Citrus Sinensis ID: 011777

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------
Protein Sequence
MAFLQRQILKRTVKESKAKLNICTSFSTAASASAVATTPPQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccEEEEEEccEEEEccccEEEEEccccEEcccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHHHcccccEEEEcccccccHHHHHccccccccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccHHHHHHHHHHHHHHccEEEEcccccccccccccccccccccccccEEEEccccccccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHcccEEccccccccEEEEcccccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHcccccccccEEEEEEcEEEEccccEEEEccHHHHcccccEccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHHHHcccEEEEEccccccccHHHHHcccccccccccccccEEEccccccccccccccHHHHHHHHHHHHHHHccccEEEEEcccEEcccccEEEccHHHHHHHHHHHHHccEEEEEcccccccccccccEEEEcccccccHHHHHHHHHccccEEEEEccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccEEEEEEEcccccccEcccHHHHHHHHHHHHcEEEEEccccccEEEEccccEccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAFLQRQILKRTVKESKAKLNICTSFstaasasavattppqlppfdhdpkpytgpsadQVFQKRKqflgpsifhyyqkplnivegkMQYLFDENGRRYLDAFAGIVTvscghchpdVLNAIFEQSKLLQHATTIYLHHAIADFAEALaskmpgnlKVVYFVNSGTEANELAMLMARLSTGNLGMIALRnayhggssgtigltalntwkypipqgeihhvvnpdpyhgsfgsdAARYAQDLqdhidfgtsgkVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVciadevqtgfgrtgshywgfetqgviPDIVTMAKGignglplgavvttpEIANVMAQKIQfntfggnpvcsaggLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVtdrkektpakAETAVLFEKLRELGVLvgkgglhgnvfrikppmcftkddaDFLVDALDYSMSKL
Flexible Loop (DISEMBL)
maflqrqilkrtvkeskaklNICTSFSTAASASAVATTPPQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHcadvgshllgrlrtlqerhdiigdvrgrgLMVGMElvtdrkektpakAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL
Low Complexity Region (SEG)
MAFLQRQILKRTVKESKAKLNICtsfstaasasavattPPQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRElgvlvgkgglhgnvFRIKPPMCFTKDDADFLVDALDYSMSKL
Disordered region (IsUnstruct)
*******************LNICT*************************************QKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDR******KAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDY*****
Disordered Region (DISOPRED)
*******************************************************S*DQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTAL******IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL
Disordered Region (DISEMBL)
MAFLQRQILKRTVKESKAKLNICTSFSTA********TPPQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL
Disordered Region (DISPRO)
***************************************PQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAFLQRQILKRTVKESKAKLNICTSFSTAASASAVATTPPQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	477	2.2.26 [Sep-21-2011]
Q940M2	476	Alanine--glyoxylate amino	yes	no	0.987	0.989	0.819	0.0
Q9SR86	481	Alanine--glyoxylate amino	no	no	0.945	0.937	0.631	0.0
Q94AL9	477	Alanine--glyoxylate amino	no	no	0.991	0.991	0.629	1e-180
Q9BYV1	514	Alanine--glyoxylate amino	yes	no	0.997	0.926	0.422	1e-114
Q5RFA3	514	Alanine--glyoxylate amino	yes	no	0.968	0.898	0.429	1e-113
Q17QF0	514	Alanine--glyoxylate amino	yes	no	0.945	0.877	0.429	1e-111
Q3UEG6	513	Alanine--glyoxylate amino	yes	no	0.974	0.906	0.428	1e-110
Q64565	512	Alanine--glyoxylate amino	yes	no	0.920	0.857	0.424	1e-107
Q7SY54	492	Ethanolamine-phosphate ph	no	no	0.861	0.835	0.430	3e-92
Q6DEB1	509	Ethanolamine-phosphate ph	N/A	no	0.878	0.823	0.436	6e-92

>sp|Q940M2|AGT21_ARATH Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=AGT2 PE=1 SV=1

 Score =  824 bits (2129), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/477 (81%), Positives = 434/477 (90%), Gaps = 6/477 (1%)

Query: 4   LQRQILKRTVKESKAKLNIC---TSFSTAASASAVATTPPQLPPFDHDPKPYTGPSADQV 60
           LQRQ+LKR   +   +  I    T FST+ S   +A  PP +PPF H P+PY GPSAD+V
Sbjct: 3   LQRQLLKRATSDIYHRRAISLLRTDFSTSPS---IADAPPHIPPFVHQPRPYKGPSADEV 59

Query: 61  FQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNA 120
            QKRK+FLGPS+FHYYQKPLNIVEGKMQYL+DE+GRRYLDAFAGIVTVSCGHCHPD+LNA
Sbjct: 60  LQKRKKFLGPSLFHYYQKPLNIVEGKMQYLYDESGRRYLDAFAGIVTVSCGHCHPDILNA 119

Query: 121 IFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTG 180
           I EQSKLLQHATTIYLHHAI DFAEALA+KMPGNLKVVYFVNSG+EANELAM+MARL TG
Sbjct: 120 ITEQSKLLQHATTIYLHHAIGDFAEALAAKMPGNLKVVYFVNSGSEANELAMMMARLYTG 179

Query: 181 NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDL 240
           +L MI+LRNAYHGGSS TIGLTALNTWKYP+PQGEIHHVVNPDPY G FGSD + YA+D+
Sbjct: 180 SLEMISLRNAYHGGSSNTIGLTALNTWKYPLPQGEIHHVVNPDPYRGVFGSDGSLYAKDV 239

Query: 241 QDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRT 300
            DHI++GTSGKVAGFIAETIQGVGGAVELAPGYLK VY+IVR AGGVCIADEVQTGFGRT
Sbjct: 240 HDHIEYGTSGKVAGFIAETIQGVGGAVELAPGYLKSVYEIVRNAGGVCIADEVQTGFGRT 299

Query: 301 GSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAG 360
           GSHYWGF+TQ V+PDIVTMAKGIGNGLPLGAVVTTPEIA+V+A KI FNTFGGNPVCSAG
Sbjct: 300 GSHYWGFQTQDVVPDIVTMAKGIGNGLPLGAVVTTPEIASVLASKILFNTFGGNPVCSAG 359

Query: 361 GLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKT 420
           GLAVL VIDKE+RQ HCA+VGSHL+ RL+ +Q+RHDIIGDVRGRGLMVG+ELV+DRK+KT
Sbjct: 360 GLAVLNVIDKEKRQEHCAEVGSHLIQRLKDVQKRHDIIGDVRGRGLMVGIELVSDRKDKT 419

Query: 421 PAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477
           PAKAET+VLFE+LRELG+LVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYS+S+L
Sbjct: 420 PAKAETSVLFEQLRELGILVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSISRL 476

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 4EC: 4

>sp|Q9SR86|AGT23_ARATH Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial OS=Arabidopsis thaliana GN=At3g08860 PE=2 SV=1

 Score =  634 bits (1636), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 285/451 (63%), Positives = 365/451 (80%)

Query: 27  STAASASAVATTPPQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGK 86
           +++   +   T  P++PPF++ P PY GPS  ++  KR++FL P++FH+Y  PLNIVE K
Sbjct: 31  TSSVRETETETKLPKMPPFNYSPPPYDGPSTAEIIAKRREFLSPALFHFYNTPLNIVEAK 90

Query: 87  MQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEA 146
           MQY+FDENGRRYLDAF GI TVSCGHCHP+V+N++ +Q KL+ H+T +YL+H I+DFAEA
Sbjct: 91  MQYVFDENGRRYLDAFGGIATVSCGHCHPEVVNSVVKQLKLINHSTILYLNHTISDFAEA 150

Query: 147 LASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNT 206
           L S +PG+LKVV+F NSGTEANELAM+MARL TG   +++LRN+YHG ++ T+G TA + 
Sbjct: 151 LVSTLPGDLKVVFFTNSGTEANELAMMMARLYTGCNDIVSLRNSYHGNAAATMGATAQSN 210

Query: 207 WKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGA 266
           WK+ + Q  +HH +NPDPY G FGSD  +YA D+ D I FGTSG+VAGFI E+IQGVGG 
Sbjct: 211 WKFNVVQSGVHHAINPDPYRGIFGSDGEKYASDVHDLIQFGTSGQVAGFIGESIQGVGGI 270

Query: 267 VELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG 326
           VELAPGYL   YDIVRKAGGVCIADEVQ+GF RTG+H+WGF++ GVIPDIVTMAKGIGNG
Sbjct: 271 VELAPGYLPAAYDIVRKAGGVCIADEVQSGFARTGTHFWGFQSHGVIPDIVTMAKGIGNG 330

Query: 327 LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLG 386
           +PLGAVVTTPEIA V++++  FNTFGGNP+C+A G AVLRV+ +E+ Q +   VGSHL  
Sbjct: 331 IPLGAVVTTPEIAGVLSRRSYFNTFGGNPMCTAAGHAVLRVLHEEKLQENANLVGSHLKR 390

Query: 387 RLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH 446
           RL  L+ ++++IGDVRGRGLM+G+E V DR  KTPAKAET  L ++++E+GVLVGKGG +
Sbjct: 391 RLTLLKNKYELIGDVRGRGLMLGVEFVKDRDLKTPAKAETLHLMDQMKEMGVLVGKGGFY 450

Query: 447 GNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477
           GNVFRI PP+CFT  DADFLVD +D++MSK+
Sbjct: 451 GNVFRITPPLCFTLSDADFLVDVMDHAMSKM 481

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 4

>sp|Q94AL9|AGT22_ARATH Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial OS=Arabidopsis thaliana GN=AGT3 PE=2 SV=2

 Score =  630 bits (1624), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 301/478 (62%), Positives = 373/478 (78%), Gaps = 5/478 (1%)

Query: 4   LQRQILKRTVKESKAKL--NICTSFSTAASASAVATTPPQ--LPPFDHDPKPYTGPSADQ 59
           +QR   KR+V+     L     +S S AA+AS   +   Q  LPPF + P PYTGPSAD 
Sbjct: 1   MQRFAAKRSVQNISVSLWRRCISSTSQAATASVKDSDEFQARLPPFAYTPPPYTGPSADV 60

Query: 60  VFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLN 119
           +  KRK+FL PS+F  Y+KPLNIV+GKMQYLFDE+GRRYLDAFAGI  V+CGHCHPDV+ 
Sbjct: 61  ILSKRKEFLSPSMFCLYRKPLNIVDGKMQYLFDESGRRYLDAFAGIAVVNCGHCHPDVVE 120

Query: 120 AIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLST 179
            +  Q K LQH T +YL+HAIADF+EALASK+PG+LKVV+F NSGTEANELA++MA+L T
Sbjct: 121 PVINQIKRLQHPTVLYLNHAIADFSEALASKLPGDLKVVFFTNSGTEANELALMMAKLYT 180

Query: 180 GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQD 239
           G   ++A+RN YHG ++ T+G T  + WK+ + Q  +HH +NPDPY G FGSD  +YA+D
Sbjct: 181 GCQDIVAVRNGYHGNAAATMGATGQSMWKFNVVQNSVHHALNPDPYRGVFGSDGEKYAKD 240

Query: 240 LQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGR 299
           LQD I +GT+G +AGFI E IQGVGG VELAPGYL   YD V+KAGG+ IADEVQ+GF R
Sbjct: 241 LQDLIQYGTTGHIAGFICEAIQGVGGIVELAPGYLSAAYDTVKKAGGLFIADEVQSGFAR 300

Query: 300 TGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSA 359
           TG ++WGFE   V+PDIVTMAKGIGNG PLGAVVTTPEIA V+ ++  FNTFGGN V + 
Sbjct: 301 TG-NFWGFEAHNVVPDIVTMAKGIGNGFPLGAVVTTPEIAGVLTRRSYFNTFGGNSVSTT 359

Query: 360 GGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEK 419
            GLAVL VI+KE+ Q + A VGS+L  +L  L+E+H+IIGDVRGRGLM+G+ELV+DRK K
Sbjct: 360 AGLAVLNVIEKEKLQENAAMVGSYLKEKLTQLKEKHEIIGDVRGRGLMLGVELVSDRKLK 419

Query: 420 TPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477
           TPA AET  + ++++ELGVL+GKGG  GNVFRI PP+CFTKDDADFLV+A+DYSMSK+
Sbjct: 420 TPATAETLHIMDQMKELGVLIGKGGYFGNVFRITPPLCFTKDDADFLVEAMDYSMSKM 477

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 4

>sp|Q9BYV1|AGT2_HUMAN Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Homo sapiens GN=AGXT2 PE=1 SV=1

 Score =  410 bits (1055), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/507 (42%), Positives = 306/507 (60%), Gaps = 31/507 (6%)

Query: 1   MAFLQRQILKRTVKESKAK--LNICTSFSTAASASAVAT----TPPQLPPFDHDPKPYTG 54
           M  + R +L+     + A   L +    S   S ++V      T P++PP D  P+ Y  
Sbjct: 1   MTLIWRHLLRPLCLVTSAPRILEMHPFLSLGTSRTSVTKLSLHTKPRMPPCDFMPERYQS 60

Query: 55  PSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCH 114
              ++V +  K+ L P +  Y+QKPL + +G M++LFD  G RYLD F+GIVTVS GHCH
Sbjct: 61  LGYNRVLEIHKEHLSPVVTAYFQKPLLLHQGHMEWLFDAEGSRYLDFFSGIVTVSVGHCH 120

Query: 115 PDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLM 174
           P V     +Q   L H +T++ H  + ++AE LA+ +P  LKV++ VNSG+EANELAMLM
Sbjct: 121 PKVNAVAQKQLGRLWHTSTVFFHPPMHEYAEKLAALLPEPLKVIFLVNSGSEANELAMLM 180

Query: 175 ARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGE-IHHVVNPDPYHGSFGSDA 233
           AR  + N+ +I+ R AYHG S  T+GLT + T+K  +P G      + PD + G +G   
Sbjct: 181 ARAHSNNIDIISFRGAYHGCSPYTLGLTNVGTYKMELPGGTGCQPTMCPDVFRGPWGGSH 240

Query: 234 AR----------------------YAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAP 271
            R                      Y +  +D +    +  +AGF AE IQGV G V+   
Sbjct: 241 CRDSPVQTIRKCSCAPDCCQAKDQYIEQFKDTLSTSVAKSIAGFFAEPIQGVNGVVQYPK 300

Query: 272 GYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGA 331
           G+LK  +++VR  GGVCIADEVQTGFGR GSH+WGF+T  V+PDIVTMAKGIGNG P+ A
Sbjct: 301 GFLKEAFELVRARGGVCIADEVQTGFGRLGSHFWGFQTHDVLPDIVTMAKGIGNGFPMAA 360

Query: 332 VVTTPEIANVMAQKIQ-FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRT 390
           V+TTPEIA  +A+ +Q FNTFGGNP+  A G AVL VI +E  Q +  +VG+++L +   
Sbjct: 361 VITTPEIAKSLAKCLQHFNTFGGNPMACAIGSAVLEVIKEENLQENSQEVGTYMLLKFAK 420

Query: 391 LQERHDIIGDVRGRGLMVGMELVTDRKEKTP-AKAETAVLFEKLRELGVLVGKGGLHGNV 449
           L++  +I+GDVRG+GLM+G+E+V D+    P  + E   + E  + +G+LVG+G +    
Sbjct: 421 LRDEFEIVGDVRGKGLMIGIEMVQDKISCRPLPREEVNQIHEDCKHMGLLVGRGSIFSQT 480

Query: 450 FRIKPPMCFTKDDADFLVDALDYSMSK 476
           FRI P MC TK + DF V+    ++++
Sbjct: 481 FRIAPSMCITKPEVDFAVEVFRSALTQ 507

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q5RFA3|AGT2_PONAB Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Pongo abelii GN=AGXT2 PE=2 SV=1

 Score =  410 bits (1054), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/489 (42%), Positives = 302/489 (61%), Gaps = 27/489 (5%)

Query: 13  VKESKAKLNICTSFSTAASASAVATTPPQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSI 72
           + E +  LN+  S+++    S    T P++PP D  P+ Y     ++V +  K+ L P +
Sbjct: 21  ILEMRPFLNLGASWTSVTKLSL--HTKPRMPPCDFMPERYQSLGYNRVLEIHKEHLSPVV 78

Query: 73  FHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT 132
             Y+QKPL + +G M++LFD  G RYLD F+GIVTVS GHCHP V     +Q   L H +
Sbjct: 79  TAYFQKPLLLHQGHMEWLFDAEGNRYLDFFSGIVTVSVGHCHPKVNAVAQKQLGRLWHTS 138

Query: 133 TIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYH 192
           T++ H  + ++AE LA+ +P  LKV++ VNSG+EANELAMLMAR  + N+ +I+ R AYH
Sbjct: 139 TVFFHPPMHEYAEKLAALLPEPLKVIFLVNSGSEANELAMLMARAHSNNIDIISFRGAYH 198

Query: 193 GGSSGTIGLTALNTWKYPIPQGE-IHHVVNPDPYHGSFGSDAAR---------------- 235
           G S  T+GLT + T+K  +P G      + PD + G +G    R                
Sbjct: 199 GCSPYTLGLTNIGTYKMELPGGTGCQPTMCPDVFRGPWGGSHCRDSPVQTIRKCSCAPDC 258

Query: 236 ------YAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI 289
                 Y +  +D +    +  +AGF AE IQGV G V+   G+LK  +++VR  GGVCI
Sbjct: 259 CQAKDQYIEQFKDTLSTSVAKSIAGFFAEPIQGVNGVVQYPKGFLKEAFELVRARGGVCI 318

Query: 290 ADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQ-F 348
           ADEVQTGFGR GSH+ GF+T  V+PDIVTMAKGIGNG P+ AVVTTPEIA  + +++Q F
Sbjct: 319 ADEVQTGFGRLGSHFRGFQTHDVLPDIVTMAKGIGNGFPMAAVVTTPEIAKSLVKRLQHF 378

Query: 349 NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMV 408
           NTFGGNP+  A G AVL VI +E  Q +  +VG+++L +   L++  +I+GDVRG+GLM+
Sbjct: 379 NTFGGNPMACAIGSAVLEVIKEENLQENSQEVGTYMLLQFAKLRDEFEIVGDVRGKGLMI 438

Query: 409 GMELVTDRKEKTP-AKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLV 467
           G+E+V D+  + P  + E   + E  + +G+LVG+G +    FRI P MC TK + DF V
Sbjct: 439 GIEMVQDKISRRPLPREEVNQIHEDCKHMGLLVGRGSIFSQTFRIAPSMCITKPEVDFAV 498

Query: 468 DALDYSMSK 476
           +    ++++
Sbjct: 499 EVFRSALTQ 507

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q17QF0|AGT2_BOVIN Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Bos taurus GN=AGXT2 PE=2 SV=1

 Score =  402 bits (1034), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/482 (42%), Positives = 294/482 (60%), Gaps = 31/482 (6%)

Query: 24  TSFSTAASASAVATT------PPQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQ 77
           T FS  A A   + T       P +PP D  P+ Y   +  +V +  KQ L P    Y+ 
Sbjct: 24  TCFSLKARAFWTSVTRCGLHTKPSMPPCDFTPERYQSLAYSRVLEIHKQHLSPVHTAYFP 83

Query: 78  KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH 137
           +PL + +G +++LFD  G RYLD F+GIVTVS GHCHP V  A   Q   L H ++++ H
Sbjct: 84  EPLLLHQGHVEWLFDHEGNRYLDFFSGIVTVSVGHCHPKVNAAAQRQLGRLWHTSSVFFH 143

Query: 138 HAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSG 197
             I ++AE L++ +P  LKVV+ VNSG+EAN+LAMLMAR  + +  +I+ R AYHG S  
Sbjct: 144 PLIHEYAEKLSALLPEPLKVVFLVNSGSEANDLAMLMARAHSNSTDIISFRGAYHGCSPY 203

Query: 198 TIGLTALNTWKYPIPQGE-IHHVVNPDPYHGSFGSDAAR--------------------- 235
           T+GLT +  +K  +P G      + PD +HG +G    R                     
Sbjct: 204 TLGLTNVGIYKMDLPHGMGCQPTMCPDIFHGPWGGSHCRDSPVQTIRKCSCAPDCCQAKD 263

Query: 236 -YAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQ 294
            Y +  +D +    +  +AGF AE IQGV G V+   G+LK  +++VR+ GGVCIADEVQ
Sbjct: 264 QYIEQFKDTLSTSVAKSIAGFFAEPIQGVNGVVQYPKGFLKEAFELVRERGGVCIADEVQ 323

Query: 295 TGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK-IQFNTFGG 353
           TGFGR GSH+WGF+T  V+PDIVTMAKGIGNG P+ AVVTTP+IA  + ++ + FNTFGG
Sbjct: 324 TGFGRLGSHFWGFQTHDVLPDIVTMAKGIGNGFPMAAVVTTPDIAKSLTKRMLHFNTFGG 383

Query: 354 NPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELV 413
           NP+  A G AVL VI +E  Q +  +VG+++L +L  L++  +I+GDVRG+GLM+G+E+V
Sbjct: 384 NPMACAVGSAVLEVIKEENLQENSQEVGTYMLLKLAKLRDEFEIVGDVRGKGLMIGIEMV 443

Query: 414 TDRKEKTP-AKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDY 472
            D++ + P  + E   +    + +G+L+G+GGL    FRI P MC TK + DF V+    
Sbjct: 444 KDKESRQPLPREEVNQIHHDCKCMGLLIGRGGLFSQTFRIAPSMCITKPEVDFAVEVFRS 503

Query: 473 SM 474
           ++
Sbjct: 504 AL 505

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q3UEG6|AGT2_MOUSE Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Mus musculus GN=Agxt2 PE=2 SV=1

 Score =  399 bits (1025), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/495 (42%), Positives = 299/495 (60%), Gaps = 30/495 (6%)

Query: 1   MAFLQRQILKRTVKESKAK-LNICTSFSTAASASAVAT----TPPQLPPFDHDPKPYTGP 55
           M+   R + K    E+  + L +  S S  AS  AV      T   +PP D  P+ Y   
Sbjct: 1   MSLAWRNLQKPFYLETSLRILQMRPSLSLGASRIAVPKLTLHTKHSMPPCDFSPEKYQSL 60

Query: 56  SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHP 115
           +  +V    KQ L P    Y++KPL + +G M++LFD  G RYLD F+GIVTVS GHCHP
Sbjct: 61  AYSRVLAIHKQHLSPVDTAYFRKPLLLHQGHMEWLFDSEGNRYLDFFSGIVTVSVGHCHP 120

Query: 116 DVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMA 175
            V     +Q   L H ++++ H  + ++AE L++ +P  LKV++ VNSG+EAN+LAM+MA
Sbjct: 121 KVSAVAKKQIDRLWHTSSVFFHSPMHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMVMA 180

Query: 176 RLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQG-EIHHVVNPDPYHGSFG---- 230
           R  + +  +I+ R AYHG S  T+GLT +  +K  +P G      + PD + G +G    
Sbjct: 181 RAHSNHTDIISFRGAYHGCSPYTLGLTNVGIYKMEVPGGIGCQSTMCPDVFRGPWGGIHC 240

Query: 231 ------------------SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPG 272
                                 RY +  +D ++   +  +AGF AE IQGV G V+    
Sbjct: 241 RDSPVQTVRDCSCAPDCCQAKERYIEQFKDTLNTSVATSIAGFFAEPIQGVNGVVQYPKE 300

Query: 273 YLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAV 332
           +LK  + +VR+ GGVCIADEVQTGFGR GSH+WGF+T  V+PDIVTMAKGIGNG P+ AV
Sbjct: 301 FLKEAFALVRERGGVCIADEVQTGFGRLGSHFWGFQTHDVLPDIVTMAKGIGNGFPMAAV 360

Query: 333 VTTPEIANVMAQK-IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTL 391
           VTTPEIA  +A++ + F+TFGGNP+  A G AVL VI++E  Q +  +VG+++L +   L
Sbjct: 361 VTTPEIAKSLAKRLLHFSTFGGNPLACAIGSAVLEVIEEENLQRNSQEVGTYMLLKFAKL 420

Query: 392 QERHDIIGDVRGRGLMVGMELVTDRKEKTP-AKAETAVLFEKLRELGVLVGKGGLHGNVF 450
           ++  DI+GDVRG+GLMVG+E+V D+  + P  K E   + E  +++G+LVG+GG     F
Sbjct: 421 RDEFDIVGDVRGKGLMVGIEMVQDKISRQPLPKTEVNQIHEDCKDMGLLVGRGGNFSQTF 480

Query: 451 RIKPPMCFTKDDADF 465
           RI PPMC TK + DF
Sbjct: 481 RIVPPMCVTKMEVDF 495

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q64565|AGT2_RAT Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Rattus norvegicus GN=Agxt2 PE=1 SV=2

 Score =  390 bits (1002), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/464 (42%), Positives = 285/464 (61%), Gaps = 25/464 (5%)

Query: 38  TPPQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRR 97
           T   +PP D  P+ Y   + + V +  KQ L P    Y+QKPL + +G M++LFD  G R
Sbjct: 42  TKHNMPPCDFSPEKYQSLAYNHVLEIHKQHLSPVNTAYFQKPLLLHQGHMEWLFDSEGNR 101

Query: 98  YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKV 157
           YLD F+GIVTV  GHCHP V     +Q   L H ++++ H  + ++AE L++ +P  LKV
Sbjct: 102 YLDFFSGIVTVGVGHCHPKVTAVAKKQMDRLWHTSSVFFHSPMHEYAERLSALLPEPLKV 161

Query: 158 VYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQG-EI 216
           ++ VNSG+EAN+LAM+MAR  + +  +I+ R AYHG S  T+GLT +  +K  +P     
Sbjct: 162 IFLVNSGSEANDLAMVMARAYSNHTDIISFRGAYHGCSPYTLGLTNVGIYKMKVPSTIAC 221

Query: 217 HHVVNPDPYHGSFGSD----------------------AARYAQDLQDHIDFGTSGKVAG 254
              + PD + G +G                          RY +  +D ++   +  +AG
Sbjct: 222 QSTMCPDVFRGPWGGSHCRDSPVQTVRKCSCAPDGCQAKERYIEQFKDTLNTSVATSIAG 281

Query: 255 FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIP 314
           F AE IQGV G V+    +LK  + +VR+ GGVCIADEVQTGFGR GSH+WGF+T   +P
Sbjct: 282 FFAEPIQGVNGVVQYPKEFLKEAFALVRERGGVCIADEVQTGFGRLGSHFWGFQTHDTMP 341

Query: 315 DIVTMAKGIGNGLPLGAVVTTPEIANVMAQKI-QFNTFGGNPVCSAGGLAVLRVIDKERR 373
           DIVTMAKGIGNG P+ AVVTTPEIA+ +A+ +  F+TFGG+P+  A G AVL VI++E  
Sbjct: 342 DIVTMAKGIGNGFPMAAVVTTPEIASSLAKHLHHFSTFGGSPLACAIGSAVLEVIEEENL 401

Query: 374 QAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTP-AKAETAVLFEK 432
           Q +  +VG+++L +   L++  DI+GDVRG+GLMVG+E+V D+  + P  K E   + E 
Sbjct: 402 QRNSQEVGTYMLLKFAKLRDEFDIVGDVRGKGLMVGIEMVQDKISRQPLPKTEVNQIHED 461

Query: 433 LRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476
            +++G+LVG+GG     FRI PPM  TK + DF  +    ++++
Sbjct: 462 CKDMGLLVGRGGNFSQTFRIAPPMRVTKLEVDFAFEVFRSALTQ 505

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q7SY54|AT2L1_DANRE Ethanolamine-phosphate phospho-lyase OS=Danio rerio GN=agxt2l1 PE=2 SV=1

 Score =  339 bits (869), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 184/427 (43%), Positives = 269/427 (62%), Gaps = 16/427 (3%)

Query: 64  RKQFLGPSIFHYY-QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIF 122
           RK+ +GPS   ++   P+ IV  K QY+++E   +YLD    +  V  GHCHPDV++A  
Sbjct: 15  RKKHVGPSCKVFFDHDPIKIVRAKGQYMYNEKDEKYLDCINNVAHV--GHCHPDVVSAGA 72

Query: 123 EQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNL 182
           +Q +LL +  + +LH ++  +A+ L + +P  L V YFVNSG+EAN+LA+ +A   TG+ 
Sbjct: 73  KQMELL-NTNSRFLHDSLVLYAQRLQATLPEKLSVCYFVNSGSEANDLALRLAWQYTGHK 131

Query: 183 GMIALRNAYHGGSSGTIGLTALNTWKYP--IPQGEIHHVVNPDPYHGSFGSD----AARY 236
            +I L NAYHG  S  I ++     +     P   +H  ++PD Y G +  D    A  Y
Sbjct: 132 DIITLDNAYHGHVSSLIDISPYKFHQMAGAEPSQHVHVALSPDTYRGKYREDHPDPATAY 191

Query: 237 AQDLQDHID--FGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQ 294
           A+++++ I+       ++A FIAE++Q  GG V    GY + V   VR AGG+ IADEVQ
Sbjct: 192 AENVKEVIEEAHKKGHEIAAFIAESLQSCGGQVIPPMGYFQKVAQHVRNAGGIFIADEVQ 251

Query: 295 TGFGRTGSHYWGFETQG--VIPDIVTMAKGIGNGLPLGAVVTTPEIA-NVMAQKIQ-FNT 350
            GFGR G+H+WGF+ QG   +PDIVTM K IGNG P+  V+T+ EIA + M+  ++ FNT
Sbjct: 252 VGFGRVGTHFWGFQLQGEDFVPDIVTMGKPIGNGHPMSCVITSREIAESFMSSGMEYFNT 311

Query: 351 FGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM 410
           FGGNPV  A GLAVL VI+KE  Q +   VG +L   L  L++RH ++GDVRGRGL VG+
Sbjct: 312 FGGNPVSCAIGLAVLNVIEKEDLQGNALHVGGYLTQLLEDLKKRHPLVGDVRGRGLFVGL 371

Query: 411 ELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDAL 470
           ELV ++ ++TPA AE   +  +L+E  +L+   G H NV + KPPMCF+++DA+F V+ +
Sbjct: 372 ELVRNQSKRTPATAEAQEVIYRLKEQRILLSADGPHRNVLKFKPPMCFSREDAEFAVEKI 431

Query: 471 DYSMSKL 477
           D  ++ L
Sbjct: 432 DQILTDL 438

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q6DEB1|AT2L1_XENLA Ethanolamine-phosphate phospho-lyase OS=Xenopus laevis GN=agxt2l1 PE=2 SV=1

 Score =  338 bits (867), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 190/435 (43%), Positives = 265/435 (60%), Gaps = 16/435 (3%)

Query: 56  SADQVFQKRKQFLGPSIFHYY-QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCH 114
           + +++ + RK+ +GPS   ++   P+ IV  K QY+FDE G RYLD    +  V  GH H
Sbjct: 6   TKEKIMEIRKKHIGPSCKVFFANDPIKIVHAKGQYMFDEKGERYLDCINNVAHV--GHSH 63

Query: 115 PDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLM 174
           P+V  A  +Q +LL +  + +LH  +  +AE L S +P  L V YFVNSG+EAN+LA+ +
Sbjct: 64  PEVTKAALKQMELL-NTNSRFLHDNLVRYAECLISTLPEKLSVCYFVNSGSEANDLALRL 122

Query: 175 ARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY-PIPQGEIHHVV-NPDPYHGSFGSD 232
           AR  TG+  +I L +AYHG  +  I ++     +     Q E  HV  +PD Y G +  D
Sbjct: 123 ARQYTGHQDVITLDHAYHGHVTSLIDISPYKFHQLGKDAQKEYIHVAPSPDTYRGKYRED 182

Query: 233 ----AARYAQDLQDHIDFGTSGK--VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGG 286
               A+ YA+D++D I      K  +A FIAE++Q  GG +    GY + V + V KAGG
Sbjct: 183 HPDPASAYAKDVEDIIQKAHQNKRQIAAFIAESMQSCGGQIIPPAGYFQKVSEFVHKAGG 242

Query: 287 VCIADEVQTGFGRTGSHYWGFETQG--VIPDIVTMAKGIGNGLPLGAVVTTPEIANVM-A 343
           V IADEVQ GFGR G H+W F+ QG   +PDIVTM K IGNG P+  VVTT EIA    A
Sbjct: 243 VFIADEVQVGFGRVGKHFWSFQLQGEDFLPDIVTMGKPIGNGHPMSCVVTTKEIAEAFGA 302

Query: 344 QKIQ-FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR 402
             ++ FNTFGGNPV  A GLAVL +I+KE  + +   VG++L   L   +++H +IGD+R
Sbjct: 303 TGMEYFNTFGGNPVSCAIGLAVLDIIEKEDLRGNATTVGNYLTELLNEQKQKHPLIGDIR 362

Query: 403 GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDD 462
           G GL VG++LV DR  +TPA AE   +  KL+E  +L+   G + NV + KPPMCF K+D
Sbjct: 363 GVGLFVGVDLVKDRLFRTPATAEAQHIIYKLKEKRILLSADGPYRNVLKFKPPMCFNKED 422

Query: 463 ADFLVDALDYSMSKL 477
           A  +VD +D  ++ L
Sbjct: 423 AKLVVDEIDQCLTAL 437

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	477
224096247	476	predicted protein [Populus trichocarpa]	0.987	0.989	0.853	0.0
449462836	486	PREDICTED: alanine--glyoxylate aminotran	0.997	0.979	0.841	0.0
225438605	472	PREDICTED: alanine--glyoxylate aminotran	0.989	1.0	0.844	0.0
356525521	475	PREDICTED: alanine--glyoxylate aminotran	0.993	0.997	0.841	0.0
356512734	477	PREDICTED: alanine--glyoxylate aminotran	0.997	0.997	0.841	0.0
357519613	481	Alanine-glyoxylate aminotransferase-like	0.997	0.989	0.844	0.0
449521627	445	PREDICTED: alanine--glyoxylate aminotran	0.922	0.988	0.897	0.0
297797980	476	hypothetical protein ARALYDRAFT_490746 [	0.993	0.995	0.818	0.0
388517067	481	unknown [Medicago truncatula]	0.997	0.989	0.838	0.0
5731259	476	alanine:glyoxylate aminotransferase 2 ho	0.987	0.989	0.821	0.0

>gi|224096247|ref|XP_002310591.1| predicted protein [Populus trichocarpa] gi|222853494|gb|EEE91041.1| predicted protein [Populus trichocarpa]

 Score =  855 bits (2208), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/477 (85%), Positives = 439/477 (92%), Gaps = 6/477 (1%)

Query: 4   LQRQILKRTVKESKAKL---NICTSFSTAASASAVATTPPQLPPFDHDPKPYTGPSADQV 60
           LQ Q+L+R VKE+KAK    ++C+SFST  S      +PPQLPPFD+ PKPY GPSAD++
Sbjct: 3   LQTQMLRRNVKEAKAKFWWNSLCSSFSTVPSP---IDSPPQLPPFDYQPKPYKGPSADEI 59

Query: 61  FQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNA 120
            QKRK+FLGPS+F+YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHP +LNA
Sbjct: 60  LQKRKKFLGPSLFYYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPQILNA 119

Query: 121 IFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTG 180
           I EQSKLLQHATTIYL+H I DFAE LA+KMPGNLKVVYFVNSG+EANELAMLMARL +G
Sbjct: 120 IMEQSKLLQHATTIYLNHTIGDFAETLAAKMPGNLKVVYFVNSGSEANELAMLMARLYSG 179

Query: 181 NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDL 240
           NL MI+LRN+YHGGSSGTIGLTALNTWKY IPQGEIHHV+NPDPY G FGSD   YA+D+
Sbjct: 180 NLEMISLRNSYHGGSSGTIGLTALNTWKYSIPQGEIHHVINPDPYRGIFGSDPTGYAKDV 239

Query: 241 QDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRT 300
           QDHID+GTSGKVAGFI+ETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRT
Sbjct: 240 QDHIDYGTSGKVAGFISETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRT 299

Query: 301 GSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAG 360
           GSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIA VMAQKIQFNTFGGNPVCSAG
Sbjct: 300 GSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIAQVMAQKIQFNTFGGNPVCSAG 359

Query: 361 GLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKT 420
           GL VLRVID+E+RQ HCA VGSHL+GRLR LQ  HDIIGDVRGRGLMVG+ELVTDRKEKT
Sbjct: 360 GLEVLRVIDQEKRQEHCAAVGSHLIGRLRELQRSHDIIGDVRGRGLMVGIELVTDRKEKT 419

Query: 421 PAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477
           PAKAETA+LFEKLRELG+LVGKGG+HGNVFRIKPPMCFTKDDAD LVDALDYSMSKL
Sbjct: 420 PAKAETAILFEKLRELGILVGKGGIHGNVFRIKPPMCFTKDDADCLVDALDYSMSKL 476

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462836|ref|XP_004149146.1| PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial-like [Cucumis sativus]

 Score =  849 bits (2194), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/487 (84%), Positives = 441/487 (90%), Gaps = 11/487 (2%)

Query: 1   MAFLQRQILKRTVKESKAKL-------NICTSFSTAASASAVA---TTPPQLPPFDHDPK 50
           MAF Q Q LK+ ++E+ +K          C SFS+  S+ A      + P LPPFD++P+
Sbjct: 1   MAF-QTQFLKKALREANSKALHGFSRPTFCASFSSIPSSYAAMGADESKPVLPPFDYEPR 59

Query: 51  PYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSC 110
           PY GP  D++FQKRK+FLGPS+FHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSC
Sbjct: 60  PYKGPLTDEIFQKRKKFLGPSLFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSC 119

Query: 111 GHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANEL 170
           GHCHPDVL A+ EQ+KLLQHATTIYLHH IADFAEALA KMPGNLKVVYFVNSGTEANEL
Sbjct: 120 GHCHPDVLAAVNEQNKLLQHATTIYLHHGIADFAEALAEKMPGNLKVVYFVNSGTEANEL 179

Query: 171 AMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFG 230
           AMLMARL +GNLGMIALRNAYHGGSS TIGLTALNTWKYPIPQGEIHHVVNPDPY G FG
Sbjct: 180 AMLMARLYSGNLGMIALRNAYHGGSSNTIGLTALNTWKYPIPQGEIHHVVNPDPYRGVFG 239

Query: 231 SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA 290
           SDA+ Y +D+Q+HID+GTSGKVAGFIAETIQGVGGAVELAPGYLK VYDIVR AGGVCIA
Sbjct: 240 SDASGYVKDVQEHIDYGTSGKVAGFIAETIQGVGGAVELAPGYLKHVYDIVRNAGGVCIA 299

Query: 291 DEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNT 350
           DEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIA+ MAQKIQFNT
Sbjct: 300 DEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIASTMAQKIQFNT 359

Query: 351 FGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM 410
           FGGNPVCSAGGLAVLRVID+ERRQAHCADVGSHLL RLR LQE+++IIGDVRGRGLMVG+
Sbjct: 360 FGGNPVCSAGGLAVLRVIDRERRQAHCADVGSHLLERLRALQEKYEIIGDVRGRGLMVGV 419

Query: 411 ELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDAL 470
           ELVTDRKEKTPAK ETAVLFEKLRELG+LVGKGGLHGNVFRIKPPMCFTKDDADFLVDAL
Sbjct: 420 ELVTDRKEKTPAKTETAVLFEKLRELGILVGKGGLHGNVFRIKPPMCFTKDDADFLVDAL 479

Query: 471 DYSMSKL 477
           DYS+SKL
Sbjct: 480 DYSISKL 486

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438605|ref|XP_002276566.1| PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Vitis vinifera] gi|296082478|emb|CBI21483.3| unnamed protein product [Vitis vinifera]

 Score =  848 bits (2192), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/477 (84%), Positives = 443/477 (92%), Gaps = 5/477 (1%)

Query: 1   MAFLQRQILKRTVKESKAKLNICTSFSTAASASAVATTPPQLPPFDHDPKPYTGPSADQV 60
           MAF +R ++   +K SK+ L++   + +  + SA    PP LP FDH PKPYTGP AD+V
Sbjct: 1   MAF-RRALISTALKRSKSDLHLHRRWLSGGAVSA----PPVLPAFDHQPKPYTGPLADEV 55

Query: 61  FQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNA 120
            QKRK+FLG S+F+YYQKP+N+VEGKMQYLFDENG+RYLDAFAGIVTVSCGHCHP++LNA
Sbjct: 56  LQKRKKFLGSSLFYYYQKPVNVVEGKMQYLFDENGKRYLDAFAGIVTVSCGHCHPEILNA 115

Query: 121 IFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTG 180
           I EQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSG+EANELAMLMARL +G
Sbjct: 116 IIEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGSEANELAMLMARLYSG 175

Query: 181 NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDL 240
           NLGMI+LRNAYHGGSSGTIGLTALNTWKY IP+GEIHHVVNPDPY G FGSDA+ YA+DL
Sbjct: 176 NLGMISLRNAYHGGSSGTIGLTALNTWKYSIPEGEIHHVVNPDPYRGIFGSDASSYARDL 235

Query: 241 QDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRT 300
           +DHID+GTSGKVAGFI+ETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRT
Sbjct: 236 KDHIDYGTSGKVAGFISETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRT 295

Query: 301 GSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAG 360
           GSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIA+V+AQKIQFNTFGGNPVCSAG
Sbjct: 296 GSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIADVLAQKIQFNTFGGNPVCSAG 355

Query: 361 GLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKT 420
           GLAVLRV+DKE+RQ HCADVGSHL+ RLR LQ++HDIIGDVRGRGLMVG+ELVTDRKEKT
Sbjct: 356 GLAVLRVLDKEKRQEHCADVGSHLIERLRALQQKHDIIGDVRGRGLMVGVELVTDRKEKT 415

Query: 421 PAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477
           PAKAETAVLFE LRE+G+L+GKGGLHGNVFRIKPPMCFTKDDADFLVDALDYS+SKL
Sbjct: 416 PAKAETAVLFENLREIGILIGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSISKL 472

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525521|ref|XP_003531373.1| PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial-like [Glycine max]

 Score =  842 bits (2176), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/478 (84%), Positives = 441/478 (92%), Gaps = 4/478 (0%)

Query: 1   MAFLQRQILKRTVKESKAKLNIC-TSFSTAASASAVATTPPQLPPFDHDPKPYTGPSADQ 59
           MA +QR  LKRT+  + AKL  C +S   AA+A  VA+ PPQLPPFDH P PY GP AD+
Sbjct: 1   MAAMQRP-LKRTI--AIAKLRACFSSLRPAAAADIVASPPPQLPPFDHQPHPYNGPFADE 57

Query: 60  VFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLN 119
           V  KRK FLGPS+FHYY+KPLNIVEGKMQYL+D++GRRYLDAFAGIVTVSCGHCHP++LN
Sbjct: 58  VLAKRKTFLGPSVFHYYKKPLNIVEGKMQYLYDDSGRRYLDAFAGIVTVSCGHCHPEILN 117

Query: 120 AIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLST 179
           AI EQSKLLQHATTIYLHH I DFAE+LA+KMPGNLKVVYFVNSG+EANELAM+MARL T
Sbjct: 118 AITEQSKLLQHATTIYLHHTIGDFAESLAAKMPGNLKVVYFVNSGSEANELAMMMARLYT 177

Query: 180 GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQD 239
           G+LGMI+LRNAYHGGSS T+GLTALNTWKYPIP+G +HHV+NPDPY G+FG+DAA YA D
Sbjct: 178 GSLGMISLRNAYHGGSSSTLGLTALNTWKYPIPEGHVHHVMNPDPYRGAFGADAASYAND 237

Query: 240 LQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGR 299
           +QDHID+GTSGKVAGFIAET+QGVGGAVELAPGYLKLVYDI+ KAGGVCIADEVQTGFGR
Sbjct: 238 VQDHIDYGTSGKVAGFIAETMQGVGGAVELAPGYLKLVYDIIHKAGGVCIADEVQTGFGR 297

Query: 300 TGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSA 359
           TGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIA+V+AQKIQFNTFGGNPVCSA
Sbjct: 298 TGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIASVLAQKIQFNTFGGNPVCSA 357

Query: 360 GGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEK 419
           GGLAVLRV+DKE+RQAHCADVGSHLL RLR L ERHDIIG+VRGRGLMVG+ELVTDR  K
Sbjct: 358 GGLAVLRVLDKEKRQAHCADVGSHLLERLRFLMERHDIIGNVRGRGLMVGIELVTDRDNK 417

Query: 420 TPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477
           TPAKAETAV+FEKLRELGVLVGKGGLHGNVFRIKPPMCF+KDDADFLVDALDYS+SKL
Sbjct: 418 TPAKAETAVVFEKLRELGVLVGKGGLHGNVFRIKPPMCFSKDDADFLVDALDYSLSKL 475

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512734|ref|XP_003525071.1| PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial-like [Glycine max]

 Score =  838 bits (2166), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/478 (84%), Positives = 442/478 (92%), Gaps = 2/478 (0%)

Query: 1   MAFLQRQILKRTVKESKAKLNICTSFSTAASASAVATT-PPQLPPFDHDPKPYTGPSADQ 59
           MA +QR  LKRT+  +K +    +   +AA+A+A  T  PPQLPPFDH P PY GPSAD+
Sbjct: 1   MAAMQRP-LKRTIAIAKQRACFSSLLPSAAAAAAADTVAPPQLPPFDHQPHPYNGPSADE 59

Query: 60  VFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLN 119
           VF KRK FLGPS+FHYY+KPLNIVEGKMQYL+D++GRRYLDAFAGIVTVSCGHCHP++LN
Sbjct: 60  VFAKRKTFLGPSVFHYYKKPLNIVEGKMQYLYDDSGRRYLDAFAGIVTVSCGHCHPEILN 119

Query: 120 AIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLST 179
           AI EQSKLLQHATTIYLHH I DFAEALA+KMPGNLKVVYFVNSG+EANELAM+MARL T
Sbjct: 120 AITEQSKLLQHATTIYLHHTIGDFAEALAAKMPGNLKVVYFVNSGSEANELAMMMARLYT 179

Query: 180 GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQD 239
           GNLGMI+LRNAYHGGSS T+GLTALN+WKYPIP+G +HHV+NPDPYHG+FG+DAA YA D
Sbjct: 180 GNLGMISLRNAYHGGSSSTLGLTALNSWKYPIPEGHVHHVMNPDPYHGAFGTDAASYAND 239

Query: 240 LQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGR 299
           +QDHID+GTSGKVAGFIAE+IQGVGGAVELAPGYLKLVYDI+ KAGGVCIADEVQTGFGR
Sbjct: 240 VQDHIDYGTSGKVAGFIAESIQGVGGAVELAPGYLKLVYDIIHKAGGVCIADEVQTGFGR 299

Query: 300 TGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSA 359
           TGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIA+VMAQKIQFNTFGGNPVCSA
Sbjct: 300 TGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIASVMAQKIQFNTFGGNPVCSA 359

Query: 360 GGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEK 419
           GGLAVLRV+DKE+RQAHCADVGS+LL RLR L ERHDIIG+VRGRGLMVG+ELVTDR  K
Sbjct: 360 GGLAVLRVLDKEKRQAHCADVGSYLLERLRFLMERHDIIGNVRGRGLMVGLELVTDRTNK 419

Query: 420 TPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477
           TPAKAETAV+FEKLRELGVLVGKGGLHGNVFRIKPPMCF+KDDADFLVDALDYS+SKL
Sbjct: 420 TPAKAETAVVFEKLRELGVLVGKGGLHGNVFRIKPPMCFSKDDADFLVDALDYSLSKL 477

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519613|ref|XP_003630095.1| Alanine-glyoxylate aminotransferase-like protein [Medicago truncatula] gi|217074458|gb|ACJ85589.1| unknown [Medicago truncatula] gi|355524117|gb|AET04571.1| Alanine-glyoxylate aminotransferase-like protein [Medicago truncatula]

 Score =  835 bits (2157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/482 (84%), Positives = 441/482 (91%), Gaps = 6/482 (1%)

Query: 1   MAFLQRQILKRTVKESKAKLNICTSFSTAASASAVATTPPQLPP-----FDHDPKPYTGP 55
           MA LQ  +LKRT K +++ L  C  FS+  S+SA AT     PP     FDH P PY GP
Sbjct: 1   MAALQ-SLLKRTTKPNRSDLLACRPFSSLRSSSATATQTITTPPPQIPPFDHQPHPYYGP 59

Query: 56  SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHP 115
           SAD+VF KRKQFLGPS+FH+YQKPLNIVEGKMQYL+DE GRRYLDAFAGIVTVS GHCHP
Sbjct: 60  SADEVFSKRKQFLGPSLFHFYQKPLNIVEGKMQYLYDEAGRRYLDAFAGIVTVSAGHCHP 119

Query: 116 DVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMA 175
           D+LNAIFEQSKLLQHATTIYLHHAIADFAEALA+KMPGNLKVVYFVNSG+EANELAMLMA
Sbjct: 120 DILNAIFEQSKLLQHATTIYLHHAIADFAEALAAKMPGNLKVVYFVNSGSEANELAMLMA 179

Query: 176 RLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAAR 235
           RL TGNLGMI+LRNAYHGGSS T+GLTALNTWKYP+P+GEIHHV+NPDPY G FG+DA  
Sbjct: 180 RLYTGNLGMISLRNAYHGGSSSTMGLTALNTWKYPLPEGEIHHVMNPDPYRGVFGADADS 239

Query: 236 YAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT 295
           YA+D+QDHID+GTSGKVAGFIAETIQGVGGAVEL PGYLK VYDIV KAGGVCIADEVQT
Sbjct: 240 YAKDVQDHIDYGTSGKVAGFIAETIQGVGGAVELVPGYLKNVYDIVHKAGGVCIADEVQT 299

Query: 296 GFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNP 355
           GFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIA+VMAQKIQFNTFGGNP
Sbjct: 300 GFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIASVMAQKIQFNTFGGNP 359

Query: 356 VCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTD 415
           VCSAGGLAVL+V+D E+RQAHCADVGSHLL RLR+LQ+RHDIIGDVRGRGLM+G+ELVTD
Sbjct: 360 VCSAGGLAVLKVLDNEKRQAHCADVGSHLLERLRSLQQRHDIIGDVRGRGLMLGVELVTD 419

Query: 416 RKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMS 475
           +K KTPAKAETAVLFEKLRELG+LVGKGGLHGNVFRIKPPMCF+KDDADFLVDALDYSM+
Sbjct: 420 QKNKTPAKAETAVLFEKLRELGILVGKGGLHGNVFRIKPPMCFSKDDADFLVDALDYSMT 479

Query: 476 KL 477
           KL
Sbjct: 480 KL 481

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449521627|ref|XP_004167831.1| PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial-like [Cucumis sativus]

 Score =  833 bits (2153), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/440 (89%), Positives = 419/440 (95%)

Query: 38  TPPQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRR 97
           + P LPPFD++P+PY GP  D++FQKRK+FLGPS+FHYYQKPLNIVEGKMQYLFDENGRR
Sbjct: 6   SKPVLPPFDYEPRPYKGPLTDEIFQKRKKFLGPSLFHYYQKPLNIVEGKMQYLFDENGRR 65

Query: 98  YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKV 157
           YLDAFAGIVTVSCGHCHPDVL A+ EQ+KLLQHATTIYLHH IADFAEALA KMPGNLKV
Sbjct: 66  YLDAFAGIVTVSCGHCHPDVLAAVNEQNKLLQHATTIYLHHGIADFAEALAEKMPGNLKV 125

Query: 158 VYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIH 217
           VYFVNSGTEANELAMLMARL +GNLGMIALRNAYHGGSS TIGLTALNTWKYPIPQGEIH
Sbjct: 126 VYFVNSGTEANELAMLMARLYSGNLGMIALRNAYHGGSSNTIGLTALNTWKYPIPQGEIH 185

Query: 218 HVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLV 277
           HVVNPDPY G FGSDA+ Y +D+Q+HID+GTSGKVAGFIAETIQGVGGAVELAPGYLK V
Sbjct: 186 HVVNPDPYRGVFGSDASGYVKDVQEHIDYGTSGKVAGFIAETIQGVGGAVELAPGYLKHV 245

Query: 278 YDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPE 337
           YDIVR AGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPE
Sbjct: 246 YDIVRNAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPE 305

Query: 338 IANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDI 397
           IA+ MAQKIQFNTFGGNPVCSAGGLAVLRVID+ERRQAHCADVGSHLL RLR LQE+++I
Sbjct: 306 IASTMAQKIQFNTFGGNPVCSAGGLAVLRVIDRERRQAHCADVGSHLLERLRALQEKYEI 365

Query: 398 IGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMC 457
           IGDVRGRGLMVG+ELVTDRKEKTPAK ETAVLFEKLRELG+LVGKGGLHGNVFRIKPPMC
Sbjct: 366 IGDVRGRGLMVGVELVTDRKEKTPAKTETAVLFEKLRELGILVGKGGLHGNVFRIKPPMC 425

Query: 458 FTKDDADFLVDALDYSMSKL 477
           FTKDDADFLVDALDYS+SKL
Sbjct: 426 FTKDDADFLVDALDYSISKL 445

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797980|ref|XP_002866874.1| hypothetical protein ARALYDRAFT_490746 [Arabidopsis lyrata subsp. lyrata] gi|297312710|gb|EFH43133.1| hypothetical protein ARALYDRAFT_490746 [Arabidopsis lyrata subsp. lyrata]

 Score =  828 bits (2139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/474 (81%), Positives = 436/474 (91%)

Query: 4   LQRQILKRTVKESKAKLNICTSFSTAASASAVATTPPQLPPFDHDPKPYTGPSADQVFQK 63
           LQRQ+LKR       +  I    +  +++ ++A  PPQ+PPFD+ P+PY GPSAD+VFQK
Sbjct: 3   LQRQLLKRASSGIYHRREISLLRADFSTSPSIADAPPQIPPFDYQPRPYKGPSADEVFQK 62

Query: 64  RKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFE 123
           RK+FLGPS+FH+YQKPLNIVEGKMQYLFDE+GRRYLDAFAGIVTVSCGHCHP++LNAI E
Sbjct: 63  RKKFLGPSLFHFYQKPLNIVEGKMQYLFDESGRRYLDAFAGIVTVSCGHCHPEILNAIVE 122

Query: 124 QSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG 183
           QSKLLQHATTIYLHHAI DFAEALA+KMPGNLKVVYFVNSG+EANELAM+MARL TG+L 
Sbjct: 123 QSKLLQHATTIYLHHAIGDFAEALAAKMPGNLKVVYFVNSGSEANELAMMMARLYTGSLE 182

Query: 184 MIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDH 243
           MI+LRNAYHGGSS TIGLTALNTWKYP+PQGEIHHVVNPDPY G FGSD + YA+D++DH
Sbjct: 183 MISLRNAYHGGSSNTIGLTALNTWKYPLPQGEIHHVVNPDPYRGVFGSDGSLYAKDVKDH 242

Query: 244 IDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH 303
           I++GTSGKVAGFIAETIQGVGGAVELAPGYLK VY+IVR AGGVCIADEVQTGFGRTGSH
Sbjct: 243 IEYGTSGKVAGFIAETIQGVGGAVELAPGYLKSVYEIVRNAGGVCIADEVQTGFGRTGSH 302

Query: 304 YWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLA 363
           YWGF+TQ V+PDIVTMAKGIGNGLPLGAVVTTPEIA+V+A KI FNTFGGNPVCSAGGLA
Sbjct: 303 YWGFQTQDVVPDIVTMAKGIGNGLPLGAVVTTPEIASVLASKILFNTFGGNPVCSAGGLA 362

Query: 364 VLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAK 423
           VL VIDKE+RQ HCA+VGSHL+ RL+ LQ+RHDIIGDVRGRGLMVG+ELV+DRK+KTPAK
Sbjct: 363 VLNVIDKEKRQEHCAEVGSHLIQRLKDLQKRHDIIGDVRGRGLMVGIELVSDRKDKTPAK 422

Query: 424 AETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477
           AETAVLFE+LRELG+LVGKGGLHGNVFRIKPPMCFTKDDADFLV+ALDYS+S+L
Sbjct: 423 AETAVLFEQLRELGILVGKGGLHGNVFRIKPPMCFTKDDADFLVNALDYSISRL 476

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517067|gb|AFK46595.1| unknown [Medicago truncatula]

 Score =  828 bits (2138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/482 (83%), Positives = 438/482 (90%), Gaps = 6/482 (1%)

Query: 1   MAFLQRQILKRTVKESKAKLNICTSFSTAASASAVATTPPQLPP-----FDHDPKPYTGP 55
           MA LQ  +LKRT K +++ L  C  FS+  S+SA AT     PP     FDH P PY GP
Sbjct: 1   MAALQ-SLLKRTTKPNRSDLLACRPFSSLRSSSATATQTITTPPPQIPPFDHQPHPYYGP 59

Query: 56  SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHP 115
           SAD+VF KRKQFLGPS+FH+YQKPLNIVEGKMQYL+DE GRRYLDAFAGIVTVS GHCHP
Sbjct: 60  SADEVFSKRKQFLGPSLFHFYQKPLNIVEGKMQYLYDEAGRRYLDAFAGIVTVSAGHCHP 119

Query: 116 DVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMA 175
           D+LNAIF QSKLLQHATTIYLHHAIADFAEALA+KMPGNLKVVYFVNSG+EANELAMLMA
Sbjct: 120 DILNAIFGQSKLLQHATTIYLHHAIADFAEALAAKMPGNLKVVYFVNSGSEANELAMLMA 179

Query: 176 RLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAAR 235
           RL TGNLGMI+LRNAYHGGSS T+GLTALNTWKYP+P+GEIHHV+NPDPY G FG+DA  
Sbjct: 180 RLYTGNLGMISLRNAYHGGSSSTMGLTALNTWKYPLPEGEIHHVMNPDPYRGVFGADADS 239

Query: 236 YAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT 295
           YA+D+QDHID+GTSGKVAGFIAETIQGVGGAVEL PGYLK VYDIV KAGGVCIADEVQT
Sbjct: 240 YAKDVQDHIDYGTSGKVAGFIAETIQGVGGAVELVPGYLKNVYDIVHKAGGVCIADEVQT 299

Query: 296 GFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNP 355
           GFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIA+VMAQKIQFNTFGGNP
Sbjct: 300 GFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIASVMAQKIQFNTFGGNP 359

Query: 356 VCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTD 415
           VCSAGGLAVL+V+D E+RQAHCADVGSHLL RLR+LQ+RHDIIGDVRGRGLM+G+ELVTD
Sbjct: 360 VCSAGGLAVLKVLDNEKRQAHCADVGSHLLERLRSLQQRHDIIGDVRGRGLMLGVELVTD 419

Query: 416 RKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMS 475
           +K KTPAKAETAVLFEKLRELG+LVGKGGLHGNVFRIKPPMCF+KDDADF VDALDY M+
Sbjct: 420 QKNKTPAKAETAVLFEKLRELGILVGKGGLHGNVFRIKPPMCFSKDDADFFVDALDYFMT 479

Query: 476 KL 477
           KL
Sbjct: 480 KL 481

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5731259|gb|AAD48837.1|AF166351_1 alanine:glyoxylate aminotransferase 2 homolog [Arabidopsis thaliana]

 Score =  827 bits (2135), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/477 (82%), Positives = 435/477 (91%), Gaps = 6/477 (1%)

Query: 4   LQRQILKRTVKESKAKLNIC---TSFSTAASASAVATTPPQLPPFDHDPKPYTGPSADQV 60
           LQRQ+LKR   +   +  I    T FST+ S   +A  PP +PPF H P+PY GPSAD+V
Sbjct: 3   LQRQLLKRATSDIYHRRAISLLRTDFSTSPS---IADAPPHIPPFVHQPRPYKGPSADEV 59

Query: 61  FQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNA 120
            QKRK+FLGPS+FHYYQKPLNIVEGKMQYL+DE+GRRYLDAFAGIVTVSCGHCHPD+LNA
Sbjct: 60  LQKRKKFLGPSLFHYYQKPLNIVEGKMQYLYDESGRRYLDAFAGIVTVSCGHCHPDILNA 119

Query: 121 IFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTG 180
           I EQSKLLQHATTIYLHHAI DFAEALA+KMPGNLKVVYFVNSG+EANELAM+MARL TG
Sbjct: 120 ITEQSKLLQHATTIYLHHAIGDFAEALAAKMPGNLKVVYFVNSGSEANELAMMMARLYTG 179

Query: 181 NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDL 240
           +L MI+LRNAYHGGSS TIGLTALNTWKYP+PQGEIHHVVNPDPY G FGSD + YA+D+
Sbjct: 180 SLEMISLRNAYHGGSSNTIGLTALNTWKYPLPQGEIHHVVNPDPYRGVFGSDGSLYAKDV 239

Query: 241 QDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRT 300
           QDHI++GTSGKVAGFIAETIQGVGGAVELAPGYLK VY+IVR AGGVCIADEVQTGFGRT
Sbjct: 240 QDHIEYGTSGKVAGFIAETIQGVGGAVELAPGYLKSVYEIVRNAGGVCIADEVQTGFGRT 299

Query: 301 GSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAG 360
           GSHYWGF+TQ V+PDIVTMAKGIGNGLPLGAVVTTPEIA+V+A KI FNTFGGNPVCSAG
Sbjct: 300 GSHYWGFQTQDVVPDIVTMAKGIGNGLPLGAVVTTPEIASVLASKILFNTFGGNPVCSAG 359

Query: 361 GLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKT 420
           GLAVL VIDKE+RQ HCA+VGSHL+ RL+ +Q+RHDIIGDVRGRGLMVG+ELV+DRK+KT
Sbjct: 360 GLAVLNVIDKEKRQEHCAEVGSHLIQRLKDVQKRHDIIGDVRGRGLMVGIELVSDRKDKT 419

Query: 421 PAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477
           PAKAET+VLFE+LRELG+LVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYS+S+L
Sbjct: 420 PAKAETSVLFEQLRELGILVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSISRL 476

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	477
TAIR|locus:2135237	476	AGT2 "alanine:glyoxylate amino	0.993	0.995	0.784	4.2e-205
TAIR|locus:2097623	481	PYD4 "PYRIMIDINE 4" [Arabidops	0.918	0.910	0.623	8e-156
FB|FBgn0037186	518	CG11241 [Drosophila melanogast	0.519	0.478	0.472	3e-112
UNIPROTKB|F1NQJ1	479	AGXT2 "Uncharacterized protein	0.507	0.505	0.485	7.1e-109
ZFIN|ZDB-GENE-050913-100	517	agxt2 "alanine-glyoxylate amin	0.501	0.462	0.487	1.9e-108
UNIPROTKB|Q9BYV1	514	AGXT2 "Alanine--glyoxylate ami	0.507	0.470	0.463	3.6e-101
UNIPROTKB|E2QZD7	514	AGXT2 "Uncharacterized protein	0.490	0.455	0.474	4.6e-101
UNIPROTKB|Q17QF0	514	AGXT2 "Alanine--glyoxylate ami	0.490	0.455	0.470	2.6e-98
WB|WBGene00020382	444	T09B4.8 [Caenorhabditis elegan	0.501	0.538	0.495	3.3e-98
UNIPROTKB|F1MLG7	514	AGXT2 "Alanine--glyoxylate ami	0.490	0.455	0.470	5.3e-98

TAIR|locus:2135237 AGT2 "alanine:glyoxylate aminotransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1984 (703.5 bits), Expect = 4.2e-205, P = 4.2e-205
 Identities = 372/474 (78%), Positives = 412/474 (86%)

Query:     4 LQRQILKRTVKESKAKLNICXXXXXXXXXXXXXXXPPQLPPFDHDPKPYTGPSADQVFQK 63
             LQRQ+LKR   +   +  I                PP +PPF H P+PY GPSAD+V QK
Sbjct:     3 LQRQLLKRATSDIYHRRAISLLRTDFSTSPSIADAPPHIPPFVHQPRPYKGPSADEVLQK 62

Query:    64 RKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFE 123
             RK+FLGPS+FHYYQKPLNIVEGKMQYL+DE+GRRYLDAFAGIVTVSCGHCHPD+LNAI E
Sbjct:    63 RKKFLGPSLFHYYQKPLNIVEGKMQYLYDESGRRYLDAFAGIVTVSCGHCHPDILNAITE 122

Query:   124 QSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG 183
             QSKLLQHATTIYLHHAI DFAEALA+KMPGNLKVVYFVNSG+EANELAM+MARL TG+L 
Sbjct:   123 QSKLLQHATTIYLHHAIGDFAEALAAKMPGNLKVVYFVNSGSEANELAMMMARLYTGSLE 182

Query:   184 MIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDH 243
             MI+LRNAYHGGSS TIGLTALNTWKYP+PQGEIHHVVNPDPY G FGSD + YA+D+ DH
Sbjct:   183 MISLRNAYHGGSSNTIGLTALNTWKYPLPQGEIHHVVNPDPYRGVFGSDGSLYAKDVHDH 242

Query:   244 IDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH 303
             I++GTSGKVAGFIAETIQGVGGAVELAPGYLK VY+IVR AGGVCIADEVQTGFGRTGSH
Sbjct:   243 IEYGTSGKVAGFIAETIQGVGGAVELAPGYLKSVYEIVRNAGGVCIADEVQTGFGRTGSH 302

Query:   304 YWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLA 363
             YWGF+TQ V+PDIVTMAKGIGNGLPLGAVVTTPEIA+V+A KI FNTFGGNPVCSAGGLA
Sbjct:   303 YWGFQTQDVVPDIVTMAKGIGNGLPLGAVVTTPEIASVLASKILFNTFGGNPVCSAGGLA 362

Query:   364 VLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAK 423
             VL VIDKE+RQ HCA+VGSHL+ RL+ +Q+RHDIIGDVRGRGLMVG+ELV+DRK+KTPAK
Sbjct:   363 VLNVIDKEKRQEHCAEVGSHLIQRLKDVQKRHDIIGDVRGRGLMVGIELVSDRKDKTPAK 422

Query:   424 AETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDALDYSMSKL 477
             AET+VLFE+LRE              FRIKPPMCFTKDDADFLVDALDYS+S+L
Sbjct:   423 AETSVLFEQLRELGILVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSISRL 476

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=ISS;IDA

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019544 "arginine catabolic process to glutamate" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

TAIR|locus:2097623 PYD4 "PYRIMIDINE 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1519 (539.8 bits), Expect = 8.0e-156, P = 8.0e-156
 Identities = 273/438 (62%), Positives = 347/438 (79%)

Query:    40 PQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYL 99
             P++PPF++ P PY GPS  ++  KR++FL P++FH+Y  PLNIVE KMQY+FDENGRRYL
Sbjct:    44 PKMPPFNYSPPPYDGPSTAEIIAKRREFLSPALFHFYNTPLNIVEAKMQYVFDENGRRYL 103

Query:   100 DAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVY 159
             DAF GI TVSCGHCHP+V+N++ +Q KL+ H+T +YL+H I+DFAEAL S +PG+LKVV+
Sbjct:   104 DAFGGIATVSCGHCHPEVVNSVVKQLKLINHSTILYLNHTISDFAEALVSTLPGDLKVVF 163

Query:   160 FVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHV 219
             F NSGTEANELAM+MARL TG   +++LRN+YHG ++ T+G TA + WK+ + Q  +HH 
Sbjct:   164 FTNSGTEANELAMMMARLYTGCNDIVSLRNSYHGNAAATMGATAQSNWKFNVVQSGVHHA 223

Query:   220 VNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYD 279
             +NPDPY G FGSD  +YA D+ D I FGTSG+VAGFI E+IQGVGG VELAPGYL   YD
Sbjct:   224 INPDPYRGIFGSDGEKYASDVHDLIQFGTSGQVAGFIGESIQGVGGIVELAPGYLPAAYD 283

Query:   280 IVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIA 339
             IVRKAGGVCIADEVQ+GF RTG+H+WGF++ GVIPDIVTMAKGIGNG+PLGAVVTTPEIA
Sbjct:   284 IVRKAGGVCIADEVQSGFARTGTHFWGFQSHGVIPDIVTMAKGIGNGIPLGAVVTTPEIA 343

Query:   340 NVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIG 399
              V++++  FNTFGGNP+C+A G AVLRV+ +E+ Q +   VGSHL  RL  L+ ++++IG
Sbjct:   344 GVLSRRSYFNTFGGNPMCTAAGHAVLRVLHEEKLQENANLVGSHLKRRLTLLKNKYELIG 403

Query:   400 DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFT 459
             DVRGRGLM+G+E V DR  KTPAKAET  L ++++E              FRI PP+CFT
Sbjct:   404 DVRGRGLMLGVEFVKDRDLKTPAKAETLHLMDQMKEMGVLVGKGGFYGNVFRITPPLCFT 463

Query:   460 KDDADFLVDALDYSMSKL 477
               DADFLVD +D++MSK+
Sbjct:   464 LSDADFLVDVMDHAMSKM 481

GO:0003824 "catalytic activity" evidence=IEA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=ISS

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0043562 "cellular response to nitrogen levels" evidence=IEP

GO:0007568 "aging" evidence=RCA

GO:0009830 "cell wall modification involved in abscission" evidence=RCA

FB|FBgn0037186 CG11241 [Drosophila melanogaster (taxid:7227)]

 Score = 594 (214.2 bits), Expect = 3.0e-112, Sum P(2) = 3.0e-112
 Identities = 121/256 (47%), Positives = 168/256 (65%)

Query:   227 GSFGSDAARYAQDLQDHIDFGTS-GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAG 285
             G    DA  Y  +L++   +    GKVA   AE+IQGVGG V+   GYLK    +VR  G
Sbjct:   253 GCQAGDA--YYNELEETFKYSLPRGKVAAMFAESIQGVGGTVQFPKGYLKRAAALVRANG 310

Query:   286 GVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK 345
             G+ +ADEVQTGFGRTG H+WGFE+   +PDIVTMAKGIGNG PL AVVTTPEIA  ++Q 
Sbjct:   311 GLFVADEVQTGFGRTGEHFWGFESHDYVPDIVTMAKGIGNGFPLAAVVTTPEIAASLSQA 370

Query:   346 IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG 405
             + FNT+GGNP+ SA G+AVL VI++E+ Q +  +VG++ L  L  LQ+R +IIGDVRG+G
Sbjct:   371 LHFNTYGGNPMASAVGIAVLDVIEEEQLQRNSLEVGTYFLKGLAELQQRFEIIGDVRGKG 430

Query:   406 LMVGMELVTDRKEKTP-AKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDAD 464
             LM+G+ELV +R+++TP A      ++EK ++                ++PP+C   +D +
Sbjct:   431 LMIGVELVGNREKRTPLATPHVLDIWEKCKDQGVLLGRGGLHGNVLSMRPPLCLCAEDVE 490

Query:   465 FLVDALD----YSMSK 476
             F ++ L+    + MSK
Sbjct:   491 FALETLEEAFKFHMSK 506

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|F1NQJ1 AGXT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 635 (228.6 bits), Expect = 7.1e-109, Sum P(2) = 7.1e-109
 Identities = 118/243 (48%), Positives = 166/243 (68%)

Query:   235 RYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQ 294
             +Y +  +D ++      +AGFIAE IQG+ GAV+   G+LK  Y +VR+ GGVCIADEVQ
Sbjct:   231 QYIEQFKDTLNTSVPKTIAGFIAEPIQGINGAVQYPKGFLKEAYRLVRERGGVCIADEVQ 290

Query:   295 TGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGN 354
             TGFGRTGSH+WGF+T  V+PDI+T+AKGIGNG P+ AVVTT EIAN +AQ + FNTFGGN
Sbjct:   291 TGFGRTGSHFWGFQTHDVVPDIITLAKGIGNGFPMAAVVTTKEIANSLAQNLHFNTFGGN 350

Query:   355 PVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVT 414
             P+    G AVL  I+++  Q +  DVG+++L  L  L+++ +I+GDVRG+GLM+G+E+VT
Sbjct:   351 PMACVVGSAVLDAIEEDSLQKNSKDVGTYMLLELAKLRDKFEIVGDVRGKGLMIGIEMVT 410

Query:   415 DRKEKTPAKAETA-VLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDALDYS 473
             D+  + P  AE    ++E  ++              FRIKPPMC T+ D DF V+ +  +
Sbjct:   411 DKDSRHPLPAEEINQIWEDCKDMGVLIGRGGLYNQTFRIKPPMCITRKDVDFAVEVIHTA 470

Query:   474 MSK 476
             + +
Sbjct:   471 LER 473

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IEA

GO:0009436 "glyoxylate catabolic process" evidence=IEA

GO:0019265 "glycine biosynthetic process, by transamination of glyoxylate" evidence=IEA

GO:0019481 "L-alanine catabolic process, by transamination" evidence=IEA

GO:0045429 "positive regulation of nitric oxide biosynthetic process" evidence=IEA

ZFIN|ZDB-GENE-050913-100 agxt2 "alanine-glyoxylate aminotransferase 2" [Danio rerio (taxid:7955)]

 Score = 618 (222.6 bits), Expect = 1.9e-108, Sum P(2) = 1.9e-108
 Identities = 117/240 (48%), Positives = 161/240 (67%)

Query:   236 YAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT 295
             Y ++L++  D     ++A F  E IQGVGGAV+    YLK  Y +VR+ GG+CIADEVQT
Sbjct:   271 YIKELKEVFDTTVPSRIAAFFTEPIQGVGGAVQYPKNYLKETYQLVREKGGICIADEVQT 330

Query:   296 GFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNP 355
             GFGRTGSH+WGFE   VIPD+VTMAKGI NG+P+GAVVTT EIA   A+ + FNTFGGNP
Sbjct:   331 GFGRTGSHFWGFEGHNVIPDMVTMAKGIANGIPMGAVVTTAEIARSFAKGVHFNTFGGNP 390

Query:   356 VCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTD 415
             +  A   +VL  I +++ Q + A++G++LL  L  L+++++IIGDVRG+GL +G+E+V D
Sbjct:   391 LACAIASSVLDTIKEDKMQENSAELGTYLLTELAKLRDKYEIIGDVRGKGLQIGVEMVKD 450

Query:   416 RKEKTPAKAETA-VLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDALDYSM 474
             +  +TP   E    +FE  ++              FRIKPPMC TK DADF +   + ++
Sbjct:   451 KASRTPLPQEAMNEIFEDTKDMGVLIGKGGLYGQTFRIKPPMCITKADADFFLSVFNQAV 510

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q9BYV1 AGXT2 "Alanine--glyoxylate aminotransferase 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 583 (210.3 bits), Expect = 3.6e-101, Sum P(2) = 3.6e-101
 Identities = 113/244 (46%), Positives = 158/244 (64%)

