccCCceeeccccceeeccHHHHhccchhhccceEeeccccccHhhhhhHHHHhh
Confidence 22234556666655321 13345556666654 455553210 001112 234567
Q ss_pred CCCcEEEcCCCCCCCCC------cCHHH--------HHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCC
Q 011766 334 ADICVSLGTDGAPSNNR------MSIVD--------EMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLW 399 (478)
Q Consensus 334 ~gv~v~~gsD~~~~~~~------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl 399 (478)
.|...+++|||.|+... .+++. +..+..+...+ ..++.+|++++++++|.|||++|||
T Consensus 257 ~G~Id~iaSDHaPh~~e~K~~~~~~f~~a~~Gi~glet~lpll~~~~--------v~~g~lsl~~~v~~~s~nPAki~gL 328 (334)
T d2ftwa2 257 RGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENG--------VNTGKLTWCQFVRATSSERARIFNI 328 (334)
T ss_dssp HTSSCCCBCCBCCCCHHHHGGGTTCGGGSCCCBCCTTTHHHHHHHHH--------TTTTSSCHHHHHHHHTHHHHHHTTC
T ss_pred CCCccceecCCCCCCHHHHhcCCCChhhCCCCccCHHHHHHHHHHHH--------HHcCCCCHHHHHHHHhHHHHHHhCC
Confidence 88899999999876310 01110 01111111110 1234599999999999999999999
Q ss_pred CCCccc
Q 011766 400 DNDIGS 405 (478)
Q Consensus 400 ~~~~G~ 405 (478)
.+++|+
T Consensus 329 ~p~KGr 334 (334)
T d2ftwa2 329 YPRKGR 334 (334)
T ss_dssp TTTSSC
T ss_pred CCCCCC
Confidence 888885
|
| >d2qs8a1 b.92.1.9 (A:7-63,A:374-412) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Probab=99.42 E-value=7.3e-14 Score=102.22 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=54.0
Q ss_pred eeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeeccccccccc
Q 011766 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHT 89 (478)
Q Consensus 20 ~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~ 89 (478)
+++|+||+|+++.+ .....+.+|+|++|+|++|++.... +...+++||++|++|+|||+|.|+|-
T Consensus 2 ktlI~~g~liDg~~-~~~~~~~~I~I~~~~I~~V~~~~~~----~~~~~~vID~~G~~v~PGL~~g~~~d 66 (96)
T d2qs8a1 2 KTLIHAGKLIDGKS-DQVQSRISIVIDGNIISDIKKGFIS----SNDFEDYIDLRDHTVLPSIESGKLAD 66 (96)
T ss_dssp CEEEEEEEECCSSC-SSCEEEEEEEEETTEEEEEEESCCC----CTTSSEEEEEEEEEEEESCCTTSBCC
T ss_pred eEEEECeEEEECCC-CccccCceEEEECCEEEEEcccccC----CCCCCEEEECCCCEeccCccccCccc
Confidence 57899999997654 3567889999999999999875321 22467999999999999999999995
|
| >d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.40 E-value=1.1e-13 Score=107.29 Aligned_cols=62 Identities=23% Similarity=0.374 Sum_probs=51.6
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccc
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTS 90 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~ 90 (478)
|+++|+||+|+++++ . .++||+|+||+|++|++..+ ..++++||++|++|+||+||.|+|+.
T Consensus 1 M~~likn~~v~~~~~---~-~~~Di~I~~g~I~~Ig~~~~------~~~~~vida~g~~v~P~~v~~~~~~~ 62 (128)
T d1k1da1 1 MTKIIKNGTIVTATD---T-YEAHLLIKDGKIAMIGQNLE------EKGAEVIDAKGCYVFPIVVGSDADLV 62 (128)
T ss_dssp CCEEEEEEEEECSSC---E-EEEEEEECSSBEEEEESSCC------CSSCCCEECTTCEEEECSTTSBCCEE
T ss_pred CCEEEECcEEECCCC---C-EEeeEEEECCEEEEEcCCCC------CCceEEeeeCCCeEeeeecccccceE
Confidence 578999999997542 2 45799999999999998653 24678999999999999998888874
|
| >d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Probab=99.38 E-value=1.4e-12 Score=119.88 Aligned_cols=188 Identities=13% Similarity=0.091 Sum_probs=103.3
Q ss_pred HHHhcCCCCCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhh--hcCCC--------Cc-hHH
Q 011766 209 YAKHHHAADGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD--TRKVD--------HG-TVT 277 (478)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~--~~~~~--------~~-~~~ 277 (478)
++.....+...++.+.........+...+.++++.+.+.+..+.+|+............ ..+.. .. ..+
T Consensus 85 l~~~~~~Gv~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~E~~~~~~~~~~~~~~~g~~~~~~~~~~rp~~aE 164 (330)
T d1nfga2 85 LEVLPDLGITSFKVFMAYRGMNMIDDVTLLKTLDKAVKTGSLVMVHAENGDAADYLRDKFVAEGKTAPIYHALSRPPRVE 164 (330)
T ss_dssp TTTGGGGTCCEEEEESSSTTTTBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSTHHHHHTSCHHHH
T ss_pred HhhhhhhcccceeeeccccccCCCCcHHHHHHHHHHHhcCCceeechHHHHHHHHHhhhhhccCCcCchhcccccChHHH
Confidence 33444444455665555444444677788889999999999999999764322111000 00000 00 001
Q ss_pred ------HHhhhCCCCCCeeeeeeccCC-hhHHHHHHhcCC--eEEECccchhh--------------ccCCCc-------
Q 011766 278 ------FLDKIEFLQNNLLSAHTVWVN-HTEIGLLSRAGV--KVSHCPASAMR--------------MLGFAP------- 327 (478)
Q Consensus 278 ------~l~~~~~~~~~~~i~h~~~~~-~~~~~~~~~~~~--~~~~~p~~~~~--------------~~~~~~------- 327 (478)
.+.-....+.+..+.|.+.-. -+.+.++++.|. ...+||.+... ..-.+|
T Consensus 165 ~~av~r~~~la~~~~~~lhi~HiSt~~~~~~i~~ak~~g~~vt~Et~ph~L~l~~~d~~~~~~~~~~~k~~PPLR~~~d~ 244 (330)
T d1nfga2 165 AEATARALALAEIVNAPIYIVHVTCEESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDFEGAKYVFTPPARAKKDH 244 (330)
T ss_dssp HHHHHHHHHHHHHHTCCEEECCCCSHHHHHHHHHHHHHTCCEEECEEGGGGTCCGGGGGCTTTGGGGGCCSSCCCCHHHH
T ss_pred HHHHHHHHHHHHHhCCeeeechhcchHHHHHHHHHHhcCCcccccccchhhhhhhhhhhcccccCceeeecCcCCcHHHH
Confidence 122222334455555544311 133455556654 56677774321 011233
Q ss_pred --HHHHHHCCCcEEEcCCCCCCCCC-------cCHHH--------HHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHh
Q 011766 328 --IKEMLHADICVSLGTDGAPSNNR-------MSIVD--------EMYLASLINKGREVFANGTTDPAALPAETVLRMAT 390 (478)
Q Consensus 328 --~~~~~~~gv~v~~gsD~~~~~~~-------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T 390 (478)
+.+.+..|...+++|||.|+... .+++. +..+..+.+. ..++++|++++++++|
T Consensus 245 ~aL~~~l~dG~Id~i~SDHaP~~~~~~~~~~~~~f~~ap~G~~gle~~lp~l~~~---------v~~~~l~l~~~v~~~S 315 (330)
T d1nfga2 245 DVLWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVYQG---------VNEGRISLTQFVELVA 315 (330)
T ss_dssp HHHHHHHHTTCCSCEECCBCCCCTTTTTTTTTTCGGGSCCCBCCTTTHHHHHHHH---------HHTTSSCHHHHHHHHT
T ss_pred HHHhhhhcCCceeeecCCCCCccchhhHhhccCCHhHCCCCcCHHHHHHHHHHHH---------HHcCCCCHHHHHHHHH
Confidence 33667889999999999875310 01110 0011111110 0123699999999999
Q ss_pred HHHHHHcCCCCCccc
Q 011766 391 INGAKSVLWDNDIGS 405 (478)
Q Consensus 391 ~~pA~~lgl~~~~G~ 405 (478)
.|||++|||.+++|+
T Consensus 316 ~nPAki~gL~p~KGt 330 (330)
T d1nfga2 316 TRPAKVFGMFPQKGT 330 (330)
T ss_dssp HHHHHHTTCTTTSSS
T ss_pred HHHHHHhCCCCCCCC
Confidence 999999999999996
|
| >d2icsa2 c.1.9.14 (A:55-321) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenine deaminase-like domain: Putative adenine deaminase EF0837 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.34 E-value=1.4e-12 Score=115.42 Aligned_cols=149 Identities=11% Similarity=0.021 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEE
Q 011766 234 DRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVS 313 (478)
Q Consensus 234 ~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~ 313 (478)
.+........+...+..+..|.......................... ........+......+........+....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 189 (267)
T d2icsa2 114 TPLELAKQIQQENQEIPLMVHIGSAPPHLDEILALMEKGDVLTHCFN----GKENGILDQATDKIKDFAWQAYNKGVVFD 189 (267)
T ss_dssp HHHHHHHHHHHTTTTCCEEEEECSSSSCHHHHHHHCCTTCEEESTTC----CSTTSSEETTTTEECHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHhcccceeeecccchhHHHHHHhhhhccchhHHHhh----hhccccccccccchHHHHHHHHhcCCeee
Confidence 34444444556667888999987765544333222211100000000 00011122222223445555666776655
Q ss_pred ECccchhhccCCCcHHHHH-HCCCcEEEcCCCCCC----CCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHH
Q 011766 314 HCPASAMRMLGFAPIKEML-HADICVSLGTDGAPS----NNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRM 388 (478)
Q Consensus 314 ~~p~~~~~~~~~~~~~~~~-~~gv~v~~gsD~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~ 388 (478)
..+..... ......... ..++...+++|.... .+..++..+|+.+... |||+.|||++
T Consensus 190 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---------------Gls~~eal~~ 252 (267)
T d2icsa2 190 IGHGTDSF--NFHVAETALREGMKAASISTDIYIRNRENGPVYDLATTMEKLRVV---------------GYDWPEIIEK 252 (267)
T ss_dssp CCCTTTSC--CHHHHHHHHHTTCCCSBCCCCBCHHHHHSSSCCCHHHHHHHHHHH---------------TCCHHHHHHT
T ss_pred ccCcchhh--hHHHHHHhhhhcccceeccceeecCCCCcchHHHHHHHHHHHHHc---------------CCCHHHHHHH
Confidence 54432211 112233333 344555666664321 1234566677654421 6999999999
Q ss_pred HhHHHHHHcCCCCCcc
Q 011766 389 ATINGAKSVLWDNDIG 404 (478)
Q Consensus 389 ~T~~pA~~lgl~~~~G 404 (478)
+|.|||++|||++ +|
T Consensus 253 aT~npA~~lgl~d-rG 267 (267)
T d2icsa2 253 VTKAPAENFHLTQ-KG 267 (267)
T ss_dssp TTHHHHHHTTCTT-SS
T ss_pred HHHHHHHHhCCCC-CC
Confidence 9999999999976 46
|
| >d1m7ja1 b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: D-aminoacylase domain: N-acyl-D-aminoacid amidohydrolase species: Alcaligenes faecalis [TaxId: 511]
Probab=99.34 E-value=1.1e-12 Score=84.93 Aligned_cols=55 Identities=25% Similarity=0.306 Sum_probs=45.7
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEee
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLP 80 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~P 80 (478)
++|++|+||+|+++.+ .....++|+|++|||++|++... ..+.++||++|++|+|
T Consensus 1 P~DllIkn~~i~d~~~--~~~~~~di~I~~g~I~~Ig~~~~------~~~~~vIDa~G~~v~P 55 (55)
T d1m7ja1 1 PFDYILSGGTVIDGTN--APGRLADVGVRGDRIAAVGDLSA------SSARRRIDVAGKVVSP 55 (55)
T ss_dssp CBSEEEESSEECCSSS--CCCEECEEEEETTEEEEEECCTT------SCBSCEEECTTCEEEE
T ss_pred CCcEEEECCEEECCCC--CceeEEEEEEECCEEEEEccCCC------CCCCEEEECCCCEECC
Confidence 4789999999997653 44567899999999999997543 2467899999999999
|
| >d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE) {Pseudomonas diminuta [TaxId: 293]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase (parathion hydrolase, PTE) species: Pseudomonas diminuta [TaxId: 293]
Probab=99.30 E-value=2.2e-10 Score=105.65 Aligned_cols=241 Identities=12% Similarity=0.079 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHhcCcceeecCC----ccCHHHHHHHHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCcccc
Q 011766 124 YISTLLCGIELIHSGVTCFAEAG----GQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFN 199 (478)
Q Consensus 124 ~~~~~~~~~~~l~~GvTtv~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (478)
.........++.++|||+++++. +.......+..+..+.+.+....+... .+.... ....+
T Consensus 46 ~e~~~~~l~~a~~~GvttvVd~~~~~~~~d~~~l~~~~~~~~~~~~~~~g~h~~---~~~~~~----~~~~~-------- 110 (331)
T d1i0da_ 46 AEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAEVSRAADVHIVAATGLWFD---PPLSMR----LRSVE-------- 110 (331)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECCCGGGTCCHHHHHHHHHHHTCEEECEEECCSC---CCHHHH----TCCHH--------
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCcCCHHHHHHHHHhcCCCEEEEEEEecC---cCcccC----ccCHH--------
Confidence 34445567778999999999864 234456666778888877654433211 011000 00001
Q ss_pred ccchhHHHHHHH----hcC-CC--CCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCC
Q 011766 200 FVSSSQKELYAK----HHH-AA--DGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVD 272 (478)
Q Consensus 200 ~~~~~~~~~~~~----~~~-~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~ 272 (478)
+....... ... .+ ....+... .........+.+.+.++.+++.|+++++|..........
T Consensus 111 ----~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~g~pv~~h~~~~~~~~~~-------- 177 (331)
T d1i0da_ 111 ----ELTQFFLREIQYGIEDTGIRAGIIKVAT-TGKATPFQELVLKAAARASLATGVPVTTHTAASQRDGEQ-------- 177 (331)
T ss_dssp ----HHHHHHHHHHHTCBTTTTBCCSEEEEEC-SSSCCHHHHHHHHHHHHHHHHHCCCEEEECCGGGTHHHH--------
T ss_pred ----HHHHHHHHhhhhhhccccCccceeeccc-cccccHHHHHHHHHHHHHHHHhCCeEEeeccchhhhhhh--------
Confidence 22222211 111 11 11111111 111111223457777889999999999998765433222
Q ss_pred CchHHHHhhhCCCCCCeeeeeecc-CChhHHHHHHhcCCeEE--ECccchhhc----------------cCCCcHHHHHH
Q 011766 273 HGTVTFLDKIEFLQNNLLSAHTVW-VNHTEIGLLSRAGVKVS--HCPASAMRM----------------LGFAPIKEMLH 333 (478)
Q Consensus 273 ~~~~~~l~~~~~~~~~~~i~h~~~-~~~~~~~~~~~~~~~~~--~~p~~~~~~----------------~~~~~~~~~~~ 333 (478)
....+...+.......+.|+.. ...+.+..+++.+..+. .++...... ......+++++
T Consensus 178 --~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~ 255 (331)
T d1i0da_ 178 --QAAIFESEGLSPSRVCIGHSDDTDDLSYLTALAARGYLIGLDHIPHSAIGLEDNASASALLGIRSWQTRALLIKALID 255 (331)
T ss_dssp --HHHHHHHTTCCGGGEEECSGGGCCCHHHHHHHHHTTCEEEECCTTCCCTTCTTCHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred --hhhhhhhcccCCcceEEEecCCcchHHHHHHHHhcCCceeecceeeeccchhhhccccCCccCCChhhhHHHHHHHHH
Confidence 2234445555556677888874 45577788888887754 444321100 01123456888
Q ss_pred CCC--cEEEcCCCCCCCCCcCHHH--HHHH----------HHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCC
Q 011766 334 ADI--CVSLGTDGAPSNNRMSIVD--EMYL----------ASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLW 399 (478)
Q Consensus 334 ~gv--~v~~gsD~~~~~~~~~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl 399 (478)
+|. .+.++||++........-. .... ..+... ....|+|++++.+++|.||||+|++
T Consensus 256 ~g~~d~i~~~tD~p~~~p~~~~~~~~~~~~~g~~g~~~~l~~~~~~---------~~~~gis~e~i~~i~~~NParlf~l 326 (331)
T d1i0da_ 256 QGYMKQILVSNDWLFGFSSYVTNIMDVMDRVNPDGMAFIPLRVIPF---------LREKGVPQETLAGITVTNPARFLSP 326 (331)
T ss_dssp TTCGGGEEECCCCCSEECSSSTTHHHHHHHHCTTGGGHHHHTHHHH---------HHHTTCCHHHHHHHHTHHHHHHHSC
T ss_pred hcCCCCEEECCCCCCcccccccCCCccccccCCCcHHHHHHHHHHH---------HHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 886 5789999964321110000 0000 000000 0124699999999999999999999
Q ss_pred CCCc
Q 011766 400 DNDI 403 (478)
Q Consensus 400 ~~~~ 403 (478)
++++
T Consensus 327 ~~k~ 330 (331)
T d1i0da_ 327 TLRA 330 (331)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8763
|
| >d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Probab=99.30 E-value=5.9e-12 Score=115.81 Aligned_cols=165 Identities=16% Similarity=0.077 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhh--hcCCCC--------ch-HH------HHhhhCCCCCCeeeeee
Q 011766 232 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD--TRKVDH--------GT-VT------FLDKIEFLQNNLLSAHT 294 (478)
Q Consensus 232 ~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~--~~~~~~--------~~-~~------~l~~~~~~~~~~~i~h~ 294 (478)
.++..+.++++.+.+.+..+.+|+............ ..+... .. .+ .+......+.+..+.|.
T Consensus 107 ~~d~~l~~~~~~~~~~~~~~~~H~E~~~l~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~~v~r~~~la~~~~~~~hi~hi 186 (325)
T d1gkra2 107 VSDGELFEIFQEIAACGSVIVVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRALLLQKEAGCRLIVLHV 186 (325)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSHHHHHHHSCHHHHHHHHHHHHHHHHHHCCEEEECCC
T ss_pred ccHHHHHHHHHHHHhcCCceEeccCcHHHHHHHHHHhhhcCCcccccccccCchHHHHHHHHHHHHHhhhcCcceecccc
Confidence 456778888999999999999998664322111110 001000 00 01 11112222334444444
Q ss_pred ccC-ChhHHHHHHhcCC--eEEECccchhh-----------ccCCCc---------HHHHHHCCCcEEEcCCCCCCCCCc
Q 011766 295 VWV-NHTEIGLLSRAGV--KVSHCPASAMR-----------MLGFAP---------IKEMLHADICVSLGTDGAPSNNRM 351 (478)
Q Consensus 295 ~~~-~~~~~~~~~~~~~--~~~~~p~~~~~-----------~~~~~~---------~~~~~~~gv~v~~gsD~~~~~~~~ 351 (478)
+.- .-+.++.+++.|. .+.+||..... ..-.+| +.+.+..|...+++|||.|+....
T Consensus 187 Ss~~~l~~i~~ak~~g~~vt~et~ph~L~lt~~~~~~~~~~~k~~PPlR~~~Dr~aL~~al~~G~id~i~SDHaPh~~~~ 266 (325)
T d1gkra2 187 SNPDGVELIHQAQSEGQDVHCESGPQYLNITTDDAERIGPYMKVAPPVRSAEMNIRLWEQLENGLIDTLGSDHGGHPVED 266 (325)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEEECHHHHSCCGGGHHHHGGGGCCSSCCCCHHHHHHHHHHHHHTCCCEECCCEECCCGGG
T ss_pred ccHHHHHhhhhhhhcCCceEEeecccccccchhhhhccCcccccchhhhhhhhhHHHHHHHhcCcceEEecCCCCCCHHH
Confidence 321 1133445555554 56788874321 111233 335677899999999997763210
Q ss_pred ------CHHH--------HHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCcc
Q 011766 352 ------SIVD--------EMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIG 404 (478)
Q Consensus 352 ------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G 404 (478)
+++. +..+..+.... ..++.+|++++++.+|.|||+++||.+++|
T Consensus 267 K~~~~~~~~~a~~G~~g~e~~lp~~~~~~--------v~~g~lsl~~~v~~~s~nPAki~gl~p~KG 325 (325)
T d1gkra2 267 KEPGWKDVWKAGNGALGLETSLPMMLTNG--------VNKGRLSLERLVEVMCEKPAKLFGIYPQKG 325 (325)
T ss_dssp TGGGGTCGGGSCCCBCCTTTHHHHHHHHT--------GGGTSSCHHHHHHHHTHHHHHHHTCTTTSS
T ss_pred hccCCCccccCCCCcccHHHHHHHHHHHH--------HHcCCCCHHHHHHHHhHHHHHHhCCCCCCC
Confidence 1110 00111111110 112359999999999999999999988887
|
| >d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Probab=99.30 E-value=2.2e-12 Score=99.43 Aligned_cols=64 Identities=17% Similarity=0.305 Sum_probs=53.0
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecc---cccccccc
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGF---VNTHVHTS 90 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGf---ID~H~H~~ 90 (478)
|+|++|+||+|++.+ . ...+||+|+||||++|++.... ..+.++||++|++|+||+ .|+|.|+.
T Consensus 1 M~dllIkn~~iv~~~---~-~~~~Di~I~dgkI~~i~~~~~~-----~~a~~~iDa~g~~v~P~~~vG~DAD~~l~ 67 (126)
T d1gkra1 1 MFDVIVKNCRLVSSD---G-ITEADILVKDGKVAAISADTSD-----VEASRTIDAGGKFVMPTLQVGSDADLLIL 67 (126)
T ss_dssp CEEEEEEEEEEEETT---E-EEEEEEEEETTEEEEEESCCTT-----CCEEEEEECTTCEEEESCCTTSBCCEEEE
T ss_pred CccEEEECcEEECCC---C-CEEEeEEEECCEEEEEcCcCCc-----ccceEEeehhhcccccceeecccchhhee
Confidence 579999999999742 2 3457999999999999986432 235689999999999998 99999985
|
| >d1yrra2 c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=2.3e-13 Score=123.06 Aligned_cols=66 Identities=14% Similarity=0.129 Sum_probs=52.9
Q ss_pred CCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCc
Q 011766 324 GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDI 403 (478)
Q Consensus 324 ~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~ 403 (478)
...+...++++|+++.++||..+. +..+++.+|+.+... .|||++|||+++|.||||+||+++++
T Consensus 232 ~~~~~~~~~~~g~~~~~gtd~~~g-~~~~l~~~~~~~v~~--------------~gls~~~al~~aT~n~A~~LGldd~i 296 (297)
T d1yrra2 232 FIFAGKTIYYRNGLCVDENGTLSG-SSLTMIEGVRNLVEH--------------CGIALDEVLRMATLYPARAIGVEKRL 296 (297)
T ss_dssp EEETTEEEEECSSCEECTTCCEEE-BCCCHHHHHHHHHHH--------------HCCCHHHHHHHHTHHHHHHTTCTTTS
T ss_pred ccCCcceEEEeCCEEEecCCCCcc-chhhHHHHHHHHHHH--------------hCCCHHHHHHHHHHHHHHHhCCCcCc
Confidence 345667788899999999998654 346788888765432 15999999999999999999999988
Q ss_pred c
Q 011766 404 G 404 (478)
Q Consensus 404 G 404 (478)
|
T Consensus 297 G 297 (297)
T d1yrra2 297 G 297 (297)
T ss_dssp S
T ss_pred C
Confidence 7
|
| >d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=99.29 E-value=9.6e-12 Score=116.22 Aligned_cols=180 Identities=13% Similarity=0.111 Sum_probs=98.2
Q ss_pred CCCeEEEEeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhh--hcCCCC--------c-------hHHHH
Q 011766 217 DGRIRIWFGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMD--TRKVDH--------G-------TVTFL 279 (478)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~--~~~~~~--------~-------~~~~l 279 (478)
...++++.... ....+.+.+.++++.+++.|..+.+|+.+.......... ..+... . ....+
T Consensus 107 v~~~k~f~~~~-~~~~~~~~l~~~l~~~~~~g~~v~~H~Ed~~~~~~~~~~~~~~g~~~~~~~~~~rP~~aE~~av~r~~ 185 (384)
T d2fvka2 107 VSSVKMFMTYP-GLQISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLTDAYYHGVSRPSIVEGEATNRAI 185 (384)
T ss_dssp CCEEEEESSST-TTBCCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHTTCCSTTHHHHTSCHHHHHHHHHHHH
T ss_pred ccccceecccc-ccccCHHHHHHHHHHHHhcCCceeeccccHHHHHHHHHHHhhcCCCChhhcccccccchhhHHHHHHH
Confidence 34444433322 234567778888999999999999998653322111100 001000 0 01123
Q ss_pred hhhCCCCCCeeeeeeccCC-hhHHHHHHhcC--CeEEECccchhhc----------------------------------
Q 011766 280 DKIEFLQNNLLSAHTVWVN-HTEIGLLSRAG--VKVSHCPASAMRM---------------------------------- 322 (478)
Q Consensus 280 ~~~~~~~~~~~i~h~~~~~-~~~~~~~~~~~--~~~~~~p~~~~~~---------------------------------- 322 (478)
......+.+..+.|.+.-. -+.++.+++.| +...+||.+....
T Consensus 186 ~la~~~g~~lhi~HiSt~~~ve~I~~ak~~G~~Vt~Et~ph~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 265 (384)
T d2fvka2 186 TLATTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHHHGEVESYGVGIDLSSISESPFTNPDD 265 (384)
T ss_dssp HHHHHTTCCEEECSCCCHHHHHHHHHHHHHTCCEEEEECHHHHHCCGGGGSCC--------CCSCCGGGSSSSTTTCTTC
T ss_pred HHHHhcCceEEecccccchhhHHHHHhhhcCCCEEEEeChHHhhccchhhcccccccccccccccccccccccccccccc
Confidence 3333445566666655321 13345555555 4577888643210
Q ss_pred -------cCCCcHH---------HHHHCCCcEEEcCCCCCCCCCc-------------------CHHH--------HHHH
Q 011766 323 -------LGFAPIK---------EMLHADICVSLGTDGAPSNNRM-------------------SIVD--------EMYL 359 (478)
Q Consensus 323 -------~~~~~~~---------~~~~~gv~v~~gsD~~~~~~~~-------------------~~~~--------~~~~ 359 (478)
.-.+|+| +.+..|...+++|||.|+.... +++. +..+
T Consensus 266 ~~~g~~~k~~PPLR~~~dr~aL~~~l~dG~Id~IaSDHaP~~~~eK~~~~~~~~~~~~~~~~~~df~~ap~G~~gle~~l 345 (384)
T d2fvka2 266 RFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIVGSDHCSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRM 345 (384)
T ss_dssp TTGGGGGCCSSCCCCTTSHHHHHHHHHHTSCSEECCCBCCCBSSCCSSTTBGGGGEEGGGTEESCGGGSCCCBCCTTTHH
T ss_pred cccCceeEEcCCCCCHHHHHHHHHHhhCCceeEEecCCCCCCHHHhcccccccccccccccccCccccCCCCCccHHHHH
Confidence 1123333 4568899999999998753110 1111 0111
Q ss_pred HHHHhcccccccCCCCCCCC-CCHHHHHHHHhHHHHHHcCCCCCccc
Q 011766 360 ASLINKGREVFANGTTDPAA-LPAETVLRMATINGAKSVLWDNDIGS 405 (478)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~-ls~~~al~~~T~~pA~~lgl~~~~G~ 405 (478)
..+...+ + ..++ +|++++++++|.|||++|||.+++|+
T Consensus 346 pll~~~~-------v-~~~~~~sl~~lv~~~s~nPAki~Gl~p~KGs 384 (384)
T d2fvka2 346 PLLYDYG-------Y-LRGNLTSMMKLVEIQCTNPAKVYGMYPQKGS 384 (384)
T ss_dssp HHHHHHT-------T-TTTSSSCHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred HHHHHHH-------H-hcCCCCCHHHHHHHHhHHHHHHhCCCCCCCC
Confidence 1121110 1 1223 58999999999999999999988885
|
| >d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Probab=99.25 E-value=1.3e-12 Score=99.86 Aligned_cols=60 Identities=20% Similarity=0.364 Sum_probs=49.0
Q ss_pred eEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeeccccccccc
Q 011766 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHT 89 (478)
Q Consensus 21 ~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~ 89 (478)
++||||+|++++ ...++||+|+||||++||+.... +.++++|||+|++|+||..+.|.|.
T Consensus 2 llIkng~iv~~~----~~~~~Di~I~~gkI~~Ig~~l~~-----~~~~~viDa~G~~v~~g~d~~~~d~ 61 (123)
T d1gkpa1 2 LLIKNGEIITAD----SRYKADIYAEGETITRIGQNLEA-----PPGTEVIDATGKYVFPGADLVVYDP 61 (123)
T ss_dssp EEEESCEEEETT----EEEECEEEESSSBCCEEESCCCC-----CTTCEEEECTTSEEEECCCEEEEET
T ss_pred EEEECcEEECCC----CCEEeeEEEECCEEEEeecCCCC-----CcchhhhhhccceEecCcceEEEec
Confidence 799999999753 23678999999999999986542 2367999999999999997666665
|
| >d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: D-aminoacylase domain: N-acyl-D-aminoacid amidohydrolase species: Alcaligenes faecalis [TaxId: 511]
Probab=99.20 E-value=2e-12 Score=85.20 Aligned_cols=59 Identities=25% Similarity=0.339 Sum_probs=45.9
Q ss_pred ccccCccccEEEEcCCCCCCC-CcCChhhhhhhccCCCCeeEEEEccEEEEECCeeecccHHHHHH
Q 011766 405 SLEAGKKADMVVVDPFSWPMV-PVHDRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLMRGRLFQ 469 (478)
Q Consensus 405 ~l~~G~~ADlvv~d~~~~~~~-~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~~~ 469 (478)
.|++|++|||||||++.+... ...+|. .....|.+|||||++++++|++++..+|+++|
T Consensus 1 ri~~G~~ADlvvfDp~~i~d~~~~~~~~------~~~~Gi~~v~VnG~~v~~~g~~~~~~~G~~lr 60 (61)
T d1m7ja2 1 QVQPGYYADLVVFDPATVADSATFEHPT------ERAAGIHSVYVNGAAVWEDQSFTGQHAGRVLN 60 (61)
T ss_dssp SCCTTSBCCEEEECTTTCBCCCCSSSTT------CCCBSEEEEEETTEEEEETTEECSCCCCCBCC
T ss_pred CCCCCcCCCEEEECHHHccCcccccccc------cccceeEEEEECCEEEEECCEECCCCCCEEee
Confidence 489999999999999854322 112221 23468999999999999999999988888764
|
| >d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease, catalytic domain {Bacillus pasteurii [TaxId: 1474]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Bacillus pasteurii [TaxId: 1474]
Probab=99.20 E-value=4.3e-11 Score=104.22 Aligned_cols=178 Identities=18% Similarity=0.181 Sum_probs=103.0
Q ss_pred EeccccccCCHHHHHHHHHHHHHcCCceeEeccC---ChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccC---
Q 011766 224 FGIRQIMNATDRLLLETRDMAREFKTGIHMHVAE---IPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV--- 297 (478)
Q Consensus 224 ~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~--- 297 (478)
+..|+.+..++..+...+..|.++++++.+|... .....+... +.+ .|. .|..+.
T Consensus 88 lKiHEDwGatpa~id~~L~vad~~dvqv~iHtDtlNE~gfve~T~~--------------a~~---gRt--iH~~HtEGa 148 (390)
T d4ubpc2 88 LKIHEDWGATPASIDRSLTVADEADVQVAIHSDTLNEAGFLEDTLR--------------AIN---GRV--IHSFHVEGA 148 (390)
T ss_dssp EEEEGGGCCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHH--------------HHT---TCC--EEETTTTST
T ss_pred eecccccccCHHHHHHHHHHhhccCceEEEecCCcccceehhhHHH--------------HhC---Cce--eecccCCCC
Confidence 5558888899999999999999999999999754 222222211 111 111 122221
Q ss_pred ----ChhHHHHHHhcCCeE-EECccch---------------------------------hhccCCCcHHHHHHCCCcEE
Q 011766 298 ----NHTEIGLLSRAGVKV-SHCPASA---------------------------------MRMLGFAPIKEMLHADICVS 339 (478)
Q Consensus 298 ----~~~~~~~~~~~~~~~-~~~p~~~---------------------------------~~~~~~~~~~~~~~~gv~v~ 339 (478)
.|+.++.+...++-- ++.|+.- .|...+..=..|.+.|..-.