Query:   235 RYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQ 294
             +Y +  +D +    +  +AGF AE IQGV G V+   G+LK  +++VR  GGVCIADEVQ
Sbjct:   264 QYIEQFKDTLSTSVAKSIAGFFAEPIQGVNGVVQYPKGFLKEAFELVRARGGVCIADEVQ 323

Query:   295 TGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQ-FNTFGG 353
             TGFGR GSH+WGF+T  V+PDIVTMAKGIGNG P+ AV+TTPEIA  +A+ +Q FNTFGG
Sbjct:   324 TGFGRLGSHFWGFQTHDVLPDIVTMAKGIGNGFPMAAVITTPEIAKSLAKCLQHFNTFGG 383

Query:   354 NPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELV 413
             NP+  A G AVL VI +E  Q +  +VG+++L +   L++  +I+GDVRG+GLM+G+E+V
Sbjct:   384 NPMACAIGSAVLEVIKEENLQENSQEVGTYMLLKFAKLRDEFEIVGDVRGKGLMIGIEMV 443

Query:   414 TDRKEKTPA-KAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDALDY 472
              D+    P  + E   + E  +               FRI P MC TK + DF V+    
Sbjct:   444 QDKISCRPLPREEVNQIHEDCKHMGLLVGRGSIFSQTFRIAPSMCITKPEVDFAVEVFRS 503

Query:   473 SMSK 476
             ++++
Sbjct:   504 ALTQ 507

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0047305 "(R)-3-amino-2-methylpropionate-pyruvate transaminase activity" evidence=IEA

GO:0016223 "beta-alanine-pyruvate transaminase activity" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0006206 "pyrimidine nucleobase metabolic process" evidence=TAS

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IDA;TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046135 "pyrimidine nucleoside catabolic process" evidence=TAS

GO:0046487 "glyoxylate metabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0019265 "glycine biosynthetic process, by transamination of glyoxylate" evidence=IDA

GO:0019481 "L-alanine catabolic process, by transamination" evidence=IDA

GO:0009436 "glyoxylate catabolic process" evidence=IDA

GO:0045429 "positive regulation of nitric oxide biosynthetic process" evidence=IDA

UNIPROTKB|E2QZD7 AGXT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 599 (215.9 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
 Identities = 112/236 (47%), Positives = 157/236 (66%)

Query:   235 RYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQ 294
             +Y +  +D ++   +  +AGF AE IQGV G V+   G+LK  +++VR+ GG+CIADEVQ
Sbjct:   264 QYIEQFKDTLNSSVAKSIAGFFAEPIQGVNGVVQYPKGFLKEAFELVRERGGLCIADEVQ 323

Query:   295 TGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKI-QFNTFGG 353
             TGFGR GSH+WGF+T G++PDIVTMAKGIGNG P+ AVVTTPEIAN +A+ +  FNTFGG
Sbjct:   324 TGFGRLGSHFWGFQTHGILPDIVTMAKGIGNGFPMAAVVTTPEIANSLAKSVLHFNTFGG 383

Query:   354 NPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELV 413
             NP+  A G AVL VI +E  Q +  +VG+++L +   L++  +I+GDVRG+GLM+G+E+V
Sbjct:   384 NPIACAIGSAVLEVIKEENLQENSQEVGTYMLQKFAELRDEFEIVGDVRGKGLMIGIEMV 443

Query:   414 TDRKEKTPA-KAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVD 468
              D+  + P  + E   + +  +               FRI P MC TK D  F V+
Sbjct:   444 KDKMSRQPLPREEVNEIHDNCKRMGLLIGKGGIFAQTFRIAPSMCITKPDVKFAVE 499

GO:0045429 "positive regulation of nitric oxide biosynthetic process" evidence=IEA

GO:0019481 "L-alanine catabolic process, by transamination" evidence=IEA

GO:0019265 "glycine biosynthetic process, by transamination of glyoxylate" evidence=IEA

GO:0009436 "glyoxylate catabolic process" evidence=IEA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|Q17QF0 AGXT2 "Alanine--glyoxylate aminotransferase 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 582 (209.9 bits), Expect = 2.6e-98, Sum P(2) = 2.6e-98
 Identities = 111/236 (47%), Positives = 156/236 (66%)

Query:   235 RYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQ 294
             +Y +  +D +    +  +AGF AE IQGV G V+   G+LK  +++VR+ GGVCIADEVQ
Sbjct:   264 QYIEQFKDTLSTSVAKSIAGFFAEPIQGVNGVVQYPKGFLKEAFELVRERGGVCIADEVQ 323

Query:   295 TGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK-IQFNTFGG 353
             TGFGR GSH+WGF+T  V+PDIVTMAKGIGNG P+ AVVTTP+IA  + ++ + FNTFGG
Sbjct:   324 TGFGRLGSHFWGFQTHDVLPDIVTMAKGIGNGFPMAAVVTTPDIAKSLTKRMLHFNTFGG 383

Query:   354 NPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELV 413
             NP+  A G AVL VI +E  Q +  +VG+++L +L  L++  +I+GDVRG+GLM+G+E+V
Sbjct:   384 NPMACAVGSAVLEVIKEENLQENSQEVGTYMLLKLAKLRDEFEIVGDVRGKGLMIGIEMV 443

Query:   414 TDRKEKTPA-KAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVD 468
              D++ + P  + E   +    +               FRI P MC TK + DF V+
Sbjct:   444 KDKESRQPLPREEVNQIHHDCKCMGLLIGRGGLFSQTFRIAPSMCITKPEVDFAVE 499

GO:0005739 "mitochondrion" evidence=IEA

GO:0047305 "(R)-3-amino-2-methylpropionate-pyruvate transaminase activity" evidence=IEA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

WB|WBGene00020382 T09B4.8 [Caenorhabditis elegans (taxid:6239)]

 Score = 591 (213.1 bits), Expect = 3.3e-98, Sum P(2) = 3.3e-98
 Identities = 121/244 (49%), Positives = 159/244 (65%)

Query:   235 RYAQDLQDHI--DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADE 292
             +Y +   D +  DF  S   A F+ E+IQGVGG V+   GYLK  Y+ V+K GG+ IADE
Sbjct:   202 KYIEQFDDMLLHDFSHSSGPAAFLIESIQGVGGTVQYPHGYLKKSYESVQKRGGLAIADE 261

Query:   293 VQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFG 352
             VQTGFGR GSH+WGFE+Q  +PD+VTMAKGIGNG PLGAVVT+ EIA+   + + FNT+G
Sbjct:   262 VQTGFGRLGSHFWGFESQDALPDMVTMAKGIGNGFPLGAVVTSKEIADSFNKSLYFNTYG 321

Query:   353 GNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMEL 412
             GNP+ S  G AVL VI++E+ Q + A VG + L +L  + +    IGDVRG+GLM+G+EL
Sbjct:   322 GNPLASVVGKAVLEVIEEEKLQENSAVVGDYFLKQLAAIDDA--TIGDVRGKGLMIGVEL 379

Query:   413 VTDRKEKTPAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDALDY 472
             + D + K  A A+TA +FE  +                RIKPPMC TK D DF VD +  
Sbjct:   380 I-DEQGKPLAAAKTAAIFEDTKNQGLLIGKGGIHGNVLRIKPPMCITKKDVDFAVDIIAK 438

Query:   473 SMSK 476
             S+ +
Sbjct:   439 SIKQ 442

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019915 "lipid storage" evidence=IMP

UNIPROTKB|F1MLG7 AGXT2 "Alanine--glyoxylate aminotransferase 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 579 (208.9 bits), Expect = 5.3e-98, Sum P(2) = 5.3e-98
 Identities = 111/236 (47%), Positives = 155/236 (65%)

Query:   235 RYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQ 294
             +Y +  +D +    +  +AGF AE IQGV G V+   G+LK  +++VR+ GGVCIADEVQ
Sbjct:   264 QYIEQFKDTLSTSVAKSIAGFFAEPIQGVNGVVQYPKGFLKEAFELVRERGGVCIADEVQ 323

Query:   295 TGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK-IQFNTFGG 353
             TGFGR GSH+WGF+T  V+PDIVTMAKGIGNG P+ AVVTTP+IA  + ++ + FNTFGG
Sbjct:   324 TGFGRLGSHFWGFQTHDVLPDIVTMAKGIGNGFPMAAVVTTPDIAKSLTKRMLHFNTFGG 383

Query:   354 NPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELV 413
             NP+  A G AVL VI +E  Q +  +VG+++L +L  L++  +I+GDVRG+GLM+G+E+V
Sbjct:   384 NPMACAVGSAVLEVIKEENLQENSQEVGTYMLLKLAKLRDEFEIVGDVRGKGLMIGIEMV 443

Query:   414 TDRKEKTPA-KAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVD 468
              D++   P  + E   +    +               FRI P MC TK + DF V+
Sbjct:   444 KDKESHQPLPREEVNQIHHDCKCMGLLIGRGGLFSQTFRIAPSMCITKPEVDFAVE 499

GO:0045429 "positive regulation of nitric oxide biosynthetic process" evidence=IEA

GO:0019481 "L-alanine catabolic process, by transamination" evidence=IEA

GO:0019265 "glycine biosynthetic process, by transamination of glyoxylate" evidence=IEA

GO:0009436 "glyoxylate catabolic process" evidence=IEA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q940M2	AGT21_ARATH	2, ., 6, ., 1, ., 4, 4	0.8197	0.9874	0.9894	yes	no
P30268	Y2045_BACPE	2, ., 6, ., -, ., -	0.3165	0.8763	0.9393	yes	no
Q3UEG6	AGT2_MOUSE	2, ., 6, ., 1, ., 4, 0	0.4282	0.9748	0.9064	yes	no
Q5RFA3	AGT2_PONAB	2, ., 6, ., 1, ., 4, 0	0.4294	0.9685	0.8988	yes	no
P33189	YHXA_BACSU	2, ., 6, ., -, ., -	0.3493	0.8637	0.9155	yes	no
Q64565	AGT2_RAT	2, ., 6, ., 1, ., 4, 0	0.4245	0.9203	0.8574	yes	no
Q9BYV1	AGT2_HUMAN	2, ., 6, ., 1, ., 4, 0	0.4220	0.9979	0.9260	yes	no
Q9US34	YFZ7_SCHPO	2, ., 6, ., -, ., -	0.3106	0.8197	0.8727	yes	no
O27392	ARGD_METTH	2, ., 6, ., 1, ., 1, 1	0.3497	0.8029	0.9820	yes	no
Q17QF0	AGT2_BOVIN	2, ., 6, ., 1, ., 4, 0	0.4294	0.9454	0.8774	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.6.1	0.998
4th Layer	2.6.1.44	0.994
4th Layer	2.6.1.40	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	477
PRK06148	1013	PRK06148, PRK06148, hypothetical protein; Provisio	1e-164
COG0160	447	COG0160, GabT, 4-aminobutyrate aminotransferase an	1e-160
cd00610	413	cd00610, OAT_like, Acetyl ornithine aminotransfera	1e-148
PRK06149	972	PRK06149, PRK06149, hypothetical protein; Provisio	1e-128
COG4992	404	COG4992, ArgD, Ornithine/acetylornithine aminotran	1e-105
COG0161	449	COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon	1e-104
PRK02627	396	PRK02627, PRK02627, acetylornithine aminotransfera	1e-101
PRK08117	433	PRK08117, PRK08117, 4-aminobutyrate aminotransfera	1e-94
PRK05769	441	PRK05769, PRK05769, 4-aminobutyrate aminotransfera	6e-92
pfam00202	338	pfam00202, Aminotran_3, Aminotransferase class-III	4e-88
TIGR00707	379	TIGR00707, argD, transaminase, acetylornithine/suc	1e-87
PRK08360	443	PRK08360, PRK08360, 4-aminobutyrate aminotransfera	8e-86
PRK07678	451	PRK07678, PRK07678, aminotransferase; Validated	1e-79
PRK03244	398	PRK03244, argD, acetylornithine aminotransferase;	1e-79
PRK07481	449	PRK07481, PRK07481, hypothetical protein; Provisio	7e-76
PRK08593	445	PRK08593, PRK08593, 4-aminobutyrate aminotransfera	3e-75
PRK06062	451	PRK06062, PRK06062, hypothetical protein; Provisio	7e-75
PRK01278	389	PRK01278, argD, acetylornithine transaminase prote	3e-74
PRK02936	377	PRK02936, argD, acetylornithine aminotransferase;	4e-74
PRK07483	443	PRK07483, PRK07483, hypothetical protein; Provisio	1e-70
PRK07036	466	PRK07036, PRK07036, hypothetical protein; Provisio	1e-68
PRK06105	460	PRK06105, PRK06105, aminotransferase; Provisional	1e-67
PRK06058	443	PRK06058, PRK06058, 4-aminobutyrate aminotransfera	2e-67
PRK06917	447	PRK06917, PRK06917, hypothetical protein; Provisio	5e-67
TIGR00700	420	TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf	6e-65
PRK07480	456	PRK07480, PRK07480, putative aminotransferase; Val	1e-64
PRK07495	425	PRK07495, PRK07495, 4-aminobutyrate aminotransfera	2e-64
PRK11522	459	PRK11522, PRK11522, putrescine--2-oxoglutarate ami	3e-63
PRK06918	451	PRK06918, PRK06918, 4-aminobutyrate aminotransfera	4e-63
TIGR00508	417	TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon	4e-63
PRK06938	464	PRK06938, PRK06938, diaminobutyrate--2-oxoglutarat	1e-62
PRK08088	425	PRK08088, PRK08088, 4-aminobutyrate aminotransfera	3e-60
PRK07482	461	PRK07482, PRK07482, hypothetical protein; Provisio	8e-60
PLN00144	382	PLN00144, PLN00144, acetylornithine transaminase	1e-59
PRK06931	459	PRK06931, PRK06931, diaminobutyrate--2-oxoglutarat	2e-59
PRK06541	460	PRK06541, PRK06541, hypothetical protein; Provisio	9e-58
PRK06082	459	PRK06082, PRK06082, 4-aminobutyrate aminotransfera	9e-58
PTZ00125	400	PTZ00125, PTZ00125, ornithine aminotransferase-lik	3e-57
PRK05639	457	PRK05639, PRK05639, 4-aminobutyrate aminotransfera	3e-57
PRK05965	459	PRK05965, PRK05965, hypothetical protein; Provisio	1e-56
TIGR00709	442	TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase	2e-54
PRK06777	421	PRK06777, PRK06777, 4-aminobutyrate aminotransfera	3e-54
PRK04260	375	PRK04260, PRK04260, acetylornithine aminotransfera	1e-53
TIGR03246	397	TIGR03246, arg_catab_astC, succinylornithine trans	1e-52
TIGR01885	401	TIGR01885, Orn_aminotrans, ornithine aminotransfer	7e-52
PRK06916	460	PRK06916, PRK06916, adenosylmethionine--8-amino-7-	2e-51
PRK05093	403	PRK05093, argD, bifunctional N-succinyldiaminopime	4e-51
PRK04013	364	PRK04013, argD, acetylornithine/acetyl-lysine amin	1e-50
PRK12381	406	PRK12381, PRK12381, bifunctional succinylornithine	2e-49
PRK05964	423	PRK05964, PRK05964, adenosylmethionine--8-amino-7-	3e-49
PRK04612	408	PRK04612, argD, acetylornithine transaminase prote	9e-49
PRK00854	401	PRK00854, rocD, ornithine--oxo-acid transaminase;	3e-48
TIGR03372	442	TIGR03372, putres_am_tran, putrescine aminotransfe	1e-46
PRK09221	445	PRK09221, PRK09221, beta alanine--pyruvate transam	6e-46
PRK09792	421	PRK09792, PRK09792, 4-aminobutyrate transaminase;	1e-45
PLN02624	474	PLN02624, PLN02624, ornithine-delta-aminotransfera	6e-45
PRK04073	396	PRK04073, rocD, ornithine--oxo-acid transaminase;	4e-44
PRK13360	442	PRK13360, PRK13360, omega amino acid--pyruvate tra	2e-43
PRK03715	395	PRK03715, argD, acetylornithine transaminase prote	4e-43
PLN02760	504	PLN02760, PLN02760, 4-aminobutyrate:pyruvate trans	7e-41
PRK09264	425	PRK09264, PRK09264, diaminobutyrate--2-oxoglutarat	2e-40
PRK12403	460	PRK12403, PRK12403, putative aminotransferase; Pro	4e-40
TIGR02407	412	TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglu	1e-39
PRK07030	466	PRK07030, PRK07030, adenosylmethionine--8-amino-7-	2e-39
PRK08297	443	PRK08297, PRK08297, L-lysine aminotransferase; Pro	7e-37
PRK08742	472	PRK08742, PRK08742, adenosylmethionine--8-amino-7-	5e-36
COG0001	432	COG0001, HemL, Glutamate-1-semialdehyde aminotrans	3e-34
TIGR03251	431	TIGR03251, LAT_fam, L-lysine 6-transaminase	6e-34
PRK06943	453	PRK06943, PRK06943, adenosylmethionine--8-amino-7-	2e-31
TIGR00713	423	TIGR00713, hemL, glutamate-1-semialdehyde-2,1-amin	3e-30
PRK12389	428	PRK12389, PRK12389, glutamate-1-semialdehyde amino	4e-29
PRK05630	422	PRK05630, PRK05630, adenosylmethionine--8-amino-7-	1e-27
TIGR00699	464	TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotran	2e-26
PRK00062	426	PRK00062, PRK00062, glutamate-1-semialdehyde amino	1e-25
PRK06173	429	PRK06173, PRK06173, adenosylmethionine--8-amino-7-	9e-22
PRK07986	428	PRK07986, PRK07986, adenosylmethionine--8-amino-7-	3e-20
PLN02482	474	PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-a	7e-18
PRK00615	433	PRK00615, PRK00615, glutamate-1-semialdehyde amino	2e-16
PRK06209	431	PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-a	4e-14
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	2e-09
PLN02974	817	PLN02974, PLN02974, adenosylmethionine-8-amino-7-o	2e-06
PRK07046	453	PRK07046, PRK07046, aminotransferase; Validated	1e-04
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	2e-04

>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional

 Score =  489 bits (1260), Expect = e-164
 Identities = 199/432 (46%), Positives = 262/432 (60%), Gaps = 18/432 (4%)

Query: 52   YTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCG 111
             +G    ++ ++RK+ L P++   Y  P+  V G   +L D  GR YLD F  +  V  G
Sbjct: 580  QSGRDKAEILRERKEHLLPNLSISYSDPIKFVRGWGVWLIDNRGRAYLDCFNNVCHV--G 637

Query: 112  HCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELA 171
            H HP V+ A   Q+  L +  T YLH AI  +AE L + +P  L V +FVNSG+EAN LA
Sbjct: 638  HAHPRVVAAAARQAARL-NTNTRYLHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLA 696

Query: 172  MLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGE-----IHHVVNPDPYH 226
            + +AR  TG    I L +AYHG ++  I L+    +K+    G+     +     PD Y 
Sbjct: 697  LRLARAHTGQRDAIVLDHAYHGTTTELIDLSP---YKFNRKGGKGRPDHVEVAEVPDSYR 753

Query: 227  GSFGSD----AARYAQDLQDHID-FGTSG-KVAGFIAETIQGVGGAVELAPGYLKLVYDI 280
            G           R+A+ + + I      G   A FIAE+I  V G + L  GYL+ VY +
Sbjct: 754  GPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAM 813

Query: 281  VRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIAN 340
            VR AGGVCIADEVQ GFGR GSH+W FETQGV+PDIVTM K IGNG P+GAVVTT EIA+
Sbjct: 814  VRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGNGHPMGAVVTTREIAD 873

Query: 341  VMAQKIQ-FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIG 399
                 ++ FNTFGGNPV  A GLAVL +I+ E  Q +  ++G++LL  LR LQ+R DIIG
Sbjct: 874  SFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFDIIG 933

Query: 400  DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFT 459
            DVRG GL +G+ELVTDRK K PA A    +    RE G+L+G  G H NV +I+PP+ F+
Sbjct: 934  DVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVLKIRPPLIFS 993

Query: 460  KDDADFLVDALD 471
            + DAD L++ LD
Sbjct: 994  RADADHLLEVLD 1005

Length = 1013

>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

 Score =  460 bits (1185), Expect = e-160
 Identities = 177/443 (39%), Positives = 245/443 (55%), Gaps = 18/443 (4%)

Query: 42  LPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDA 101
           LP          GP A ++ ++R++ L  S +  ++ PL IV  +  YL+D +G  YLD 
Sbjct: 3   LPEEPDIVTEAPGPKALELIERREEALARS-YGRFRFPLVIVRAEGAYLYDVDGNEYLDF 61

Query: 102 FAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIA-DFAEALASKMPGN-LKVVY 159
            +GI  ++ GH HP V+ A+  Q   L H  T  L++    + AE L +  PG+ LK V+
Sbjct: 62  LSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVF 121

Query: 160 FVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY-----PIPQG 214
           F NSG EA E A+ +AR  TG  G+IA   A+HG + G + LT  +   Y     P+P  
Sbjct: 122 FGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTG-SKPPYKAGFGPLP-P 179

Query: 215 EIHHVVNPDPYHGSFGSD----AARYAQDLQDHIDFGTSG--KVAGFIAETIQGVGGAVE 268
            ++HV  P+PY   FG           + ++  +     G  +VA  I E IQG GG + 
Sbjct: 180 GVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIV 239

Query: 269 LAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLP 328
              G+LK +  + R+ G + IADEVQTGFGRTG   + FE  GV PDIVT+AK +G GLP
Sbjct: 240 PPKGFLKALRKLCREHGILLIADEVQTGFGRTG-KMFAFEHFGVEPDIVTLAKSLGGGLP 298

Query: 329 LGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRL 388
           L AVV   EI +         TFGGNPV  A  LAVL VI++E      A++G +L  RL
Sbjct: 299 LSAVVGRAEIMDWPPGG-HGGTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRL 357

Query: 389 RTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGN 448
             LQE+H +IGDVRG GLM+G+ELV DR  K P     A +  +  E G+L+   G HGN
Sbjct: 358 EELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCGPHGN 417

Query: 449 VFRIKPPMCFTKDDADFLVDALD 471
           V RI PP+  + ++ D  +D L+
Sbjct: 418 VLRILPPLTISDEELDEGLDILE 440

Length = 447

>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family

 Score =  428 bits (1102), Expect = e-148
 Identities = 170/416 (40%), Positives = 238/416 (57%), Gaps = 14/416 (3%)

Query: 64  RKQFLGPSIFHYY---QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNA 120
             +     ++H Y     PL IV  +  YL+D +G RYLD  +GI  ++ GH HP+V+ A
Sbjct: 1   LFERDRKVLWHGYTVRPYPLVIVRAEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEA 60

Query: 121 IFEQSKLLQHATTIYLHHAIAD-FAEALASKMPGNLKVVYFVNSGTEANELAMLMARLST 179
           + EQ   L H +  + ++  A   AE L +  P  L  V+FVNSGTEA E A+ +AR  T
Sbjct: 61  LKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAYT 120

Query: 180 GNLGMIALRNAYHGGSSGTIGLT--ALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYA 237
           G   +I+   AYHG + G + LT        +      + HV  P PY     ++ A   
Sbjct: 121 GRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHV--PYPYRYRPPAELADDL 178

Query: 238 QDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGF 297
           + L++ ++     +VA  I E IQG GG +   PGYLK + ++ RK G + IADEVQTGF
Sbjct: 179 EALEEALEEH-PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGF 237

Query: 298 GRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK--IQFNTFGGNP 355
           GRTG   + FE  GV PDIVT+ KG+G GLPLGAV+   EI +       +   TFGGNP
Sbjct: 238 GRTGKM-FAFEHFGVEPDIVTLGKGLGGGLPLGAVLGREEIMDAFPAGPGLHGGTFGGNP 296

Query: 356 VCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTD 415
           +  A  LAVL V+++E    + A++G +L  RLR L E+H ++GDVRGRGLM+G+ELV D
Sbjct: 297 LACAAALAVLEVLEEEGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKD 356

Query: 416 RKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALD 471
           R  K P K   A + +   E G+L+   G  GNV R+ PP+  T+++ D  +DALD
Sbjct: 357 RATKPPDKELAAKIIKAALERGLLLRPSG--GNVIRLLPPLIITEEEIDEGLDALD 410

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413

>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional

 Score =  395 bits (1016), Expect = e-128
 Identities = 195/462 (42%), Positives = 266/462 (57%), Gaps = 32/462 (6%)

Query: 27  STAASASAVATTPPQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGK 86
           S AA+  A+  +P  L     D  P   P A  +  +R         HYY  P  I  G 
Sbjct: 519 SQAAAWLALCPSPAPLLGLPCDAPP---PDAAALLARRDASFARVQKHYYADPPQIERGW 575

Query: 87  MQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH-AIADFAE 145
             +LFD  GR YLD     VTV  GH HP +  A   Q  LL   T    H+ A+A+F+E
Sbjct: 576 RHHLFDMAGRSYLDMVNN-VTV-LGHGHPRLAAAAARQWSLLN--TNSRFHYAAVAEFSE 631

Query: 146 ALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLT--- 202
            LA+  P  L  V+ VNSG+EAN+LA+ +A  ++G   ++++  AYHG +  T  ++   
Sbjct: 632 RLAALAPDGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSI 691

Query: 203 -----ALNT---WKYPIPQGEIHHVVNPDPYHGSF-GSD-AARYAQDLQDHID--FGTSG 250
                AL T   W        +H V +P+ Y G F G+D AA Y +D+   ++    +  
Sbjct: 692 ADNPQALETRPDW--------VHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGR 743

Query: 251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ 310
            +AGFI E + G  G + L PGYL+ VY  VR  GGVCIADEVQ G+GR G ++WGFE Q
Sbjct: 744 GLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQ 803

Query: 311 GVIPDIVTMAKGIGNGLPLGAVVTTPEIANVM-AQKIQFNTFGGNPVCSAGGLAVLRVID 369
           GV+PDI+TMAKG+GNG PLGAV+T  EIA  + A+   F++ GG+PV    G+AVL V+ 
Sbjct: 804 GVVPDIITMAKGMGNGHPLGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLR 863

Query: 370 KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVL 429
           +E+ Q +   VG HL  RL  L +RH +IG V G GL +G+ELV DR+   PA  ETA +
Sbjct: 864 EEKLQENARRVGDHLKARLEALADRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAI 923

Query: 430 FEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALD 471
            ++L ELGV++   G H N+ +IKPP+C  ++ ADF VD LD
Sbjct: 924 CDRLLELGVIMQPTGDHLNILKIKPPLCLDRESADFFVDMLD 965

Length = 972

>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

 Score =  319 bits (821), Expect = e-105
 Identities = 150/413 (36%), Positives = 224/413 (54%), Gaps = 37/413 (8%)

Query: 72  IFHYYQK-PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH 130
           +   Y + P+ IV G+  Y++D+ GR YLD  AGI   + GHCHP ++ A+ EQ++ L H
Sbjct: 17  LMPTYGRLPVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWH 76

Query: 131 ATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG---MIAL 187
            + ++ +   A+ AE L    P     V+F NSG EANE A+ +AR  TG+     +IA 
Sbjct: 77  VSNLFYNEPQAELAEKLVELSPF-ADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAF 135

Query: 188 RNAYHGGSSGTIGLTALNTWK---YPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHI 244
            N++HG + G +  T    ++    P+  G   HV    P+     +D       L+  I
Sbjct: 136 ENSFHGRTLGALSATGQPKYRKGFGPLLPG-FRHV----PF-----NDIE----ALEAAI 181

Query: 245 DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHY 304
           D       A  I E IQG GG +   P +LK + ++  + G + I DEVQTG GRTG   
Sbjct: 182 D----EDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTG-KL 236

Query: 305 WGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAV 364
           + +E  GV PDI+T+AK +G G P+GA++ T EIA+        +TFGGNP+  A  LAV
Sbjct: 237 FAYEHYGVEPDILTLAKALGGGFPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAV 296

Query: 365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKA 424
           L V+ +E    +  + G +LL RLR L+ R+ ++ +VRGRGLM+G+EL   ++       
Sbjct: 297 LEVLLEEGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIEL---KEPYRARDI 353

Query: 425 ETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477
                   LRE GVLV   G   NV R  PP+  T+++ D  +DAL+ +++  
Sbjct: 354 V-----RALREEGVLVLPAG--PNVIRFLPPLVITEEEIDEALDALERALAAA 399

Length = 404

>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

 Score =  318 bits (818), Expect = e-104
 Identities = 147/417 (35%), Positives = 211/417 (50%), Gaps = 31/417 (7%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL-H 137
           P  IV  +  YL D +GRRYLD  +G+  V+ GH  P++  AI +Q   L H       H
Sbjct: 27  PRVIVRAEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTH 86

Query: 138 HAIADFAEALASKMP-GNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRNA 190
               + AE LA   P G L  V+F +SG+EA E A+ MA       G       I+ RN 
Sbjct: 87  EPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNG 146

Query: 191 YHGGSSGTIGLTAL-----NTWKYPIPQGEIHHVVNPDPYHGSFGSD----AARYAQDLQ 241
           YHG + G + +          +   +P  E+ H+  P  Y   F  +     A  A +L+
Sbjct: 147 YHGDTLGAMSVGGPVALRHAFYDPLLP--EVLHLPAPYAYRRGFFGEGDEEFAEAADELE 204

Query: 242 DHIDFGTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRT 300
             I       +A FI E +  G GG +   PGYLK V +I  K G + IADEV TGFGRT
Sbjct: 205 ALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRT 264

Query: 301 GSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK--IQFN---TFGGN 354
           G   +  E  G++PDI+ +AKG+  G LPL AV+T+  I    +      F    T+ GN
Sbjct: 265 G-KMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGN 323

Query: 355 PVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVT 414
           P+  A  LA L ++++E      A++G++L   L+     H ++GDVRG GL+  +ELV 
Sbjct: 324 PLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVA 383

Query: 415 DRKEKTPAKAET-AVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDAL 470
           D+  KTP +A   A +     E G+L+      G+V  + PP+  T+++ D LVDAL
Sbjct: 384 DKATKTPFEARVGARVRAAALERGLLIRPL---GDVIYLMPPLIITREEIDELVDAL 437

Length = 449

>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional

 Score =  308 bits (791), Expect = e-101
 Identities = 142/413 (34%), Positives = 216/413 (52%), Gaps = 50/413 (12%)

Query: 72  IFHYYQK-PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH 130
           + + Y + P+  V G+   L+D++G+ YLD  AGI   + GHCHP ++ AI EQ+  L H
Sbjct: 14  LMNTYGRLPIAFVRGEGARLWDDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIH 73

Query: 131 ATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG-----MI 185
            + +Y      + AE L       +  V+F NSG EANE A+ +AR      G     +I
Sbjct: 74  TSNLYYIEPQEELAEKLVEL--SGMDKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEII 131

Query: 186 ALRNAYHGGSSGTIGLTALNTW--KY-----PIPQGEIHHVVNPDPYHGSFGSDAARYAQ 238
              N++HG +  T  L+A  T   KY     P+ +G I+   N          D      
Sbjct: 132 TAENSFHGRTLAT--LSA--TGQPKYQEGFEPLVEGFIYVPFN----------DIE---- 173

Query: 239 DLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG 298
            L+  I      K A  + E IQG GG       YL+ + ++  + G + I DEVQTG G
Sbjct: 174 ALKAAIT----DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMG 229

Query: 299 RTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCS 358
           RTG   + ++  G+ PDI+T+AKG+G G+P+GAV+   ++A+V       +TFGGNP+  
Sbjct: 230 RTGK-LFAYQHYGIEPDIMTLAKGLGGGVPIGAVLAKEKVADVFTPGDHGSTFGGNPLAC 288

Query: 359 AGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKE 418
           A  LAV+ +I++E    + A+VG +L  +LR L E++  I +VRG GLM+G+EL     E
Sbjct: 289 AAALAVIEIIEEEGLLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIELDRPAAE 348

Query: 419 KTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALD 471
                     + +K  E G+L+   G   NV R+ PP+  +K++ D  VD L+
Sbjct: 349 ----------IVKKALEKGLLINVTG--DNVLRLLPPLIISKEEIDEAVDRLE 389

Length = 396

>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional

 Score =  292 bits (750), Expect = 1e-94
 Identities = 147/422 (34%), Positives = 220/422 (52%), Gaps = 13/422 (3%)

Query: 59  QVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVL 118
            + ++  Q L P++       L +V+G+  Y +  +G+ YLD  +GI   + GH HP V+
Sbjct: 7   DLVERYPQLLAPAL-AKDHPNLPVVKGEGCYYYGVDGKEYLDFTSGIAVANVGHRHPKVV 65

Query: 119 NAIFEQSKLLQHATT-IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARL 177
            AI EQ+  L H  + +  + +I   AE LA   PG L   +F NSG EA E A+ +A+ 
Sbjct: 66  QAIKEQADKLMHGPSGVIYYESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKH 125

Query: 178 STGNLGMIALRNAYHGGSSGTIGLTALNT---WKYPIPQGEIHHVVNPDPYHGSFGSDAA 234
            T    +I+    +HG + G + +T   +     Y    G ++    P       G D  
Sbjct: 126 VTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPE 185

Query: 235 RYAQDLQDHID--FG---TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI 289
               +    ++  F    T  +VA  I E + G GG +     +LK + +I  + G + I
Sbjct: 186 VCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLI 245

Query: 290 ADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFN 349
            DEVQTGFGRTG  +   +T GV+PDI+T+AKGI +GLPL AVV + E+           
Sbjct: 246 FDEVQTGFGRTGEWFAA-QTFGVVPDIMTIAKGIASGLPLSAVVASKELMEQWPLGSHGT 304

Query: 350 TFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVG 409
           TFGGNPV  A  LA L VI +E+   +  ++G++ L RL  L+E+H +IGDVRG GLM+G
Sbjct: 305 TFGGNPVACAAALATLEVIKEEKLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIG 364

Query: 410 MELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDA 469
           +E+V    +  P       + +K  E G+L    G  GNV R+ PP+  TK++ D  +D 
Sbjct: 365 IEIV--DPDGEPDGDAVEKILDKCLEKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDI 422

Query: 470 LD 471
           LD
Sbjct: 423 LD 424

Length = 433

>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional

 Score =  286 bits (733), Expect = 6e-92
 Identities = 161/441 (36%), Positives = 238/441 (53%), Gaps = 31/441 (7%)

Query: 54  GPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHC 113
           GP A ++ ++ +++L  S   +Y  PL I  G+  ++ D +G  YLD  AGI   + GH 
Sbjct: 14  GPKAREIIERDEKYLAQSTRRWY--PLVIERGEGVWVEDVDGNVYLDFNAGIAVTNVGHA 71

Query: 114 HPDVLNAIFEQSKLLQHAT-TIYLHHAIADFAEALASKMPGNL-KVVYFVNSGTEANELA 171
           HP V+ A+ EQ++   H + T + +    + AE L    PG   K V+F NSGTE+NE A
Sbjct: 72  HPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAA 131

Query: 172 MLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNT----WKYPIPQGEIHHVVNPDPYHG 227
           + +AR  TG   +IA   A+HG + G++ LTA         +P+  G IH V  P+PY  
Sbjct: 132 IKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIH-VPYPNPYRN 190

Query: 228 SFG-SDAARYAQDLQDHID---FGTS---GKVAGFIAETIQGVGGAVELAPGYLKLVYDI 280
            +G  +       + D I+   F       +VA  I E IQG GG V     + K +  +
Sbjct: 191 PWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKL 250

Query: 281 VRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIAN 340
             K G + I DEVQTG GRTG   +  E  GV PDI+T+AK I  GLPLGAV+   E   
Sbjct: 251 ADKYGILLIDDEVQTGMGRTGK-MFAIEHFGVEPDIITLAKAIAGGLPLGAVIGRAE--- 306

Query: 341 VMAQK--IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDII 398
           +M        NTFGGNPV +A  LA L  + +E    +   +G +L   L+ L+E+++ I
Sbjct: 307 LMFLPPGSHANTFGGNPVAAAAALATLEEL-EEGLLENAQKLGEYLRKELKELKEKYEFI 365

Query: 399 GDVRGRGLMVGMELVTDRKEKTPAKAETAVL--FEKLRELGVLVGKGGLHGNVFRIKPPM 456
           GDVRG GLM+G+ELV DRKE  P   +  +   F++    G+L+   G   +  RI PP+
Sbjct: 366 GDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKR----GLLLLGAGK--SAIRIIPPL 419

Query: 457 CFTKDDADFLVDALDYSMSKL 477
             T+++AD  ++ L+ ++ +L
Sbjct: 420 IITEEEADIGLEILEEAIKEL 440

Length = 441

>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III

 Score =  272 bits (698), Expect = 4e-88
 Identities = 131/342 (38%), Positives = 183/342 (53%), Gaps = 14/342 (4%)

Query: 81  NIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH-A 139
            I + K  +L+D +GRRYLD  +GI  V+ GHCHP ++ A+ EQ+  L H +        
Sbjct: 1   FITKAKGVWLYDVDGRRYLDFLSGIAVVNLGHCHPKIVQAVKEQADKLTHTSFRAFTTEP 60

Query: 140 IADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR------LSTGNLGMIALRNAYHG 193
               AE LA   PG L  V+F+NSG+EANE A+ +AR       +TG   +IA    +HG
Sbjct: 61  ALQLAEKLAQLTPGGLDRVFFMNSGSEANETAIKLARQYAKKKGATGKTKIIAFSGGFHG 120

Query: 194 GSSGTIGLTALNTWKYPI--PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGK 251
            + G + +T  + +K         ++ +  PD          A  A  L   +       
Sbjct: 121 RTLGALSVTGSSGYKKGFGPSLPGVYFLPYPDLEAAEEELACADEALRLIKAVH---DDN 177

Query: 252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQG 311
           +A  I E IQG GG V   PG+L  + +I +K G + IADEVQTGFGRTG   +  E  G
Sbjct: 178 IAAVIVEPIQGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGK-LFACEHYG 236

Query: 312 VIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKE 371
           V PDI+T+AK +  GLPL AV+ T EI           TFGGNP+  A  LAVL +I+ E
Sbjct: 237 VTPDIMTLAKALTGGLPLSAVLATAEIMQAFHPGSHGGTFGGNPLACAAALAVLDIIEDE 296

Query: 372 RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELV 413
               +  + G +L   L  LQ++  +IGDVRG+GLM+ +E+V
Sbjct: 297 NLLQNAQEKGDYLRKGLLALQDK-PVIGDVRGKGLMIAIEIV 337

Length = 338

>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family

 Score =  273 bits (699), Expect = 1e-87
 Identities = 142/405 (35%), Positives = 205/405 (50%), Gaps = 42/405 (10%)

Query: 75  YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI 134
           Y + P+ IV GK  Y++D NG+ YLD  AGI   S GH HP ++ A+ EQ + L H + +
Sbjct: 6   YGRLPVKIVRGKGAYVYDVNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHVSNL 65

Query: 135 YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG-----MIALRN 189
           Y      + AE L          V+F NSG EANE A+ +AR  TG+ G     +IA  N
Sbjct: 66  YYTEPQEELAEKLVEHS--GADRVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFEN 123

Query: 190 AYHGGSSGTIGLT---ALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF 246
           ++HG + G +  T          P+  G   +    D              + L+  ID 
Sbjct: 124 SFHGRTMGALSATGQPKYQKGFEPLVPG-FSYAPYNDI-------------ESLKKAID- 168

Query: 247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG 306
               + A  I E IQG GG    +  +LK + +I +    + I DEVQTG GRTG  ++ 
Sbjct: 169 ---DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGK-FFA 224

Query: 307 FETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLR 366
           +E  G+ PDI+T+AKG+G G+P+GA +   E+A         +TFGGNP+  A  LAVL 
Sbjct: 225 YEHYGIEPDIITLAKGLGGGVPIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLE 284

Query: 367 VIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAET 426
           VI+KER   +  + G +   RL  L + +    +VRG+GLM+G+EL    K+        
Sbjct: 285 VIEKERLLENVKEKGDYFKERLEELGKNY-PNKEVRGKGLMLGIELEAPCKD-------- 335

Query: 427 AVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALD 471
             + +K  E G+LV   G    V R  PP+  TK++ D  V AL+
Sbjct: 336 --IVKKALEKGLLVNCAG--PKVLRFLPPLIITKEEIDEAVSALE 376

This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379

>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional

 Score =  270 bits (691), Expect = 8e-86
 Identities = 137/429 (31%), Positives = 220/429 (51%), Gaps = 20/429 (4%)

Query: 55  PSADQVFQKRKQFLGP-SIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHC 113
               ++ ++  + + P +   YY  PL  V+ +   ++D  G  Y+D  +     + GH 
Sbjct: 1   MKPLEIIERYSKVISPANRVTYY--PLVPVKAENAKVWDIEGNEYIDFLSDAAVQNVGHN 58

Query: 114 HPDVLNAIFEQSKLLQHATTIYLHH-AIADFAEALASKMPGNLKVVYFVNSGTEANELAM 172
           +P V+ AI EQ+  L H T IY         AE L    PG+   V F  SG++AN+ A+
Sbjct: 59  NPRVVKAIKEQTDKLIHYTPIYGFPVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAI 118

Query: 173 LMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI-----PQGEIHHVVNPDPYHG 227
             AR  T    +++   +Y+G + G + LT L+   +P+        ++H++  PD Y  
Sbjct: 119 KFARAYTKRRKILSYLRSYYGSTYGAMSLTGLD---FPVRALVGELSDVHYIPYPDCYRC 175

Query: 228 SFGSDAARYAQDLQDHID--FGT---SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVR 282
            FG +      +  ++I   F     +  VA   AE IQG  G +     Y K +  I+ 
Sbjct: 176 PFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILD 235

Query: 283 KAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVM 342
           + G + + DEVQ+G GRTG  ++  E  GV PDI+T+ K +G GLP+ A +   EI + +
Sbjct: 236 EHGILLVVDEVQSGLGRTGK-WFAIEHFGVEPDIITLGKPLGGGLPISATIGRAEIMDSL 294

Query: 343 AQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR 402
                  T  GNPV SA  LAV+  I+++        +G++   RL  ++++H++IGDVR
Sbjct: 295 PPLAHAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKKHELIGDVR 354

Query: 403 GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDD 462
           G GLM+G++LV DR+ K  A  E A +  +  ELG++V      GNV RI+PP+   K+ 
Sbjct: 355 GIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTF--FSGNVLRIQPPLTIEKEV 412

Query: 463 ADFLVDALD 471
            D  +D L+
Sbjct: 413 LDEGLDILE 421

Length = 443

>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated

 Score =  254 bits (651), Expect = 1e-79
 Identities = 139/426 (32%), Positives = 212/426 (49%), Gaps = 28/426 (6%)

Query: 77  QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL 136
              + + + +  ++ D  G RYLD  +G+  V+ G+   ++  A +EQ K L +      
Sbjct: 28  NATMVVAKAEGAWVTDIQGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSYFPLTQS 87

Query: 137 HHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR---LSTGNLG---MIALRNA 190
           H      AE L ++  G   V++F NSG+EANE A  +AR      G       I+   A
Sbjct: 88  HEPAIKLAEKL-NEWLGGEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRA 146

Query: 191 YHGGSSGTIGLT--ALNTWKY-PIPQGEIHHVVNPDPYHGSFGSDAARY----AQDLQDH 243
           YHG S G +  T  A   +KY P+  G +H V  PD Y          Y     +++   
Sbjct: 147 YHGNSMGALAATGQAQRKYKYEPLAPGFLH-VPPPDCYRMPGIESEDIYDLECVKEIDRV 205

Query: 244 IDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH 303
           + +  S  +A  I E I   GG +     Y+K V +I +K G + I+DEV  GFGRTG  
Sbjct: 206 MTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKA 265

Query: 304 YWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQF------NTFGGNPV 356
           + GF   GV PDI+TMAKGI +  LPL A     EI      K ++      NTFGGNP 
Sbjct: 266 F-GFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPA 324

Query: 357 CSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDR 416
             A  L  L +++ E      A +G  LL +L+     H ++GD+RG+GL+VG+ELV D+
Sbjct: 325 ACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDK 384

Query: 417 KEKTPAKAET-AVLFEKLRELGVLVGKGGL----HGNVFRIKPPMCFTKDDADFLVDALD 471
           + K PA  +  A +    +E G+++GK G     + NV  + PP+  + ++  F+V  L 
Sbjct: 385 ETKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLK 444

Query: 472 YSMSKL 477
            ++ ++
Sbjct: 445 TALERI 450

Length = 451

>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional

 Score =  252 bits (646), Expect = 1e-79
 Identities = 136/396 (34%), Positives = 187/396 (47%), Gaps = 37/396 (9%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH 138
           PL +V G+   ++D +G+ YLD   GI   + GH HP V+ A+  Q   L H + ++   
Sbjct: 26  PLALVRGEGAVVWDVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLFATE 85

Query: 139 AIADFAEALASKM-PGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSG 197
                AE L   +       V+F NSG EANE A  +ARL TG   ++A    +HG + G
Sbjct: 86  PQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARL-TGRTKIVAAEGGFHGRTMG 144

Query: 198 TIGLT---ALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAG 254
            + LT   A      P+P G + HV    PY    G   A     L   +D       A 
Sbjct: 145 ALALTGQPAKRAPFEPLP-GGVEHV----PY----GDVDA-----LAAAVD----DDTAA 186

Query: 255 FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIP 314
              E IQG  G V    GYL    +I  + G + + DEVQTG GRTG  ++  +  GV P
Sbjct: 187 VFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTG-AWFAHQHDGVTP 245

Query: 315 DIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQ 374
           D+VT+AKG+G GLP+GA +     A+++   +  +TFGGNPV  A  LAVL  I  E   
Sbjct: 246 DVVTLAKGLGGGLPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLL 305

Query: 375 AHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR 434
            +   +G  L   +  L   H ++  VRGRGL++G+ L            E A      R
Sbjct: 306 ENAERLGEQLRAGIEAL--GHPLVDHVRGRGLLLGIVLTAPVA----KAVEAA-----AR 354

Query: 435 ELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDAL 470
           E G LV       +V R+ PP+  T    D  V AL
Sbjct: 355 EAGFLVNAVA--PDVIRLAPPLIITDAQVDAFVAAL 388

Length = 398

>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional

 Score =  244 bits (625), Expect = 7e-76
 Identities = 140/429 (32%), Positives = 214/429 (49%), Gaps = 33/429 (7%)

Query: 77  QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI-- 134
           + P+ IV G   Y++D +G++ LD   G+  V+ GH   +V  AI  Q   L++ +T   
Sbjct: 23  RPPIIIVRGDGVYVYDIDGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDG 82

Query: 135 YLHHAIADFAEALASKM-PGNLKVVYFVNSGTEANELAMLMARL------STGNLGMIAL 187
             H    + +  L     P  ++ V+F + G+++ E A+ +AR              I+L
Sbjct: 83  TTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISL 142

Query: 188 RNAYHG---GSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSD-----AARYAQD 239
           +  YHG   G +   G T       P+  G   HV  P  Y   F        A   A+ 
Sbjct: 143 KQGYHGTHFGGASVNGNTVFRRNYEPLLPG-CFHVETPWLYRNPFTEQDPEELARICARL 201

Query: 240 LQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGR 299
           L+  I F     +A FIAE +QG GG +     +  LV ++  + G + IADEV TGFGR
Sbjct: 202 LEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGR 261

Query: 300 TGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQF-------NTF 351
           TGS ++G    GV PDI+ +AKGI +G +PLGA +    IA+       F        T+
Sbjct: 262 TGS-WFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTY 320

Query: 352 GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGME 411
            G+PV  A  LA L ++ +E   A+ A  G++LL  L+ L+ER +++GDVRG+GLM+ ++
Sbjct: 321 SGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALD 380

Query: 412 LVTDRKEKTPA---KAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVD 468
           LV D+  + P    K     + +  RE GVLV      G    + PP+   ++D D +VD
Sbjct: 381 LVADKATREPIDPSKGYANAVADVARENGVLVRPS---GTKIILSPPLVIQREDVDRIVD 437

Query: 469 ALDYSMSKL 477
           ALD  +S +
Sbjct: 438 ALDAGLSAV 446

Length = 449

>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional

 Score =  243 bits (621), Expect = 3e-75
 Identities = 129/434 (29%), Positives = 212/434 (48%), Gaps = 18/434 (4%)

Query: 56  SADQVFQKRKQFLG-PSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCH 114
            A Q+ Q+ + +        YY  PL I  G    L D +G+ Y+D  A   + + GH  
Sbjct: 3   KAHQLIQEDEHYFAKSGRIKYY--PLVIDHGYGATLTDVDGKTYIDLLASASSQNVGHAP 60

Query: 115 PDVLNAIFEQSKLLQHATTIYLHHA-IADFAEALASKMPGNL-KVVYFVNSGTEANELAM 172
           P V+ AI  Q+    H T  Y++H  +   A+ L    PG+  K V F  SG++AN+  +
Sbjct: 61  PRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGII 120

Query: 173 LMARLSTGNLGMIALRNAYHGGSSGTIGLTA--LNTWKY--PIPQGEIHHVVNPDPYHGS 228
             AR  TG   +I+  NAYHG + G++ ++   LN  +   P+  G   H+  PD Y G 
Sbjct: 121 KFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPG-FVHIPFPDKYRGM 179

Query: 229 FGSD----AARYAQDLQDHID-FGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK 283
           +          Y   L++  + +  + +VA  + ETIQG GG +E  PGY + +Y   R+
Sbjct: 180 YEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCRE 239

Query: 284 AGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMA 343
            G +   D++Q G GRTG  +       + PD+++  K +  G+P+ A+V   EI   + 
Sbjct: 240 HGILFAVDDIQQGLGRTGK-WSSISHFNITPDLMSFGKSLAGGMPMSAIVGRKEIMESLE 298

Query: 344 QKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRG 403
                 T G NPV  A  LA + +I+ E      A+ G +   R      +++ +GDVRG
Sbjct: 299 APAHLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEYARKRFDQWVSKYNFVGDVRG 358

Query: 404 RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDA 463
            GL +G+++V+D+K KT        +     E GV++    + GNV R +PP+  T +  
Sbjct: 359 YGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVI--IAVAGNVLRFQPPLVITYEQL 416

Query: 464 DFLVDALDYSMSKL 477
           D  ++ ++ + + L
Sbjct: 417 DTALNTIEQAFTAL 430

Length = 445

>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional

 Score =  242 bits (619), Expect = 7e-75
 Identities = 136/412 (33%), Positives = 213/412 (51%), Gaps = 26/412 (6%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI---Y 135
           P+ I   +  Y++D  GRRYLD  + +V  + GH HP V+ AI EQ+  L    T+   +
Sbjct: 36  PMVIAGAEGSYVWDYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARL---CTVAPAH 92

Query: 136 LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGS 195
            + A ++ A  +A + PG+L  V+F N G +ANE A+ MARL TG   +++   +YHGG+
Sbjct: 93  ANDARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGT 152

Query: 196 SGTIGLTA-LNTWKYPIPQGEIHHVVNPDPYHGSFGS-----DAARYAQDLQDHIDFGTS 249
              I LT     W     +  + H   P  Y   F +     +  R    L+  I+    
Sbjct: 153 GSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGP 212

Query: 250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET 309
             +A  + E++ G  G +   PGYL  V ++  + G V IADEV  GFGRTG  ++  E 
Sbjct: 213 STIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTG-KWFAIEH 271

Query: 310 QGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFN--TFGGNPVCSAGGLAVLR 366
            GV+PD++T AKG+ +G +PLG V  +  IA   A +      T+ G+P+  A  +A + 
Sbjct: 272 FGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAAAVATIN 331

Query: 367 VIDKERRQAHCADVGSHLLG-RLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTP---- 421
            +++E    + A +G+ +LG  LR L ERH  +G+VRG G+   +ELV DR+ + P    
Sbjct: 332 AMEEEGIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADRETREPLAPY 391

Query: 422 --AKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALD 471
             + A  A +    +E G+L     ++GN   + PP   T+D+    +  LD
Sbjct: 392 GASSAAMAAVKAACKERGLL---PFVNGNRIHVVPPCTVTEDEVREGLAILD 440

Length = 451

>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional

 Score =  238 bits (609), Expect = 3e-74
 Identities = 137/407 (33%), Positives = 198/407 (48%), Gaps = 51/407 (12%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH 138
            L    G+  +L DE+G RYLD  +GI   S GH HP ++ A+ EQ++ L H + +Y   
Sbjct: 14  DLAFERGEGVWLIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSNLY--- 70

Query: 139 AIADFAEALASKMPGN--LKVVYFVNSGTEANELAMLMAR---LSTGN---LGMIALRNA 190
            I +  E LA ++  N     V+F NSG EA E A+  AR      G+     +I    A
Sbjct: 71  RIPE-QERLAERLVENSFADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGA 129

Query: 191 YHGGSSGTIGLTALNTWKY-----PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHID 245
           +HG +  TI   A    KY     P+  G    V   D        +A + A      I 
Sbjct: 130 FHGRTLATI--AAGGQEKYLEGFGPLVPG-FDQVPFGD-------IEALKAA------IT 173

Query: 246 FGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW 305
             T    A  + E IQG GG       +LK +  +  + G + I DEVQ G GRTG   +
Sbjct: 174 PNT----AAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGK-LF 228

Query: 306 GFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVL 365
             E  GV PDI+ +AKGIG G PLGA + T E A  M      +T+GGNP+  A G AVL
Sbjct: 229 AHEWAGVTPDIMAVAKGIGGGFPLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVL 288

Query: 366 RVIDKERRQAHCADVGSHLLGRLRTLQERH-DIIGDVRGRGLMVGMELVTDRKEKTPAKA 424
            VI       +   +G +L  +L  L +R  D+I +VRG+GL++G++ V   ++      
Sbjct: 289 DVILAPGFLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGLKCVVPNRD------ 342

Query: 425 ETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALD 471
               L + LR+ G+L    G   NV R+ PP+  T+++ D  ++ L+
Sbjct: 343 ----LVQALRDEGLLTVGAG--DNVVRLLPPLIITEEEIDEALERLE 383

Length = 389

>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional

 Score =  237 bits (608), Expect = 4e-74
 Identities = 137/406 (33%), Positives = 213/406 (52%), Gaps = 41/406 (10%)

Query: 71  SIFHYYQK-PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ 129
            +F  Y + P++IV+GK   + D NG+ YLD  +GI   + GHCHP V  A+ EQ   + 
Sbjct: 3   HLFPTYGRFPIDIVKGKGTKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIW 62

Query: 130 HATTIYLHHAIADFAEALASKMPGN--LKVVYFVNSGTEANELAMLMARLSTGNLGMIAL 187
           H + ++  +++    E +AS +  N    +V+F NSG EANE A+ +AR  TG   ++  
Sbjct: 63  HVSNLF-TNSL---QEEVASLLAENSAGDLVFFCNSGAEANEAALKLARKHTGKSKIVTF 118

Query: 188 RNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNP---DPYHGSFGSDAARYAQDLQDHI 244
             ++HG + GT+  T          Q +I     P      H  F    A     L++ +
Sbjct: 119 EQSFHGRTFGTMSATG---------QEKIKEGFGPLLPGFTHVPFNDIKA-----LKEVM 164

Query: 245 DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHY 304
           +     +VA  + E +QG GG +   P +L+ V  + +K G + I DEVQTG GRTG+ +
Sbjct: 165 N----EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLF 220

Query: 305 WGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAV 364
             +E  G+ PDIVT+AKG+GNG+P+GA++   E+          +TFGGNP+  A    V
Sbjct: 221 -AYEQFGLDPDIVTVAKGLGNGIPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEV 279

Query: 365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKA 424
           L+VI +        + G + L +L+   E  + + ++RG+GLM+G+E             
Sbjct: 280 LQVIKQPSFLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLMIGIEC----------TE 329

Query: 425 ETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDAL 470
           E A + E+LRE G+LV   G   NV R+ PP+  TK++ D  V  L
Sbjct: 330 EVAPVIEQLREEGLLVLSAG--PNVIRLLPPLVVTKEELDQAVYLL 373

Length = 377

>gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional

 Score =  230 bits (589), Expect = 1e-70
 Identities = 155/435 (35%), Positives = 213/435 (48%), Gaps = 41/435 (9%)

Query: 71  SIFHYY--QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSC-GHCHPDVLNAIFEQSKL 127
            +FH          V G+  YL D  G+RYLDA  G   VSC GH HP V+ AI  Q   
Sbjct: 3   HVFHRSPRATLPVAVAGEGIYLIDATGKRYLDASGG-AAVSCLGHSHPRVIAAIHAQIDR 61

Query: 128 LQHATTIYLHHAIAD-FAEALASKMPGNLKVVYFVNSGTEANELAMLMAR---LSTGNLG 183
           L +A T +     A+  A+ L +  P  L+ VYFV+ G+EA E A+ +AR   +  G   
Sbjct: 62  LAYAHTSFFTTEPAEALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQ 121

Query: 184 ---MIALRNAYHGGSSGTIGLTAL--NTWK----YPIPQGEIHHVVNPDPYHG-----SF 229
               IA R +YHG    T+G  A+  N W+     P+   E HHV     Y       S 
Sbjct: 122 RRHFIARRQSYHGN---TLGALAIGGNAWRREPFAPLLI-EAHHVSPCYAYREQRAGESD 177

Query: 230 GSDAARYAQDLQDHIDFGTSGKVAGFIAETIQG-VGGAVELAPGYLKLVYDIVRKAGGVC 288
            +   R A +L+  I       VA F+AET+ G   GAV   PGY K + ++  + G + 
Sbjct: 178 EAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLL 237

Query: 289 IADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQ 347
           I DEV  G GRTG   +  E  GV PD+VT+AKG+G G  P+GAV+ +  I + +A    
Sbjct: 238 ILDEVMCGMGRTG-TLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSG 296

Query: 348 F----NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRG 403
           F    +T+ G+    A  LAV RVI ++   A+    G  L  RLR    +H  +GD+RG
Sbjct: 297 FFQHGHTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLRARLRERLGQHPHVGDIRG 356

Query: 404 RGLMVGMELVTDRKEKT---PAKAETAVLFEKLRELGVLV--GKG---GLHGNVFRIKPP 455
           RGL VG+ELV DR  K    PA    A +  +    G++V    G   G+ G+   + PP
Sbjct: 357 RGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPP 416

Query: 456 MCFTKDDADFLVDAL 470
              T    D +V+ L
Sbjct: 417 FIITAAQIDEIVERL 431

Length = 443

>gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional

 Score =  226 bits (578), Expect = 1e-68
 Identities = 126/420 (30%), Positives = 206/420 (49%), Gaps = 29/420 (6%)

Query: 77  QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY- 135
           +  L IVE +  Y+ D +GRRYLD   G+  V+ G+   ++ +AI +Q++ L + T    
Sbjct: 32  EGSLVIVEAEGIYVTDADGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPFGD 91

Query: 136 -LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALR 188
             +   A+ A  LA   PG+L  V+    G+ A + A+          G      +I   
Sbjct: 92  MTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRG 151

Query: 189 NAYHGGS--SGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARY----AQDLQD 242
           +AYHG +  + ++   A +  ++      +HH+ +P+PY    G   A +      + +D
Sbjct: 152 DAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFED 211

Query: 243 HIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS 302
            I    +  +A FIAE I G GG +   PGY   + +I R+   + I+DEV TGFGR G 
Sbjct: 212 KILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGH 271

Query: 303 HYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVM----AQKIQFN---TFGGN 354
            +      G+ PDI+T AKG+ +G  PLGAV+ +  + +V+    A+   F    T+ G+
Sbjct: 272 FFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGH 331

Query: 355 PVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVT 414
           PV  A  L  + ++++E    H  +VG +   RL +L+E   ++GDVRG  LM  +E V 
Sbjct: 332 PVACAAALKNIEIMEREGLCEHVREVGPYFEERLASLRE-LPLVGDVRGDHLMACVECVA 390

Query: 415 DRKEKTPAKAETAV---LFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALD 471
           D+  K     + A+   +    +E G+LV     H  V  + PP+  T+   D +V  L 
Sbjct: 391 DKGSKALLPEDIAIGQRIDRHCQERGLLVRPLE-HLCV--LSPPLIITRAQIDEIVAILR 447

Length = 466

>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional

 Score =  223 bits (570), Expect = 1e-67
 Identities = 128/420 (30%), Positives = 203/420 (48%), Gaps = 35/420 (8%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYL 136
           PL I  G+  Y++D+ G+RY++  AG+ +V+ G     ++ A   Q K L   H  +   
Sbjct: 31  PLVIERGEGIYVYDDAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHTFSHKS 90

Query: 137 HHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGM------IALRNA 190
           H  + D AE L +  P  +  V+F NSG+EAN+  + +       LG       I+ +  
Sbjct: 91  HGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRG 150

Query: 191 YHGGSSGTIGLTAL----NTWKYPIPQGEIHHVVNPDPYHG-----SFGSDAARYAQDLQ 241
           YHG +  +  LT L     ++  P+ +  I H   P  Y       S  + A R A +L+
Sbjct: 151 YHGVTIASASLTGLPNNHRSFDLPLDR--ILHTGCPHYYRFGLPGESEEAFATRLANELE 208

Query: 242 DHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTG 301
             I       +A FI E + G GG +     Y + +  ++RK   + +ADEV  GFGRTG
Sbjct: 209 ALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTG 268

Query: 302 SHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMA-QKIQFNTFG------G 353
           +  +G ET G+ PDI+ M+K + +   PL AV+   ++ + +A +  +  TFG      G
Sbjct: 269 N-MFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASG 327

Query: 354 NPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELV 413
           +PV +A  L  L +I++     + A+ G+ L  RLR L + H ++G+VRG GL+  +ELV
Sbjct: 328 HPVAAAVALENLAIIEERDLVGNAAERGARLQARLRALAD-HPLVGEVRGVGLIAAVELV 386

Query: 414 TDRKEKTPAKAETAV---LFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDAL 470
            D+  KTP +    V         E GV+       G+     PP+  T    D +VD  
Sbjct: 387 ADKATKTPFEPPGKVGARANAAAHEHGVISRA---MGDTLAFCPPLIITAAQVDEMVDRF 443

Length = 460

>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional

 Score =  222 bits (567), Expect = 2e-67
 Identities = 136/393 (34%), Positives = 190/393 (48%), Gaps = 23/393 (5%)

Query: 92  DENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT-TIYLHHAIADFAEALASK 150
           D +G R +D  +GI   S G+  P V+ A+ EQ     H    +  +      AE L   
Sbjct: 52  DVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFTHTCFMVTPYEGYVAVAEQLNRL 111

Query: 151 MPGNL-KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY 209
            PG+  K     NSG EA E A+ +AR  TG   ++   +AYHG ++ T+ LTA +    
Sbjct: 112 TPGDHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSM--- 168

Query: 210 PIPQG------EIHHVVNPDPYH-----GSFGSDAARYAQDLQDHIDFGTSGKVAGFIAE 258
           P   G      E++      PY       + G +AA  A  + +    G    +A  I E
Sbjct: 169 PYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEK-QVGA-DNLAAVIIE 226

Query: 259 TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT 318
            IQG GG +  A G+L  + +  R+ G V IADEVQTGF RTG  ++  E +G++PD++T
Sbjct: 227 PIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTG-AWFACEHEGIVPDLIT 285

Query: 319 MAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCA 378
            AKGI  GLPL AV    EI +         T+GGNPV  A  LA +  I+++   A   
Sbjct: 286 TAKGIAGGLPLSAVTGRAEIMDAPHPGGLGGTYGGNPVACAAALAAIETIEEDDLVARAR 345

Query: 379 DVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGV 438
            + + +  RLR L    D IGDVRGRG M+ +ELV       P    T  L       GV
Sbjct: 346 QIEALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPG-TTEPDAELTKALAAAAHAAGV 404

Query: 439 LVGKGGLHGNVFRIKPPMCFTKDDADFLVDALD 471
           +V   G +GNV R+ PP+       + L + LD
Sbjct: 405 IVLTCGTYGNVIRLLPPLVI---GDELLREGLD 434

Length = 443

>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional

 Score =  221 bits (565), Expect = 5e-67
 Identities = 137/431 (31%), Positives = 215/431 (49%), Gaps = 44/431 (10%)

Query: 82  IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIA 141
           I  GK  YL+D+NG +Y D  +G VT   GH   ++ +AI EQ    +  + +Y     +
Sbjct: 17  ISHGKGVYLYDQNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQ---AEEVSFVYRSQFTS 73

Query: 142 DFAEALASKM----PGNLKVVYFVNSGTEANELAMLMA------RLSTGNLGMIALRNAY 191
           + AE LA K+    PG+L   +FVNSG+EANE AM +A      R   G   +++   +Y
Sbjct: 74  EPAEKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSY 133

Query: 192 HGGSSGTIGLTALNTWKYPIPQGEIHHVVN-------PDPY----HGSFGSDAARYAQDL 240
           HG     I + AL+   +P+ +     ++        P  Y       + +     A +L
Sbjct: 134 HG-----ITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATEL 188

Query: 241 QDHIDFGTSGKVAGFIAETIQGV-GGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGR 299
           +  I+   +  +A FIAE I G  G AV    GY K++ +I      + IADEV TG GR
Sbjct: 189 ETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGR 248

Query: 300 TGSHYWGFETQGVIPDIVTMAKGIGNGL-PLGAVVTTPEIANVMAQKIQF----NTFGGN 354
           TG+ +   E  GV PDI+T+ KG+G G  P+ A V +  +   + +  +     +T   N
Sbjct: 249 TGAMF-AMEHWGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSAN 307

Query: 355 PVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVT 414
           P+ +A  LAVL  ++K       A+ G +L+  L+ +Q++  IIGDVRG+GL++G+E V 
Sbjct: 308 PLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVA 367

Query: 415 DRKEKTPAKAE---TAVLFEKLRELGVLV-----GKGGLHGNVFRIKPPMCFTKDDADFL 466
           D+K K P        + L     + G+L+     G+ G  G+   I PPM  T  + D L
Sbjct: 368 DKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDEL 427

Query: 467 VDALDYSMSKL 477
           +     S+ ++
Sbjct: 428 LSIFAKSVEEM 438

Length = 447

>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type

 Score =  215 bits (549), Expect = 6e-65
 Identities = 125/377 (33%), Positives = 180/377 (47%), Gaps = 13/377 (3%)

Query: 90  LFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH-ATTIYLHHAIADFAEALA 148
           L D +G R +D  +GI  ++ GH HP V++A+  Q     H    +  +      AE L 
Sbjct: 27  LEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLN 86

Query: 149 SKMPGN-LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTA-LNT 206
              PG+  K   F NSG EA E A+ +AR  TG  G++A  + +HG ++ T+ LTA +  
Sbjct: 87  RIAPGSGPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMP 146

Query: 207 WKY---PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG----KVAGFIAET 259
           +K    P    E++    P PY             +L               VA  + E 
Sbjct: 147 YKSGFGPFA-PEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALVIEP 205

Query: 260 IQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTM 319
           +QG GG +  A G++  + D  R+ G V IADEVQTGF RTG+  +  E +G  PD++T 
Sbjct: 206 VQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGA-MFACEHEGPEPDLITT 264

Query: 320 AKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCAD 379
           AK + +GLPL  V    EI +  A      T+ GNP+  A  LAVL +I+ E        
Sbjct: 265 AKSLADGLPLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQ 324

Query: 380 VGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVL 439
           +G  +  RL TL+     IGDVRG G M+ +ELV D     P       +       G+L
Sbjct: 325 IGRLVTDRLTTLKAVDPRIGDVRGLGAMIAVELV-DPGTTEPDAGLAERIATAAHAAGLL 383

Query: 440 VGKGGLHGNVFRIKPPM 456
           +   G+ GN+ R  PP+
Sbjct: 384 LLTCGMFGNIIRFLPPL 400

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420

>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated

 Score =  215 bits (550), Expect = 1e-64
 Identities = 135/436 (30%), Positives = 205/436 (47%), Gaps = 58/436 (13%)

Query: 82  IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY--LHHA 139
           I   +  YL+D  G + LD  AG+  V+ G+   ++ +A   Q + L +  T +   H  
Sbjct: 36  ITRAEGVYLWDSEGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNTFFKTTHPP 95

Query: 140 IADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGM------IALRNAYHG 193
             + A  LA   P     V+F NSG+EAN+  + M R      G       I+ +N YHG
Sbjct: 96  AIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHG 155

Query: 194 GSSGTIGLTALNTWKY-------PIPQGEIHHVVNPDPYHGSFGSDAARY----AQDLQD 242
               T+   +L   KY       PIP   I H+  P  +          +    A+ L+ 
Sbjct: 156 S---TVAGASLGGMKYMHEQGDLPIP--GIVHIDQPYWFGEGGDMTPEEFGLAAARQLEA 210

Query: 243 HIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS 302
            I    +  VA FI E IQG GG +     Y   +  I RK   + +ADEV  GFGRTG 
Sbjct: 211 KILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTG- 269

Query: 303 HYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKI-QFN---TFGGNPVC 357
            ++G +  G+ PD++T+AKG+ +G +P+GAV     +A V+ ++  +FN   T+ G+PV 
Sbjct: 270 EWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPVA 329

Query: 358 SAGGLAVLRVIDKERRQAHCA-DVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDR 416
           +A  LA LR++  E        D G +L  RLR L + H ++G+VRG GL+  +ELV D+
Sbjct: 330 AAVALANLRILRDEGIVERVRDDTGPYLQKRLRELAD-HPLVGEVRGVGLVGAIELVKDK 388

Query: 417 KEKTPAKAETAVLFEKLRELGVLVG----KGGLHGNVFR-------IKPPMCFTKDDADF 465
             +          FE    +G +        GL   + R       I PP+  T  + D 
Sbjct: 389 ATRER--------FEAGGGVGTICRDHCFANGL---IMRAVGDRMIISPPLVITHAEIDE 437

Query: 466 LVD----ALDYSMSKL 477
           LV+    ALD + ++L
Sbjct: 438 LVEKARKALDATAAEL 453

Length = 456

>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional

 Score =  213 bits (545), Expect = 2e-64
 Identities = 127/392 (32%), Positives = 190/392 (48%), Gaps = 13/392 (3%)

Query: 90  LFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT-TIYLHHAIADFAEALA 148
           ++D+ GRRY+D  AGI  V+ GH HP V+ A+  Q     H    +  +      AE L 
Sbjct: 34  IWDKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLN 93

Query: 149 SKMPGNL-KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTA-LNT 206
           + +PG+  K   FV +G EA E A+ +AR +TG   +IA    +HG +   + LT  +  
Sbjct: 94  ALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVP 153

Query: 207 WKY---PIPQGEIHHVVNPDPYHGSFGSDA-ARYAQDLQDHIDFGTSGKVAGFIAETIQG 262
           +K     +   +++HV  P   HG     + A   +  +  +D     +VA  I E +QG
Sbjct: 154 YKVGFGAMM-PDVYHVPFPVELHGVSVEQSLAALDKLFKADVD---PQRVAAIIIEPVQG 209

Query: 263 VGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKG 322
            GG       ++K + ++  + G + IADEVQTGF RTG   +  E   V  D+ TMAKG
Sbjct: 210 EGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTG-KLFAMEHHEVAADLTTMAKG 268

Query: 323 IGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGS 382
           +  G PL AV    EI +         T+GGNP+  A   AVL VI++E        +G+
Sbjct: 269 LAGGFPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGN 328

Query: 383 HLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGK 442
            L  RL +L+E    I D+RG G M  +E   D     P+      +  K  E G+++  
Sbjct: 329 RLKQRLASLRETVPEIADIRGPGFMNAVEF-NDADSGLPSAEFANRVRLKALEKGLILLT 387

Query: 443 GGLHGNVFRIKPPMCFTKDDADFLVDALDYSM 474
            G+HGNV R   P+    D     +D L+ S+
Sbjct: 388 CGVHGNVIRFLAPITIQDDVFAEALDILEASI 419

Length = 425

>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional

 Score =  211 bits (539), Expect = 3e-63
 Identities = 125/403 (31%), Positives = 198/403 (49%), Gaps = 39/403 (9%)

Query: 89  YLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQ-SKLLQHATTIYLHHAIADFAEAL 147
            L D  G+ ++D   G    + GH +P V++A+  Q +K   H+  + L    A  A+ L
Sbjct: 75  TLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL-LDPLRAMLAKTL 133

Query: 148 ASKMPGNLKVVYFVNSGTEANELAMLMARLST---GNLGMIALRNAYHGGSSGTIGLTAL 204
           A+  PG LK  +F NSGTE+ E A+ +A+      G    IA   A+HG S G +  TA 
Sbjct: 134 AALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAK 193

Query: 205 NTWKYP----IPQGEIHHVVNPDPYHGSFGS-DAARYA-QDLQDHIDFGTSGKVAGFIAE 258
           +T++ P    +P     HV         FG+ +A R A  + +      T   VA  I E
Sbjct: 194 STFRKPFMPLLPG--FRHV--------PFGNIEAMRTALSECK-----KTGDDVAAVILE 238

Query: 259 TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT 318
            IQG GG +    GYL  V  +  + G + I DEVQTG GRTG   +  E + V PDI+ 
Sbjct: 239 PIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGK-MFACEHENVQPDILC 297

Query: 319 MAKGIGNG-LPLGAVVTTPEIANVMAQK--IQFNTFGGNPVCSAGGLAVLRVIDKERRQA 375
           +AK +G G +P+GA + T E+ +V+     +   TFGGNP+  A  LA + V+ ++   A
Sbjct: 298 LAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPA 357

Query: 376 HCADVGSHLLGRLRTLQERH-DIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR 434
                G +LL   R L   + D++ + RG+G+++ +E V +      A      +F +  
Sbjct: 358 QAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNEIGYNFASE----MFRQ-- 411

Query: 435 ELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477
              VLV     +    RI+PP+  T +  + ++ A   +++ +
Sbjct: 412 --RVLVAGTLNNAKTIRIEPPLTLTIEQCEQVLKAARKALAAM 452

Length = 459

>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed

 Score =  211 bits (539), Expect = 4e-63
 Identities = 129/418 (30%), Positives = 217/418 (51%), Gaps = 17/418 (4%)

Query: 54  GPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAG-IVTVSCGH 112
           GP A  + ++R+  +   +      P          + D +G +Y+D FAG I T++ GH
Sbjct: 14  GPKAASLLERRQNIVPKGV--SNGIPTFAQSANGALVTDVDGNQYID-FAGAIGTINVGH 70

Query: 113 CHPDVLNAIFEQSKLLQH-ATTIYLHHAIADFAEALASKMPGNL-KVVYFVNSGTEANEL 170
            HP V  A+ +Q     H    + ++    + AE LA+  PG+  K V F+NSG EA E 
Sbjct: 71  SHPKVKEALHKQVDQYIHTGFNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVEN 130