T Consensus 149 GGGHaPDii~~~g~~nvLpsSTnPT~Pyt~nt~~EhldM~MvcHhL~~~ipeDvafAesRiR~eTiaAEdvLHD~GaiSi 228 (390)
T d4ubpc2 149 GGGHAPDIMAMAGHPNVLPSSTNPTRPFTVNTIDEHLDMLMVCHHLKQNIPEDVAFADSRIRPETIAAEDILHDLGIISM 228 (390)
T ss_dssp TSSSTTTGGGGGGSTTEEEBCCSTTSSCBTTHHHHHHHHHHHHHTCCTTSHHHHHHHHHHSCHHHHHHHHHHHHTTSSCB
T ss_pred CCCCCchhHHhcCCCcccCCCCCCCCCCccCchhhhcCeEEeeccCCCCChhhHHHHhhcccchhhhhHHHhhhcCceee
Confidence 123333333333221 1222200 00011122235778999999
Q ss_pred EcCCCCCCCCCcCH-HHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEc
Q 011766 340 LGTDGAPSNNRMSI-VDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVD 418 (478)
Q Consensus 340 ~gsD~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d 418 (478)
++||+-..+.-... .+.++.+......+..+..-....-..-...-+..+|.|||.+.|+++.+|+|++||.||.+++.
T Consensus 229 ~sSDsQaMGRvgEvi~Rtwq~A~kmk~qrG~l~~d~~~~DN~RvkRYiAKyTINPAIahGish~VGSvE~GKlADG~a~~ 308 (390)
T d4ubpc2 229 MSTDALAMGRAGEMVLRTWQTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADGDLIH 308 (390)
T ss_dssp CCCCBTTSSCTTCHHHHHHHHHHHHHHHHCSCTTCCSSCCHHHHHHHHHTTTHHHHHHHTCTTTSSSCCTTSBCCTTHHH
T ss_pred eccCcccccccchHHHhHHHHHHHHHHhccCCCCccccCCCchhhhcccccccChhHhcCcccccCcccCCcccCCcccc
Confidence 99998665443333 34455555444333222111111112346677889999999999999999999999999966655
Q ss_pred CC
Q 011766 419 PF 420 (478)
Q Consensus 419 ~~ 420 (478)
..
T Consensus 309 ~t 310 (390)
T d4ubpc2 309 DT 310 (390)
T ss_dssp HS
T ss_pred Cc
Confidence 43
|
| >d3be7a1 b.92.1.9 (A:3-56,A:360-400) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Zn-dependent arginine carboxypeptidase species: Unidentified organism [TaxId: 32644]
Probab=99.15 E-value=7.2e-13 Score=94.26 Aligned_cols=62 Identities=21% Similarity=0.155 Sum_probs=51.5
Q ss_pred HHHHHHhHHHHHHcCCCCC--ccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEECC
Q 011766 384 TVLRMATINGAKSVLWDND--IGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKNK 457 (478)
Q Consensus 384 ~al~~~T~~pA~~lgl~~~--~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~g 457 (478)
++++++|++||++++++++ +|+|++|++|||++++.||+. |... ..++..||++|+++.++|
T Consensus 32 ~ai~~~t~~~A~il~l~d~illG~I~~Gk~ADlvlvdgnPL~-----dI~~-------l~~i~~Vik~G~v~k~e~ 95 (95)
T d3be7a1 32 AEIGKINTKDATVISIPDLILIPQIKEGFDADIVGVIENPLA-----NIRT-------LEEVAFVMKEGKVYKREG 95 (95)
T ss_dssp EEEECCCCSSSEEEEEEEEEEEESCCTTSBCCEEEESSCTTT-----CGGG-------TTSCCEEEETTEEEEECC
T ss_pred HHHHhhccChHHhcCCCCccccceeccCceeeEEEEcCCchh-----hhHH-------hcCCCEEEECCEEEcCCC
Confidence 4688899999999999988 499999999999999999554 3211 257999999999777764
|
| >d2i9ua1 b.92.1.4 (A:9-66,A:377-427) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.12 E-value=2.9e-12 Score=95.67 Aligned_cols=66 Identities=17% Similarity=0.269 Sum_probs=59.8
Q ss_pred HhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCC--cCChhhhhhhccCCCCeeEEEEccEEEE
Q 011766 389 ATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVP--VHDRITSLVYCMRTENVVSVMCNGQWVM 454 (478)
Q Consensus 389 ~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~--~~d~~~~~~~~~~~~~v~~v~v~G~~v~ 454 (478)
+|.++|+.+++++++|.|++||.||++++|.+.....| ..++++.+++......|+.|||+|+.||
T Consensus 42 at~~ga~~~~~~~~ig~~e~Gk~AD~vviD~~~~~~~~~~~~d~L~~li~~gd~r~V~~V~V~G~~VY 109 (109)
T d2i9ua1 42 DKYKGNPIIDFRNNIIIFEEGYDFDALVINDSNLYPEDYDLTERLERFIYLGDDRNIMKRYVCGNEIF 109 (109)
T ss_dssp GGGTTSCEEEEEEEEEECSTTCBCCEEEECCTTSCGGGSCHHHHHHHHHHHCCGGGEEEEEETTEEEC
T ss_pred HHhCCceeeccccceeeecCCCEeeEEEEcCCCcchhhhhhhhHHHHheeeCCCCceeEEEECCEECC
Confidence 58899999999999999999999999999988655555 4578899999999999999999999997
|
| >d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Probab=99.08 E-value=1.7e-09 Score=98.50 Aligned_cols=162 Identities=14% Similarity=0.071 Sum_probs=84.8
Q ss_pred cccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhc----------CCCCch---HHHHhhhCCCCCCeeeeeec
Q 011766 229 IMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTR----------KVDHGT---VTFLDKIEFLQNNLLSAHTV 295 (478)
Q Consensus 229 ~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~----------~~~~~~---~~~l~~~~~~~~~~~i~h~~ 295 (478)
....+...+.++++.+.+.+..+.+|+.............. +..... ...+......+.+..+.|.+
T Consensus 100 ~~~~d~~~l~~~~~~~~~~~~~~~~h~e~~~~~~~~~~~~~~~~~~~~~~rp~~~E~~ai~r~~~la~~~~~~~~i~HiS 179 (310)
T d1xrta2 100 SPVMDSSVMRKALELASQLGVPIMDHCEDDKLAYGVINEGEVSALLGLSSRAPEAEEIQIARDGILAQRTGGHVHIQHVS 179 (310)
T ss_dssp SCCCCHHHHHHHHHHHHHHTCEEEECCCGGGGTC--------------------CHHHHHHHHHHHHHHHCCEEEESCCC
T ss_pred CCccCHHHHHHHHHHhhhhhhhhhhccchhhhhhhhhhhhhcccccCccccchHHHHHHHHHHHHHHhhcCCeeeccccc
Confidence 33457788999999999999999999865332211111000 000000 01111222233445555554
Q ss_pred cCC-hhHHHHHHhcC--CeEEECccchhhc-----------cCCCc---------HHHHHHCCCcEEEcCCCCCCCCCcC
Q 011766 296 WVN-HTEIGLLSRAG--VKVSHCPASAMRM-----------LGFAP---------IKEMLHADICVSLGTDGAPSNNRMS 352 (478)
Q Consensus 296 ~~~-~~~~~~~~~~~--~~~~~~p~~~~~~-----------~~~~~---------~~~~~~~gv~v~~gsD~~~~~~~~~ 352 (478)
... -+.++.+++.| +.+.+||...... .-.+| +.+.+..|...+++||+.|+.....
T Consensus 180 t~~~l~~i~~a~~~g~~vt~e~~ph~L~l~~~~~~~~~~~~k~~PplR~~~d~~aL~~al~~G~id~i~SDHaPh~~~~K 259 (310)
T d1xrta2 180 TKLSLEIIEFFKEKGVKITCEVNPNHLLFTEREVLNSGANARVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEK 259 (310)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEECGGGGC----------------------CCHHHHHHHHHHTCSCEECCCBCCCCC---
T ss_pred hHHHHHHHHHHHHcCCceecchHHHHhhccccccccccchhhhcccCCCHHHHHHHHHHHhcCCCeEEecCCCCCCHHHc
Confidence 321 13344455555 4567888754211 01123 3356778999999999987632111
Q ss_pred --HHHH--------HHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCC
Q 011766 353 --IVDE--------MYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLW 399 (478)
Q Consensus 353 --~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl 399 (478)
++.. ..+..+... ..+++++++++++.+|.|||+++||
T Consensus 260 ~~~~~~~~G~~g~e~~lp~l~~~---------v~~g~l~l~~~v~~~s~npAki~gL 307 (310)
T d1xrta2 260 ELVEFAMPGIIGLQTALPSALEL---------YRKGIISLKKLIEMFTINPARIIGV 307 (310)
T ss_dssp --------CCCCGGGHHHHHHHH---------HHTTSSCHHHHHHHHTHHHHHHHTC
T ss_pred cCcccCCCCceeHHHHHHHHHHH---------HHcCCCCHHHHHHHHHHHHHHHhCC
Confidence 0000 011111110 0134589999999999999999999
|
| >d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.05 E-value=1e-10 Score=91.32 Aligned_cols=63 Identities=14% Similarity=0.254 Sum_probs=51.7
Q ss_pred eeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecc-cccccccch
Q 011766 20 TMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGF-VNTHVHTSQ 91 (478)
Q Consensus 20 ~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGf-ID~H~H~~~ 91 (478)
.++||||+|++.+ .. ..+||+|+||+|++|+..... ..++++||+.|++++||. .|+|.|+..
T Consensus 2 k~lIkng~iv~~~---~~-~~~DilIedG~I~~Ig~~l~~-----~~~a~vIDa~G~~v~~~~G~dAdl~i~D 65 (142)
T d1kcxa1 2 RLLIRGGRIINDD---QS-FYADVYLEDGLIKQIGENLIV-----PGGVKTIEANGRMVIIAVGSDADVVIWD 65 (142)
T ss_dssp CEEEESCEEECSS---CE-EECEEEEETTEEEEEESSCCS-----CSSCEEEECTTCEEECCTTSBCCEEEEE
T ss_pred cEEEECCEEECCC---Cc-EEeeEEEECCEEeEEeccCCC-----CccceeechhhcceeecccccceEEEEe
Confidence 5899999999743 22 357999999999999976542 236799999999999997 999999853
|
| >d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease, catalytic domain {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Helicobacter pylori [TaxId: 210]
Probab=99.05 E-value=9.3e-10 Score=95.76 Aligned_cols=174 Identities=16% Similarity=0.126 Sum_probs=100.1
Q ss_pred EeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccC------
Q 011766 224 FGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV------ 297 (478)
Q Consensus 224 ~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~------ 297 (478)
+..|+.+..++..+...+..|.++++++.+|......... ....+.+++ .|. .|..|.
T Consensus 87 lKiHEDwGatp~~Id~~L~vad~~dvqv~iHtDtlNE~Gf-----------ve~T~~a~~---gRt--iH~~HtEGaGGG 150 (389)
T d1e9yb2 87 FKIHEDWGTTPSAINHALDVADKYDVQVAIHTDTLNEAGC-----------VEDTMAAIA---GRT--MHTFHTEGAGGG 150 (389)
T ss_dssp EEECGGGCCCHHHHHHHHHHHHHTTCEEEECCCTTCSSCC-----------HHHHHHHHT---TCC--EEETTTTSTTSC
T ss_pred eeccccccCCHHHHHHHHHHHHhhCceEEecCCCcccccc-----------hhhHHHHhC---CCc--ceeeecCCCCCC
Confidence 5558888999999999999999999999999864321110 011111111 111 232221
Q ss_pred -ChhHHHHHHhcCCeEE-ECccchh---------------------------------hccCCCcHHHHHHCCCcEEEcC
Q 011766 298 -NHTEIGLLSRAGVKVS-HCPASAM---------------------------------RMLGFAPIKEMLHADICVSLGT 342 (478)
Q Consensus 298 -~~~~~~~~~~~~~~~~-~~p~~~~---------------------------------~~~~~~~~~~~~~~gv~v~~gs 342 (478)
.|+.++.+...++--+ +.|+.-+ |...+..=..|.+-|..-.++|
T Consensus 151 HAPDii~~~~~~nvLpsSTnPT~Pyt~nt~~EhldMlmvcHhL~~~ipeDvafAesRiR~eTIaAEdvLhD~GaiSi~sS 230 (389)
T d1e9yb2 151 HAPDIIKVAGEHNILPASTNPTIPFTVNTEAEHMDMLMVCHHKDKSIKEDVQFADSRIRPQTIAAEDTLHDMGAFSITSS 230 (389)
T ss_dssp STTTGGGGGGSTTEEEEECGGGCSCBTTHHHHHHHHHHHTTTCCSSCHHHHHHHHHHCCHHHHHHHHHHHHTTSCCEECC
T ss_pred CccHHHHHccCCCccCCCCCCCCCcccccHHHhhchhhhhccCCCCCchhHHHHhhcccchhhhhHHHhhccCceeeecc
Confidence 1344444444443322 2222100 0011122235778999999999
Q ss_pred CCCCCCCCcCH-HHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCccccccCcccc
Q 011766 343 DGAPSNNRMSI-VDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSLEAGKKAD 413 (478)
Q Consensus 343 D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~AD 413 (478)
|+...+.-... .+.++.+......+..+.......-..-...-+..+|.|||...|+++.+|+|++||.|+
T Consensus 231 DsqaMGRvgEvi~RtwQtA~kmk~~rG~l~~d~~~~DN~RvkRYiAKYTINPAIahGis~~VGSvE~GK~a~ 302 (389)
T d1e9yb2 231 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVHH 302 (389)
T ss_dssp CTTSSCCTTSHHHHHHHHHHHHHHHHCSCSSCCSSSCHHHHHHHHGGGTHHHHHHTTCTTTSSSSCTTSBGS
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhhcCCccCCCcchHHHHhhhhhcccChHHhcCchhccCccccccccc
Confidence 98766543333 344555544433333222111111123366677899999999999999999999999874
|
| >d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase, catalytic domain {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: D-aminoacylase, catalytic domain domain: N-acyl-D-aminoacid amidohydrolase, catalytic domain species: Alcaligenes faecalis [TaxId: 511]
Probab=99.02 E-value=1.1e-09 Score=101.17 Aligned_cols=181 Identities=15% Similarity=0.067 Sum_probs=97.1
Q ss_pred hHHHHHHHhcCCCCCCeEEEEecccccc--CCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhh
Q 011766 204 SQKELYAKHHHAADGRIRIWFGIRQIMN--ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDK 281 (478)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~ 281 (478)
...+++++..+.+. +.+.++....+. .+.+++.++.+.+.++|..+..|........... ..+.+..
T Consensus 109 ~M~~ll~eal~~GA--~G~Stgl~y~P~~~A~~~El~~lak~~~~~g~~~~~h~r~~~~~~~~~---------~~e~~~~ 177 (358)
T d1m7ja3 109 AMQALADDALASGA--IGISTGAFYPPAAHASTEEIIEVCRPLITHGGVYATHMRDEGEHIVQA---------LEETFRI 177 (358)
T ss_dssp HHHHHHHHHHHHTC--CEEEEETTSGGGTTCCHHHHHHHHTHHHHHTCEEEEECSCSSTTHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHhcCC--cccccCCcccccccCCHHHHHHHHHHHHhcCCeeeeeeccccccHHHH---------HHHHHHH
Confidence 55566666555443 333355555554 3778888889999999999999986543221110 1122333
Q ss_pred hCCCCCCeeeeeeccCCh-------hHHHHH----HhcCCeEEECccchhh-----------------------------
Q 011766 282 IEFLQNNLLSAHTVWVNH-------TEIGLL----SRAGVKVSHCPASAMR----------------------------- 321 (478)
Q Consensus 282 ~~~~~~~~~i~h~~~~~~-------~~~~~~----~~~~~~~~~~p~~~~~----------------------------- 321 (478)
....+.+..+.|...... +.++.. +...+...+.|+....
T Consensus 178 a~~~g~~~~ish~~~~~~~~~~~~~~~~~~~~~a~~G~~i~~d~yPy~ag~t~l~~~~~~~~~~~~~~~~~~~~~~~G~~ 257 (358)
T d1m7ja3 178 GRELDVPVVISHHKVMGKLNFGRSKETLALIEAAMASQDVSLDAYPYVAGSTMLKQDRVLLAGRTLITWCKPYPELSGRD 257 (358)
T ss_dssp HHHHTSCEEECSCCCCSGGGTTTHHHHHHHHHHHHHHSCEEEEECSCSCEEEECCCCTTTTSSCEEEEEESSCGGGTTCB
T ss_pred HHHcCCceEecccccCCCcchhhHHHHHHHHHHHhcCCCcceeecCccccccccchhhhhhccchhhhccccChhhccCc
Confidence 333345566666544332 111211 1224556666662100
Q ss_pred ------ccCCC---------------------cHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCC
Q 011766 322 ------MLGFA---------------------PIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGT 374 (478)
Q Consensus 322 ------~~~~~---------------------~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (478)
..+.. .+.+++.. -.+.+|||+.++.....+..--....++... .
T Consensus 258 l~eiA~~~g~~p~d~~~dl~~~~~~~~~~~e~~v~~~l~~-p~~~igSDgga~~~~~hpr~~gtf~r~L~~~-------v 329 (358)
T d1m7ja3 258 LEEIAAERGKSKYDVVPELQPAGAIYFMMDEPDVQRILAF-GPTMIGSDGLPHDERPHPRLWGTFPRVLGHY-------S 329 (358)
T ss_dssp HHHHHHHTTSCHHHHHHHHCSEEEEECCCCHHHHHHHHHS-TTEEECCCCCTTCSSCCTHHHHHHHHHHCCC-------C
T ss_pred HHHHHHHcCCCHHHHHHHHhhccchhhcCCHHHHHHHHhC-CCceEEcCcccCCCCcCCCCcccHHHHHHHH-------h
Confidence 01111 23355544 3467899987654332222111111222221 2
Q ss_pred CCCCCCCHHHHHHHHhHHHHHHcCCCCCcc
Q 011766 375 TDPAALPAETVLRMATINGAKSVLWDNDIG 404 (478)
Q Consensus 375 ~~~~~ls~~~al~~~T~~pA~~lgl~~~~G 404 (478)
++...||+++|++.+|+.||+.|||.++ |
T Consensus 330 Re~~~lsLeeAI~k~T~~pA~~~Gl~dR-G 358 (358)
T d1m7ja3 330 RDLGLFPLETAVWKMTGLTAAKFGLAER-G 358 (358)
T ss_dssp CCTCSSCHHHHHHTTTHHHHHHHTCTTC-S
T ss_pred cCCCcCCHHHHHHHHHHHHHHHhCCCCC-C
Confidence 2344599999999999999999999654 5
|
| >d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Isoaspartyl dipeptidase, catalytic domain domain: Isoaspartyl dipeptidase, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=8.4e-09 Score=92.05 Aligned_cols=25 Identities=20% Similarity=0.089 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCcc
Q 011766 379 ALPAETVLRMATINGAKSVLWDNDIG 404 (478)
Q Consensus 379 ~ls~~~al~~~T~~pA~~lgl~~~~G 404 (478)
|+|++++++++|+|||++|||++ +|
T Consensus 260 gls~~~al~~aT~npAr~lGL~~-kG 284 (284)
T d1onwa2 260 DFSISDALRPLTSSVAGFLNLTG-KG 284 (284)
T ss_dssp CCCHHHHHGGGTHHHHHHTTCTT-CS
T ss_pred CCCHHHHHHHHHHHHHHHhCCCC-CC
Confidence 69999999999999999999965 56
|
| >d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenosine/AMP deaminase domain: Adenosine deaminase (ADA) species: Plasmodium yoelii [TaxId: 5861]
Probab=98.91 E-value=3.5e-08 Score=91.03 Aligned_cols=135 Identities=16% Similarity=0.177 Sum_probs=96.3
Q ss_pred HHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccC--ChhHHHHHHhcCCeEEE
Q 011766 237 LLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV--NHTEIGLLSRAGVKVSH 314 (478)
Q Consensus 237 l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~--~~~~~~~~~~~~~~~~~ 314 (478)
...+++.|++.|+++++|+.+.... .......+....++. ..|+||..+ +++.++++++.++.+.+
T Consensus 203 ~~~~f~~ar~~gl~it~HaGE~~~~-----------~~~~~i~~ai~~l~~-~RIgHGv~~~~d~~l~~~l~~~~I~lei 270 (357)
T d2amxa1 203 HKDVYHSVRDHGLHLTVHAGEDATL-----------PNLNTLYTAINILNV-ERIGHGIRVSESDELIELVKKKDILLEV 270 (357)
T ss_dssp GHHHHHHHHHTTCEEEEEESCCTTC-----------SSSHHHHHHHHTSCC-SEEEECGGGGGCHHHHHHHHHHTCEEEE
T ss_pred hHHHHHHHHhcCCcccccccccCCC-----------CChHHHHHHHHccCC-cccccchheecCHHHHHHHHHhCceEEE
Confidence 5567899999999999999885321 011222233333333 358999998 68899999999999999
Q ss_pred Cccchhhcc-----CCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHH
Q 011766 315 CPASAMRML-----GFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMA 389 (478)
Q Consensus 315 ~p~~~~~~~-----~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~ 389 (478)
||.+|.... ...|++.+++.|++++++||.+... ..++..+...+.... ++|.++.. .+
T Consensus 271 CPtSN~~~~~~~~~~~HP~~~l~~~Gv~v~l~TDDp~~f-~t~ls~ey~~~~~~~--------------~ls~~el~-~l 334 (357)
T d2amxa1 271 CPISNLLLNNVKSMDTHPIRKLYDAGVKVSVNSDDPGMF-LSNINDNYEKLYIHL--------------NFTLEEFM-IM 334 (357)
T ss_dssp CHHHHHHTTSSSCSTTCTHHHHHHTTCEEEECCBCHHHH-TCCHHHHHHHHHHHH--------------CCCHHHHH-HH
T ss_pred CCcchhhhccCCCcccCHHHHHHHCCCeEEEeCCCchhh-CCCHHHHHHHHHHHc--------------CCCHHHHH-HH
Confidence 999998662 3458999999999999999986432 234666655544332 58999844 57
Q ss_pred hHHHHHHcCC
Q 011766 390 TINGAKSVLW 399 (478)
Q Consensus 390 T~~pA~~lgl 399 (478)
+.|+-+..-+
T Consensus 335 ~~nsi~~sF~ 344 (357)
T d2amxa1 335 NNWAFEKSFV 344 (357)
T ss_dssp HHHHHHHCCS
T ss_pred HHHHHHHhCC
Confidence 7777776655
|
| >d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.91 E-value=1.3e-09 Score=85.76 Aligned_cols=64 Identities=20% Similarity=0.331 Sum_probs=51.3
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeec-ccccccccch
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPG-FVNTHVHTSQ 91 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PG-fID~H~H~~~ 91 (478)
.+++|+||+|++.+ . ...+||+|+||+|.+|+.+... ..++++||+.|++++|+ ..|+|.|+..
T Consensus 2 ~~iLIkng~iv~~~---~-~~~~DIlI~~G~I~~I~~~i~~-----~~~~~iida~gk~v~i~~G~dad~~i~d 66 (150)
T d2ftwa1 2 GTILIKNGTVVNDD---R-YFKSDVLVENGIIKEISKNIEP-----KEGIKVVDATDKLLLIDVGCDGDIVIWD 66 (150)
T ss_dssp CCEEEESCEEECSS---C-EEECEEEEETTEEEEEESCCCC-----CSSCCEEECTTCEEECSTTSBCCEEEEE
T ss_pred CCEEEECCEEECCC---C-cEEeeEEEECCEEEEEeccCCC-----CCccEEEecccceeeeecCccCceEEEe
Confidence 56899999999732 2 3567999999999999986542 24679999999988555 6999999954
|
| >d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase homology protein species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=3.4e-08 Score=88.79 Aligned_cols=232 Identities=12% Similarity=0.082 Sum_probs=125.3
Q ss_pred HHHHHHHhcCcceeecCC----ccCHHHHHHHHHHhCCeEEEecccccCCCCCCCcccccCCcccCCCCCCccccccchh
Q 011766 129 LCGIELIHSGVTCFAEAG----GQHVSEMAKAVELLGLRACLVQSTMDCGEGLPASWAVRTTDDCIQPDSSISFNFVSSS 204 (478)
Q Consensus 129 ~~~~~~l~~GvTtv~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (478)
....++.++||+++++.. +.......+..+..+.+.+....+.... ..+........+. ....
T Consensus 37 ~~l~~~~~~Gv~~iV~~t~~~~g~d~~~~~~la~~~~~~i~~~~G~hp~~-~~p~~~~~~~~~~------------~~~~ 103 (291)
T d1bf6a_ 37 QEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQDA-FFPEHVATRSVQE------------LAQE 103 (291)
T ss_dssp HHHHHHHHTTEEEEEECCCGGGTCCHHHHHHHHHHHCCEEEEEECCCCGG-GCCTHHHHSCHHH------------HHHH
T ss_pred HHHHHHHHcCCCEEEEcCCCccccCHHHHHHHHHHcCCCeeeeeeecCcc-cCCcccCcCCHHH------------HHHH
Confidence 345667889999998753 2345566667778888776543332111 0111111000000 0001
Q ss_pred HHHHHHHhcCCCCCCeEEE--Eeccccc--cCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHh
Q 011766 205 QKELYAKHHHAADGRIRIW--FGIRQIM--NATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLD 280 (478)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (478)
..+.+.............. .+..... ....+.+++.+++|++.|++|.+|+.......+ ....+.
T Consensus 104 ~~~~i~~~~~~~~~~~~~IGe~g~d~~~~~~~q~~~f~~~~~~A~~~~lPv~iH~r~~~~~~e-----------~~~~l~ 172 (291)
T d1bf6a_ 104 MVDEIEQGIDGTELKAGIIAEIGTSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFSTMGLE-----------QLALLQ 172 (291)
T ss_dssp HHHHHHTCSTTSSCCEEEEEEEECBTTBCCHHHHHHHHHHHHHHHHHCCCEEEECGGGCSHHH-----------HHHHHH
T ss_pred HHHHHHHHHhccCceEEEEEeeccccCCCCHHHHHHHHHHHHHHHHhCCCeEEeccchhhhHH-----------HHHHHH
Confidence 1222222222212222111 1221111 122345778889999999999999854322111 234455
Q ss_pred hhCCCCCCeeeeee-ccCChhHHHHHHhcCCeEEECccchhhc----cCCCcHHHHHHCC--CcEEEcCCCCCCC-----
Q 011766 281 KIEFLQNNLLSAHT-VWVNHTEIGLLSRAGVKVSHCPASAMRM----LGFAPIKEMLHAD--ICVSLGTDGAPSN----- 348 (478)
Q Consensus 281 ~~~~~~~~~~i~h~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~----~~~~~~~~~~~~g--v~v~~gsD~~~~~----- 348 (478)
..+....+.++.|+ ..-+.+.+.++.+.|..+.+.-...... .....++++++.+ -++.++||++...
T Consensus 173 ~~~~~~~~~~~~H~~f~~~~e~~~~~~~~G~~i~~~g~~~~~~~~~~~~~~~~~~lv~~~p~drilleTD~p~~~p~~~~ 252 (291)
T d1bf6a_ 173 AHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDITRRSHLKAN 252 (291)
T ss_dssp HTTCCGGGEEECCCCSSCCHHHHHHHHHTTCEEEECCTTCTTTSCHHHHHHHHHHHHHTTCGGGEEECCCCCSGGGSGGG
T ss_pred HhCCCcccceecccCCCCCHHHHHHHHhcCeeEEecccccccCCcHHHhHHHHHHHHHhCCchhEEEecCCCCccccccC
Confidence 55555566778898 4557788999999999888753221110 1123467788776 4699999985321
Q ss_pred --CCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHc
Q 011766 349 --NRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSV 397 (478)
Q Consensus 349 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~l 397 (478)
.....+-......+.. .|+|.+++-+..+.||++++
T Consensus 253 g~~~~~~~~~~~~~~l~~-------------~g~s~e~i~~i~~~Np~rlf 290 (291)
T d1bf6a_ 253 GGYGYDYLLTTFIPQLRQ-------------SGFSQADVDVMLRENPSQFF 290 (291)
T ss_dssp TSCCTTHHHHTHHHHHHH-------------TTCCHHHHHHHHTHHHHHHC
T ss_pred CCCCchhHHHHHHHHHHH-------------cCCCHHHHHHHHHHHHHHHc
Confidence 1111111111111111 26999999999999999987
|
| >d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Probab=98.76 E-value=6.2e-09 Score=77.90 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=47.4
Q ss_pred cceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecc
Q 011766 18 SSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGF 82 (478)
Q Consensus 18 ~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGf 82 (478)
|++++|+||+|+++. +......+|+|++|+|++|++.... ..+++||++|+++.||+
T Consensus 1 m~~~likng~viDp~--~g~~~~~DllI~~GkI~~I~~~i~~------~~a~viD~~g~~~~~~l 57 (112)
T d1xrta1 1 MLKLIVKNGYVIDPS--QNLEGEFDILVENGKIKKIDKNILV------PEAEIIDAKGLIVCPTL 57 (112)
T ss_dssp CCEEEEESCEEEEGG--GTEEEECEEEEETTEEEEEESSCCC------SSEEEEECTTSEEEECC
T ss_pred CceeEEeCeEEECCC--CCccceeeEEEECCEEEEeecCCCc------ccceEEehhccccccee
Confidence 578999999999654 4555678999999999999976432 35689999999999997
|
| >d1e9yb1 b.92.1.1 (B:1-131,B:432-480) alpha-Subunit of urease {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Helicobacter pylori [TaxId: 210]
Probab=98.70 E-value=4.6e-08 Score=76.03 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=54.9
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhh-------hhhhccCCCeEEeCCCCEEeecc----ccc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADI-------LQQFSQMADQIIDLQSQILLPGF----VNT 85 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~-------~~~~~~~~~~viD~~G~~v~PGf----ID~ 85 (478)
...|++|.|+.|++. .-+.+++|.|+||||+.||+...- +...-...+++|.++|+++.||= ||+
T Consensus 64 ~~~D~vitna~iid~----~Gi~kadiGikdG~I~~iGkaGnPd~mdgv~~~~iig~~Tevi~geg~I~TaGADlVlwd~ 139 (180)
T d1e9yb1 64 EELDLIITNALIVDY----TGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGADLVLWSP 139 (180)
T ss_dssp TCCSEEEEEEEEEET----TEEEEEEEEEETTEEEEEECCBCTTTSSSCCGGGBCCTTCEEEECTTCEEEECCCEEEECT
T ss_pred cccceEEEeeEEecc----CCeEEeeeeeeCCEEEEeeccCCccccCCCCCCeEECCCceEEecCCceEecCcceEEEch
Confidence 347999999999964 235778999999999999975321 11123456789999999999996 999
Q ss_pred ccccc
Q 011766 86 HVHTS 90 (478)
Q Consensus 86 H~H~~ 90 (478)
|.|..
T Consensus 140 h~hgI 144 (180)
T d1e9yb1 140 AFFGV 144 (180)
T ss_dssp TTTTT
T ss_pred hhcCC
Confidence 99973
|
| >d4ubpc1 b.92.1.1 (C:1-131,C:435-483) alpha-Subunit of urease {Bacillus pasteurii [TaxId: 1474]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Bacillus pasteurii [TaxId: 1474]
Probab=98.64 E-value=6e-08 Score=75.34 Aligned_cols=69 Identities=16% Similarity=0.169 Sum_probs=54.6
Q ss_pred ccceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhh-------hhhhccCCCeEEeCCCCEEeeccccccccc
Q 011766 17 SSSTMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADI-------LQQFSQMADQIIDLQSQILLPGFVNTHVHT 89 (478)
Q Consensus 17 ~~~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~-------~~~~~~~~~~viD~~G~~v~PGfID~H~H~ 89 (478)
...+++|.|+.|++. .-+.++||.|+||||+.||+...- +..+-...+++|.++|+++.||-||.|+|+
T Consensus 65 ~~~d~vitn~~i~d~----~Gi~KadiGikdG~I~giGkaGNPd~mdgV~~~~vig~~Teviageg~I~TagvIdthvHF 140 (180)
T d4ubpc1 65 NVLDLLLTNALILDY----TGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTALVLWEPKFF 140 (180)
T ss_dssp TBCSEEEEEEEEEET----TEEEEEEEEEETTEEEEEECCBCTTTCTTCCTTCBCCTTCEEEECTTCEEEEEEEECGGGT
T ss_pred CcceEEEeeEEEecC----CCeEEeeeeeecCEEEEeeccCCccccCCCCCCeEEcCCceEEecCCceEEEEEEeehhhc
Confidence 457999999988853 234678999999999999975321 111224567899999999999999999998
|
| >d1a4ma_ c.1.9.1 (A:) Adenosine deaminase (ADA) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenosine/AMP deaminase domain: Adenosine deaminase (ADA) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.56 E-value=6.7e-07 Score=82.15 Aligned_cols=133 Identities=15% Similarity=0.122 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccC--ChhHHHHHHhcCCeEE
Q 011766 236 LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV--NHTEIGLLSRAGVKVS 313 (478)
Q Consensus 236 ~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~--~~~~~~~~~~~~~~~~ 313 (478)
...++++.+++.|+++.+|+.+..... ........+++ ..|+||..+ +++.++++++.++.+.