Query: 171 AMLMARLSTGNLGMIALRNAYHGGSSGTIGLTA-LNTWKY---PIPQGEIHHVVNPDPYH 226
           A+ +AR  T   G+I+    +HG +  T+ +T+ +  +K+   P    E++    P  Y 
Sbjct: 131 AVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAP-EVYKAPFPYEYR 189

Query: 227 GSFG-SDAARYAQDLQDHIDFGTSG----KVAGFIAETIQGVGGAVELAPGYLKLVYDIV 281
              G ++       +++  +F  S      +A  + E +QG GG +  +  +++ V +I 
Sbjct: 190 RPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNIC 249

Query: 282 RKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANV 341
            + G + +ADE+QTGF RTG  Y+  E   V+PD++T++K +G G+P+  V+   EI + 
Sbjct: 250 SEHGILFVADEIQTGFARTG-KYFAIEHFDVVPDLITVSKSLGAGVPISGVIGRKEIMDE 308

Query: 342 MAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV 401
            A      T+ G+P+  A  LAVL +I+KE       ++G  ++ R   ++ +++ IGDV
Sbjct: 309 SAPGELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYNCIGDV 368

Query: 402 RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFT 459
           RG G M   ELV DRK K P K  TA + ++  + G+L+   G +GNV R+  P+  T
Sbjct: 369 RGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAGTYGNVIRVLMPLVIT 426

Length = 451

>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase

 Score =  210 bits (537), Expect = 4e-63
 Identities = 128/418 (30%), Positives = 194/418 (46%), Gaps = 41/418 (9%)

Query: 77  QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT---- 132
             PL I   +  YL+DE+GR Y+D  +       GH HP++  AI EQ   L+H      
Sbjct: 12  LPPLPIERAEGVYLYDEDGREYIDGISSWWVNIHGHNHPEINAAIKEQLDKLEHVMFGGL 71

Query: 133 TIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMA---RLSTGNLG---MIA 186
           T   H    + AE L    P  L+ V+F +SG+ A E+A+ MA     + G  G    +A
Sbjct: 72  T---HEPAIELAERLVEITPEGLEKVFFSDSGSVAVEVALKMALQYWQNQGRPGKTRFLA 128

Query: 187 LRNAYHGGSSGTIGLTALNTWKYP-----IPQGEIHHVVNPDPYHGSFGSD-AARYAQDL 240
            RN YHG + G + +  +  +                +  P  Y      D  A     L
Sbjct: 129 FRNGYHGDTFGAMSVGDVGGFHALFEPLLFEV---VFIPAPPCYRCWDPDDCEAECLAAL 185

Query: 241 QDHIDFGTSGKVAGFIAE-TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGR 299
           +  ++   + ++A FI E  +QG GG     P YL+ + ++  + G + IADE+ TGFGR
Sbjct: 186 EALLEE-HADEIAAFIVEPLVQGAGGMRFYPPEYLRKLRELCDEYGVLLIADEIATGFGR 244

Query: 300 TGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVM----AQKIQFN--TFG 352
           TG   +  E  GV PDI+ ++KG+  G LPL A +TT EI          K   +  T+ 
Sbjct: 245 TGK-LFACEHAGVTPDILCLSKGLTGGYLPLAATLTTDEIYEAFYSDDEGKAFMHGHTYT 303

Query: 353 GNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMEL 412
           GNP+  A  LA L ++++E      A + + L   L  L++ H  + DVR  G +  +EL
Sbjct: 304 GNPLACAAALASLDLLEEEDWLEQVARIEAQLRAGLAPLRD-HPGVADVRVLGAIGAVEL 362

Query: 413 VTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDAL 470
           V D +    AK     + +   E GVL+      GNV  + PP   T ++ + L  A+
Sbjct: 363 VRDVEPYIGAK-----IQQFFLERGVLLRP---LGNVIYLMPPYIITDEELEKLTAAI 412

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417

>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score =  210 bits (536), Expect = 1e-62
 Identities = 140/410 (34%), Positives = 205/410 (50%), Gaps = 31/410 (7%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFE--QSKLLQHATTIYL 136
           PL +   +  Y+ D  GR+++D  AG  T++ GH HP V+ AI +    +L  H  T+ L
Sbjct: 46  PLALKRARGIYVEDVEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLH--TLDL 103

Query: 137 HHAIAD-FAEALASKMPGNL----KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAY 191
              + D F + L + +P       K+ +   +GT+A E A+ + + +TG   +++ +  Y
Sbjct: 104 TTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGY 163

Query: 192 HGGSSGTIGLTALNTWKYPIPQ--GEIHHVVNPDPYH-----GSFGSDAARY-AQDLQDH 243
           HG S G + L      K P+      +  +  P PY      G  G    R     L++ 
Sbjct: 164 HGMSQGALSLMGNLGPKKPLGALLPGVQFL--PYPYDYRCPFGLGGEAGVRANLHYLENL 221

Query: 244 IDFGTSGKV--AGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTG 301
           +D   SG V  A  I E +QG GG +     +L+ +  I  +AG   I DE+Q+GFGRTG
Sbjct: 222 LDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTG 281

Query: 302 SHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGG 361
              + FE  G+IPD+V ++K IG  LPL AVV   E  +         TF GN +  A G
Sbjct: 282 K-MFAFEHAGIIPDVVVLSKAIGGSLPL-AVVVYREWLDTWQPGAHAGTFRGNQMAMAAG 339

Query: 362 LAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELV-----TDR 416
            A LR I + R   H A +G  L   LR LQ  +  +GDVRGRGLM+G+E+V      D 
Sbjct: 340 SATLRYIKEHRLAEHAAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDA 399

Query: 417 KEKTPAKAETAVLFEK--LRELGVLVGKGGLHGNVFRIKPPMCFTKDDAD 464
               PA  E A L ++  LR  G+++  GG HG+V R  PP+  T +  D
Sbjct: 400 LGHPPANGELASLIQRECLRR-GLILELGGRHGSVVRFLPPLIITAEQID 448

Length = 464

>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated

 Score =  203 bits (517), Expect = 3e-60
 Identities = 127/382 (33%), Positives = 188/382 (49%), Gaps = 16/382 (4%)

Query: 90  LFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL-HHAIADFAEALA 148
           ++D  GR YLD   GI  ++ GH HP V+ A+  Q K L H     L +    +  E + 
Sbjct: 35  VWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEKMN 94

Query: 149 SKMPGNL-KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLT---AL 204
            K+PG+  K    V +G+EA E A+ +AR +T   G+IA   AYHG +  T+ LT     
Sbjct: 95  QKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNP 154

Query: 205 NTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGK---VAGFIAETIQ 261
            +    +  G ++  + P P HG    DA    + +     F        +A  I E +Q
Sbjct: 155 YSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERI-----FKNDAAPEDIAAIIIEPVQ 209

Query: 262 GVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAK 321
           G GG    +P +++ +  +  + G + IADEVQTG GRTG+  +  E  GV  D+ T AK
Sbjct: 210 GEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGT-LFAMEQMGVAADLTTFAK 268

Query: 322 GIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVG 381
            I  G PL  V    E+ + +A      T+ GNP+  A  LAVL+V ++E        +G
Sbjct: 269 SIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALG 328

Query: 382 SHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVG 441
             L   L  + E+H  IGDVRG G M+ +EL  D     P    TA +  + R+ G+++ 
Sbjct: 329 EKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILL 388

Query: 442 KGGLHGNVFRIKPPMCFTKDDA 463
             G + NV RI  P+  T +DA
Sbjct: 389 SCGPYYNVLRILVPL--TIEDA 408

Length = 425

>gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional

 Score =  202 bits (517), Expect = 8e-60
 Identities = 134/446 (30%), Positives = 219/446 (49%), Gaps = 38/446 (8%)

Query: 58  DQVFQK-RKQFLGPSIFHYYQ-----KPLNIVE-GKMQYLFDENGRRYLDAFAGIVTVSC 110
           D++    R  F  PS  H         P  IVE G+   + D  GRRY+DAFAG+  V+ 
Sbjct: 6   DELLAWDRDHFFHPST-HLGDHARGELPGRIVEGGEGIRITDAQGRRYIDAFAGLYCVNV 64

Query: 111 GHCHPDVLNAIFEQSKLLQHATTIYLHH---AIADFAEALASKMPGNLKVVYFVNSGTEA 167
           G+   +V  AI EQ+K L +  T Y+ H   A    ++ +  + P  +  VY+  SG++A
Sbjct: 65  GYGRTEVAEAIAEQAKELAYYHT-YVGHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDA 123

Query: 168 NELAMLMARLSTGNLG------MIALRNAYHGGSSGTIGLTALNTW--KYPIPQGEIHHV 219
           NE  + +       LG      +I+    YHG    T  LT L+ +   + +P   + H 
Sbjct: 124 NETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHT 183

Query: 220 VNPDPYHGSFGSD-----AARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYL 274
             P  Y  +         +A  A +L++ I       +A FIAE + G GG V    GY 
Sbjct: 184 EAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYW 243

Query: 275 KLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVV 333
             +  +++K   + IADEV TGFGR GS + G +  G+ PD++T+AKG+ +   PL   +
Sbjct: 244 PAIQAVLKKYDILLIADEVVTGFGRLGSMF-GSDHYGIEPDLITVAKGLTSAYAPLSGSI 302

Query: 334 TTPEIANVMAQKIQFN-------TFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLG 386
              ++ +V+ Q    +       T+ G+P+C+A  LA L ++++E    + A+VG++   
Sbjct: 303 VGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERENLVGNAAEVGAYFRA 362

Query: 387 RLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAV---LFEKLRELGVLVGKG 443
           RLR     H ++G+VRG G++  +E V DR ++TP      +   +     E GV + + 
Sbjct: 363 RLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGV-IARA 421

Query: 444 GLHGNVFRIKPPMCFTKDDADFLVDA 469
             HG++    PP+  T+ +AD +V  
Sbjct: 422 MPHGDILGFAPPLVLTRAEADEIVAI 447

Length = 461

>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase

 Score =  200 bits (510), Expect = 1e-59
 Identities = 130/416 (31%), Positives = 196/416 (47%), Gaps = 55/416 (13%)

Query: 82  IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIA 141
            V GK   L+D  G+ YLD  AGI   + GH  PD + A+ EQ+  L H + +Y      
Sbjct: 1   FVSGKGCKLYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHVSNVYHTIPQV 60

Query: 142 DFAEAL-----ASKMPGNLKVVYFVNSGTEANELAMLMAR----LSTGNLG--------- 183
           + A+ L     A +       V+F NSGTEANE A+  AR    +   +           
Sbjct: 61  ELAKRLVASSFADR-------VFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATE 113

Query: 184 MIALRNAYHGGSSGTIGLTALNTWKYPI-PQGEIHHVVNPDPYHGSFGSDAARYAQDLQD 242
            ++  N++HG + G + LT+   ++ P  P       V        +G        +L+ 
Sbjct: 114 FVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVE-------YG--------NLEA 158

Query: 243 HIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS 302
                  GK A    E +QG GG       +L+ +  +  +AG + + DEVQ G GRTG 
Sbjct: 159 ARKLIQKGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTG- 217

Query: 303 HYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNP-VCSAGG 361
           + W  E  GV PDI+T+AK +  GLP+GAV+ T ++A+ +      +TF G P VC+A  
Sbjct: 218 YLWAHEAYGVEPDIMTLAKPLAGGLPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNA-A 276

Query: 362 LAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTP 421
           LAVL  I K    A  A  G +L   LR     +  + +VRG GL+VG++L        P
Sbjct: 277 LAVLDKISKPGFLASVAKKGEYLRELLRRKLGGNPHVKEVRGVGLLVGIQL------DVP 330

Query: 422 AKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477
           A      L +  R+ G+LV   G  G+V R+ PP+  ++ + +  V+ L   +  L
Sbjct: 331 A----GPLVDACRDSGLLVLTAG-KGDVVRLVPPLVISEAELEQAVEILADCLPAL 381

Length = 382

>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score =  201 bits (514), Expect = 2e-59
 Identities = 141/422 (33%), Positives = 213/422 (50%), Gaps = 48/422 (11%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAI--FEQSKLLQHATTIYL 136
           PL I + +  ++ D  G +YLD  AG  T++ GH HPDVL +I     S L  H  T+ L
Sbjct: 41  PLAIAKAQGVWVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLH--TLDL 98

Query: 137 HHAIAD-FAEALASKMPGNLK--VVYFVN-SGTEANELAMLMARLSTGNLGMIALRNAYH 192
              + D F+E L S +PG  K   + F   SG +A E A+ +A+  TG   +I+    YH
Sbjct: 99  TTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYH 158

Query: 193 GGSSGTIGLT----ALNTWKYPIPQGEIHHVVNPDPYH------GSFGSDA-ARYAQDLQ 241
           G + G + +T      N     +P   +  +  P  Y       G  G  A   Y ++  
Sbjct: 159 GMTHGALAVTGNLSPKNAVNGLMP--GVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFI 216

Query: 242 DHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTG 301
           + ++ G   K A  I E IQG GG       +L+ + ++ +K G + I DEVQ GF RTG
Sbjct: 217 EDVESGVR-KPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTG 275

Query: 302 SHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFN---------TFG 352
             +  FE  G+ PDI+ M+K +G GLPL           V+  K +F+         TF 
Sbjct: 276 KMF-AFEHAGIEPDIIVMSKAVGGGLPLA----------VLGIKKEFDAWQPGGHTGTFR 324

Query: 353 GNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMEL 412
           GN +  A GL  L+++ +E    + A+ G  L  +L  LQ+R+  IG+VRGRGLM+G+E+
Sbjct: 325 GNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYPCIGNVRGRGLMIGIEI 384

Query: 413 VTDRKEKT-----PAKAETAVLFEK-LRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFL 466
           V +R+        PA  E A   +K   E G+L+ +GG +GNV R+ PP+  T+ + +  
Sbjct: 385 VDERQPADAMGSYPADGELAAAIQKACFENGLLLERGGRNGNVVRLLPPLLITQAECEEF 444

Query: 467 VD 468
           +D
Sbjct: 445 ID 446

Length = 459

>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional

 Score =  197 bits (503), Expect = 9e-58
 Identities = 130/417 (31%), Positives = 193/417 (46%), Gaps = 31/417 (7%)

Query: 82  IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI-YLHHAI 140
           IV G+  Y++D+ G+RYLD  AG+  V  GH   ++  A  +Q+  L       Y H   
Sbjct: 38  IVRGEGCYIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPLWSYAHPPA 97

Query: 141 ADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARL---STGNLG---MIALRNAYHGG 194
            + AE LA+  PG+L  V+F   G+EA E A  +A+     TG  G   +I+   AYHG 
Sbjct: 98  IELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGT 157

Query: 195 SSGTIGLTALNTWKYP----IPQGEIHHVVNPDPY-HGSFGSDAARYAQDLQDHID---- 245
           + G + +T L  +K P    +P G    V N + Y     G D   + +   D I+    
Sbjct: 158 TQGALAITGLPAFKAPFEPLVPGG--FRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIE 215

Query: 246 FGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW 305
           F     VA    E +Q  GG     PGY + V +I  +   + ++DEV   FGR G   +
Sbjct: 216 FEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLG-EMF 274

Query: 306 GFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIAN-VMAQKIQF---NTFGGNPVCSAG 360
           G E  G +PDI+T AKGI +G  PLGA++ +  +    +     F    TFGG+PV +A 
Sbjct: 275 GCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAV 334

Query: 361 GLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKT 420
            LA L + ++E    H  D        L  L +   I+GDVRG G   G+ELV D+  K 
Sbjct: 335 ALANLDIFEREGLLDHVRDNEPAFRATLEKLLD-LPIVGDVRGDGYFYGIELVKDKATKE 393

Query: 421 PAKAETA------VLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALD 471
               + +       L   L E G+          V ++ PP+   +++ D +   L 
Sbjct: 394 TFTDDESERLLRGFLSPALFEAGLYCRADDRGDPVVQLAPPLISGQEEFDEIEQILR 450

Length = 460

>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional

 Score =  197 bits (502), Expect = 9e-58
 Identities = 122/405 (30%), Positives = 199/405 (49%), Gaps = 33/405 (8%)

Query: 89  YLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALA 148
           Y+ D +G++Y+D F G      G+ HP V+  + EQ   L  +   + +    + AE L 
Sbjct: 65  YIEDVDGKKYMD-FHGNNVHQLGYGHPHVIEKVKEQMAKLPFSPRRFTNETAIECAEKLT 123

Query: 149 SKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWK 208
               G L  V F   GT A  +A+ +AR  TGN  +++L +++HG S   I +     ++
Sbjct: 124 EIAGGELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFR 183

Query: 209 Y---PIPQGEIHHVVNPDPYHGSFGS-DAAR--YAQDLQDHIDFGTSGKVAGFIAETIQG 262
               P+  G +  +     Y G+F   D +   YA  L+  I+    G +  FIAE ++ 
Sbjct: 184 QGMGPLMAG-VERIPPAVSYRGAFPDADGSDVHYADYLEYVIE--KEGGIGAFIAEAVRN 240

Query: 263 VGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKG 322
               V  +  Y K V +I  K   + I DE+  G GRTG  ++  +  G+ PDI+ + KG
Sbjct: 241 TDVQVP-SKAYWKRVREICDKHNVLLIIDEIPNGMGRTG-EWFTHQAYGIEPDILCIGKG 298

Query: 323 IGNGL-PLGAVVTTPEIANVMAQKIQFN--TFGGNPVCSAGGLAVLRVIDKERRQAHCAD 379
           +G GL P+ A++T  +  N  A +I     T   +P+  A  LA + VI++E        
Sbjct: 299 LGGGLVPIAAMITK-DKYNT-AAQISLGHYTHEKSPLGCAAALATIEVIEQEGLLEKVKA 356

Query: 380 VGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA--KAETAVLFEKLRELG 437
               +  RL  ++ ++ +IGDVRG GL+ G+ELVTDR  K  A  +AE AVL+  L    
Sbjct: 357 DSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAE-AVLYRCLN--- 412

Query: 438 VLVGKGGL-----HGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477
                 GL      GNV ++ PP+  T+++    +  L+ +++K+
Sbjct: 413 -----NGLSFKVSQGNVIQLSPPLIITREELTQALAILEEAIAKI 452

Length = 459

>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional

 Score =  194 bits (495), Expect = 3e-57
 Identities = 114/415 (27%), Positives = 187/415 (45%), Gaps = 51/415 (12%)

Query: 74  HYYQKPLNIV--EGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA 131
           H Y  PL +V   GK  +++D  G++Y D  +    V+ GHCHP +L A+  Q++ L   
Sbjct: 8   HNYH-PLPVVLKRGKGVFVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLT 66

Query: 132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR--------LSTGNLG 183
           +  + +  +    + +   + G  KV+  +NSG EA E A+  AR        +      
Sbjct: 67  SRAFYNDVLGLAEKYITD-LFGYDKVL-PMNSGAEAGETALKFARKWGYEVKGIPENQAK 124

Query: 184 MIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYH--GSF--GSDAARYAQD 239
           +I     + G + G    +                  +P  Y+  G F  G +   Y  D
Sbjct: 125 IIFCNGNFSGRTIGACSAST-----------------DPKCYNNFGPFVPGFELVDY-ND 166

Query: 240 LQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGR 299
           ++          VA FI E IQG  G +    GYLK VY++ +K   + I DE+QTG GR
Sbjct: 167 VEALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGR 226

Query: 300 TG---SHYWGFETQGVIPDIVTMAKGIGNGL-PLGAVVTTPEIANVMAQKIQFNTFGGNP 355
           TG   +H      +GV PDIV + K +  GL P+ AV+   ++  V+      +T+GGNP
Sbjct: 227 TGKLLAHDH----EGVKPDIVLLGKALSGGLYPISAVLANDDVMLVIKPGEHGSTYGGNP 282

Query: 356 VCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTD 415
           +  A  +  L V+ +E+   +   +G      L+ L ++   + ++RG+GL+  +     
Sbjct: 283 LACAVAVEALEVLKEEKLAENAQRLGEVFRDGLKELLKKSPWVKEIRGKGLLNAIVF--- 339

Query: 416 RKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDAL 470
                   A    L  KL+E G+L      H N+ R  PP+  TK+  D  ++ +
Sbjct: 340 -DHSDGVNAWDLCL--KLKENGLLAKP--THDNIIRFAPPLVITKEQLDQALEII 389

Length = 400

>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional

 Score =  195 bits (498), Expect = 3e-57
 Identities = 132/432 (30%), Positives = 216/432 (50%), Gaps = 33/432 (7%)

Query: 54  GPSADQVFQKRKQFLGPSI----FHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVS 109
           GP A ++ ++ K+ L P I    F     PL    G    + D +G  ++D  AG    S
Sbjct: 12  GPKAKELIEREKRVLSPGIGVKLF-----PLVPKRGFGALIEDVDGNVFIDFLAGAAAAS 66

Query: 110 CGHCHPDVLNAIFEQSKLLQHATTIYLHHAIA-DFAEALASKMPGNLKVVYFVNSGTEAN 168
            G+ HP ++ A+ EQ  L+QH+   Y H   A   AE LA   P     V F  SG++A 
Sbjct: 67  TGYSHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPIENPKVLFGLSGSDAV 126

Query: 169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVN------P 222
           ++A+ +++ ST    ++A   AYHG    T+G T++  ++    +G    + N      P
Sbjct: 127 DMAIKVSKFSTRRPWILAFIGAYHGQ---TLGATSVAAFQSSQKRGFSPLMPNVVWIPYP 183

Query: 223 DPYHGSFGSDA--------ARYAQDLQDHI--DFGTSGKVAGFIAETIQGVGGAVELAPG 272
           +PY   +G +          R+   L++++        +VA   AE IQG  G V     
Sbjct: 184 NPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPEN 243

Query: 273 YLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAV 332
           + K +  ++ + G + + DEVQTG GRTG  ++  E   V PD++   KG+ +G+ L  V
Sbjct: 244 FFKELKKLLDEHGILLVMDEVQTGIGRTGK-WFASEWFEVKPDLIIFGKGVASGMGLSGV 302

Query: 333 VTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQ 392
           +   E+ ++ +      T   NPV SA   A L +I++E    +   VG  +  RL  ++
Sbjct: 303 IGRKELMDLTSGSALL-TPAANPVISAAAEATLEIIEEENLLKNALKVGEFIKKRLLEMK 361

Query: 393 ERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRI 452
           E  ++IGDVRG+GLM+G+E+V  ++   P    T  +  +  ELG+++   G+ GNV RI
Sbjct: 362 ESFEVIGDVRGKGLMIGVEIV--KENGKPDPELTGKICWRAFELGLILPSYGMFGNVIRI 419

Query: 453 KPPMCFTKDDAD 464
            PP+  TK+ A+
Sbjct: 420 TPPLVITKEIAE 431

Length = 457

>gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional

 Score =  194 bits (495), Expect = 1e-56
 Identities = 136/413 (32%), Positives = 204/413 (49%), Gaps = 33/413 (7%)

Query: 85  GKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH----AI 140
            K   L D +G + LDAFAG+  V+ G+    ++ A  EQ + L +AT  Y H     AI
Sbjct: 35  AKGATLTDASGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATG-YFHFGSEPAI 93

Query: 141 ADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARL---STGNLG---MIALRNAYHGG 194
              A  LA + PG+L  VYF   G++A + A+   R    +TG       I+L   YHG 
Sbjct: 94  -RLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGS 152

Query: 195 SSGTIGLTALNTWK--YPIPQGEIHHVVNPDPYHGSFGSDA----ARYAQDLQDHIDFGT 248
           SS   GLTAL  +   + +P    H + +P PY    G D     A     L+  +    
Sbjct: 153 SSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELG 212

Query: 249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE 308
           +  VA F  E IQG GG +    G+LK + +  R+ G + +ADEV TGFGRTG  +   E
Sbjct: 213 ADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLF-ACE 271

Query: 309 TQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFN-------TFGGNPVCSAG 360
            +GV+PD++T+AKG+ +G +P+GAV+ +  +   +A             T+  +PV +A 
Sbjct: 272 AEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAV 331

Query: 361 GLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKT 420
           GL VLR+  +    A+    G      L  L+  H ++GDVRGRGL+  +ELV D+  KT
Sbjct: 332 GLEVLRLYHEGGLLANGQKAGPRFAAGLDALRA-HPLVGDVRGRGLLGALELVADKATKT 390

Query: 421 PAKAETAV---LFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDAL 470
           P  A       +F++    G++    G    V    P +C T+ + D + +  
Sbjct: 391 PFDAALDPADRIFDRAYANGLVFRAFG--DGVLGFAPALCCTEGEFDLIFERT 441

Length = 459

>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases

 Score =  188 bits (478), Expect = 2e-54
 Identities = 125/406 (30%), Positives = 193/406 (47%), Gaps = 28/406 (6%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFE--QSKLLQHATTIYL 136
           P    + +  ++ D  G+ YLD  AG  T++ GH HP++   I +  QS L  H  T+ L
Sbjct: 22  PTAFAKAQGCWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLH--TLDL 79

Query: 137 HHAIAD-FAEALASKMPG---NLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYH 192
              + D F EAL + +P    + K+ +   SG +A E A+ +A+  TG   +I+    +H
Sbjct: 80  TTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFH 139

Query: 193 GGSSGTIGLT----ALNTWKYPIPQGEI----HHVVNPDPYHGSFGSDAARYAQDLQDHI 244
           G + G + +T    A N     +P  +     H    P    G  GS+A+      ++ I
Sbjct: 140 GMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEY--FENFI 197

Query: 245 DFGTSG--KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS 302
           +   SG  K A  I E IQG GG V     +L+ + ++ RK     I DEVQ GFGR+G+
Sbjct: 198 EDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGT 257

Query: 303 HYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGL 362
             + FE  G+ PD V M+K +G GLPL  ++  PE  +         TF GN +    G 
Sbjct: 258 -MFAFEHAGIEPDFVVMSKAVGGGLPLAVLLIAPEF-DAWQPAGHTGTFRGNQLAMVTGT 315

Query: 363 AVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKT-- 420
             L     +    +  + G  +   L  + + H  IG+VRGRGLM G+ +V +R+ K   
Sbjct: 316 EALNYWKDDNLAQNAQERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDAT 375

Query: 421 ---PAKAETAVLFEK-LRELGVLVGKGGLHGNVFRIKPPMCFTKDD 462
              P   E A   +    E G+L+  GG  G VFR+  P+   +++
Sbjct: 376 GAYPRDCELAAAIQGACFENGLLLETGGREGEVFRLLCPITIDQEE 421

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442

>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional

 Score =  186 bits (475), Expect = 3e-54
 Identities = 134/383 (34%), Positives = 192/383 (50%), Gaps = 15/383 (3%)

Query: 90  LFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH-ATTIYLHHAIADFAEALA 148
           L+D  GR Y+D  AGI  ++ GH HP V+ A+ +Q     H A  I  + +    AE + 
Sbjct: 34  LWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERIN 93

Query: 149 SKMP--GNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTA-LN 205
           +  P  G  K  +F  +G EA E A+ +AR  TG  G+IA   A+HG +  T+ LT  + 
Sbjct: 94  ALAPIDGPAKTAFF-TTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVA 152

Query: 206 TWKY---PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQG 262
            +K    P P G I H + P+  HG    +A    + L    D     +VA  + E IQG
Sbjct: 153 PYKVGFGPFP-GSIFHALYPNELHGVSVEEALSSVERLF-KADIAPD-QVAAILLEPIQG 209

Query: 263 VGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKG 322
            GG     P ++  +  +  + G + IADEVQTGF RTG  +   E   V PD++TMAK 
Sbjct: 210 EGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLF-AMEYYDVKPDLITMAKS 268

Query: 323 IGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGS 382
           +G G+P+ AVV   E+ +  A      T+ GNP+  A  LAVL VI +E+       +G+
Sbjct: 269 LGGGMPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGA 328

Query: 383 HLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGK 442
           HL+  L   +     I D+R RG MV +E   D +   P+   T     +  E G+L+  
Sbjct: 329 HLVEVLEKAKASCPAIVDIRARGSMVAVEF-NDPQTGKPSPEFTRQYQRQALEEGLLLLS 387

Query: 443 GGLHGNVFRIKPPMCFTKDDADF 465
            G+HGNV R   P+  T  DA F
Sbjct: 388 CGVHGNVIRFLYPL--TIPDAQF 408

Length = 421

>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional

 Score =  183 bits (467), Expect = 1e-53
 Identities = 118/392 (30%), Positives = 196/392 (50%), Gaps = 34/392 (8%)

Query: 74  HYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT 133
           +Y +  +  V+ +  YL D +G++YLD  +GI   + G  HP V  A+ +Q+ L+ H+  
Sbjct: 7   NYKRAAIEFVKAEGNYLIDTDGKKYLDFSSGIGVTNLGF-HPQVQQALQKQAGLIWHSPN 65

Query: 134 IYLHHAIADFAEALASKMPGNLK-VVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYH 192
           +YL+       E +A K+ G+   + +F NSG EANE A+ +AR +TG   +I  +N++H
Sbjct: 66  LYLN----SLQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFH 121

Query: 193 GGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKV 252
           G + G++  T          Q +I         H S+    A +  DL + +    +   
Sbjct: 122 GRTFGSMSATG---------QDKIKDGFGDGVPHFSY----AIF-NDL-NSVKALVNKNT 166

Query: 253 AGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV 312
           A  + E +QG  G +     ++K + D  ++ G + I DEVQTG GRTG  Y  FE  G+
Sbjct: 167 AAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLY-AFEHYGI 225

Query: 313 IPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKER 372
            PDI T+AKG+ NG+P+GA++    +          +TFGGN +  A   A L ++    
Sbjct: 226 EPDIFTLAKGLANGVPVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAG 285

Query: 373 RQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEK 432
                 + G++L  +L+   +  + +  VRG G M+G+E   D  +          L E 
Sbjct: 286 FLEQALENGNYLQEQLQKALQDKETVTTVRGLGYMIGIETTADLSQ----------LVEA 335

Query: 433 LRELGVLVGKGGLHGNVFRIKPPMCFTKDDAD 464
            R+ G++V   G   NV R+ PP+  TK++ +
Sbjct: 336 ARDKGLIVLTAG--TNVIRLLPPLTLTKEEIE 365

Length = 375

>gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family

 Score =  181 bits (462), Expect = 1e-52
 Identities = 122/393 (31%), Positives = 185/393 (47%), Gaps = 42/393 (10%)

Query: 83  VEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIAD 142
           V G+   ++D+ G+ Y+D   GI   + GH HP+++ A+ EQ+  L H    Y +  +  
Sbjct: 22  VRGEGSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGNGYTNEPVLR 81

Query: 143 FAEALASKMPGNLKVVYFVNSGTEANELAMLMAR-LSTGNLG-----MIALRNAYHGGSS 196
            A+ L      +   V+F NSG EANE A+ +AR  +    G     ++A +N++HG + 
Sbjct: 82  LAKKLVDATFADK--VFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTL 139

Query: 197 GTIGLTALNTWKY-----PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGK 251
            T+  +     KY     P+P G I H     PY     +D A      +  I      K
Sbjct: 140 FTV--SVGGQPKYSQGFAPLPGG-IKHA----PY-----NDLA----AAKALIS----DK 179

Query: 252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQG 311
               I E IQG GG V   P +LK + ++  +   + I DEVQTG GRTG  Y  +   G
Sbjct: 180 TCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELY-AYMHYG 238

Query: 312 VIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKE 371
           V PDI+T AK +G G P+GA++TT EIA  +       T+GGNP+  A    VL +++  
Sbjct: 239 VTPDILTSAKALGGGFPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTP 298

Query: 372 RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFE 431
              A         +  L  +  R+++  ++RG+GL++G  L    + K       A    
Sbjct: 299 ELLAGVKQRHDLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEAYQGKAKQFVNAAA--- 355

Query: 432 KLRELGVLVGKGGLHGNVFRIKPPMCFTKDDAD 464
              E GV+    G   NV R  P +  + DD D
Sbjct: 356 ---EEGVIALIAG--PNVVRFAPSLVISDDDID 383

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397

>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase

 Score =  180 bits (458), Expect = 7e-52
 Identities = 121/411 (29%), Positives = 200/411 (48%), Gaps = 54/411 (13%)

Query: 74  HYYQKPLNIVEGKMQ--YLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA 131
           H Y  PL +V  K +  +++D  G+RYLD  +    V+ GHCHP ++ A+ EQ++ L  +
Sbjct: 14  HNYH-PLPVVFSKAEGVHVWDVEGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLS 72

Query: 132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR--------LSTGNLG 183
           +  + +    +FAE + +K+ G  KV+  +N+G EA E A+ +AR        +      
Sbjct: 73  SRAFYNDVFGEFAEYV-TKLFGYDKVLP-MNTGAEAVETAIKLARKWGYKVKGIPENQAI 130

Query: 184 MIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDH 243
           +++ +  +HG    T+G  +++T              +PD     FG     + +   ++
Sbjct: 131 IVSAKGNFHGR---TLGAISMST--------------DPDSRTN-FGPYVPGFKKIPYNN 172

Query: 244 ID-----FGTSG-KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGF 297
           ++         G  V  FI E IQG  G V    GYLK V ++  K   + IADE+QTG 
Sbjct: 173 LEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGL 232

Query: 298 GRTG---SHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGG 353
           GRTG           + V PDIV + K +  G  P+ AV+   ++   +      +T+GG
Sbjct: 233 GRTGKLLCVDH----ENVKPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGG 288

Query: 354 NPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELV 413
           NP+  A  +A L V+++E+   +   +G     +L+ L     II +VRGRGL+  + + 
Sbjct: 289 NPLACAVAVAALEVLEEEKLAENAEKLGEIFRDQLKKLP--KPIITEVRGRGLLNAIVI- 345

Query: 414 TDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDAD 464
              + KT   A    L  KL+E G+L      HGN+ R+ PP+  T++  D
Sbjct: 346 --DESKTGRTAWD--LCLKLKEKGLLAKP--THGNIIRLAPPLVITEEQLD 390

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401

>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  180 bits (459), Expect = 2e-51
 Identities = 135/433 (31%), Positives = 205/433 (47%), Gaps = 59/433 (13%)

Query: 77  QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL 136
           + PL I  G+ + L+D NG  Y D  + I     GH  P++  AI EQ   + H+T + L
Sbjct: 37  EDPLIIERGEGRKLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLGL 96

Query: 137 HHAIA-DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRN 189
            +  +   AE L   +P  LK V++ +SG  A E+A+ MA     N G       + L+N
Sbjct: 97  ANVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKN 156

Query: 190 AYHGGSSGTIGLTALNTWKYPIPQGEIHHVVN-----------PDPYHGSFGSDAARYAQ 238
           AYHG + G + + A++ +         H V +           P  Y   +G+D A   +
Sbjct: 157 AYHGDTIGAVSVGAIDLF---------HQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVK 207

Query: 239 D--------LQDHIDFGTSGKVAGFIAET-IQGVGGAVELAPGYLKLVYDIVRKAGGVCI 289
                    L++  +     ++A  I E  +QG GG + +  GYLK + ++  K   + I
Sbjct: 208 KHLEELEELLKEKHE-----EIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFI 262

Query: 290 ADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVM-----A 343
            DEV TGFGRTG  +   E + V PDI+T  KG+  G LP+   VTT EI N        
Sbjct: 263 TDEVATGFGRTGKMF-ACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEE 321

Query: 344 QKIQF--NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQER-HDIIGD 400
           QK  F  +++ GNP+  A  LA L + +K       A    ++  +L  L    H  +GD
Sbjct: 322 QKTFFHGHSYTGNPLGCAVALANLELYEKTNLIEQVARKTEYVATQLEDLFALKH--VGD 379

Query: 401 VRGRGLMVGMELVTDRKEKTPAKAETAVLFE---KLRELGVLVGKGGLHGNVFRIKPPMC 457
           +R  GLMVG+ELV +++ K P +    V  +   + RELG+L       GN     PP+ 
Sbjct: 380 IRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRP---LGNTIVFMPPLA 436

Query: 458 FTKDDADFLVDAL 470
            T D+ D ++  L
Sbjct: 437 STIDELDEMLRIL 449

Length = 460

>gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed

 Score =  178 bits (453), Expect = 4e-51
 Identities = 124/406 (30%), Positives = 191/406 (47%), Gaps = 68/406 (16%)

Query: 83  VEGKMQYLFDENGRRYLDAFAGIVTVSC-GHCHPDVLNAIFEQSKLLQHATTIYLHHAIA 141
           V G+   ++D+ G+ Y+D FAG + V+  GHCHP ++ A+ EQ + L H + ++ +    
Sbjct: 27  VRGEGSRVWDQQGKEYID-FAGGIAVTALGHCHPALVKALKEQGEKLWHISNVFTNEP-- 83

Query: 142 DFAEALASKMPGNL--KVVYFVNSGTEANELAMLMAR------LSTGNLGMIALRNAYHG 193
             A  LA K+      + V+F NSG EANE A  +AR             +IA  N++HG
Sbjct: 84  --ALRLAKKLIDATFAERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHG 141

Query: 194 GS--SGTIGLTALNTWKY-----PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF 246
            +  + ++G       KY     P P   I HV         F   AA     ++  ID 
Sbjct: 142 RTLFTVSVGGQP----KYSDGFGPKPAD-ITHV--------PFNDLAA-----VKAVID- 182

Query: 247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG 306
                    + E IQG GG +   P +L+ + ++  +   + I DEVQTG GRTG  +  
Sbjct: 183 ---DHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLF-A 238

Query: 307 FETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLR 366
           +   GV PDI+T AK +G G P+GA++TT EIA+        +T+GGNP+  A   AV  
Sbjct: 239 YMHYGVTPDILTSAKALGGGFPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFD 298

Query: 367 VID--------KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKE 418
           +I+        K RRQ          +  L+ + +++ +  ++RG GL++G EL    K 
Sbjct: 299 IINTPEVLEGVKARRQR--------FVDGLQKINQKYGVFSEIRGMGLLIGAELKPQYKG 350

Query: 419 KTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDAD 464
           +       A       E GV+V   G   +V R  P +   + D D
Sbjct: 351 RARDFLNAAA------EEGVMVLVAG--PDVLRFAPSLVIEEADID 388

Length = 403

>gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase; Provisional

 Score =  175 bits (446), Expect = 1e-50
 Identities = 133/387 (34%), Positives = 193/387 (49%), Gaps = 46/387 (11%)

Query: 76  YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY 135
           Y+K L +V G+  Y++D  GRRYLD  AGI     GH HP+ +  + EQ + L  A  ++
Sbjct: 4   YRKRLRLVRGEGIYVWDSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAGPMF 63

Query: 136 LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGS 195
            H    +  E L+  +  N + VY  NSGTEA E A+  ARL TG   +IA+ NA+HG +
Sbjct: 64  EHEEKEEMLEELSKWV--NYEYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRT 121

Query: 196 SGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGS-DAARYAQDLQDHIDFGTSGKVAG 254
            G   L+A  TWK P  + +   +V P   H  F   +AA+ A           + + A 
Sbjct: 122 MGA--LSA--TWK-PKYREDFEPLV-PGFKHIPFNDVEAAKEA----------ITKETAA 165

Query: 255 FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIP 314
            I E IQG GG V     ++K + D+    G + IADEVQ+G  RTG  +   E   V P
Sbjct: 166 VIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGK-FLAIEHYKVEP 223

Query: 315 DIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQ 374
           DIVTM KGIGNG+P+   +T  ++     +    +TFGGNP+        LR++ +ER  
Sbjct: 224 DIVTMGKGIGNGVPVSLTLTNFDV----ERGKHGSTFGGNPLACKAVAVTLRILRRERLV 279

Query: 375 AHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR 434
               +         + ++ + + +   RGRGLM+G+ L      K P         E+L+
Sbjct: 280 EKAGE---------KFIEIKGERVVTTRGRGLMIGIVL------KKPV----GKYVEELQ 320

Query: 435 ELGVLVGKGGLHGNVFRIKPPMCFTKD 461
             G LV   G    V R+ PP+  +KD
Sbjct: 321 NRGYLVHTAG--QRVIRLLPPLIISKD 345

Length = 364

>gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

 Score =  174 bits (442), Expect = 2e-49
 Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 68/406 (16%)

Query: 83  VEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIAD 142
           V G+   L+D+ G+ Y+D   GI   + GH HP +  A+ EQ+    H    Y +  +  
Sbjct: 26  VRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGNGYTNEPVLR 85

Query: 143 FAEAL-----ASKMPGNLKVVYFVNSGTEANELAMLMAR------LSTGNLGMIALRNAY 191
            A+ L     A +       V+F NSG EANE A+ +AR        +   G++A +NA+
Sbjct: 86  LAKKLIDATFADR-------VFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAF 138

Query: 192 HGGSSGTIGLTALNTWKY-----PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF 246
           HG +  T+  +A    KY     P+P   I H    D        ++A         ID 
Sbjct: 139 HGRTLFTV--SAGGQPKYSQDFAPLPPD-IRHAAYND-------LNSAS------ALIDD 182

Query: 247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG 306
            T       I E IQG GG +     +L+ + ++  +   + I DEVQTG GRTG   + 
Sbjct: 183 QT----CAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTG-ELYA 237

Query: 307 FETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLR 366
           +   GV PD++T AK +G G P+GA++TT + A+VM       T+GGNP+ SA    VL 
Sbjct: 238 YMHYGVTPDVLTTAKALGGGFPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLE 297

Query: 367 VID--------KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKE 418
           +I+        K+R            + RL T+  R+ +  ++RG GL++G  L  +   
Sbjct: 298 LINTPEMLNGVKQRHDW--------FVERLNTINARYGLFSEIRGLGLLIGCVLNAEYAG 349

Query: 419 KTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDAD 464
           K    ++ A       + GV+V   G   NV R  P +  ++++  
Sbjct: 350 KAKQISQEAA------KAGVMVLIAG--PNVVRFAPALNISEEEIT 387

Length = 406

>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  173 bits (442), Expect = 3e-49
 Identities = 120/416 (28%), Positives = 183/416 (43%), Gaps = 42/416 (10%)

Query: 77  QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI-- 134
             P+ IV  +  YL+  +GR  +DA +     + GH HP +  AI EQ   L H   I  
Sbjct: 23  PPPIPIVRAEGAYLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDH--VIFA 80

Query: 135 -YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMA---RLSTGNLG---MIAL 187
            + H      A+ L +  PG L  V+F +SG+ A E+A+ MA     + G  G    ++L
Sbjct: 81  GFTHEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSL 140

Query: 188 RNAYHGGSSGT--IGLTAL--NTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDH 243
           R  YHG + GT  +G        +   + +     V  P P  G   +        L+ H
Sbjct: 141 RGGYHGDTIGTMSVGDRGGMHALYTPLLFE----QVTAPFPPDGYEQATLDALEALLEKH 196

Query: 244 IDFGTSGKVAGFIAE-TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS 302
                +G++A FI E  +QG GG +   P YL  +  I  + G + I DE+ TGFGRTG+
Sbjct: 197 -----AGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGT 251

Query: 303 HYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVM----AQKIQFN--TFGGNP 355
            +   E  GV PDI+ ++KG+  G LPL A + T EI          K   +  ++  NP
Sbjct: 252 LF-ACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANP 310

Query: 356 VCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTD 415
           +  A   A L + + E      A + + L   L   ++    + DVR  G +  +EL   
Sbjct: 311 LACAAANASLDLFEDEPVLERVAALSAGLAEGLEPFRD-LPGVADVRVLGAIGAVELDR- 368

Query: 416 RKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALD 471
                  + +   L     E GVL+      GN   + PP   T ++ D + DA+ 
Sbjct: 369 ----PVLERDGPALRAFALERGVLLRP---LGNTIYLMPPYIITAEELDRITDAIV 417

Length = 423

>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional

 Score =  172 bits (436), Expect = 9e-49
 Identities = 128/409 (31%), Positives = 190/409 (46%), Gaps = 46/409 (11%)

Query: 71  SIFHYY---QKPLNIV--EGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQS 125
           S+ HYY    +P  +V   G+   ++D+ GR YLD  AGI     GH  PD++ A+ EQ+
Sbjct: 10  SLAHYYLPVYRPRQVVLERGQGSRVWDDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQA 69

Query: 126 KLLQHATTIYLHHAIADFAEAL--ASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG 183
             L H + ++        AE L  AS+     + V+  NSGTEANE A+ + R    + G
Sbjct: 70  GKLWHTSNVFYSAPPLKLAEELVTASRFA---EKVFLCNSGTEANEAAIKLVRKWASSQG 126

Query: 184 -------MIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARY 236
                  ++  R ++HG +   +  TA         Q +      P P  G F     RY
Sbjct: 127 RPADKRVIVTFRGSFHGRTLAAVTATA---------QPKYQEGYEPLP--GGF-----RY 170

Query: 237 AQDLQDHIDFGT---SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEV 293
             D  D          G VA  + E IQG GG +  APG+L  V  +  +   + + DE+
Sbjct: 171 V-DFNDVEALEAAMAGGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEI 229

Query: 294 QTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGG 353
           Q G GRTG+ +  ++ Q V PDIVT+AK +G G P+GA++  P++A  M       TFGG
Sbjct: 230 QCGMGRTGTLFAHWQEQ-VTPDIVTLAKALGGGFPIGAMLAGPKVAETMQFGAHGTTFGG 288

Query: 354 NPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELV 413
           NP+ +A     LR +   +  A+ A   + L   L  L     +   VRGRGLM+G  L 
Sbjct: 289 NPLAAAVARVALRKLASPQIAANVARQSAALRAGLEALNAEFGVFAQVRGRGLMLGAVLA 348

Query: 414 TDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDD 462
                +  A  + A       E G+L+ + G   +V R  P +  T  +
Sbjct: 349 PAHAGQAGAILDLAA------EHGLLLLQAG--PDVLRFVPALNLTDAE 389

Length = 408

>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed

 Score =  170 bits (432), Expect = 3e-48
 Identities = 124/421 (29%), Positives = 203/421 (48%), Gaps = 55/421 (13%)

Query: 74  HYYQKPLNIV--EGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA 131
           H Y KPL++V   G+  +++D +G RYLD  +    V+ GHCHP +L A+ EQ+  L   
Sbjct: 18  HNY-KPLDVVLTRGEGVWVWDTDGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLT 76

Query: 132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR--------LSTGNLG 183
           +  + +  +A   E LA+ + G+ KV+  +NSG EA E A+   R        +  G   
Sbjct: 77  SRAFRNDQLAPLYEELAA-LTGSHKVLP-MNSGAEAVETAIKAVRKWGYEVKGVPEGQAE 134

Query: 184 MIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARY------- 236
           +I   + +HG +   +G +                  +PD   G FG     +       
Sbjct: 135 IIVCADNFHGRTLSIVGFST-----------------DPDA-RGGFGPFTPGFRVVPFGD 176

Query: 237 AQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG 296
           A+ L+  I   T   VA F+ E IQG  G +    GY   V ++        I DE+QTG
Sbjct: 177 AEALEAAI---TPNTVA-FLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTG 232

Query: 297 FGRTGSHYWGFETQGVIPDIVTMAKGIGNGL-PLGAVVTTPEIANVMAQKIQFNTFGGNP 355
            GRTG      E +G+  D+  + K +  G  P+ AV++  E+  V+      +TFGGNP
Sbjct: 233 LGRTGK-LLAEEHEGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNP 291

Query: 356 VCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTD 415
           +  A   A L+V+ +E    + A++G++ L  LR++  R +I+ +VRGRGLM+ +EL   
Sbjct: 292 LACAVARAALKVLTEEGMIENAAEMGAYFLEGLRSI--RSNIVREVRGRGLMLAVELEP- 348

Query: 416 RKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMS 475
             E   A+       E L+E G+L      H +  R+ PP+  T++  D+ ++ +   ++
Sbjct: 349 --EAGGARQ----YCEALKERGLLAKD--THDHTIRLAPPLVITREQVDWALEQIAKVLA 400

Query: 476 K 476
            
Sbjct: 401 H 401

Length = 401

>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase

 Score =  167 bits (423), Expect = 1e-46
 Identities = 125/395 (31%), Positives = 188/395 (47%), Gaps = 31/395 (7%)

Query: 85  GKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQ-SKLLQHATTIYLHHAIADF 143
           G +  L D  G  ++D   G    + GH +P+V+ A+  Q +K   H+  + L    A  
Sbjct: 64  GGLNTLIDTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHSQEL-LDPLRALL 122

Query: 144 AEALASKMPGNLKVVYFVNSGTEANELAMLMARL---STGNLGMIALRNAYHGGSSGTIG 200
           A+ LA+  PG LK  +F NSGTE+ E A+ +A+      G    IA   A+HG S G + 
Sbjct: 123 AKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALS 182

Query: 201 LTALNTWKYP-IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAET 259
            TA   ++ P +P       + P  +H +FG   A      +      T   VA  I E 
Sbjct: 183 ATAKPAFRKPFMP-------LLPGFHHVAFGDIEAMLKALNECK---KTGDDVAAIILEP 232

Query: 260 IQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTM 319
           IQG GG +    GYL  V  +  + G + I DEVQTG GRTG  +   E +GV PDI+ +
Sbjct: 233 IQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMF-ACEHEGVQPDILCL 291

Query: 320 AKGIGNG-LPLGAVVTTPEIANVMAQK--IQFNTFGGNPVCSAGGLAVLRVIDKERRQAH 376
           AK +G G +P+GA + T  + +V+     +   TFGGNP+  A  LA +  + ++   A 
Sbjct: 292 AKALGGGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQ 351

Query: 377 CADVGSHLLGRLRTL-QERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEK-LR 434
            A  G  LL   + L  E  D+I + RG+GL++ +E             E    F K L 
Sbjct: 352 AAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEFR---------DNEIGYAFAKELF 402

Query: 435 ELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDA 469
           +  +LV     +    RI+PP+  T +    ++ A
Sbjct: 403 QQNILVAGTLNNAKSIRIEPPLTITIEQCALVIKA 437

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442

>gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional

 Score =  165 bits (420), Expect = 6e-46
 Identities = 130/422 (30%), Positives = 195/422 (46%), Gaps = 42/422 (9%)

Query: 77  QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL 136
             P  +V  +  Y  D +GR+ LD  AG+   + GH  P+++ A+  Q+  L +A    +
Sbjct: 30  AAPRLLVSAEGMYYTDADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPAFQM 89

Query: 137 HHAIA-DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARL---STGNLG---MIALRN 189
            H +A + AE LA   PG L  V+F NSG+E+ + A+ +A     + G      +I    
Sbjct: 90  GHPLAFELAERLAELAPGGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRER 149

Query: 190 AYHGGSSGTI---GLTALNTWKYPIPQGEIH--HVVNPD--------PYHGSFGSDAARY 236
            YHG   G I   G+         +  G  H  H ++          P HG      A  
Sbjct: 150 GYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHG------AEL 203

Query: 237 AQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG 296
           A DL+  +    +  +A  I E + G  G +    GYL+ + +I  K G + I DEV TG
Sbjct: 204 ADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITG 263

Query: 297 FGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQ----KIQF--- 348
           FGR G   +  E  GV PDI+T AKG+ NG +P+GAV+ + EI +   Q     I+F   
Sbjct: 264 FGRLG-AAFAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHG 322

Query: 349 NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMV 408
            T+  +PV  A GLA L +  +E      A++  +    + +L+    +I D+R  GL+ 
Sbjct: 323 YTYSAHPVACAAGLATLDIYREEDLFERAAELAPYFEDAVHSLKGLPHVI-DIRNIGLVA 381

Query: 409 GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVD 468
           G+EL    +   P        F K  E G+LV      G+   + PP+   K   D LVD
Sbjct: 382 GIEL--APRPGAPGARGYEA-FMKCFEKGLLVRYT---GDTIALSPPLIIEKAQIDELVD 435

Query: 469 AL 470
           AL
Sbjct: 436 AL 437

Length = 445

>gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional

 Score =  164 bits (415), Expect = 1e-45
 Identities = 124/384 (32%), Positives = 183/384 (47%), Gaps = 17/384 (4%)

Query: 90  LFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH-ATTIYLHHAIADFAEAL- 147
           L D  G  Y+D  AGI  ++ GH HPD++ A+ +Q +   H A  I  + +    AE + 
Sbjct: 34  LKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKIN 93

Query: 148 -ASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTA-LN 205
             + + G  K  +F  +G EA E A+ +AR  TG  G+IA    +HG +  T+ LT  + 
Sbjct: 94  ALAPVSGQAKTAFF-TTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVA 152

Query: 206 TWKY---PIPQGEIHHVVNPDPYHGSFGSDAARYAQDL-QDHIDFGTSGKVAGFIAETIQ 261
            +K    P P G ++HV  P   HG    D+    + L +  I+   + +VA  I E +Q
Sbjct: 153 PYKIGFGPFP-GSVYHVPYPSDLHGISTQDSLDAIERLFKSDIE---AKQVAAIIFEPVQ 208

Query: 262 GVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAK 321
           G GG        +  +  +  + G V IADEVQ+GF RTG  +   +     PD++TMAK
Sbjct: 209 GEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLF-AMDHYADKPDLMTMAK 267

Query: 322 GIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVG 381
            +  G+PL  VV    I +  A      T+ GNP+  A   AVL +IDKE        +G
Sbjct: 268 SLAGGMPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLG 327

Query: 382 SHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVG 441
             L   L   +E    I  VRG G M+  E   D +   P+ A    + ++    G+L+ 
Sbjct: 328 QRLKNTLIDAKESVPAIAAVRGLGSMIAAEF-NDPQTGEPSAAIAQKIQQRALAQGLLLL 386

Query: 442 KGGLHGNVFRIKPPMCFTKDDADF 465
             G +GNV R   P+  T  DA F
Sbjct: 387 TCGAYGNVIRFLYPL--TIPDAQF 408

Length = 421

>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase

 Score =  163 bits (414), Expect = 6e-45
 Identities = 124/426 (29%), Positives = 207/426 (48%), Gaps = 50/426 (11%)

Query: 74  HYYQKPLNIV--EGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA 131
           H Y  P+ +V    K   ++D  G++YLD  +    V+ GHCHP ++ A+ EQ++ L  +
Sbjct: 52  HNYH-PIPVVFSRAKGSRIWDPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLS 110

Query: 132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR--------LSTGNLG 183
           +  + +    +FAE L + M G   V+  +N+G E  E A+ +AR        +      
Sbjct: 111 SRAFYNDKFPEFAEYL-TSMFGYDMVLP-MNTGAEGVETAIKLARKWGYEKKGIPKNEAI 168

Query: 184 MIALRNAYHGGSSGTIGLTALNTWKY---PIPQGEIHHVVNPDPYHGSFGSDAARYAQDL 240
           +++    +HG +   I ++  N       P+  G  H  V+       FG D     +  
Sbjct: 169 IVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPG--HLKVD-------FG-DLDALEKIF 218

Query: 241 QDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRT 300
           ++  D     ++A F+ E IQG  G V    GYLK V ++  K   + IADE+QTG  RT
Sbjct: 219 EEDGD-----RIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLART 273

Query: 301 GSHY---WGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGGNPV 356
           G      W    + V PD+V + K +G G +P+ AV+   ++   +      +TFGGNP+
Sbjct: 274 GKMLACDW----EEVRPDVVILGKALGGGVIPVSAVLADKDVMLCIKPGEHGSTFGGNPL 329

Query: 357 CSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERH-DIIGDVRGRGLMVGMELVTD 415
            SA  +A L+V+  E+     A +G  L  +L+ +Q++   +I +VRGRGL+  + L  +
Sbjct: 330 ASAVAMAALQVVQDEKLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAVVL--N 387

Query: 416 RKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDAD----FLVDALD 471
             +  P  A    L  KL+E G+L      H  + R+ PP+  ++D+       L D L+
Sbjct: 388 SPKLGPVSAYDVCL--KLKERGLLAKP--THDTIIRLAPPLSISEDELQECSKALSDVLE 443

Query: 472 YSMSKL 477
           + + KL
Sbjct: 444 HDLPKL 449

Length = 474

>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional

 Score =  159 bits (403), Expect = 4e-44
 Identities = 113/420 (26%), Positives = 193/420 (45%), Gaps = 61/420 (14%)

Query: 75  YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI 134
           Y+  P+ I E +  ++ D  G RY+D  +    V+ GH HP ++ A+ +Q+  +   +  
Sbjct: 19  YHPLPIVISEAEGVWVKDPEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTSRA 78

Query: 135 YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR--------LSTGNLGMIA 186
           +    +  + E +A K+ G   V+  +N+G EA E A+  AR        +      +IA
Sbjct: 79  FHSDQLGPWYEKVA-KLTGKDMVLP-MNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIA 136

Query: 187 LRNAYHGGSSGTIGLTALNTWKY---P-------IPQGEIHHVVNPDPYHGSFGSDAARY 236
               +HG +   + L++   +K    P       IP G++               +A + 
Sbjct: 137 CEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYGDL---------------EALKA 181

Query: 237 AQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG 296
           A      I   T    A F+ E IQG  G      G+LK   ++ ++   + IADE+QTG
Sbjct: 182 A------ITPNT----AAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTG 231

Query: 297 FGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGGNP 355
            GRTG  +   +   V PD+  + K +G G  P+  V    +I  V       +TFGGNP
Sbjct: 232 LGRTGKLF-ACDWDNVTPDMYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNP 290

Query: 356 VCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTD 415
           +  A  +A L V+++E+      ++G +   +L+ +   + +I +VRGRGL +G+EL   
Sbjct: 291 LACAVSIAALEVLEEEKLPERSLELGEYFKEQLKEID--NPMIKEVRGRGLFIGVEL--- 345

Query: 416 RKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMS 475
                PA+       E L+E G+L  +   H  V R  PP+  TK++ D+  + +   +S
Sbjct: 346 ---NEPARP----YCEALKEEGLLCKE--THETVIRFAPPLVITKEELDWAFEKIKAVLS 396

Length = 396

>gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional

 Score =  158 bits (402), Expect = 2e-43
 Identities = 127/427 (29%), Positives = 195/427 (45%), Gaps = 48/427 (11%)

Query: 75  YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI 134
           + + P  +V  K  Y    +GRR LD  AG+  V+ GH  P+++ A+  Q+  L +A   
Sbjct: 25  FKKAPRLLVAAKGMYYTTHDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAF 84

Query: 135 YLHHAIA-DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIAL 187
            + H  A + A  +A   PG L  V+F NSG+E+ + A+ +A       G      +I  
Sbjct: 85  QMGHPKAFELANRIAEIAPGGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGR 144

Query: 188 RNAYHGGSSGTIGLTAL--NTWKY-PIPQGEIH--HVVNP--------DPYHGSFGSDAA 234
              YHG   G I +  +  N   +  +  G  H  H ++          P HG      A
Sbjct: 145 ERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHG------A 198

Query: 235 RYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQ 294
             A +L+  +    +  +A  I E + G  G +    GYL+ + +I  K G + I DEV 
Sbjct: 199 ELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVI 258

Query: 295 TGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK----IQF- 348
           TGFGR G+ +   +  GV PD++T AKG+ NG +P+GAV  + EI +   Q     I+F 
Sbjct: 259 TGFGRLGAPF-AAQYFGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFF 317

Query: 349 --NTFGGNPVCSAGGLAVLRVIDKE---RRQAHCADVGSHLLGRLRTLQERHDIIGDVRG 403
              T+ G+P+  A  LA L + ++E    R A  A      L  LR     H I  D+R 
Sbjct: 318 HGYTYSGHPLACAAALATLDLYEREGLLTRAARLAPYWEDALHSLRDA--PHVI--DIRN 373

Query: 404 RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDA 463
            GL+  +EL   R  K   +A     F K  E G+++      G++  + PP+   +   
Sbjct: 374 LGLVGAVEL-APRDGKPGKRAYEV--FLKCFEKGLMIRYT---GDILALSPPLIIEEAQI 427

Query: 464 DFLVDAL 470
           D L D L
Sbjct: 428 DELFDIL 434

Length = 442

>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional

 Score =  156 bits (396), Expect = 4e-43
 Identities = 114/405 (28%), Positives = 187/405 (46%), Gaps = 43/405 (10%)

Query: 83  VEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIAD 142
             GK  +L+D NG+RYLD   G      GHC+P ++ A+  Q++ L + +  + +  +A 
Sbjct: 23  THGKGSWLYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPSPAFYNEPMAK 82

Query: 143 FAEALASKMPGNLKVVYFVNSGTEANELAMLMAR-----LSTGNLGMIALRNAYHGGSSG 197
            A  L          V+F NSG EANE A+ +AR        G   +I   +++HG +  
Sbjct: 83  LAGLLTQH--SCFDKVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLA 140

Query: 198 TIGLTALNTWKYPI--PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGF 255
           T+  +    W   I  PQ                G   A    D+   ++   + K    
Sbjct: 141 TMSASGKPGWD-TIFAPQVP--------------GFPKAEL-NDI-ASVEKLITDKTVAV 183

Query: 256 IAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPD 315
           + E +QG GG +     +++ +  + ++ G + I DEVQTG GRTG+ +  +E  G+ PD
Sbjct: 184 MLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLF-AYELSGIEPD 242

Query: 316 IVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQA 375
           I+T+ KGIG G+PL A++   E+A V     Q  T+ GNP+ +A G+AV+  +       
Sbjct: 243 IMTLGKGIGGGVPLAALLAKAEVA-VFEAGDQGGTYNGNPLMTAVGVAVISQLLAPGFLE 301

Query: 376 HCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRE 435
                G +L  +L  L E   + G  RG GL+  + L  D   +         + EK R+
Sbjct: 302 GVRARGEYLKEKLLELSEERGLEG-ERGEGLLRALLLGKDIGPQ---------IVEKARD 351

Query: 436 L---GVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477
           +   G+L+       N+ R  P +  T ++ D ++  L   + KL
Sbjct: 352 MQPDGLLLNAP--RPNLLRFMPALNVTTEEIDQMIAMLRSVLDKL 394

Length = 395

>gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase

 Score =  152 bits (386), Expect = 7e-41
 Identities = 128/429 (29%), Positives = 204/429 (47%), Gaps = 58/429 (13%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL-------QHA 131
           PL I + +  Y++D NG++YLDA AG+   + G   P ++ A  EQ   L          
Sbjct: 72  PLVIEKSEGSYVYDINGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFWNRT 131

Query: 132 TTIYLHHAIADFAEAL-----ASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG--- 183
           T   L     D A+ L     A KM      V+F NSG+EAN+  + +       LG   
Sbjct: 132 TKPSL-----DLAKELLEMFTARKMGK----VFFTNSGSEANDTQVKLVWYYNNALGRPN 182

Query: 184 ---MIALRNAYHGG---SSGTIGLTALNTWKYPIPQGEIHHVVNPD--PYH--GSFGSD- 232
               IA   +YHG    S+   GL AL+  K+ +P   + H   P    +H  G    + 
Sbjct: 183 KKKFIARSKSYHGSTLISASLSGLPALHQ-KFDLPAPFVLHTDCPHYWRFHLPGETEEEF 241

Query: 233 AARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADE 292
           + R A +L++ I       +A FIAE + G GG +     Y + +  +++K   + IADE
Sbjct: 242 STRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADE 301

Query: 293 VQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFN-- 349
           V   FGR G+ + G +   + PD+V++AK + +  +P+GAV+ +PEI++V+    Q N  
Sbjct: 302 VICAFGRLGTMF-GCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHS--QSNKL 358

Query: 350 -------TFGGNPVCSAGGLAVLRVIDKERR-QAHCADVGSHLLGRLRTLQERHDIIGDV 401
                  T+ G+PV  A  L  L+ I KER    H   +       ++       IIG++
Sbjct: 359 GSFAHGFTYSGHPVSCAVALEALK-IYKERNIPEHVNKIAPRFQDGIKAFSGS-PIIGEI 416

Query: 402 RGRGLMVGMELVTDRKEKTPAKAETAV--LF-EKLRELGVLVGKGGLHGNVFRIKPPMCF 458
           RG GL++G E V ++    P  AE  V   F  + ++ G+LV    + G+   + PP+  
Sbjct: 417 RGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLV---RVAGDNIMMSPPLII 473

Query: 459 TKDDADFLV 467
           T ++ D L+
Sbjct: 474 TPEEVDELI 482

Length = 504

>gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate aminotransferase; Validated

 Score =  149 bits (379), Expect = 2e-40
 Identities = 121/429 (28%), Positives = 195/429 (45%), Gaps = 69/429 (16%)

Query: 70  PSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFE--QSKL 127
           P +F          + K  +L+DE+G+ Y+D FAG   ++ GH +P +  A+ +  Q   
Sbjct: 22  PVVFD---------KAKGSWLYDEDGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDG 72

Query: 128 LQH----ATTIYLHHAIADFAEALASK--MPGNL--KVVYFVNSGTEANELAMLMARLST 179
           + H     TT     A  +F E        P  L  KV +   +GT A E A+ +AR  T
Sbjct: 73  ITHGLDMHTT-----AKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKVT 127

Query: 180 GNLGMIALRNAYHGGSSGTIGLTALNTWK---YPIPQGEIHHVVNPDPYHGSFGSD---A 233
           G   ++A  N +HG + G++ +T  N+ K     +P   +  +    PY G FG D    
Sbjct: 128 GRTNIVAFTNGFHGMTLGSLAVTG-NSHKRQGAGVPLNNVTRM----PYDGYFGGDVDTL 182

Query: 234 ARYAQDLQDHIDFGTSG--KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD 291
           A   + L+D     +SG    A  I ET+QG GG    +  +L+ +  + RK   + I D
Sbjct: 183 AYLEKLLED----SSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVD 238

Query: 292 EVQTGFGRTGSHYWGFETQGVIPDIVTMAKGI-GNGLPLGAVVTTPEIANVMAQKIQFN- 349
           ++Q G GRTG+ ++ FE  G+ PDIVT++K I G GLP+  V+  PE+         +  
Sbjct: 239 DIQAGCGRTGT-FFSFERAGITPDIVTLSKSISGYGLPMALVLIKPELD-------VWKP 290

Query: 350 -----TF-GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERH-DIIGDVR 402
                TF G N        A+      +  +      G  +  RL  +  ++  +  +VR
Sbjct: 291 GEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRERLEEIAAKYPGLGAEVR 350

Query: 403 GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDD 462
           GRG+M G++      +   A    A  FE     G+++   G    V ++ PP+  T D+
Sbjct: 351 GRGMMQGIDF----GDGELAGKIAAEAFEN----GLIIETSGPEDEVVKLLPPL--TIDE 400

Query: 463 ADFLVDALD 471
            + L + LD
Sbjct: 401 EE-LEEGLD 408

Length = 425

>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional

 Score =  149 bits (378), Expect = 4e-40
 Identities = 114/373 (30%), Positives = 183/373 (49%), Gaps = 42/373 (11%)

Query: 77  QKPLN------IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH 130
           QK LN      +V G+  +L+D +G+RYLD  +G+   + G+   D+  A   Q + L +
Sbjct: 29  QKALNAEGPRVMVRGEGLHLWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPY 88

Query: 131 ATTIY--LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG----- 183
               +   H A+ + +E L S +PG+     + NSG+EANE+ +   R     LG     
Sbjct: 89  YNMFFHTTHPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKK 148

Query: 184 -MIALRNAYHGGSSGTIGLTALNTWKYPIPQG----EIHHVVNPDPY-HGSFGSDAA--- 234
            MI   N YHG    T+  TAL   K+    G    ++ H+  P  Y +G   + A    
Sbjct: 149 IMIGRWNGYHGS---TLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGR 205

Query: 235 RYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQ 294
           R A  L++ I    +  VAGF+AE  QG GG +     Y   +  I R+   +  ADEV 
Sbjct: 206 RAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVI 265

Query: 295 TGFGRTGS----HYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK---- 345
            GFGRTG      ++GFE     PD +++AKG+ +G +P+G +V +  IA  + ++    
Sbjct: 266 GGFGRTGEWFAHEHFGFE-----PDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVF 320

Query: 346 IQFNTFGGNPVCSAGGLAVLRVIDKER--RQAHCADVGSHLLGRLRTLQERHDIIGDVRG 403
               T+ G+PV +A  +A L+ +  E    +    D G +L   LR +   H ++G+V+G
Sbjct: 321 AHGLTYSGHPVAAAVAIANLKALRDEGVVTRVK-DDTGPYLQRCLREVFGDHPLVGEVQG 379

Query: 404 RGLMVGMELVTDR 416
            GL+  ++   D+
Sbjct: 380 AGLVAALQFAEDK 392

Length = 460

>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate aminotransferase

 Score =  147 bits (373), Expect = 1e-39
 Identities = 114/420 (27%), Positives = 189/420 (45%), Gaps = 40/420 (9%)

Query: 70  PSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFE--QSKL 127
           P++F          + K   L+DE+G+ Y+D FAG   ++ GH +P +  A+ +      
Sbjct: 18  PTVFE---------KAKGSTLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDG 68

Query: 128 LQHATTIYLHHAIADFAEALASKM--PGNL--KVVYFVNSGTEANELAMLMARLSTGNLG 183
           + H+  +    A  +F E     +  P  L  KV +   +GT A E A+ +AR  TG   
Sbjct: 69  IIHSLDMA-TEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKVTGRSN 127

Query: 184 MIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGS--DAARYAQDLQ 241
           +++  NA+HG + G++ +T           G     V+  PY G  G   D   Y    +
Sbjct: 128 VVSFTNAFHGMTLGSLSVTG--NRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAY---FE 182

Query: 242 DHIDFGTSG--KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGR 299
             ++  +SG    A  I ET+QG GG    +  +L+ +  + R+   + I D++Q G GR
Sbjct: 183 KLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGR 242

Query: 300 TGSHYWGFETQGVIPDIVTMAKGI-GNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCS 358
           TG  ++ FE  G+ PDIV ++K I G GLPL   +  PE+ +V        TF GN +  
Sbjct: 243 TG-TFFSFEPAGIEPDIVCLSKSISGYGLPLALTLIKPEL-DVWKPGEHNGTFRGNNLAF 300

Query: 359 AGGLAVLRVIDKERR-QAHCADVGSHLLGRLRTLQERH-DIIGDVRGRGLMVGMELVT-D 415
               A L     +   +         +  RL  +   + ++I  VRGRGLM G+E    D
Sbjct: 301 VTATAALEYYWSDDAFEKAVQRKSEIIQERLDRIVAEYPELIKQVRGRGLMQGIECGDGD 360

Query: 416 RKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMS 475
              K    A     FE     G+++   G +  V ++ PP+   ++     +D L+ ++ 
Sbjct: 361 LAGKIAKAA-----FEN----GLIIETSGPNDEVIKLLPPLTIDEETLQQGLDILEQAVE 411

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (SP|Q9Z3R2) or 1,3-diaminopropane (SP|P44951) biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance [Cellular processes, Adaptations to atypical conditions]. Length = 412

>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  148 bits (375), Expect = 2e-39
 Identities = 119/423 (28%), Positives = 188/423 (44%), Gaps = 53/423 (12%)

Query: 82  IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI-YLHHAI 140
           I  G+  +L D  G+RYLDA +       GH +P +   I +Q   L+H     + H  +
Sbjct: 33  IRRGEGVWLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAGFSHEPV 92

Query: 141 ADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRNAYHGG 194
            + +E L    P  L   ++ ++G+ A E+A+ M+     N G       + L N+YHG 
Sbjct: 93  IELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGE 152

Query: 195 SSGT--IGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYA--------QDLQDHI 244
           +     +G  AL T  Y     +   V +PD Y    G     ++        Q L +H 
Sbjct: 153 TLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHH 212

Query: 245 DFGTSGKVAGFIAET-IQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH 303
           D     ++A  I E  IQG GG     P YLKL+ +   + G   I DE+  GFGRTG+ 
Sbjct: 213 D-----EIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTM 267

Query: 304 YWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANV-------MAQKIQFNTFGGNP 355
           +   E  G+ PD + ++K +  G LPL AV+TT  +          +   +  +++ GNP
Sbjct: 268 F-ACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNP 326

Query: 356 VCSAGGLAVL------RVIDKERRQAHC-ADVGSHLLGRLRTLQERHDIIGDVRGRGLMV 408
           +  A  LA L       VI+  R  A   A+  +HL          H  + +VR  G+++
Sbjct: 327 LACAAALATLDIFEQDNVIENNRALARRMAEATAHL--------ADHPHVAEVRQTGMIL 378

Query: 409 GMELVTDRKEKTP---AKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADF 465
            +E+V D+  KTP    +     +++   E G L+      G+V    PP   T +  DF
Sbjct: 379 AIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRP---LGSVVYFLPPYVITPEQIDF 435

Query: 466 LVD 468
           L +
Sbjct: 436 LAE 438

Length = 466

>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional

 Score =  140 bits (355), Expect = 7e-37
 Identities = 125/425 (29%), Positives = 186/425 (43%), Gaps = 55/425 (12%)

Query: 89  YLFDEN-GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA------TTIYLHHAIA 141
           YL D   GRRYLD F    + + G  HP + +    +++L + A      + +Y    +A
Sbjct: 37  YLVDARTGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDVYTVE-MA 95

Query: 142 DFAEALAS-KMPGNLKVVYFVNSGTEANELAMLMA-------RLSTG---NLG--MIALR 188
            F +  A       L  ++FV+ G  A E A+ +A         + G    LG  ++ LR
Sbjct: 96  RFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLR 155

Query: 189 NAYHGGSSGTIGLTALNT--------WKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDL 240
            A+HG S  T+ LT  NT         K+  P+ +   +  P P       +A       
Sbjct: 156 GAFHGRSGYTLSLT--NTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALA 213

Query: 241 QDHIDFGTSG-KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGR 299
           Q    F      +A FIAE IQG GG     P +   + ++  +   + I DEVQTG G 
Sbjct: 214 QARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGL 273

Query: 300 TGSHYWGFETQGVIPDIVTMAK-----GIGNGLPLGAVVTTPEIANVMAQKIQFN-TFGG 353
           TG+  W ++  GV PDIV   K     GI  G  +  V       NV A   + N T+GG
Sbjct: 274 TGT-AWAYQQLGVRPDIVAFGKKTQVCGIMAGRRVDEVED-----NVFAVSSRINSTWGG 327

Query: 354 NPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERH-DIIGDVRGRGLMVGMEL 412
           N V       +L VI+++    + A  G +LL RL  L      ++ +VRGRGLM   +L
Sbjct: 328 NLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMCAFDL 387

Query: 413 VTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDY 472
                   P  A+   +  +L E GVLV   G     FR  P +  T ++ D  +DAL  
Sbjct: 388 --------PTTADRDEVIRRLWEEGVLVLPCGERSIRFR--PALTVTTEEIDAAIDALRR 437