T Consensus 193 ~~~~~f~~ar~~gl~~t~HaGE~~~~~--------------~i~~ai~~l~~-~RIGHG~~l~~d~~l~~~~~~~~I~lE 257 (349)
T d1a4ma_ 193 GHVEAYEGAVKNGIHRTVHAGEVGSPE--------------VVREAVDILKT-ERVGHGYHTIEDEALYNRLLKENMHFE 257 (349)
T ss_dssp HHHHHHHHHHHHTCEEEEEESSSSCHH--------------HHHHHHHTSCC-SEEEECGGGGGSHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHcCCceeeccCCCCChH--------------HHHHHHHHhCC-cccCCceecccCHHHHHHhhhcCceEE
Confidence 356778899999999999999865322 11222222232 358999998 6789999999999999
Q ss_pred ECccchhhc-----cCCCcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHH
Q 011766 314 HCPASAMRM-----LGFAPIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRM 388 (478)
Q Consensus 314 ~~p~~~~~~-----~~~~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~ 388 (478)
+||.+|... ....|++.+++.|++|+++||.+...+ .++..+...+... .+++.++.. .
T Consensus 258 vCptSN~~~~~~~~~~~HP~~~~~~~gv~v~i~TDDp~~f~-t~Ls~Ey~~a~~~--------------~~l~~~~l~-~ 321 (349)
T d1a4ma_ 258 VCPWSSYLTGAWDPKTTHAVVRFKNDKANYSLNTDDPLIFK-STLDTDYQMTKKD--------------MGFTEEEFK-R 321 (349)
T ss_dssp ECHHHHHHSSSSCTTSCCHHHHHHHTTCCEEECCBCTTTTT-CCHHHHHHHHHHT--------------TTCCHHHHH-H
T ss_pred EcccccccccccCchhhHHHHHHHHCCCeEEEeCCCccccC-CCHHHHHHHHHHH--------------hCcCHHHHH-H
Confidence 999999765 235689999999999999999876543 3677776655432 258888844 5
Q ss_pred HhHHHHHHcCC
Q 011766 389 ATINGAKSVLW 399 (478)
Q Consensus 389 ~T~~pA~~lgl 399 (478)
+..|+-+...+
T Consensus 322 l~~nsi~~sf~ 332 (349)
T d1a4ma_ 322 LNINAAKSSFL 332 (349)
T ss_dssp HHHHHHHTSSC
T ss_pred HHHHHHHHhCC
Confidence 66677776655
|
| >d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.55 E-value=2e-09 Score=79.28 Aligned_cols=65 Identities=25% Similarity=0.199 Sum_probs=53.8
Q ss_pred CCHHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEE
Q 011766 380 LPAETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWV 453 (478)
Q Consensus 380 ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v 453 (478)
+.+++.+...|.++++.+.++++.++|++||.|||+|||.+. +..+.|......+..||++||+|
T Consensus 38 vG~~~~l~~~~~~aa~viDl~Grlv~i~~Gk~AD~~i~~~~~---------~~~l~Y~~g~~~~~~v~~~G~~v 102 (103)
T d2puza1 38 AGPESDLPDDLSTADETTDCGGRWITLEAGKSADFAIWDIER---------PAELVYRIGFNPLHARIFKGQKV 102 (103)
T ss_dssp EEETTSCCGGGSCCSEEEECTTCEEECCTTSBCCEEEECCSS---------TTHHHHCBSCCCEEEEEETTEEC
T ss_pred cChhhhcchhhhchHhhcCCCCCEEEeeccceeeEEEEcCCC---------HHHHHHhhcCCChhEEEECCEEc
Confidence 334455556677899999999999999999999999999852 34667777888999999999986
|
| >d1o12a2 c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.49 E-value=4.5e-07 Score=80.67 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCcc
Q 011766 379 ALPAETVLRMATINGAKSVLWDNDIG 404 (478)
Q Consensus 379 ~ls~~~al~~~T~~pA~~lgl~~~~G 404 (478)
|||++|||+++|.|||++|||++ +|
T Consensus 264 Gls~~eal~~aT~n~A~~lgl~d-rG 288 (288)
T d1o12a2 264 GCSITELAKVSSYNSCVELGLDD-RG 288 (288)
T ss_dssp CCCHHHHHHHHTHHHHHHTTCTT-SS
T ss_pred CCCHHHHHHHHHHHHHHHhCCCC-CC
Confidence 69999999999999999999975 46
|
| >d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.43 E-value=3e-07 Score=67.34 Aligned_cols=71 Identities=18% Similarity=0.188 Sum_probs=57.5
Q ss_pred eeEEEecEEEeeCCC---CceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeecccccccccch
Q 011766 20 TMILHNAVIVTMDKE---SRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHTSQ 91 (478)
Q Consensus 20 ~~~i~n~~I~t~d~~---~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~~~ 91 (478)
+.+++|++|.|++++ ...++++.|.|++|||+.||+..+.+... ..+++++|++|+++.+.--..+-++..
T Consensus 2 ~~l~~n~~iaTm~~~~~~~g~ie~aAl~v~~g~I~~vG~~~~l~~~~-~~aa~viDl~Grlv~i~~Gk~AD~~i~ 75 (103)
T d2puza1 2 TALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDL-STADETTDCGGRWITLEAGKSADFAIW 75 (103)
T ss_dssp EEEEEEEEEECCCTTSSTTCEEEEEEEEEETTEEEEEEETTSCCGGG-SCCSEEEECTTCEEECCTTSBCCEEEE
T ss_pred cEEEEcCEEEEcCCCCCcchHHHHHHHHhhCCCccccChhhhcchhh-hchHhhcCCCCCEEEeeccceeeEEEE
Confidence 678999999998664 34678999999999999999987665422 235689999999999988888877643
|
| >d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Dihydroorotase domain: Dihydroorotase species: Escherichia coli [TaxId: 562]
Probab=98.38 E-value=1.8e-06 Score=79.14 Aligned_cols=152 Identities=10% Similarity=0.007 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHcCCceeEeccCChhhhH---HHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCC-hhHHHHHHhcC
Q 011766 234 DRLLLETRDMAREFKTGIHMHVAEIPYENQ---VVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN-HTEIGLLSRAG 309 (478)
Q Consensus 234 ~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~-~~~~~~~~~~~ 309 (478)
...+....+..+..+..+..|......... ...... .....+......+.+. |..+++ .+.++.+++.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~eae~~----~~~~~~~l~~~~~~~~---Hi~HiSt~~~v~~ir~~~ 188 (343)
T d2eg6a1 116 VDAIMPVLERMEKIGMPLLVHGEVTHADIDIFDREARFI----ESVMEPLRQRLTALKV---VFEHITTKDAADYVRDGN 188 (343)
T ss_dssp GGGGHHHHHHHHHHTCCEEECCCCCCTTSCGGGHHHHHH----HHTHHHHHHHCTTCCE---EECSCCSHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHhCchhhhcCccccccccccchhhhhH----HHHHHHHHhhccCceE---EEEecchhHHHHHHHhcC
Confidence 334666677788888888888754221100 000000 0001111122223333 555554 56677776654
Q ss_pred --CeEEECccchhhc-------------cCCCcHH----------HHHHCCCcEEEcCCCCCCC-------------CCc
Q 011766 310 --VKVSHCPASAMRM-------------LGFAPIK----------EMLHADICVSLGTDGAPSN-------------NRM 351 (478)
Q Consensus 310 --~~~~~~p~~~~~~-------------~~~~~~~----------~~~~~gv~v~~gsD~~~~~-------------~~~ 351 (478)
+.+.+||.+.... .-.+|+| .+++-++.++++|||+|+. ...
T Consensus 189 ~~vt~EvtPHhL~L~~~d~~~~~~~~~~k~nPPlR~~~d~~~l~~~~~~g~i~d~iatDHaPh~~e~K~~~~~~~g~~g~ 268 (343)
T d2eg6a1 189 ERLAATITPQHLMFNRNHMLVGGVRPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCAGCFNA 268 (343)
T ss_dssp TTEEEEECHHHHHCCHHHHHTTSBCGGGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCCHHHHSSTTBCCCCCCT
T ss_pred CCcceeecCcHHHhhhhhhhcCCCccceeeeccccccchhhHHHHHHHcCCCeeeeecCCCCcccccccccccccccCCh
Confidence 6778999854210 1123443 2333457789999998762 011
Q ss_pred CHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCcccc
Q 011766 352 SIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIGSL 406 (478)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l 406 (478)
...-++....+.. .++++++++++|.|||+++||..++|.|
T Consensus 269 e~~l~l~l~~~~~--------------~~~L~~lv~~~S~nPaki~gL~~~kg~I 309 (343)
T d2eg6a1 269 PTALGSYATVFEE--------------MNALQHFEAFCSVNGPQFYGLPVNDTFI 309 (343)
T ss_dssp TTHHHHHHHHHHH--------------TTCGGGHHHHHHTHHHHHHTCCCCCSEE
T ss_pred HHHHHHHHHHHHh--------------cCCHHHHHHHHhHhHHHHhCCCCCCCeE
Confidence 1111121211111 2689999999999999999998777754
|
| >d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease, catalytic domain {Klebsiella aerogenes [TaxId: 28451]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Klebsiella aerogenes [TaxId: 28451]
Probab=98.33 E-value=3.8e-06 Score=73.03 Aligned_cols=165 Identities=16% Similarity=0.114 Sum_probs=91.1
Q ss_pred EeccccccCCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccC------
Q 011766 224 FGIRQIMNATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWV------ 297 (478)
Q Consensus 224 ~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~------ 297 (478)
+..|+.+..++..+...+..|.++++++.+|......... ....+.+.+ .|. .|..|.
T Consensus 87 lKiHEDwGatpa~id~~L~vad~~dvqv~iHtDtlNE~gf-----------vedT~~a~~---gRt--iH~~H~EGaGGG 150 (385)
T d1ejxc2 87 LKIHEDWGATPAAIDCALTVADEMDIQVALHSDTLNESGF-----------VEDTLAAIG---GRT--IHTFHTEGAGGG 150 (385)
T ss_dssp EEEEGGGCCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCC-----------HHHHHHHHT---TCC--EEESSTTSTTSS
T ss_pred ecCCcccccChHHHHHHHHhHhhcCceEEEeccccccccc-----------chhhHHHhC---CCc--eeeeecccCCCC
Confidence 4458888889999999999999999999999864321110 111122211 111 232221
Q ss_pred -ChhHHHHHHhcCCe-EEECccchh---------------------------------hccCCCcHHHHHHCCCcEEEcC
Q 011766 298 -NHTEIGLLSRAGVK-VSHCPASAM---------------------------------RMLGFAPIKEMLHADICVSLGT 342 (478)
Q Consensus 298 -~~~~~~~~~~~~~~-~~~~p~~~~---------------------------------~~~~~~~~~~~~~~gv~v~~gs 342 (478)
.|+.++.+...++- -++.|+.-+ |...+..=..|.+-|..-.++|
T Consensus 151 HAPDii~~~~~~nvlpsSTnPT~P~t~nt~~EhldMlmvcHhL~~~ipeDvafAesRiR~eTiaAEdvLhD~GaiSi~sS 230 (385)
T d1ejxc2 151 HAPDIITACAHPNILPSSTNPTLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSS 230 (385)
T ss_dssp STTTGGGGGGCTTEEEEEESTTSSCBTTHHHHHHHHHHHC----------CHHHHHHSCHHHHHHHHHHHHTTSSCEEEC
T ss_pred ccchhhHhhccCcccCCCCCCCCCCccCchHhhCCceeecccCCCCChhHHhhhhccccchhhhhHHHhhccCceeeecc
Confidence 13344444333332 233333110 0011122235778999999999
Q ss_pred CCCCCCCCcC-HHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCCCCcc
Q 011766 343 DGAPSNNRMS-IVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWDNDIG 404 (478)
Q Consensus 343 D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G 404 (478)
|+-..+.-.. ..+.++.+...+..+..+.......-..-...-+..+|.|||...|+++.+|
T Consensus 231 DsQaMGRvGEvi~RtwqtA~kmk~~rG~l~~d~~~~DN~RvkRYIAKYTINPAIahGIsh~VG 293 (385)
T d1ejxc2 231 DSQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHEVG 293 (385)
T ss_dssp CTTSSSCTTCHHHHHHHHHHHHHHHHCSCTTCCSSSCHHHHHHHHHHHTHHHHHHTTCTTTSS
T ss_pred cccccCcCCcchhhhHHHHHHHHHhhccCCCCCCCCcchHHHhhhhhhccChHHHcCccceec
Confidence 9876544333 3344555554443333222111111123466778899999999999998776
|
| >d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Probab=98.32 E-value=1.6e-07 Score=67.08 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=42.8
Q ss_pred HHHcCCCCCccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEE
Q 011766 394 AKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVM 454 (478)
Q Consensus 394 A~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~ 454 (478)
+....++.++|+|++||.|||+|||.+. +..+.|......+..||++|++|.
T Consensus 51 ~~~~d~~gr~~tlevGk~ADlviwd~~~---------~~~L~Y~~G~n~i~~vi~~G~~V~ 102 (103)
T d2q09a1 51 AHWQDMKGKLVTLRVGMLADFLVWNCGH---------PAELSYLIGVDQLVSRVVNGEETL 102 (103)
T ss_dssp TTSEECTTCEEECCTTSBCCEEEESSSC---------TTHHHHSCSCCCEEEEEETTEECC
T ss_pred chhhhcccceEEecCCCccCEEEEcCCC---------HHHhhhhcCCCCceEEEECCEEee
Confidence 3445677899999999999999999862 345677777889999999999863
|
| >d2ooda1 b.92.1.4 (A:3-72,A:398-467) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Bradyrhizobium japonicum [TaxId: 375]
Probab=98.23 E-value=1.3e-07 Score=72.73 Aligned_cols=74 Identities=19% Similarity=0.212 Sum_probs=54.5
Q ss_pred HHHHHHHHhHHHHHHcCCCCCccccccCccccEEEEcCCCCCCC---------------C---cCChhhhhhhccCCCCe
Q 011766 382 AETVLRMATINGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMV---------------P---VHDRITSLVYCMRTENV 443 (478)
Q Consensus 382 ~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~---------------~---~~d~~~~~~~~~~~~~v 443 (478)
..+.++.. .-.|+.+.+++++|.+++||.|||||+|.+..... . .++.+..++.......|
T Consensus 48 ~~~~l~~~-~pga~v~d~~d~lg~F~~GkEADfvVlD~~~tp~~~~r~~~~~~~~~~~~~~~~l~e~Lf~l~~lGDDR~I 126 (140)
T d2ooda1 48 PYEKIAAA-HPGVEITHIKDRIIVFEPGKEADFVALDPNGGQLAQPWHQSLIADGAGPRTVDEAASMLFAVMMVGDDRCV 126 (140)
T ss_dssp EHHHHHHH-STTCEEEEEEEEEEECCTTSBCCEEEECTTCSSTTHHHHHTTC--CCSCCSHHHHHHHHHHHHHHCCGGGE
T ss_pred CHHHHhhc-CCCceEEecCCceEeccCCCeecEEEECCCCChHHHhhhhhcccccccchhhhhHHHHHHHHhhccCCCce
Confidence 44445443 44679999999999999999999999998642211 0 11123346677788999
Q ss_pred eEEEEccEEEEEC
Q 011766 444 VSVMCNGQWVMKN 456 (478)
Q Consensus 444 ~~v~v~G~~v~~~ 456 (478)
..|||.|+.||+.