Query: 473 SMSKL 477
           ++ ++
Sbjct: 438 ALPEV 442

Length = 443

>gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  138 bits (349), Expect = 5e-36
 Identities = 116/420 (27%), Positives = 180/420 (42%), Gaps = 43/420 (10%)

Query: 82  IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIA 141
           I  G+  +L   +GRRYLDA +   T   GH  P +  AI  Q+  L+        H  A
Sbjct: 50  IARGEGAWLVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLAGFTHEPA 109

Query: 142 -DFAE---ALASKMPGN--LKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRN 189
              AE   A+A +  G   L  V++ ++G+   E+A+ MA     N G       IAL N
Sbjct: 110 VQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALEN 169

Query: 190 AYHGGSSGTIGLTALNTWK--YPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQD---HI 244
            YHG + G + +  +  ++  Y     E     +PD Y    G  A  YA    D    +
Sbjct: 170 GYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQAL 229

Query: 245 DFGTSGKVAGFIAET-IQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH 303
              + G++   I E  +Q  GG     P YL+   ++    G   IADE+ TGFGRTG+ 
Sbjct: 230 FEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTL 289

Query: 304 YWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK------IQFNTFGGNPV 356
           +   E  GV+PD++ ++KG+  G LPL AV+ T ++ +           +  +++ GNP+
Sbjct: 290 F-ACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPL 348

Query: 357 CSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDR 416
             A  LA L +   +   A      +  + +L      H  + DVR  G++V  EL    
Sbjct: 349 ACAAALATLDIFADDDVIARNQPTAAR-MTQLAAQIGEHPHVADVRQAGMVVAFELTRGG 407

Query: 417 KEKTPAKAETAVLFEKLRELGVLVGKGGLH--------GNVFRIKPPMCFTKDDADFLVD 468
            ++TP        F     +G+   +  L         G+V    PP C  +     L D
Sbjct: 408 NKRTP--------FPPAARVGLHAYRAALARGVVLRPLGDVLYWMPPYCVDEAQLALLAD 459

Length = 472

>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

 Score =  133 bits (336), Expect = 3e-34
 Identities = 123/417 (29%), Positives = 177/417 (42%), Gaps = 41/417 (9%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH 138
           P+ I  GK  YL D +G  Y+D   G   +  GH HP V+ A+ EQ   L+   +     
Sbjct: 36  PIFIERGKGAYLTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQ---LERGLSFGAPT 92

Query: 139 AIA-DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGS-- 195
            +  + AE L  ++P +++ V FVNSGTEA   A+ +AR  TG   +I     YHG S  
Sbjct: 93  ELEVELAELLIERVP-SIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDS 151

Query: 196 ---SGTIGLTALNTWKYP-IPQGEIHHVVNPDPYHGSFG-SDAARYAQDLQDHIDFGTSG 250
                  G   L +   P +P     H +        +   +A   A   +++ D     
Sbjct: 152 LLVKAGSGAATLGSPSSPGVPADVAKHTL-----VLPYNDLEALEEA--FEEYGD----- 199

Query: 251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ET 309
            +A  I E + G  G V   PG+L+ + ++  + G + I DEV TGF R      G    
Sbjct: 200 DIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGF-R--VALGGAQGY 256

Query: 310 QGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMA--QKI-QFNTFGGNPVCSAGGLAVLR 366
            GV PD+ T+ K IG GLP+GA     EI   +A    + Q  T  GNP+  A GLA L 
Sbjct: 257 YGVEPDLTTLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLE 316

Query: 367 VIDKERRQ-AHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM----ELVTDRKE-KT 420
            +  E         +G  L   LR   ERH I   V   G M G+    E V +  + K 
Sbjct: 317 ELMTEEGVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKR 376

Query: 421 PAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477
                 A  F  L   GV +           +      T++D D  ++A D +  +L
Sbjct: 377 SDVERFAKFFHHLLNRGVYLAPSQFEAGF--LSTAH--TEEDIDRTLEAADEAFKEL 429

Length = 432

>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase

 Score =  132 bits (333), Expect = 6e-34
 Identities = 120/417 (28%), Positives = 182/417 (43%), Gaps = 51/417 (12%)

Query: 89  YLFDEN-GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA------TTIYLHHAIA 141
            L D   GRRYLD F+   +++ G  HP +++ +  +++L   A      + +Y    +A
Sbjct: 30  VLVDARDGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSNSDVYTVA-MA 88

Query: 142 DFAEALAS-KMPGNLKVVYFVNSGTEANELAMLMA----------RLSTGNLG--MIALR 188
            F +  A       L  ++F+  G  A E A+  A          R     LG  ++ LR
Sbjct: 89  RFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLR 148

Query: 189 NAYHGGSSGTIGLT---ALNTWKYPI---PQGEIHHVVNPDPYHGSFGSDAARYAQDLQD 242
            A+HG S  T+ LT      T ++P    P+ +   +  P          A       Q 
Sbjct: 149 QAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQA 208

Query: 243 HIDFGTSG-KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTG 301
              F      +A FIAE IQG GG     P +L+ +  +  +   + I DEVQTG G TG
Sbjct: 209 RAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTG 268

Query: 302 SHYWGFETQGVIPDIVTMAK-----GIGNGLPLGAVVTTPEIANVMAQKIQFN-TFGGNP 355
           +  W ++  GV PDIV   K     GI  G  +  V       NV A   + N T+GGN 
Sbjct: 269 T-AWAYQQLGVQPDIVAFGKKTQVCGIMAGRRVDEVAD-----NVFAVPSRLNSTWGGNL 322

Query: 356 VCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERH-DIIGDVRGRGLMVGMELVT 414
           V       +L +I++ER   +    G+HLL RL  L      ++ + RGRGLM   +L  
Sbjct: 323 VDMVRATRILEIIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDL-- 380

Query: 415 DRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALD 471
                 P+ A+   +  +L   GVL+   G     FR  PP+  T+++ D  +DA+ 
Sbjct: 381 ------PSTADRDEVIRQLYREGVLLLGCGERSIRFR--PPLTVTREEIDAAIDAIR 429

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431

>gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  125 bits (316), Expect = 2e-31
 Identities = 114/411 (27%), Positives = 180/411 (43%), Gaps = 30/411 (7%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH 138
            L +  G+  +L+D +GRRYLDA +       GH +P +  A+ +Q   L+HA      H
Sbjct: 37  LLPVARGEGAWLYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAGCTH 96

Query: 139 AIA-DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGM------IALRNAY 191
             A + AE LA+   G L   +F + G  A E+A+ M+  +  N G       + L N Y
Sbjct: 97  EPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGY 156

Query: 192 HGGSSGTIGLTALNTWK--YPIPQGEIHHVVNPDPYHGSFGSDAA----RYAQDLQDHID 245
           HG + G +G+T +  +K  Y       H V +PD      G  AA    R   D++    
Sbjct: 157 HGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFA 216

Query: 246 FGTSGKVAGFIAET-IQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHY 304
              +GK+A  I E  +Q   G     P YL+ +  +  + G   IADE+  G GRTG+ +
Sbjct: 217 -ERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGT-F 274

Query: 305 WGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK------IQFNTFGGNPVC 357
           +  E  GV PD + ++KGI  G LPL  V++   I             +  +++ GNP+ 
Sbjct: 275 FACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLA 334

Query: 358 SAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRK 417
               LA L +  ++   A  A   + L   L  L   H  +  +R RG +   ++  D  
Sbjct: 335 CRAALATLDLFAEDDVLARNARKSARLRAALAPLAA-HPQVRHLRQRGTIFAFDVALD-- 391

Query: 418 EKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVD 468
               A+  +   FE   E  +L+      G    + PP     D+  +L +
Sbjct: 392 -GDAARTFSRRFFEAALERELLLRP---IGTTVYLMPPYVLDDDEIAWLAE 438

Length = 453

>gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase

 Score =  121 bits (306), Expect = 3e-30
 Identities = 107/373 (28%), Positives = 159/373 (42%), Gaps = 40/373 (10%)

Query: 78  KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSK--LLQHATTIY 135
            P  +  GK  YL+D +G  Y+D       +  GH HP V+ A+ E  +      A T  
Sbjct: 30  TPFFVARGKGAYLYDVDGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERGTSYGAPT-- 87

Query: 136 LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG-- 193
              A    A+ + S++P  +++V FVNSGTEA   A+ +AR  TG   +I     YHG  
Sbjct: 88  --EAEILLAKEIISRVPS-VEMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHH 144

Query: 194 ----GSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS 249
                 +G+   T        +P  +   +    PY+            +  + +     
Sbjct: 145 DALLVKAGSGAATLGLPTSPGVP-EDFAKLTLVLPYNDL----------EALEEVFEEYG 193

Query: 250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGF--GRTGSHYWGF 307
            ++AG I E + G  G V   P +L  +  +  + G + I DEV TGF     G+     
Sbjct: 194 EEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQ---- 249

Query: 308 ETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGLAV 364
           E  GV PD+ T+ K IG GLP+GA     EI   +A +    Q  T  GNP+  A GLA 
Sbjct: 250 EYFGVEPDLTTLGKIIGGGLPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLAT 309

Query: 365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM----ELVTDRKEKT 420
           L+++D+E       ++   L   L  + E   I   V   G M  +    E VT+  +  
Sbjct: 310 LKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYAD-- 367

Query: 421 PAKAETAVLFEKL 433
            AK     LF K 
Sbjct: 368 -AKKSDTELFAKF 379

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 423

>gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional

 Score =  118 bits (298), Expect = 4e-29
 Identities = 107/339 (31%), Positives = 157/339 (46%), Gaps = 47/339 (13%)

Query: 79  PLNIVEGKMQYLFDENGRRYLD---AFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY 135
           P+ +  GK  Y +D +G +Y+D   A+  I+T   GH HP +  AI E ++       +Y
Sbjct: 36  PVVMERGKGAYFYDVDGNKYIDYLAAYGPIIT---GHAHPHITKAITEAAE----NGVLY 88

Query: 136 ---LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYH 192
                  I +FA+ L   +P +L+ V FVNSGTEA    + +AR  TG   +I     YH
Sbjct: 89  GTPTELEI-EFAKMLKEAIP-SLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYH 146

Query: 193 GGS------SGTIGLTALNTWKYP----IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQD 242
           G S      +G+ G + L T   P    +P+     V+   P+     +D     + L  
Sbjct: 147 GHSDLVLVAAGS-GPSTLGT---PDSAGVPKSIAQEVITV-PF-----NDIEALKEALDK 196

Query: 243 HIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS 302
             D     +VA  + E I G  G VE  PG+L+ V ++  +AG + I DEV T F R   
Sbjct: 197 WGD-----EVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RF-- 248

Query: 303 HYWGFET-QGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMA---QKIQFNTFGGNPVCS 358
            Y G +   GV PD+  + K IG GLP+GA     +I   +A      Q  T  GNP   
Sbjct: 249 MYGGAQDLLGVEPDLTALGKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASM 308

Query: 359 AGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDI 397
           A G+A L V+ +E        +G+ L   +    E+H I
Sbjct: 309 AAGIACLEVLQQEGVYEKLDRLGAMLEEGILEAAEKHGI 347

Length = 428

>gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  114 bits (287), Expect = 1e-27
 Identities = 102/377 (27%), Positives = 162/377 (42%), Gaps = 40/377 (10%)

Query: 89  YLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIA-DFAEAL 147
           +L  E+G   +DA +   + + GH HP +  A  +Q   + H     L H  A      L
Sbjct: 33  FLTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKL 92

Query: 148 ASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRNAYHGGSSGTI-- 199
            +     L  V++ +SG+ + E+A+ MA   +   G      ++  R+ YHG +   +  
Sbjct: 93  LNLTDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSV 152

Query: 200 -----GLTALNTWKYPIPQGEIHHVVNPDP-YHGSFGSDAARYAQDLQDHIDFGTSGKVA 253
                G+ +L  WK  +P+     +  P P   GS   + + Y + L+  ID      VA
Sbjct: 153 CDPEGGMHSL--WKGTLPE----QIFAPAPPVRGSSPQEISEYLRSLELLID----ETVA 202

Query: 254 GFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV 312
             I E I QG GG        ++ V  +  K   + IADE+ TGFGRTG  +      GV
Sbjct: 203 AIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELF-ATLAAGV 261

Query: 313 IPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK------IQFNTFGGNPVCSAGGLAVL 365
            PDI+ + K +  G +   A + T ++A +++        +   TF  NP+  A   A L
Sbjct: 262 TPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASL 321

Query: 366 RVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLM--VGMELVTDRKEKTPAK 423
            +I+    +     + + L+  L  L      + DVR  G +  V ME   D +E T A 
Sbjct: 322 EIIETGMWRKQVKRIEAELIAGLSPLA-HLPGVADVRVLGAIGVVEMEQPVDMEEATQAA 380

Query: 424 AETAVLFEKLRELGVLV 440
            +  V    LR  G LV
Sbjct: 381 VDHGVW---LRPFGRLV 394

Length = 422

>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase, eukaryotic type

 Score =  111 bits (278), Expect = 2e-26
 Identities = 110/441 (24%), Positives = 188/441 (42%), Gaps = 68/441 (15%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH 138
             +  + +  YL D +G R LD ++ I ++  G+ +P +L A   QS   + ATT+    
Sbjct: 41  LADYEKSRGNYLVDVDGNRLLDLYSQISSIPIGYNNPALLKAA--QSP--EMATTLINRP 96

Query: 139 AI-----ADFAEALASKM----PGNLKVVYFVNSGTEANELA------------------ 171
           A+      D+A+ L   +    P     V+   SG++ANELA                  
Sbjct: 97  ALGNFPSKDWAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQAD 156

Query: 172 ---------MLMARLSTGNLGMIALRNAYHGGSSGTIGLT------ALNTWKYPIPQGEI 216
                    M      + +L +++ + A+HG   G++  T       L+   +  PQ   
Sbjct: 157 FSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPF 216

Query: 217 HHVVNP-DPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLK 275
             +  P + +      +  R  ++++D I       VA  I E IQ  GG    +P + +
Sbjct: 217 PSLKYPLEEHVKENAKEEQRCLEEVEDLIK-KWHKPVAAIIVEPIQSEGGDNHASPDFFR 275

Query: 276 LVYDIVRKAGGVCIADEVQTGFGRTGS----HYWGFETQGVIPDIVTMAKGIGNGLPLGA 331
            + DI +K     I DEVQTG G TG      +W  +     PD+VT +K        G 
Sbjct: 276 KLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDP---PDMVTFSKKFQTA---GY 329

Query: 332 VVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTL 391
               P        + QFNT+ G+P  +     +++ I ++    + A VG +L   L  L
Sbjct: 330 FFHDPAFRPNKPYR-QFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGLEDL 388

Query: 392 QERH-DIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVF 450
           Q+++ + I ++RG+G   G  +  D    TP +A+   L +K R  GV +G  G+     
Sbjct: 389 QKKYPEFIQNLRGKGR--GTFIAWD----TPDEAKRDKLLKKARNNGVNIGGCGVKA--I 440

Query: 451 RIKPPMCFTKDDADFLVDALD 471
           R++P + F K  AD  ++ + 
Sbjct: 441 RLRPMLVFQKHHADIFLEIIS 461

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known eukaryotic examples of the enzyme. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so separate models are built for prokaryotic and eukaryotic sets. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 464

>gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase; Provisional

 Score =  108 bits (272), Expect = 1e-25
 Identities = 108/399 (27%), Positives = 165/399 (41%), Gaps = 80/399 (20%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAG-----IVTVSCGHCHPDVLNAIFEQSKLLQHATT 133
           P  I   K  YL+D +G  Y+D + G     I     GH HP+V+ A+ E     +   +
Sbjct: 33  PRFIERAKGAYLYDVDGNEYID-YVGSWGPMI----LGHAHPEVVEAVIEA---AEKGLS 84

Query: 134 IYLHHAI-ADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYH 192
                 +  + AE +   +P ++++V  VNSGTEA   A+ +AR  TG   +I     YH
Sbjct: 85  FGAPTELEVELAELVIELVP-SIEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYH 143

Query: 193 G---------GSSGTIGLTALNTWKYP----IPQGEIHH--VVNPDPYHGSFGSDAARYA 237
           G         GS    G     T   P    +P+    H       PY     +D     
Sbjct: 144 GHADSLLVKAGS----GAA---TLGLPDSPGVPEDFAKHTLTA---PY-----NDLEAVE 188

Query: 238 QDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGF 297
           +  +++       ++A  I E + G  G V   PG+L+ + ++  + G + I DEV TGF
Sbjct: 189 ELFEEY-----GDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF 243

Query: 298 GRTG-----SHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKI------ 346
            R        +Y      GV PD+ T+ K IG GLP+GA     EI   M +++      
Sbjct: 244 -RVALGGAQGYY------GVTPDLTTLGKIIGGGLPVGAFGGRREI---M-EQLAPLGPV 292

Query: 347 -QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG 405
            Q  T  GNP+  A GLA L+++ +         +   L   L+   ++  I   V   G
Sbjct: 293 YQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAAKKAGIPLTVNRVG 352

Query: 406 LMVGMELVTDRKEKTPAKAET------AVLFEKLRELGV 438
            M G+   TD      A A+       A  F  + + GV
Sbjct: 353 SMFGL-FFTDEPVTNYADAKKSDTERFARFFHAMLDEGV 390

Length = 426

>gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 96.8 bits (241), Expect = 9e-22
 Identities = 109/420 (25%), Positives = 175/420 (41%), Gaps = 57/420 (13%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI---- 134
           P+   +G M  L  ++GRR +D  +       G+ HP +  A   Q   L   + I    
Sbjct: 29  PVERADGVMITL--KDGRRLIDGMSSWWAALHGYNHPRLNAAATNQ---LAKMSHIMFGG 83

Query: 135 YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMA------RLSTGNLGMIALR 188
           + H    + A+ L   +P +L  ++F +SG+ A E+AM MA      +          +R
Sbjct: 84  FTHEPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIR 143

Query: 189 NAYHGGS----------SGTIGLTALN-TWKYPIPQGEIHHVVNPDPYHGSFGSDAARYA 237
           + YHG +          +G  GL   +   +Y +PQ  I        +   +  +A    
Sbjct: 144 SGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSI-------KFGEEWNDEAIEPL 196

Query: 238 QDLQDHIDFGTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG 296
           QDL +        ++A  I E + QG GG    +P YL    ++  + G + I DE+ TG
Sbjct: 197 QDLLEQ----KGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATG 252

Query: 297 FGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK-----IQFNT 350
           FGRTG  +   E  GV+PDI+ + K +  G L L A +TT  IA  +        +   T
Sbjct: 253 FGRTGKLF-ALEHAGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPT 311

Query: 351 FGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM 410
           F  NP+  A     +R++ +   Q +   + + L   L    E  D + +VR  G +  +
Sbjct: 312 FMANPLACAIAAESIRLLLESPWQQNIQRIEAQLKQELAPAAEF-DSVAEVRVLGAIGVV 370

Query: 411 ELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDAL 470
           E+      K P     A L  +  E G+ V      G +  I PP   + D+   L   L
Sbjct: 371 EM------KEP--VNMATLQPRFVEHGIWVRP---FGKLVYIMPPFIISPDELSQLTSGL 419

Length = 429

>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

 Score = 92.4 bits (230), Expect = 3e-20
 Identities = 96/341 (28%), Positives = 149/341 (43%), Gaps = 43/341 (12%)

Query: 89  YLFDENGRRYLDAFAGIVTVSCGHCHPDVLN-AIFEQSKLLQHATTIYLHHAIA-DFAEA 146
            L   +GRR +D  +       G+ HP  LN A+  Q   + H     + H  A +    
Sbjct: 36  ELILADGRRLVDGMSSWWAAIHGYNHP-QLNAAMKSQIDAMSHVMFGGITHPPAIELCRK 94

Query: 147 LASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG-----MIALRNAYHGGSSGTIGL 201
           L +  P  L+ V+  +SG+ A E+AM MA       G      + LR+ YHG + G + +
Sbjct: 95  LVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSV 154

Query: 202 TALNTWKYPIPQGEIH---------HVVNPDPYHGSFG----SDAARYAQDLQDHIDFGT 248
                     P   +H         ++  P P     G     D A +A+ +  H     
Sbjct: 155 CD--------PDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAH----- 201

Query: 249 SGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF 307
             ++A  I E I QG GG     P +LK V  +  + G + IADE+ TGFGRTG   +  
Sbjct: 202 RHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGK-LFAC 260

Query: 308 ETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSAGG 361
           E  G+ PDI+ + K +  G + L A +TT E+A  ++       +   TF GNP+  A  
Sbjct: 261 EHAGIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVA 320

Query: 362 LAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR 402
            A L +++    Q   A + + L   L  L++   ++ DVR
Sbjct: 321 NASLSLLESGDWQQQVAAIEAQLREELAPLRD-APMVADVR 360

Length = 428

>gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase

 Score = 85.6 bits (212), Expect = 7e-18
 Identities = 83/306 (27%), Positives = 130/306 (42%), Gaps = 53/306 (17%)

Query: 86  KMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIAD-FA 144
           K  Y +D +G  Y+D          GH   +VL A+ E    ++  T+      + +  A
Sbjct: 89  KGSYAWDVDGNEYIDYVGSWGPAIIGHADDEVLAALAET---MKKGTSFGAPCLLENVLA 145

Query: 145 EALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG--------GSS 196
           E +   +P ++++V FVNSGTEA    + +AR  TG   +I     YHG          S
Sbjct: 146 EMVIDAVP-SVEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGS 204

Query: 197 G--TIGLTALNTWKYPIPQGEIHHVVNPD----PYHGSFGSDAARYAQDLQ--DHIDFGT 248
           G  T+GL                    PD    P   +  +  A Y  DL+    +    
Sbjct: 205 GVATLGL--------------------PDSPGVPKAATSATLTAPY-NDLEAVKKLFEAN 243

Query: 249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRT---GSHYW 305
            G++A  I E + G  G +     +L+ + +I ++ G + + DEV TGF         Y+
Sbjct: 244 KGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAYGGAQEYF 303

Query: 306 GFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGL 362
           G     + PD+ T+ K IG GLP+GA     EI  ++A      Q  T  GNP+    G+
Sbjct: 304 G-----ITPDLTTLGKVIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGI 358

Query: 363 AVLRVI 368
             L+ +
Sbjct: 359 HTLKRL 364

Length = 474

>gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase; Provisional

 Score = 81.0 bits (200), Expect = 2e-16
 Identities = 83/286 (29%), Positives = 117/286 (40%), Gaps = 34/286 (11%)

Query: 92  DENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL--HHAIADFAEALAS 149
           D  G+ ++D      ++  GH HP + +AI    +  +  T+  L     I  FAE L S
Sbjct: 49  DSLGKTFIDFCGSWGSLIHGHSHPKICDAI---QQGAERGTSYGLTSEQEIL-FAEELFS 104

Query: 150 KMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY 209
            +      + FV+SGTEA   A+ +AR  TG   +I     YHG +   +          
Sbjct: 105 YLGLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQ-------GI 157

Query: 210 PIPQGEIH---HVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGA 266
              +  +    H+V+ D  H    S      Q  Q  +      +VAG I E I    G 
Sbjct: 158 SFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQ-TVMNSLGHRVAGVIFEPICANMGV 216

Query: 267 VELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQG------VIPDIVTMA 320
           V   PG+++ +    R+ G + I DEV TGF R           G      V PDI    
Sbjct: 217 VLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQ-------GGAAAIYHVKPDITVYG 268

Query: 321 KGIGNGLPLGAVVTTPEIANVMA---QKIQFNTFGGNPVCSAGGLA 363
           K +G GLP  AVV    I + +A      Q  T  GNP+  A G A
Sbjct: 269 KILGGGLPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKA 314

Length = 433

>gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase; Provisional

 Score = 73.9 bits (182), Expect = 4e-14
 Identities = 70/269 (26%), Positives = 112/269 (41%), Gaps = 44/269 (16%)

Query: 77  QKPLN----IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKL---LQ 129
           Q P      I  G   +++D +G  Y++   G+  V  GH +P V+ A+ E  +      
Sbjct: 25  QYPELAPGFIQRGSGAHVWDVDGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDGCNFT 84

Query: 130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRN 189
             + I L     D AE+    + G   +V F  +G++A   A+ +AR  TG   ++A R 
Sbjct: 85  RPSAIEL-----DAAESFLELIDG-ADMVKFCKNGSDATSAAVRLARAYTGR-DLVA-RC 136

Query: 190 AYHGGSSGT---IGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF 246
           A H   S     IG T ++     IP   +  +     Y     +D A      +DH   
Sbjct: 137 ADHPFFSTDDWFIGTTPMSA---GIPA-SVSALTVTFRY-----NDIASLEALFEDH--- 184

Query: 247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGF---GRTGSH 303
              G++A  I E       A E   G+L  V  +  + G + I DE+ TGF    R    
Sbjct: 185 --PGRIACVILEP----ATADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHMRGAQK 238

Query: 304 YWGFETQGVIPDIVTMAKGIGNGLPLGAV 332
            +     G++PD+    K +GNG  + A+
Sbjct: 239 LY-----GIVPDLSCFGKALGNGFAVSAL 262

Length = 431

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 41/197 (20%), Positives = 64/197 (32%), Gaps = 31/197 (15%)

Query: 140 IADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTI 199
           + +  E LA  +        FV SGT ANE A L+A L  G   +I   N +        
Sbjct: 2   LEELEEKLARLLQPGNDKAVFVPSGTGANEAA-LLALLGPG-DEVIVDANGHG----SRY 55

Query: 200 GLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAET 259
            + A       +   +   V   D  +            D+    +      VA  +   
Sbjct: 56  WVAAE------LAGAKPVPVPVDDAGY---------GGLDVAILEELKAKPNVALIVITP 100

Query: 260 IQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTM 319
               GG V +     K +  I ++ G + + D    G           E      D+VT 
Sbjct: 101 NTTSGG-VLVPL---KEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGG---ADVVTF 153

Query: 320 A--KGIGNGLPLGAVVT 334
           +  K +G G   G V+ 
Sbjct: 154 SLHKNLG-GEGGGVVIV 169

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate transaminase

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 58/259 (22%), Positives = 90/259 (34%), Gaps = 73/259 (28%)

Query: 158 VYFVNSGTEANELAMLMA-----------------RLSTGN--LGMIALRNAYHGGSSGT 198
           V+F ++G+ A E+A+ MA                 +       L ++AL  +YHG + G 
Sbjct: 430 VFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGA 489

Query: 199 IGLTA-------LNT---------------------WKYPIPQGEIHHVVNPDPYHGSFG 230
           +   A       L                       W   +P+G    +   +    S  
Sbjct: 490 MEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRD 549

Query: 231 ----------SDAARYAQDLQDHID----FGTSGKVAGFIAE-TIQGVGGAVELAPGYLK 275
                       A  Y   ++  +D       +G +A  I E  + G GG + + P + +
Sbjct: 550 EVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQR 609

Query: 276 LVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGL-PLGAVVT 334
            +  + R      I DEV TG  R G     +E  G  PDI   AK +  GL PL A + 
Sbjct: 610 ALVQVCRSRKIPVIFDEVFTGLWRLG-VESAWELLGCKPDIACYAKLLTGGLVPLAATLA 668

Query: 335 TPEIANVMAQKIQFNTFGG 353
           T E+         F  F G
Sbjct: 669 TEEV---------FEAFRG 678

Length = 817

>gnl|CDD|235917 PRK07046, PRK07046, aminotransferase; Validated

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 78/344 (22%), Positives = 118/344 (34%), Gaps = 60/344 (17%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH 138
           PL + E +     D +G RY D   G      GH    V  A+ EQ++  +  TT+    
Sbjct: 58  PLFVAEARGARFTDVDGHRYDDFCLGDTGAMFGHSPAPVARALAEQAR--RGLTTMLPSE 115

Query: 139 AIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGT 198
             A   E LA +    L       + T+AN   +  AR  TG   ++     YH    GT
Sbjct: 116 DAAWVGEELARRF--GLPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYH----GT 169

Query: 199 IGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDH---IDFG-------- 247
           +    ++     +  G     V      G           DL      ++F         
Sbjct: 170 VDDVFVD-----LVDGR---PVQRPGLLGQ--------VHDLTATTRVVEFNDLAALEAA 213

Query: 248 -TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT------GFGRT 300
              G VA  +AE      G V   PG+ + + ++ R+ G + + DE  T      G+ R 
Sbjct: 214 LADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYTRA 273

Query: 301 GSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQF---------NTF 351
                G E     PD + + K I  G+P      + E+A                   T 
Sbjct: 274 ----HGLE-----PDFLVVGKPIAGGVPCAVYGFSAELAERAQAAKASAPPGHSGIGTTL 324

Query: 352 GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERH 395
             N +  A   A L  +  E   AH   + + L   LR +  RH
Sbjct: 325 SANALAMAAMRATLAEVMTEAAYAHMLALAARLAAGLRAVIARH 368

Length = 453

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 61/391 (15%), Positives = 118/391 (30%), Gaps = 101/391 (25%)

Query: 123 EQSKLLQHATTIYLH-HAIADFAEALASKMPGNLKV-------VYFVNSGTEANELAMLM 174
           E+  L      +Y     + +  EALA  +  +  +       V F +      E  + +
Sbjct: 25  EKDALAGGTRNLYGPTDGLPELREALAKFLGRSPVLKLDREAAVVFGSGAGANIEALIFL 84

Query: 175 ARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAA 234
            RL+ G+                                     ++ P P + S+     
Sbjct: 85  LRLNPGDA------------------------------------ILVPAPTYPSYIRIFR 108

Query: 235 -------RYAQDLQD--HIDF--------GTSGKVAGFIAETIQGVGGAVELAPGYLKLV 277
                  RY     +  H+DF          +      +  +     G V      L+ +
Sbjct: 109 LAGGEVVRYPLYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTV-ATLEELEKL 167

Query: 278 YDIVRKAGGVCIADEVQTGFGRTGSHYWG--FETQGVIPDIV--TMAKGIG-NGLPLGAV 332
            D+ ++   + + DE   GF                    +V  + +K  G  G  +G +
Sbjct: 168 LDLAKEHNILLLVDEAYAGFVFGSLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYI 227

Query: 333 VTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQ 392
           +    + + + +  +          +    A    +           V S L    + ++
Sbjct: 228 LGNAAVISQLRKLARPFYS-----STHLQAAAAAALSDP------LLVASELEEMRQRIK 276

Query: 393 ERHDIIGD-VRGRGLMV-----GMELVTD-RKEKTPAKAETAVLFEKLR-ELGVLVGKGG 444
           ER D + D +   GL V     G  L+T    E   A      L + L  E+GV V    
Sbjct: 277 ERRDYLRDGLEAAGLSVLPSQAGFFLLTGLDPEAALA------LAQVLLEEVGVYV---- 326

Query: 445 LHGNVFRIKP-----PMCFTKDDADFLVDAL 470
             G+ F             T+++ + L++A+
Sbjct: 327 TPGSSFGGPGWLRITVAGGTEEELEELLEAI 357

Length = 357

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	477
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	100.0
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	100.0
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	100.0
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	100.0
PRK07678	451	aminotransferase; Validated	100.0
PRK05965	459	hypothetical protein; Provisional	100.0
PRK07482	461	hypothetical protein; Provisional	100.0
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	100.0
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
PRK06062	451	hypothetical protein; Provisional	100.0
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	100.0
PRK07481	449	hypothetical protein; Provisional	100.0
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
PRK07483	443	hypothetical protein; Provisional	100.0
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	100.0
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	100.0
PRK06148	1013	hypothetical protein; Provisional	100.0
PRK07480	456	putative aminotransferase; Validated	100.0
PRK07036	466	hypothetical protein; Provisional	100.0
PRK06105	460	aminotransferase; Provisional	100.0
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	100.0
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	100.0
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	100.0
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	100.0
PLN02760	504	4-aminobutyrate:pyruvate transaminase	100.0
PRK06917	447	hypothetical protein; Provisional	100.0
PRK06541	460	hypothetical protein; Provisional	100.0
PRK12403	460	putative aminotransferase; Provisional	100.0
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	100.0
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	100.0
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	100.0
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	100.0
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	100.0
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	100.0
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	100.0
PRK06149	972	hypothetical protein; Provisional	100.0
PRK09792	421	4-aminobutyrate transaminase; Provisional	100.0
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	100.0
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	100.0
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	100.0
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	100.0
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	100.0
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	100.0
PRK04612	408	argD acetylornithine transaminase protein; Provisi	100.0
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	100.0
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	100.0
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PLN00144	382	acetylornithine transaminase	100.0
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	100.0
PRK07046	453	aminotransferase; Validated	100.0
PRK08297	443	L-lysine aminotransferase; Provisional	100.0
PRK03715	395	argD acetylornithine transaminase protein; Provisi	100.0
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	100.0
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	100.0
PLN02624	474	ornithine-delta-aminotransferase	100.0
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	100.0
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	100.0
PRK08088	425	4-aminobutyrate aminotransferase; Validated	100.0
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	100.0
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	100.0
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	100.0
PRK01278	389	argD acetylornithine transaminase protein; Provisi	100.0
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	100.0
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	100.0
PRK03244	398	argD acetylornithine aminotransferase; Provisional	100.0
PRK02936	377	argD acetylornithine aminotransferase; Provisional	100.0
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	100.0
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	100.0
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	100.0
PRK02627	396	acetylornithine aminotransferase; Provisional	100.0
PTZ00125	400	ornithine aminotransferase-like protein; Provision	100.0
PRK04260	375	acetylornithine aminotransferase; Provisional	100.0
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	100.0
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	100.0
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	100.0
PRK07505	402	hypothetical protein; Provisional	100.0
PLN02822	481	serine palmitoyltransferase	100.0
PRK13393	406	5-aminolevulinate synthase; Provisional	100.0
PRK09064	407	5-aminolevulinate synthase; Validated	100.0
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	100.0
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	100.0
PRK07179	407	hypothetical protein; Provisional	100.0
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	100.0
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.98
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.98
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.97
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.97
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.97
PRK13392	410	5-aminolevulinate synthase; Provisional	99.97
PLN02955	476	8-amino-7-oxononanoate synthase	99.97
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.96
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.96
PRK06225	380	aspartate aminotransferase; Provisional	99.96
PRK07682	378	hypothetical protein; Validated	99.95
PRK06207	405	aspartate aminotransferase; Provisional	99.95
PLN00175	413	aminotransferase family protein; Provisional	99.95
PRK06108	382	aspartate aminotransferase; Provisional	99.95
PRK07324	373	transaminase; Validated	99.95
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.95
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.95
PRK07681	399	aspartate aminotransferase; Provisional	99.95
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.95
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.95
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.95
PLN02483	489	serine palmitoyltransferase	99.95
PRK08636	403	aspartate aminotransferase; Provisional	99.95
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.95
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.95
PRK08960	387	hypothetical protein; Provisional	99.95
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.94
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.94
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.94
PRK09148	405	aminotransferase; Validated	99.94
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.94
PRK05764	393	aspartate aminotransferase; Provisional	99.94
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.94
PRK06290	410	aspartate aminotransferase; Provisional	99.94
PRK08068	389	transaminase; Reviewed	99.94
PRK08361	391	aspartate aminotransferase; Provisional	99.94
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.94
PRK12414	384	putative aminotransferase; Provisional	99.94
PRK06348	384	aspartate aminotransferase; Provisional	99.94
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.94
PTZ00433	412	tyrosine aminotransferase; Provisional	99.94
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.94
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.94
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.94
PLN02187	462	rooty/superroot1	99.94
PRK05942	394	aspartate aminotransferase; Provisional	99.94
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.94
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.94
PRK06107	402	aspartate aminotransferase; Provisional	99.94
PRK05957	389	aspartate aminotransferase; Provisional	99.94
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.94
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.94
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.94
PRK09082	386	methionine aminotransferase; Validated	99.94
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.94
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.93
PRK08912	387	hypothetical protein; Provisional	99.93
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.93
PRK05839	374	hypothetical protein; Provisional	99.93
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.93
PLN02656	409	tyrosine transaminase	99.93
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.93
PRK07777	387	aminotransferase; Validated	99.93
PRK08363	398	alanine aminotransferase; Validated	99.93
PRK07550	386	hypothetical protein; Provisional	99.93
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.93
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.93
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.93
PRK07683	387	aminotransferase A; Validated	99.93
PRK08175	395	aminotransferase; Validated	99.93
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.93
PRK07568	397	aspartate aminotransferase; Provisional	99.93
PRK06855	433	aminotransferase; Validated	99.93
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.93
PRK09105	370	putative aminotransferase; Provisional	99.93
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.93
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.92
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.92
PRK07337	388	aminotransferase; Validated	99.92
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.92
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.92
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.92
PTZ00377	481	alanine aminotransferase; Provisional	99.92
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.92
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.92
PRK03321	352	putative aminotransferase; Provisional	99.92
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.92
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.92
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.92
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.92
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.92
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.92
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.91
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.91
PRK09265	404	aminotransferase AlaT; Validated	99.91
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.91
PLN02721	353	threonine aldolase	99.91
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.91
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.91
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	99.91
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.91
PLN02672	1082	methionine S-methyltransferase	99.91
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.91
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.91
PRK06836	394	aspartate aminotransferase; Provisional	99.91
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	99.91
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.9
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.9
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.9
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.9
PRK08354	311	putative aminotransferase; Provisional	99.9
PRK07908	349	hypothetical protein; Provisional	99.9
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.9
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.9
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.9
PLN02231	534	alanine transaminase	99.9
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.9
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.89
PTZ00376	404	aspartate aminotransferase; Provisional	99.89
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.89
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.89
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.89
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.89
PRK02948	381	cysteine desulfurase; Provisional	99.89
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.88
PRK09275	527	aspartate aminotransferase; Provisional	99.88
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.88
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.88
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.88
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.88
PRK08637	388	hypothetical protein; Provisional	99.88
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.87
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.87
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.87
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.87
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.87
PRK10534	333	L-threonine aldolase; Provisional	99.87
PLN02409	401	serine--glyoxylate aminotransaminase	99.87
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.86
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.86
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.86
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.86
PLN02397	423	aspartate transaminase	99.85
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.85
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.85
PLN02651	364	cysteine desulfurase	99.85
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.84
PLN02368	407	alanine transaminase	99.84
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.83
PRK14012	404	cysteine desulfurase; Provisional	99.82
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.82
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	99.82
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.81
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.8
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.79
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.79
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.79
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.79
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.78
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.78
PLN02242	418	methionine gamma-lyase	99.78
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.77
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.76
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.76
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.75
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.75
PRK07049	427	methionine gamma-lyase; Validated	99.74
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.74
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.74
PRK06767	386	methionine gamma-lyase; Provisional	99.74
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.73
PRK06460	376	hypothetical protein; Provisional	99.71
PRK07582	366	cystathionine gamma-lyase; Validated	99.71
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.71
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.71
PRK08249	398	cystathionine gamma-synthase; Provisional	99.7
PRK06234	400	methionine gamma-lyase; Provisional	99.7
PRK08045	386	cystathionine gamma-synthase; Provisional	99.7
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.7
PRK07050	394	cystathionine beta-lyase; Provisional	99.7
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.69
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.69
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.69
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.69
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.69
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.69
PRK03080	378	phosphoserine aminotransferase; Provisional	99.68
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.68
PRK05968	389	hypothetical protein; Provisional	99.68
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.67
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.67
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	99.67
PRK07503	403	methionine gamma-lyase; Provisional	99.66
PRK02769	380	histidine decarboxylase; Provisional	99.66
PRK08776	405	cystathionine gamma-synthase; Provisional	99.66
PRK08861	388	cystathionine gamma-synthase; Provisional	99.66
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.65
PRK07811	388	cystathionine gamma-synthase; Provisional	99.65
PRK08574	385	cystathionine gamma-synthase; Provisional	99.65
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.64
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.64
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.64
PRK09028	394	cystathionine beta-lyase; Provisional	99.64
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.64
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.63
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.63
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.63
PLN03032	374	serine decarboxylase; Provisional	99.63
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.62
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.61
PLN02724	805	Molybdenum cofactor sulfurase	99.61
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.61
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.61
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.59
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.59
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.59
PRK05967	395	cystathionine beta-lyase; Provisional	99.59
PRK08064	390	cystathionine beta-lyase; Provisional	99.58
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.58
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.58
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.58
PRK05939	397	hypothetical protein; Provisional	99.57
PLN02509	464	cystathionine beta-lyase	99.55
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.55
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.55
PRK07671	377	cystathionine beta-lyase; Provisional	99.55
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.55
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.53
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.53
PRK08114	395	cystathionine beta-lyase; Provisional	99.52
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.52
PRK05367	954	glycine dehydrogenase; Provisional	99.52
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.52
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.52
PLN02880	490	tyrosine decarboxylase	99.51
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.5
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.5
PRK04311	464	selenocysteine synthase; Provisional	99.49
PLN02590	539	probable tyrosine decarboxylase	99.47
PRK13237	460	tyrosine phenol-lyase; Provisional	99.47
PRK12566	954	glycine dehydrogenase; Provisional	99.47
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.45
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.45
PRK06434	384	cystathionine gamma-lyase; Validated	99.42
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.42
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.41
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.41
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.39
PLN02263	470	serine decarboxylase	99.39
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.38
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.38
PLN02452	365	phosphoserine transaminase	99.32
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.31
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	99.3
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.28
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.26
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.26
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.21
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	99.2
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.16
PLN02271	586	serine hydroxymethyltransferase	99.16
PRK12462	364	phosphoserine aminotransferase; Provisional	99.16
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	99.15
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.15
PRK05367	954	glycine dehydrogenase; Provisional	99.05
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.04
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.03
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	98.99
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	98.87
PRK15029	755	arginine decarboxylase; Provisional	98.86
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	98.82
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	98.77
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	98.75
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	98.64
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	98.63
PRK13578	720	ornithine decarboxylase; Provisional	98.54
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	98.52
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	98.5
PRK15399	713	lysine decarboxylase LdcC; Provisional	98.49
KOG0629	510	consensus Glutamate decarboxylase and related prot	98.48
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	98.46
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	98.45
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	98.42
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	98.42
PRK15400	714	lysine decarboxylase CadA; Provisional	98.38
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	98.25
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	98.16
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	98.12
PRK12566	954	glycine dehydrogenase; Provisional	98.05
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	98.03
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	97.93
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	97.77
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	97.59
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	97.46
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	97.41
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	96.98
COG4100	416	Cystathionine beta-lyase family protein involved i	96.29
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	96.15
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	91.9
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	90.89

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-93  Score=670.58  Aligned_cols=422  Identities=65%  Similarity=1.076  Sum_probs=402.9

Q ss_pred             CCCCCCCCCHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhh
Q 011777           48 DPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKL  127 (477)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~  127 (477)
                      .|+++++|..++.+.++++++++.+..++..|++|++|+|+||+|++|++|||+++|++++++|||||+|++++.+|+.+
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~ls~~~~~~~~~Pl~Iv~~~~~ylyDe~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~   81 (442)
T KOG1404|consen    2 MPPPYTGPSTDQVLQKRRAFLSPGLTSYYKKPLVIVRGEGQYLYDEEGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKK   81 (442)
T ss_pred             CCCccCCcchhhHHHHhhhcCCcceeccccCCceEEecceEEEEcCCCceeehhhCCeEEEEcCCCChHHHHHHHHhhhh
Confidence            45678899999999999999999988889999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCC
Q 011777          128 LQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTW  207 (477)
Q Consensus       128 ~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~  207 (477)
                      +.|.++.|.+++..+|+++|.+++|.+++.++|+||||||||+||++||.|+++.+||+++++|||.+..++++++.+.|
T Consensus        82 l~H~t~~~~~~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~  161 (442)
T KOG1404|consen   82 LYHTTSGYLNPPIHDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPW  161 (442)
T ss_pred             hEEeeccccCCcHHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC--CCeeeecCCCCcCCCCCCC-----HHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHH
Q 011777          208 KYPIPQ--GEIHHVVNPDPYHGSFGSD-----AARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDI  280 (477)
Q Consensus       208 ~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l  280 (477)
                      +.+++.  +++.+.+.|+++|.+|+++     ...+.+++++.+....++.+|++|+|||||.||++.++++||++++++
T Consensus       162 k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~  241 (442)
T KOG1404|consen  162 KQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKV  241 (442)
T ss_pred             cccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHH
Confidence            998876  4999999999999999876     456788999999877788899999999999999999999999999999


Q ss_pred             HHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccc-cccCCCCcHHHHH
Q 011777          281 VRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKI-QFNTFGGNPVCSA  359 (477)
Q Consensus       281 ~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~-~~~t~~~~~~~~a  359 (477)
                      |+++|+++|.|||||||||+| ++|+++..++.|||+|++|++|+|+|+|++++++|+++.+.+.. +++||++||++|+
T Consensus       242 v~k~Ggl~IaDEVqtGfGRtG-~~wgfe~h~v~PDIvTmAKgiGnG~Pl~AVvtt~EIa~v~~~~~~~fnTyggnP~a~a  320 (442)
T KOG1404|consen  242 VRKRGGLFIADEVQTGFGRTG-HMWGFESHGVVPDIVTMAKGIGNGFPLGAVVTTPEIADVLNQKSSHFNTYGGNPVACA  320 (442)
T ss_pred             HHHcCCEEEehhhhhcccccc-ccccccccCCCccHHHHHhhccCCCcceeeecCHHHHHHHHhccccccccCCCchhHH
Confidence            999999999999999999999 89999999999999999999999999999999999999998876 9999999999999


Q ss_pred             HHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCC-CCCCccHHHHHHHHHHHHHcCc
Q 011777          360 GGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDR-KEKTPAKAETAVLFEKLRELGV  438 (477)
Q Consensus       360 aa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~-~~~~~~~~~~~~~~~~l~~~Gv  438 (477)
                      +++++|+++++|+++++..+.+.+|+++|.++.+++++++++||+|+|+++|+++++ ..+.|.......+.+.++++|+
T Consensus       321 vg~aVL~Vikee~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gv  400 (442)
T KOG1404|consen  321 VGLAVLKVIKEENLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGV  400 (442)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCe
Confidence            999999999999999999999999999999999999999999999999999999988 5666777778889999999999


Q ss_pred             eeeccCCCCCEEEEeCCCCCcHHHHHHHHHHH
Q 011777          439 LVGKGGLHGNVFRIKPPMCFTKDDADFLVDAL  470 (477)
Q Consensus       439 ~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l  470 (477)
                      +++.++.+++++||.||+++|++||+.+++..
T Consensus       401 lvg~g~i~G~vfriaPPlciT~edi~f~~~~~  432 (442)
T KOG1404|consen  401 LVGKGGIHGNVFRIAPPLCITKEDIDFAVEYF  432 (442)
T ss_pred             eeecccccceEEEecCCeeccHHHHHHHHHHH
Confidence            99999999999999999999999998888855

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=100.00  E-value=4.6e-91  Score=689.21  Aligned_cols=422  Identities=41%  Similarity=0.617  Sum_probs=387.9

Q ss_pred             CCCCCHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccc
Q 011777           52 YTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA  131 (477)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~  131 (477)
                      .++++..++++++.++++.+.... ..|+.+++++|+||||+|||+||||.+|+++.++||+||+|++|+++|++++.|.
T Consensus        13 ~~~~~~~~~~~r~~~~~~r~~~~~-~~p~~~~ra~G~~l~DvdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~   91 (447)
T COG0160          13 APGPKALELIERREEALARSYGRF-RFPLVIVRAEGAYLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHT   91 (447)
T ss_pred             CCCcchHHHHHHHHHHhccccccc-cCcceEEecccCEEEeCCCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhcc
Confidence            567788899999999888775542 5689999999999999999999999999999999999999999999999999887


Q ss_pred             ccccCC-hHHHHHHHHHHhhCCC-CCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCC-
Q 011777          132 TTIYLH-HAIADFAEALASKMPG-NLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWK-  208 (477)
Q Consensus       132 ~~~~~~-~~~~~l~~~La~~~~~-~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~-  208 (477)
                      ...+.+ +...+++|+|.+.+|. ..++++|+|||+||||+|+|+||.+||+..||+|.++|||+|.+++++++....+ 
T Consensus        92 ~~~~~~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~  171 (447)
T COG0160          92 HTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYK  171 (447)
T ss_pred             cCCcccchhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccc
Confidence            777665 8899999999999998 6889999999999999999999999999999999999999999999999875433 


Q ss_pred             CCCC--CCCeeeecCCCCcCCCCCCCH----HHHHHHHHHHHh--ccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHH
Q 011777          209 YPIP--QGEIHHVVNPDPYHGSFGSDA----ARYAQDLQDHID--FGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDI  280 (477)
Q Consensus       209 ~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~le~~i~--~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l  280 (477)
                      ..+.  ..++.++|+|++||+++..++    ..+.+.+++.+.  ...+.++|+||+||+||+||.++||++||++|+++
T Consensus       172 ~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~  251 (447)
T COG0160         172 AGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKL  251 (447)
T ss_pred             cCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHH
Confidence            2222  256999999999999987543    224555777554  23567899999999999999999999999999999


Q ss_pred             HHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHH
Q 011777          281 VRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAG  360 (477)
Q Consensus       281 ~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aa  360 (477)
                      |+|||+++|+||||+|||||| ++|+++++|+.|||+|+||++|+|+|+|++++++++++ .....+.+||++||++|+|
T Consensus       252 ~~~~gillI~DEVQtG~GRTG-~~fa~E~~gv~PDivt~aK~ig~G~Pl~avv~r~ei~~-~~~g~~~~Tf~GNpva~Aa  329 (447)
T COG0160         252 CREHGILLIADEVQTGFGRTG-KMFAFEHFGVEPDIVTLAKSLGGGLPLSAVVGRAEIMD-WPPGGHGGTFGGNPVACAA  329 (447)
T ss_pred             HHHcCCEEEEeccccCCCccc-cchhhhhcCCCCCEEEecccccCCCceeEEeccHHhcc-cCCcccCCCCCcCHHHHHH
Confidence            999999999999999999999 89999999999999999999999999999999999999 6677899999999999999


Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCcee
Q 011777          361 GLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLV  440 (477)
Q Consensus       361 a~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v  440 (477)
                      ++++|++++++++.+++.+++++++++|.++.++|+.+++|||.|+|+++++++++.+++|+......+.+.++++|+++
T Consensus       330 a~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil  409 (447)
T COG0160         330 ALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLL  409 (447)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcCceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEE
Confidence            99999999999999999999999999999999999999999999999999999998889999999999999999999999


Q ss_pred             eccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          441 GKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       441 ~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ..+|.++|+|||.||+++|++++|+++++|++++.+
T Consensus       410 ~~~G~~~nviRi~PPL~is~e~~d~~l~il~~al~~  445 (447)
T COG0160         410 LTCGPHGNVLRILPPLTISDEELDEGLDILEEALKE  445 (447)
T ss_pred             eccCCCCcEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence            999989999999999999999999999999999875

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.6e-89  Score=656.57  Aligned_cols=389  Identities=38%  Similarity=0.636  Sum_probs=358.7

Q ss_pred             CHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccccc
Q 011777           56 SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY  135 (477)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~  135 (477)
                      .+....+...+++.+.   |.+.|+.+++|+|+||||.+||+||||.+|+++++|||+||++++|+++|++++.|.+..|
T Consensus         5 ~~~~~~~~~~~~~~~~---Y~~~~~~~~~G~G~~v~D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~~   81 (404)
T COG4992           5 LTAATIELFMKYLMPT---YGRLPVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLF   81 (404)
T ss_pred             cHHHHHHHHHHhhhcc---cCcCceeEEeccccEEECCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhccccc
Confidence            3456667677776543   3456799999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccC---CceEEEEccCccCCcccccccccCCCCCCCCC
Q 011777          136 LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTG---NLGMIALRNAYHGGSSGTIGLTALNTWKYPIP  212 (477)
Q Consensus       136 ~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~---~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  212 (477)
                      .++...+|+++|++..| ..++|||+|||+||||+|+|+||.+++   +.+||.|.++|||+|.+++++++++.|+..+.
T Consensus        82 ~~~~~~~la~~L~~~s~-~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~  160 (404)
T COG4992          82 YNEPQAELAEKLVELSP-FADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFG  160 (404)
T ss_pred             CChHHHHHHHHHHhhCc-cccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCC
Confidence            99999999999999998 689999999999999999999999997   78999999999999999999999987776553


Q ss_pred             C--CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEE
Q 011777          213 Q--GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA  290 (477)
Q Consensus       213 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  290 (477)
                      +  +++.++|        |++     +++++++|+    +++++||+|||||+||+++++++||+++++||++||++||+
T Consensus       161 Pl~~g~~~vp--------fnD-----i~al~~ai~----~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~  223 (404)
T COG4992         161 PLLPGFRHVP--------FND-----IEALEAAID----EDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLIL  223 (404)
T ss_pred             CCCCCceecC--------CCC-----HHHHHHHhc----cCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEE
Confidence            3  5777775        443     688999997    48999999999999999999999999999999999999999


Q ss_pred             cCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch
Q 011777          291 DEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK  370 (477)
Q Consensus       291 DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~  370 (477)
                      ||||||+|||| ++|+++++|+.|||+|++|++|||+|+|++++++++.+.+....|++||+|||++|+++.++|+++.+
T Consensus       224 DEVQtG~GRTG-k~fA~e~~gV~PDI~tlaK~LgGG~PigA~la~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~  302 (404)
T COG4992         224 DEVQTGLGRTG-KLFAYEHYGVEPDILTLAKALGGGFPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLE  302 (404)
T ss_pred             eccccCCCccc-hHHHHHHhCCCCCEEEeeccccCCccceeeEEchhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcc
Confidence            99999999999 89999999999999999999999999999999988888899999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEE
Q 011777          371 ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVF  450 (477)
Q Consensus       371 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~i  450 (477)
                      +++.+++++.+++++++|+++..+++.+..+||+|+|+++++..+.        .+..+.+.|.++||++.+.+  .+++
T Consensus       303 e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~GLmiGiel~~~~--------~a~~~~~~~~~~gvL~~~a~--~~Vi  372 (404)
T COG4992         303 EGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPY--------RARDIVRALREEGVLVLPAG--PNVI  372 (404)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcCCceeeeecceeEEEEEecCcc--------cHHHHHHHHHHCCeEEecCC--CCeE
Confidence            9999999999999999999999999999999999999999996531        35678999999999998866  6899


Q ss_pred             EEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          451 RIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       451 Ri~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ||.||+++++|||++++++|++++++
T Consensus       373 R~~PpL~i~~eei~~~~~~l~~~l~~  398 (404)
T COG4992         373 RFLPPLVITEEEIDEALDALERALAA  398 (404)
T ss_pred             EecCCccCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999874

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=100.00  E-value=2.7e-78  Score=594.03  Aligned_cols=410  Identities=35%  Similarity=0.533  Sum_probs=361.4

Q ss_pred             HHhhhcCCCccc--cc-cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-ccCCh
Q 011777           63 KRKQFLGPSIFH--YY-QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-IYLHH  138 (477)
Q Consensus        63 ~~~~~~~~~~~~--~~-~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~-~~~~~  138 (477)
                      ...++++.....  .+ ..|.++++|+|.||||.|||+|||..+|+|++++||+||+|.+|+++|++++.|... .+.++
T Consensus         8 ~d~~~~whP~t~~~~~~~~~~~i~~aeG~yl~d~~G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~~   87 (449)
T COG0161           8 ADLSHLWHPFTQMRDPLAEPRVIVRAEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTHE   87 (449)
T ss_pred             hhhhheeccccccccccccceeeeecceeEEEeCCCCEEEecccHHHHhhcCcCCHHHHHHHHHHHHhCCchhhcccCCc
Confidence            366676543221  11 228999999999999999999999999999999999999999999999999988744 45566


Q ss_pred             HHHHHHHHHHhhCC-CCCCEEEEeCChHHHHHHHHHHHHhcc------CCceEEEEccCccCCcccccccccCCCCC-CC
Q 011777          139 AIADFAEALASKMP-GNLKVVYFVNSGTEANELAMLMARLST------GNLGMIALRNAYHGGSSGTIGLTALNTWK-YP  210 (477)
Q Consensus       139 ~~~~l~~~La~~~~-~~~~~v~~~~sGseA~~~Al~~ar~~~------~~~~ii~~~~~yhG~~~~~~~~~~~~~~~-~~  210 (477)
                      +..+|+++|+++.| .++++|||++|||||||.|+|+|+.|.      +|.++|+..++|||.|.+++++++..... ..
T Consensus        88 Pa~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~  167 (449)
T COG0161          88 PAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAF  167 (449)
T ss_pred             hHHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhh
Confidence            79999999999999 559999999999999999999999873      46679999999999999999999844322 22


Q ss_pred             C--CCCCeeeecCCCCcCCCCCC-CHH---HHHHHHHHHHhccCCCCeeEEEecccCCC-CCeeeCCchhHHHHHHHHHH
Q 011777          211 I--PQGEIHHVVNPDPYHGSFGS-DAA---RYAQDLQDHIDFGTSGKVAGFIAETIQGV-GGAVELAPGYLKLVYDIVRK  283 (477)
Q Consensus       211 ~--~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~le~~i~~~~~~~~a~vi~epi~~~-~G~~~~~~~~l~~l~~l~~~  283 (477)
                      .  ...+..+++.|..|+.+... ...   +++++||++|...+++++||||+||+.+. ||+++||++||++++++|++
T Consensus       168 ~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~k  247 (449)
T COG0161         168 YDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDK  247 (449)
T ss_pred             ccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHH
Confidence            2  33678889999988877643 333   66889999999777799999999997777 99999999999999999999


Q ss_pred             hCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhccc-----ccccCCCCcHHH
Q 011777          284 AGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVC  357 (477)
Q Consensus       284 ~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~-----~~~~t~~~~~~~  357 (477)
                      |||+||+|||.||||||| ++|+++++|+.|||+|++|++++| +|+|++++++++.+.+...     .|+.||++||++
T Consensus       248 y~ILlI~DEV~tGFGRTG-~~FA~e~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~~~~f~HG~TYsghPla  326 (449)
T COG0161         248 YGILLIADEVATGFGRTG-KMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPLA  326 (449)
T ss_pred             cCcEEEeecceeCCCcCc-hhhhhhhcCCCCCeeeecccccccchhhHhHhhhHHHHHHHhcccCCeeccCCccccCHHH
Confidence            999999999999999999 899999999999999999999999 7999999999999988654     689999999999


Q ss_pred             HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHH-HHHHHHHHHHc
Q 011777          358 SAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAE-TAVLFEKLREL  436 (477)
Q Consensus       358 ~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~-~~~~~~~l~~~  436 (477)
                      |+||+++|++++++++++++++.+.+|.++|+++...++.++++|+.|++.+++++.+..++.|.... ...+...++++
T Consensus       327 cAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~  406 (449)
T COG0161         327 CAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALER  406 (449)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHHHC
Confidence            99999999999999999999999999999999976677999999999999999999988877766333 46788899999


Q ss_pred             CceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          437 GVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       437 Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      |++++|.   ++.+-++||+++|++|||++++++.+++++
T Consensus       407 Gl~iRp~---g~~i~~~PPliit~~eid~l~~~l~~al~~  443 (449)
T COG0161         407 GLLIRPL---GDVIYLMPPLIITREEIDELVDALREALDE  443 (449)
T ss_pred             CeEEeec---CCEEEEcCCccCCHHHHHHHHHHHHHHHHH
Confidence            9999987   578999999999999999999999999864

>PRK07678 aminotransferase; Validated

Probab=100.00  E-value=1.2e-76  Score=606.71  Aligned_cols=421  Identities=32%  Similarity=0.532  Sum_probs=362.3

Q ss_pred             CCHHHHHHHHhhhcCCCccccc-cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc
Q 011777           55 PSADQVFQKRKQFLGPSIFHYY-QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT  133 (477)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~  133 (477)
                      .++++++++.+++++.....+. ..|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+...
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~   84 (451)
T PRK07678          5 KQTDELLAKDEQYVWHGMKPYNPNATMVVAKAEGAWVTDIQGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSYFPL   84 (451)
T ss_pred             cCHHHHHHHhhcccCCCccccccCCCeeEEeeeeeEEEeCCCCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCcccc
Confidence            3567888877777654332222 248999999999999999999999999999999999999999999999998766554


Q ss_pred             ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhcc------CCceEEEEccCccCCcccccccccCCCC
Q 011777          134 IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLST------GNLGMIALRNAYHGGSSGTIGLTALNTW  207 (477)
Q Consensus       134 ~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~------~~~~ii~~~~~yhG~~~~~~~~~~~~~~  207 (477)
                      .+.++...+|+++|++.+|.. ++|+|+||||||||.|||+||.++      +|.+||.++++|||++.++++.++...+
T Consensus        85 ~~~~~~~~~lae~l~~~~~~~-~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~  163 (451)
T PRK07678         85 TQSHEPAIKLAEKLNEWLGGE-YVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQR  163 (451)
T ss_pred             ccCCHHHHHHHHHHHHhCCCC-CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCccc
Confidence            567888999999999998763 689999999999999999999986      5788999999999999999999876554


Q ss_pred             CCCCC--CCCeeeecCCCCcCCCCCCC----HHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHH
Q 011777          208 KYPIP--QGEIHHVVNPDPYHGSFGSD----AARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIV  281 (477)
Q Consensus       208 ~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~  281 (477)
                      +..+.  .+++.+++.|+.++.+++.+    ...+++.++++++..+++++|+||+||+|+++|+++|+++||++|+++|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc  243 (451)
T PRK07678        164 KYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEIC  243 (451)
T ss_pred             ccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHH
Confidence            43332  25788888888888776432    2334566788886444578999999999999999999999999999999


Q ss_pred             HHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcc------cccccCCCCc
Q 011777          282 RKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQ------KIQFNTFGGN  354 (477)
Q Consensus       282 ~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~------~~~~~t~~~~  354 (477)
                      ++||+++|+|||||||||+| ++|+++++|+.||++|+||+++|| +|+|++++++++++.+..      ..|++||++|
T Consensus       244 ~~~g~llI~DEV~tGfGRtG-~~~~~~~~gv~PDivt~gK~lggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gn  322 (451)
T PRK07678        244 QKHGALLISDEVICGFGRTG-KAFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGN  322 (451)
T ss_pred             HHcCCEEEEeehhhcCCcCc-hhHHHHhcCCCCCEEEeecccccCCcceeEEEEcHHHHHHHhccCcccccccCCCCCcC
Confidence            99999999999999999999 799999999999999999999999 799999999999998863      2488999999


Q ss_pred             HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCc-cHHHHHHHHHHH
Q 011777          355 PVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTP-AKAETAVLFEKL  433 (477)
Q Consensus       355 ~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~-~~~~~~~~~~~l  433 (477)
                      |++|++++++|++++++++++++++++++|+++|+++.++++.+.++||.|+|+++++..+...+.| +......+.+.|
T Consensus       323 p~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l  402 (451)
T PRK07678        323 PAACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAAC  402 (451)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHH
Confidence            9999999999999998999999999999999999988888999999999999999999865433333 334567889999


Q ss_pred             HHcCceeeccCC----CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          434 RELGVLVGKGGL----HGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       434 ~~~Gv~v~~~~~----~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      +++||++.+.+.    .++.+||+||+++|++|||+++++|++++.++
T Consensus       403 ~~~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~  450 (451)
T PRK07678        403 KEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERI  450 (451)
T ss_pred             HHCCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence            999999976432    24889999999999999999999999998764

>PRK05965 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-76  Score=607.08  Aligned_cols=416  Identities=31%  Similarity=0.506  Sum_probs=355.2

Q ss_pred             HHHHHHHHhhhcCCCcccc--c--cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccc
Q 011777           57 ADQVFQKRKQFLGPSIFHY--Y--QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT  132 (477)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~--~--~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~  132 (477)
                      +.++.++..++.+.....+  .  ..|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~   82 (459)
T PRK05965          3 SNSLIELDRAHLIHPVASYRGHEARGVTVLASAKGATLTDASGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYAT   82 (459)
T ss_pred             hHHHHHhhhhccccccccccccccCCCceEEeeeEeEEEECCCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCcc
Confidence            4456666555543322111  1  24789999999999999999999999999999999999999999999999876644


Q ss_pred             c--ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccC
Q 011777          133 T--IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTAL  204 (477)
Q Consensus       133 ~--~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~  204 (477)
                      .  .+.++...+|+++|++.+|.+.++|+|++|||||||.|||+||.|      ++|.+||+++++|||++.+++++++.
T Consensus        83 ~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~  162 (459)
T PRK05965         83 GYFHFGSEPAIRLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTAL  162 (459)
T ss_pred             cccccCCHHHHHHHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCC
Confidence            3  356788899999999999877889999999999999999999998      45889999999999999998888876


Q ss_pred             CCCCCCCC--CCCeeeecCCCCcCCCCCCCH----HHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHH
Q 011777          205 NTWKYPIP--QGEIHHVVNPDPYHGSFGSDA----ARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVY  278 (477)
Q Consensus       205 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~  278 (477)
                      +.++....  ..++.+++.|++++++++++.    ..++++++++++...++++++||+||+|+++|+++|+++||++|+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr  242 (459)
T PRK05965        163 PAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMR  242 (459)
T ss_pred             chhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHH
Confidence            54443322  245567777888887776553    235677888887544478999999999999999999999999999


Q ss_pred             HHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcc-------cccccC
Q 011777          279 DIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQ-------KIQFNT  350 (477)
Q Consensus       279 ~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~-------~~~~~t  350 (477)
                      ++|++||++||+|||||||||+| ++|+++++|+.|||+|+||+++|| +|+|++++++++++.+..       ..|++|
T Consensus       243 ~lc~~~gillI~DEV~tGfGRtG-~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T  321 (459)
T PRK05965        243 EACRELGILFVADEVITGFGRTG-PLFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYT  321 (459)
T ss_pred             HHHHHcCCEEEEechhccCccCc-hhhhHhhcCCCCCeEEechhhccCCcceeEEEEcHHHHHHHhccccccccccccCC
Confidence            99999999999999999999999 799999999999999999999999 599999999999988753       258899


Q ss_pred             CCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCc---cHHHHH
Q 011777          351 FGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTP---AKAETA  427 (477)
Q Consensus       351 ~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~---~~~~~~  427 (477)
                      |++||++|++++++|++++++++.+++++++++|+++|+++. +++.+.++||.|+|+++++..+...+.+   ......
T Consensus       322 ~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~-~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~  400 (459)
T PRK05965        322 YSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGLDALR-AHPLVGDVRGRGLLGALELVADKATKTPFDAALDPAD  400 (459)
T ss_pred             CCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc-cCCCEEEEeecceEEEEEEeccccccCCCCchhHHHH
Confidence            999999999999999999999999999999999999999985 5899999999999999999865433333   122456


Q ss_pred             HHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          428 VLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       428 ~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .+.+.++++||++.+.+  .+++|+.||+++|++||++++++|++++++
T Consensus       401 ~i~~~~~~~Gll~~~~g--~~~i~~~PpL~it~~ei~~~~~~l~~~l~~  447 (459)
T PRK05965        401 RIFDRAYANGLVFRAFG--DGVLGFAPALCCTEGEFDLIFERTRKTLDD  447 (459)
T ss_pred             HHHHHHHhCCeEEEecC--CcEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence            78899999999998754  578999999999999999999999999865

>PRK07482 hypothetical protein; Provisional

Probab=100.00  E-value=4e-76  Score=603.75  Aligned_cols=420  Identities=29%  Similarity=0.449  Sum_probs=357.2

Q ss_pred             CCHHHHHHHHhhhcCCCcc---ccc---cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhc
Q 011777           55 PSADQVFQKRKQFLGPSIF---HYY---QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL  128 (477)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~---~~~---~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~  128 (477)
                      .+++++.++.+++++....   .+.   ..|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~   82 (461)
T PRK07482          3 QKIDELLAWDRDHFFHPSTHLGDHARGELPGRIVEGGEGIRITDAQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKEL   82 (461)
T ss_pred             ccHHHHHHhhhhhccCCcccccccccccCCCeeEEeeeeeEEEECCCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhc
Confidence            3567788877666543321   111   2379999999999999999999999999999999999999999999999997


Q ss_pred             ccccc--ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccc
Q 011777          129 QHATT--IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIG  200 (477)
Q Consensus       129 ~~~~~--~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~  200 (477)
                      .+...  .+.++...+|+++|++..|.+.++|+|+||||||+|+|||+||.+      ++|.+||+++++|||++.++++
T Consensus        83 ~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s  162 (461)
T PRK07482         83 AYYHTYVGHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGS  162 (461)
T ss_pred             CccccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhh
Confidence            64432  466888999999999999877899999999999999999999976      3588999999999999999999


Q ss_pred             cccCCCCCCCCC--CCCeeeecCCCCcCCCC-CCCH----HHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchh
Q 011777          201 LTALNTWKYPIP--QGEIHHVVNPDPYHGSF-GSDA----ARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGY  273 (477)
Q Consensus       201 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~----~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~  273 (477)
                      +++.+.++..+.  ..++.+++.|+.+++++ +...    ..+++++++++....++++|+||+||+||++|+++++++|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~y  242 (461)
T PRK07482        163 LTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGY  242 (461)
T ss_pred             ccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHH
Confidence            987665544332  25677777777766543 2111    2256778888864445789999999999999999999999


Q ss_pred             HHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCcc-ceEEEEeCHHHHHhhcc-------c
Q 011777          274 LKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGL-PLGAVVTTPEIANVMAQ-------K  345 (477)
Q Consensus       274 l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~-pig~v~~~~~~~~~~~~-------~  345 (477)
                      |++|+++|++||+++|+|||||||||+| ++|+++++|+.||++|+||+++||+ |+|++++++++++.+..       .
T Consensus       243 l~~lr~lc~~~giLlI~DEV~tGfGRtG-~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~  321 (461)
T PRK07482        243 WPAIQAVLKKYDILLIADEVVTGFGRLG-SMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAI  321 (461)
T ss_pred             HHHHHHHHHHhCCEEEEeccccCCCcCc-chhhHHhcCCCCCEEEEccccccCccccceeeecHHHHHHHhcccccCCcc
Confidence            9999999999999999999999999999 7999999999999999999999995 99999999999987752       2


Q ss_pred             ccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccH--
Q 011777          346 IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAK--  423 (477)
Q Consensus       346 ~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~--  423 (477)
                      .|++||++||++|+|++++|++++++++++++++++++|+++|+++..+++.+.++||.|+|++++++.+...+.|..  
T Consensus       322 ~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~  401 (461)
T PRK07482        322 GHGWTYSGHPICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPA  401 (461)
T ss_pred             ccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChh
Confidence            488999999999999999999999999999999999999999999999999999999999999999986543333321  


Q ss_pred             -HHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          424 -AETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       424 -~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                       .....+...|+++||++.+.. .++++||.||+++|++||++++++|++++++
T Consensus       402 ~~~~~~i~~~~~~~Gvl~~~~~-~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~  454 (461)
T PRK07482        402 LKIGPQVSAAALERGVIARAMP-HGDILGFAPPLVLTRAEADEIVAIAKDAVDE  454 (461)
T ss_pred             hHHHHHHHHHHHHCCcEEecCC-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence             234678899999999986532 3589999999999999999999999999864

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=2.5e-75  Score=597.18  Aligned_cols=419  Identities=32%  Similarity=0.489  Sum_probs=357.3

Q ss_pred             CCCCCHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccc
Q 011777           52 YTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA  131 (477)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~  131 (477)
                      .+.|++.+++++..++++.....  ..|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+.
T Consensus        14 ~~~~~s~~~~~~~~~~~~~~~~~--~~p~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~   91 (443)
T PRK06058         14 IPGPKSQALAERRAAAVAAGVGS--TLPVYVARAGGGIVEDVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFTHT   91 (443)
T ss_pred             CCCccHHHHHHHHHHhhcccccc--CCCceEEeeeeeEEEeCCCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhccCc
Confidence            45677888888877777554322  3589999999999999999999999999999999999999999999999987554


Q ss_pred             cc-ccCChHHHHHHHHHHhhCCCC-CCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCC-CCC
Q 011777          132 TT-IYLHHAIADFAEALASKMPGN-LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALN-TWK  208 (477)
Q Consensus       132 ~~-~~~~~~~~~l~~~La~~~~~~-~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~  208 (477)
                      .. .+.++...+++++|++.+|.. .++++|++||+|||+.|+|+||.+++|++||+++++|||++.+++++++.. .++
T Consensus        92 ~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~  171 (443)
T PRK06058         92 CFMVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYK  171 (443)
T ss_pred             cccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccc
Confidence            33 246788899999999999854 369999999999999999999999999999999999999999999987642 233


Q ss_pred             CCCC--CCCeeeecCCCCcCCCCCC--CHHH----HHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHH
Q 011777          209 YPIP--QGEIHHVVNPDPYHGSFGS--DAAR----YAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDI  280 (477)
Q Consensus       209 ~~~~--~~~~~~~~~~~~~~~~~~~--~~~~----~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l  280 (477)
                      ..+.  .+++..++.|.+++.+...  +...    +.+.+++.+   .++++|+||+||+|+++|+++|+++||++|+++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~l  248 (443)
T PRK06058        172 SGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQV---GADNLAAVIIEPIQGEGGFIVPAEGFLPALLEW  248 (443)
T ss_pred             cccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhh---CCCceEEEEECCccCCCCCcCCCHHHHHHHHHH
Confidence            2221  2455666666666543211  1112    223333333   246899999999999999999999999999999


Q ss_pred             HHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHH
Q 011777          281 VRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAG  360 (477)
Q Consensus       281 ~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aa  360 (477)
                      |++||+++|+||||+||||+| .+|+++++|+.||++|+||+++||+|+|++++++++++.+....+++||++||++|+|
T Consensus       249 c~~~gillI~DEV~tGfgRtG-~~fa~~~~gv~PDiv~~gK~l~~G~Pi~av~~~~~i~~~~~~~~~~~T~~gnpl~~aa  327 (443)
T PRK06058        249 CRENGVVFIADEVQTGFARTG-AWFACEHEGIVPDLITTAKGIAGGLPLSAVTGRAEIMDAPHPGGLGGTYGGNPVACAA  327 (443)
T ss_pred             HHHcCCEEEEeccccCCCcCh-hhhHHHhcCCCCCEEEEcccccCCCccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHH
Confidence            999999999999999999999 7889999999999999999999999999999999999998877788999999999999


Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCcee
Q 011777          361 GLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLV  440 (477)
Q Consensus       361 a~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v  440 (477)
                      ++++|+.++++++.+++++++++++++|+++..+++.+.+++|.|+|+++++..+. .+.++......+.+.|+++||++
T Consensus       328 a~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~~Gv~~  406 (443)
T PRK06058        328 ALAAIETIEEDDLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPG-TTEPDAELTKALAAAAHAAGVIV  406 (443)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccceEEEEEEecCC-CCCCcHHHHHHHHHHHHHCCeEE
Confidence            99999999989999999999999999999998889999999999999999997653 23344455677889999999999


Q ss_pred             eccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          441 GKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       441 ~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      .+++.+++++||.||+++|++||++++++|+++++++
T Consensus       407 ~~~~~~~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~~  443 (443)
T PRK06058        407 LTCGTYGNVIRLLPPLVIGDELLREGLDVLEAALADL  443 (443)
T ss_pred             eccCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHhC
Confidence            8876667899999999999999999999999999764

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=2e-75  Score=597.77  Aligned_cols=417  Identities=29%  Similarity=0.464  Sum_probs=352.3

Q ss_pred             HHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-ccccccC
Q 011777           58 DQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-HATTIYL  136 (477)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-~~~~~~~  136 (477)
                      ++++++..++.+.........|+.+++|+|+||||.|||+||||.+|++++++||+||+|++|+++|+++.. +....+.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~  104 (464)
T PRK06938         25 SPLLERQSRRESNARSYPRRIPLALKRARGIYVEDVEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHTLDLT  104 (464)
T ss_pred             HHHHHHHHhhhhhccccccCCCceEEeccccEEEeCCCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhcccccccC
Confidence            467777655532211111245899999999999999999999999999999999999999999999997533 3222456


Q ss_pred             ChHHHHHHHHHHhhCCCCC---CEEEEe-CChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCC
Q 011777          137 HHAIADFAEALASKMPGNL---KVVYFV-NSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP  212 (477)
Q Consensus       137 ~~~~~~l~~~La~~~~~~~---~~v~~~-~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  212 (477)
                      ++...+|+++|.+.+|.++   ++++|+ ||||||++.|||+||.+++|.+||+++++|||++.+++++++...++..+.
T Consensus       105 ~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~  184 (464)
T PRK06938        105 TPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLG  184 (464)
T ss_pred             CHHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCC
Confidence            8889999999999988654   367665 899999999999999999999999999999999999999887544433222


Q ss_pred             --CCCeeeecCCCCcCCCCCCCHH----HHHHHHHHHHhcc--CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHh
Q 011777          213 --QGEIHHVVNPDPYHGSFGSDAA----RYAQDLQDHIDFG--TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKA  284 (477)
Q Consensus       213 --~~~~~~~~~~~~~~~~~~~~~~----~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~  284 (477)
                        .+++.+++.|+.++++++....    .+++.++++++..  +.+++|+||+||+|+++|+++|+++||++|+++|++|
T Consensus       185 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~  264 (464)
T PRK06938        185 ALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEA  264 (464)
T ss_pred             CCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc
Confidence              2467778888877777654322    2467788888632  2247999999999999999999999999999999999


Q ss_pred             CcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHH
Q 011777          285 GGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAV  364 (477)
Q Consensus       285 gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~  364 (477)
                      |+++|+|||||||||+| ++|+++++|+.|||+|+||+++||+|+|++++++++ +.+....|++||++||++|+|++++
T Consensus       265 giLlI~DEV~tGfGRtG-~~~a~e~~gv~PDiv~~gKglggG~PlsAv~~~~~~-~~~~~~~~~~T~~gnpla~Aaa~a~  342 (464)
T PRK06938        265 GIPLIVDEIQSGFGRTG-KMFAFEHAGIIPDVVVLSKAIGGSLPLAVVVYREWL-DTWQPGAHAGTFRGNQMAMAAGSAT  342 (464)
T ss_pred             CCEEEEeccccCCCcCc-HHHHHHhcCCCCCEEEeeccccCCCceEEEeehhHh-hccCCCCCCCCCCcCHHHHHHHHHH
Confidence            99999999999999999 899999999999999999999999999999999885 6665567889999999999999999


Q ss_pred             HHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCC-----Cc-cHHHHHHHHHHHHHcCc
Q 011777          365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEK-----TP-AKAETAVLFEKLRELGV  438 (477)
Q Consensus       365 l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~-----~~-~~~~~~~~~~~l~~~Gv  438 (477)
                      |++++++++++++++++++|+++|+++.++++.+.++||.|+|++++++.+...+     .+ .......+.+.|+++||
T Consensus       343 L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gl  422 (464)
T PRK06938        343 LRYIKEHRLAEHAAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGL  422 (464)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCCe
Confidence            9999999999999999999999999999899999999999999999997543221     12 22345678889999999


Q ss_pred             eeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          439 LVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       439 ~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ++.+++..++++||.||+++|++||++++++|++++.+
T Consensus       423 l~~~~g~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~  460 (464)
T PRK06938        423 ILELGGRHGSVVRFLPPLIITAEQIDEVAEIFAEAVAA  460 (464)
T ss_pred             EEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence            99876656799999999999999999999999999865

>PRK06062 hypothetical protein; Provisional

Probab=100.00  E-value=2.3e-75  Score=596.59  Aligned_cols=415  Identities=32%  Similarity=0.519  Sum_probs=355.8

Q ss_pred             HHHHHHHhhhcCCCcccc-ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccC
Q 011777           58 DQVFQKRKQFLGPSIFHY-YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL  136 (477)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~-~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~  136 (477)
                      ++.++...+++++..... ...|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+....+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~   93 (451)
T PRK06062         14 ARAYALDRAHVFHSWSAQGKINPMVIAGAEGSYVWDYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTVAPAHA   93 (451)
T ss_pred             HHHHHhhhhhccccccccccCCCceEEeceeeEEEECCCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCCcCCccC
Confidence            344555555544332221 2358999999999999999999999999999999999999999999999999877655677


Q ss_pred             ChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCC-CCC
Q 011777          137 HHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP-QGE  215 (477)
Q Consensus       137 ~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~-~~~  215 (477)
                      ++...+|+++|+++.|.+.++|+|++|||||++.|+|+||.+++|.+||+++++|||++.+++++++.+.++...+ .++
T Consensus        94 ~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~  173 (451)
T PRK06062         94 NDARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAG  173 (451)
T ss_pred             CHHHHHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCC
Confidence            8999999999999998778899999999999999999999999999999999999999999999987554332212 257


Q ss_pred             eeeecCCCCcCCCCC--CCH---HHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEE
Q 011777          216 IHHVVNPDPYHGSFG--SDA---ARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA  290 (477)
Q Consensus       216 ~~~~~~~~~~~~~~~--~~~---~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  290 (477)
                      +..++.|+++++++.  ++.   ..++++++++++...++++++||+||+++++|+++|+++||++|+++|++||++||+
T Consensus       174 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~  253 (451)
T PRK06062        174 VVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIA  253 (451)
T ss_pred             CEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEe
Confidence            777888888887763  221   234677888886443478999999999999999999999999999999999999999


Q ss_pred             cCcccCccCCCCCCccccccCCCcceeeecccccCcc-ceEEEEeCHHHHHhhccc--ccccCCCCcHHHHHHHHHHHHh
Q 011777          291 DEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGL-PLGAVVTTPEIANVMAQK--IQFNTFGGNPVCSAGGLAVLRV  367 (477)
Q Consensus       291 DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~-pig~v~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~a~l~~  367 (477)
                      ||||+||||+| .+|+++++|+.||++||||+++||+ |+|++++++++++.+...  .+++||++||++|++++++|++
T Consensus       254 DEV~tGfGRtG-~~~a~~~~gv~PDi~t~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~  332 (451)
T PRK06062        254 DEVMAGFGRTG-KWFAIEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAAAVATINA  332 (451)
T ss_pred             eccccCCCcCc-HHHHHHhcCCCCCeeeechhhhcCCcCcEEEEEcHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            99999999999 7999999999999999999999995 999999999999988643  4778999999999999999999


Q ss_pred             hchhhHHHHHHHHH-HHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCcc------HHHHHHHHHHHHHcCcee
Q 011777          368 IDKERRQAHCADVG-SHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA------KAETAVLFEKLRELGVLV  440 (477)
Q Consensus       368 l~~~~~~~~~~~~~-~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~------~~~~~~~~~~l~~~Gv~v  440 (477)
                      ++++++.+++++++ ++++++|+++..+++.+.+++|.|+|+++++..+...+.|.      ......+.+.|+++||++
T Consensus       333 l~~~~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~  412 (451)
T PRK06062        333 MEEEGIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLP  412 (451)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEE
Confidence            99889999999999 69999999999889999999999999999997543322221      123567889999999998


Q ss_pred             eccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          441 GKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       441 ~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .+.   ++.+||+||+++|++|||+++++|++++++
T Consensus       413 ~~~---~~~lrl~ppl~~t~~eid~~~~~l~~~l~~  445 (451)
T PRK06062        413 FVN---GNRIHVVPPCTVTEDEVREGLAILDAALAV  445 (451)
T ss_pred             eec---CCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence            753   578999999999999999999999999875

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=6.7e-75  Score=592.82  Aligned_cols=420  Identities=30%  Similarity=0.478  Sum_probs=360.2

Q ss_pred             CCCCCHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccc
Q 011777           52 YTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA  131 (477)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~  131 (477)
                      .++|++++++++..+++..... ....|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+.
T Consensus        10 ~~~~~s~~~~~~~~~~~~~~~~-~~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~~   88 (457)
T PRK05639         10 PPGPKAKELIEREKRVLSPGIG-VKLFPLVPKRGFGALIEDVDGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQHS   88 (457)
T ss_pred             CCCCCHHHHHHHHHHhhccccC-cCCCCceEEeeecCEEEeCCCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhcccc
Confidence            5677888898887777655431 123589999999999999999999999999999999999999999999999987654


Q ss_pred             ccc-cCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccC-CCCCC
Q 011777          132 TTI-YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTAL-NTWKY  209 (477)
Q Consensus       132 ~~~-~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~-~~~~~  209 (477)
                      ... +.++...+|+++|++.+|.+.++|+|+||||||||.|+|+||.+++|.+||.++++|||++.+++++++. ..++.
T Consensus        89 ~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~  168 (457)
T PRK05639         89 MIGYTHSERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKR  168 (457)
T ss_pred             ccCccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCccccc
Confidence            433 3467888999999999987678999999999999999999999999999999999999999999988764 22332


Q ss_pred             CCC--CCCeeeecCCCCcCCCCCC----CH----HHHHHHHHHHHhc--cCCCCeeEEEecccCCCCCeeeCCchhHHHH
Q 011777          210 PIP--QGEIHHVVNPDPYHGSFGS----DA----ARYAQDLQDHIDF--GTSGKVAGFIAETIQGVGGAVELAPGYLKLV  277 (477)
Q Consensus       210 ~~~--~~~~~~~~~~~~~~~~~~~----~~----~~~~~~le~~i~~--~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l  277 (477)
                      .+.  .+++.++++|++++++++.    +.    ..+++.+++++..  ..++++|+||+||+|+++|+++|+++||++|
T Consensus       169 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l  248 (457)
T PRK05639        169 GFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKEL  248 (457)
T ss_pred             CCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHH
Confidence            222  2567888888887766542    11    1244567766532  2357899999999999999999999999999


Q ss_pred             HHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHH
Q 011777          278 YDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVC  357 (477)
Q Consensus       278 ~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~  357 (477)
                      +++|++||+++|+||||+||||+| .+|+++++|+.||+++|||+++||+|+|++++++++++ +....+.+||++||++
T Consensus       249 ~~lc~~~g~llI~DEv~tG~GrtG-~~~a~~~~gv~PDiv~~gK~l~gG~pi~av~~~~~i~~-~~~~~~~~T~~g~p~~  326 (457)
T PRK05639        249 KKLLDEHGILLVMDEVQTGIGRTG-KWFASEWFEVKPDLIIFGKGVASGMGLSGVIGRKELMD-LTSGSALLTPAANPVI  326 (457)
T ss_pred             HHHHHHcCCEEEEechhhccCcCc-hHHHHHhcCCCCCEEEechhhcCCCcceeEEehHHHHh-hcCCCcccCCCcCHHH
Confidence            999999999999999999999999 78999999999999999999999999999999999998 3334567899999999


Q ss_pred             HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcC
Q 011777          358 SAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELG  437 (477)
Q Consensus       358 ~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~G  437 (477)
                      |+|++++|++++++++++++++++++|+++|+++..+++.+.++||.|+|+++++..+..  .++......+.+.|+++|
T Consensus       327 ~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~--~~~~~~~~~~~~~~~~~G  404 (457)
T PRK05639        327 SAAAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENG--KPDPELTGKICWRAFELG  404 (457)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhCCCEEeeccceeEEEEEEecCCC--CCCHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999998999999999999999999975422  234445678899999999


Q ss_pred             ceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          438 VLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       438 v~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +++.+.+..++++||.||+++|++|||+++++|++++++
T Consensus       405 v~~~~~g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~  443 (457)
T PRK05639        405 LILPSYGMFGNVIRITPPLVITKEIAEKGLEIMERAIKD  443 (457)
T ss_pred             eEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence            999876555689999999999999999999999999864

>PRK07481 hypothetical protein; Provisional

Probab=100.00  E-value=5.1e-75  Score=594.28  Aligned_cols=396  Identities=34%  Similarity=0.565  Sum_probs=347.2

Q ss_pred             CceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc--ccCChHHHHHHHHHHhhCC-CC
Q 011777           78 KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT--IYLHHAIADFAEALASKMP-GN  154 (477)
Q Consensus        78 ~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~--~~~~~~~~~l~~~La~~~~-~~  154 (477)
                      .|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+...  .+.++...+++++|++.+| .+
T Consensus        24 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~  103 (449)
T PRK07481         24 PPIIIVRGDGVYVYDIDGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAPEG  103 (449)
T ss_pred             CCceEEeccccEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceecccccCCHHHHHHHHHHHHhcCCCC
Confidence            58999999999999999999999999999999999999999999999998766433  3578889999999999984 45


Q ss_pred             CCEEEEeCChHHHHHHHHHHHHhcc------CCceEEEEccCccCCcccccccccCCCCCCCCC--CCCeeeecCCCCcC
Q 011777          155 LKVVYFVNSGTEANELAMLMARLST------GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP--QGEIHHVVNPDPYH  226 (477)
Q Consensus       155 ~~~v~~~~sGseA~~~Al~~ar~~~------~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  226 (477)
                      .++|+|++|||||+|+|+|+||.++      +|.+||.++++|||++.+++++++...++..+.  .+++.+++.|+.++
T Consensus       104 ~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~  183 (449)
T PRK07481        104 MRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYR  183 (449)
T ss_pred             CCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccc
Confidence            7899999999999999999999985      688999999999999999999887654443322  25788888888888


Q ss_pred             CCCC-CCHH----HHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCC
Q 011777          227 GSFG-SDAA----RYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTG  301 (477)
Q Consensus       227 ~~~~-~~~~----~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G  301 (477)
                      ++++ .|..    .+.+.+|++|...+++++|+||+||+|+++|+++|+++||++|+++|++||+++|+|||||||||+|
T Consensus       184 ~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG  263 (449)
T PRK07481        184 NPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTG  263 (449)
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCc
Confidence            8887 2322    2345677777644567899999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcc-------cccccCCCCcHHHHHHHHHHHHhhchhhH
Q 011777          302 SHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQ-------KIQFNTFGGNPVCSAGGLAVLRVIDKERR  373 (477)
Q Consensus       302 ~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~-------~~~~~t~~~~~~~~aaa~a~l~~l~~~~~  373 (477)
                       .+|+++++|+.||++|+||+++|| +|+|++++++++++.+..       ..|++||++||++|+|++++|++++++++
T Consensus       264 -~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l  342 (449)
T PRK07481        264 -SWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDL  342 (449)
T ss_pred             -hhhHhhhcCCCCCEEEEeecccCCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhH
Confidence             799999999999999999999999 599999999999998753       25789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCcc---HHHHHHHHHHHHHcCceeeccCCCCCEE
Q 011777          374 QAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA---KAETAVLFEKLRELGVLVGKGGLHGNVF  450 (477)
Q Consensus       374 ~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~---~~~~~~~~~~l~~~Gv~v~~~~~~~~~i  450 (477)
                      ++++++++++|+++|+++.++++.+.++||.|+|+++++..+...+.+.   ......+.+.|+++||++.+.   ++.+
T Consensus       343 ~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~---g~~i  419 (449)
T PRK07481        343 PANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPS---GTKI  419 (449)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEec---CCEE
Confidence            9999999999999999999889999999999999999997654333332   234567888999999999875   3579


Q ss_pred             EEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          451 RIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       451 Ri~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      ||+||+++|++|||+++++|+++++++
T Consensus       420 ~l~Ppl~it~~eid~~~~~l~~~l~~~  446 (449)
T PRK07481        420 ILSPPLVIQREDVDRIVDALDAGLSAV  446 (449)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999998753

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=7.4e-75  Score=593.47  Aligned_cols=419  Identities=30%  Similarity=0.477  Sum_probs=351.8

Q ss_pred             CHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc-cccc
Q 011777           56 SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH-ATTI  134 (477)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~-~~~~  134 (477)
                      .+++++++..++.+.........|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|+++..+ ....
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~~~~~~   97 (459)
T PRK06931         18 TNETYLARQAEFESNVRSYPRKLPLAIAKAQGVWVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHTLD   97 (459)
T ss_pred             chHHHHHHHHhhhhhccccccCCCceEEeccccEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhccccccc
Confidence            345677776655322111111458999999999999999999999999999999999999999999999986432 2223


Q ss_pred             cCChHHHHHHHHHHhhCCCCC---CEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCC
Q 011777          135 YLHHAIADFAEALASKMPGNL---KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI  211 (477)
Q Consensus       135 ~~~~~~~~l~~~La~~~~~~~---~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  211 (477)
                      +.++...+|+++|++.+|...   ..++|+||||||+|.|||+||.+++|.+||.++++|||++.+++++++...++..+
T Consensus        98 ~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~  177 (459)
T PRK06931         98 LTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAV  177 (459)
T ss_pred             cCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCC
Confidence            567888999999999987532   34577799999999999999999999999999999999999999988765444333


Q ss_pred             C--CCCeeeecCCCCcCCCCCCCHHHHH----HHHHHHHhc--cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHH
Q 011777          212 P--QGEIHHVVNPDPYHGSFGSDAARYA----QDLQDHIDF--GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK  283 (477)
Q Consensus       212 ~--~~~~~~~~~~~~~~~~~~~~~~~~~----~~le~~i~~--~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~  283 (477)
                      .  .+++.+++.|+.++++++.....+.    +.+++.+..  ...+++|+||+||+|+++|+++++++||++|+++|++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~  257 (459)
T PRK06931        178 NGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQK  257 (459)
T ss_pred             CCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHH
Confidence            2  2578889999999988874322222    234444432  1346799999999999999999999999999999999


Q ss_pred             hCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHH
Q 011777          284 AGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLA  363 (477)
Q Consensus       284 ~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a  363 (477)
                      ||+++|+|||||||||+| .+|+++++|+.|||+|+||+++||+|+|++++++++ +.+....|++||++||++|+++++
T Consensus       258 ~g~LlI~DEV~tGfGRtG-~~~a~~~~gv~PDivt~gK~l~gG~Pi~av~~~~~~-~~~~~~~~~~T~~gnpla~aaala  335 (459)
T PRK06931        258 HGILLIVDEVQAGFARTG-KMFAFEHAGIEPDIIVMSKAVGGGLPLAVLGIKKEF-DAWQPGGHTGTFRGNQLAMATGLT  335 (459)
T ss_pred             cCCEEEEecchhcCCcCc-hHHHhhhcCCCCCEEEecccccCCcceeeeeeHHHH-hhccCCCCCCCCCCCHHHHHHHHH
Confidence            999999999999999999 799999999999999999999999999999988775 766656789999999999999999


Q ss_pred             HHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCC-----Cc-cHHHHHHHHHHHHHcC
Q 011777          364 VLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEK-----TP-AKAETAVLFEKLRELG  437 (477)
Q Consensus       364 ~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~-----~~-~~~~~~~~~~~l~~~G  437 (477)
                      +|++++++++++++++++++|+++|+++.++++.+.++||.|+|+++++.++...+     .+ +......+.+.|+++|
T Consensus       336 ~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  415 (459)
T PRK06931        336 TLKILKEENLAQNAAERGEWLKAQLAELQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFENG  415 (459)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999899999999999999999997643221     12 2334567888999999


Q ss_pred             ceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          438 VLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       438 v~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      |++.+.+..++++||.||+++|++|||+++++|++++++
T Consensus       416 vl~~~~~~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~  454 (459)
T PRK06931        416 LLLERGGRNGNVVRLLPPLLITQAECEEFIDRFEQALLA  454 (459)
T ss_pred             cEEeecCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHH
Confidence            999876656789999999999999999999999999864

>PRK07483 hypothetical protein; Provisional

Probab=100.00  E-value=6.5e-75  Score=591.94  Aligned_cols=399  Identities=35%  Similarity=0.534  Sum_probs=345.3

Q ss_pred             cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-ccCChHHHHHHHHHHhhCCCCC
Q 011777           77 QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-IYLHHAIADFAEALASKMPGNL  155 (477)
Q Consensus        77 ~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~-~~~~~~~~~l~~~La~~~~~~~  155 (477)
                      ..|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|++++.+... .+.++...+|+++|++.+|.+.
T Consensus        11 ~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~   90 (443)
T PRK07483         11 ATLPVAVAGEGIYLIDATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVAAAPAGL   90 (443)
T ss_pred             CCCceEEeceEEEEEeCCCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCC
Confidence            458999999999999999999999999999999999999999999999998764333 3568889999999999998777


Q ss_pred             CEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccCCCCCCCCC--CCCeeeecCCCCcCC
Q 011777          156 KVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP--QGEIHHVVNPDPYHG  227 (477)
Q Consensus       156 ~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  227 (477)
                      ++++|+||||||||.|+|+||.+      ++|.+||.|+++|||++.+++++++...++..+.  ..++.+++.|..|++
T Consensus        91 ~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~  170 (443)
T PRK07483         91 EHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYRE  170 (443)
T ss_pred             CEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccc
Confidence            89999999999999999999998      6788999999999999999999987654433222  245667777766665


Q ss_pred             CCCC-C----HHHHHHHHHHHHhccCCCCeeEEEecccCC-CCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCC
Q 011777          228 SFGS-D----AARYAQDLQDHIDFGTSGKVAGFIAETIQG-VGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTG  301 (477)
Q Consensus       228 ~~~~-~----~~~~~~~le~~i~~~~~~~~a~vi~epi~~-~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G  301 (477)
                      +... +    ...+++++++++...+.+++++||+||+|| ++|+++|+++||++|+++|++||+++|+|||||||||||
T Consensus       171 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG  250 (443)
T PRK07483        171 QRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTG  250 (443)
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCc
Confidence            4321 1    122456777777544457899999999998 589999999999999999999999999999999999999


Q ss_pred             CCCccccccCCCcceeeecccccCcc-ceEEEEeCHHHHHhhccc----ccccCCCCcHHHHHHHHHHHHhhchhhHHHH
Q 011777          302 SHYWGFETQGVIPDIVTMAKGIGNGL-PLGAVVTTPEIANVMAQK----IQFNTFGGNPVCSAGGLAVLRVIDKERRQAH  376 (477)
Q Consensus       302 ~~~~~~~~~gv~pDivt~sK~lg~G~-pig~v~~~~~~~~~~~~~----~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~  376 (477)
                       ++|+++++++.|||+|+||+++||+ |+|++++++++++.+...    .|++||++||++|++++++|+++++++++++
T Consensus       251 -~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~  329 (443)
T PRK07483        251 -TLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGLLAN  329 (443)
T ss_pred             -HHHHHhhcCCCCCeeeehhhhccCccccEEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHH
Confidence             8999999999999999999999996 999999999999887532    4789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCcc---HHHHHHHHHHHHHcCceeeccC-----CCCC
Q 011777          377 CADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA---KAETAVLFEKLRELGVLVGKGG-----LHGN  448 (477)
Q Consensus       377 ~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~---~~~~~~~~~~l~~~Gv~v~~~~-----~~~~  448 (477)
                      +++++++|+++|+++.++++.+.++||.|+|+++++..+..++.|.   ......+.+.++++||++.+.+     ..++
T Consensus       330 ~~~~g~~l~~~L~~l~~~~~~i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~  409 (443)
T PRK07483        330 VRARGEQLRARLRERLGQHPHVGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTIDGVRGD  409 (443)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCeeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCccccCCCCC
Confidence            9999999999999998889999999999999999998654443331   2345678899999999997653     2358


Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          449 VFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       449 ~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ++||.||+++|++|||+++++|++++++
T Consensus       410 ~l~~~PpL~it~~eid~~~~~l~~~l~~  437 (443)
T PRK07483        410 HVLLAPPFIITAAQIDEIVERLGDAIDA  437 (443)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999864

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=4.1e-74  Score=588.03  Aligned_cols=417  Identities=27%  Similarity=0.442  Sum_probs=353.8

Q ss_pred             CCCHHHHHHHHhhhcCCCccc---cc-c-CceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhc
Q 011777           54 GPSADQVFQKRKQFLGPSIFH---YY-Q-KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL  128 (477)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~---~~-~-~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~  128 (477)
                      .+.+++++++..++++.....   .+ . .|+.+++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l   96 (472)
T PRK08742         17 AQTAEHWRQRDLAVLWHPCTQMREHPHTLPLVPIARGEGAWLVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGEL   96 (472)
T ss_pred             cCcHHHHHHhhhcccccCCcccccccccCCCeeEEecccCEEEeCCCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhC
Confidence            345567777766665432222   11 1 247899999999999999999999999999999999999999999999987


Q ss_pred             ccccc-ccCChHHHHHHHHHHhhCCC-----CCCEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcc
Q 011777          129 QHATT-IYLHHAIADFAEALASKMPG-----NLKVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSS  196 (477)
Q Consensus       129 ~~~~~-~~~~~~~~~l~~~La~~~~~-----~~~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~  196 (477)
                      .+... .+.++...+|+++|++.+|.     ++++|+|++|||||||.|||+||.+      ++|.+||+++++|||++.
T Consensus        97 ~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~  176 (472)
T PRK08742         97 EQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETI  176 (472)
T ss_pred             CCccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCch
Confidence            65443 46688899999999999875     4679999999999999999999998      568899999999999999


Q ss_pred             cccccccCCCCCCCCCC--CCeeeecCCCCcCCCCCCCHH----HHHHHHHHHHhccCCCCeeEEEecc-cCCCCCeeeC
Q 011777          197 GTIGLTALNTWKYPIPQ--GEIHHVVNPDPYHGSFGSDAA----RYAQDLQDHIDFGTSGKVAGFIAET-IQGVGGAVEL  269 (477)
Q Consensus       197 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~le~~i~~~~~~~~a~vi~ep-i~~~~G~~~~  269 (477)
                      ++++.++...++..+.+  +++.+++.|+.++++++....    .+++.++++++ .+++++++||+|| +||++|+++|
T Consensus       177 gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~iAAvI~EPviqg~gG~~~~  255 (472)
T PRK08742        177 GALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFE-QSPGEICALILEPRLQCAGGMRMH  255 (472)
T ss_pred             hhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHH-hCCCceEEEEEccccccCCCcccC
Confidence            99999876555443322  467788888888776654332    24567777776 2357899999999 6999999999


Q ss_pred             CchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcc----
Q 011777          270 APGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQ----  344 (477)
Q Consensus       270 ~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~----  344 (477)
                      +++||++|+++|++||++||+|||||||||+| .+|+++++|+.||++|+||+++|| +|+|++++++++++.+..    
T Consensus       256 p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG-~~~a~e~~gv~PDiv~~gKgl~gG~~Plaav~~~~ei~~~~~~~~~~  334 (472)
T PRK08742        256 HPAYLRRARELCDAHGAFLIADEIATGFGRTG-TLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRE  334 (472)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEechhhCCCCCc-cchHHHhcCCCCCEEEEcccccCCCCCcceeeccHHHHHHhhccCcc
Confidence            99999999999999999999999999999999 899999999999999999999999 599999999999987742    


Q ss_pred             --cccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCcc
Q 011777          345 --KIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA  422 (477)
Q Consensus       345 --~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~  422 (477)
                        ..|++||++||++|+|++++|++++++++.++++++++++++.++.+ .+++.+.++||.|+|++++++.+..++.+.
T Consensus       335 ~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g~~l~~~~~~~-~~~~~i~dvRG~Gl~~giel~~~~~~~~~~  413 (472)
T PRK08742        335 RAFLHSHSYTGNPLACAAALATLDIFADDDVIARNQPTAARMTQLAAQI-GEHPHVADVRQAGMVVAFELTRGGNKRTPF  413 (472)
T ss_pred             CccCcCCCCCccHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-hcCCCeeeEeccceEEEEEeccCccccccC
Confidence              24789999999999999999999999999999999999999877765 568999999999999999998655444332


Q ss_pred             ---HHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          423 ---KAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       423 ---~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                         ......+.+.++++||++.+.   +++|||.||+++|++||++++++|++++++
T Consensus       414 ~~~~~~~~~~~~~~~~~Gll~~~~---g~vi~~~PpL~it~~ei~~~~~~l~~~l~~  467 (472)
T PRK08742        414 PPAARVGLHAYRAALARGVVLRPL---GDVLYWMPPYCVDEAQLALLADTTRHAIDE  467 (472)
T ss_pred             CchhHHHHHHHHHHHHCCeEEEec---CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence               123467888999999999875   489999999999999999999999999875

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=100.00  E-value=1.5e-74  Score=585.88  Aligned_cols=395  Identities=30%  Similarity=0.497  Sum_probs=338.9

Q ss_pred             HHHHHHHHhhhcCCCcccccc--------C-ceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhh
Q 011777           57 ADQVFQKRKQFLGPSIFHYYQ--------K-PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKL  127 (477)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~--------~-p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~  127 (477)
                      .++.++++++++.+.. ..+.        . ++.+++++|+||||.|||+||||.+|++++++||+||+|++|+.+|+++
T Consensus        28 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~  106 (442)
T TIGR03372        28 NQEVIECFKEHVNPGF-LEYRKSVTAGGDYGAVEWQAGGLNTLIDTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAK  106 (442)
T ss_pred             cHHHHHHHhhccCHHH-HHHHHhhhccCCCCeeEEEeCCeeEEEECCCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHh
Confidence            3567777777765442 1111        1 2345677789999999999999999999999999999999999999998


Q ss_pred             ccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhcc---CCceEEEEccCccCCcccccccccC
Q 011777          128 LQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLST---GNLGMIALRNAYHGGSSGTIGLTAL  204 (477)
Q Consensus       128 ~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~---~~~~ii~~~~~yhG~~~~~~~~~~~  204 (477)
                      +.+.+..+.++...+|+++|++.+|.+.++++|+||||||||+|+|+||.++   ||.+||+++++|||++.++++.++.
T Consensus       107 l~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~  186 (442)
T TIGR03372       107 QPLHSQELLDPLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAK  186 (442)
T ss_pred             CCCcccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCC
Confidence            7765544568889999999999998877899999999999999999999996   8889999999999999999999876


Q ss_pred             CCCCCCCC--CCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc--cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHH
Q 011777          205 NTWKYPIP--QGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF--GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDI  280 (477)
Q Consensus       205 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~--~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l  280 (477)
                      +.++....  .+++.++++++             .+++++.++.  .+++++++||+||+++++|+++|+++||++|+++
T Consensus       187 ~~~~~~~~p~~~~~~~~p~~d-------------~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~l  253 (442)
T TIGR03372       187 PAFRKPFMPLLPGFHHVAFGD-------------IEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRAL  253 (442)
T ss_pred             cccCCCCCCCCCCCEEeCCCC-------------HHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHH
Confidence            55433222  24566665443             2445555532  2346899999999999999999999999999999


Q ss_pred             HHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhc--ccccccCCCCcHHH
Q 011777          281 VRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMA--QKIQFNTFGGNPVC  357 (477)
Q Consensus       281 ~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~--~~~~~~t~~~~~~~  357 (477)
                      |++||+++|+||||+||||+| .+|+++++|+.||++||||++||| +|+|++++++++++.+.  ...|++||++||++
T Consensus       254 c~~~g~llI~DEV~tG~GRtG-~~~a~e~~gv~PDivt~gK~lg~G~~Pigavv~~~~i~~~~~~~~~~~~~T~~gnp~~  332 (442)
T TIGR03372       254 CDEFGALLILDEVQTGMGRTG-KMFACEHEGVQPDILCLAKALGGGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLA  332 (442)
T ss_pred             HHHcCCEEEEeecccCCCccc-cchhhhhcCCCCCeeeehhhhcCCcccceEEEecHHHHHhhhccCccccCCCCCCHHH
Confidence            999999999999999999999 799999999999999999999999 79999999999998884  33688999999999


Q ss_pred             HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCC-CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc
Q 011777          358 SAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHD-IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLREL  436 (477)
Q Consensus       358 ~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~-~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~  436 (477)
                      |+|++++|++++++++.+++++++++++++|+++..+++ .+.++||.|+|+++++.++        .....+.+.|+++
T Consensus       333 ~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~vRG~Gl~~giel~~~--------~~~~~i~~~l~~~  404 (442)
T TIGR03372       333 CAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEFRDN--------EIGYAFAKELFQQ  404 (442)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecceEEEEEEeCCh--------HHHHHHHHHHHHC
Confidence            999999999999999999999999999999999998898 7899999999999999642        2346788999999


Q ss_pred             CceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          437 GVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       437 Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      ||++.+.+..++++||.||+++|++|+|+++++|++++
T Consensus       405 Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~~~~l~~~~  442 (442)
T TIGR03372       405 NILVAGTLNNAKSIRIEPPLTITIEQCALVIKAAKDAL  442 (442)
T ss_pred             CcEEeecCCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence            99998654446899999999999999999999999864

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=7.1e-74  Score=585.31  Aligned_cols=411  Identities=27%  Similarity=0.434  Sum_probs=349.5

Q ss_pred             HHHHHHHHhhhcCCCccc--cc--cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccc
Q 011777           57 ADQVFQKRKQFLGPSIFH--YY--QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT  132 (477)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~--~~--~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~  132 (477)
                      .+++.++.+++++.....  .+  ..|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~   90 (453)
T PRK06943         11 TDDWVARSLRAVWHPCTQMKHHERLPLLPVARGEGAWLYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAM   90 (453)
T ss_pred             hhhHHHHhhcccccCCcCccccccCCCceEEecccCEEEeCCCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCcc
Confidence            355666666664322211  11  24899999999999999999999999999999999999999999999999876644


Q ss_pred             c-ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccCC
Q 011777          133 T-IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTALN  205 (477)
Q Consensus       133 ~-~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~  205 (477)
                      . .+.++...+|+++|++..|...++|+|++|||||||.|+|+||.+      ++|.+||+++++|||++.+++++++..
T Consensus        91 ~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~  170 (453)
T PRK06943         91 LAGCTHEPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVA  170 (453)
T ss_pred             ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCCh
Confidence            3 456888999999999999876789999999999999999999764      568899999999999999999999866


Q ss_pred             CCCCCCCC--CCeeeecCCCCcCCCCCCCH----HHHHHHHHHHHhccCCCCeeEEEecc-cCCCCCeeeCCchhHHHHH
Q 011777          206 TWKYPIPQ--GEIHHVVNPDPYHGSFGSDA----ARYAQDLQDHIDFGTSGKVAGFIAET-IQGVGGAVELAPGYLKLVY  278 (477)
Q Consensus       206 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~le~~i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~  278 (477)
                      .++..+.+  .++..++.|+.++.++....    ..++++++++++. +++++++||+|| +||++|+++++++||++|+
T Consensus       171 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr  249 (453)
T PRK06943        171 LFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAE-RAGKIAALIVEPLVQCAAGMAMHDPSYLRGLR  249 (453)
T ss_pred             hhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHh-CCCceEEEEEeccccccCCcccCCHHHHHHHH
Confidence            55543322  45667777776665554322    2345777877763 457899999999 5999999999999999999


Q ss_pred             HHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcc------cccccCC
Q 011777          279 DIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQ------KIQFNTF  351 (477)
Q Consensus       279 ~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~------~~~~~t~  351 (477)
                      ++|++||+++|+|||||||||+| ++|+++++|+.||++|+||+++|| +|+|++++++++++.+..      ..|++||
T Consensus       250 ~lc~~~gillI~DEV~TG~GRtG-~~fa~~~~gv~PDivt~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~  328 (453)
T PRK06943        250 ALCDRYGVHLIADEIAVGCGRTG-TFFACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSY  328 (453)
T ss_pred             HHHHHcCCEEEeechhhCCCCCc-chhHHHhCCCCCCeEeeehhhccCcccceEEEEcHHHHHhhcccCccCCccCCCCC
Confidence            99999999999999999999999 899999999999999999999999 599999999999988753      2478999


Q ss_pred             CCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHH
Q 011777          352 GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFE  431 (477)
Q Consensus       352 ~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~  431 (477)
                      ++||++|++++++|++++++++++++++++++|+++|+++. +++.+.++||.|+|+++++..+.   .+.......+.+
T Consensus       329 ~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~-~~~~v~~vrG~Gl~~gvel~~~~---~~~~~~~~~i~~  404 (453)
T PRK06943        329 TGNPLACRAALATLDLFAEDDVLARNARKSARLRAALAPLA-AHPQVRHLRQRGTIFAFDVALDG---DAARTFSRRFFE  404 (453)
T ss_pred             CCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh-cCCCEEeEeccccEEEEEEccCC---CcchHHHHHHHH
Confidence            99999999999999999999999999999999999999985 57888899999999999997432   223334567889


Q ss_pred             HHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          432 KLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       432 ~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .++++||++.+.   ++.+||+||+++|++|||+++++|++++++
T Consensus       405 ~~~~~Gll~~~~---g~~l~~~Ppl~it~~eid~~~~~l~~al~~  446 (453)
T PRK06943        405 AALERELLLRPI---GTTVYLMPPYVLDDDEIAWLAERTRATLDA  446 (453)
T ss_pred             HHHHCCcEEEec---CCEEEEeCCCcCCHHHHHHHHHHHHHHHHH
Confidence            999999999865   468999999999999999999999999875

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=1.4e-73  Score=584.69  Aligned_cols=416  Identities=31%  Similarity=0.484  Sum_probs=357.2

Q ss_pred             CHHHHHHHHhhhcCCCcc--ccc--cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccc
Q 011777           56 SADQVFQKRKQFLGPSIF--HYY--QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA  131 (477)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~--~~~--~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~  131 (477)
                      +++++++++.++++....  ..+  ..|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~   91 (460)
T PRK06916         12 TYEELSEKNKAYVWHPFTQMKDYLEEDPLIIERGEGRKLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHS   91 (460)
T ss_pred             ChHHHHHHHhhccccccccccccccCCCeeEEeccccEEEeCCCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCCc
Confidence            346788887777653322  112  4589999999999999999999999999999999999999999999999987665


Q ss_pred             cc-ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccC
Q 011777          132 TT-IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTAL  204 (477)
Q Consensus       132 ~~-~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~  204 (477)
                      .. .+.++...+|+++|++.+|..+++++|+||||||||.|+|+||.+      ++|.+||.|+++|||.+.+++++++.
T Consensus        92 ~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~  171 (460)
T PRK06916         92 TLLGLANVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAI  171 (460)
T ss_pred             cccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCC
Confidence            43 356888999999999999877789999999999999999999984      67899999999999999999999876


Q ss_pred             CCCCCCCCC--CCeeeecCCCCcCCCCCCCHH----HHHHHHHHHHhccCCCCeeEEEecc-cCCCCCeeeCCchhHHHH
Q 011777          205 NTWKYPIPQ--GEIHHVVNPDPYHGSFGSDAA----RYAQDLQDHIDFGTSGKVAGFIAET-IQGVGGAVELAPGYLKLV  277 (477)
Q Consensus       205 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~le~~i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l  277 (477)
                      ..++..+.+  .++..++.|+.++++++.+..    .++++++++++ .+++++|+||+|| +|+++|+++|+++||++|
T Consensus       172 ~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~l  250 (460)
T PRK06916        172 DLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLK-EKHEEIAAIIVEPLVQGAGGMITMPKGYLKGL  250 (460)
T ss_pred             cccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHH-hCCCcEEEEEEeccccCCCCcccCCHHHHHHH
Confidence            555433322  467778888878776653332    34667777776 3457899999999 799999999999999999


Q ss_pred             HHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcc-------ccccc
Q 011777          278 YDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQ-------KIQFN  349 (477)
Q Consensus       278 ~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~-------~~~~~  349 (477)
                      +++|++||+++|+|||||||||+| ++|+++++|+.||++|+||+++|| +|+|++++++++++.+..       ..|++
T Consensus       251 r~lc~~~g~llI~DEV~TG~GRtG-~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~  329 (460)
T PRK06916        251 RNLCTKYNVLFITDEVATGFGRTG-KMFACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGH  329 (460)
T ss_pred             HHHHHHcCCEEEeechhhCCCcCc-hhhHHHhcCCCCCeeeeehhhhcCccccceeeecHHHHHHhhccccccCccccCC
Confidence            999999999999999999999999 799999999999999999999999 599999999999987642       34788


Q ss_pred             CCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCcc---HHHH
Q 011777          350 TFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA---KAET  426 (477)
Q Consensus       350 t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~---~~~~  426 (477)
                      ||++||++|++++++|+++++++++++++++++++++.|+++.+ ++.+.++||.|+|+++++..+...+++.   ....
T Consensus       330 T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~l~~l~~-~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~  408 (460)
T PRK06916        330 SYTGNPLGCAVALANLELYEKTNLIEQVARKTEYVATQLEDLFA-LKHVGDIRQLGLMVGIELVKNKETKEPFEWTERVG  408 (460)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhc-CCCeEEeecCCceeeEEeecccccccCCCchhhHH
Confidence            99999999999999999999999999999999999999999864 8889999999999999998654444332   1234


Q ss_pred             HHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          427 AVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       427 ~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      ..+.+.|+++||++.+.   ++++||.||+++|++||++++++|+++++++
T Consensus       409 ~~i~~~~~~~Gvl~~~~---g~~l~~~Ppl~it~~~id~~~~~l~~~l~~~  456 (460)
T PRK06916        409 VQVCKRSRELGMLTRPL---GNTIVFMPPLASTIDELDEMLRILYKAISDV  456 (460)
T ss_pred             HHHHHHHHHCCeEEEec---CCEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence            67889999999999875   4799999999999999999999999998753

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=1.2e-73  Score=584.87  Aligned_cols=392  Identities=26%  Similarity=0.452  Sum_probs=343.3

Q ss_pred             ceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-ccCChHHHHHHHHHHhhCCCCCCE
Q 011777           79 PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-IYLHHAIADFAEALASKMPGNLKV  157 (477)
Q Consensus        79 p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~-~~~~~~~~~l~~~La~~~~~~~~~  157 (477)
                      |+++++|+|+||||.|||+||||.+|+++.++||+||+|++|+.+|++++.+... .+.++...+|+++|++.+|.+.++
T Consensus        30 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~  109 (466)
T PRK07030         30 LIPIRRGEGVWLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAGFSHEPVIELSERLVKITPPGLSR  109 (466)
T ss_pred             CceEEeeeccEEEECCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCcCE
Confidence            4689999999999999999999999999999999999999999999998766543 467888999999999999877789


Q ss_pred             EEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccCCCCCCCCCC--CCeeeecCCCCcCCCC
Q 011777          158 VYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ--GEIHHVVNPDPYHGSF  229 (477)
Q Consensus       158 v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  229 (477)
                      |+|+||||||||.|+|+||.+      ++|.+||+++++|||++.+++++++...++..+.+  .++.+++.|+.+++++
T Consensus       110 v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~  189 (466)
T PRK07030        110 CFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPE  189 (466)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCcccccc
Confidence            999999999999999999887      57889999999999999999998876544433222  4677788888777765


Q ss_pred             CCCHH----HHHHHHHHHHhccCCCCeeEEEecc-cCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCC
Q 011777          230 GSDAA----RYAQDLQDHIDFGTSGKVAGFIAET-IQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHY  304 (477)
Q Consensus       230 ~~~~~----~~~~~le~~i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~  304 (477)
                      +....    .+++++++++. .+++++|+||+|| +|+++|+++++++||++|+++|++||+++|+|||||||||+| .+
T Consensus       190 ~~~~~~~~~~~l~~le~~~~-~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG-~~  267 (466)
T PRK07030        190 GMSWEEHSRRMFAHMEQTLA-EHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTG-TM  267 (466)
T ss_pred             CCCHHHHHHHHHHHHHHHHH-hCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccc-cc
Confidence            54332    24567788776 3457899999999 799999999999999999999999999999999999999999 79


Q ss_pred             ccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcc-------cccccCCCCcHHHHHHHHHHHHhhchhhHHHH
Q 011777          305 WGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQ-------KIQFNTFGGNPVCSAGGLAVLRVIDKERRQAH  376 (477)
Q Consensus       305 ~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~-------~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~  376 (477)
                      |+++++|+.||++|++|+++|| +|+|++++++++++.+..       ..|++||++||++|++++++|+++++++++++
T Consensus       268 ~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~  347 (466)
T PRK07030        268 FACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIEN  347 (466)
T ss_pred             hHHHhcCCCCCEEeeehhccCCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHH
Confidence            9999999999999999999999 599999999999988742       25889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCcc---HHHHHHHHHHHHHcCceeeccCCCCCEEEEe
Q 011777          377 CADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA---KAETAVLFEKLRELGVLVGKGGLHGNVFRIK  453 (477)
Q Consensus       377 ~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~---~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~  453 (477)
                      +++++++|+++|+++. +++.+.++||.|+|+++++..+...+.|.   ......+.+.++++||++.+.   ++++||.
T Consensus       348 ~~~~G~~l~~~L~~l~-~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~---g~~i~~~  423 (466)
T PRK07030        348 NRALARRMAEATAHLA-DHPHVAEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPL---GSVVYFL  423 (466)
T ss_pred             HHHHHHHHHHHHHHHh-cCCCEEEeEeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEec---CCEEEEE
Confidence            9999999999999985 68899999999999999998654433332   122457888999999999864   4789999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHhh
Q 011777          454 PPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       454 p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ||+++|++||++++++|++++++
T Consensus       424 Ppl~it~~eid~~~~~l~~al~~  446 (466)
T PRK07030        424 PPYVITPEQIDFLAEVASEGIDI  446 (466)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999875

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=3.3e-73  Score=581.32  Aligned_cols=418  Identities=25%  Similarity=0.421  Sum_probs=356.0

Q ss_pred             CCCCCCCHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc
Q 011777           50 KPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ  129 (477)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~  129 (477)
                      .++++|++++++++..+++..... ....|+++++|+|+||||.|||+||||++ .+++++||+||+|++|+.+|++++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~a~G~~l~D~dG~~ylD~~g-~~~~~lGh~~p~v~~Ai~~ql~~~~  104 (459)
T PRK06082         27 ASMNDERTQALLKRDSEVFLHQAM-STPCLDVLASAEGIYIEDVDGKKYMDFHG-NNVHQLGYGHPHVIEKVKEQMAKLP  104 (459)
T ss_pred             ccCCCcchHHHHHHHHHHhccccc-CCCCCceEEeeeeeEEEECCCCEEEEccc-HhhcccCCCCHHHHHHHHHHHHhCC
Confidence            345666777776655554432211 12337899999999999999999999974 4889999999999999999999877


Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +....+.++...+|+++|++.+|...++++|++||+||+++|+|+||.+++|.+||+|+++|||++.+++++++...++.
T Consensus       105 ~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~  184 (459)
T PRK06082        105 FSPRRFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQ  184 (459)
T ss_pred             CccCccCCHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCccccc
Confidence            65555678999999999999998767899999999999999999999999999999999999999999998887655443


Q ss_pred             CCC--CCCeeeecCCCCcCCCCCCCH---HHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHh
Q 011777          210 PIP--QGEIHHVVNPDPYHGSFGSDA---ARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKA  284 (477)
Q Consensus       210 ~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~  284 (477)
                      .+.  .+++..++.|+.+++++++++   ..++++++++++.  .+++++||+||++|++ .++|+++||++|+++|++|
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~--~~~vAavIvEPv~g~g-~~~~~~~yl~~lr~lc~~~  261 (459)
T PRK06082        185 GMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEK--EGGIGAFIAEAVRNTD-VQVPSKAYWKRVREICDKH  261 (459)
T ss_pred             CCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhc--CCCEEEEEECCccCCC-CcCCCHHHHHHHHHHHHHc
Confidence            322  257888888888888776432   2356778888763  3579999999999985 6788999999999999999


Q ss_pred             CcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhccc-ccccCCCCcHHHHHHHH
Q 011777          285 GGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK-IQFNTFGGNPVCSAGGL  362 (477)
Q Consensus       285 gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~-~~~~t~~~~~~~~aaa~  362 (477)
                      |+++|+||||+||||+| .+|+++++|+.||++|+||+++|| +|+|++++++++++.+... .+ +||++||++|++++
T Consensus       262 g~llI~DEV~tG~GRtG-~~fa~e~~gv~PDiv~~gKgl~gG~~P~~av~~~~~i~~~~~~~~~~-~T~~gnpl~~aaa~  339 (459)
T PRK06082        262 NVLLIIDEIPNGMGRTG-EWFTHQAYGIEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQISLGH-YTHEKSPLGCAAAL  339 (459)
T ss_pred             CCEEEEechhhCCCccc-hhhHhHhhCCCCCEEEecccccCCCCcceEEEEcHHHHhhccCCCCC-CCCCcCHHHHHHHH
Confidence            99999999999999999 799999999999999999999999 5999999999988655322 34 79999999999999


Q ss_pred             HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeec
Q 011777          363 AVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGK  442 (477)
Q Consensus       363 a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~  442 (477)
                      ++|++++++++.+++++++++|+++|+++.++++.+.++||.|+|+++++..+...+.+.......+...++++||++.+
T Consensus       340 a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~  419 (459)
T PRK06082        340 ATIEVIEQEGLLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKV  419 (459)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEe
Confidence            99999988899999999999999999999999999999999999999999865444444444567788899999999987


Q ss_pred             cCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          443 GGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       443 ~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .+  ++++||+||+++|++|||++++++++++.+
T Consensus       420 ~~--~~~i~~~Ppl~it~~eid~~~~~l~~~l~~  451 (459)
T PRK06082        420 SQ--GNVIQLSPPLIITREELTQALAILEEAIAK  451 (459)
T ss_pred             cC--CCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence            53  689999999999999999999999999865

>PRK06148 hypothetical protein; Provisional

Probab=100.00  E-value=2.6e-73  Score=628.73  Aligned_cols=418  Identities=46%  Similarity=0.757  Sum_probs=366.5

Q ss_pred             CHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccccc
Q 011777           56 SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY  135 (477)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~  135 (477)
                      +..++++++++++.+.....|..|+.+++|+|+||||.|||+||||.+|+  .++||+||+|++|+.+|++++.. ...+
T Consensus       584 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~g~G~~l~D~dG~~ylD~~~g~--~~lGH~hp~v~~Ai~~q~~~l~~-~~~~  660 (1013)
T PRK06148        584 DKAEILRERKEHLLPNLSISYSDPIKFVRGWGVWLIDNRGRAYLDCFNNV--CHVGHAHPRVVAAAARQAARLNT-NTRY  660 (1013)
T ss_pred             CHHHHHHHHHHhcCcccccccCCCceEEEeeecEEEECCCCEEEEcccCh--hhcCCCCHHHHHHHHHHHhhcCC-cCCc
Confidence            34566777778887776666788999999999999999999999999985  68999999999999999998633 2356


Q ss_pred             CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCC--CC
Q 011777          136 LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI--PQ  213 (477)
Q Consensus       136 ~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~--~~  213 (477)
                      .++...+|+++|++.+|.+.++++|+|||||||++|||+||.+|||.+||+++++|||++.+++++++........  ..
T Consensus       661 ~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~  740 (1013)
T PRK06148        661 LHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRP  740 (1013)
T ss_pred             CCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCC
Confidence            7899999999999999877889999999999999999999999999999999999999999999987632211111  12


Q ss_pred             CCeeeecCCCCcCCCCCCCH----HHHHHHHHHHHhc--cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcE
Q 011777          214 GEIHHVVNPDPYHGSFGSDA----ARYAQDLQDHIDF--GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGV  287 (477)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~----~~~~~~le~~i~~--~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gil  287 (477)
                      .++..++.|++++++|+.+.    ..+.++++++++.  .+++++|+||+||++|++|+++++++||++|+++|++||++
T Consensus       741 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~l  820 (1013)
T PRK06148        741 DHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGV  820 (1013)
T ss_pred             CCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCE
Confidence            45667788888888887432    2355667777652  23468999999999999999999999999999999999999


Q ss_pred             EEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhccc-ccccCCCCcHHHHHHHHHHHH
Q 011777          288 CIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK-IQFNTFGGNPVCSAGGLAVLR  366 (477)
Q Consensus       288 lI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~-~~~~t~~~~~~~~aaa~a~l~  366 (477)
                      +|+|||||||||+|..+|+++++|+.|||+|+||++|||+|+|++++++++++.+... .+++||++||++|+|++++|+
T Consensus       821 lI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~gK~lggG~Plgav~~~~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~  900 (1013)
T PRK06148        821 CIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGNGHPMGAVVTTREIADSFDNGMEYFNTFGGNPVSCAIGLAVLD  900 (1013)
T ss_pred             EEEEecccCCCCCCCcchhhhhcCCCcceeeecccccCCcceEEEEEcHHHHhhccCCCccccCCCCCHHHHHHHHHHHH
Confidence            9999999999999944899999999999999999999999999999999999988654 378999999999999999999


Q ss_pred             hhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC
Q 011777          367 VIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH  446 (477)
Q Consensus       367 ~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~  446 (477)
                      +++++++++++++++++|+++|+++.++++.+.++||.|+|+++++..+..++.|+......+.+.|+++||++.+.+..
T Consensus       901 ~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~  980 (1013)
T PRK06148        901 IIEDEDLQRNALEIGNYLLAGLRELQDRFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPH  980 (1013)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEeccCCC
Confidence            99999999999999999999999999999999999999999999998765556666666778999999999999887666


Q ss_pred             CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          447 GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       447 ~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ++++||.||+++|++|||+++++|++++++
T Consensus       981 ~~vlr~~Ppl~it~~~id~~l~~l~~~l~~ 1010 (1013)
T PRK06148        981 DNVLKIRPPLIFSRADADHLLEVLDDVLAA 1010 (1013)
T ss_pred             CCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999999875

>PRK07480 putative aminotransferase; Validated

Probab=100.00  E-value=2.2e-73  Score=582.21  Aligned_cols=414  Identities=29%  Similarity=0.408  Sum_probs=348.7

Q ss_pred             HHHHHHHhhhcCCCccc---cc-cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc
Q 011777           58 DQVFQKRKQFLGPSIFH---YY-QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT  133 (477)
Q Consensus        58 ~~~~~~~~~~~~~~~~~---~~-~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~  133 (477)
                      .++.++..++++.....   +. ..|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|++++.+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~   87 (456)
T PRK07480          8 AELQALDAAHHLHPFSDMKALNEKGSRVITRAEGVYLWDSEGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNT   87 (456)
T ss_pred             HHHHhhhhcccccCcccccccccCCCceEEeceeeEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccc
Confidence            45555555554332211   11 247899999999999999999999999999999999999999999999998765433


Q ss_pred             --ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccCC
Q 011777          134 --IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTALN  205 (477)
Q Consensus       134 --~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~  205 (477)
                        .+.++...+|+++|++.+|.+.++|+|++|||||+|.|+|+||.+      ++|.+||.++++|||++.+++++++..
T Consensus        88 ~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~  167 (456)
T PRK07480         88 FFKTTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMK  167 (456)
T ss_pred             ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCCh
Confidence              357889999999999999877889999999999999999999998      568889999999999999999988755


Q ss_pred             CCCCCCC--CCCeeeecCCCCcCCCCCCCHHH----HHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHH
Q 011777          206 TWKYPIP--QGEIHHVVNPDPYHGSFGSDAAR----YAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYD  279 (477)
Q Consensus       206 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~  279 (477)
                      .++....  .+++.+++.|..++++++.+...    +.+.+++.+....++++++||+||+|+++|+++++++||++|++
T Consensus       168 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~  247 (456)
T PRK07480        168 YMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQR  247 (456)
T ss_pred             hhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHH
Confidence            4333222  35677888888888766433322    24666655543445789999999999999999999999999999


Q ss_pred             HHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhc--c--cccccCCCCc
Q 011777          280 IVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMA--Q--KIQFNTFGGN  354 (477)
Q Consensus       280 l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~--~--~~~~~t~~~~  354 (477)
                      +|++||+++|+|||||||||+| ++|+++++|+.||++||||+++|| +|+|++++++++++.+.  .  ..|++||++|
T Consensus       248 lc~~~g~llI~DEV~tGfGRtG-~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~gn  326 (456)
T PRK07480        248 ICRKYDILLVADEVICGFGRTG-EWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGH  326 (456)
T ss_pred             HHHHcCCEEEEechhhCCCcCc-chhhhhhcCCCCCeeeeehhhccCCccceEEEEcHHHHHHHhcCCCCcccCCCCCcC
Confidence            9999999999999999999999 899999999999999999999999 49999999999999883  2  2578999999


Q ss_pred             HHHHHHHHHHHHhhchhhHHHHH-HHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCcc---HHHHHHHH
Q 011777          355 PVCSAGGLAVLRVIDKERRQAHC-ADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA---KAETAVLF  430 (477)
Q Consensus       355 ~~~~aaa~a~l~~l~~~~~~~~~-~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~---~~~~~~~~  430 (477)
                      |++|+|++++|++++++++.+++ ++++++|+++|+++ .+++.+.++||.|+|++++++.+...+.+.   ......+.
T Consensus       327 pl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~~l~~l-~~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~  405 (456)
T PRK07480        327 PVAAAVALANLRILRDEGIVERVRDDTGPYLQKRLREL-ADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICR  405 (456)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHh-hcCCCeeeEEeecceEEEEEeccccccccCcchhhHHHHHH
Confidence            99999999999999999999999 69999999999996 578999999999999999997654333331   11235677


Q ss_pred             HHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          431 EKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       431 ~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +.|+++||++.+.   ++.+||+||+++|++|||+++++|++++.+
T Consensus       406 ~~~~~~Gll~~~~---~~~l~~~Ppl~it~~eid~~~~~l~~al~~  448 (456)
T PRK07480        406 DHCFANGLIMRAV---GDRMIISPPLVITHAEIDELVEKARKALDA  448 (456)
T ss_pred             HHHHHCCcEEeec---CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            8899999999764   478999999999999999999999999864

>PRK07036 hypothetical protein; Provisional

Probab=100.00  E-value=3.9e-73  Score=581.85  Aligned_cols=413  Identities=31%  Similarity=0.485  Sum_probs=350.9

Q ss_pred             HHHHHHhhhcCCCcccc----ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccc
Q 011777           59 QVFQKRKQFLGPSIFHY----YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI  134 (477)
Q Consensus        59 ~~~~~~~~~~~~~~~~~----~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~  134 (477)
                      ++++..+++++......    ...|+.+++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+....
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~   89 (466)
T PRK07036         10 ALAQADKRHLLHPWHDFSSLGKEGSLVIVEAEGIYVTDADGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPF   89 (466)
T ss_pred             HHHHHhhcccccCccCccccccCCCceEEeCceeEEEECCCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCcccccc
Confidence            34455556654332211    12489999999999999999999999999999999999999999999999987654432


Q ss_pred             --cCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccCCC
Q 011777          135 --YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTALNT  206 (477)
Q Consensus       135 --~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~  206 (477)
                        +.++...+|+++|++..|.+.++|+|+||||||||.|+|+||.+      ++|.+||.++++|||++.+++++++...
T Consensus        90 ~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~  169 (466)
T PRK07036         90 GDMTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAA  169 (466)
T ss_pred             cccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCc
Confidence              56888999999999999887889999999999999999999988      4578999999999999999999887655


Q ss_pred             CCCCCCC--CCeeeecCCCCcCCCCCCCHHH----HHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHH
Q 011777          207 WKYPIPQ--GEIHHVVNPDPYHGSFGSDAAR----YAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDI  280 (477)
Q Consensus       207 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l  280 (477)
                      ++..+.+  .++.+++.|++++++.+.....    +.+++++.+...+++++|+||+||+++++|+++|+++||++|+++
T Consensus       170 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~l  249 (466)
T PRK07036        170 DRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREI  249 (466)
T ss_pred             ccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHH
Confidence            4433322  4677788888877766543222    345677777644567899999999999999999999999999999


Q ss_pred             HHHhCcEEEEcCcccCccCCCCCCcccc-ccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcc-------cccccCC
Q 011777          281 VRKAGGVCIADEVQTGFGRTGSHYWGFE-TQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQ-------KIQFNTF  351 (477)
Q Consensus       281 ~~~~gillI~DEv~~gfgr~G~~~~~~~-~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~-------~~~~~t~  351 (477)
                      |++||+++|+|||||||||+| ++|+++ ++|+.|||+|+||+++|| +|+|++++++++++.+..       ..+++||
T Consensus       250 c~~~g~llI~DEV~tGfGRtG-~~~~~~~~~gv~PDivt~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~  328 (466)
T PRK07036        250 CRRYDILYISDEVVTGFGRLG-HFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTY  328 (466)
T ss_pred             HHHcCCEEEEeechhCCCcCc-hhhhhhhhcCCCCCEEEEccccccCccccEEEEEcHHHHHHHhcccCcCcccccCCCC
Confidence            999999999999999999999 789998 789999999999999999 599999999999998752       2477899


Q ss_pred             CCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCc---cHHHHHH
Q 011777          352 GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTP---AKAETAV  428 (477)
Q Consensus       352 ~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~---~~~~~~~  428 (477)
                      ++||++|++++++|++++++++++++++++++|+++|+++ .+++.+.++||.|+|++++++.+...+++   +......
T Consensus       329 ~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~  407 (466)
T PRK07036        329 SGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLASL-RELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQR  407 (466)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh-ccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHH
Confidence            9999999999999999998999999999999999999887 56899999999999999999865443333   2234567


Q ss_pred             HHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          429 LFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       429 ~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +.+.|+++||++.+.   ++.+||+||+++|++|||+++++|++++++
T Consensus       408 ~~~~~~~~Gvl~~~~---~~~~~l~Ppl~it~~~id~~~~~l~~al~~  452 (466)
T PRK07036        408 IDRHCQERGLLVRPL---EHLCVLSPPLIITRAQIDEIVAILRAAIEE  452 (466)
T ss_pred             HHHHHHHCCcEEeec---CCEEEEeCCCcCCHHHHHHHHHHHHHHHHH
Confidence            888999999999864   378999999999999999999999998864

>PRK06105 aminotransferase; Provisional

Probab=100.00  E-value=6.1e-73  Score=580.06  Aligned_cols=414  Identities=29%  Similarity=0.462  Sum_probs=351.1

Q ss_pred             HHHHHHHhhhcCCCccc--cc--cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccc-
Q 011777           58 DQVFQKRKQFLGPSIFH--YY--QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT-  132 (477)
Q Consensus        58 ~~~~~~~~~~~~~~~~~--~~--~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~-  132 (477)
                      .+++++..++.+.+...  .+  ..|+++++|+|+|+||.|||+||||.+|++++++||+||+|++|+.+|++++.+.. 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~   85 (460)
T PRK06105          6 NSLEARDIAYHLHPYTNARRHEEEGPLVIERGEGIYVYDDAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHT   85 (460)
T ss_pred             HHHHHhhhhhcccCCcccccccccCCceEEeeeEEEEEECCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCeec
Confidence            45666666665433221  11  35899999999999999999999999999999999999999999999999876432 


Q ss_pred             -cccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccCC
Q 011777          133 -TIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTALN  205 (477)
Q Consensus       133 -~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~  205 (477)
                       ..+.++...+|+++|++.+|.++++|+|+|||+||||+|||+||.+      ++|.+||.++++|||++.+++++++.+
T Consensus        86 ~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~  165 (460)
T PRK06105         86 FSHKSHGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLP  165 (460)
T ss_pred             ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCc
Confidence             2357888999999999999877889999999999999999999876      468899999999999999999888755


Q ss_pred             CCCCCC--CCCCeeeecCCCCcCCCCCC-C----HHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHH
Q 011777          206 TWKYPI--PQGEIHHVVNPDPYHGSFGS-D----AARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVY  278 (477)
Q Consensus       206 ~~~~~~--~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~  278 (477)
                      .++..+  ..+++.+++.|+.+++.... .    ...+.+++++++...+++++++||+||+|+++|+++++++||++|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr  245 (460)
T PRK06105        166 NNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQ  245 (460)
T ss_pred             ccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHH
Confidence            443322  23567788888766643211 1    1224678888886444578999999999999999999999999999


Q ss_pred             HHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhccc-------ccccC
Q 011777          279 DIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK-------IQFNT  350 (477)
Q Consensus       279 ~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~-------~~~~t  350 (477)
                      ++|++||+++|+|||||||||+| ++|+++++++.|||+|+||+++|| +|+|++++++++++.+...       .|++|
T Consensus       246 ~lc~~~~~llI~DEv~tG~GRtG-~~f~~~~~~v~PDi~~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T  324 (460)
T PRK06105        246 AVLRKYDILLVADEVICGFGRTG-NMFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFT  324 (460)
T ss_pred             HHHHHcCCeEEEeccccCCCcCc-hhhhHHhcCCCCCeeeeecccccCcccceEEEEcHHHHHHHhcccccCcccccCCC
Confidence            99999999999999999999999 799999999999999999999998 6999999999999887531       37889


Q ss_pred             CCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCcc---HHHHH
Q 011777          351 FGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA---KAETA  427 (477)
Q Consensus       351 ~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~---~~~~~  427 (477)
                      |++||++|++++++|++++++++++++++++++|+++|+++ .+++.+.++||.|+|+++++..+...+.+.   .....
T Consensus       325 ~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~  403 (460)
T PRK06105        325 ASGHPVAAAVALENLAIIEERDLVGNAAERGARLQARLRAL-ADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGA  403 (460)
T ss_pred             CCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh-hcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHH
Confidence            99999999999999999999999999999999999999999 789999999999999999997654333331   22346


Q ss_pred             HHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          428 VLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       428 ~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .+.+.++++||++.+.   ++++||+||+++|++|||+++++|++++++
T Consensus       404 ~i~~~~~~~Gvl~~~~---g~~i~l~Ppl~it~~eid~~~~~l~~~l~~  449 (460)
T PRK06105        404 RANAAAHEHGVISRAM---GDTLAFCPPLIITAAQVDEMVDRFGRALDD  449 (460)
T ss_pred             HHHHHHHHCCeEEEec---CCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence            7888999999999874   479999999999999999999999999865

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=3e-73  Score=580.31  Aligned_cols=397  Identities=30%  Similarity=0.479  Sum_probs=342.5

Q ss_pred             HHHHHHHhhhcCCCccc-------cccCceeEEeeec-cEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc
Q 011777           58 DQVFQKRKQFLGPSIFH-------YYQKPLNIVEGKM-QYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ  129 (477)
Q Consensus        58 ~~~~~~~~~~~~~~~~~-------~~~~p~~~~~g~G-~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~  129 (477)
                      .+.++++++++.+.+..       ....|+++++|+| +||||.|||+||||.+|+++.++||+||+|++|+.+|++++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~  115 (459)
T PRK11522         36 REVIEYFKEHVNPGFLEYRKSVTAGGDYGAVEWQAGGLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQP  115 (459)
T ss_pred             HHHHHHHHhhcCHHHHHhhhcccccCCCCeeEEeccCeEEEEECCCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCc
Confidence            45667777777554211       1134679999999 999999999999999999999999999999999999999877


Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccC---CceEEEEccCccCCcccccccccCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTG---NLGMIALRNAYHGGSSGTIGLTALNT  206 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~---~~~ii~~~~~yhG~~~~~~~~~~~~~  206 (477)
                      +.+..+.++...+|+++|++.+|.+.++++|+||||||||.|+|+||.+++   |.+||.++++|||++.++++.++...
T Consensus       116 ~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~  195 (459)
T PRK11522        116 LHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKST  195 (459)
T ss_pred             ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcc
Confidence            655556688899999999999988788999999999999999999999985   67899999999999999999987655


Q ss_pred             CCCCCCC--CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc--cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHH
Q 011777          207 WKYPIPQ--GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF--GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVR  282 (477)
Q Consensus       207 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~--~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~  282 (477)
                      ++.++.+  +++.+++        +++     .++++++++.  .+++++++||+||+++++|+++||++||++|+++|+
T Consensus       196 ~~~~~~~~~~~~~~~~--------~~d-----~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~  262 (459)
T PRK11522        196 FRKPFMPLLPGFRHVP--------FGN-----IEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCD  262 (459)
T ss_pred             cccCCCCCCCCCcccC--------CCC-----HHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHH
Confidence            5433221  2333333        222     3567766652  234679999999999999999999999999999999


Q ss_pred             HhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhc--ccccccCCCCcHHHHH
Q 011777          283 KAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMA--QKIQFNTFGGNPVCSA  359 (477)
Q Consensus       283 ~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~--~~~~~~t~~~~~~~~a  359 (477)
                      +||+++|+||||+||||+| ++|+++++|+.||++||||++||| +|+|++++++++++.+.  ...+++||++||++|+
T Consensus       263 ~~g~llI~DEV~tG~GRtG-~~~a~e~~gv~PDivt~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~~~A  341 (459)
T PRK11522        263 EFGALLILDEVQTGMGRTG-KMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACA  341 (459)
T ss_pred             HcCCEEEeccceecCCccc-hhhhhhccCCCCCEEEechhhhCCCccceeEEEcHHHHHHhccCCcccCCCCCCCHHHHH
Confidence            9999999999999999999 799999999999999999999999 69999999999998774  3368899999999999


Q ss_pred             HHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCC-CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCc
Q 011777          360 GGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHD-IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGV  438 (477)
Q Consensus       360 aa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~-~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv  438 (477)
                      +++++|++++++++.+++++++++|+++|+++..+++ .+.++||.|+|+++++..+        .....+.+.|+++||
T Consensus       342 aala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~Gl~~giel~~~--------~~~~~i~~~l~~~Gv  413 (459)
T PRK11522        342 AALATINVLLEQNLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDN--------EIGYNFASEMFRQRV  413 (459)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEeceeEEEEEecCc--------hHHHHHHHHHHHCCe
Confidence            9999999999999999999999999999999988897 7899999999999999642        235578899999999


Q ss_pred             eeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          439 LVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       439 ~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ++.+.+..++++||.||+++|++|||+++++|++++++
T Consensus       414 l~~~~~~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~  451 (459)
T PRK11522        414 LVAGTLNNAKTIRIEPPLTLTIEQCEQVLKAARKALAA  451 (459)
T ss_pred             EEEecCCCCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence            99876545689999999999999999999999998864

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.5e-72  Score=572.26  Aligned_cols=412  Identities=31%  Similarity=0.452  Sum_probs=354.6

Q ss_pred             HHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-ccC
Q 011777           58 DQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-IYL  136 (477)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~-~~~  136 (477)
                      ++++++...++.++...  ..|+.+++|+|+||||.|||+||||++|++++++||+||+|++|+.+|++++.+... .+.
T Consensus         4 ~~~~~~~~~~~~~~~~~--~~p~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~   81 (425)
T PRK07495          4 TSLTDRRNAAISRGVGM--TTQIYADRAENAEIWDKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCHQVVP   81 (425)
T ss_pred             HHHHHHHHhhhccccCc--CCCeeEEeeeecEEEeCCCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccCcccCccC
Confidence            45666655555443221  237999999999999999999999999999999999999999999999998766433 466


Q ss_pred             ChHHHHHHHHHHhhCCCCC-CEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccC-CCCCCCCCC-
Q 011777          137 HHAIADFAEALASKMPGNL-KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTAL-NTWKYPIPQ-  213 (477)
Q Consensus       137 ~~~~~~l~~~La~~~~~~~-~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~-~~~~~~~~~-  213 (477)
                      ++...+|+++|++.+|.+. ++|+|+||||||||.|+|+||.++||.+||.++++|||++.+++++++. ..++..+.+ 
T Consensus        82 ~~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~  161 (425)
T PRK07495         82 YENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAM  161 (425)
T ss_pred             CHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCC
Confidence            7889999999999998653 7999999999999999999999999999999999999999998887764 234333322 


Q ss_pred             -CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc-cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777          214 -GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF-GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD  291 (477)
Q Consensus       214 -~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~-~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  291 (477)
                       +++.++++|+.+++   .+...++++++++++. .+++++++||+||+++++|+++++++|+++|+++|++||+++|+|
T Consensus       162 ~~~~~~~~~~~~~~g---~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~D  238 (425)
T PRK07495        162 MPDVYHVPFPVELHG---VSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIAD  238 (425)
T ss_pred             CCCeEEecCCccccc---ccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence             46777777766543   1233456677887753 245689999999999999988999999999999999999999999


Q ss_pred             CcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchh
Q 011777          292 EVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKE  371 (477)
Q Consensus       292 Ev~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~  371 (477)
                      |||+||||+| .+|+++++++.||++||||++++|+|+|++++++++++.+....+.+||++||++|++++++|++++++
T Consensus       239 Ev~tG~gr~G-~~~a~~~~gv~pDi~tlsK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~  317 (425)
T PRK07495        239 EVQTGFARTG-KLFAMEHHEVAADLTTMAKGLAGGFPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEE  317 (425)
T ss_pred             chhhcCCcCC-CceeecccCCCCCEEeehhhhcCCccceEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999 688899999999999999999999999999999999998877778899999999999999999999988


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEE
Q 011777          372 RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFR  451 (477)
Q Consensus       372 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iR  451 (477)
                      ++.+++++++++++++|+++.++++.+.+++|.|+|+++++..+. .+.|+......+.+.++++||++.+.+..++++|
T Consensus       318 ~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~iel~~~~-~~~~~~~~~~~~~~~~~~~Gvl~~~~g~~~~~~r  396 (425)
T PRK07495        318 DLCERANQLGNRLKQRLASLRETVPEIADIRGPGFMNAVEFNDAD-SGLPSAEFANRVRLKALEKGLILLTCGVHGNVIR  396 (425)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhCCCeeeeecCceEEEEEEecCC-CCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEE
Confidence            999999999999999999999889989999999999999997543 3445444567789999999999987655579999


Q ss_pred             EeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          452 IKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       452 i~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      |.||+++|++|+|+++++|++++++
T Consensus       397 ~~Ppl~it~~~id~~~~~l~~~l~~  421 (425)
T PRK07495        397 FLAPITIQDDVFAEALDILEASILE  421 (425)
T ss_pred             EeCCCccCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999875

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.1e-72  Score=576.49  Aligned_cols=417  Identities=29%  Similarity=0.496  Sum_probs=358.9

Q ss_pred             CHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-c
Q 011777           56 SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-I  134 (477)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~-~  134 (477)
                      ++++++++.++++.+.... ...|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+... .
T Consensus         3 ~~~~~~~~~~~~~~~~~~~-~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~~~~~~   81 (445)
T PRK08593          3 KAHQLIQEDEHYFAKSGRI-KYYPLVIDHGYGATLTDVDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHYTPAY   81 (445)
T ss_pred             hHHHHHHHHHHhhcccccc-CCCCceEEeeeeCEEEeCCCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccCccccc
Confidence            4567788777776543221 2248999999999999999999999999999999999999999999999998766543 3


Q ss_pred             cCChHHHHHHHHHHhhCCCCC-CEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCC-CCCCC-
Q 011777          135 YLHHAIADFAEALASKMPGNL-KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNT-WKYPI-  211 (477)
Q Consensus       135 ~~~~~~~~l~~~La~~~~~~~-~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~-~~~~~-  211 (477)
                      +.++...+|+++|++.+|... ++|+|+|||+||||.|+|+||.+++|.+||.++++|||++.+++++++... ++..+ 
T Consensus        82 ~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~  161 (445)
T PRK08593         82 MYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYG  161 (445)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCC
Confidence            568889999999999998653 699999999999999999999999999999999999999999998886432 22222 


Q ss_pred             -CCCCeeeecCCCCcCCCCCCCH----HHHHHHHHHHHhc-cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhC
Q 011777          212 -PQGEIHHVVNPDPYHGSFGSDA----ARYAQDLQDHIDF-GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAG  285 (477)
Q Consensus       212 -~~~~~~~~~~~~~~~~~~~~~~----~~~~~~le~~i~~-~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g  285 (477)
                       ..+++.+++.|+.+++++....    ..++++++++++. ..++++++||+||+++++|+++|+++||++|+++|++||
T Consensus       162 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g  241 (445)
T PRK08593        162 PLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHG  241 (445)
T ss_pred             CCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence             2357788888888877654332    2345666666653 234689999999999999999999999999999999999


Q ss_pred             cEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHH
Q 011777          286 GVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVL  365 (477)
Q Consensus       286 illI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l  365 (477)
                      +++|+||||+||||+| .+|+++++++.||++|+||++++|+|+|++++++++++.+....+.+|+++||++|++++++|
T Consensus       242 ~llI~DEv~tg~GrtG-~~~a~~~~gv~pDi~t~gK~l~~G~p~gav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l  320 (445)
T PRK08593        242 ILFAVDDIQQGLGRTG-KWSSISHFNITPDLMSFGKSLAGGMPMSAIVGRKEIMESLEAPAHLFTTGANPVSCAAALATI  320 (445)
T ss_pred             CEEEEechhhCCCcCc-hHHHHHhcCCCCCEeeecccccCCcccEEEEEcHHHHhhhccCCCCCCCCCCHHHHHHHHHHH
Confidence            9999999999999999 788889999999999999999999999999999999998876667789999999999999999


Q ss_pred             HhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC
Q 011777          366 RVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL  445 (477)
Q Consensus       366 ~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~  445 (477)
                      +.++++++++++++++++|+++|+++.++++.+.++||.|+|+++++..+...+.++......+.+.|+++||++.+.+ 
T Consensus       321 ~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~-  399 (445)
T PRK08593        321 DMIEDESLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAVA-  399 (445)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEeccC-
Confidence            9999889999999999999999999998999999999999999999976543444555556788999999999997642 


Q ss_pred             CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          446 HGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       446 ~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                       ++++||.||+++|++||++++++|++++++
T Consensus       400 -~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  429 (445)
T PRK08593        400 -GNVLRFQPPLVITYEQLDTALNTIEQAFTA  429 (445)
T ss_pred             -CCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence             589999999999999999999999998864

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=100.00  E-value=3.5e-73  Score=580.63  Aligned_cols=397  Identities=28%  Similarity=0.450  Sum_probs=340.7

Q ss_pred             CceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-ccCChHHHHHHHHHHhhCCCC--
Q 011777           78 KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-IYLHHAIADFAEALASKMPGN--  154 (477)
Q Consensus        78 ~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~-~~~~~~~~~l~~~La~~~~~~--  154 (477)
                      .|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+... .+.++...+|+++|++++|..  
T Consensus        21 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~  100 (442)
T TIGR00709        21 LPTAFAKAQGCWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNIIPKRKM  100 (442)
T ss_pred             CCceEEeccccEEEeCCCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCcCC
Confidence            58999999999999999999999999999999999999999999999998654433 356788999999999999753  


Q ss_pred             -CCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCC--CCCCeeeecCCCCcCCCCCC
Q 011777          155 -LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI--PQGEIHHVVNPDPYHGSFGS  231 (477)
Q Consensus       155 -~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  231 (477)
                       ...++|+||||||||.|||+||.+|+|.+||+++++|||++.+++++++...++...  ..+++..++.|+.++++++.
T Consensus       101 ~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (442)
T TIGR00709       101 DYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGI  180 (442)
T ss_pred             CccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccC
Confidence             345667799999999999999999999999999999999999999998754333222  12567778888888887764


Q ss_pred             CHHH----HHHHHHHHHhc--cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCc
Q 011777          232 DAAR----YAQDLQDHIDF--GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW  305 (477)
Q Consensus       232 ~~~~----~~~~le~~i~~--~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~  305 (477)
                      +.+.    +.+.+++.+..  ...+++++||+||++|++|+++++++||++|+++|++||+++|+||||+||||+| ++|
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG-~~~  259 (442)
T TIGR00709       181 GGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSG-TMF  259 (442)
T ss_pred             CchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCC-chh
Confidence            3222    22334444431  1236799999999999999999999999999999999999999999999999999 799


Q ss_pred             cccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 011777          306 GFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLL  385 (477)
Q Consensus       306 ~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~  385 (477)
                      +++++++.||++|+||++++|+|+|+++++++ ++.+....+++||++||++|+|++++|+.++++++.+++++++++|+
T Consensus       260 a~~~~gv~PDiv~~gK~l~~G~Pigav~~~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~g~~l~  338 (442)
T TIGR00709       260 AFEHAGIEPDFVVMSKAVGGGLPLAVLLIAPE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERIT  338 (442)
T ss_pred             HHHHcCCCCcEEEEcccccCCcccEEEEEchH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998 46555556889999999999999999999988999999999999999


Q ss_pred             HHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCC------ccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCc
Q 011777          386 GRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKT------PAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFT  459 (477)
Q Consensus       386 ~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~------~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t  459 (477)
                      ++|+++.++++.+.++||.|+|+++++.++..++.      ++......+...|+++||++.+.+..++++||.||+++|
T Consensus       339 ~~L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it  418 (442)
T TIGR00709       339 SFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEVFRLLCPITID  418 (442)
T ss_pred             HHHHHHHHhCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCCCC
Confidence            99999998999999999999999999976532221      123345678889999999998766567999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 011777          460 KDDADFLVDALDYSMSK  476 (477)
Q Consensus       460 ~e~i~~~l~~l~~~l~~  476 (477)
                      ++||++++++|++++.+
T Consensus       419 ~~ei~~~~~~l~~~l~~  435 (442)
T TIGR00709       419 QEECEEGISRFKQAVEE  435 (442)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999864

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=100.00  E-value=1e-72  Score=581.40  Aligned_cols=414  Identities=26%  Similarity=0.449  Sum_probs=348.3

Q ss_pred             HHHHHHHhhhcCCCccc--c-ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-
Q 011777           58 DQVFQKRKQFLGPSIFH--Y-YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-  133 (477)
Q Consensus        58 ~~~~~~~~~~~~~~~~~--~-~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~-  133 (477)
                      ++-..+..+.+.|-...  . ...|+++++|+|+||||.|||+||||.+|+++++|||+||+|++|+.+|++++.+... 
T Consensus        48 ~~~~~~~~~~~~p~~~~~~~~~~~p~~i~~~~G~~l~D~dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~~~  127 (504)
T PLN02760         48 EENGFKGHDMLAPFTAGWQSTDLEPLVIEKSEGSYVYDINGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSF  127 (504)
T ss_pred             hhhhhccCCcccCcccccccccCCCceEEeeeeeEEEECCCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccceecc
Confidence            34445555555443221  1 2358999999999999999999999999999999999999999999999998765432 


Q ss_pred             -ccCChHHHHHHHHHHhhC-CCCCCEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccCC
Q 011777          134 -IYLHHAIADFAEALASKM-PGNLKVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTALN  205 (477)
Q Consensus       134 -~~~~~~~~~l~~~La~~~-~~~~~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~  205 (477)
                       .+.++...+|+++|.+.+ +.++++++|+|||+|||+.|||+||.|      ++|.+||+++++|||++.+++++++.+
T Consensus       128 ~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~  207 (504)
T PLN02760        128 WNRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLP  207 (504)
T ss_pred             cccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCCh
Confidence             356788999999999985 455679999999999999999999976      357899999999999999999888765


Q ss_pred             CCCCC--CCCCCeeeecCCCCcCCCCCC-CH----HHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHH
Q 011777          206 TWKYP--IPQGEIHHVVNPDPYHGSFGS-DA----ARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVY  278 (477)
Q Consensus       206 ~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~  278 (477)
                      .++..  .+..++.+++.|+.+++++.. +.    ..+.+++++++...+++++++||+||+++++|+++|+++||++|+
T Consensus       208 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr  287 (504)
T PLN02760        208 ALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQ  287 (504)
T ss_pred             hhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHH
Confidence            44322  223567788888777654322 11    224567888775444568999999999999999999999999999


Q ss_pred             HHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcc-------cccccC
Q 011777          279 DIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQ-------KIQFNT  350 (477)
Q Consensus       279 ~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~-------~~~~~t  350 (477)
                      ++|++||++||+|||||||||+| .+|+++++|+.|||+||||+++|| +|+|++++++++++.+..       ..|++|
T Consensus       288 ~lc~~~g~lLI~DEV~TGfGRtG-~~~a~e~~gv~PDivtlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T  366 (504)
T PLN02760        288 AVLKKYDILFIADEVICAFGRLG-TMFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFT  366 (504)
T ss_pred             HHHHHcCCEEEecchhhCCcccc-hhhHHHhcCCCCcEEEecccccCCccccceEeecHHHHhhhhcccccccCcccCCC
Confidence            99999999999999999999999 799999999999999999999999 599999999999998753       257899


Q ss_pred             CCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCcc---HHHHH
Q 011777          351 FGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA---KAETA  427 (477)
Q Consensus       351 ~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~---~~~~~  427 (477)
                      |++||++|++++++|++++++++++++++++++|+++|+++ .+++++.++||.|+|+++++.++...+++.   .....
T Consensus       367 ~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~  445 (504)
T PLN02760        367 YSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIKAF-SGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGA  445 (504)
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-hcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHH
Confidence            99999999999999999999999999999999999999998 678999999999999999997654433332   22356


Q ss_pred             HHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          428 VLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       428 ~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .+.+.|+++||++.+.   ++.+||+||+++|++|||+++++|++++++
T Consensus       446 ~i~~~~~~~Gvl~~~~---g~~lrl~Ppl~it~eeid~~~~~l~~al~~  491 (504)
T PLN02760        446 YFGAECKKRGMLVRVA---GDNIMMSPPLIITPEEVDELISIYGKALKA  491 (504)
T ss_pred             HHHHHHHhCCcEEEec---CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            7889999999999864   468999999999999999999999999864

>PRK06917 hypothetical protein; Provisional

Probab=100.00  E-value=1.8e-72  Score=574.55  Aligned_cols=395  Identities=32%  Similarity=0.513  Sum_probs=342.1

Q ss_pred             eEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-ccCChHHHHHHHHHHhhCCCCCCEEE
Q 011777           81 NIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-IYLHHAIADFAEALASKMPGNLKVVY  159 (477)
Q Consensus        81 ~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~-~~~~~~~~~l~~~La~~~~~~~~~v~  159 (477)
                      ++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|++++.+... .+.++...+|+++|++.+|...++++
T Consensus        16 ~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~   95 (447)
T PRK06917         16 VISHGKGVYLYDQNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSPGDLNWSF   95 (447)
T ss_pred             eEEeeeeeEEEeCCCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCCCCEEE
Confidence            58999999999999999999999999999999999999999999998755432 35688899999999999987778999


Q ss_pred             EeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccCCCCCCCCC--CCCeeeecCCCCcCCCCCC
Q 011777          160 FVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP--QGEIHHVVNPDPYHGSFGS  231 (477)
Q Consensus       160 ~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  231 (477)
                      |++|||||+|.|+|+||.+      ++|.+||.|+++|||++.+++++++...++..+.  ..++..++.|..++++++.
T Consensus        96 f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  175 (447)
T PRK06917         96 FVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQK  175 (447)
T ss_pred             EeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCC
Confidence            9999999999999999765      6789999999999999999999877544433222  1356666777777776654


Q ss_pred             CHH----HHHHHHHHHHhccCCCCeeEEEecccCCC-CCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc
Q 011777          232 DAA----RYAQDLQDHIDFGTSGKVAGFIAETIQGV-GGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG  306 (477)
Q Consensus       232 ~~~----~~~~~le~~i~~~~~~~~a~vi~epi~~~-~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~  306 (477)
                      +..    .+++.++++++....+++|+||+||++++ +|+++|+++||++|+++|++||+++|+|||++||||+| .+|+
T Consensus       176 ~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG-~~~a  254 (447)
T PRK06917        176 VYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTG-AMFA  254 (447)
T ss_pred             ChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCccc-chhh
Confidence            422    24567788887444468999999999985 67899999999999999999999999999999999999 7999


Q ss_pred             ccccCCCcceeeecccccCcc-ceEEEEeCHHHHHhhccc----ccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHH
Q 011777          307 FETQGVIPDIVTMAKGIGNGL-PLGAVVTTPEIANVMAQK----IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVG  381 (477)
Q Consensus       307 ~~~~gv~pDivt~sK~lg~G~-pig~v~~~~~~~~~~~~~----~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~  381 (477)
                      ++++++.||++|+||+++||+ |+|++++++++++.+...    .+++||++||++|++++++|++++++++++++++++
T Consensus       255 ~~~~gv~PDi~~~gK~l~~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g  334 (447)
T PRK06917        255 MEHWGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNLPEKAAEKG  334 (447)
T ss_pred             HHhcCCCCCEEEeeehhccCCcceEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            999999999999999999996 999999999999987532    467899999999999999999998889999999999


Q ss_pred             HHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCcc---HHHHHHHHHHHHHcCceeeccC-----CCCCEEEEe
Q 011777          382 SHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA---KAETAVLFEKLRELGVLVGKGG-----LHGNVFRIK  453 (477)
Q Consensus       382 ~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~---~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~iRi~  453 (477)
                      ++|+++|+++.++++.+.++||.|+|++++++.+...+++.   ......+.+.|+++||++.+.+     ..++.+||+
T Consensus       335 ~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~l~  414 (447)
T PRK06917        335 EYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIA  414 (447)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEecccccCCCCCCEEEEE
Confidence            99999999999889999999999999999998654433332   2346778899999999998752     246899999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHhh
Q 011777          454 PPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       454 p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ||+++|++|||+++++|++++++
T Consensus       415 Ppl~it~~eid~~~~~l~~~l~~  437 (447)
T PRK06917        415 PPMTITYSELDELLSIFAKSVEE  437 (447)
T ss_pred             CCCcCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999865

>PRK06541 hypothetical protein; Provisional

Probab=100.00  E-value=3.4e-72  Score=574.00  Aligned_cols=419  Identities=31%  Similarity=0.499  Sum_probs=356.8

Q ss_pred             CHHHHHHHHhhhcCCCccc---ccc-CceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccc
Q 011777           56 SADQVFQKRKQFLGPSIFH---YYQ-KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA  131 (477)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~---~~~-~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~  131 (477)
                      ++.++.++.+++++.....   +.. .|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~~   87 (460)
T PRK06541          8 SDTDLQALAKRHLWMHFTRHGAYIDAPVPVIVRGEGCYIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFF   87 (460)
T ss_pred             cHHHHHHHhhcccccCccCccccccCCCceEEeCcccEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcCc
Confidence            5667777777777644322   222 378899999999999999999999999999999999999999999999987664


Q ss_pred             cc-ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc---c---CCceEEEEccCccCCcccccccccC
Q 011777          132 TT-IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS---T---GNLGMIALRNAYHGGSSGTIGLTAL  204 (477)
Q Consensus       132 ~~-~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~---~---~~~~ii~~~~~yhG~~~~~~~~~~~  204 (477)
                      .. .+.++...+++++|++..|.+.++|+|++|||||+|.|+|+||.+   +   +|.+||.++++|||++.+++++++.
T Consensus        88 ~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~  167 (460)
T PRK06541         88 PLWSYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGL  167 (460)
T ss_pred             cccccCCHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCC
Confidence            43 467888999999999999877889999999999999999999988   3   4789999999999999999999876


Q ss_pred             CCCCCCCC--CCCeeeecCCCCcCCC-CCCCHH----HHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHH
Q 011777          205 NTWKYPIP--QGEIHHVVNPDPYHGS-FGSDAA----RYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLV  277 (477)
Q Consensus       205 ~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~----~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l  277 (477)
                      +.++..+.  .+++.+++.|+.++++ ++++..    .+++.++++++..+++++++||+||+++++|+++++++||++|
T Consensus       168 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l  247 (460)
T PRK06541        168 PAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERV  247 (460)
T ss_pred             hhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHH
Confidence            54443222  3578888888888776 554432    2457788888644457899999999999999999999999999


Q ss_pred             HHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCcc-ceEEEEeCHHHHHhhccc----ccccCCC
Q 011777          278 YDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGL-PLGAVVTTPEIANVMAQK----IQFNTFG  352 (477)
Q Consensus       278 ~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~-pig~v~~~~~~~~~~~~~----~~~~t~~  352 (477)
                      +++|++||+++|+||||+||||+| .+|+++++|+.||++||||++++|+ |+|++++++++++.+...    .+++||+
T Consensus       248 ~~lc~~~g~llI~DEV~tGfGR~G-~~~a~~~~gv~PDivt~gK~l~~G~~pigav~~~~~i~~~~~~~~~~~~~~~T~~  326 (460)
T PRK06541        248 REICDRYDVLLVSDEVICAFGRLG-EMFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFG  326 (460)
T ss_pred             HHHHHHcCCEEEEechhhCCCcCc-hhhhhhhcCCCCCEEEecccccCCccceeEEEEcHHHHHHhhcCCCccccCCCCC
Confidence            999999999999999999999999 7889999999999999999999996 999999999999887532    3678999


Q ss_pred             CcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccH------HHH
Q 011777          353 GNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAK------AET  426 (477)
Q Consensus       353 ~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~------~~~  426 (477)
                      +||+++++++++|++++++++.+++++++++|+++|+++.. ++.+.+++|.|+|+++++..+..++.|..      ...
T Consensus       327 gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~-~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~  405 (460)
T PRK06541        327 GHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKLLD-LPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLR  405 (460)
T ss_pred             CCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHH
Confidence            99999999999999998889999999999999999999875 88889999999999999976543333311      112


Q ss_pred             HHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          427 AVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       427 ~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ..+.+.|+++||++.+.+...+++||+||+++|++|||+++++|++++.+
T Consensus       406 ~~~~~~l~~~Gi~~~~~~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~  455 (460)
T PRK06541        406 GFLSPALFEAGLYCRADDRGDPVVQLAPPLISGQEEFDEIEQILRSVLTE  455 (460)
T ss_pred             HHHHHHHHhCCeEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            35778999999999875333579999999999999999999999999864

>PRK12403 putative aminotransferase; Provisional

Probab=100.00  E-value=5.3e-72  Score=573.14  Aligned_cols=415  Identities=27%  Similarity=0.381  Sum_probs=346.9

Q ss_pred             HHHHHHHhhhcCCCccc--cc--cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc
Q 011777           58 DQVFQKRKQFLGPSIFH--YY--QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT  133 (477)
Q Consensus        58 ~~~~~~~~~~~~~~~~~--~~--~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~  133 (477)
                      +++.++..++.+.....  .+  ..|+++++|+|+||||.|||+||||.+|+++++|||+||+|++|+++|++++.+...
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~~~~   91 (460)
T PRK12403         12 RDYQAADAAHHIHAFLDQKALNAEGPRVMVRGEGLHLWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNM   91 (460)
T ss_pred             HHHHHhhhcccccccccccccccCCCceEEeceeeEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCCeec
Confidence            55666555554332221  11  248999999999999999999999999999999999999999999999998765443


Q ss_pred             c--cCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhcc---C---CceEEEEccCccCCcccccccccCC
Q 011777          134 I--YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLST---G---NLGMIALRNAYHGGSSGTIGLTALN  205 (477)
Q Consensus       134 ~--~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~---~---~~~ii~~~~~yhG~~~~~~~~~~~~  205 (477)
                      .  +.++...+|+++|++.+|.+.++++|++||+|||++|||+||.++   +   +..|+.+.++|||++.+++++++..
T Consensus        92 ~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~  171 (460)
T PRK12403         92 FFHTTHPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMK  171 (460)
T ss_pred             ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCc
Confidence            2  457889999999999998777899999999999999999999873   4   4568889999999999999988755


Q ss_pred             CCCCCCC-CCCeeeecCCCCcCCCCCCCHH----HHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHH
Q 011777          206 TWKYPIP-QGEIHHVVNPDPYHGSFGSDAA----RYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDI  280 (477)
Q Consensus       206 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l  280 (477)
                      .++...+ .+++.+++.|+.++++.+....    .+++++++.+...+++++++||+||++|++|++.++++||++|+++
T Consensus       172 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~l  251 (460)
T PRK12403        172 FMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRI  251 (460)
T ss_pred             cccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHH
Confidence            4332211 2567788888877765543222    2346676666434457899999999999999999999999999999


Q ss_pred             HHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCcc-ceEEEEeCHHHHHhhcc----cccccCCCCcH
Q 011777          281 VRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGL-PLGAVVTTPEIANVMAQ----KIQFNTFGGNP  355 (477)
Q Consensus       281 ~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~-pig~v~~~~~~~~~~~~----~~~~~t~~~~~  355 (477)
                      |++||++||+||||+||||+| ++|+++++|+.||++|+||+++||+ |+|++++++++++.+..    ..|++||++||
T Consensus       252 c~~~g~lLI~DEV~tGfGRtG-~~~a~e~~gv~PDiv~~gK~lggG~~Piga~v~~~~i~~~~~~~~~~~~~~~T~~gnP  330 (460)
T PRK12403        252 CRQYDVLLCADEVIGGFGRTG-EWFAHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHP  330 (460)
T ss_pred             HHHcCCEEEEeccccCCCcCc-hhhhhhhcCCCCCeEEEcccccccccceEEEEECHHHHHHHhcCCCccccCCCCCCCH
Confidence            999999999999999999999 7999999999999999999999995 99999999999988743    23788999999


Q ss_pred             HHHHHHHHHHHhhchhhHHHHHH-HHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccH---HHHHHHHH
Q 011777          356 VCSAGGLAVLRVIDKERRQAHCA-DVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAK---AETAVLFE  431 (477)
Q Consensus       356 ~~~aaa~a~l~~l~~~~~~~~~~-~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~---~~~~~~~~  431 (477)
                      ++|++++++|+++++++++++++ +++++++++|+++..+++.+.++||.|+|++++++.+...+.+..   .....+.+
T Consensus       331 l~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~  410 (460)
T PRK12403        331 VAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRT  410 (460)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCEEeEeecceEEEEEEccCccccccccchhHHHHHHHH
Confidence            99999999999999889999996 999999999999998999999999999999999976543333321   22345677


Q ss_pred             HHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          432 KLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       432 ~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .++++||++.+.   ++.+||+||+++|++|||+++++|++++++
T Consensus       411 ~~~~~Gll~~~~---~~~~~l~Ppl~it~~eid~~~~~l~~al~~  452 (460)
T PRK12403        411 IGFEEGVIIRST---LGRMIMAPALVAGRAEIDELVDKTRIAVDR  452 (460)
T ss_pred             HHHhCCEEEEec---CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            889999999754   357899999999999999999999999865

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=100.00  E-value=7.9e-72  Score=573.04  Aligned_cols=423  Identities=29%  Similarity=0.489  Sum_probs=364.7

Q ss_pred             CCCCCCHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc
Q 011777           51 PYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH  130 (477)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~  130 (477)
                      .++.|++.+++++..++++.+...  ..|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+
T Consensus        11 ~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~   88 (451)
T PRK06918         11 QIPGPKAASLLERRQNIVPKGVSN--GIPTFAQSANGALVTDVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIH   88 (451)
T ss_pred             cCCCCCHHHHHHHHHHhhcccccc--CCCceEEeccccEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccC
Confidence            466789999999998887655322  237899999999999999999999999999999999999999999999998766


Q ss_pred             ccc-ccCChHHHHHHHHHHhhCCCCC-CEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccC-CCC
Q 011777          131 ATT-IYLHHAIADFAEALASKMPGNL-KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTAL-NTW  207 (477)
Q Consensus       131 ~~~-~~~~~~~~~l~~~La~~~~~~~-~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~-~~~  207 (477)
                      ... .+.++...+|+++|++.+|... ++|+|+||||||||+|||+||.+++|.+||+++++|||++.+++++++. ..+
T Consensus        89 ~~~~~~~~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~  168 (451)
T PRK06918         89 TGFNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPY  168 (451)
T ss_pred             ccccccccHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccc
Confidence            533 3568889999999999998655 5999999999999999999999999999999999999999999988764 223


Q ss_pred             CCCCC--CCCeeeecCCCCcCCCCCCCHH----HHHHHHHHHHh-ccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHH
Q 011777          208 KYPIP--QGEIHHVVNPDPYHGSFGSDAA----RYAQDLQDHID-FGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDI  280 (477)
Q Consensus       208 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~le~~i~-~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l  280 (477)
                      +..+.  .+++.+++.|+.++++.+....    .+++.+++++. ..+++++++||+||+|+++|.++++++|+++|+++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l  248 (451)
T PRK06918        169 KFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNI  248 (451)
T ss_pred             cccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHH
Confidence            32222  2467777888777665543221    12345666553 22457899999999999999999999999999999


Q ss_pred             HHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHH
Q 011777          281 VRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAG  360 (477)
Q Consensus       281 ~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aa  360 (477)
                      |++||++||+||||+||||+| .+++++++++.||+++|||++++|+|+||+++++++++.+....+.+||++||++|++
T Consensus       249 ~~~~gillI~DEV~tg~gr~g-~~~a~~~~~v~pDi~t~sK~l~~G~pig~v~~~~~i~~~~~~~~~~~T~~g~~l~~aa  327 (451)
T PRK06918        249 CSEHGILFVADEIQTGFARTG-KYFAIEHFDVVPDLITVSKSLGAGVPISGVIGRKEIMDESAPGELGGTYAGSPLGCAA  327 (451)
T ss_pred             HHHcCCEEEEeccccCcCccC-ceehhHhcCCCCCEEeeehhhcCCCccEEEEEcHHHHhccCCCCcCcCCCcCHHHHHH
Confidence            999999999999999999999 6888899999999999999999999999999999999988777788999999999999


Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCcee
Q 011777          361 GLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLV  440 (477)
Q Consensus       361 a~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v  440 (477)
                      +.++|+.++++++.+++++++++++++|+++.++++.+.++++.|+|+++++..+...+.|+......+.+.|+++||++
T Consensus       328 a~a~l~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv  407 (451)
T PRK06918        328 ALAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYNCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLL  407 (451)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhCCCceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEE
Confidence            99999999888999999999999999999998888888999999999999997544344455556778889999999999


Q ss_pred             eccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          441 GKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       441 ~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .+++.+++++||+||+++++++|++++++|++++++
T Consensus       408 ~~~~~~~~~lrl~p~l~~t~~~id~~l~~l~~~l~~  443 (451)
T PRK06918        408 LSAGTYGNVIRVLMPLVITDEQLEEGLTIIEESLQA  443 (451)
T ss_pred             eecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence            987766799999999999999999999999999864

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=7.5e-73  Score=518.04  Aligned_cols=394  Identities=30%  Similarity=0.516  Sum_probs=344.5

Q ss_pred             CCCHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc
Q 011777           54 GPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT  133 (477)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~  133 (477)
                      +-.+++.+++..++-..   ++.+.|+++++++|+++||++|++|+||.+++++++-|||||.|++++++|.+++..++.
T Consensus        20 ~~aS~~~~~~E~k~~ah---nyhpLpvvf~ka~g~~vwD~eGk~ylDflsaysaVnqGhchpki~~aLqeq~~kLtlssr   96 (427)
T KOG1402|consen   20 TTASQQIMERENKYGAH---NYHPLPVVFSKAKGSRVWDPEGKEYLDFLSAYSAVNQGHCHPKIIKALQEQADKLTLSSR   96 (427)
T ss_pred             ccchhhhhchhhhcccc---cCCcCceEEEecCCcEEECCCccchhhhhhhhhhcccCCCCHHHHHHHHHHHhHhhhhhH
Confidence            33456677777776543   356779999999999999999999999999999999999999999999999999877666


Q ss_pred             ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhcc--------CCceEEEEccCccCCcccccccccCC
Q 011777          134 IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLST--------GNLGMIALRNAYHGGSSGTIGLTALN  205 (477)
Q Consensus       134 ~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~--------~~~~ii~~~~~yhG~~~~~~~~~~~~  205 (477)
                      .+.+....++++.++++++  .+.|+-+|+|.||+|.|+|+||.+.        .+.+|++..++|||++.++++++..+
T Consensus        97 afYnd~~~~f~~~vt~lf~--~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~  174 (427)
T KOG1402|consen   97 AFYNDVLGEFAEYVTKLFG--YDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDP  174 (427)
T ss_pred             HHhhhhHHHHHHHHHHhcC--cceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCc
Confidence            6778889999999999995  5789999999999999999999642        23468889999999999999998765


Q ss_pred             -CCC-CCCCCCC-eeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHH
Q 011777          206 -TWK-YPIPQGE-IHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVR  282 (477)
Q Consensus       206 -~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~  282 (477)
                       .|. +....++ +..++        +++     +++|+.+++   .+.+++||+|||||++|+++||++||+++++||+
T Consensus       175 ds~~~fgp~~P~~~~~v~--------Y~d-----~eale~~l~---~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCt  238 (427)
T KOG1402|consen  175 DSWDGFGPFLPGVVDKVP--------YGD-----AEALEVALK---SPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCT  238 (427)
T ss_pred             chhhccCCCCCCcceeec--------cCC-----HHHHHHHhc---CCCeeEEEeeccccccceEeCCchhHHHHHHHHH
Confidence             222 1111234 44443        332     688999887   4789999999999999999999999999999999


Q ss_pred             HhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHH
Q 011777          283 KAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGG  361 (477)
Q Consensus       283 ~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa  361 (477)
                      +|++++|.||||||++||| ++|++++..+.||++.|+|+++|| +|++++++++++|..+.+..|++||++||++++++
T Consensus       239 kynvl~I~DEvQTGl~RTG-k~la~d~env~PDivilgKalSGG~~Pvsavl~~~~im~~~~pgeHgsTyggNpLg~~va  317 (427)
T KOG1402|consen  239 KYNVLLIADEVQTGLARTG-KLLACDYENVRPDIVILGKALSGGVYPVSAVLADDDIMLNIKPGEHGSTYGGNPLGCAVA  317 (427)
T ss_pred             hhcEEEEehhhhhcccccC-cEEEeehhhcCCCeEEEeccccCCeeeeEEEEecHHHHhccCCCccccccCCChHHHHHH
Confidence            9999999999999999999 899999999999999999999999 79999999999999999999999999999999999


Q ss_pred             HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCC-CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCcee
Q 011777          362 LAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHD-IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLV  440 (477)
Q Consensus       362 ~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~-~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v  440 (477)
                      .|+|+++.++++.++.+.+|..++.+|+++..+.| ++..+||+|++.++++...+.    ...++..++-.|+++|++.
T Consensus       318 iAalevi~eekL~era~~lG~~l~~~L~~l~~~~p~~v~~VRGrGl~~ai~i~~~~~----~~~~aw~~cl~lk~~g~LA  393 (427)
T KOG1402|consen  318 IAALEVIVEEKLVERAAKLGEILRDQLNKLQKKFPHVVKEVRGRGLLNAIVINPSKT----SGQDAWDVCLALKENGLLA  393 (427)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhheeeccceEEEEEeccccc----cchhHHHHHHccccccccc
Confidence            99999999999999999999999999999988875 578999999999999964321    2234567888899999998


Q ss_pred             eccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          441 GKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       441 ~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      .|.  +++.|||.||++++++|+++.++++++++.
T Consensus       394 kpt--H~~IiRfaPPL~I~e~dl~eg~e~i~k~i~  426 (427)
T KOG1402|consen  394 KPT--HGNIIRFAPPLVISEEDLREGIEAIEKTIA  426 (427)
T ss_pred             CCC--CCCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence            874  588999999999999999999999998864

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.1e-71  Score=568.34  Aligned_cols=417  Identities=36%  Similarity=0.562  Sum_probs=358.9

Q ss_pred             CCCCCCHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc
Q 011777           51 PYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH  130 (477)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~  130 (477)
                      ..+.|++++++++.++++++...  ...|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+
T Consensus        11 ~~~~~~s~~l~~~~~~~~~~~~~--~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~   88 (441)
T PRK05769         11 ELPGPKAREIIERDEKYLAQSTR--RWYPLVIERGEGVWVEDVDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLH   88 (441)
T ss_pred             cCCCccHHHHHHHHHHhhCcccc--cCCCeeEEecceEEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccC
Confidence            36678899998887777765422  2358999999999999999999999999999999999999999999999998766


Q ss_pred             ccc-ccCChHHHHHHHHHHhhCCCC-CCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCC-CC
Q 011777          131 ATT-IYLHHAIADFAEALASKMPGN-LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALN-TW  207 (477)
Q Consensus       131 ~~~-~~~~~~~~~l~~~La~~~~~~-~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~  207 (477)
                      ... .+.++...+|+++|++.+|.+ .++|+|+||||||||.|+|+||.+++|.+||.++++|||++.++++.++.. .+
T Consensus        89 ~~~~~~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~  168 (441)
T PRK05769         89 YSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQ  168 (441)
T ss_pred             ccCcccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCccc
Confidence            443 356888999999999999753 579999999999999999999999999999999999999999999887532 22


Q ss_pred             CCCC--CCCCeeeecCCCCcCCCCC-CCHH----HHHHHHHH-HHhc-cCCCCeeEEEecccCCCCCeeeCCchhHHHHH
Q 011777          208 KYPI--PQGEIHHVVNPDPYHGSFG-SDAA----RYAQDLQD-HIDF-GTSGKVAGFIAETIQGVGGAVELAPGYLKLVY  278 (477)
Q Consensus       208 ~~~~--~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~le~-~i~~-~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~  278 (477)
                      +..+  ..+++.+++.|+.++++++ .+..    .+++.+++ +++. .+++++++||+||+++++|+++|+++||++|+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~  248 (441)
T PRK05769        169 RKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELR  248 (441)
T ss_pred             ccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHH
Confidence            2222  1257888888888888876 3322    24555777 3332 23578999999999999999999999999999


Q ss_pred             HHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHH
Q 011777          279 DIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCS  358 (477)
Q Consensus       279 ~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~  358 (477)
                      ++|++||+++|+||||+||||+| .+|+++++++.||+++|||++++|+|+|++++++++++.+ ...+++||++||++|
T Consensus       249 ~l~~~~g~lli~DEv~tG~gr~G-~~~a~~~~gv~pDivt~~K~l~~G~p~gav~~~~~i~~~~-~~~~~~T~~g~p~~~  326 (441)
T PRK05769        249 KLADKYGILLIDDEVQTGMGRTG-KMFAIEHFGVEPDIITLAKAIAGGLPLGAVIGRAELMFLP-PGSHANTFGGNPVAA  326 (441)
T ss_pred             HHHHHcCCEEEEechhhCCCccc-ceehhhccCCCCCEEEEcccccCCcccEEEEEehhhhhcC-CCCCCCCCCcCHHHH
Confidence            99999999999999999999999 7888899999999999999999999999999999998644 346889999999999


Q ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCc
Q 011777          359 AGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGV  438 (477)
Q Consensus       359 aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv  438 (477)
                      ++++++|+++++ ++++++++++++|+++|+++..+++.+.+++|.|+|+++++..+.  +.++......+.+.|+++||
T Consensus       327 aaa~a~L~~l~~-~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~Gi  403 (441)
T PRK05769        327 AAALATLEELEE-GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDR--KEPDPKLRDKVLYEAFKRGL  403 (441)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCC--ccccHHHHHHHHHHHHhCCc
Confidence            999999999988 999999999999999999998889999999999999999997543  23444456778899999999


Q ss_pred             eeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          439 LVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       439 ~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ++.+.+  .+.+||+||+++|++|||+++++|++++.+
T Consensus       404 l~~~~~--~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  439 (441)
T PRK05769        404 LLLGAG--KSAIRIIPPLIITEEEADIGLEILEEAIKE  439 (441)
T ss_pred             EEecCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            997654  478999999999999999999999999875

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=9.4e-71  Score=559.83  Aligned_cols=412  Identities=30%  Similarity=0.429  Sum_probs=352.5

Q ss_pred             HHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-cc
Q 011777           57 ADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-IY  135 (477)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~-~~  135 (477)
                      +.+++++..++++.....  ..|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|++++.+... .+
T Consensus         3 ~~~~~~~~~~~~~~~~~~--~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~   80 (421)
T PRK06777          3 NSELNQRRLEATPRGVGV--MCDFYAERAENATLWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTAYQIV   80 (421)
T ss_pred             hHHHHHHHHHhcccccCc--CCCeeEEeeecCEEEeCCCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhccccccccc
Confidence            456677766666544332  238999999999999999999999999999999999999999999999998765433 34


Q ss_pred             CChHHHHHHHHHHhhCCC-CCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCC-CCCCCCC-
Q 011777          136 LHHAIADFAEALASKMPG-NLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALN-TWKYPIP-  212 (477)
Q Consensus       136 ~~~~~~~l~~~La~~~~~-~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~~~~~-  212 (477)
                      .++...+|+++|++..|. +.++++|+||||||+|.|+|+||.+++|.+||.|+++|||++.+++++++.. .++.... 
T Consensus        81 ~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~  160 (421)
T PRK06777         81 PYASYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGP  160 (421)
T ss_pred             CChHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCC
Confidence            678889999999999874 4679999999999999999999999999999999999999999999987642 2332221 


Q ss_pred             -CCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc-cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEE
Q 011777          213 -QGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF-GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA  290 (477)
Q Consensus       213 -~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~-~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  290 (477)
                       ..++.+++.|+.+++   .....++++++++++. .+++++++||+||+++++|+.+++++||++|+++|++||+++|+
T Consensus       161 ~~~~~~~~~~p~~~~~---~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~  237 (421)
T PRK06777        161 FPGSIFHALYPNELHG---VSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIA  237 (421)
T ss_pred             CCCCcEEcCCCccccC---cCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence             245666666654432   1233446678887763 24578999999999999999999999999999999999999999


Q ss_pred             cCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch
Q 011777          291 DEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK  370 (477)
Q Consensus       291 DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~  370 (477)
                      ||||+||||+| .+|+++++++.||++|+||++++|+|+|++++++++++.+....+.+||++||++|++++++|+.+++
T Consensus       238 DEv~tg~gr~g-~~~~~~~~~~~pDiv~~sK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~  316 (421)
T PRK06777        238 DEVQTGFARTG-KLFAMEYYDVKPDLITMAKSLGGGMPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAE  316 (421)
T ss_pred             echhhCCccCC-chhhhhhcCCCCCEEeeehhhcCCCceEEEEEcHHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh
Confidence            99999999999 78888999999999999999999999999999999999888777889999999999999999999988


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEE
Q 011777          371 ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVF  450 (477)
Q Consensus       371 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~i  450 (477)
                      +++.+++++++++++++|+++..+++.+.+++|.|+|+++++..+. ...+.......+.+.++++||++.+++.+++++
T Consensus       317 ~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~g~~l  395 (421)
T PRK06777        317 EKLCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMVAVEFNDPQ-TGKPSPEFTRQYQRQALEEGLLLLSCGVHGNVI  395 (421)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCceEEEEEEEecCc-cCCccHHHHHHHHHHHHhCCeEEeecCCCCCEE
Confidence            8999999999999999999998888999999999999999986432 222344456678888999999999987778899


Q ss_pred             EEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          451 RIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       451 Ri~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      ||.||++++++++++++++|++++.
T Consensus       396 r~~ppl~i~~~~i~~~~~~l~~~l~  420 (421)
T PRK06777        396 RFLYPLTIPDAQFSKALNILTRLLA  420 (421)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999875

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.1e-70  Score=560.91  Aligned_cols=417  Identities=31%  Similarity=0.495  Sum_probs=359.0

Q ss_pred             CHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccc-
Q 011777           56 SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI-  134 (477)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~-  134 (477)
                      ++.+++++..+++.+.... ...|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+.... 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~-~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~   80 (443)
T PRK08360          2 KPLEIIERYSKVISPANRV-TYYPLVPVKAENAKVWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTPIY   80 (443)
T ss_pred             CHHHHHHHHHHhccccccc-ccCCceEEecceeEEEECCCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhccCccccc
Confidence            4567888888886654311 13489999999999999999999999999999999999999999999999987665443 


Q ss_pred             cCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCC-CCCCCCC-
Q 011777          135 YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALN-TWKYPIP-  212 (477)
Q Consensus       135 ~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~~~~~-  212 (477)
                      +.++...+|+++|++.+|...++|+|+||||||||.|||+||.+++|.+|+.+.++|||++.+++++++.. .++..+. 
T Consensus        81 ~~~~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~  160 (443)
T PRK08360         81 GFPVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGE  160 (443)
T ss_pred             cCcHHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCC
Confidence            44788899999999999877789999999999999999999999999999999999999999998887632 2222111 


Q ss_pred             CCCeeeecCCCCcCCCCCCCHH----HHHHHHHHHHhcc-CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcE
Q 011777          213 QGEIHHVVNPDPYHGSFGSDAA----RYAQDLQDHIDFG-TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGV  287 (477)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~le~~i~~~-~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gil  287 (477)
                      .+++.++++|+.++.++..+..    .+++.++++++.. +.+++++||+||+||++|.+.++++|+++|+++|++||++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~l  240 (443)
T PRK08360        161 LSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGIL  240 (443)
T ss_pred             CCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence            3567888888887766643211    2355567777532 3478999999999999999999999999999999999999


Q ss_pred             EEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHh
Q 011777          288 CIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRV  367 (477)
Q Consensus       288 lI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~  367 (477)
                      +|+||||+||||+| .+|+++++++.||++|+||++++|+|+|++++++++++.+....+.+|+++||++|++++++|+.
T Consensus       241 lI~DEv~~g~gr~G-~~~a~~~~~~~pDiitlsK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~  319 (443)
T PRK08360        241 LVVDEVQSGLGRTG-KWFAIEHFGVEPDIITLGKPLGGGLPISATIGRAEIMDSLPPLAHAFTLSGNPVASAAALAVIEE  319 (443)
T ss_pred             EEEeccccCCCcCc-cchhhhhcCCCCCEEEecccccCCceeEEEEEcHHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHH
Confidence            99999999999999 68888888999999999999999999999999999999987767889999999999999999999


Q ss_pred             hchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCC
Q 011777          368 IDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHG  447 (477)
Q Consensus       368 l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~  447 (477)
                      ++++++.+++++++++++++|+++..+++.+.+++|.|+|+++++.++..++.++...+..+.+.|+++|+++.+..  +
T Consensus       320 l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--~  397 (443)
T PRK08360        320 IEEKNLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFFS--G  397 (443)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeecC--C
Confidence            98889999999999999999999988899999999999999999986554444554556788899999999987543  6


Q ss_pred             CEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          448 NVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       448 ~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +.+||+||+++|++||++++++|++++++
T Consensus       398 ~~lr~~P~l~~t~~~id~~~~~l~~~l~~  426 (443)
T PRK08360        398 NVLRIQPPLTIEKEVLDEGLDILEEAIED  426 (443)
T ss_pred             CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999864

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.1e-70  Score=563.07  Aligned_cols=416  Identities=36%  Similarity=0.566  Sum_probs=356.8

Q ss_pred             HHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccc-ccc
Q 011777           57 ADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT-TIY  135 (477)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~-~~~  135 (477)
                      ..+++++..+++.+.....+ .|+++++++|+|+||.|||+||||.+|+++++|||+||+|++|+.+|++++.+.. ..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~   83 (433)
T PRK08117          5 WSDLVERYPQLLAPALAKDH-PNLPVVKGEGCYYYGVDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGVI   83 (433)
T ss_pred             HHHHHHHHHHHhhhhccccC-CCceEEeeeeeEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcccccc
Confidence            46777777776655432222 2489999999999999999999999999999999999999999999999876654 345


Q ss_pred             CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccC-CCCCCCC-C-
Q 011777          136 LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTAL-NTWKYPI-P-  212 (477)
Q Consensus       136 ~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~-~~~~~~~-~-  212 (477)
                      .++...+|+++|++++|...++++|+|||+|||+.|||+||.+++|.+||+++++|||++.+++++++. ..++... + 
T Consensus        84 ~~~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~  163 (433)
T PRK08117         84 YYESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPL  163 (433)
T ss_pred             CCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCC
Confidence            678899999999999977778999999999999999999999999999999999999999999887653 2222221 1 


Q ss_pred             CCCeeeecCCCCcCCCCCCCHH----HHHHHHHHHHhc-cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcE
Q 011777          213 QGEIHHVVNPDPYHGSFGSDAA----RYAQDLQDHIDF-GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGV  287 (477)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~le~~i~~-~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gil  287 (477)
                      .+++.+++.|+.++++...+..    .++++++++++. ..++++++||+||+++++|++.++++||++|+++|++||++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~l  243 (433)
T PRK08117        164 LGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGIL  243 (433)
T ss_pred             CCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence            3577888888877765543222    245677777763 23468999999999999999999999999999999999999


Q ss_pred             EEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHh
Q 011777          288 CIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRV  367 (477)
Q Consensus       288 lI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~  367 (477)
                      ||+||||+||||+| .+|+++++++.||++||||++++|+|+|++++++++++.+....+++||++||+++++++++|+.
T Consensus       244 lI~DEv~tG~gr~G-~~~~~~~~gv~pDi~t~sK~lg~G~pigav~~~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~  322 (433)
T PRK08117        244 LIFDEVQTGFGRTG-EWFAAQTFGVVPDIMTIAKGIASGLPLSAVVASKELMEQWPLGSHGTTFGGNPVACAAALATLEV  322 (433)
T ss_pred             EEEecchhccCccc-cchhHhhcCCCCCEeehhhhccCCCcceeEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHH
Confidence            99999999999999 78888889999999999999999999999999999999887667889999999999999999999


Q ss_pred             hchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCC
Q 011777          368 IDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHG  447 (477)
Q Consensus       368 l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~  447 (477)
                      ++++++++++++++++++++|.++..+++.+.++++.|+|+++++..+.  +.++......+.+.|+++||++.+.+..+
T Consensus       323 l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~--~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~  400 (433)
T PRK08117        323 IKEEKLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPD--GEPDGDAVEKILDKCLEKGLLFYLCGNAG  400 (433)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHhcCCceeeeecCCcEEEEEEecCC--CCcchHHHHHHHHHHHHCCCEEeecCCCC
Confidence            9888999999999999999999998888988999999999999997543  23444456778899999999998765556


Q ss_pred             CEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          448 NVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       448 ~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +++||+||+++|+++|++++++|++++++
T Consensus       401 ~~lRl~p~~~~t~~~i~~~~~~l~~~l~~  429 (433)
T PRK08117        401 NVLRMIPPLTVTKEEIDEGLDILDEALTE  429 (433)
T ss_pred             CEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999865

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=100.00  E-value=1.2e-70  Score=560.14  Aligned_cols=397  Identities=31%  Similarity=0.449  Sum_probs=346.5

Q ss_pred             cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-ccCChHHHHHHHHHHhhCCC-C
Q 011777           77 QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-IYLHHAIADFAEALASKMPG-N  154 (477)
Q Consensus        77 ~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~-~~~~~~~~~l~~~La~~~~~-~  154 (477)
                      +.|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+... .+.++...+++++|++.+|. +
T Consensus        14 ~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~   93 (420)
T TIGR00700        14 TLPVFAARAEGAILEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRIAPGSG   93 (420)
T ss_pred             CCCeeEEeeeeeEEEeCCCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHHhCCCCC
Confidence            458999999999999999999999999999999999999999999999998765443 25577889999999999974 4


Q ss_pred             CCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCC-CCCCCCC--CCCeeeecCCCCcCCCCCC
Q 011777          155 LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALN-TWKYPIP--QGEIHHVVNPDPYHGSFGS  231 (477)
Q Consensus       155 ~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~  231 (477)
                      .++|+|++|||||+|.|+|+||.++||.+||+++++|||++.+++++++.. .++..+.  .+++.+++.|++++.+.+.
T Consensus        94 ~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (420)
T TIGR00700        94 PKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLD  173 (420)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccc
Confidence            579999999999999999999999999999999999999999999887642 2332221  2467778888777654321


Q ss_pred             C---HHHHHHHHHHHHh-ccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc
Q 011777          232 D---AARYAQDLQDHID-FGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF  307 (477)
Q Consensus       232 ~---~~~~~~~le~~i~-~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~  307 (477)
                      .   ...+++.+++++. ..+++++|+||+||+|+++|+++++++|+++|+++|++||++||+||||+||||+| .+|++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g-~~~a~  252 (420)
T TIGR00700       174 KQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTG-AMFAC  252 (420)
T ss_pred             cchhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccc-hhHHH
Confidence            1   1223566777664 23457899999999999999999999999999999999999999999999999999 68888


Q ss_pred             cccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Q 011777          308 ETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGR  387 (477)
Q Consensus       308 ~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~  387 (477)
                      +++++.||+++|||++++|+|+|++++++++++.+....+.+||++||++|++++++|+.++++++.+++++++++++++
T Consensus       253 ~~~~~~pDi~~lsK~l~~G~pig~v~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~  332 (420)
T TIGR00700       253 EHEGPEPDLITTAKSLADGLPLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTDR  332 (420)
T ss_pred             hhcCCCCCEEEeeccccCCcceEEEEecHHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988777788999999999999999999998889999999999999999


Q ss_pred             HHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHH
Q 011777          388 LRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLV  467 (477)
Q Consensus       388 L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l  467 (477)
                      |+++.++++.+.++++.|+|+++++.++ ....|+......+.+.|+++||++.|++.+++++||+||+++++++|++++
T Consensus       333 L~~l~~~~~~~~~vrg~G~~~~i~~~~~-~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f~~~lRl~p~l~~~~~~l~~~~  411 (420)
T TIGR00700       333 LTTLKAVDPRIGDVRGLGAMIAVELVDP-GTTEPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTIGDELLSEGL  411 (420)
T ss_pred             HHHHHhhCCCEEEeeccceEEEEEEecC-CCCCccHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCCcCHHHHHHHH
Confidence            9999888888899999999999999643 223355556678888999999999998777899999999999999999999


Q ss_pred             HHHHHHHh
Q 011777          468 DALDYSMS  475 (477)
Q Consensus       468 ~~l~~~l~  475 (477)
                      ++|+++++
T Consensus       412 ~~l~~~l~  419 (420)
T TIGR00700       412 DILCAILA  419 (420)
T ss_pred             HHHHHHhh
Confidence            99999875

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06149 hypothetical protein; Provisional

Probab=100.00  E-value=1.2e-70  Score=607.76  Aligned_cols=421  Identities=42%  Similarity=0.718  Sum_probs=366.5

Q ss_pred             CCCCHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccc
Q 011777           53 TGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT  132 (477)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~  132 (477)
                      +.+++.++++++++++.+....+++.|+.+++|+|+|+||.|||+||||.+|+  .++||+||+|++|+.+|+.++.+. 
T Consensus       542 ~~~~~~~l~~~~~~~~~~~~~~~~~~p~~i~~g~G~~l~D~dG~~ylD~~~~~--~~lGh~hp~v~~Ai~~q~~~l~~~-  618 (972)
T PRK06149        542 PPPDAAALLARRDASFARVQKHYYADPPQIERGWRHHLFDMAGRSYLDMVNNV--TVLGHGHPRLAAAAARQWSLLNTN-  618 (972)
T ss_pred             CCCCHHHHHHHHHHhhccchhhcccCCCeEEEeeeeEEEeCCCCEEEECCCCc--cccCCCCHHHHHHHHHHHHhcccc-
Confidence            44678899999999887765556677899999999999999999999999886  379999999999999999987543 


Q ss_pred             cccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC---
Q 011777          133 TIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY---  209 (477)
Q Consensus       133 ~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~---  209 (477)
                      +.+.++...+|+++|++.+|.+.++++|+|||+|||+.|||+||.++||.+||+++++|||++.+++++++......   
T Consensus       619 ~~~~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~  698 (972)
T PRK06149        619 SRFHYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQAL  698 (972)
T ss_pred             ccccCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCcccccccc
Confidence            34567889999999999998778899999999999999999999999999999999999999999877754321111   


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCC--HHHHHHHHHHHHhc--cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhC
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSD--AARYAQDLQDHIDF--GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAG  285 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~le~~i~~--~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g  285 (477)
                      .....++..++.|+.++++|+.+  ...|.+++++.++.  .+.+++++||+||++|++|+++++++||++|+++|++||
T Consensus       699 ~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g  778 (972)
T PRK06149        699 ETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARG  778 (972)
T ss_pred             CCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcC
Confidence            11123667788888888888643  34566676666642  235689999999999999999999999999999999999


Q ss_pred             cEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcc-cccccCCCCcHHHHHHHHHH
Q 011777          286 GVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQ-KIQFNTFGGNPVCSAGGLAV  364 (477)
Q Consensus       286 illI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~-~~~~~t~~~~~~~~aaa~a~  364 (477)
                      +++|+|||||||||+|..+|+++++|+.|||+||||++|||+|+|++++++++++.+.. ..+++|+++||++|++++++
T Consensus       779 ~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~gK~lg~G~Pl~av~~~~~i~~~~~~~~~~~sT~~gnP~~~aaala~  858 (972)
T PRK06149        779 GVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGNGHPLGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAV  858 (972)
T ss_pred             CEEEEEeehhcCCccCccchhhhhcCCCCCEEEecccccCCeeeEEEEEcHHHHhhhccCCcccCCCCCCHHHHHHHHHH
Confidence            99999999999999994478999999999999999999999999999999999998864 34567899999999999999


Q ss_pred             HHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC
Q 011777          365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG  444 (477)
Q Consensus       365 l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~  444 (477)
                      |++++++++++++++++++|+++|+++..+++++.++||.|+|+++++..+..++.+.......+.+.|+++||++.+.+
T Consensus       859 L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g  938 (972)
T PRK06149        859 LDVLREEKLQENARRVGDHLKARLEALADRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTG  938 (972)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeecC
Confidence            99999999999999999999999999999999999999999999999986655555665667789999999999999877


Q ss_pred             CCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          445 LHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       445 ~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ...+++||.||+++|++|||+++++|++++.+
T Consensus       939 ~~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~  970 (972)
T PRK06149        939 DHLNILKIKPPLCLDRESADFFVDMLDRVLTE  970 (972)
T ss_pred             CCCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence            66799999999999999999999999999865

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=100.00  E-value=4.9e-70  Score=554.55  Aligned_cols=410  Identities=29%  Similarity=0.397  Sum_probs=349.1

Q ss_pred             HHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-ccCC
Q 011777           59 QVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-IYLH  137 (477)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~-~~~~  137 (477)
                      +++++...++.+....  ..|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+... .+.+
T Consensus         5 ~~~~~~~~~~~~~~~~--~~~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~   82 (421)
T PRK09792          5 EFHQRRLSATPRGVGV--MCNFFAQSAENATLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPY   82 (421)
T ss_pred             HHHHHHHhhccccccc--CCCeeEEeccccEEEeCCCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhccCcccCccCC
Confidence            4555544444333222  236899999999999999999999999999999999999999999999998765433 3567


Q ss_pred             hHHHHHHHHHHhhCCC-CCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCC-CCCCCCC--C
Q 011777          138 HAIADFAEALASKMPG-NLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALN-TWKYPIP--Q  213 (477)
Q Consensus       138 ~~~~~l~~~La~~~~~-~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~~~~~--~  213 (477)
                      +...+|+++|++..|. +.++++|++|||||||.|+|+||.++||.+||+++++|||++.++++.++.. .++..+.  .
T Consensus        83 ~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~  162 (421)
T PRK09792         83 ESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFP  162 (421)
T ss_pred             HHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCC
Confidence            8889999999999874 3579999999999999999999999999999999999999999999987642 2333222  2


Q ss_pred             CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc-CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcC
Q 011777          214 GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG-TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADE  292 (477)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~-~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  292 (477)
                      .++.++++|..+++   .+...+++.++++++.. .++++++||+||+|+++|+++++++|+++|+++|++||+++|+||
T Consensus       163 ~~~~~v~~p~~~~~---~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DE  239 (421)
T PRK09792        163 GSVYHVPYPSDLHG---ISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADE  239 (421)
T ss_pred             CCcEEcCCCccccc---ccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence            35667777665432   12234567788887631 346899999999999999989999999999999999999999999


Q ss_pred             cccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhh
Q 011777          293 VQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKER  372 (477)
Q Consensus       293 v~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~  372 (477)
                      ||+||||+| .+|+++++++.||++||||++++|+|+|++++++++++.+....+.+||++||++|+|++++++++++++
T Consensus       240 v~tg~gr~G-~~~a~~~~~~~pDi~t~gK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~  318 (421)
T PRK09792        240 VQSGFARTG-KLFAMDHYADKPDLMTMAKSLAGGMPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKES  318 (421)
T ss_pred             cccCCCCCC-chhHHHhcCCCCcEEEeehhhcCCCceEEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhhh
Confidence            999999999 7889999999999999999999999999999999999988777788999999999999999999998889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEE
Q 011777          373 RQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRI  452 (477)
Q Consensus       373 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi  452 (477)
                      +++++++++++++++|+++.++++.+.+++|.|+|+++++.++ ..+.+.......+.+.|+++||++.+.+..+++|||
T Consensus       319 ~~~~~~~~g~~l~~~l~~l~~~~p~v~~vrG~Gl~~~ie~~~~-~~~~~~~~~~~~l~~~~~~~Gv~i~~~g~~~~~irl  397 (421)
T PRK09792        319 LCERANQLGQRLKNTLIDAKESVPAIAAVRGLGSMIAAEFNDP-QTGEPSAAIAQKIQQRALAQGLLLLTCGAYGNVIRF  397 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcceecccceEEEEEecCC-ccCCcchHHHHHHHHHHHHCCcEEeecCCCCCEEEE
Confidence            9999999999999999999988998999999999999999643 222333345678899999999999765555799999


Q ss_pred             eCCCCCcHHHHHHHHHHHHHHHh
Q 011777          453 KPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       453 ~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      .||++++++||++++++|++++.
T Consensus       398 ~P~l~i~~~ei~~~~~~l~~~l~  420 (421)
T PRK09792        398 LYPLTIPDAQFDAAMKILQDALS  420 (421)
T ss_pred             eCCCcCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999885

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=100.00  E-value=2e-70  Score=558.73  Aligned_cols=393  Identities=28%  Similarity=0.449  Sum_probs=338.2

Q ss_pred             cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-ccCChHHHHHHHHHHhhCCCCC
Q 011777           77 QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-IYLHHAIADFAEALASKMPGNL  155 (477)
Q Consensus        77 ~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~-~~~~~~~~~l~~~La~~~~~~~  155 (477)
                      +.|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+... .+.++...+++++|++.+|.+.
T Consensus        27 ~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~  106 (442)
T PRK13360         27 KAPRLLVAAKGMYYTTHDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIAEIAPGGL  106 (442)
T ss_pred             CCCceEEeeeeeEEEeCCCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHHhCCCCC
Confidence            357899999999999999999999999999999999999999999999998765543 3568889999999999998778


Q ss_pred             CEEEEeCChHHHHHHHHHHHHhcc------CCceEEEEccCccCCcccccccccCCCCCCCCC--CCCeeeecCCC-CcC
Q 011777          156 KVVYFVNSGTEANELAMLMARLST------GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP--QGEIHHVVNPD-PYH  226 (477)
Q Consensus       156 ~~v~~~~sGseA~~~Al~~ar~~~------~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~  226 (477)
                      ++|+|+||||||||.|+|+||.++      +|.+||+|+++|||++.+++++++...++..+.  .+++.+++.+. .++
T Consensus       107 ~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~  186 (442)
T PRK13360        107 NHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLAR  186 (442)
T ss_pred             CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhc
Confidence            899999999999999999999885      578999999999999999999987655443322  24566666663 355


Q ss_pred             CCCCCCH----HHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC
Q 011777          227 GSFGSDA----ARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS  302 (477)
Q Consensus       227 ~~~~~~~----~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~  302 (477)
                      +++..+.    ..+.+++++++.....+++++||+||+++++|++.|+++||++|+++|++||+++|+|||||||||+| 
T Consensus       187 ~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG-  265 (442)
T PRK13360        187 NAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLG-  265 (442)
T ss_pred             cccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc-
Confidence            5554332    22467888888644457899999999999999999999999999999999999999999999999999 


Q ss_pred             CCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhccc-------ccccCCCCcHHHHHHHHHHHHhhchhhHH
Q 011777          303 HYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK-------IQFNTFGGNPVCSAGGLAVLRVIDKERRQ  374 (477)
Q Consensus       303 ~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~-------~~~~t~~~~~~~~aaa~a~l~~l~~~~~~  374 (477)
                      ++|+++++|+.||++||||+++|| +|+|++++++++++.+...       .+++||++||++|++++++|++++++++.
T Consensus       266 ~~~a~~~~gv~PDivt~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~  345 (442)
T PRK13360        266 APFAAQYFGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLL  345 (442)
T ss_pred             cchhhhhcCCCCceeeeeeccccCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhCCHH
Confidence            789999999999999999999998 8999999999999887532       36789999999999999999999988999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeC
Q 011777          375 AHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKP  454 (477)
Q Consensus       375 ~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p  454 (477)
                      +++++++++++++|+++. +++.+.++||.|+++++++......  + ...+..+.+.|+++||++.+.   ++.+||+|
T Consensus       346 ~~~~~~g~~l~~~l~~l~-~~~~v~~vrG~Gl~~~~~l~~~~~~--~-~~~~~~~~~~l~~~Gvl~~~~---~~~lr~~P  418 (442)
T PRK13360        346 TRAARLAPYWEDALHSLR-DAPHVIDIRNLGLVGAVELAPRDGK--P-GKRAYEVFLKCFEKGLMIRYT---GDILALSP  418 (442)
T ss_pred             HHHHHHHHHHHHHHHHhh-cCCCeeeeeccceEEEEEEecCCCC--c-chhHHHHHHHHHHCCcEEEec---CCEEEEeC
Confidence            999999999999999885 4788899999999999999743211  1 123456788899999999764   47899999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhhC
Q 011777          455 PMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       455 ~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      |+++|++|||+++++|+++++++
T Consensus       419 pl~~t~~eid~~~~~l~~~l~~~  441 (442)
T PRK13360        419 PLIIEEAQIDELFDILAQALKET  441 (442)
T ss_pred             CCccCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999998763

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=100.00  E-value=6e-70  Score=552.65  Aligned_cols=411  Identities=26%  Similarity=0.404  Sum_probs=335.8

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHH
Q 011777           39 PPQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVL  118 (477)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~  118 (477)
                      +|.+|.+..   ++++|++++++++..+++....   +..|+.+++|+|+||||.|||+||||++|++++++||+||+|+
T Consensus         7 ~~~~~~~~~---~~~~~~s~~l~~~~~~~~~~~~---~~~p~~~~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~i~   80 (464)
T TIGR00699         7 EPTGPLMKT---EIPGPKSKAAMKQLNEVFDARA---VHFLADYEKSRGNYLVDVDGNRLLDLYSQISSIPIGYNNPALL   80 (464)
T ss_pred             CCCCCcccc---CCCCccHHHHHHHHHhhhcccC---cccceEEEecccCEEEeCCCCEEEEccCCHhhhcCCCCCHHHH
Confidence            455555544   5778999999999888863221   2558999999999999999999999999999999999999999


Q ss_pred             HHHHHH--HhhccccccccCChHHHHHHHHHHh----hCCCCCCEEEEeCChHHHHHHHHHHHHhccC------------
Q 011777          119 NAIFEQ--SKLLQHATTIYLHHAIADFAEALAS----KMPGNLKVVYFVNSGTEANELAMLMARLSTG------------  180 (477)
Q Consensus       119 ~Av~~~--l~~~~~~~~~~~~~~~~~l~~~La~----~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~------------  180 (477)
                      +|+.+|  ...+.+.. .+.++...+++++|++    .+|.++++|+|+|||+||||.|||+||.+++            
T Consensus        81 ~Ai~~q~~~~~l~~~~-~~~~~~~~~la~~l~~~l~~~~p~~~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~  159 (464)
T TIGR00699        81 KAAQSPEMATTLINRP-ALGNFPSKDWAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSE  159 (464)
T ss_pred             HHHHHHHHHHhhcccc-cCCcHHHHHHHHHHHHhHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence            999985  33443433 3567777888888754    6776778999999999999999999987632            


Q ss_pred             ---------------CceEEEEccCccCCcccccccccCCCCCC-CCCCCCeeeecCCCCcCCCCCC-------CHHHHH
Q 011777          181 ---------------NLGMIALRNAYHGGSSGTIGLTALNTWKY-PIPQGEIHHVVNPDPYHGSFGS-------DAARYA  237 (477)
Q Consensus       181 ---------------~~~ii~~~~~yhG~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  237 (477)
                                     |.+||+|+++|||++.+++++++.+.++. ..+..++.+++.|+ +++++..       ....++
T Consensus       160 ~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~l  238 (464)
T TIGR00699       160 EENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPS-LKYPLEEHVKENAKEEQRCL  238 (464)
T ss_pred             ccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCceecCCCC-cccccccccccchhHHHHHH
Confidence                           23799999999999999999987643332 22224556666665 3333211       123457


Q ss_pred             HHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCC--cc
Q 011777          238 QDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVI--PD  315 (477)
Q Consensus       238 ~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~--pD  315 (477)
                      ++++++++. +.+++|+||+||+++++|+++++++||++|+++|++||++||+||||+||||+| .+|+++++|+.  ||
T Consensus       239 ~~l~~~l~~-~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG-~~fa~e~~gv~~~PD  316 (464)
T TIGR00699       239 EEVEDLIKK-WHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATG-KFWAHEHWNLDDPPD  316 (464)
T ss_pred             HHHHHHHHh-cCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCc-chhHHHhcCCCCCCC
Confidence            778888863 346799999999999999999999999999999999999999999999999999 79999999997  99


Q ss_pred             eeeeccccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHh
Q 011777          316 IVTMAKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQER  394 (477)
Q Consensus       316 ivt~sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~  394 (477)
                      ++|+||+++ ||+.    +.++ .........+++||++||++|++++++|++++++++.+++++++++|+++|+++.++
T Consensus       317 i~t~gK~lg~gG~~----~~~~-~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~  391 (464)
T TIGR00699       317 MVTFSKKFQTAGYF----FHDP-AFRPNKPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGLEDLQKK  391 (464)
T ss_pred             EEEehhhhccCCcc----ccch-hccCCCCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999996 5643    3332 222122345889999999999999999999999999999999999999999999888


Q ss_pred             CC-Cceeee--ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHH
Q 011777          395 HD-IIGDVR--GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALD  471 (477)
Q Consensus       395 ~~-~~~~v~--g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~  471 (477)
                      ++ .+.++|  |.|+|+++++.        +......+.+.++++||++.+.+  .++|||.||+++|++|||+++++|+
T Consensus       392 ~~~~i~~vRg~G~Glm~gie~~--------~~~~~~~i~~~~~~~Gvl~~~~g--~~~ir~~Ppl~it~~eid~~~~~l~  461 (464)
T TIGR00699       392 YPEFIQNLRGKGRGTFIAWDTP--------DEAKRDKLLKKARNNGVNIGGCG--VKAIRLRPMLVFQKHHADIFLEIIS  461 (464)
T ss_pred             CCCceeeecccCeEEEEEEecC--------CHHHHHHHHHHHHHCCcEEecCC--CCeEEEeCCCCCCHHHHHHHHHHHH
Confidence            98 789999  99999999982        22335678999999999998753  4899999999999999999999999


Q ss_pred             HHH
Q 011777          472 YSM  474 (477)
Q Consensus       472 ~~l  474 (477)
                      +++
T Consensus       462 ~~~  464 (464)
T TIGR00699       462 KII  464 (464)
T ss_pred             HhC
Confidence            874

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=3.8e-70  Score=553.54  Aligned_cols=381  Identities=23%  Similarity=0.323  Sum_probs=327.7

Q ss_pred             CceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-ccCChHHHHHHHHHHhhCCCCCC
Q 011777           78 KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-IYLHHAIADFAEALASKMPGNLK  156 (477)
Q Consensus        78 ~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~-~~~~~~~~~l~~~La~~~~~~~~  156 (477)
                      .|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+... .+.++...+|+++|++..|.+++
T Consensus        22 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~  101 (422)
T PRK05630         22 RNRLVTSTDGVFLTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKLLNLTDNGLD  101 (422)
T ss_pred             CCeeEEeceeeEEEECCCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHhhCCCCcC
Confidence            57999999999999999999999999999999999999999999999998766543 35678899999999999987788


Q ss_pred             EEEEeCChHHHHHHHHHHHHhcc------CCceEEEEccCccCCcccccccccCC-CCCCCCCC--CCeeeecCCCCcCC
Q 011777          157 VVYFVNSGTEANELAMLMARLST------GNLGMIALRNAYHGGSSGTIGLTALN-TWKYPIPQ--GEIHHVVNPDPYHG  227 (477)
Q Consensus       157 ~v~~~~sGseA~~~Al~~ar~~~------~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~  227 (477)
                      +|+|++|||||+|.|+|+||.++      +|.+||+++++|||.+.+++++++.. .++..+.+  .++.+++.|.....
T Consensus       102 ~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  181 (422)
T PRK05630        102 HVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGS  181 (422)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCC
Confidence            99999999999999999999985      57889999999999999999987632 22222111  34555555532211


Q ss_pred             CCCCCHHHHHHHHHHHHhccCCCCeeEEEeccc-CCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc
Q 011777          228 SFGSDAARYAQDLQDHIDFGTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG  306 (477)
Q Consensus       228 ~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi-~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~  306 (477)
                      .+ ++...+.+.+++++.    +++++||+||+ |+++|+++|+++|+++|+++|++||+++|+||||+||||+| .+|+
T Consensus       182 ~~-~~~~~~~~~~~~~~~----~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG-~~~a  255 (422)
T PRK05630        182 SP-QEISEYLRSLELLID----ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTG-ELFA  255 (422)
T ss_pred             Ch-HHHHHHHHHHHHHHh----hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCc-hhhH
Confidence            11 223445667777765    58999999996 99999999999999999999999999999999999999999 7999


Q ss_pred             ccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhccc------ccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHH
Q 011777          307 FETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK------IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCAD  379 (477)
Q Consensus       307 ~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~------~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~  379 (477)
                      ++++++.||++||||+++|| +|+|++++++++++.+...      .|++||++||++|++++++|++++++++.+++++
T Consensus       256 ~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~  335 (422)
T PRK05630        256 TLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKR  335 (422)
T ss_pred             HHhcCCCCCeeeeechhhcCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            99999999999999999999 5999999999999987531      5789999999999999999999998899999999


Q ss_pred             HHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCc
Q 011777          380 VGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFT  459 (477)
Q Consensus       380 ~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t  459 (477)
                      ++++|+++|+++. +++.+.++||.|+|+++++..+.        ....+.+.++++||++.+.   ++++||.||+++|
T Consensus       336 ~g~~l~~~L~~l~-~~~~v~~vRg~Gl~~~ie~~~~~--------~~~~~~~~~~~~Gl~~~~~---g~~l~~~PpL~it  403 (422)
T PRK05630        336 IEAELIAGLSPLA-HLPGVADVRVLGAIGVVEMEQPV--------DMEEATQAAVDHGVWLRPF---GRLVYVMPPYITT  403 (422)
T ss_pred             HHHHHHHHHHHhh-cCCCeeeeeccccEEEEEECCcc--------cHHHHHHHHHHCCeEEEec---CCEEEEECCccCC
Confidence            9999999999875 47888999999999999995321        1346788999999999864   4799999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 011777          460 KDDADFLVDALDYSMSK  476 (477)
Q Consensus       460 ~e~i~~~l~~l~~~l~~  476 (477)
                      ++|||+++++|+++++.
T Consensus       404 ~~~i~~~~~~l~~al~~  420 (422)
T PRK05630        404 SEQIAQICAALAAAVKA  420 (422)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999999863

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=100.00  E-value=7.8e-70  Score=554.91  Aligned_cols=393  Identities=31%  Similarity=0.468  Sum_probs=337.7

Q ss_pred             cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-ccCChHHHHHHHHHHhhCCCCC
Q 011777           77 QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-IYLHHAIADFAEALASKMPGNL  155 (477)
Q Consensus        77 ~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~-~~~~~~~~~l~~~La~~~~~~~  155 (477)
                      +.|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|++++.+... .+.++...+|+++|++.+|.+.
T Consensus        30 ~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~L~~~~p~~~  109 (445)
T PRK09221         30 AAPRLLVSAEGMYYTDADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPAFQMGHPLAFELAERLAELAPGGL  109 (445)
T ss_pred             CCCceEEeccccEEEeCCCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCC
Confidence            357899999999999999999999999999999999999999999999998766544 3568889999999999998778


Q ss_pred             CEEEEeCChHHHHHHHHHHHHhcc------CCceEEEEccCccCCcccccccccCCCCCCCCC--CCCeeeecCCC-CcC
Q 011777          156 KVVYFVNSGTEANELAMLMARLST------GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP--QGEIHHVVNPD-PYH  226 (477)
Q Consensus       156 ~~v~~~~sGseA~~~Al~~ar~~~------~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~  226 (477)
                      ++|+|++|||||+|.|+|+||.++      +|.+||+++++|||.+.+++++++...++..+.  ..++.+++.++ .++
T Consensus       110 ~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (445)
T PRK09221        110 DHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPE  189 (445)
T ss_pred             CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccc
Confidence            899999999999999999999885      477899999999999999999887654433222  24566666665 555