T Consensus 127 ~~t~V~G~~v~~r 139 (140)
T d2ooda1 127 DETWVMGKRLYKK 139 (140)
T ss_dssp EEEEETTEEEEEC
T ss_pred EEEEECCEEEeec
Confidence 9999999999985
|
| >d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YcfH species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=0.00014 Score=63.23 Aligned_cols=142 Identities=15% Similarity=0.164 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEEC
Q 011766 236 LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHC 315 (478)
Q Consensus 236 ~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~ 315 (478)
.+.+-+++|.++++++.+|+-..... ..+.+...... ....+.|+..-+.+.++++.+.|..+.+.
T Consensus 112 ~f~~ql~lA~~~~lPv~iH~r~a~~~-------------~~~il~~~~~~-~~~~v~H~FsG~~~~a~~~l~~g~~~s~~ 177 (265)
T d1yixa1 112 SFIHHIQIGRELNKPVIVHTRDARAD-------------TLAILREEKVT-DCGGVLHCFTEDRETAGKLLDLGFYISFS 177 (265)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESCHHH-------------HHHHHHHTTGG-GTCEEETTCCSCHHHHHHHHTTTCEEEEC
T ss_pred HHHHHHHHHHHhCCCcccchhhHHHH-------------HHHHHHhhccc-CcceEEEeecCChHHHHHHHHcCCeecCc
Confidence 35666789999999999999765432 12223322221 22347799988999999999999999988
Q ss_pred ccchhhccCCCcHHHHHHC-C-CcEEEcCCCCCCC--------CCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHH
Q 011766 316 PASAMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSN--------NRMSIVDEMYLASLINKGREVFANGTTDPAALPAETV 385 (478)
Q Consensus 316 p~~~~~~~~~~~~~~~~~~-g-v~v~~gsD~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 385 (478)
+...... ...+++++.. . -++.+-||+|... +...+...+ +..+..- .++|.++.
T Consensus 178 g~~~~~~--~~~l~~~v~~iPldrlLlETD~P~~~p~~~~~~~n~P~~i~~~--~~~iA~i-----------~~~~~~ev 242 (265)
T d1yixa1 178 GIVTFRN--AEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDV--AEYMAVL-----------KGVAVEEL 242 (265)
T ss_dssp GGGGSTT--CHHHHHHHHHSCGGGEEECCCBTSCCCTTCTTSCCCGGGHHHH--HHHHHHH-----------HTSCHHHH
T ss_pred cccccch--hHHHHHHHHhcchhceEeecCCcccCccccCCCCCCcHHHHHH--HHHHHHH-----------HCcCHHHH
Confidence 6543222 2233444432 2 2588899986321 111112111 1111110 15899999
Q ss_pred HHHHhHHHHHHcCCC-CCcccc
Q 011766 386 LRMATINGAKSVLWD-NDIGSL 406 (478)
Q Consensus 386 l~~~T~~pA~~lgl~-~~~G~l 406 (478)
.+..+.|.-+++|++ .++++|
T Consensus 243 ~~~~~~Na~~lf~l~~~~~~~~ 264 (265)
T d1yixa1 243 AQVTTDNFARLFHIDASRLQSI 264 (265)
T ss_dssp HHHHHHHHHHHTTCCGGGGCCC
T ss_pred HHHHHHHHHHHhCCCHHHhccc
Confidence 999999999999996 334444
|
| >d2uz9a1 b.92.1.4 (A:8-75,A:389-451) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=1.2e-06 Score=66.90 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=45.7
Q ss_pred CCCccccccCccccEEEEcCCCCC-----------CCCcCChhhhhhhccCCCCeeEEEEccEEEE
Q 011766 400 DNDIGSLEAGKKADMVVVDPFSWP-----------MVPVHDRITSLVYCMRTENVVSVMCNGQWVM 454 (478)
Q Consensus 400 ~~~~G~l~~G~~ADlvv~d~~~~~-----------~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~ 454 (478)
+++.|.+++||.||++++|.+... ..+.++++..+++.....+|..|||+|+.|+
T Consensus 63 ~~~~g~FevGkeaD~ivID~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~gddr~I~~v~V~G~~Vv 128 (131)
T d2uz9a1 63 HHEFFMFEVGKEFDAILINPKASDSPIDLFYGDFFGDISEAVIQKFLYLGDDRNIEEVYVGGKQVV 128 (131)
T ss_dssp TTCEEECCTTSBCCEEEECTTCTTCSCCCCTHHHHSSSTTHHHHHHHHHCCGGGEEEEEETTEEEE
T ss_pred hccccccccCccccEEEEECCCccchhhhhccccccCcHHHHHHHHhhcCCCCcEeEEEECCEEeC
Confidence 467999999999999999987432 1245567778899999999999999999885
|
| >d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.10 E-value=2e-07 Score=72.32 Aligned_cols=74 Identities=19% Similarity=0.330 Sum_probs=54.2
Q ss_pred HHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcC--------ChhhhhhhccCCCCeeEEEEccEEEEECCeeeccc
Q 011766 392 NGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVH--------DRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLM 463 (478)
Q Consensus 392 ~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~--------d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~ 463 (478)
++|+.+...++++.+.+|++|||+++|++.-+....+ .|+.... -...|.+||++|++||++|++++..
T Consensus 39 ~~a~vIDa~G~~v~~~~G~dAdl~i~Dp~~~~~i~~~~~~sk~~~tpf~G~~---~~G~v~~Ti~rG~~v~~~g~~~~~~ 115 (142)
T d1kcxa1 39 GGVKTIEANGRMVIIAVGSDADVVIWDPDKMKTITAKSHKSTVEYNIFEGME---CHGSPLVVISQGKIVFEDGNISVSK 115 (142)
T ss_dssp SSCEEEECTTCEEECCTTSBCCEEEEEEEEEEECCTTTCSSSSSCCTTTTCE---EEEEEEEEEETTEEEEETTEECCCT
T ss_pred ccceeechhhcceeecccccceEEEEeccceEEEcchhccccCCccCCcCCE---EEEEEEEEEECCEEEEECCEEeEcC
Confidence 5788999989999999999999999998732211111 2333221 1257999999999999999998665
Q ss_pred -HHHHH
Q 011766 464 -RGRLF 468 (478)
Q Consensus 464 -~~~~~ 468 (478)
.|+++
T Consensus 116 g~G~fl 121 (142)
T d1kcxa1 116 GMGRFI 121 (142)
T ss_dssp TCCCBC
T ss_pred CCCeEe
Confidence 45544
|
| >d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Probab=98.07 E-value=1.4e-07 Score=70.34 Aligned_cols=64 Identities=17% Similarity=0.193 Sum_probs=43.7
Q ss_pred hHHHHHHcCCCC--CccccccCccccEEEEcCCCCCCCCcC--------ChhhhhhhccCCCCeeEEEEccEEEEEC
Q 011766 390 TINGAKSVLWDN--DIGSLEAGKKADMVVVDPFSWPMVPVH--------DRITSLVYCMRTENVVSVMCNGQWVMKN 456 (478)
Q Consensus 390 T~~pA~~lgl~~--~~G~l~~G~~ADlvv~d~~~~~~~~~~--------d~~~~~~~~~~~~~v~~v~v~G~~v~~~ 456 (478)
+.+||+.+.... ..|.|++|++|||+|+|++..+....+ .|+.. ..-..+|.+||++|++||+|
T Consensus 39 ~~~~a~viD~~g~~~~~~l~~G~~ADl~i~Dp~~~~~v~~~~~~Sk~~nspf~g---~~l~G~v~~T~~~G~~v~~d 112 (112)
T d1xrta1 39 LVPEAEIIDAKGLIVCPTLKLGSPADITIFDPNKEWILNEETNLSKSRNTPLWG---KVLKGKVIYTIKDGKMVYKD 112 (112)
T ss_dssp CCSSEEEEECTTSEEEECCCTTSBCCEEEEEEEEEEECSTTTCCSSCCCCTTTT---CEEEEEEEEEEETTEEEEEC
T ss_pred CcccceEEehhcccccceeecccceEEEEecCCccEEECHHHccCcCCCceecC---CEEeeEEEEEEECCEEEEeC
Confidence 457888876543 258999999999999999732222111 23221 11235799999999999986
|
| >d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.06 E-value=1.9e-07 Score=73.13 Aligned_cols=75 Identities=20% Similarity=0.284 Sum_probs=54.9
Q ss_pred HHHHHHcCCCCCccccccCccccEEEEcCCCCCCCCcC--------ChhhhhhhccCCCCeeEEEEccEEEEECCeeecc
Q 011766 391 INGAKSVLWDNDIGSLEAGKKADMVVVDPFSWPMVPVH--------DRITSLVYCMRTENVVSVMCNGQWVMKNKKILLL 462 (478)
Q Consensus 391 ~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~--------d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~ 462 (478)
.++|+.+..+++++.|.+|++|||+++|++.-+....+ .|+.... -...+.+||++|++||++|+++..
T Consensus 39 ~~~~~iida~gk~v~i~~G~dad~~i~dp~~~~~i~~~~~~sk~~~spfeG~~---~~G~v~~TivrG~iV~~~g~~~~~ 115 (150)
T d2ftwa1 39 KEGIKVVDATDKLLLIDVGCDGDIVIWDPNQSKTISKDTHHHAVDFNIFEGIK---VTGIAVTTIVAGNIVWSDNKLSCV 115 (150)
T ss_dssp CSSCCEEECTTCEEECSTTSBCCEEEEEEEEEEECCTTTCCCSSSCCTTTTCE---EEEEEEEEEETTEEEEETTEECCC
T ss_pred CCccEEEecccceeeeecCccCceEEEecCceEEEeccccccccccccCcCCE---EEEEEeEEEECCEEEEECCEEeec
Confidence 37899999999999999999999999998732211111 2333221 125799999999999999999865
Q ss_pred c-HHHHH
Q 011766 463 M-RGRLF 468 (478)
Q Consensus 463 ~-~~~~~ 468 (478)
. .|+++
T Consensus 116 ~g~Grfl 122 (150)
T d2ftwa1 116 KGSGRFV 122 (150)
T ss_dssp TTCCCBC
T ss_pred CCCceEc
Confidence 5 56544
|
| >d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YjjV species: Escherichia coli [TaxId: 562]
Probab=98.04 E-value=0.00017 Score=62.48 Aligned_cols=135 Identities=12% Similarity=0.076 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEE
Q 011766 235 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 314 (478)
Q Consensus 235 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~ 314 (478)
+...+.+++|.++++++.+|+-..... ..+.+...... +..+.|+..-+.+.++++.+.|..+.+
T Consensus 114 ~~f~~ql~lA~~~~~Pv~IH~r~a~~~-------------~~~~l~~~~~~--~~~i~H~f~g~~~~~~~~l~~g~~~si 178 (259)
T d1zzma1 114 WLLDEQLKLAKRYDLPVILHSRRTHDK-------------LAMHLKRHDLP--RTGVVHGFSGSLQQAERFVQLGYKIGV 178 (259)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEESCHHH-------------HHHHHHHHCCT--TCEEETTCCSCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHH-------------HHHhhhccccc--cceeeecccCCHHHHHHHHHcCCCccc
Confidence 356677899999999999999654432 22333333222 235689998899999999999999998
Q ss_pred CccchhhccCCCcHHHHHHC-C-CcEEEcCCCCCCCC--------CcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHH
Q 011766 315 CPASAMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSNN--------RMSIVDEMYLASLINKGREVFANGTTDPAALPAET 384 (478)
Q Consensus 315 ~p~~~~~~~~~~~~~~~~~~-g-v~v~~gsD~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~ 384 (478)
.+..... ....++++++. . -++.+-||+|.... ...+.... ...+..- .++|.++
T Consensus 179 ~~~~~~~--~~~~~~~~v~~iPldriL~ETD~P~~~~~~~~~~~~~P~~~~~~--~~~iA~i-----------~~~~~~e 243 (259)
T d1zzma1 179 GGTITYP--RASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARV--FAVLCEL-----------RREPADE 243 (259)
T ss_dssp CGGGGCT--TTCSHHHHHHHSCGGGEEECCCBTSSCCTTCTTSCCCGGGHHHH--HHHHHHH-----------CSSCHHH
T ss_pred ccccccc--chHHHHHHHHhhccceEEEecCCCCcCCCcCCCCCCchHHHHHH--HHHHHHH-----------hCCCHHH
Confidence 8753321 22344555433 2 26889999863210 01111111 1111110 1589999
Q ss_pred HHHHHhHHHHHHcCC
Q 011766 385 VLRMATINGAKSVLW 399 (478)
Q Consensus 385 al~~~T~~pA~~lgl 399 (478)
..+..+.|.-+++++
T Consensus 244 v~~~~~~N~~rlf~l 258 (259)
T d1zzma1 244 IAQALLNNTYTLFNV 258 (259)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999999987
|
| >d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Deoxyribonuclease TatD (MttC) species: Escherichia coli [TaxId: 562]
Probab=97.86 E-value=0.00027 Score=61.14 Aligned_cols=136 Identities=12% Similarity=-0.006 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEEC
Q 011766 236 LLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSHC 315 (478)
Q Consensus 236 ~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~~ 315 (478)
.+.+-+++|.++++|+.+|+-....+ ..+.+..... ...-.+.|+..-+.+.++++.+.|..+.+.
T Consensus 109 ~f~~ql~lA~~~~lPviiH~r~a~~~-------------~~~il~~~~~-~~~~~v~H~f~g~~~~~~~~~~~g~~~s~~ 174 (260)
T d1xwya1 109 AFVAQLRIAADLNMPVFMHCRDAHER-------------FMTLLEPWLD-KLPGAVLHCFTGTREEMQACVAHGIYIGIT 174 (260)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESCHHH-------------HHHHHGGGGG-GSSCEEECSCCCCHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHhcCCceEeeeccchhH-------------HHHHHHHhhc-cCcccchhhhhccHHHHHHhhhhccccccC
Confidence 45566799999999999999764332 2233333221 112346899998999999999999999988
Q ss_pred ccchhhccCCCcHHHHHHC-C-CcEEEcCCCCCCCCC------------cCHHHHHHHHHHHhcccccccCCCCCCCCCC
Q 011766 316 PASAMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSNNR------------MSIVDEMYLASLINKGREVFANGTTDPAALP 381 (478)
Q Consensus 316 p~~~~~~~~~~~~~~~~~~-g-v~v~~gsD~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 381 (478)
+...... ....+++++.. . -++.+=||+|..... ....... +..+... .|++
T Consensus 175 g~~~~~~-~~~~~~~~~~~iPldrlllETD~P~~~p~~~~~~~~~~~NeP~~l~~v--~~~lA~~-----------~g~~ 240 (260)
T d1xwya1 175 GWVCDER-RGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSSRRNEPAHLPHI--LQRIAHW-----------RGED 240 (260)
T ss_dssp GGGGCTT-TSHHHHHHGGGSCGGGEEECCCTTSCCCTTCTTCCCSSCCCGGGHHHH--HHHHHHH-----------HTCC
T ss_pred ccccchh-hHHHHHHHHHhhhhhheeeecCCCCCCCccccccccCCCCChHHHHHH--HHHHHHH-----------hCcC
Confidence 6543221 12234444433 2 268888998642110 1112111 1111111 1589
Q ss_pred HHHHHHHHhHHHHHHcCC
Q 011766 382 AETVLRMATINGAKSVLW 399 (478)
Q Consensus 382 ~~~al~~~T~~pA~~lgl 399 (478)
.++..+..+.|.-+++|+
T Consensus 241 ~~ev~~~~~~N~~~~f~l 258 (260)
T d1xwya1 241 AAWLAATTDANVKTLFGI 258 (260)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 999999999999999998
|
| >d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Hypothetical protein TM0667 species: Thermotoga maritima [TaxId: 2336]
Probab=97.74 E-value=0.0012 Score=56.83 Aligned_cols=135 Identities=14% Similarity=0.122 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCChhHHHHHHhcCCeEEE
Q 011766 235 RLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVNHTEIGLLSRAGVKVSH 314 (478)
Q Consensus 235 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~~~~~~~~~~~~~~~~~ 314 (478)
+.+.+-+++|.++++++.+|+-..... ..+.+....... .-.+.|+..-+.+.++++.+.|..+.+
T Consensus 112 ~vF~~ql~lA~~~~lPviiH~r~a~~~-------------~~~il~~~~~~~-~~~i~H~fsG~~~~~~~~l~~g~~is~ 177 (260)
T d1j6oa_ 112 RVFVEQIELAGKLNLPLVVHIRDAYSE-------------AYEILRTESLPE-KRGVIHAFSSDYEWAKKFIDLGFLLGI 177 (260)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESCHHH-------------HHHHHHHSCCCS-SCEEETTCCSCHHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHhcCcceEEeeccchHH-------------HHHHHHhhcCCC-CCeeeeccccCHHHHHHHHhCCCceee
Confidence 346777899999999999999764432 233444433322 235679999999999999999999998
Q ss_pred CccchhhccCCCcHHHHHHC-C-CcEEEcCCCCCCC--------CCcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHH
Q 011766 315 CPASAMRMLGFAPIKEMLHA-D-ICVSLGTDGAPSN--------NRMSIVDEMYLASLINKGREVFANGTTDPAALPAET 384 (478)
Q Consensus 315 ~p~~~~~~~~~~~~~~~~~~-g-v~v~~gsD~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~ 384 (478)
++...... ...+++++.. . -.+.+=||++... +...+...+. ..+.+- .++|.++
T Consensus 178 ~g~~~~~~--~~~~~~~v~~iPldrlllETD~P~l~p~~~~~~~n~P~~l~~v~--~~iA~~-----------~~~~~~e 242 (260)
T d1j6oa_ 178 GGPVTYPK--NEALREVVKRVGLEYIVLETDCPFLPPQPFRGKRNEPKYLKYVV--ETISQV-----------LGVPEAK 242 (260)
T ss_dssp CGGGGCTT--CHHHHHHHHHHCGGGEEECCCBTSCCCGGGTTSCCCGGGHHHHH--HHHHHH-----------HTSCHHH
T ss_pred ccccccch--HHHHHHHHHhcccceEEEecCCCCCCCcccCCCCCChHHHHHHH--HHHHHH-----------hCcCHHH
Confidence 86543221 1122333322 1 2578889986421 1111222211 111110 1599999
Q ss_pred HHHHHhHHHHHHcC
Q 011766 385 VLRMATINGAKSVL 398 (478)
Q Consensus 385 al~~~T~~pA~~lg 398 (478)
..+..+.|.-++++
T Consensus 243 v~~~~~~N~~rlF~ 256 (260)
T d1j6oa_ 243 VDEATTENARRIFL 256 (260)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998875
|
| >d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Probab=97.68 E-value=3e-05 Score=55.16 Aligned_cols=60 Identities=15% Similarity=0.217 Sum_probs=46.8
Q ss_pred eeEEEecEEEeeCCC---CceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEe--ecc
Q 011766 20 TMILHNAVIVTMDKE---SRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILL--PGF 82 (478)
Q Consensus 20 ~~~i~n~~I~t~d~~---~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~--PGf 82 (478)
+.+.+|+++-|++++ ...+++++|.|++|||..||+..+.+.. .+..+.|++|+++. +|.