Q ss_pred             CCCCCCH----HHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC
Q 011777          227 GSFGSDA----ARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS  302 (477)
Q Consensus       227 ~~~~~~~----~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~  302 (477)
                      +++....    ..+.++++++++....+++++||+||+++++|++.|+++||++|+++|++||+++|+||||+||||+| 
T Consensus       190 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG-  268 (445)
T PRK09221        190 NAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLG-  268 (445)
T ss_pred             cccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCc-
Confidence            5454322    22456788888754447899999999999999999999999999999999999999999999999999 


Q ss_pred             CCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcc-------cccccCCCCcHHHHHHHHHHHHhhchhhHH
Q 011777          303 HYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQ-------KIQFNTFGGNPVCSAGGLAVLRVIDKERRQ  374 (477)
Q Consensus       303 ~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~-------~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~  374 (477)
                      .+|+++++++.||++|+||+++|| +|+|++++++++++.+..       ..+++||++||+++++++++|++++++++.
T Consensus       269 ~~~~~~~~gv~PDi~~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~~l~  348 (445)
T PRK09221        269 AAFAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREEDLF  348 (445)
T ss_pred             hhhHHHhcCCCCCEEEeccccccCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhccHH
Confidence            799999999999999999999998 799999999999988753       246789999999999999999999888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeC
Q 011777          375 AHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKP  454 (477)
Q Consensus       375 ~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p  454 (477)
                      +++++++++++++|+++. +++.+.++||.|++.++++.....  .+ ......+.+.|+++||++.++   ++.+||+|
T Consensus       349 ~~~~~~g~~l~~~l~~l~-~~~~v~~vrg~Gl~~~v~~~~~~~--~~-~~~~~~~~~~~~~~Gv~~~~~---~~~lr~~P  421 (445)
T PRK09221        349 ERAAELAPYFEDAVHSLK-GLPHVIDIRNIGLVAGIELAPRPG--AP-GARGYEAFMKCFEKGLLVRYT---GDTIALSP  421 (445)
T ss_pred             HHHHHHHHHHHHHHHhhc-cCCCEEEEecCceEEEEEEecccc--cc-cchHHHHHHHHHHCCeEEeec---CCEEEEEC
Confidence            999999999999999884 578889999999999999975321  11 123456888999999999764   47899999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhhC
Q 011777          455 PMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       455 ~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      |+++|++||++++++|++++.++
T Consensus       422 pl~~t~~eid~~~~~l~~~l~~~  444 (445)
T PRK09221        422 PLIIEKAQIDELVDALGDALRAV  444 (445)
T ss_pred             CccCCHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999998753

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=1e-69  Score=551.00  Aligned_cols=402  Identities=24%  Similarity=0.363  Sum_probs=336.5

Q ss_pred             HHHHHHHhhhcCCCcccc-ccCc-eeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-c
Q 011777           58 DQVFQKRKQFLGPSIFHY-YQKP-LNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-I  134 (477)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~-~~~p-~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~-~  134 (477)
                      .+++++..++++...... ...| +++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|++++.+... .
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~   83 (429)
T PRK06173          4 QELLELDRQHIWHPYSSVTDPIPVYPVERADGVMITLKDGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMFGG   83 (429)
T ss_pred             HHHhhhhhcccccccccccccCCCceEEeceeeEEEcCCCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCCccccc
Confidence            345555555654332211 1234 468999999999999999999999999999999999999999999999776543 3


Q ss_pred             cCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccC-CCC
Q 011777          135 YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTAL-NTW  207 (477)
Q Consensus       135 ~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~-~~~  207 (477)
                      +.++...+|+++|++.+|.++++|+|++|||||||+|+|+||.+      ++|.+||+++++|||.+.+++++++. ..+
T Consensus        84 ~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~  163 (429)
T PRK06173         84 FTHEPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGM  163 (429)
T ss_pred             cCCHHHHHHHHHHHhhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhh
Confidence            56888999999999999877899999999999999999999988      46889999999999999999888653 223


Q ss_pred             CCCCC--CCCeeeecCCCCcCCCCCCC-HHHHHHHHHHHHhccCCCCeeEEEeccc-CCCCCeeeCCchhHHHHHHHHHH
Q 011777          208 KYPIP--QGEIHHVVNPDPYHGSFGSD-AARYAQDLQDHIDFGTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVRK  283 (477)
Q Consensus       208 ~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~le~~i~~~~~~~~a~vi~epi-~~~~G~~~~~~~~l~~l~~l~~~  283 (477)
                      +..+.  .+++.+++.|+.+   ++.+ ...+++.++++++. +++++|+||+||+ ||++|+++|+++|+++|+++|++
T Consensus       164 ~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~l~~l~~~i~~-~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~  239 (429)
T PRK06173        164 HGLFNHSLPVQYFLPQPSIK---FGEEWNDEAIEPLQDLLEQ-KGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQ  239 (429)
T ss_pred             hhcccccCCCCeEeCCCCcc---cchhHHHHHHHHHHHHHHh-CCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHH
Confidence            32222  1345556555432   1111 12346677888863 3468999999997 99999999999999999999999


Q ss_pred             hCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcc-----cccccCCCCcHHH
Q 011777          284 AGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQ-----KIQFNTFGGNPVC  357 (477)
Q Consensus       284 ~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~-----~~~~~t~~~~~~~  357 (477)
                      ||+++|+||||+||||+| .+|+++++|+.||++||||+++|| +|++++++++++++.+..     ..+++||++||++
T Consensus       240 ~g~llI~DEv~tG~GrtG-~~~a~~~~gv~PDiv~~gK~l~gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~  318 (429)
T PRK06173        240 YGVLLIFDEIATGFGRTG-KLFALEHAGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLA  318 (429)
T ss_pred             cCCeEEecchhcCCCcCC-cchHHHhcCCCCCEEEeehhhhCCccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHH
Confidence            999999999999999999 788999999999999999999999 599999999999998753     2477899999999


Q ss_pred             HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcC
Q 011777          358 SAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELG  437 (477)
Q Consensus       358 ~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~G  437 (477)
                      |++++++|++++++++.+++++++++|+++|+++ .+++.+.++|+.|+|+++++..+.        ....+.+.|+++|
T Consensus       319 ~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~-~~~~~v~~vRg~Gl~~~iel~~~~--------~~~~i~~~l~e~G  389 (429)
T PRK06173        319 CAIAAESIRLLLESPWQQNIQRIEAQLKQELAPA-AEFDSVAEVRVLGAIGVVEMKEPV--------NMATLQPRFVEHG  389 (429)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh-hcCCCeeeeeccceEEEEEeCCcc--------cHHHHHHHHHHCC
Confidence            9999999999998889999999999999999986 457888899999999999995321        2357888999999


Q ss_pred             ceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          438 VLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       438 v~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      |++.+.   ++++||.||+++|++||++++++|++++.+
T Consensus       390 i~v~~~---g~~l~~~Ppl~it~~ei~~~~~~l~~~l~~  425 (429)
T PRK06173        390 IWVRPF---GKLVYIMPPFIISPDELSQLTSGLLRVLKQ  425 (429)
T ss_pred             eEEEec---CCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence            999875   479999999999999999999999999864

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=100.00  E-value=1.8e-69  Score=548.43  Aligned_cols=381  Identities=26%  Similarity=0.379  Sum_probs=328.6

Q ss_pred             ceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-ccCChHHHHHHHHHHhhCCCCCCE
Q 011777           79 PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-IYLHHAIADFAEALASKMPGNLKV  157 (477)
Q Consensus        79 p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~-~~~~~~~~~l~~~La~~~~~~~~~  157 (477)
                      |+.+++|+|+|+||.|||+||||.+|++++++||+||+|++|+++|++++.+... .+.++...+|+++|++.+|.+.++
T Consensus        26 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~  105 (428)
T PRK07986         26 VYPVVSAEGCELILADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLVAMTPQPLEC  105 (428)
T ss_pred             CeeEEeeeeeEEEeCCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCccccccCCHHHHHHHHHHHhhCCCCcCE
Confidence            4789999999999999999999999999999999999999999999998765443 346888999999999999877889


Q ss_pred             EEEeCChHHHHHHHHHHHHhc-----cCCceEEEEccCccCCcccccccccCC-CCCCCCC--CCCeeeecCCCCcCCCC
Q 011777          158 VYFVNSGTEANELAMLMARLS-----TGNLGMIALRNAYHGGSSGTIGLTALN-TWKYPIP--QGEIHHVVNPDPYHGSF  229 (477)
Q Consensus       158 v~~~~sGseA~~~Al~~ar~~-----~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~  229 (477)
                      ++|+||||||+|.|+|+||.+     ++|.+||+++++|||.+.+++++++.. .++..+.  .+++.+++.|+.+.   
T Consensus       106 v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---  182 (428)
T PRK07986        106 VFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRF---  182 (428)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCccc---
Confidence            999999999999999999988     678999999999999999999887632 2222221  13555565554321   


Q ss_pred             CCC-HHHHHHHHHHHHhccCCCCeeEEEeccc-CCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc
Q 011777          230 GSD-AARYAQDLQDHIDFGTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF  307 (477)
Q Consensus       230 ~~~-~~~~~~~le~~i~~~~~~~~a~vi~epi-~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~  307 (477)
                      ..+ ....+++++++++. .++++++||+||+ ++.+|+++++++||++|+++|++||+++|+||||+||||+| ++|++
T Consensus       183 ~~~~~~~d~~~l~~~l~~-~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG-~~fa~  260 (428)
T PRK07986        183 DGEWDERDIAPFARLMAA-HRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTG-KLFAC  260 (428)
T ss_pred             chhhHHHHHHHHHHHHHh-CCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCC-Ceeee
Confidence            110 11235677777763 3468999999996 99999999999999999999999999999999999999999 79999


Q ss_pred             cccCCCcceeeecccccCc-cceEEEEeCHHHHHhhccc-----ccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHH
Q 011777          308 ETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVG  381 (477)
Q Consensus       308 ~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~-----~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~  381 (477)
                      +++|+.||++|+||+++|| +|+|++++++++++.+...     .+++||++||++|++++++|++++++++++++++++
T Consensus       261 ~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g  340 (428)
T PRK07986        261 EHAGIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIE  340 (428)
T ss_pred             cccCCCCCEEEechhhhCCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            9999999999999999999 6999999999999988653     378899999999999999999999889999999999


Q ss_pred             HHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHH
Q 011777          382 SHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKD  461 (477)
Q Consensus       382 ~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e  461 (477)
                      ++++++|+++. +++.+.++||.|+|+++++..+.        ....+.+.|+++||++.+.   ++++||.||+++|++
T Consensus       341 ~~l~~~l~~l~-~~~~i~~vRg~Gl~~~ve~~~~~--------~~~~~~~~l~~~Gl~~~~~---g~~i~~~Ppl~it~~  408 (428)
T PRK07986        341 AQLREELAPLR-DAPMVADVRVLGAIGVVETTRPV--------NMAALQRFFVEQGVWIRPF---GKLIYLMPPYIILPE  408 (428)
T ss_pred             HHHHHHHHHHh-cCCCEEeEeccceEEEEEeCCcc--------cHHHHHHHHHHCCcEEEec---CCEEEEeCCCCCCHH
Confidence            99999999986 48888999999999999985321        1456888999999999875   479999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 011777          462 DADFLVDALDYSMSK  476 (477)
Q Consensus       462 ~i~~~l~~l~~~l~~  476 (477)
                      ||++++++|++++.+
T Consensus       409 ei~~~~~~l~~~l~~  423 (428)
T PRK07986        409 QLQRLTAAVNRAVQD  423 (428)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999999863

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=100.00  E-value=6.1e-69  Score=521.22  Aligned_cols=409  Identities=29%  Similarity=0.389  Sum_probs=339.0

Q ss_pred             CCCHHHHHHHHhhhcCCCcc---c-ccc---CceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHh
Q 011777           54 GPSADQVFQKRKQFLGPSIF---H-YYQ---KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSK  126 (477)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~---~-~~~---~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~  126 (477)
                      .++|++++++.+++++-++.   . +..   .|+.+.+|+|+||||+|||+||||+++++.+.|||+||.|++|+.+|++
T Consensus         4 ~~~S~~l~~~A~~~~pGGvnspvra~~~v~~~P~fi~~g~Ga~l~DvDGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~   83 (432)
T COG0001           4 FPKSEALFERAKKVIPGGVNSPVRAFKSVGGYPIFIERGKGAYLTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLE   83 (432)
T ss_pred             ccchHHHHHHHhhhCCCCCCccccccCCCCCCCeeEEeccCCeEEeCCCCEeeehhccCcccccCCCCHHHHHHHHHHHH
Confidence            46889999999999974332   1 222   7999999999999999999999999999999999999999999999999


Q ss_pred             hccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCC
Q 011777          127 LLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNT  206 (477)
Q Consensus       127 ~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~  206 (477)
                      ++...  .-+++...++++.|.+++|. .++|.|+||||||++.|||+||.+|||++||.|+|+|||+.+..+.-.+...
T Consensus        84 ~G~~f--g~Pte~Ei~~Aell~~~~p~-~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~  160 (432)
T COG0001          84 RGLSF--GAPTELEVELAELLIERVPS-IEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGA  160 (432)
T ss_pred             hcCCC--CCCCHHHHHHHHHHHHhcCc-ccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCc
Confidence            86432  23678889999999999986 5899999999999999999999999999999999999999998877644222


Q ss_pred             CCCCCCC-CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhC
Q 011777          207 WKYPIPQ-GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAG  285 (477)
Q Consensus       207 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g  285 (477)
                      -....+. .|+......+..-.+||+     ++.++++++.. ++++|+||+||++++.|+++|.++||++|+++|++||
T Consensus       161 ~t~g~p~s~Gvp~~~a~~ti~~~yND-----~~al~~~~~~~-g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G  234 (432)
T COG0001         161 ATLGSPSSPGVPADVAKHTLVLPYND-----LEALEEAFEEY-GDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHG  234 (432)
T ss_pred             ccCCCCCCCCCChhhhccEEEecCCC-----HHHHHHHHHHc-CCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            2111121 343333333333445664     68888888743 4799999999999999999999999999999999999


Q ss_pred             cEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhccc---ccccCCCCcHHHHHHHH
Q 011777          286 GVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGL  362 (477)
Q Consensus       286 illI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~---~~~~t~~~~~~~~aaa~  362 (477)
                      ++||+|||.|||.- . .-.+.+++|++||+.||+|.+|||+|+|++.+++++|+.+...   .+.+|+++||++++|+.
T Consensus       235 ~lLI~DEViTGFR~-~-~gGaq~~~gi~PDlttlGKiIGGGlP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~  312 (432)
T COG0001         235 ALLIFDEVITGFRV-A-LGGAQGYYGVEPDLTTLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGL  312 (432)
T ss_pred             cEEEEecchhhccc-C-CcccccccCcCcchhhhhhhhcCCcceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHH
Confidence            99999999999943 2 1224578999999999999999999999999999999987653   57899999999999999


Q ss_pred             HHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCC-----CCccHHHHHHHHHHHHHc
Q 011777          363 AVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKE-----KTPAKAETAVLFEKLREL  436 (477)
Q Consensus       363 a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~~  436 (477)
                      ++|+.+.+ +..++++.+.+++|+++|+++..++++...+.+.|.|+.+.|......     +..+......+.+.|+++
T Consensus       313 atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~  392 (432)
T COG0001         313 ATLEELMTEEGVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNR  392 (432)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhC
Confidence            99999987 458999999999999999999999999999999999999999764311     112333455677799999


Q ss_pred             CceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          437 GVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       437 Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      ||++.|.. ++..+ +  +..||++|||+.+++++++++++
T Consensus       393 GV~l~ps~-~ea~f-l--S~ahte~di~~~~~a~~~~~~~~  429 (432)
T COG0001         393 GVYLAPSQ-FEAGF-L--STAHTEEDIDRTLEAADEAFKEL  429 (432)
T ss_pred             CcccCCcc-cccee-e--ecccCHHHHHHHHHHHHHHHHHh
Confidence            99999864 22222 3  68899999999999999998753

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=100.00  E-value=5.2e-70  Score=493.33  Aligned_cols=412  Identities=44%  Similarity=0.762  Sum_probs=370.7

Q ss_pred             HHHHHHHHhhhcCCCccccc-cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccccc
Q 011777           57 ADQVFQKRKQFLGPSIFHYY-QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY  135 (477)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~-~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~  135 (477)
                      .++.+.++++++.+....+| ..|+.|+|++|+|++|++|++|||+.++..  -.|||||+|++|...|+.... ++.++
T Consensus         7 K~etlklRk~hIG~~Cq~Fy~sDP~kivRaq~QYmfDE~g~~yLDCInNVa--Hvghchp~VV~A~~kQmat~~-tN~RF   83 (452)
T KOG1403|consen    7 KTETLKLRKQHIGQACQLFYRSDPLKIVRAQGQYMFDEEGTRYLDCINNVA--HVGHCHPEVVRAGAKQMATIS-TNNRF   83 (452)
T ss_pred             hHHHHhHHHhccCcceeEEecCCchhhehhccceeeccCcccHHHHhhhhh--hcccCCHHHHHHHHHHHhHhc-ccchh
Confidence            35788999999988765544 579999999999999999999999998775  579999999999999998653 45578


Q ss_pred             CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCC---
Q 011777          136 LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP---  212 (477)
Q Consensus       136 ~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~---  212 (477)
                      .+....+.++.|...+|. ++.++|+|||||||++|+++||.+++..++|..+.+|||+....+-++   .|++..+   
T Consensus        84 lhd~lv~cA~~l~stlPe-Lsvc~F~NSGSEANDLALRLAR~ftkhqDvItldHAYHGHl~s~mE~S---PYKF~~g~~v  159 (452)
T KOG1403|consen   84 LHDELVQCARTLTSTLPE-LSVCFFVNSGSEANDLALRLARNFTKHQDVITLDHAYHGHLQSVMEVS---PYKFNQGGGV  159 (452)
T ss_pred             hHHHHHHHHHHHhhcCCC-ceEEEEecCCchhhHHHHHHHHhhcccCceEEEechhccceeeeeecc---ceeccCCCCc
Confidence            888999999999999997 899999999999999999999999999999999999999987776664   4555433   


Q ss_pred             -CCC-eeeecCCCCcCCCCCCC-------HHHHHHHHHHHHhc--cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHH
Q 011777          213 -QGE-IHHVVNPDPYHGSFGSD-------AARYAQDLQDHIDF--GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIV  281 (477)
Q Consensus       213 -~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~le~~i~~--~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~  281 (477)
                       .++ ++..|.|+.||+.+.++       +..|.++++++++.  .....+|++|.|..|+.||.+.||.+|++.+.+..
T Consensus       160 ~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~V  239 (452)
T KOG1403|consen  160 AKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAV  239 (452)
T ss_pred             CCCceeEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHH
Confidence             244 45567899999887542       23578889888873  24567999999999999999999999999999999


Q ss_pred             HHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcc--cccccCCCCcHHHHH
Q 011777          282 RKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQ--KIQFNTFGGNPVCSA  359 (477)
Q Consensus       282 ~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~--~~~~~t~~~~~~~~a  359 (477)
                      +.+|.++|.||||.||||.|+++|+++.++..|||+|++|.+|+|.|+++|++++++.+.+..  ..+++||+|||++||
T Consensus       240 r~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtmgKpmGNGhPVa~VattkeIA~Af~atgv~YFNTyGGnPVsCA  319 (452)
T KOG1403|consen  240 RSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVTMGKPMGNGHPVAAVATTKEIAQAFHATGVEYFNTYGGNPVSCA  319 (452)
T ss_pred             hcCCCeEEeehhhhcccccchhhhhhhhhccccchheecccCCCCCeeeEEeccHHHHHHhccccceehhccCCCchhHH
Confidence            999999999999999999999999999999999999999999999999999999999999875  368899999999999


Q ss_pred             HHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-Cc
Q 011777          360 GGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GV  438 (477)
Q Consensus       360 aa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv  438 (477)
                      +++++++++++|+++++..+.+++|...|+++..+|+.++++||.|+|+++++++|...+.|+...+..+..+|++. +|
T Consensus       320 v~laVm~v~e~E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~V  399 (452)
T KOG1403|consen  320 VGLAVMRVCEDENLQEHAQQVGEKLEVLLRRLKQKHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRV  399 (452)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999875 79


Q ss_pred             eeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          439 LVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       439 ~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      ++...|+..|.+.|.||++.+++++++++..|++++.
T Consensus       400 LlsaDGPh~NilKiKPPmCFneena~e~v~~ld~iLT  436 (452)
T KOG1403|consen  400 LLSADGPHRNILKIKPPMCFNEENADEFVLGLDEILT  436 (452)
T ss_pred             EEecCCCCCceeecCCCcccChhhHHHHHHHHHHHHH
Confidence            9998888899999999999999999999999998875

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=3.2e-68  Score=542.38  Aligned_cols=408  Identities=26%  Similarity=0.371  Sum_probs=339.6

Q ss_pred             CCCHHHHHHHHhhhcCCCcc---ccc-----cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHH
Q 011777           54 GPSADQVFQKRKQFLGPSIF---HYY-----QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQS  125 (477)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~---~~~-----~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l  125 (477)
                      .|+|.+++++.+++++-...   .++     +.|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|+
T Consensus         3 ~~~s~~~~~~a~~~~p~g~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~   82 (428)
T PRK12389          3 FTKSEALHQEALEHIVGGVNSPSRSYKAVGGGAPVVMERGKGAYFYDVDGNKYIDYLAAYGPIITGHAHPHITKAITEAA   82 (428)
T ss_pred             ChhhHHHHHHHHhhCCCCCCCccccccccCCCCCeEEEeccCCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHH
Confidence            36889999999999975432   222     3589999999999999999999999999999999999999999999999


Q ss_pred             hhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCC
Q 011777          126 KLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALN  205 (477)
Q Consensus       126 ~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~  205 (477)
                      +++.+.  .+.++...+++++|++.+|. .++++|++|||||||.|+|+||.+++|.+||.|+++|||++.++++.++..
T Consensus        83 ~~~~~~--~~~~~~~~~la~~l~~~~p~-~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~  159 (428)
T PRK12389         83 ENGVLY--GTPTELEIEFAKMLKEAIPS-LEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSG  159 (428)
T ss_pred             HhCCcc--CCCCHHHHHHHHHHHHhCCC-CcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCc
Confidence            986542  35678899999999999884 689999999999999999999999999999999999999999999887643


Q ss_pred             CCCCCCCC-CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHh
Q 011777          206 TWKYPIPQ-GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKA  284 (477)
Q Consensus       206 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~  284 (477)
                      .++...+. .++.....++.++.++++     .+.++++++.. .+++++||+||+++++|+++|+++||++|+++|++|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~~l~~~l~~~-~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~  233 (428)
T PRK12389        160 PSTLGTPDSAGVPKSIAQEVITVPFND-----IEALKEALDKW-GDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEA  233 (428)
T ss_pred             ccccCCCCCCCCCCcccCceEEcCCCC-----HHHHHHHHHhc-CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHc
Confidence            32211111 122211223333444442     47788888633 467999999999999999999999999999999999


Q ss_pred             CcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcc---cccccCCCCcHHHHHHH
Q 011777          285 GGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQ---KIQFNTFGGNPVCSAGG  361 (477)
Q Consensus       285 gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~---~~~~~t~~~~~~~~aaa  361 (477)
                      |+++|+||||+|| |+| ..++.+++|+.||++|+||+++||+|+|++++++++++.+..   ..+++||++||++|+|+
T Consensus       234 g~llI~DEV~tG~-Rt~-~~~a~~~~gv~PDivt~gK~lggG~Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaa  311 (428)
T PRK12389        234 GALVIYDEVITAF-RFM-YGGAQDLLGVEPDLTALGKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAG  311 (428)
T ss_pred             CCEEEEEcccccc-ccC-cchhhHHhCCCCCeeeechhhcCCCceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHH
Confidence            9999999999999 898 566778899999999999999999999999999999998853   35788999999999999


Q ss_pred             HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee-eccceeEEEEEeeCCCC-----CCccHHHHHHHHHHHHH
Q 011777          362 LAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV-RGRGLMVGMELVTDRKE-----KTPAKAETAVLFEKLRE  435 (477)
Q Consensus       362 ~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~  435 (477)
                      +++|++++++++++++++++++|+++|+++.++++.+.++ ++.| ++++++..+...     ..++......+.+.|++
T Consensus       312 la~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~~g-~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  390 (428)
T PRK12389        312 IACLEVLQQEGVYEKLDRLGAMLEEGILEAAEKHGITITINRLKG-ALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLN  390 (428)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc-EEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHH
Confidence            9999999988999999999999999999998889987777 7777 778988754211     11233345778899999


Q ss_pred             cCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          436 LGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       436 ~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      +||++.+.+  .+.  +.||+++|++||++++++|+++++++
T Consensus       391 ~Gv~~~~~~--~~~--~~~~l~~t~e~id~~~~~l~~~l~~~  428 (428)
T PRK12389        391 QGINLAPSK--YEA--WFLTTAHTEEDIEETLEAVDRAFAQL  428 (428)
T ss_pred             CCcEeecCC--CCC--eeecCCCCHHHHHHHHHHHHHHHHhC
Confidence            999998753  222  45799999999999999999999764

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=100.00  E-value=3.9e-68  Score=542.93  Aligned_cols=411  Identities=22%  Similarity=0.326  Sum_probs=332.9

Q ss_pred             CCCCCHHHHHHHHhhhcCCCcc---ccc----cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHH
Q 011777           52 YTGPSADQVFQKRKQFLGPSIF---HYY----QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQ  124 (477)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~---~~~----~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~  124 (477)
                      +..++|.+++++.+++++-+..   ..+    +.|+++++|+|+||||.|||+||||.+|+++++|||+||+|.+|+.+|
T Consensus        48 ~~~~~S~~l~~ra~~~~pgGv~~~~r~~~~~~~~p~~~~~a~G~~l~D~dG~~yiD~~~g~g~~~lGh~~p~v~~av~~q  127 (474)
T PLN02482         48 FTTTKSEEIFKAAKELMPGGVNSPVRAFKSVGGQPIVFDRVKGSYAWDVDGNEYIDYVGSWGPAIIGHADDEVLAALAET  127 (474)
T ss_pred             CCChHHHHHHHHHHhhCCCCCCCcchhhcccCCCCeeEEEeeeCEEEECCCCEEEEecccccccccCCCCHHHHHHHHHH
Confidence            4457899999999999974332   111    358999999999999999999999999999999999999999999999


Q ss_pred             HhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccC
Q 011777          125 SKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTAL  204 (477)
Q Consensus       125 l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~  204 (477)
                      ++++.+.  ...++...+|+++|++.+|. .++|+|+||||||++.|+|+||.+|||.+||.|+++|||+++........
T Consensus       128 l~~~~~~--~~~~~~~~~lAe~l~~~~p~-~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~  204 (474)
T PLN02482        128 MKKGTSF--GAPCLLENVLAEMVIDAVPS-VEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGS  204 (474)
T ss_pred             HhhCCCC--CCCCHHHHHHHHHHHHhCCC-CCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCC
Confidence            9986543  34678889999999999986 78999999999999999999999999999999999999988654433221


Q ss_pred             CCCCCCCC-CCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHH
Q 011777          205 NTWKYPIP-QGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK  283 (477)
Q Consensus       205 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~  283 (477)
                      .......+ ..++.....++..+.++++     +++++++++. +++++++||+||+++++|+++|+++||++|+++|++
T Consensus       205 ~~~~~~~~~~~g~~~~~~~~~~~~~~nd-----~~~l~~~l~~-~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~  278 (474)
T PLN02482        205 GVATLGLPDSPGVPKAATSATLTAPYND-----LEAVKKLFEA-NKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKE  278 (474)
T ss_pred             CccccCCCCCCCCCCCCCCCeEEecCCC-----hHHHHHHHHh-CCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHH
Confidence            11111011 1222222222233445553     4778888863 357899999999999999999999999999999999


Q ss_pred             hCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcc---cccccCCCCcHHHHHH
Q 011777          284 AGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQ---KIQFNTFGGNPVCSAG  360 (477)
Q Consensus       284 ~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~---~~~~~t~~~~~~~~aa  360 (477)
                      ||+++|+|||++|| |+| ..++.+++|+.||++||||+++||+|+|++++++++++.+..   ..+++||++||++++|
T Consensus       279 ~g~lLI~DEV~tGf-R~g-~~ga~~~~gv~PDi~t~gK~lggG~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aA  356 (474)
T PLN02482        279 NGALLVFDEVMTGF-RIA-YGGAQEYFGITPDLTTLGKVIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTA  356 (474)
T ss_pred             cCCEEEEeccccCe-ecC-cchHhHHhCCCCCEEEecchhhCCCceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHH
Confidence            99999999999999 998 678888999999999999999999999999999999998853   3477899999999999


Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCC-----CCCccHHHHHHHHHHHHH
Q 011777          361 GLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRK-----EKTPAKAETAVLFEKLRE  435 (477)
Q Consensus       361 a~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~-----~~~~~~~~~~~~~~~l~~  435 (477)
                      ++++|++++++++++++++++++|+++|+++..+++....+.+.+.|++++|..+..     .+.++......+.+.|++
T Consensus       357 ala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~  436 (474)
T PLN02482        357 GIHTLKRLQQPGTYEYLDKITKKLIQGILEAGKKAGHEMCGGYISGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLE  436 (474)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcccceEEEEEEecCCccChhhhccCCHHHHHHHHHHHHH
Confidence            999999998889999999999999999999987765332222333377888875421     122344456678899999


Q ss_pred             cCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          436 LGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       436 ~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      +||++.+.+...   + .||+.+|++|||+++++++++++++
T Consensus       437 ~Gv~~~~~~~~~---~-~psl~ht~~dId~~l~al~~~l~~~  474 (474)
T PLN02482        437 EGVYLAPSQFEA---G-FTSLAHTEEDIDFTIAAAERVLARI  474 (474)
T ss_pred             CCeEEeccCCCC---C-cCCCCCCHHHHHHHHHHHHHHHHhC
Confidence            999998753211   2 3899999999999999999999764

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=2.3e-68  Score=538.73  Aligned_cols=374  Identities=30%  Similarity=0.501  Sum_probs=329.2

Q ss_pred             cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCC
Q 011777           77 QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLK  156 (477)
Q Consensus        77 ~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~  156 (477)
                      +.|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+....+.++...+|+++|++..|. .+
T Consensus        21 ~~~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~-~~   99 (408)
T PRK04612         21 PRQVVLERGQGSRVWDDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTSNVFYSAPPLKLAEELVTASRF-AE   99 (408)
T ss_pred             CCCceEEEeeeCEEEECCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhCCC-CC
Confidence            45789999999999999999999999999999999999999999999999876665456678889999999998875 37


Q ss_pred             EEEEeCChHHHHHHHHHHHHhcc-------CCceEEEEccCccCCcccccccccCCCCCCCCC--CCCeeeecCCCCcCC
Q 011777          157 VVYFVNSGTEANELAMLMARLST-------GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP--QGEIHHVVNPDPYHG  227 (477)
Q Consensus       157 ~v~~~~sGseA~~~Al~~ar~~~-------~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  227 (477)
                      +++|++|||||||.|+|+||.++       +|.+||.|+++|||++.++++.++.+.++..+.  ..++.+++.++    
T Consensus       100 ~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d----  175 (408)
T PRK04612        100 KVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFND----  175 (408)
T ss_pred             EEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCC----
Confidence            99999999999999999999884       356799999999999999999887655443322  13344433221    


Q ss_pred             CCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc
Q 011777          228 SFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF  307 (477)
Q Consensus       228 ~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~  307 (477)
                               .+.+++++.   .+++++||+||+++++|++.++++|+++|+++|++||+++|+||||+||||+| .+|+.
T Consensus       176 ---------~~~l~~~~~---~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G-~~~a~  242 (408)
T PRK04612        176 ---------VEALEAAMA---GGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTG-TLFAH  242 (408)
T ss_pred             ---------HHHHHHhhC---CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC-chhhh
Confidence                     467777775   46899999999999999999999999999999999999999999999999999 78887


Q ss_pred             cccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Q 011777          308 ETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGR  387 (477)
Q Consensus       308 ~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~  387 (477)
                      +.+++.||++||||++++|+|+|++++++++++.+....+.+||++||++|++++++|+.++++++.+++++++++++++
T Consensus       243 ~~~~~~pdi~t~~K~l~~G~piga~~~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~  322 (408)
T PRK04612        243 WQEQVTPDIVTLAKALGGGFPIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAALRAG  322 (408)
T ss_pred             hhcCCCCCEEEEcchhcCCCceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999888777788999999999999999999999899999999999999999


Q ss_pred             HHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHH
Q 011777          388 LRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLV  467 (477)
Q Consensus       388 L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l  467 (477)
                      |+++.++++.+.+++|.|+|+++++..+.      ......+.+.|+++||++.+.+  .+.+||.||+.+|++||++++
T Consensus       323 l~~l~~~~~~i~~vrg~Gl~~~i~~~~~~------~~~a~~i~~~l~~~Gvlv~~~g--~~~lRl~Ppl~it~eeid~~l  394 (408)
T PRK04612        323 LEALNAEFGVFAQVRGRGLMLGAVLAPAH------AGQAGAILDLAAEHGLLLLQAG--PDVLRFVPALNLTDAELADGL  394 (408)
T ss_pred             HHHHHhhCCCeeeeeccceEEEEEecCch------hhHHHHHHHHHHHCCeEEeeCC--CCEEEEcCCccCCHHHHHHHH
Confidence            99999999999999999999999996321      1235678889999999998754  489999999999999999999


Q ss_pred             HHHHHHHhh
Q 011777          468 DALDYSMSK  476 (477)
Q Consensus       468 ~~l~~~l~~  476 (477)
                      ++|++++.+
T Consensus       395 ~~l~~~l~~  403 (408)
T PRK04612        395 ARLRLALAD  403 (408)
T ss_pred             HHHHHHHHH
Confidence            999999864

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=100.00  E-value=1.7e-68  Score=541.78  Aligned_cols=384  Identities=26%  Similarity=0.396  Sum_probs=328.4

Q ss_pred             CceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-ccCChHHHHHHHHHHhhC--CCC
Q 011777           78 KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-IYLHHAIADFAEALASKM--PGN  154 (477)
Q Consensus        78 ~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~-~~~~~~~~~l~~~La~~~--~~~  154 (477)
                      .|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|+++..+... .+.++...+|+++|++.+  |.+
T Consensus        17 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~   96 (412)
T TIGR02407        17 FPTVFEKAKGSTLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNEIILKPRG   96 (412)
T ss_pred             CCceEEecccCEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHHhccCccC
Confidence            58999999999999999999999999999999999999999999999987544333 245788899999999985  322


Q ss_pred             C-CEEEE-eCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCC--CCCCeeeecCCCCcCCCCC
Q 011777          155 L-KVVYF-VNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI--PQGEIHHVVNPDPYHGSFG  230 (477)
Q Consensus       155 ~-~~v~~-~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  230 (477)
                      . ++++| +||||||||.|+|+||.+++|.+||+++++|||++.++++.++...++...  +..++.+++.++...    
T Consensus        97 ~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~----  172 (412)
T TIGR02407        97 LDYKVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLG----  172 (412)
T ss_pred             CCceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccc----
Confidence            3 25656 599999999999999999999999999999999999999988755443332  224566665554221    


Q ss_pred             CCHHHHHHHHHHHHhccC--CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccc
Q 011777          231 SDAARYAQDLQDHIDFGT--SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE  308 (477)
Q Consensus       231 ~~~~~~~~~le~~i~~~~--~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~  308 (477)
                       +...+++.++++++...  .+++++||+||+|+++|+++++++||++|+++|++||++||+||||+||||+| ++|+++
T Consensus       173 -~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG-~~~a~~  250 (412)
T TIGR02407       173 -GDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTG-TFFSFE  250 (412)
T ss_pred             -cchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc-hhHHhc
Confidence             11223567888876321  25789999999999999999999999999999999999999999999999999 788999


Q ss_pred             ccCCCcceeeecccccC-ccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHh-hchhhHHHHHHHHHHHHHH
Q 011777          309 TQGVIPDIVTMAKGIGN-GLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRV-IDKERRQAHCADVGSHLLG  386 (477)
Q Consensus       309 ~~gv~pDivt~sK~lg~-G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~-l~~~~~~~~~~~~~~~l~~  386 (477)
                      ++++.||++++||++++ |+|+|++++++++ +.+....+.+||++||++++++.++|+. ++++++.++++++++++++
T Consensus       251 ~~~v~PDi~~~~K~lg~~G~pigav~~~~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~  329 (412)
T TIGR02407       251 PAGIEPDIVCLSKSISGYGLPLALTLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQE  329 (412)
T ss_pred             ccCCCCCEEEechhccCCccceeEEEEchhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            99999999999999998 9999999999987 6665567889999999999999999995 7778899999999999999


Q ss_pred             HHHHHHHhCC-CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHH
Q 011777          387 RLRTLQERHD-IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADF  465 (477)
Q Consensus       387 ~L~~l~~~~~-~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~  465 (477)
                      +|+++.++++ .+.++++.|+|+++++..        ......+.+.|+++||++.+.+..++.|||.||+++|++|+++
T Consensus       330 ~l~~l~~~~~~~~~~vrg~Gl~~~l~l~~--------~~~~~~~~~~~~~~Gv~v~~~~~~~~~lr~~p~l~~t~~~i~~  401 (412)
T TIGR02407       330 RLDRIVAEYPELIKQVRGRGLMQGIECGD--------GDLAGKIAKAAFENGLIIETSGPNDEVIKLLPPLTIDEETLQQ  401 (412)
T ss_pred             HHHHHHhhCCCceEeeecceeEEEEEecC--------hHHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHHHH
Confidence            9999988887 678999999999999942        2345678899999999998766557899999999999999999


Q ss_pred             HHHHHHHHHhh
Q 011777          466 LVDALDYSMSK  476 (477)
Q Consensus       466 ~l~~l~~~l~~  476 (477)
                      ++++|++++++
T Consensus       402 ~~~~l~~~l~~  412 (412)
T TIGR02407       402 GLDILEQAVEE  412 (412)
T ss_pred             HHHHHHHHHhC
Confidence            99999999864

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=100.00  E-value=1.7e-68  Score=529.75  Aligned_cols=355  Identities=35%  Similarity=0.565  Sum_probs=311.3

Q ss_pred             ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCC
Q 011777           76 YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNL  155 (477)
Q Consensus        76 ~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~  155 (477)
                      |..|+.+++|+|+|+||.|||+||||.+|++++++||+||+|++|+++|++++.+....+.++...+++++|++..  +.
T Consensus         4 ~~~~~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~l~~~~--~~   81 (364)
T PRK04013          4 YRKRLRLVRGEGIYVWDSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAGPMFEHEEKEEMLEELSKWV--NY   81 (364)
T ss_pred             cCCCccEEEeecCEEEECCCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCCccCCcCCHHHHHHHHHHHhhc--CC
Confidence            5678999999999999999999999999999999999999999999999999776655677899999999999987  35


Q ss_pred             CEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCC--CCeeeecCCCCcCCCCCCCH
Q 011777          156 KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ--GEIHHVVNPDPYHGSFGSDA  233 (477)
Q Consensus       156 ~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  233 (477)
                      ++++|+||||||++.|+|+||.+++|++||+++++|||++.++++.++.+.++....+  .++.+++.++          
T Consensus        82 ~~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~d----------  151 (364)
T PRK04013         82 EYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFND----------  151 (364)
T ss_pred             CEEEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCCC----------
Confidence            7999999999999999999999999999999999999999999998876554433322  3444443221          


Q ss_pred             HHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCC
Q 011777          234 ARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVI  313 (477)
Q Consensus       234 ~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~  313 (477)
                         .+++++.+.    +++++||+||++|++|+++++++||++|+++|++||+++|+||||+|| |+| ++|+++++++.
T Consensus       152 ---~~~l~~~i~----~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG-~~~a~~~~gv~  222 (364)
T PRK04013        152 ---VEAAKEAIT----KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTG-KFLAIEHYKVE  222 (364)
T ss_pred             ---HHHHHHHhc----CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCC-chhHHHhcCCC
Confidence               366777775    579999999999999999999999999999999999999999999999 999 79999999999


Q ss_pred             cceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 011777          314 PDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQE  393 (477)
Q Consensus       314 pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~  393 (477)
                      ||++|+||+++||+|+|+++.++++.    ...|++||++||++|+|++++|++++++++.+++++.       |.++. 
T Consensus       223 PDiv~~gK~lggG~P~~a~~~~~~~~----~~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~-------l~~l~-  290 (364)
T PRK04013        223 PDIVTMGKGIGNGVPVSLTLTNFDVE----RGKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK-------FIEIK-  290 (364)
T ss_pred             CCEEEecccccCCceeEEEEeccccc----CCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH-------HHHhc-
Confidence            99999999999999999999998862    3458899999999999999999999999999988774       33332 


Q ss_pred             hCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          394 RHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       394 ~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                       .+.+.++||.|+|+++++..      +    ...+.+.++++|+++.+.+  .+++||.||+++|++|+++++++|+++
T Consensus       291 -~~~v~~vRG~Gl~~gve~~~------~----~~~i~~~~~~~Gll~~~~g--~~vlr~~Ppl~it~~~i~~~~~~l~~~  357 (364)
T PRK04013        291 -GERVVTTRGRGLMIGIVLKK------P----VGKYVEELQNRGYLVHTAG--QRVIRLLPPLIISKDTMEEAKSAIEGV  357 (364)
T ss_pred             -cCcceeeeeCcEEEEEEeCC------c----HHHHHHHHHhCCcEEeeCC--CCEEEEeCCcccCHHHHHHHHHHHHHH
Confidence             36789999999999999953      1    3468889999999998754  589999999999999999999999999


Q ss_pred             Hhh
Q 011777          474 MSK  476 (477)
Q Consensus       474 l~~  476 (477)
                      +.+
T Consensus       358 l~~  360 (364)
T PRK04013        358 IND  360 (364)
T ss_pred             HHH
Confidence            875

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=100.00  E-value=5.5e-68  Score=540.60  Aligned_cols=384  Identities=26%  Similarity=0.430  Sum_probs=327.6

Q ss_pred             CceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-ccCChHHHHHHHHHHhhC--CCC
Q 011777           78 KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-IYLHHAIADFAEALASKM--PGN  154 (477)
Q Consensus        78 ~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~-~~~~~~~~~l~~~La~~~--~~~  154 (477)
                      .|+++++|+|+||||.|||+||||.+|+++++|||+||+|.+|+++|+++..+... .+.++...+|+++|++.+  |.+
T Consensus        21 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~  100 (425)
T PRK09264         21 FPVVFDKAKGSWLYDEDGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEETILKPRG  100 (425)
T ss_pred             CCccEEeeecCEEEeCCCCEeeecccchhhccCCCCCHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHhhcCCcC
Confidence            58999999999999999999999999999999999999999999999987544333 345788899999999975  333


Q ss_pred             CC-EEEE-eCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCC--CCCCeeeecCCCCcCCCCC
Q 011777          155 LK-VVYF-VNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI--PQGEIHHVVNPDPYHGSFG  230 (477)
Q Consensus       155 ~~-~v~~-~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  230 (477)
                      .+ +++| +||||||||.|+|+||.+++|.+||+++++|||++.++++.++...++...  +..++.++++|+.++..  
T Consensus       101 ~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--  178 (425)
T PRK09264        101 LDYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGD--  178 (425)
T ss_pred             CCceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccc--
Confidence            43 6766 589999999999999999999999999999999999999998765444322  22467777766543221  


Q ss_pred             CCHHHHHHHHHHHHhccC--CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccc
Q 011777          231 SDAARYAQDLQDHIDFGT--SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE  308 (477)
Q Consensus       231 ~~~~~~~~~le~~i~~~~--~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~  308 (477)
                         ...+++++++++...  .+++++||+||+++++|+++++++||++|+++|++||++||+||||+||||+| .+|+++
T Consensus       179 ---~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG-~~~~~~  254 (425)
T PRK09264        179 ---VDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTG-TFFSFE  254 (425)
T ss_pred             ---hhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCcccc-HHHHHh
Confidence               123577888886322  25799999999999999999999999999999999999999999999999999 788899


Q ss_pred             ccCCCcceeeecccccC-ccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHH-HhhchhhHHHHHHHHHHHHHH
Q 011777          309 TQGVIPDIVTMAKGIGN-GLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVL-RVIDKERRQAHCADVGSHLLG  386 (477)
Q Consensus       309 ~~gv~pDivt~sK~lg~-G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l-~~l~~~~~~~~~~~~~~~l~~  386 (477)
                      ++++.||++|+||++++ |+|+|++++++++. .+....+.+||++||+++++++++| ++++++++.++++++++++++
T Consensus       255 ~~~v~PDi~t~~K~l~~~G~pigav~~~~~i~-~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l~~  333 (425)
T PRK09264        255 RAGITPDIVTLSKSISGYGLPMALVLIKPELD-VWKPGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRE  333 (425)
T ss_pred             hcCCCCCEEEeccccCCCccceEEEEEchhhh-ccCCCccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            99999999999999998 99999999999974 5555567889999999999999999 666667899999999999999


Q ss_pred             HHHHHHHhCCC-ceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHH
Q 011777          387 RLRTLQERHDI-IGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADF  465 (477)
Q Consensus       387 ~L~~l~~~~~~-~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~  465 (477)
                      +|+++..+++. +.++++.|+++++++..        ......+.+.++++||++.+.+.+.+.|||+||+++|++||++
T Consensus       334 ~l~~l~~~~~~~~~~vrg~Gl~~~i~l~~--------~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~p~l~~t~~ei~~  405 (425)
T PRK09264        334 RLEEIAAKYPGLGAEVRGRGMMQGIDFGD--------GELAGKIAAEAFENGLIIETSGPEDEVVKLLPPLTIDEEELEE  405 (425)
T ss_pred             HHHHHHHhCCCceecceecccEEEEEecC--------hHHHHHHHHHHHHCCCEEeccCCCCCEEEEeCCCCCCHHHHHH
Confidence            99999877874 47899999999999842        2345678899999999998876566899999999999999999


Q ss_pred             HHHHHHHHHhh
Q 011777          466 LVDALDYSMSK  476 (477)
Q Consensus       466 ~l~~l~~~l~~  476 (477)
                      ++++|++++++
T Consensus       406 ~~~~l~~~l~~  416 (425)
T PRK09264        406 GLDILEEAVAE  416 (425)
T ss_pred             HHHHHHHHHHH
Confidence            99999998864

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=3.5e-67  Score=535.53  Aligned_cols=383  Identities=30%  Similarity=0.440  Sum_probs=330.7

Q ss_pred             CceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-ccCChHHHHHHHHHHhhCCCCCC
Q 011777           78 KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-IYLHHAIADFAEALASKMPGNLK  156 (477)
Q Consensus        78 ~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~-~~~~~~~~~l~~~La~~~~~~~~  156 (477)
                      .|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|++++.+... .+.++...+|+++|++.+|.+.+
T Consensus        24 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~  103 (423)
T PRK05964         24 PPIPIVRAEGAYLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIFAGFTHEPAERLAQRLVALTPGGLD  103 (423)
T ss_pred             CCeeEEeccccEEEeCCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence            58999999999999999999999999999999999999999999999998765443 46788899999999999987678


Q ss_pred             EEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccCCCCCCCCCC--CCeeeecCCCCcCCC
Q 011777          157 VVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ--GEIHHVVNPDPYHGS  228 (477)
Q Consensus       157 ~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  228 (477)
                      +++|++||+||+|.|+|+||.+      ++|.+||+++++|||++.+++++++...++....+  .++.++++|.     
T Consensus       104 ~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~-----  178 (423)
T PRK05964        104 HVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPP-----  178 (423)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCc-----
Confidence            9999999999999999999988      68899999999999999999998775544322211  2344454432     


Q ss_pred             CCCCHHHHHHHHHHHHhccCCCCeeEEEecc-cCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc
Q 011777          229 FGSDAARYAQDLQDHIDFGTSGKVAGFIAET-IQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF  307 (477)
Q Consensus       229 ~~~~~~~~~~~le~~i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~  307 (477)
                       ++....+++++++++.. +.+++++||+|| +++++|+++++++||++|+++|++||++||+||||+||||+| .+|++
T Consensus       179 -~d~~~~~~~~l~~~l~~-~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G-~~~a~  255 (423)
T PRK05964        179 -DGYEQATLDALEALLEK-HAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTG-TLFAC  255 (423)
T ss_pred             -chhHHHHHHHHHHHHHh-CCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc-chhHH
Confidence             11223456788888863 346899999999 799999999999999999999999999999999999999999 78888


Q ss_pred             cccCCCcceeeecccccCc-cceEEEEeCHHHHHhhccc------ccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHH
Q 011777          308 ETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK------IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADV  380 (477)
Q Consensus       308 ~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~------~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~  380 (477)
                      +++++.||++++||+++|| +|+|++++++++++.+...      .+++||++||+++++++++|++++++++.+++.++
T Consensus       256 ~~~~v~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~  335 (423)
T PRK05964        256 EQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAAL  335 (423)
T ss_pred             HhcCCCCCeeeeehhhhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9999999999999999988 8999999999999987532      47789999999999999999999888999999999


Q ss_pred             HHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcH
Q 011777          381 GSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTK  460 (477)
Q Consensus       381 ~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~  460 (477)
                      +++++++|+++. +++.+.++++.|+|+++++..+..     ......+.+.|.++||++.+.   ++.+||+||+.+|+
T Consensus       336 g~~l~~~l~~l~-~~~~i~~vrg~Gl~~~i~l~~~~~-----~~~~~~l~~~l~~~Gv~v~~~---~~~lR~~p~l~~t~  406 (423)
T PRK05964        336 SAGLAEGLEPFR-DLPGVADVRVLGAIGAVELDRPVL-----ERDGPALRAFALERGVLLRPL---GNTIYLMPPYIITA  406 (423)
T ss_pred             HHHHHHHHHhhc-cCCCeEEeecccEEEEEEeccCcc-----hhHHHHHHHHHHHCCeEEEec---CCEEEEeCCcccCH
Confidence            999999999884 477778899999999999954310     123567889999999999874   47899999999999


Q ss_pred             HHHHHHHHHHHHHHhhC
Q 011777          461 DDADFLVDALDYSMSKL  477 (477)
Q Consensus       461 e~i~~~l~~l~~~l~~l  477 (477)
                      +|||+++++|+++++++
T Consensus       407 edId~~v~~l~~al~~~  423 (423)
T PRK05964        407 EELDRITDAIVEVADEL  423 (423)
T ss_pred             HHHHHHHHHHHHHHhhC
Confidence            99999999999999875

>PLN00144 acetylornithine transaminase

Probab=100.00  E-value=4.9e-67  Score=526.39  Aligned_cols=366  Identities=33%  Similarity=0.531  Sum_probs=323.6

Q ss_pred             EEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEe
Q 011777           82 IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFV  161 (477)
Q Consensus        82 ~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~  161 (477)
                      +++|+|+|+||.|||+||||.+|++++++||+||+|++|+.+|++++.+....+.++...+|+++|++..+  .++|+|+
T Consensus         1 ~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~f~   78 (382)
T PLN00144          1 FVSGKGCKLYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHVSNVYHTIPQVELAKRLVASSF--ADRVFFC   78 (382)
T ss_pred             CeeeeccEEEeCCCCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHhcCC--CCeEEEe
Confidence            46899999999999999999999999999999999999999999987765555568889999999999874  4799999


Q ss_pred             CChHHHHHHHHHHHHhccC-------------CceEEEEccCccCCcccccccccCCCCCCCCCC--CCeeeecCCCCcC
Q 011777          162 NSGTEANELAMLMARLSTG-------------NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ--GEIHHVVNPDPYH  226 (477)
Q Consensus       162 ~sGseA~~~Al~~ar~~~~-------------~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  226 (477)
                      +|||||+|.|+|+||.+++             +.+||+++++|||++.++++.++...++..+.+  +++.++++++   
T Consensus        79 ~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d---  155 (382)
T PLN00144         79 NSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGN---  155 (382)
T ss_pred             CCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCC---
Confidence            9999999999999999875             468999999999999999998876544433221  3444443322   


Q ss_pred             CCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc
Q 011777          227 GSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG  306 (477)
Q Consensus       227 ~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~  306 (477)
                                ++.+++++.   .+++++||+||+||++|+..++++|+++|+++|++||+++|+||||+||||+| .+|+
T Consensus       156 ----------~~~l~~~~~---~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g-~~~~  221 (382)
T PLN00144        156 ----------LEAARKLIQ---KGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTG-YLWA  221 (382)
T ss_pred             ----------HHHHHHhcC---CCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc-hHhh
Confidence                      477887774   36899999999999999889999999999999999999999999999999999 6888


Q ss_pred             ccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 011777          307 FETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLG  386 (477)
Q Consensus       307 ~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~  386 (477)
                      ++++++.||++||||++++|+|+|++++++++++.+....+.+||++||+++++++++|++++++++.++++++++++++
T Consensus       222 ~~~~~~~PDi~t~sK~l~~G~pig~v~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~  301 (382)
T PLN00144        222 HEAYGVEPDIMTLAKPLAGGLPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRE  301 (382)
T ss_pred             hhhcCCCCCEEEecccccCCcceEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999877778899999999999999999999988999999999999999


Q ss_pred             HHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHH
Q 011777          387 RLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFL  466 (477)
Q Consensus       387 ~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~  466 (477)
                      .|+++..+++.+.++++.|+|+|+++..          ....+.+.++++||++.+++. +++|||+||+++++++++++
T Consensus       302 ~l~~~~~~~~~~~~vrg~G~~~~l~l~~----------~~~~~~~~~~~~Gv~i~~~~~-~~~lrl~p~~~~~~~~i~~~  370 (382)
T PLN00144        302 LLRRKLGGNPHVKEVRGVGLLVGIQLDV----------PAGPLVDACRDSGLLVLTAGK-GDVVRLVPPLVISEAELEQA  370 (382)
T ss_pred             HHHHHHhhCCCceeeecCceEEEEEecC----------ccHHHHHHHHHCCeEEeecCC-CCEEEEeCCCccCHHHHHHH
Confidence            9999988888889999999999999921          124688899999999988743 58999999999999999999


Q ss_pred             HHHHHHHHhhC
Q 011777          467 VDALDYSMSKL  477 (477)
Q Consensus       467 l~~l~~~l~~l  477 (477)
                      +++|++++.++
T Consensus       371 ~~~l~~~l~~~  381 (382)
T PLN00144        371 VEILADCLPAL  381 (382)
T ss_pred             HHHHHHHHHhc
Confidence            99999998753

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=100.00  E-value=1.8e-66  Score=526.26  Aligned_cols=372  Identities=30%  Similarity=0.510  Sum_probs=326.5

Q ss_pred             cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCC
Q 011777           77 QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLK  156 (477)
Q Consensus        77 ~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~  156 (477)
                      ..|+++++|+|+|+||.|||+||||.+|+++.+|||+||+|++|+.+|++++.+....+.++...+|+++|++..+.  +
T Consensus        16 ~~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~~~--~   93 (397)
T TIGR03246        16 PAPFIPVRGEGSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGNGYTNEPVLRLAKKLVDATFA--D   93 (397)
T ss_pred             CCCceEEEeecCEEEeCCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhCCC--C
Confidence            45799999999999999999999999999999999999999999999999865544446678889999999998853  6


Q ss_pred             EEEEeCChHHHHHHHHHHHHhcc------CCceEEEEccCccCCcccccccccCCCCCCCCC--CCCeeeecCCCCcCCC
Q 011777          157 VVYFVNSGTEANELAMLMARLST------GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP--QGEIHHVVNPDPYHGS  228 (477)
Q Consensus       157 ~v~~~~sGseA~~~Al~~ar~~~------~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  228 (477)
                      +++|++||+|||+.|+|+||.++      +|.+||+++++|||++.++++.++...++..+.  ..++.+++.++     
T Consensus        94 ~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----  168 (397)
T TIGR03246        94 KVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYND-----  168 (397)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCCC-----
Confidence            99999999999999999999885      788999999999999998888876544332221  13444443222     


Q ss_pred             CCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccc
Q 011777          229 FGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE  308 (477)
Q Consensus       229 ~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~  308 (477)
                              ++++++++.    +++++||+||+++++|+++|+++||++|+++|++||+++|+||||+||||+| .+|+++
T Consensus       169 --------~~~l~~~l~----~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G-~~~a~~  235 (397)
T TIGR03246       169 --------LAAAKALIS----DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTG-ELYAYM  235 (397)
T ss_pred             --------HHHHHHHhc----cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccc-cchhhh
Confidence                    577888775    4799999999999999999999999999999999999999999999999999 788888


Q ss_pred             ccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 011777          309 TQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRL  388 (477)
Q Consensus       309 ~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L  388 (477)
                      ++++.||++|+||++++|+|+|++++++++++.+....+++||++||+++++++++|+.++++++.+++++++++++++|
T Consensus       236 ~~gv~pDi~t~~K~lggG~pigav~~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L  315 (397)
T TIGR03246       236 HYGVTPDILTSAKALGGGFPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGL  315 (397)
T ss_pred             hcCCCCCEEEeehhhhCCcceeEEEEcHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999987767888999999999999999999888889999999999999999


Q ss_pred             HHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHH
Q 011777          389 RTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVD  468 (477)
Q Consensus       389 ~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~  468 (477)
                      +++..+++.+.++++.|+++++++..+      .......+.+.|+++|+++.+.+  .+++||+||+.+|++||+++++
T Consensus       316 ~~l~~~~~~~~~vrg~G~~~~i~~~~~------~~~~~~~~~~~l~~~Gv~~~~~g--~~~lR~~p~~~~t~~~i~~~~~  387 (397)
T TIGR03246       316 EKINARYNVFSEIRGKGLLIGAVLTEA------YQGKAKQFVNAAAEEGVIALIAG--PNVVRFAPSLVISDDDIDEGLA  387 (397)
T ss_pred             HHHHhcCCCeEeeecCceEEEEEEcCc------hhhHHHHHHHHHHHCCeEEeecC--CCEEEEeCCCCCCHHHHHHHHH
Confidence            999877888899999999999998532      11235678899999999998754  4799999999999999999999


Q ss_pred             HHHHHHhh
Q 011777          469 ALDYSMSK  476 (477)
Q Consensus       469 ~l~~~l~~  476 (477)
                      +|++++.+
T Consensus       388 ~l~~~l~~  395 (397)
T TIGR03246       388 RFERAIEQ  395 (397)
T ss_pred             HHHHHHHH
Confidence            99999875

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK07046 aminotransferase; Validated

Probab=100.00  E-value=3.8e-66  Score=527.87  Aligned_cols=401  Identities=23%  Similarity=0.265  Sum_probs=327.3

Q ss_pred             CCCHHHHHHHHhhhcCCCc-cc---cc--cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhh
Q 011777           54 GPSADQVFQKRKQFLGPSI-FH---YY--QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKL  127 (477)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~-~~---~~--~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~  127 (477)
                      .|+|.+++++.+++++-+. ..   .+  ..|+++++|+|+||||.|||+||||.+++++++|||+||+|++|+.+|+++
T Consensus        27 ~~~S~~l~~ra~~~~p~g~~~~~~~~~~~~~p~~~~~a~G~~v~D~DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~  106 (453)
T PRK07046         27 HPRSRALAARAAQHLLGGVPMHWMNDWPTPFPLFVAEARGARFTDVDGHRYDDFCLGDTGAMFGHSPAPVARALAEQARR  106 (453)
T ss_pred             ChhhHHHHHHHHhhCCCCcccccccccCCCCCCeEEeeeeCEEEeCCCCEEEEecccccccccCCCCHHHHHHHHHHHHh
Confidence            4678999999999997544 21   12  468999999999999999999999999999999999999999999999998


Q ss_pred             ccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccc--cCC
Q 011777          128 LQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLT--ALN  205 (477)
Q Consensus       128 ~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~--~~~  205 (477)
                      +.+  ..+.++...+|+++|++..+  .++|+|+||||||++.|+|+||.+|||++||.|+++|||++++++...  +..
T Consensus       107 ~~~--~~~~~~~~~~lAe~l~~~~~--~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~  182 (453)
T PRK07046        107 GLT--TMLPSEDAAWVGEELARRFG--LPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRP  182 (453)
T ss_pred             CCC--CCCCCHHHHHHHHHHHHHhC--CCEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCC
Confidence            643  23568889999999999984  689999999999999999999999999999999999999987766542  111


Q ss_pred             CCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhC
Q 011777          206 TWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAG  285 (477)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g  285 (477)
                      ..+...  .+......++....+|++     ++.+++++.   .+++++||+||+++++|.++|+++||++|+++|++||
T Consensus       183 ~~~~~~--~g~~~~~~~~~~~~~~nd-----~~~l~~~l~---~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g  252 (453)
T PRK07046        183 VQRPGL--LGQVHDLTATTRVVEFND-----LAALEAALA---DGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYG  252 (453)
T ss_pred             CCCCCC--CCCCccccCceEeeCCCC-----HHHHHHHhC---CCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhC
Confidence            111111  111100011122234443     577888774   4689999999999999999999999999999999999


Q ss_pred             cEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcc---------cccccCCCCcHH
Q 011777          286 GVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQ---------KIQFNTFGGNPV  356 (477)
Q Consensus       286 illI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~---------~~~~~t~~~~~~  356 (477)
                      +++|+|||+| | |.| .....+++|+.||++||||+++||+|+|++++++++++.+..         ..+++||++||+
T Consensus       253 ~llI~DEV~t-f-r~g-~Gg~~~~~gv~PDi~t~gK~lggG~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl  329 (453)
T PRK07046        253 TLLVIDETHT-I-SSG-PGGYTRAHGLEPDFLVVGKPIAGGVPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANAL  329 (453)
T ss_pred             CEEEEEcccc-C-ccC-CcchhHHhCCCccceeehhhhcCCCcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHH
Confidence            9999999998 4 233 111236689999999999999999999999999999998752         136789999999


Q ss_pred             HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCC-----C-ccHHHHHHHH
Q 011777          357 CSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEK-----T-PAKAETAVLF  430 (477)
Q Consensus       357 ~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~-----~-~~~~~~~~~~  430 (477)
                      +|+|++++|++++++++++++++++++|+++|+++..+++.+..+++.|+++.+.+.++....     . .+......+.
T Consensus       330 ~~aa~~a~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (453)
T PRK07046        330 AMAAMRATLAEVMTEAAYAHMLALAARLAAGLRAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALH  409 (453)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHH
Confidence            999999999999888899999999999999999999899999999999999998885432110     1 1233456788


Q ss_pred             HHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          431 EKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       431 ~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ..|+++||++.+.   ++.++++|+  +|++|||++++++++++++
T Consensus       410 ~~~~~~Gv~~~~~---~~~~~~~p~--~t~~did~~~~~~~~~l~~  450 (453)
T PRK07046        410 LYLLNRGVLITPF---HNMMLVCPA--TTAADVDRLVAAFDACLGE  450 (453)
T ss_pred             HHHHHCCCEEecc---cCcEEEeCC--CCHHHHHHHHHHHHHHHHH
Confidence            8899999999863   467888876  8999999999999999875

>PRK08297 L-lysine aminotransferase; Provisional

Probab=100.00  E-value=3.8e-66  Score=527.48  Aligned_cols=382  Identities=29%  Similarity=0.428  Sum_probs=313.9

Q ss_pred             ceeEEeeeccEEEeC-CCCEEEeecCCcccccCCCCCHHHHH--HHHHHHhhccc--cc-cccCChHHHHHHHHHHhhC-
Q 011777           79 PLNIVEGKMQYLFDE-NGRRYLDAFAGIVTVSCGHCHPDVLN--AIFEQSKLLQH--AT-TIYLHHAIADFAEALASKM-  151 (477)
Q Consensus        79 p~~~~~g~G~~~~d~-dG~~ylD~~~g~~~~~lGh~~p~v~~--Av~~~l~~~~~--~~-~~~~~~~~~~l~~~La~~~-  151 (477)
                      ++.+++|+|+||||. |||+||||.+|++++++||+||+|++  |+.+|++++.+  .. ..+.++...+++++|++.. 
T Consensus        27 ~~~i~~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~~~  106 (443)
T PRK08297         27 VLDLERSQGSYLVDARTGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFARVLG  106 (443)
T ss_pred             ceEEEeccCCEEEECCCCCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHHhhcC
Confidence            355899999999995 99999999999999999999999999  99999988653  22 2456788899999999987 


Q ss_pred             CCCCCEEEEeCChHHHHHHHHHHHHhcc------------CCceEEEEccCccCCcccccccccCCCC-CCCCCCCCeee
Q 011777          152 PGNLKVVYFVNSGTEANELAMLMARLST------------GNLGMIALRNAYHGGSSGTIGLTALNTW-KYPIPQGEIHH  218 (477)
Q Consensus       152 ~~~~~~v~~~~sGseA~~~Al~~ar~~~------------~~~~ii~~~~~yhG~~~~~~~~~~~~~~-~~~~~~~~~~~  218 (477)
                      |.+.++|+|+|||+||||.|+|+||.|+            +|.+||+++++|||++.+++++++.... +...+..+..+
T Consensus       107 p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~  186 (443)
T PRK08297        107 DPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPR  186 (443)
T ss_pred             CCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccc
Confidence            6667899999999999999999999873            2578999999999999999999864322 11111112222


Q ss_pred             ecCCCCcCCCCC-CC-------HHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEE
Q 011777          219 VVNPDPYHGSFG-SD-------AARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA  290 (477)
Q Consensus       219 ~~~~~~~~~~~~-~~-------~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  290 (477)
                      ++.|.. ..++. .+       ...+++++++++.. +++++++||+||+|+++|+++|+++||++|+++|++||+++|+
T Consensus       187 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~  264 (443)
T PRK08297        187 IDNPKL-RFPLPGEDLEEVEALEAEALAQARAAFER-HPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIF  264 (443)
T ss_pred             cCCCCC-CCCCcccccchhhHHHHHHHHHHHHHHHh-CCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence            222222 11110 00       12245667777763 4578999999999999999999999999999999999999999


Q ss_pred             cCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhh----c-ccccccCCCCcHHHHHHHHHHH
Q 011777          291 DEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVM----A-QKIQFNTFGGNPVCSAGGLAVL  365 (477)
Q Consensus       291 DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~----~-~~~~~~t~~~~~~~~aaa~a~l  365 (477)
                      |||||||||+| .+|+++++++.||++||||++.    +|++++.+++.+.+    . ...+++||++||++|++++++|
T Consensus       265 DEV~tGfGRtG-~~~a~~~~gv~PDiv~~gK~l~----~~a~l~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L  339 (443)
T PRK08297        265 DEVQTGVGLTG-TAWAYQQLGVRPDIVAFGKKTQ----VCGIMAGRRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRIL  339 (443)
T ss_pred             echhhccCccc-hHHHHHhcCCCCCEEEeccccc----ccceecchHHHHhhhhhccCccccCCCCCccHHHHHHHHHHH
Confidence            99999999999 7999999999999999999974    45666666654322    1 2247899999999999999999


Q ss_pred             HhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCce-eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC
Q 011777          366 RVIDKERRQAHCADVGSHLLGRLRTLQERHDIIG-DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG  444 (477)
Q Consensus       366 ~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~-~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~  444 (477)
                      ++++++++++++++++++++++|+++..+++.+. ++||.|+|+++++.+        ......+.+.|+++||++.+.+
T Consensus       340 ~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~G~~~~i~~~~--------~~~~~~~~~~l~~~Gvl~~~~~  411 (443)
T PRK08297        340 EVIEEDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMCAFDLPT--------TADRDEVIRRLWEEGVLVLPCG  411 (443)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeeccceEEEEEecC--------HHHHHHHHHHHHHCCEEEecCC
Confidence            9999899999999999999999999988888665 999999999999942        2235678889999999998764


Q ss_pred             CCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          445 LHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       445 ~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                        .+.+||+||+++|++|||+++++|++++.++
T Consensus       412 --~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~  442 (443)
T PRK08297        412 --ERSIRFRPALTVTTEEIDAAIDALRRALPEV  442 (443)
T ss_pred             --CCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence              4789999999999999999999999998764

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=4.5e-66  Score=520.85  Aligned_cols=368  Identities=29%  Similarity=0.506  Sum_probs=315.1

Q ss_pred             cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCC
Q 011777           77 QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLK  156 (477)
Q Consensus        77 ~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~  156 (477)
                      ..|+++++++|+|+||.|||+||||.+|++++++||+||+|++|+.+|++++.+....+.++...+|+++|.+..+  .+
T Consensus        17 ~~~~~~~~~~G~~~~d~dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~   94 (395)
T PRK03715         17 RPDIVFTHGKGSWLYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPSPAFYNEPMAKLAGLLTQHSC--FD   94 (395)
T ss_pred             CCCceEEeeecCEEEECCCCEEEECCcChhhccCCCCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHhhccC--CC
Confidence            3468999999999999999999999999999999999999999999999987665555567888999999998753  57


Q ss_pred             EEEEeCChHHHHHHHHHHHHhcc-----CCceEEEEccCccCCcccccccccCCCCCCCCCC--CCeeeecCCCCcCCCC
Q 011777          157 VVYFVNSGTEANELAMLMARLST-----GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ--GEIHHVVNPDPYHGSF  229 (477)
Q Consensus       157 ~v~~~~sGseA~~~Al~~ar~~~-----~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  229 (477)
                      +++|++||+|||+.|+|++|.++     ++.+||.++++|||++.+++++++...++....+  .++.+++        +
T Consensus        95 ~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~--------~  166 (395)
T PRK03715         95 KVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAE--------L  166 (395)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeC--------C
Confidence            89999999999999999999773     6688999999999999999998875544332211  2333322        2


Q ss_pred             CCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccc
Q 011777          230 GSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET  309 (477)
Q Consensus       230 ~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~  309 (477)
                      ++     ++++++++.    +++++||+||+++++|+++|+++|+++|+++|++||+++|+||||+||||+| ++|++++
T Consensus       167 ~d-----~~~l~~~l~----~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG-~~~a~~~  236 (395)
T PRK03715        167 ND-----IASVEKLIT----DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTG-TLFAYEL  236 (395)
T ss_pred             ch-----HHHHHHHcC----CCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCc-chhhHhh
Confidence            21     467777775    4789999999999999999999999999999999999999999999999999 7899999


Q ss_pred             cCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 011777          310 QGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLR  389 (477)
Q Consensus       310 ~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~  389 (477)
                      +++.||++|+||++++|+|+|++++++++.. +....+++||++||+++++++++|++++++++.+++++++++++++|+
T Consensus       237 ~gv~PDi~t~gK~lg~G~p~~av~~~~~i~~-~~~~~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~l~~~L~  315 (395)
T PRK03715        237 SGIEPDIMTLGKGIGGGVPLAALLAKAEVAV-FEAGDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKLL  315 (395)
T ss_pred             cCCCCceeeehhhhhCCcceEEEEEcccccc-ccCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999863 444457899999999999999999999988999999999999999999


Q ss_pred             HHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc---CceeeccCCCCCEEEEeCCCCCcHHHHHHH
Q 011777          390 TLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLREL---GVLVGKGGLHGNVFRIKPPMCFTKDDADFL  466 (477)
Q Consensus       390 ~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~---Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~  466 (477)
                      ++..+++ +.++||.|+|+++++..+         ....+.+.+.+.   ||++.+..  .+.+||+||+.+|++||+++
T Consensus       316 ~l~~~~~-i~~vrG~Glm~~i~l~~~---------~~~~~~~~~~~~~~~Gi~~~~~~--~~~lR~~p~l~~t~~ei~~~  383 (395)
T PRK03715        316 ELSEERG-LEGERGEGLLRALLLGKD---------IGPQIVEKARDMQPDGLLLNAPR--PNLLRFMPALNVTTEEIDQM  383 (395)
T ss_pred             HHhhcCC-cCeEEcceeEEEEEecCc---------hHHHHHHHHHhccCCCEEEeecC--CCEEEEeCCcccCHHHHHHH
Confidence            9988777 677999999999999532         123444445555   99987543  58999999999999999999


Q ss_pred             HHHHHHHHhhC
Q 011777          467 VDALDYSMSKL  477 (477)
Q Consensus       467 l~~l~~~l~~l  477 (477)
                      +++|+++++++
T Consensus       384 ~~~l~~~l~~~  394 (395)
T PRK03715        384 IAMLRSVLDKL  394 (395)
T ss_pred             HHHHHHHHHhh
Confidence            99999998753

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=3.4e-65  Score=517.39  Aligned_cols=405  Identities=22%  Similarity=0.290  Sum_probs=328.7

Q ss_pred             CCHHHHHHHHhhhcCCCcc---ccc----cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhh
Q 011777           55 PSADQVFQKRKQFLGPSIF---HYY----QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKL  127 (477)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~---~~~----~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~  127 (477)
                      |++.+++++.+++++.+..   ..+    ..|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|+++
T Consensus         5 ~~s~~l~~~a~~~~p~g~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~   84 (433)
T PRK00615          5 QEMTHTFSEACQYFPGGVNSPVRACRSVGITPPIVSSASGDIFIDSLGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAER   84 (433)
T ss_pred             HHHHHHHHHHHhhCCCCcCCCcccccccCCCCceEEEeeeCEEEECCCCEEEEcccchhccccCCCCHHHHHHHHHHHHh
Confidence            5678999999999975432   122    468999999999999999999999999999999999999999999999998


Q ss_pred             ccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCc---ccccccccC
Q 011777          128 LQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGS---SGTIGLTAL  204 (477)
Q Consensus       128 ~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~---~~~~~~~~~  204 (477)
                      +..  ..+.++...+|+++|.+.+|...++|+|++||+||++.|+|+||.+|||.+||.++++|||++   .++++.++.
T Consensus        85 ~~~--~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~  162 (433)
T PRK00615         85 GTS--YGLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSET  162 (433)
T ss_pred             CCC--CCCCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCC
Confidence            643  235678899999999999986567999999999999999999999999999999999999998   444444432


Q ss_pred             CCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHh
Q 011777          205 NTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKA  284 (477)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~  284 (477)
                      ........ .+ ...+.+.....++++     .++++++++.. .+++++||+||+++++|.++|+++||++|+++|++|
T Consensus       163 ~~~~~~~~-~~-~~~~~~~~~~~~~~d-----~~~l~~~l~~~-~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~  234 (433)
T PRK00615        163 SLDTLTHL-VD-TDLAHPLTLSLPYND-----FQIFQTVMNSL-GHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRT  234 (433)
T ss_pred             CcCcCCCC-CC-CCCCCCCeEeCCCCC-----HHHHHHHHHhc-CCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHc
Confidence            11110000 00 000001111123332     47788888633 367999999999999999999999999999999999