T Consensus 3 d~lw~n~~lATm~~~~~~yG~ie~~ai~v~~g~I~~vgp~~~lpa~---~~~~~~d~~gr~~tlevGk 67 (103)
T d2q09a1 3 ERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKGP---YPAHWQDMKGKLVTLRVGM 67 (103)
T ss_dssp SEEEEEEEEBCCCTTSSTTCBCSSEEEEEETTEEEEEEEGGGCC-----CCTTSEECTTCEEECCTTS
T ss_pred ceeeecCEEEEecCCCCCcceeccceEEEeCCeEEEEEehhhCCcc---ccchhhhcccceEEecCCC
Confidence 568899999998654 5678999999999999999998876542 24567899999654 554
|
| >d1o12a1 b.92.1.5 (A:1-43,A:332-364) N-acetylglucosamine-6-phosphate deacetylase, NagA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Thermotoga maritima [TaxId: 2336]
Probab=97.67 E-value=2.5e-05 Score=49.29 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=39.4
Q ss_pred eEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeeccccccccc
Q 011766 21 MILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFVNTHVHT 89 (478)
Q Consensus 21 ~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfID~H~H~ 89 (478)
|+|.+..|+++ - .-...|+|.+++|+|..|-+.+- . -..++||||+|.|.|-
T Consensus 1 M~iE~VLIVDP--i-dGEyTGdvEf~e~kI~~I~k~ec---------t-----p~~ilMP~f~dg~~a~ 52 (76)
T d1o12a1 1 MIVEKVLIVDP--I-DGEFTGDVEIEEGKIVKVEKREC---------I-----PRGVLMPRIAEGTRAD 52 (76)
T ss_dssp CEEEEEEEEET--T-TEEEEEEEEEETTEEEEEEECCS---------C-----CSSEEEECCSTTSBCC
T ss_pred CceeeEEEEcC--C-CCcEeeeEEecCcEEEEEEEecc---------C-----CCeEEcccccCCcccc
Confidence 46888889965 2 22367899999999999976431 1 1269999999999985
|
| >d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Probab=97.66 E-value=1.8e-05 Score=60.00 Aligned_cols=62 Identities=21% Similarity=0.257 Sum_probs=42.5
Q ss_pred cccccCccccEEEEcCCCCCCCCcC--------ChhhhhhhccCCCCeeEEEEccEEEEECCeeeccc-HHHHH
Q 011766 404 GSLEAGKKADMVVVDPFSWPMVPVH--------DRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLM-RGRLF 468 (478)
Q Consensus 404 G~l~~G~~ADlvv~d~~~~~~~~~~--------d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~-~~~~~ 468 (478)
..|++|.+|||+++|++..+....+ .|+... .-...|..||++|++||++|+++... .|+++
T Consensus 54 P~~~vG~DAD~~l~Dp~~~~~v~~~~~~sk~~~tpf~G~---~~~G~v~~Ti~rG~~v~~~ge~~~~~g~G~~i 124 (126)
T d1gkra1 54 PTLQVGSDADLLILDLDIDTKVDASQFRSLHKYSPFDGM---PVTGAPVLTMVRGTVVAEKGEVLVEQGFGQFV 124 (126)
T ss_dssp ESCCTTSBCCEEEEESCCCEECCGGGCSSSCCCCTTTTC---EECCEEEEEEETTEEEEETTEECSCTTCCCBC
T ss_pred cceeecccchhheeccccceeccHHHHHhhhcccccCCc---EEEeEEEEEEECCEEEEECCEEEecCCCCeEc
Confidence 3499999999999999753322211 122211 12357999999999999999998654 45543
|
| >d2icsa1 b.92.1.8 (A:4-54,A:322-371) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Adenine deaminase domain: Putative adenine deaminase EF0837 species: Enterococcus faecalis [TaxId: 1351]
Probab=96.62 E-value=0.00096 Score=46.99 Aligned_cols=46 Identities=15% Similarity=0.263 Sum_probs=36.3
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCE
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQI 77 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~ 77 (478)
+|++||||+.++ + +.+ +|.|.+|||++||...+ ..+.+++|++|+.
T Consensus 2 ~d~~i~~~~~~~--g--~~~---diai~~~ki~a~~~~~~------~~a~~~~~L~~~~ 47 (101)
T d2icsa1 2 YDLLIKNGQTVN--G--MPV---EIAIKEKKIAAVAATIS------GSAKETIHLEPGT 47 (101)
T ss_dssp EEEEEEEEECTT--S--CEE---EEEEETTEEEEEESCCC------CCEEEEEECCTTC
T ss_pred ccEEEEcceecC--C--CeE---EEEeccCeeeeeccccc------ccchheEecCCce
Confidence 689999999994 2 333 99999999999997543 2466899999863
|
| >d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.13 E-value=0.00041 Score=52.44 Aligned_cols=60 Identities=25% Similarity=0.489 Sum_probs=39.7
Q ss_pred cccCccccEEEEcCCCCCCCCcC--------ChhhhhhhccCCCCeeEEEEccEEEEECCeeeccc-HHHHH
Q 011766 406 LEAGKKADMVVVDPFSWPMVPVH--------DRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLM-RGRLF 468 (478)
Q Consensus 406 l~~G~~ADlvv~d~~~~~~~~~~--------d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~-~~~~~ 468 (478)
+.+|.+||++++|++.-.....+ +|+... .-...|.+||++|++||++++++..+ .|+++
T Consensus 53 ~~v~~~~~~~~~dp~~~~~i~~~~~~s~~~~tpf~G~---~~~g~v~~Ti~rG~~V~~dg~~~~~~G~G~fv 121 (128)
T d1k1da1 53 IVVGSDADLVIFDPNIERVISAETHHMAVDYNAFEGM---KVTGEPVSVLCRGEFVVRDKQFVGKPGYGQYL 121 (128)
T ss_dssp CSTTSBCCEEEEEEEEEEECCTTTCCSSSSCCTTTTC---EEEEEEEEEEETTEEEEETTEECCCTTCSCBC
T ss_pred eecccccceEEeeccccEEEeccccccccceeeecCc---EEEEEEEEEEECCEEEEECCEEEecCCCCeEe
Confidence 46789999999997632222111 222211 11245899999999999999998655 56654
|
| >d1ra0a1 b.92.1.2 (A:4-55,A:376-426) Cytosine deaminase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Cytosine deaminase domain: Cytosine deaminase species: Escherichia coli [TaxId: 562]
Probab=96.13 E-value=0.0021 Score=45.32 Aligned_cols=52 Identities=15% Similarity=0.361 Sum_probs=38.0
Q ss_pred EEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeeccc
Q 011766 22 ILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFV 83 (478)
Q Consensus 22 ~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfI 83 (478)
.|+|+++-. .+ -+. +|.|+||+|.+|.+..+.. ......+|++|..++|=+|
T Consensus 4 ~I~NarL~g--r~--GL~--~I~I~~G~i~~I~pq~~~~----~~~~d~lDa~GgL~~p~~i 55 (103)
T d1ra0a1 4 TIINARLPG--EE--GLW--QIHLQDGKISAIDAQSGVM----PITENSLDAEQGLVIPLII 55 (103)
T ss_dssp EEEEEBCTT--CC--SEE--EEEEETTEEEEEEEESSCC----CCCTTEEECTTCEEESEEE
T ss_pred eEEEEEeCC--CC--cEE--EEEecCCEEeeeecCCccc----cCCCcceeccCCcccCcEE
Confidence 588888873 22 234 9999999999999764321 1245789999999999544
|
| >d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Probab=96.10 E-value=0.0005 Score=51.35 Aligned_cols=62 Identities=19% Similarity=0.219 Sum_probs=39.5
Q ss_pred ccccCccccEEEEcCCCCCCCCcCChhhh-----hhhccCCCCeeEEEEccEEEEECCeeeccc-HHHHH
Q 011766 405 SLEAGKKADMVVVDPFSWPMVPVHDRITS-----LVYCMRTENVVSVMCNGQWVMKNKKILLLM-RGRLF 468 (478)
Q Consensus 405 ~l~~G~~ADlvv~d~~~~~~~~~~d~~~~-----~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~-~~~~~ 468 (478)
.+-|| ||+++||.+.....+.++.++. +....-...+..|+++|++|+++|++++.+ .|+++
T Consensus 49 ~v~~g--~d~~~~d~~~~~tis~~~~~s~~~~tpfeG~~~~G~v~~ti~rG~~v~~~g~~~~~~g~G~~l 116 (123)
T d1gkpa1 49 YVFPG--ADLVVYDPQYRGTISVKTQHVNNDYNGFEGFEIDGRPSVVTVRGKVAVRDGQFVGEKGWGKLL 116 (123)
T ss_dssp EEEEC--CCEEEEETTCCEECCGGGCCSSSSCCTTTTCEESCEEEEEEETTEEEEETTEECCCTTCCCBC
T ss_pred eEecC--cceEEEecccccccchhhhhcccccccccccEEeeEEEEEEECCEEEEECCEEEecCCCCeEe
Confidence 35677 6999999874332222222211 111112367999999999999999998766 56544
|
| >d2icsa1 b.92.1.8 (A:4-54,A:322-371) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Adenine deaminase domain: Putative adenine deaminase EF0837 species: Enterococcus faecalis [TaxId: 1351]
Probab=96.09 E-value=0.00017 Score=50.90 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=40.7
Q ss_pred hHHHHHHcCCCCC---ccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEEC
Q 011766 390 TINGAKSVLWDND---IGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKN 456 (478)
Q Consensus 390 T~~pA~~lgl~~~---~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~ 456 (478)
|..+++.+.|.+. .|+|++|+.||+.||+-..-. ..+.|-...-+..-+...+..++++|+ +|++
T Consensus 34 ~~~a~~~~~L~~~~y~sGtL~vG~~ADiTIf~l~~g~-~~~~Ds~G~~~~g~~~L~P~~tI~~G~-vyd~ 101 (101)
T d2icsa1 34 SGSAKETIHLEPGTYVSATLEIGKDADLTIFTIQAEE-KTLTDSNGLTRVAKEQIRPIKTIIGGQ-IYDN 101 (101)
T ss_dssp CCCEEEEEECCTTCEEEESCCTTSBCCEEEEEEEEEE-EEEECTTSCEEEEEEEEEEEEEEETTE-EEEC
T ss_pred cccchheEecCCceeeeeEecCCCeeeEEEEEEecCc-eEEEeCCCCEEEeeEEEeEEEEEECCE-EecC
Confidence 4478888888653 699999999999999864100 011121111111222356899999999 6653
|
| >d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Probab=96.07 E-value=0.00037 Score=52.48 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=41.2
Q ss_pred cccCccccEEEEcCCCCCCCCcC--------ChhhhhhhccCCCCeeEEEEccEEEEECCeeeccc-HHHHHH
Q 011766 406 LEAGKKADMVVVDPFSWPMVPVH--------DRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLM-RGRLFQ 469 (478)
Q Consensus 406 l~~G~~ADlvv~d~~~~~~~~~~--------d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~-~~~~~~ 469 (478)
+.+|..|||+++|++.-.....+ .|+..+. -...|.+||++|++||++|++.+.+ .|++++
T Consensus 52 g~i~~~~~~~i~dP~~~~tIt~~~~~s~~~~tpyeG~~---~~G~~~~Ti~rG~~V~~~g~~~~~~g~G~~l~ 121 (127)
T d1nfga1 52 IAVGSDADIVLWDPEAEMVIEQTAMHNAMDYSSYEGHK---VKGVPKTVLLRGKVIVDEGSYVGEPTDGKFLK 121 (127)
T ss_dssp CSTTSBCCEEEEEEEEEEECCGGGSCSSCSCCTTTTCE---EEEEEEEEEETTEEEEETTEECCCTTSCCBCC
T ss_pred ecccccccceeeccccceEEehHHhccccCcCCCcCCE---EeeEEEEEEECCEEEEECCEEeecCCCCeEcc
Confidence 47788999999998632221111 2222211 1257999999999999999998766 566553
|
| >d1o12a1 b.92.1.5 (A:1-43,A:332-364) N-acetylglucosamine-6-phosphate deacetylase, NagA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Thermotoga maritima [TaxId: 2336]
Probab=95.88 E-value=0.0078 Score=37.79 Aligned_cols=32 Identities=31% Similarity=0.521 Sum_probs=29.0
Q ss_pred ccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEEEEEC
Q 011766 405 SLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQWVMKN 456 (478)
Q Consensus 405 ~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~v~~~ 456 (478)
.+..|+.||||++|.+ .+|.+++..|.+||+.
T Consensus 44 ~f~dg~~a~~Vlld~~--------------------l~v~~tv~~g~~v~~~ 75 (76)
T d1o12a1 44 RIAEGTRADLVLLDED--------------------LNVVMTIKEGEVVFRS 75 (76)
T ss_dssp CCSTTSBCCEEEECTT--------------------CCEEEEEETTEEEEEC
T ss_pred cccCCccccEEEEcCC--------------------ceEEEEEeeccEEEec
Confidence 4789999999999997 6999999999999874
|
| >d2a3la1 c.1.9.1 (A:212-839) AMP deaminase (AMPD), catalytic domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenosine/AMP deaminase domain: AMP deaminase (AMPD), catalytic domain species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.80 E-value=0.0099 Score=56.74 Aligned_cols=123 Identities=20% Similarity=0.143 Sum_probs=83.1
Q ss_pred HcCCceeEeccCChhhhHHHhhhcCCCCchHHHHhhhCCCCCCeeeeeeccCC--hhHHHHHHhcCCeEEECccchhhc-
Q 011766 246 EFKTGIHMHVAEIPYENQVVMDTRKVDHGTVTFLDKIEFLQNNLLSAHTVWVN--HTEIGLLSRAGVKVSHCPASAMRM- 322 (478)
Q Consensus 246 ~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~h~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~- 322 (478)
..++.+..|+.+......... .++.. ..|.||..+. +....++...++.+.+||.+|..+
T Consensus 440 ~~~~~lrpH~GE~~~~~~l~~----------alL~a-------drIgHGv~l~~~p~L~~l~~~~qI~le~cPlSN~~l~ 502 (628)
T d2a3la1 440 MTTITLRPHSGEAGDIDHLAA----------TFLTC-------HSIAHGINLRKSPVLQYLYYLAQIGLAMSPLSNNSLF 502 (628)
T ss_dssp CCCCEECCCCSSSSCTHHHHH----------HHHHC-------SSCSCCGGGGGCHHHHHHHHHHTCCEEECHHHHTTTT
T ss_pred CCCeeeecccCCCCCHHHHHH----------HHhcc-------ccccceeEccCCHHHHHHHHhcCceEEECCCchhhcc
Confidence 346888999988655432211 11111 2367888874 556788899999999999998755
Q ss_pred --cCCCcHHHHHHCCCcEEEcCCCCCCC-CCcC-HHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcC
Q 011766 323 --LGFAPIKEMLHADICVSLGTDGAPSN-NRMS-IVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVL 398 (478)
Q Consensus 323 --~~~~~~~~~~~~gv~v~~gsD~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lg 398 (478)
-...|+..+++.|++|+++||.+... .+.. +.++...+...- +++..+...++ .|....-+
T Consensus 503 ~~~~~hP~~~~~~~Gl~VsLsTDDPl~f~~t~epL~eEY~~aa~~~--------------~Ls~~dl~elA-rNSV~~S~ 567 (628)
T d2a3la1 503 LDYHRNPFPVFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAASVW--------------KLSACDLCEIA-RNSVYQSG 567 (628)
T ss_dssp CCSTTCSHHHHHHTTCCEEECCBCHHHHCCSSSHHHHHHHHHHHHH--------------TCCHHHHHHHH-HHHHHHSC
T ss_pred cChhhCcHHHHHHCCCeEEEcCCCccccCCCcchHHHHHHHHHHHh--------------CCCHHHHHHHH-HHHHHHhC
Confidence 23569999999999999999986432 1222 445554444332 48888877654 57777777
Q ss_pred CC
Q 011766 399 WD 400 (478)
Q Consensus 399 l~ 400 (478)
.+
T Consensus 568 f~ 569 (628)
T d2a3la1 568 FS 569 (628)
T ss_dssp CC
T ss_pred CC
Confidence 65
|
| >d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Probab=95.21 E-value=0.0015 Score=49.15 Aligned_cols=73 Identities=23% Similarity=0.393 Sum_probs=45.7
Q ss_pred HHHHcCCCCC-ccccccCccccEEEEcCCCCCCCCcC--------ChhhhhhhccCCCCeeEEEEccEEEEECCeeeccc
Q 011766 393 GAKSVLWDND-IGSLEAGKKADMVVVDPFSWPMVPVH--------DRITSLVYCMRTENVVSVMCNGQWVMKNKKILLLM 463 (478)
Q Consensus 393 pA~~lgl~~~-~G~l~~G~~ADlvv~d~~~~~~~~~~--------d~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~ 463 (478)
+++.+...+. +--+.+|..|||+++|++.-...... .|+..+. -...+..|+++|+.++++|+++..+
T Consensus 38 ~~~viDa~g~~v~Pg~i~~~~~~~i~dp~~~~tI~~~~~~s~~~~tpfeG~~---~~G~v~~Ti~rG~~v~~~g~~~~~~ 114 (127)
T d1ynya1 38 GAEEIDATGCYVIPIAVGSDADIVIFDPHVKRTLSVETHHMNVDYNPFEGME---VYGEVVSVLSRGSFVVRDKQFVGQA 114 (127)
T ss_dssp CCEEEECTTSEEEECSTTSBCCEEEEEEEEEEEECTTTCCSSSSCCTTTTEE---EEEEEEEEEETTEEEEETTEECCCT
T ss_pred CCEEEEhhhceeecccccccchhhhhccccceEEeehhhhhccCcCCcCCCE---EeeEEEEEEECCEEEEECCEEeecC
Confidence 4455533221 22467799999999998632211111 2333221 1247999999999999999998766
Q ss_pred -HHHHH
Q 011766 464 -RGRLF 468 (478)
Q Consensus 464 -~~~~~ 468 (478)
.|+++
T Consensus 115 g~G~fi 120 (127)
T d1ynya1 115 GSGQYI 120 (127)
T ss_dssp TCCCBC
T ss_pred CCceEe
Confidence 56554
|
| >d2ffia1 c.1.9.15 (A:10-280) Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 species: Pseudomonas putida [TaxId: 303]
Probab=94.38 E-value=0.29 Score=40.81 Aligned_cols=58 Identities=7% Similarity=-0.007 Sum_probs=35.5
Q ss_pred HHHHHHC-C-CcEEEcCCCCCCCC--CcCHHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 011766 328 IKEMLHA-D-ICVSLGTDGAPSNN--RMSIVDEMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWD 400 (478)
Q Consensus 328 ~~~~~~~-g-v~v~~gsD~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~ 400 (478)
++.+++. | -++.+|||.+.... ..+....+...... ++|.++.=+....|++|++|++
T Consensus 210 l~~~i~~~g~dRilfGSD~P~~~~~~~~~~~~~~~~~~~~---------------~l~~~~~~~il~~NA~rlfg~d 271 (271)
T d2ffia1 210 LCALEAHYGAERLMWGSDWPHTQHESEVSFGSAVEQFEAL---------------GCSAQLRQALLLDTARALFGFE 271 (271)
T ss_dssp HHHHHHHTCGGGEEEECCTTCTTCTTTCCHHHHHHHHHHH---------------CCCHHHHHHHHTHHHHHHTTCC
T ss_pred HHHHHHHhCCCcEEEeCCCCCCcccCCCCHHHHHHHHHhc---------------CCCHHHHHHHHhHHHHHHhCcC
Confidence 3444443 3 57999999864322 12233322221111 4888888888999999999983
|
| >d2dvta1 c.1.9.15 (A:1-325) Thermophilic reversible gamma-resorcylate decarboxylase {Rhizobium sp. MTP-10005 [TaxId: 267998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Thermophilic reversible gamma-resorcylate decarboxylase species: Rhizobium sp. MTP-10005 [TaxId: 267998]
Probab=93.80 E-value=0.74 Score=40.04 Aligned_cols=148 Identities=9% Similarity=0.008 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHHcCCceeEeccCChhhhHHHhhhcCCCCc-----hH------------HHHhhhCCCCCCeeeeee
Q 011766 232 ATDRLLLETRDMAREFKTGIHMHVAEIPYENQVVMDTRKVDHG-----TV------------TFLDKIEFLQNNLLSAHT 294 (478)
Q Consensus 232 ~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~-----~~------------~~l~~~~~~~~~~~i~h~ 294 (478)
...+.+..+.+.|.++|++|.+|...............+.... .. .++.. ..+-+.++.|+
T Consensus 142 ~~d~~~~pi~~~~~e~~lpv~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~r--~P~Lk~v~~H~ 219 (325)
T d2dvta1 142 YDLPQYRPFWGEVEKLDVPFYLHPRNPLPQDSRIYDGHPWLLGPTWAFAQETAVHALRLMASGLFDE--HPRLNIILGHM 219 (325)
T ss_dssp TTSGGGHHHHHHHHHHTCCEEEECCCCCGGGCGGGTTCGGGSGGGTHHHHHHHHHHHHHHHTTHHHH--CTTCCEEESGG
T ss_pred ccCcccchHHHHHhhCCceEEEecCCCCCcccccccccccccccccccchhhHHHhHHHHhcchhhh--ccccceeeecc
Confidence 3445677889999999999999986533221111000000000 00 01111 23346788897
Q ss_pred ccCChhHHHHHHhcCCeEEECccc------------hhhc--c---CCCcHHHHHH-CC-CcEEEcCCCCCCCCCcCHHH
Q 011766 295 VWVNHTEIGLLSRAGVKVSHCPAS------------AMRM--L---GFAPIKEMLH-AD-ICVSLGTDGAPSNNRMSIVD 355 (478)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~p~~------------~~~~--~---~~~~~~~~~~-~g-v~v~~gsD~~~~~~~~~~~~ 355 (478)
...-+..+.++..........+.. +... . ....+..+++ .| -++.+|||.+.. ....
T Consensus 220 gg~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~drilfGSD~P~~----~~~~ 295 (325)
T d2dvta1 220 GEGLPYMMWRIDHRNAWVKLPPRYPAKRRFMDYFNENFHITTSGNFRTQTLIDAILEIGADRILFSTDWPFE----NIDH 295 (325)
T ss_dssp GTTHHHHHHHHHHTTTTCCSCCSSSCSSCHHHHHHHHEEEECTTCCCHHHHHHHHTTTCGGGEECCCCTTTS----CHHH
T ss_pred ccccchHHHHHHHhhhhhccccccccccchHHHhhccccccccCCcCHHHHHHHHHHhCCCeEEEeCCCCCC----ChHh
Confidence 654455555554432222111110 0000 0 1122334443 34 379999998632 2222
Q ss_pred HHHHHHHHhcccccccCCCCCCCCCCHHHHHHHHhHHHHHHcCCC
Q 011766 356 EMYLASLINKGREVFANGTTDPAALPAETVLRMATINGAKSVLWD 400 (478)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~ 400 (478)
.+... .. .++|.++.=+..-.|+++++||+
T Consensus 296 ~~~~~---~~------------~~l~~~~~~~Il~~NA~rl~~Ld 325 (325)
T d2dvta1 296 ASDWF---NA------------TSIAEADRVKIGRTNARRLFKLD 325 (325)
T ss_dssp HHHHH---HH------------SSSCHHHHHHHHTHHHHHHTTCC
T ss_pred HHHHH---Hc------------CCCCHHHHHHHHhHHHHHHHCcC
Confidence 22111 11 14888887778889999999984
|
| >d2qs8a1 b.92.1.9 (A:7-63,A:374-412) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Probab=92.87 E-value=0.072 Score=37.24 Aligned_cols=38 Identities=34% Similarity=0.393 Sum_probs=28.6
Q ss_pred ccccccCccccEEEEcCCCCCCCCcCChhhhhhhccCCCCeeEEEEccEE
Q 011766 403 IGSLEAGKKADMVVVDPFSWPMVPVHDRITSLVYCMRTENVVSVMCNGQW 452 (478)
Q Consensus 403 ~G~l~~G~~ADlvv~d~~~~~~~~~~d~~~~~~~~~~~~~v~~v~v~G~~ 452 (478)
.+-|++|+.||+++++.||+. |.-. ..++..|+++|++
T Consensus 56 ~PGL~~g~~~d~~~~~~~P~~-----di~~-------~~~v~~v~~~G~~ 93 (96)
T d2qs8a1 56 LPSIESGKLADLIAVKGNPIE-----DISV-------LENVDVVIKDGLL 93 (96)
T ss_dssp EESCCTTSBCCEEEESSCTTT-----CGGG-------GGGEEEEEETTEE
T ss_pred ccCccccCcccEEEEcCChhH-----HhHh-------hcCccEEEECCEE
Confidence 345999999999999999543 3211 2478999999984
|
| >d2ooda1 b.92.1.4 (A:3-72,A:398-467) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Bradyrhizobium japonicum [TaxId: 375]
Probab=92.35 E-value=0.036 Score=41.69 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=32.3
Q ss_pred eeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEE
Q 011766 37 VFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQIL 78 (478)
Q Consensus 37 ~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v 78 (478)
..++|.++|+||+|+++|+..++....| +++++|.+++++
T Consensus 30 ~~~DG~llie~G~I~a~G~~~~l~~~~p--ga~v~d~~d~lg 69 (140)
T d2ooda1 30 FHQDGLMVVTDGVIKAFGPYEKIAAAHP--GVEITHIKDRII 69 (140)
T ss_dssp EEEEEEEEEESSBEEEEEEHHHHHHHST--TCEEEEEEEEEE
T ss_pred EecCcEEEEeCCEEEEecCHHHHhhcCC--CceEEecCCceE
Confidence 4468999999999999999887766554 678999888754
|
| >d3be7a1 b.92.1.9 (A:3-56,A:360-400) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Zn-dependent arginine carboxypeptidase species: Unidentified organism [TaxId: 32644]
Probab=90.73 E-value=0.39 Score=32.93 Aligned_cols=63 Identities=11% Similarity=0.304 Sum_probs=46.9
Q ss_pred ceeEEEecEEEeeCCCCceeecceEEEECCEEEEEcCChhhhhhhccCCCeEEeCCCCEEeeccc---ccccccc
Q 011766 19 STMILHNAVIVTMDKESRVFRNGGVFVVQDRIKAIGQSADILQQFSQMADQIIDLQSQILLPGFV---NTHVHTS 90 (478)
Q Consensus 19 ~~~~i~n~~I~t~d~~~~~~~~~~v~I~~G~I~~ig~~~~~~~~~~~~~~~viD~~G~~v~PGfI---D~H~H~~ 90 (478)
.+++|+--.+++. ....+-..+++|++|+|.+|+.... ..++++...+++++|++- ++|.++.
T Consensus 2 ~d~~~~pk~yL~~--~~g~li~a~l~v~~G~i~ai~~~t~-------~~A~il~l~d~illG~I~~Gk~ADlvlv 67 (95)
T d3be7a1 2 EDFLIKSKGYLDI--QTGEIIKADLLIRNGKIAEIGKINT-------KDATVISIPDLILIPQIKEGFDADIVGV 67 (95)
T ss_dssp CCEEEEEEEEECT--TTCCEECCEEEEETTEEEEEECCCC-------SSSEEEEEEEEEEEESCCTTSBCCEEEE
T ss_pred CceEecCcceecc--ccchhhhhhhhhhcCcHHHHHhhcc-------ChHHhcCCCCccccceeccCceeeEEEE
Confidence 4678888888843 2334567799999999999987432 467999999988888876 6666663
|
| >d1v77a_ c.6.3.2 (A:) Ribonuclease P protein component 3, Rnp3 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: 7-stranded beta/alpha barrel superfamily: PHP domain-like family: RNase P subunit p30 domain: Ribonuclease P protein component 3, Rnp3 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.26 E-value=0.24 Score=39.68 Aligned_cols=86 Identities=9% Similarity=0.017 Sum_probs=56.7
Q ss_pred CChhHHHHHHhcCCeEEECccchhhc------cCC----CcHHHHHHCCCcEEEcCCCCCCCCCcCHHHHHHHHHHHhcc
Q 011766 297 VNHTEIGLLSRAGVKVSHCPASAMRM------LGF----APIKEMLHADICVSLGTDGAPSNNRMSIVDEMYLASLINKG 366 (478)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~p~~~~~~------~~~----~~~~~~~~~gv~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~ 366 (478)
++......+++.|+.+.++.....+. ... ..++.....|+++.++||......--++..-+..+...
T Consensus 106 ~~hvlak~A~e~gV~lEI~~s~ll~~~~~~R~~~i~~~~~~l~l~kky~~piVisSdAh~~~dlr~p~dv~~L~~~~--- 182 (202)
T d1v77a_ 106 IDHVLAKLMVKKNVALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKVRRFLTSSAQEKWDVRYPRDLISLGVVI--- 182 (202)
T ss_dssp CCHHHHHHHHHHTCEEEEESHHHHHSCHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCSSGGGCCCHHHHHHHHHHT---
T ss_pred ccHHHHHHHHHCCeEEEEEchhhhccCcccHHHHHHHHHHHHHHHHhcCCcEEEecCCCChhhcCCHHHHHHHHHHc---
Confidence 56677889999999999885544322 111 23334456799999999975432112333333333221
Q ss_pred cccccCCCCCCCCCCHHHHHHHHhHHHHHHc
Q 011766 367 REVFANGTTDPAALPAETVLRMATINGAKSV 397 (478)
Q Consensus 367 ~~~~~~~~~~~~~ls~~~al~~~T~~pA~~l 397 (478)
||+.+++.++.|.+|.+++
T Consensus 183 ------------Gl~~~~ak~als~~P~~il 201 (202)
T d1v77a_ 183 ------------GMEIPQAKASISMYPEIIL 201 (202)
T ss_dssp ------------TCCHHHHHHTTTHHHHHHH
T ss_pred ------------CCCHHHHHHHHHHHHHHHh
Confidence 6999999999999999876
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