Q ss_pred             CcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhccc---ccccCCCCcHHHHHHH
Q 011777          285 GGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGG  361 (477)
Q Consensus       285 gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~---~~~~t~~~~~~~~aaa  361 (477)
                      |+++|+||||+|| |+| .+++++++++.||++||||++|||+|+|++++++++++.+...   .+++||++||++|+|+
T Consensus       235 g~llI~DEv~tG~-R~G-~~ga~~~~gv~PDi~~~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~  312 (433)
T PRK00615        235 GSLSIMDEVVTGF-RVA-QGGAAAIYHVKPDITVYGKILGGGLPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAG  312 (433)
T ss_pred             CCEEEEEcccccc-ccc-HhHHHHhcCCCCCeEEEcccccCCcceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHH
Confidence            9999999999999 899 6888899999999999999999999999999999999988532   3678999999999999


Q ss_pred             HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCC-ceeeeccceeEEEEEeeCCCC--C---CccHHHHHHHHHHHHH
Q 011777          362 LAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDI-IGDVRGRGLMVGMELVTDRKE--K---TPAKAETAVLFEKLRE  435 (477)
Q Consensus       362 ~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~-~~~v~g~g~~~~i~~~~~~~~--~---~~~~~~~~~~~~~l~~  435 (477)
                      +++|++++++++++++++++++++++|+++..+++. +..++ .|+|+++++..+..+  +   ..+......+.+.|.+
T Consensus       313 la~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~v~~~r-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  391 (433)
T PRK00615        313 KASINLCREQGFYTQLSTLEQNFLSPIEEMIRSQGFPVSLVR-YGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFS  391 (433)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEe-eceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHH
Confidence            999999988889999999999999999998777443 66677 899999999754321  0   1123345678999999


Q ss_pred             cCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          436 LGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       436 ~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +||++.+......    ..+..||++|||++++++++++++
T Consensus       392 ~Gv~~~~~~~~~~----~ls~~ht~~did~~~~a~~~~~~~  428 (433)
T PRK00615        392 KGVYLSPSPFEAS----FLSSAHSMENLDYAQNVLIDSLEK  428 (433)
T ss_pred             CCeeecCcccccc----ceecCCCHHHHHHHHHHHHHHHHH
Confidence            9999987532222    346889999999999999999875

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=6.3e-66  Score=487.67  Aligned_cols=378  Identities=31%  Similarity=0.493  Sum_probs=319.4

Q ss_pred             cccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCC-C
Q 011777           75 YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMP-G  153 (477)
Q Consensus        75 ~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~-~  153 (477)
                      +.+.|+++.+++|+++||.||++||||++++++..+||+||+|.+|+.+|+.++.|+...+......+++++|.+... .
T Consensus        35 ~a~~pv~~~~gkg~kl~D~~g~EyiD~~ssw~~~~~Ghanpev~ral~~q~~k~~hs~~~~~t~eav~l~~~l~~~~~~~  114 (433)
T KOG1401|consen   35 YARYPVVIESGKGSKLFDPDGKEYIDFTSSWAVTILGHANPEVARALAEQAKKLGHSSNGYFTLEAVELEEVLSAVLGKG  114 (433)
T ss_pred             cCCCceeeecceeeeeecCCcceeeeeccceeccccCCCCHHHHHHHHHHHhhheeccCccccHHHHHHHHHHHhcccCC
Confidence            346689999999999999999999999999999999999999999999999999998877766668899999998873 3


Q ss_pred             CCCEEEEeCChHHHHHHHHHHHHhccCCce------EEEEccCccCCcccccccccCCCCCCCCCC--CCeeeecCCCCc
Q 011777          154 NLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRNAYHGGSSGTIGLTALNTWKYPIPQ--GEIHHVVNPDPY  225 (477)
Q Consensus       154 ~~~~v~~~~sGseA~~~Al~~ar~~~~~~~------ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  225 (477)
                      ..++|+|+||||||||.|||+||+.+..+.      +|.|+++|||.+.++++.++.+.|+.+..+  +++...      
T Consensus       115 ~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~------  188 (433)
T KOG1401|consen  115 SAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTA------  188 (433)
T ss_pred             CccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeec------
Confidence            468999999999999999999999875544      999999999999999999988777665433  333333      


Q ss_pred             CCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCc
Q 011777          226 HGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW  305 (477)
Q Consensus       226 ~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~  305 (477)
                        .+++     ..+++++++. ++++++|||+||+||+||.++++++||..|+++|+++|+++|+|||||||||+| ..|
T Consensus       189 --~ynd-----~t~l~k~~~~-h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g-~~~  259 (433)
T KOG1401|consen  189 --EYND-----STALEKLFES-HKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLG-YGW  259 (433)
T ss_pred             --ccCC-----HHHHHHHHHh-CCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccc-hHH
Confidence              2232     4788888873 456899999999999999999999999999999999999999999999999999 899


Q ss_pred             cccccCCCcceeeecccccCccceEEEEeCHHHHHhhccccc---ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 011777          306 GFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQ---FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGS  382 (477)
Q Consensus       306 ~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~---~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~  382 (477)
                      ++++++++|||.|++|.++||+|+|++++++++++.+....+   ++||++||++|.++..+|+.+.+.++++++.+.++
T Consensus       260 a~e~~~~~PDI~t~aK~L~gGlPigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k  339 (433)
T KOG1401|consen  260 AQEYFGVTPDITTVAKPLGGGLPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGK  339 (433)
T ss_pred             HHHHhCcCCcceeehhhccCCceeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999987655   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCceee-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--CCCEEEEeC--CCC
Q 011777          383 HLLGRLRTLQERHDIIGDV-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--HGNVFRIKP--PMC  457 (477)
Q Consensus       383 ~l~~~L~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p--~~~  457 (477)
                      .|+++|.+...+++..... +++|+++++++..+.          ..+.+...++|.++.+.+.  ....+||.|  .++
T Consensus       340 ~L~~~l~e~~~~~~~~i~g~~grgl~ig~~~~~p~----------~~~~d~~~~~~ll~~~~~~~~~~~gv~i~P~~~l~  409 (433)
T KOG1401|consen  340 ELRKLLDEYLKKTPNSICGGVGRGLVIGFEFEGPV----------YKFADAAREQGLLILTLGKGLLEEGVRIAPIYLLT  409 (433)
T ss_pred             HHHHHHHHHhccCCCceeeeeeeEEEEEEEEeech----------hhhhhhhhhhhHHHHHHhcccccceEEEecccccc
Confidence            9999999988887644333 889999999986532          2233333344444433221  113467777  444


Q ss_pred             C--cHHHHHHHHHHHHHHHhhC
Q 011777          458 F--TKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       458 ~--t~e~i~~~l~~l~~~l~~l  477 (477)
                      +  ++|.++++++++++.++++
T Consensus       410 ~~~~~E~i~~~l~i~~~~l~~~  431 (433)
T KOG1401|consen  410 VEHTPEVIQRLLTILEKVLSAL  431 (433)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHh
Confidence            4  4899999999999988753

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=100.00  E-value=3.1e-65  Score=518.74  Aligned_cols=372  Identities=29%  Similarity=0.494  Sum_probs=324.9

Q ss_pred             cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCC
Q 011777           77 QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLK  156 (477)
Q Consensus        77 ~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~  156 (477)
                      +.|+.+++|+|+||||.|||+||||.+|+++++|||+||+|++|+.+|++++.+....+.++...+|+++|++..+  .+
T Consensus        20 ~~~~~~~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~   97 (406)
T PRK12381         20 PAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATF--AD   97 (406)
T ss_pred             CCCceEEEeecCEEEeCCCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcccccCccCCHHHHHHHHHHHhhCC--CC
Confidence            4578999999999999999999999999999999999999999999999986554445667888999999999874  47


Q ss_pred             EEEEeCChHHHHHHHHHHHHhcc------CCceEEEEccCccCCcccccccccCCCCCCCCCC--CCeeeecCCCCcCCC
Q 011777          157 VVYFVNSGTEANELAMLMARLST------GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ--GEIHHVVNPDPYHGS  228 (477)
Q Consensus       157 ~v~~~~sGseA~~~Al~~ar~~~------~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  228 (477)
                      +++|++||+|||+.|+|+||.++      ++.+|+.++++|||++.+++++++.+.++....+  .++.+++        
T Consensus        98 ~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  169 (406)
T PRK12381         98 RVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAA--------  169 (406)
T ss_pred             eEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeC--------
Confidence            99999999999999999999885      7889999999999999999888876544432211  2333332        


Q ss_pred             CCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccc
Q 011777          229 FGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE  308 (477)
Q Consensus       229 ~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~  308 (477)
                      +++     ++++++++.    +++++||+||+++++|+++++++|+++|+++|++||++||+||||+||||+| .+|+++
T Consensus       170 ~~d-----~~~l~~~l~----~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G-~~~~~~  239 (406)
T PRK12381        170 YND-----LNSASALID----DQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTG-ELYAYM  239 (406)
T ss_pred             CCC-----HHHHHHhcc----CCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCc-chhhhH
Confidence            222     477887775    4799999999999999999999999999999999999999999999999999 678888


Q ss_pred             ccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 011777          309 TQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRL  388 (477)
Q Consensus       309 ~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L  388 (477)
                      ++++.||++||||++++|+|+|++++++++++.+....+.+||++||+++++++++|+.++++++.+++++++++++++|
T Consensus       240 ~~~v~pDi~t~sK~l~gG~~ig~~~~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L  319 (406)
T PRK12381        240 HYGVTPDVLTTAKALGGGFPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERL  319 (406)
T ss_pred             hhCCCCCEEEehhhhhCCCceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999988777889999999999999999999988889999999999999999


Q ss_pred             HHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHH
Q 011777          389 RTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVD  468 (477)
Q Consensus       389 ~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~  468 (477)
                      +++..+++.+.++++.|+|+++++..+      .......+.+.|+++||++.+.+  .+++||+||+++|+++|+++++
T Consensus       320 ~~l~~~~~~~~~vrg~Gl~~~~~l~~~------~~~~~~~~~~~l~~~Gv~v~~~g--~~~lRl~p~~~~t~~~i~~~~~  391 (406)
T PRK12381        320 NTINARYGLFSEIRGLGLLIGCVLNAE------YAGKAKQISQEAAKAGVMVLIAG--PNVVRFAPALNISEEEITTGLD  391 (406)
T ss_pred             HHHHhhCCCEEEEecCeEEEEEEecCc------hhhHHHHHHHHHHHCCcEEeeCC--CCEEEEeCCccCCHHHHHHHHH
Confidence            999777888889999999999998532      11235678899999999997654  4799999999999999999999


Q ss_pred             HHHHHHhh
Q 011777          469 ALDYSMSK  476 (477)
Q Consensus       469 ~l~~~l~~  476 (477)
                      +|++++++
T Consensus       392 ~l~~~l~~  399 (406)
T PRK12381        392 RFARACER  399 (406)
T ss_pred             HHHHHHHH
Confidence            99998864

>PLN02624 ornithine-delta-aminotransferase

Probab=100.00  E-value=2.9e-64  Score=518.36  Aligned_cols=395  Identities=28%  Similarity=0.466  Sum_probs=337.2

Q ss_pred             CHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccccc
Q 011777           56 SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY  135 (477)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~  135 (477)
                      .++++++...++..+.   +++.|+++++++|+|+||.||++||||++|++++++||+||+|++|+++|++++.+....+
T Consensus        38 ~~~~~~~~~~~~~~~~---~~~~p~~~~~a~G~~l~d~dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~~~~~~~  114 (474)
T PLN02624         38 SSAHLIELEEKYSAHN---YHPIPVVFSRAKGSRIWDPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSSRAF  114 (474)
T ss_pred             chHHHHHHHHHhhccc---cCCCCceEEeeeeCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhcCCccccc
Confidence            3467888777775543   3356899999999999999999999999999999999999999999999999977655556


Q ss_pred             CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhcc--------CCceEEEEccCccCCcccccccccCCCC
Q 011777          136 LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLST--------GNLGMIALRNAYHGGSSGTIGLTALNTW  207 (477)
Q Consensus       136 ~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~--------~~~~ii~~~~~yhG~~~~~~~~~~~~~~  207 (477)
                      .++...+|+++|+++++  .++++|+|||+|||+.|||+||.++        ++..||.+.++|||++.+++++++.+.+
T Consensus       115 ~~~~~~~la~~L~~~~~--~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~  192 (474)
T PLN02624        115 YNDKFPEFAEYLTSMFG--YDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEA  192 (474)
T ss_pred             CCHHHHHHHHHHHhhcC--CCeEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccc
Confidence            78889999999999984  5799999999999999999999863        3457999999999999999998875544


Q ss_pred             CCCCC--CCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhC
Q 011777          208 KYPIP--QGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAG  285 (477)
Q Consensus       208 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g  285 (477)
                      +..+.  .+++.++++        ++     .+.++++++. +.+++++||+||+++++|.+.++++||++|+++|++||
T Consensus       193 ~~~~~~~~~~~~~~~~--------~d-----~~~l~~~l~~-~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~g  258 (474)
T PLN02624        193 TRGFGPLLPGHLKVDF--------GD-----LDALEKIFEE-DGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHN  258 (474)
T ss_pred             cccCCCCCCCceEeCC--------CC-----HHHHHHHHHh-CCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence            33221  134444432        21     4778888863 34689999999999999999999999999999999999


Q ss_pred             cEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHH
Q 011777          286 GVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAV  364 (477)
Q Consensus       286 illI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~  364 (477)
                      +++|+||||+||||+| .+|+++++++.||++++||++++| +|+|++++++++++.+....+++||++||++++++.++
T Consensus       259 illI~DEv~tG~GrtG-~~~a~~~~~i~pDiv~lsK~lggG~~pigav~~~~~i~~~~~~~~~~~T~~g~pl~~aaa~aa  337 (474)
T PLN02624        259 VLMIADEIQTGLARTG-KMLACDWEEVRPDVVILGKALGGGVIPVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAA  337 (474)
T ss_pred             CEEEEeccccCcCcCc-chhhHHhcCCCCCEEEecccccCCCCcceeeeecHHHHhHhccCCcCCCCCCCHHHHHHHHHH
Confidence            9999999999999999 788888899999999999999987 89999999999998887777889999999999999999


Q ss_pred             HHhhchhhHHHHHHHHHHHHHHHHHHHHHhCC-CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeecc
Q 011777          365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHD-IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG  443 (477)
Q Consensus       365 l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~-~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~  443 (477)
                      |+.++++++.+++.+++++++++|.++..+++ .+.++++.|+|+++++..+.    .......++.+.|+++||++.++
T Consensus       338 Le~l~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~l~~~~----~~~~~a~~~~~~L~e~GV~v~p~  413 (474)
T PLN02624        338 LQVVQDEKLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAVVLNSPK----LGPVSAYDVCLKLKERGLLAKPT  413 (474)
T ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeEEEEEEEecCCC----cChHHHHHHHHHHHhCCeEEecC
Confidence            99998888999999999999999999988887 47789999999999884321    11234567888899999999886


Q ss_pred             CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          444 GLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       444 ~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +  ++++||+||+.+|++||++++++|++++.+
T Consensus       414 ~--~~~lR~~p~l~~t~e~id~~l~~L~~~l~~  444 (474)
T PLN02624        414 H--DTIIRLAPPLSISEDELQECSKALSDVLEH  444 (474)
T ss_pred             C--CCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence            4  689999999999999999999999988753

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=100.00  E-value=2.2e-64  Score=538.54  Aligned_cols=415  Identities=20%  Similarity=0.240  Sum_probs=332.0

Q ss_pred             CCHHHHHHHHhhhcCCCcccc--c--cCceeEEeeecc----EEEeCCCC----EEEeecCCcccccCC-CCCHHHHHHH
Q 011777           55 PSADQVFQKRKQFLGPSIFHY--Y--QKPLNIVEGKMQ----YLFDENGR----RYLDAFAGIVTVSCG-HCHPDVLNAI  121 (477)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~--~--~~p~~~~~g~G~----~~~d~dG~----~ylD~~~g~~~~~lG-h~~p~v~~Av  121 (477)
                      ++++++.++..++++.....+  +  ..|.+|++++|.    |++|.||+    +|||+.+++|++++| |+||+|++|+
T Consensus       312 ~~~~~~~~~a~~~iw~Pftq~~~~~~~~~~vi~~a~G~~~~~~~~d~~G~~~~~~ylD~~sg~w~~~lG~h~~p~I~~Ai  391 (817)
T PLN02974        312 QRLQSMPKEAGEVLWWPFTQHALVPRDSVTVIDSRCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTLQPELARAV  391 (817)
T ss_pred             HHHHHHHHHHhhhccCCcccccccCCCCceEEEeeecCceeEEEECCCCCcccceEEEcchhHHHhCCCcCCCHHHHHHH
Confidence            345566777777775433221  1  246889999998    99999998    999999999999999 6899999999


Q ss_pred             HHHHhhcccccc-ccCChHHHHHHHHHHhhCCCC-CCEEEEeCChHHHHHHHHHHHHh-cc------------------C
Q 011777          122 FEQSKLLQHATT-IYLHHAIADFAEALASKMPGN-LKVVYFVNSGTEANELAMLMARL-ST------------------G  180 (477)
Q Consensus       122 ~~~l~~~~~~~~-~~~~~~~~~l~~~La~~~~~~-~~~v~~~~sGseA~~~Al~~ar~-~~------------------~  180 (477)
                      .+|+.++.|... .+.++...+|+++|.+..+.+ +++|+|++|||||||.|||+|+. ++                  +
T Consensus       392 ~~Qa~rl~hv~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~  471 (817)
T PLN02974        392 AYAAGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGDLI  471 (817)
T ss_pred             HHHHhhCCccccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCcccccccccccCC
Confidence            999999887654 357899999999999965423 68999999999999999999953 52                  3


Q ss_pred             CceEEEEccCccCCcccccccccCCCCCCCC--C--CCCeeee--------------cCCCCcCCCC-------CC----
Q 011777          181 NLGMIALRNAYHGGSSGTIGLTALNTWKYPI--P--QGEIHHV--------------VNPDPYHGSF-------GS----  231 (477)
Q Consensus       181 ~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~--~--~~~~~~~--------------~~~~~~~~~~-------~~----  231 (477)
                      |.+||.++++|||.|.+++++++.+.+...+  +  .+...++              ++|..+++..       .+    
T Consensus       472 r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  551 (817)
T PLN02974        472 ELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEV  551 (817)
T ss_pred             CCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCcccccccccccccccccccc
Confidence            7789999999999999999998754332211  1  1111222              2222222211       00    


Q ss_pred             -----C----HHHHHHHHHHHHhc----cCCCCeeEEEeccc-CCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCc
Q 011777          232 -----D----AARYAQDLQDHIDF----GTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGF  297 (477)
Q Consensus       232 -----~----~~~~~~~le~~i~~----~~~~~~a~vi~epi-~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gf  297 (477)
                           +    ...|.+.+++.|+.    ..++++++||+||+ ||.||+++++++|+++|+++|++||++||+|||+|||
T Consensus       552 f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGf  631 (817)
T PLN02974        552 FDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGL  631 (817)
T ss_pred             ccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCC
Confidence                 0    12345677777763    23578999999995 8999999999999999999999999999999999999


Q ss_pred             cCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcc------cccccCCCCcHHHHHHHHHHHHhhch
Q 011777          298 GRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQ------KIQFNTFGGNPVCSAGGLAVLRVIDK  370 (477)
Q Consensus       298 gr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~------~~~~~t~~~~~~~~aaa~a~l~~l~~  370 (477)
                      ||+| ++|+++++|+.|||+|++|+++|| +|+|++++++++++.+..      ..|++||++||++|+|++++|+++++
T Consensus       632 GRtG-~~fa~e~~gv~PDIi~~gKgLtgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~  710 (817)
T PLN02974        632 WRLG-VESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKD  710 (817)
T ss_pred             Cccc-chhhHHhcCCCCCEEeecccccCCCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHc
Confidence            9999 899999999999999999999999 699999999999998852      24889999999999999999999988


Q ss_pred             hh----HHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCcc-HHHHHHHHHHHH-HcCceeeccC
Q 011777          371 ER----RQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA-KAETAVLFEKLR-ELGVLVGKGG  444 (477)
Q Consensus       371 ~~----~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~-~~~~~~~~~~l~-~~Gv~v~~~~  444 (477)
                      ++    +.++..++++++.++|.+...+++.+.++|+.|+|++++++++... .+. ......+.+.++ ++||++++. 
T Consensus       711 ~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~-~~~~~~~a~~v~~~~~~~~Gl~~r~~-  788 (817)
T PLN02974        711 PSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSG-SGYSSLYARSVVRRLRREDGIYARPL-  788 (817)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEeeeeEEEEEEecCCcc-cccchHHHHHHHHHHHHhCCEEEEec-
Confidence            74    4455555666677777444456899999999999999999865432 222 233567888888 999999875 


Q ss_pred             CCCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          445 LHGNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       445 ~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                        +|+|++.||+.++++++++++++|++.+
T Consensus       789 --Gnvi~l~pP~~i~~e~l~~~~~~l~~~~  816 (817)
T PLN02974        789 --GNVVYLMCGPTTSPETCTRLLRKVYRRL  816 (817)
T ss_pred             --CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence              5899999999999999999999999876

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=100.00  E-value=3.1e-64  Score=513.09  Aligned_cols=394  Identities=27%  Similarity=0.426  Sum_probs=316.0

Q ss_pred             HHHHHhhhcCCCccccccCceeEEeeeccEEEeC-CCCEEEeecCCcccccCCCCCHHHH--HHHHHHHhhccc---ccc
Q 011777           60 VFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDE-NGRRYLDAFAGIVTVSCGHCHPDVL--NAIFEQSKLLQH---ATT  133 (477)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~-dG~~ylD~~~g~~~~~lGh~~p~v~--~Av~~~l~~~~~---~~~  133 (477)
                      +++...+|....   .++.++.+++|+|+||||. |||+||||.+|++++++||+||+|+  +|+.+|++++.+   ...
T Consensus         4 ~~~~~~~~~~~~---~~p~~~~~~~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~   80 (431)
T TIGR03251         4 VHEVLSRHMLTD---GFDLVLDLDRSRGSVLVDARDGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSNS   80 (431)
T ss_pred             HHHHHHHHhhcc---CCceeeEEEeccCCEEEECCCCCChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhhhcccccC
Confidence            455555555322   1222344699999999996 9999999999999999999999999  999999998643   222


Q ss_pred             ccCChHHHHHHHHHHhhC-CCCCCEEEEeCChHHHHHHHHHHHHhccC------------CceEEEEccCccCCcccccc
Q 011777          134 IYLHHAIADFAEALASKM-PGNLKVVYFVNSGTEANELAMLMARLSTG------------NLGMIALRNAYHGGSSGTIG  200 (477)
Q Consensus       134 ~~~~~~~~~l~~~La~~~-~~~~~~v~~~~sGseA~~~Al~~ar~~~~------------~~~ii~~~~~yhG~~~~~~~  200 (477)
                      .+.++...+++++|++.. +.++++++|+||||||||+|+|+||.|++            |.+||.|+++|||++.++++
T Consensus        81 ~~~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als  160 (431)
T TIGR03251        81 DVYTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLS  160 (431)
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhh
Confidence            356788889999999986 55678999999999999999999998863            46899999999999999999


Q ss_pred             cccCCCCCCC-CCCCCeeeecCCCCcCCCCCC---C-----HHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCc
Q 011777          201 LTALNTWKYP-IPQGEIHHVVNPDPYHGSFGS---D-----AARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAP  271 (477)
Q Consensus       201 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~  271 (477)
                      +++...++.. .+..+..+++.|.. +++++.   +     ...+++++++++.. +++++++||+||+++++|++++++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~iAavivEPv~g~~G~~~~~~  238 (431)
T TIGR03251       161 LTNTDPRKTARFPKFDWPRIDNPKL-TFPLDAPNLDQVIALEEEALRQARAAFAE-RPHDIACFIAEPIQGEGGDNHFRP  238 (431)
T ss_pred             ccCCccccccCCCCCCCccCCCCcc-cCCccccccchhhHHHHHHHHHHHHHHHh-CCCcEEEEEEeccccCCCCcCCCH
Confidence            8875433221 11112222333322 122211   1     12346667777763 457899999999999999999999


Q ss_pred             hhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhh----c-ccc
Q 011777          272 GYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVM----A-QKI  346 (477)
Q Consensus       272 ~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~----~-~~~  346 (477)
                      +||++|+++|++||++||+||||+||||+| .+|+++++|+.||++++||++    |+++++..+++.+..    . ...
T Consensus       239 ~~l~~l~~lc~~~g~llI~DEV~tG~GrtG-~~~a~~~~gv~PDi~~~gK~~----~~~g~~~~~~i~~~~~~~~~~~~~  313 (431)
T TIGR03251       239 EFLRAMRALCDEHDALLIFDEVQTGVGLTG-TAWAYQQLGVQPDIVAFGKKT----QVCGIMAGRRVDEVADNVFAVPSR  313 (431)
T ss_pred             HHHHHHHHHHHHcCCEEEEecchhccCccc-hHHHHHhcCCCCCEEEecccC----ccceEEecchHHHhhhhcccCccc
Confidence            999999999999999999999999999999 789999999999999999997    455555665543221    1 224


Q ss_pred             cccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCC-CceeeeccceeEEEEEeeCCCCCCccHHH
Q 011777          347 QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHD-IIGDVRGRGLMVGMELVTDRKEKTPAKAE  425 (477)
Q Consensus       347 ~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~-~~~~v~g~g~~~~i~~~~~~~~~~~~~~~  425 (477)
                      +.+||++||+++++++++|++++++++.+++++++++++++|+++.++++ .+.+++|.|+|+++++..        ...
T Consensus       314 ~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~--------~~~  385 (431)
T TIGR03251       314 LNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLPS--------TAD  385 (431)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCccceecccccceeEEEEeCC--------HHH
Confidence            77899999999999999999998889999999999999999999988888 889999999999999832        223


Q ss_pred             HHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          426 TAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       426 ~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      ...+.+.|+++||++.+.+  .+.+||+||+.+|++||++++++|+++
T Consensus       386 ~~~~~~~l~~~Gvl~~~~g--~~~lr~~P~l~~t~~eid~~l~~l~~~  431 (431)
T TIGR03251       386 RDEVIRQLYREGVLLLGCG--ERSIRFRPPLTVTREEIDAAIDAIRRV  431 (431)
T ss_pred             HHHHHHHHHhCCeEEecCC--CCeEEEECCccCCHHHHHHHHHHHHhC
Confidence            5678899999999998754  478999999999999999999999863

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=100.00  E-value=5.8e-63  Score=504.74  Aligned_cols=414  Identities=30%  Similarity=0.472  Sum_probs=352.4

Q ss_pred             HHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccc-c
Q 011777           57 ADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI-Y  135 (477)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~-~  135 (477)
                      .+++.++.+++.+.+...  ..|+++++++|+||||+||++||||.+|++++++||+||+|.+++.+|++++.+.... +
T Consensus         4 ~~~~~~~~~~~~~~~~~~--~~p~~~~~~~G~~l~d~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~~~~~~~~   81 (425)
T PRK08088          4 NKSLMQRRSAAVPRGVGQ--IHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVL   81 (425)
T ss_pred             HHHHHHHHHHhhccccCC--CCCceEEeeeeCEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCCCcccccc
Confidence            356777776666544322  3489999999999999999999999999999999999999999999999987654332 3


Q ss_pred             CChHHHHHHHHHHhhCCCCC-CEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCC-CCCCCC--
Q 011777          136 LHHAIADFAEALASKMPGNL-KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALN-TWKYPI--  211 (477)
Q Consensus       136 ~~~~~~~l~~~La~~~~~~~-~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~~~~--  211 (477)
                      .++...+|+++|++..+.+. ++++|++||+||++.|+|+||.++++.+||.++++|||.+.++++.++.. .+....  
T Consensus        82 ~~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~  161 (425)
T PRK08088         82 AYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGL  161 (425)
T ss_pred             CCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCC
Confidence            46778899999999887654 69999999999999999999999999999999999999999999887532 122222  


Q ss_pred             CCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc-cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEE
Q 011777          212 PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF-GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA  290 (477)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~-~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  290 (477)
                      ...++.++++|..++.   .+...++++++++++. ..++++++||+||+++++|.+.++++++++|+++|++||+++|+
T Consensus       162 ~~~~~~~~~~p~~~~~---~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~  238 (425)
T PRK08088        162 MPGHVYRALYPCPLHG---VSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIA  238 (425)
T ss_pred             CCCCcEEcCCCccccC---ccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence            1245555555554431   1223346678888752 23578999999999999999999999999999999999999999


Q ss_pred             cCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch
Q 011777          291 DEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK  370 (477)
Q Consensus       291 DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~  370 (477)
                      ||+|+||||+| .+++++..++.||+.+|||++++|+|+||+++++++++.+....+.+|+++||+.++++.++|+.++.
T Consensus       239 Dev~~g~g~~g-~~~~~~~~~~~pdi~s~sK~l~~G~rig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~  317 (425)
T PRK08088        239 DEVQTGAGRTG-TLFAMEQMGVAADLTTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQ  317 (425)
T ss_pred             eccccCCCcCc-chhHHhhcCCCCCEEEEeccccCCCcceeeEecHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHh
Confidence            99999999999 67788888999999999999999999999999999999988777889999999999999999999988


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEE
Q 011777          371 ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVF  450 (477)
Q Consensus       371 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~i  450 (477)
                      +++++++++.++++++.|.++..+++.+..++|.|+|+|+++..+...+.|.......+.+.|.++||++.+++.++++|
T Consensus       318 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~~~~i  397 (425)
T PRK08088        318 ENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPYYNVL  397 (425)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCCCCEE
Confidence            89999999999999999999988888888999999999999976544445655667889999999999988766667999


Q ss_pred             EEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          451 RIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       451 Ri~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ||+|++.++++||++++++|++++.+
T Consensus       398 Rl~~~~~~t~~ei~~~i~~l~~~l~~  423 (425)
T PRK08088        398 RILVPLTIEDAQIRQGLEIIAQCFDE  423 (425)
T ss_pred             EEECCCCcCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999865

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=100.00  E-value=1.1e-63  Score=508.14  Aligned_cols=405  Identities=25%  Similarity=0.362  Sum_probs=331.8

Q ss_pred             CCHHHHHHHHhhhcCCCc-ccccc-CceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccc
Q 011777           55 PSADQVFQKRKQFLGPSI-FHYYQ-KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT  132 (477)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~-~~~~~-~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~  132 (477)
                      |+.+++++...++++... ..... .++.+++++|+|+||.|||+||||++|+++++|||+||+|++|+.+|++++.+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~   81 (427)
T TIGR00508         2 PDTASLLAFDQRHIWHPYTSMSSPLPVYPVESADGVELTLDDGRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSHVM   81 (427)
T ss_pred             CChHHHHhccccccccCccCccccCCCceEEeeeeeEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcc
Confidence            344556665444443211 11112 2467899999999999999999999999999999999999999999999876443


Q ss_pred             c-ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhcc------CCceEEEEccCccCCcccccccccCC
Q 011777          133 T-IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLST------GNLGMIALRNAYHGGSSGTIGLTALN  205 (477)
Q Consensus       133 ~-~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~------~~~~ii~~~~~yhG~~~~~~~~~~~~  205 (477)
                      . .+.++...+++++|++.+|.++++++|++||+||++.|+|+||.++      +|.+||+|+++|||++.+++++++..
T Consensus        82 ~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~  161 (427)
T TIGR00508        82 FGGFTHKPAIELCQKLVKMTPNALDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPE  161 (427)
T ss_pred             ccccCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCc
Confidence            3 3467888999999999998878899999999999999999999874      57899999999999999999887642


Q ss_pred             C-CCCCCC--CCCeeeecCCCCc-CCCCCCCHHHHHHHHHHHHhccCCCCeeEEEeccc-CCCCCeeeCCchhHHHHHHH
Q 011777          206 T-WKYPIP--QGEIHHVVNPDPY-HGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDI  280 (477)
Q Consensus       206 ~-~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi-~~~~G~~~~~~~~l~~l~~l  280 (477)
                      . ++....  .+++..++.|... ..+++   ..+++++++++... .+++++||+||+ +++||+++++++||++|+++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~---~~~~~~l~~~l~~~-~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~l  237 (427)
T TIGR00508       162 NSMHSLYKGYLPEQIFAPAPQNRFDEEWN---EEAITPLAKLMELH-SDEIAAVILEPIVQGAGGMRFYHPTYLKRVQAL  237 (427)
T ss_pred             ccccccccccCCCCeEcCCCCccccchhH---HHHHHHHHHHHHhc-CCcEEEEEEechhcCcCCcccCCHHHHHHHHHH
Confidence            1 111111  1234444444321 11111   12356777777632 467999999997 99999999999999999999


Q ss_pred             HHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhccc-----ccccCCCCc
Q 011777          281 VRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK-----IQFNTFGGN  354 (477)
Q Consensus       281 ~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~-----~~~~t~~~~  354 (477)
                      |++||+++|+||||+||||+| .+|+++++++.||++++||+++|| +|++++++++++++.+...     .+++||++|
T Consensus       238 c~~~~~llI~DEv~tG~Gr~G-~~~~~~~~~v~pDi~~~gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~  316 (427)
T TIGR00508       238 CKQYDILLIADEIATGFGRTG-KLFACEHAGVVPDILCVGKALTGGYMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGN  316 (427)
T ss_pred             HHHcCCEEEEeccccCCCcCC-ccchhhhcCCCCCEEEechhhhcCcccceEEEEcHHHHHHHhcCCCCccccCCCCCcC
Confidence            999999999999999999999 788899999999999999999999 5999999999999988642     377899999


Q ss_pred             HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHH
Q 011777          355 PVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR  434 (477)
Q Consensus       355 ~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~  434 (477)
                      |+++++++++|++++++++.+++++++++|+++|+++. +++.+.+++|.|+++++++..+.        ....+.+.|+
T Consensus       317 p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~-~~~~i~~vrg~G~~~~i~~~~~~--------~~~~~~~~l~  387 (427)
T TIGR00508       317 PLACAVAEASLAILLEGEWQKQVSAIENQLKRELSPLR-KNPVVKDVRVLGAIGVVEMYKPV--------NVEELQKKFV  387 (427)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh-cCCCEEeEeccccEEEEEECCcc--------CHHHHHHHHH
Confidence            99999999999999888999999999999999999985 46667899999999999995321        1356889999


Q ss_pred             HcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          435 ELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       435 ~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ++||++.+.   ++.+|++||+++|++|||+++++|++++++
T Consensus       388 ~~Gv~~~~~---~~~l~~~ppl~~t~~~id~~~~~l~~~l~~  426 (427)
T TIGR00508       388 EQGVWIRPF---GKLIYVMPPYIITTEQLQKLTAALIEALHE  426 (427)
T ss_pred             HCCeEEEec---CCEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence            999999764   468999999999999999999999999864

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=100.00  E-value=1.9e-63  Score=504.89  Aligned_cols=382  Identities=27%  Similarity=0.492  Sum_probs=327.2

Q ss_pred             CHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccccc
Q 011777           56 SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY  135 (477)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~  135 (477)
                      ++++++++..+++.+.   +.+.|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+....+
T Consensus         3 ~~~~~~~~~~~~~~~~---~~~~p~~~~~~~G~~l~d~~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~   79 (396)
T PRK04073          3 KSEKIIELTNHYGAHN---YHPLPIVISEAEGVWVKDPEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTSRAF   79 (396)
T ss_pred             hHHHHHHHHHHhcccc---cCCCCceEEeeeecEEEECCCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhcccccccc
Confidence            4568888877775443   2356899999999999999999999999999999999999999999999999876654445


Q ss_pred             CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc--------cCCceEEEEccCccCCcccccccccCCCC
Q 011777          136 LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS--------TGNLGMIALRNAYHGGSSGTIGLTALNTW  207 (477)
Q Consensus       136 ~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~--------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~  207 (477)
                      .++...+|+++|+++.+.  ++++|++||+|||+.|||+||.+        +++++||.++++|||++.+++++++.+.+
T Consensus        80 ~~~~~~~l~~~l~~~~~~--~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~  157 (396)
T PRK04073         80 HSDQLGPWYEKVAKLTGK--DMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEY  157 (396)
T ss_pred             CCHHHHHHHHHHHhcCCC--CeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCccc
Confidence            678889999999998753  69999999999999999999987        57889999999999999999888765443


Q ss_pred             CCCCC--CCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhC
Q 011777          208 KYPIP--QGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAG  285 (477)
Q Consensus       208 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g  285 (477)
                      +....  .+++.+++.        ++     ++++++.+.    +++++||+||++|++|.+.++++||++|+++|++||
T Consensus       158 ~~~~~~~~~~~~~~~~--------~d-----~~~l~~~i~----~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g  220 (396)
T PRK04073        158 KRGFGPMLPGIKKIPY--------GD-----LEALKAAIT----PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEEN  220 (396)
T ss_pred             ccCCCCCCCCceEeCC--------CC-----HHHHHHhcc----cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence            32221  134444432        21     477777775    468999999999999999999999999999999999


Q ss_pred             cEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHH
Q 011777          286 GVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAV  364 (477)
Q Consensus       286 illI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~  364 (477)
                      +++|+||+|+||||+| .++++++.++.||+++|||++|+| +|+|++++++++++.+....+..||++||+++++++++
T Consensus       221 ~lli~DEv~~g~g~~g-~~~~~~~~~~~pdi~~~sK~lg~gg~~ig~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aa  299 (396)
T PRK04073        221 VLFIADEIQTGLGRTG-KLFACDWDNVTPDMYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAA  299 (396)
T ss_pred             CEEEEecchhCCCcCc-HHHHhhhcCCCCCEEEecccccCCCCcceEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHH
Confidence            9999999999999999 677778889999999999999975 99999999999999887767889999999999999999


Q ss_pred             HHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC
Q 011777          365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG  444 (477)
Q Consensus       365 l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~  444 (477)
                      |+.++++++.++.+++++++.++|+++  .++.+..+++.|+|+++++..          ....+.+.|+++||++.+.+
T Consensus       300 L~~~~~~~l~~~~~~~~~~l~~~L~~l--~~~~i~~~~~~g~~~~~~~~~----------~~~~~~~~l~~~Gv~~~~~~  367 (396)
T PRK04073        300 LEVLEEEKLPERSLELGEYFKEQLKEI--DNPMIKEVRGRGLFIGVELNE----------PARPYCEALKEEGLLCKETH  367 (396)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHhh--cCCcccceecceEEEEEEecc----------hHHHHHHHHHHCCeEEecCC
Confidence            999887889999999999999999886  345677889999999998742          13578888999999998653


Q ss_pred             CCCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          445 LHGNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       445 ~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                        +++|||+||+++|++||++++++|++++
T Consensus       368 --~~~iRi~p~l~~t~e~i~~~~~~l~~~l  395 (396)
T PRK04073        368 --ETVIRFAPPLVITKEELDWAFEKIKAVL  395 (396)
T ss_pred             --CCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence              5799999999999999999999999876

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=100.00  E-value=4.3e-65  Score=503.90  Aligned_cols=329  Identities=39%  Similarity=0.637  Sum_probs=288.6

Q ss_pred             eEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccc-cccCChHHHHHHHHHHhhCCCCCCEEE
Q 011777           81 NIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT-TIYLHHAIADFAEALASKMPGNLKVVY  159 (477)
Q Consensus        81 ~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~-~~~~~~~~~~l~~~La~~~~~~~~~v~  159 (477)
                      ++++++|+||||.|||+||||.++++++++||+||+|.+++.+|++++.+.. ..+.++...+|+++|.+.+|...++|+
T Consensus         1 ~i~~a~G~~l~d~dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~   80 (339)
T PF00202_consen    1 FIERAEGAYLWDVDGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFPGGLDRVF   80 (339)
T ss_dssp             EEEEEEBTEEEETTSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSSTTEEEEE
T ss_pred             CeEEeecCEEEECCCCEEEECCCCccceecCCCccccchhHHHHhhhcccccccceeccchhhhhhhhhhccccccceee
Confidence            4789999999999999999999999999999999999999999999987655 456788899999999999988889999


Q ss_pred             EeCChHHHHHHHHHHHH------hccCCceEEEEccCccCCcccccccccCCCCCCCCCC--CCeeeecCCCCcCCCCCC
Q 011777          160 FVNSGTEANELAMLMAR------LSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ--GEIHHVVNPDPYHGSFGS  231 (477)
Q Consensus       160 ~~~sGseA~~~Al~~ar------~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  231 (477)
                      |++||+||||.|||+||      ..++|.+|+.|+++|||++.+++++++.+.++....+  .++.++|.|++.+   +.
T Consensus        81 f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~  157 (339)
T PF00202_consen   81 FANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAA---DE  157 (339)
T ss_dssp             EESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHH---HH
T ss_pred             eccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccch---hh
Confidence            99999999999999999      7789999999999999999999999776554443322  4667777776543   00


Q ss_pred             CHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccC
Q 011777          232 DAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQG  311 (477)
Q Consensus       232 ~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~g  311 (477)
                      ......+++++.+.....+++++||+||+++++|.+.++++||++|+++|++||+++|+|||||||||+| ++|++++++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG-~~~a~~~~g  236 (339)
T PF00202_consen  158 EEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTG-KFFASEHYG  236 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTS-SSSGHHHHT
T ss_pred             hHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccC-Cccceeccc
Confidence            1122344555555434457899999999999999999999999999999999999999999999999999 899999999


Q ss_pred             CCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHH
Q 011777          312 VIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTL  391 (477)
Q Consensus       312 v~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l  391 (477)
                      +.||++|+||+++||+|+|++++++++++.+....+++||++||++|++++++|+.++++++.+++++.+++++++|+++
T Consensus       237 v~PDiv~~gK~l~gG~p~sav~~~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~~~L~~l  316 (339)
T PF00202_consen  237 VDPDIVTFGKGLGGGLPISAVLGSEEIMEAFQPGSHGSTFGGNPLSCAAALATLEILEEEDLLERVRELGERLREGLREL  316 (339)
T ss_dssp             SSSSEEEEEGGGGTTSSEEEEEEEHHHHTTSCTTSSTCTTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcccccccchhhhhhcccccccchhhccccccccccccccchHhhhhhhhHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998778999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCceeeeccceeEEEEEe
Q 011777          392 QERHDIIGDVRGRGLMVGMELV  413 (477)
Q Consensus       392 ~~~~~~~~~v~g~g~~~~i~~~  413 (477)
                      .++++.+..++|.|+|++++++
T Consensus       317 ~~~~~~i~~vrg~Gl~~~ie~~  338 (339)
T PF00202_consen  317 AARYPLIGEVRGIGLMIGIELV  338 (339)
T ss_dssp             HHHTTTEEEEEEETTEEEEEES
T ss_pred             HHhCCCeEEEeeeCeEEEEEEE
Confidence            9999999999999999999985

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=9.7e-63  Score=499.13  Aligned_cols=369  Identities=34%  Similarity=0.515  Sum_probs=323.3

Q ss_pred             cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCC
Q 011777           77 QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLK  156 (477)
Q Consensus        77 ~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~  156 (477)
                      ..|+.+++|+|+|+||.|||+||||.+|++++++||+||+|++|+.+|++++.+....+.++...+++++|++..+  .+
T Consensus        12 ~~~~~~~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~   89 (389)
T PRK01278         12 RADLAFERGEGVWLIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSNLYRIPEQERLAERLVENSF--AD   89 (389)
T ss_pred             CCCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCccccccCChHHHHHHHHHHhhCC--CC
Confidence            4579999999999999999999999999999999999999999999999986655545668889999999999874  46


Q ss_pred             EEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccCCCCCCCCC--CCCeeeecCCCCcCCC
Q 011777          157 VVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP--QGEIHHVVNPDPYHGS  228 (477)
Q Consensus       157 ~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  228 (477)
                      +|+|++||+||++.|+|++|.+      +++.+||+++++|||++.+++..++.+.+.....  ..++.+++.++     
T Consensus        90 ~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----  164 (389)
T PRK01278         90 KVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGD-----  164 (389)
T ss_pred             EEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCC-----
Confidence            8999999999999999999887      5678999999999999999988876544332211  12333332221     


Q ss_pred             CCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccc
Q 011777          229 FGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE  308 (477)
Q Consensus       229 ~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~  308 (477)
                              .++++++++    +++++|++||+++++|+++++++++++|+++|++||++||+||||+||||+| .+++++
T Consensus       165 --------~~~l~~~l~----~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g-~~~~~~  231 (389)
T PRK01278        165 --------IEALKAAIT----PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTG-KLFAHE  231 (389)
T ss_pred             --------HHHHHHhhC----CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC-cceeec
Confidence                    478888775    4799999999999999899999999999999999999999999999999999 677778


Q ss_pred             ccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 011777          309 TQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRL  388 (477)
Q Consensus       309 ~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L  388 (477)
                      ++++.||++||||++++|+|+|++++++++++.+....+.+||++||+++++++++|+.++++++.+++++++++++++|
T Consensus       232 ~~~~~pdi~t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l  311 (389)
T PRK01278        232 WAGVTPDIMAVAKGIGGGFPLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKL  311 (389)
T ss_pred             ccCCCCCEEEEehhccCCcceEEEEEcHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999888778889999999999999999999987788999999999999999


Q ss_pred             HHHHHhCC-CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHH
Q 011777          389 RTLQERHD-IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLV  467 (477)
Q Consensus       389 ~~l~~~~~-~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l  467 (477)
                      +++..+++ .+.++++.|+++++++..          ...++.+.|+++||++.|++  .+++||+||+++++++|++++
T Consensus       312 ~~l~~~~~~~~~~v~g~G~~~~i~~~~----------~~~~~~~~l~~~GV~~~p~~--~~~lR~~p~~~~~~~~i~~~l  379 (389)
T PRK01278        312 EGLVDRFPDVIEEVRGKGLLLGLKCVV----------PNRDLVQALRDEGLLTVGAG--DNVVRLLPPLIITEEEIDEAL  379 (389)
T ss_pred             HHHHhhCCCceeeEecccEEEEEEEec----------CHHHHHHHHHHCCeEEeecC--CCEEEEeCCcccCHHHHHHHH
Confidence            99877776 778899999999988842          14578899999999999875  589999999999999999999


Q ss_pred             HHHHHHHhhC
Q 011777          468 DALDYSMSKL  477 (477)
Q Consensus       468 ~~l~~~l~~l  477 (477)
                      ++|++++.++
T Consensus       380 ~~l~~~l~~~  389 (389)
T PRK01278        380 ERLERAAESL  389 (389)
T ss_pred             HHHHHHHHhC
Confidence            9999998764

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=100.00  E-value=1.8e-62  Score=502.24  Aligned_cols=407  Identities=26%  Similarity=0.362  Sum_probs=332.8

Q ss_pred             CHHHHHHHHhhhcCCCcc---ccc----cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhc
Q 011777           56 SADQVFQKRKQFLGPSIF---HYY----QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL  128 (477)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~---~~~----~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~  128 (477)
                      +|++++++.+++++-+..   .+.    +.|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|+++.
T Consensus         1 ~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~   80 (423)
T TIGR00713         1 KSENLFEEAKQVFPGGVNSPVRAFKSVGPTPFFVARGKGAYLYDVDGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERG   80 (423)
T ss_pred             CcHHHHHHHHhhCCCCCCCcccccccCCCCCeeEEeccCCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhC
Confidence            467899999999975432   112    4589999999999999999999999999999999999999999999999886


Q ss_pred             cccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCC
Q 011777          129 QHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWK  208 (477)
Q Consensus       129 ~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~  208 (477)
                      .+.  .+.++...+|+++|++.++.. ++|+|++||+||++.|+|+||.++++++||.++++|||++...++.++.....
T Consensus        81 ~~~--~~~~~~~~~lae~l~~~~~~~-~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~  157 (423)
T TIGR00713        81 TSY--GAPTEAEILLAKEIISRVPSV-EMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAAT  157 (423)
T ss_pred             CcC--CCCCHHHHHHHHHHHHhCCcc-cEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccc
Confidence            432  245778899999999998763 78999999999999999999999999999999999999988777654322111


Q ss_pred             CCCCC-CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcE
Q 011777          209 YPIPQ-GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGV  287 (477)
Q Consensus       209 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gil  287 (477)
                      ...+. +++.....++.++.++++     .++++++++.. .+++++||+||+++++|.+.++++|+++|+++|++||++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~d-----~~~l~~~i~~~-~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~l  231 (423)
T TIGR00713       158 LGLPTSPGVPEDFAKLTLVLPYND-----LEALEEVFEEY-GEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSL  231 (423)
T ss_pred             cCCCCCCCCCcccccceEEeCCCC-----HHHHHHHHHHc-CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCE
Confidence            11110 111111112223333332     57888888632 367999999999999998888899999999999999999


Q ss_pred             EEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcc---cccccCCCCcHHHHHHHHHH
Q 011777          288 CIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQ---KIQFNTFGGNPVCSAGGLAV  364 (477)
Q Consensus       288 lI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~---~~~~~t~~~~~~~~aaa~a~  364 (477)
                      +|+||||+|| |+| ..++.+++++.||++||||++++|+|+|++++++++++.+..   ..+++||++||++|++++++
T Consensus       232 lI~DEv~~g~-r~g-~~~~~~~~~~~pDi~t~sK~l~~G~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~  309 (423)
T TIGR00713       232 LIFDEVMTGF-RVA-LGGAQEYFGVEPDLTTLGKIIGGGLPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLAT  309 (423)
T ss_pred             EEEEcccccc-ccC-cchhHHHhCCCcchhhhhhhhcCCCceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHH
Confidence            9999999999 888 566778889999999999999999999999999999998863   34678999999999999999


Q ss_pred             HHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCC-----CCccHHHHHHHHHHHHHcCce
Q 011777          365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKE-----KTPAKAETAVLFEKLRELGVL  439 (477)
Q Consensus       365 l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~~Gv~  439 (477)
                      |+.++++++.+++++++++++++|.++.++++.+..+++.|+|+++++..+...     +.++......+.+.|+++||+
T Consensus       310 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~  389 (423)
T TIGR00713       310 LKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVF  389 (423)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeE
Confidence            999988789999999999999999999888988888999999999988643211     112233456788899999999


Q ss_pred             eeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          440 VGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       440 v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      +.+.+  .+.+||+|+  +|+++|++++++|+++++++
T Consensus       390 v~~~~--~~~~~l~~~--~t~~~i~~~~~~l~~~l~~~  423 (423)
T TIGR00713       390 LPPSQ--FEACFLSAA--HTEEDIENTIEAAEEVFAEL  423 (423)
T ss_pred             EecCC--ccceeeECC--CCHHHHHHHHHHHHHHHhhC
Confidence            87643  256889876  79999999999999999764

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=1.4e-61  Score=494.15  Aligned_cols=408  Identities=25%  Similarity=0.366  Sum_probs=333.8

Q ss_pred             CCHHHHHHHHhhhcCCCc------cccc-cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhh
Q 011777           55 PSADQVFQKRKQFLGPSI------FHYY-QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKL  127 (477)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~------~~~~-~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~  127 (477)
                      |++++|+++++++++-..      +..+ ..|+.+++++|+||||.||++||||.+|+++.++||+||+|++++.+|+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~G~~l~d~dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~   81 (426)
T PRK00062          2 SKSEELFERAKKLIPGGVNSPVRAFKSVGGTPRFIERAKGAYLYDVDGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEK   81 (426)
T ss_pred             chhHHHHHHHHHhCCCCcCCcccccCCCCCCCeEEEeCcCCEEEeCCCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHh
Confidence            678999999988886332      1111 347899999999999999999999999999999999999999999999988


Q ss_pred             ccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCC
Q 011777          128 LQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTW  207 (477)
Q Consensus       128 ~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~  207 (477)
                      ..+  ..+.++...+|+++|++.++. .++|+|++||+|||+.|+|+++.++++++||.++++|||++.+....++....
T Consensus        82 ~~~--~~~~~~~~~~la~~L~~~~~~-~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~  158 (426)
T PRK00062         82 GLS--FGAPTELEVELAELVIELVPS-IEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAA  158 (426)
T ss_pred             CCc--CCCCCHHHHHHHHHHHHhCCC-CCEEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCcccc
Confidence            432  234678889999999998874 67999999999999999999999999999999999999999777666432211


Q ss_pred             CCCCCC-CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCc
Q 011777          208 KYPIPQ-GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGG  286 (477)
Q Consensus       208 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gi  286 (477)
                      ....+. .+......+..++.++++     ++++++.++. ..+++++||+||+++++|.+.++++||++|+++|++||+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~d-----~~~l~~~i~~-~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~  232 (426)
T PRK00062        159 TLGLPDSPGVPEDFAKHTLTAPYND-----LEAVEELFEE-YGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGA  232 (426)
T ss_pred             ccCCCCCCCCCcccccceEEcCCCC-----HHHHHHHHHh-CCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence            111010 111110011223333332     5778887763 246899999999999999999999999999999999999


Q ss_pred             EEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcc---cccccCCCCcHHHHHHHHH
Q 011777          287 VCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQ---KIQFNTFGGNPVCSAGGLA  363 (477)
Q Consensus       287 llI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~---~~~~~t~~~~~~~~aaa~a  363 (477)
                      ++|+||||+|| |+| .++..+++++.||++++||++++|+|+|++++++++++.+..   ..+++|+++||++++++++
T Consensus       233 llI~DEv~~G~-r~g-~~~~~~~~~~~pDi~~~gK~l~~G~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a  310 (426)
T PRK00062        233 LLIFDEVMTGF-RVA-LGGAQGYYGVTPDLTTLGKIIGGGLPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLA  310 (426)
T ss_pred             EEEEeechhcc-ccC-CccHHHHhCCCcchHhhhhHhhCCCcceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHH
Confidence            99999999999 888 577778899999999999999999999999999999998852   2466799999999999999


Q ss_pred             HHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCC-----CCccHHHHHHHHHHHHHcCc
Q 011777          364 VLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKE-----KTPAKAETAVLFEKLRELGV  438 (477)
Q Consensus       364 ~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~~Gv  438 (477)
                      +|+.++++++++++++++++++++|+++..+++.+.++++.|+|+++++..+...     +.++......+.+.|+++||
T Consensus       311 ~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv  390 (426)
T PRK00062        311 TLKLLKEPGFYEELEALTKRLAEGLKEAAKKAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGV  390 (426)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCe
Confidence            9999988889999999999999999999888998899999999999999753211     22333445789999999999


Q ss_pred             eeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          439 LVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       439 ~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      ++.+.+  .+.+++  ++++|++||++++++|+++++++
T Consensus       391 ~v~~~~--~~~~~~--~~~~t~~ei~~~~~~l~~~l~~~  425 (426)
T PRK00062        391 YLAPSQ--FEAGFV--SAAHTDEDIEKTLEAARKAFAAL  425 (426)
T ss_pred             EeecCC--cCceee--eccCCHHHHHHHHHHHHHHHHhh
Confidence            998754  245666  58999999999999999998753

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=100.00  E-value=3.1e-60  Score=482.42  Aligned_cols=372  Identities=30%  Similarity=0.516  Sum_probs=318.9

Q ss_pred             cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCC
Q 011777           77 QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLK  156 (477)
Q Consensus        77 ~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~  156 (477)
                      +.|+++++++|+||||.||++||||.+|+++.+|||+||+|.+++.+++++..+....+.++...+++++|++..+  .+
T Consensus        21 ~~~~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~   98 (403)
T PRK05093         21 PAEFIPVRGEGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHISNVFTNEPALRLAKKLIDATF--AE   98 (403)
T ss_pred             CCCeeEEEeecCEEEeCCCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHhhCC--CC
Confidence            5679999999999999999999999999999999999999999999999875544333456778899999999874  47


Q ss_pred             EEEEeCChHHHHHHHHHHHHhcc------CCceEEEEccCccCCcccccccccCCCCCCCCCC--CCeeeecCCCCcCCC
Q 011777          157 VVYFVNSGTEANELAMLMARLST------GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ--GEIHHVVNPDPYHGS  228 (477)
Q Consensus       157 ~v~~~~sGseA~~~Al~~ar~~~------~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  228 (477)
                      +++|++||+|||+.|+|+||.++      ++.+||+++++|||++.+++++++...+.....+  .++.++        +
T Consensus        99 ~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~  170 (403)
T PRK05093         99 RVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHV--------P  170 (403)
T ss_pred             EEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEe--------C
Confidence            99999999999999999999885      6789999999999999988887655433222211  223333        2


Q ss_pred             CCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccc
Q 011777          229 FGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE  308 (477)
Q Consensus       229 ~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~  308 (477)
                      +++     ++++++.+.    +++++||+||+++++|++.++++|+++|+++|++||+++|+||||+|||++| .+++++
T Consensus       171 ~~d-----~~~l~~~l~----~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g-~~~~~~  240 (403)
T PRK05093        171 FND-----LAAVKAVID----DHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTG-DLFAYM  240 (403)
T ss_pred             CCC-----HHHHHHHhc----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc-cchhhh
Confidence            222     477887775    4699999999999999888999999999999999999999999999999999 677777


Q ss_pred             ccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 011777          309 TQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRL  388 (477)
Q Consensus       309 ~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L  388 (477)
                      ++++.||+.+|||++++|+|+|++++++++++.+....+..|++++|+.|++++++|+.+.++++.++++++++++++.|
T Consensus       241 ~~~~~pdi~s~sK~l~~G~rig~vv~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L  320 (403)
T PRK05093        241 HYGVTPDILTSAKALGGGFPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGL  320 (403)
T ss_pred             hcCCCCCEEEecccccCCcceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999988767778999999999999999999877788999999999999999


Q ss_pred             HHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHH
Q 011777          389 RTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVD  468 (477)
Q Consensus       389 ~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~  468 (477)
                      +++..+++.+..+++.|+++++++...      ......++.+.|+++||++.+.+  .+++||+|++.+++++|+++++
T Consensus       321 ~~~~~~~~~~~~~~~~G~~~~~~l~~~------~~~~~~~~~~~l~~~Gv~v~~~g--~~~lRl~~~~~~~~~~i~~~~~  392 (403)
T PRK05093        321 QKINQKYGVFSEIRGMGLLIGAELKPQ------YKGRARDFLNAAAEEGVMVLVAG--PDVLRFAPSLVIEEADIDEGLA  392 (403)
T ss_pred             HHHHhhCCCeEeEeeCceEEEEEecCc------chhHHHHHHHHHHHCCeEEecCC--CCEEEEeCCCCCCHHHHHHHHH
Confidence            998766777788999999999998421      01235678899999999998754  4799999999999999999999


Q ss_pred             HHHHHHhh
Q 011777          469 ALDYSMSK  476 (477)
Q Consensus       469 ~l~~~l~~  476 (477)
                      +|++++.+
T Consensus       393 ~l~~~l~~  400 (403)
T PRK05093        393 RFEKAVAK  400 (403)
T ss_pred             HHHHHHHH
Confidence            99998865

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=1.9e-59  Score=476.58  Aligned_cols=384  Identities=34%  Similarity=0.582  Sum_probs=324.7

Q ss_pred             HHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCC
Q 011777           58 DQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH  137 (477)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~  137 (477)
                      ++.++...+++.+..   ...|+++.+++|+|+||.|||+||||.+++++++|||+||+|++++.+++++..+....|.+
T Consensus         8 ~~~~~~~~~~~~~~~---~~~~~~~~~~~G~~~~d~dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~   84 (398)
T PRK03244          8 AELLQRWQAVMMNNY---GTPPLALVRGEGAVVWDVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLFAT   84 (398)
T ss_pred             HHHHHHHHHHhhhhc---cCCCceEEEeeecEEEECCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccCccCccCC
Confidence            345555445544331   24579999999999999999999999999999999999999999999999986554445777


Q ss_pred             hHHHHHHHHHHhhCCCC-CCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCC--C
Q 011777          138 HAIADFAEALASKMPGN-LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ--G  214 (477)
Q Consensus       138 ~~~~~l~~~La~~~~~~-~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~  214 (477)
                      +...+|+++|++.++.. .++++|++||+||++.|+++++. +++++||.++++|||++.+++..++...+......  .
T Consensus        85 ~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~-~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~  163 (398)
T PRK03244         85 EPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARL-TGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPG  163 (398)
T ss_pred             HHHHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHH-HCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCC
Confidence            88889999999998743 47999999999999999999987 67889999999999999988877654332222211  1


Q ss_pred             CeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcc
Q 011777          215 EIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQ  294 (477)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~  294 (477)
                      ++..++.        + |    .+++++++.    +++++|++||+++++|.+.++++|+++|+++|++||+++|+||+|
T Consensus       164 ~~~~~~~--------~-d----~~~l~~~~~----~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~  226 (398)
T PRK03244        164 GVEHVPY--------G-D----VDALAAAVD----DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQ  226 (398)
T ss_pred             CceEeCC--------C-C----HHHHHHhhc----CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence            2232221        1 1    477777774    478999999999999999999999999999999999999999999


Q ss_pred             cCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHH
Q 011777          295 TGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQ  374 (477)
Q Consensus       295 ~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~  374 (477)
                      +||||+| .+++++++++.||++||||++++|+|+|++++++++++.+....+.+||++||+++++++++|+.++++++.
T Consensus       227 ~g~gr~g-~~~~~~~~~~~pDi~t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~  305 (398)
T PRK03244        227 TGIGRTG-AWFAHQHDGVTPDVVTLAKGLGGGLPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLL  305 (398)
T ss_pred             cCCcccc-hHHhhhhhCCCCCEEEEchhhhCCcccEEEEEcHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHhccHH
Confidence            9999999 677788889999999999999999999999999999998877678899999999999999999998888899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeC
Q 011777          375 AHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKP  454 (477)
Q Consensus       375 ~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p  454 (477)
                      ++++++++++++.|+++  .++.+..+++.|+++++++..+         ....+.+.|+++||++.+.+  .++|||+|
T Consensus       306 ~~~~~~~~~l~~~L~~~--~~~~~~~v~g~g~~~~i~~~~~---------~~~~~~~~l~~~Gv~~~~~~--~~~iR~~p  372 (398)
T PRK03244        306 ENAERLGEQLRAGIEAL--GHPLVDHVRGRGLLLGIVLTAP---------VAKAVEAAAREAGFLVNAVA--PDVIRLAP  372 (398)
T ss_pred             HHHHHHHHHHHHHHHhc--CCCceeeEeeccEEEEEEEecc---------HHHHHHHHHHHCCeEEeecC--CCEEEEEC
Confidence            99999999999999886  4676778999999999998421         34678899999999998753  58999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhh
Q 011777          455 PMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       455 ~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ++.++++||++++++|++++.+
T Consensus       373 ~~~~t~~~i~~~~~~l~~~l~~  394 (398)
T PRK03244        373 PLIITDAQVDAFVAALPAILDA  394 (398)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999865

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=2e-59  Score=473.15  Aligned_cols=366  Identities=36%  Similarity=0.608  Sum_probs=315.4

Q ss_pred             cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCC
Q 011777           77 QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLK  156 (477)
Q Consensus        77 ~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~  156 (477)
                      +.|+.+++++|+|+||.|||+||||.+|+++++|||+||+|++|+.+|+++..+....+.++...+++++|.+..+  .+
T Consensus        10 ~~~~~~~~~~G~~~~d~~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~   87 (377)
T PRK02936         10 RFPIDIVKGKGTKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHVSNLFTNSLQEEVASLLAENSA--GD   87 (377)
T ss_pred             CCCceEEEeecCEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhcCC--CC
Confidence            3578999999999999999999999999999999999999999999999986554444567888899999998765  36


Q ss_pred             EEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCC--CCeeeecCCCCcCCCCCCCHH
Q 011777          157 VVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ--GEIHHVVNPDPYHGSFGSDAA  234 (477)
Q Consensus       157 ~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  234 (477)
                      +++|++||+|||+.|+++++.++++++||+++++|||++.+.++.++...++....+  .++..+        ++++   
T Consensus        88 ~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~d---  156 (377)
T PRK02936         88 LVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHV--------PFND---  156 (377)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEe--------CCCC---
Confidence            899999999999999999999999999999999999999988887654332221111  122222        2221   


Q ss_pred             HHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCc
Q 011777          235 RYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIP  314 (477)
Q Consensus       235 ~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~p  314 (477)
                        .+++++.+.    +++++|++||+++++|.++++++||++|+++|++||+++|+||||+|||++| .+++++++++.|
T Consensus       157 --~~~l~~~~~----~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g-~~~~~~~~~~~~  229 (377)
T PRK02936        157 --IKALKEVMN----EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTG-TLFAYEQFGLDP  229 (377)
T ss_pred             --HHHHHHhcc----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc-hhhHHHhhCCCC
Confidence              477887775    4689999999999999888999999999999999999999999999999999 677777889999


Q ss_pred             ceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHh
Q 011777          315 DIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQER  394 (477)
Q Consensus       315 Divt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~  394 (477)
                      |++||||++++|+|+|++++++++++.+....+.+||++||+++++++++|+.+..+++.+++++++++++++|+++..+
T Consensus       230 di~t~sK~l~~G~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  309 (377)
T PRK02936        230 DIVTVAKGLGNGIPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQEELEH  309 (377)
T ss_pred             cEEEEcccccCCCccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999987767788999999999999999999877788999999999999999987666


Q ss_pred             CCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          395 HDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       395 ~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      ++.+..+++.|+++++++..+          ...+.+.|+++||++.+.+  .+++||+||+.+++++|++++++|++++
T Consensus       310 ~~~~~~v~~~g~~~~i~~~~~----------~~~~~~~l~~~gv~v~~~g--~~~lRi~p~~~~~~~~i~~~i~~l~~~~  377 (377)
T PRK02936        310 LECVKNIRGKGLMIGIECTEE----------VAPVIEQLREEGLLVLSAG--PNVIRLLPPLVVTKEELDQAVYLLKKVL  377 (377)
T ss_pred             CCcEEeEeecceEEEEEecch----------HHHHHHHHHHCCeEEecCC--CCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence            787888889999999998421          4568889999999998864  5799999999999999999999998864

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=100.00  E-value=3.5e-58  Score=467.32  Aligned_cols=388  Identities=27%  Similarity=0.482  Sum_probs=325.6

Q ss_pred             HHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCC
Q 011777           58 DQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH  137 (477)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~  137 (477)
                      ++++++..++....   +.+.|+.+.+++|+||||.||++||||.+++++.++||+||+|++|+.++++++.+....+.+
T Consensus         2 ~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~   78 (401)
T TIGR01885         2 EEAIERENKYGAHN---YHPLPVVFSKAEGVHVWDVEGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLSSRAFYN   78 (401)
T ss_pred             hhHHHHHHHhhhcc---cCCCCceEEeeecCEEEeCCCCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhccccccccCC
Confidence            46777777765432   234578889999999999999999999999999999999999999999999987655444467


Q ss_pred             hHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc--------cCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          138 HAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS--------TGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       138 ~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~--------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +...+++++|+++++  .++++|++||+|||+.|++++|.+        +++..|++++++|||++.+.+++++...++.
T Consensus        79 ~~~~~l~~~l~~~~~--~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~  156 (401)
T TIGR01885        79 DVFGEFAEYVTKLFG--YDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRT  156 (401)
T ss_pred             HHHHHHHHHHHhhcC--CCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCccccc
Confidence            888999999999985  479999999999999999999876        3578899999999999999888876433322


Q ss_pred             CCCC--CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcE
Q 011777          210 PIPQ--GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGV  287 (477)
Q Consensus       210 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gil  287 (477)
                      ....  .++..++        +++     .++++++++.. ++++++|++||+++++|.+.++++||++|+++|++||++
T Consensus       157 ~~~~~~~~~~~~~--------~~d-----~~~le~~l~~~-~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~l  222 (401)
T TIGR01885       157 NFGPYVPGFKKIP--------YNN-----LEALEEALEDH-GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVL  222 (401)
T ss_pred             ccCCCCCCceEeC--------CCC-----HHHHHHHHHhc-CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence            2211  2233332        221     47888888643 357999999999999999999999999999999999999


Q ss_pred             EEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHH
Q 011777          288 CIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLR  366 (477)
Q Consensus       288 lI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~  366 (477)
                      +|+||||+||||+| .+++++++++.||++++||++++| +|+|++++++++++.+....+..||++||++++++.++|+
T Consensus       223 li~DEv~~g~g~~G-~~~~~~~~~~~~di~~~gK~l~~g~~~ig~v~~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~  301 (401)
T TIGR01885       223 LIADEIQTGLGRTG-KLLCVDHENVKPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALE  301 (401)
T ss_pred             EEEechhhCCCccc-hhhHHhhcCCCCCEEEeeccccCCCCCcEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHH
Confidence            99999999999999 677777889999999999999986 8999999999999988765677899999999999999999


Q ss_pred             hhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC
Q 011777          367 VIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH  446 (477)
Q Consensus       367 ~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~  446 (477)
                      .++++++.+++++++++++++|+++  .++.+..+++.|+|+.+++..+.     ......++.+.|.++||++.+.+  
T Consensus       302 ~i~~~~l~~~~~~~~~~~~~~L~~l--~~~~~~~~~g~g~~~~i~~~~~~-----~~~~~~~l~~~l~~~Gv~v~~~~--  372 (401)
T TIGR01885       302 VLEEEKLAENAEKLGEIFRDQLKKL--PKPIITEVRGRGLLNAIVIDESK-----TGRTAWDLCLKLKEKGLLAKPTH--  372 (401)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHhc--cCCceeEEeecCeeEEEEeccCc-----chhHHHHHHHHHHhCCEEEEecC--
Confidence            9987788899999999999999987  34667788999999999884321     01245778899999999998764  


Q ss_pred             CCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          447 GNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       447 ~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      ++.+||+||+.+|+++|++++++|++++
T Consensus       373 ~~~lRi~p~l~~t~~~i~~~l~~l~~~l  400 (401)
T TIGR01885       373 GNIIRLAPPLVITEEQLDEGLEIIKKVI  400 (401)
T ss_pred             CCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence            6799999999999999999999999876

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=100.00  E-value=4.1e-58  Score=468.12  Aligned_cols=387  Identities=20%  Similarity=0.291  Sum_probs=307.6

Q ss_pred             HHHHHHHHhhhcCCCccc----c--c--cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhc
Q 011777           57 ADQVFQKRKQFLGPSIFH----Y--Y--QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL  128 (477)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~----~--~--~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~  128 (477)
                      |.++++++.++++.+...    .  +  ..|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+++|++++
T Consensus         1 s~~l~~~a~~~~p~g~~~~~~~~~~~~~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~   80 (431)
T PRK06209          1 SQLLQSRLHALIPGGAHTYAKGDDQYPELAPGFIQRGSGAHVWDVDGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDG   80 (431)
T ss_pred             CHHHHHHHHhhCCCCCCCCccccccCCCCCCeEEEeccCCEEEeCCCCEEEEccccccchhcCCCCHHHHHHHHHHHHhC
Confidence            357888999998754321    1  1  3578999999999999999999999999999999999999999999999986


Q ss_pred             cccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEE-ccCccCCcccccccccCCCC
Q 011777          129 QHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIAL-RNAYHGGSSGTIGLTALNTW  207 (477)
Q Consensus       129 ~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~-~~~yhG~~~~~~~~~~~~~~  207 (477)
                      .+.  ...+....+|+++|++.+|. .++++|+||||||+|.|+|+||.++||.+|+.+ .++|||...+....+.... 
T Consensus        81 ~~~--~~~~~~~~~la~~l~~~~p~-~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~-  156 (431)
T PRK06209         81 CNF--TRPSAIELDAAESFLELIDG-ADMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSA-  156 (431)
T ss_pred             cCC--CCCCHHHHHHHHHHHHhCCc-cceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCC-
Confidence            532  23345556899999999875 579999999999999999999999999999999 7888875443332211000 


Q ss_pred             CCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcE
Q 011777          208 KYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGV  287 (477)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gil  287 (477)
                        ..+. ....    .....++++     +++++++++. +.+++++||+||++++    .++++||++|+++|++||++
T Consensus       157 --~~~~-~~~~----~~~~~~~~d-----~~~l~~~l~~-~~~~~aavi~Epv~g~----~~~~~~l~~l~~lc~~~g~l  219 (431)
T PRK06209        157 --GIPA-SVSA----LTVTFRYND-----IASLEALFED-HPGRIACVILEPATAD----EPQDGFLHEVRRLCHENGAL  219 (431)
T ss_pred             --CCCh-hHhc----cccccCCCC-----HHHHHHHHHh-CCCCEEEEEEccccCC----CCCHHHHHHHHHHHHHcCCE
Confidence              0000 0100    111122332     5788888863 3468999999999876    67899999999999999999


Q ss_pred             EEEcCcccCccCCCCCCcccc-ccCCCcceeeecccccCccceEEEEeCHHHHHh--hcc------cccccCCCCcHHHH
Q 011777          288 CIADEVQTGFGRTGSHYWGFE-TQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANV--MAQ------KIQFNTFGGNPVCS  358 (477)
Q Consensus       288 lI~DEv~~gfgr~G~~~~~~~-~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~--~~~------~~~~~t~~~~~~~~  358 (477)
                      +|+|||++||++++   ++++ ++++.||++|+||++|+|+|+|++++++++++.  +..      ..+++||++||+++
T Consensus       220 LI~DEv~tG~~~~~---~g~~~~~gv~PDi~t~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~  296 (431)
T PRK06209        220 FILDEMITGFRWHM---RGAQKLYGIVPDLSCFGKALGNGFAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHAL  296 (431)
T ss_pred             EEEEcccccCCcCc---chhhHHhCCCcceeeehhhhcCCcccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHH
Confidence            99999999998754   3344 689999999999999999999999999999986  311      13678999999999


Q ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCc
Q 011777          359 AGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGV  438 (477)
Q Consensus       359 aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv  438 (477)
                      ++++++|++++++++.+++++++++++++|+++..+++.+.++++.|.++.+++......+.+.......+.+.|+++|+
T Consensus       297 aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~~~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi  376 (431)
T PRK06209        297 AAAIATMAIYRDEDVIERLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIRRGV  376 (431)
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHHCCc
Confidence            99999999999889999999999999999999988899888899999998888864332233444444578889999999


Q ss_pred             eeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          439 LVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       439 ~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ++.+       +++  +..+|++||++++++|++++++
T Consensus       377 ~~p~-------l~i--s~~ht~~dId~~l~~l~~~l~~  405 (431)
T PRK06209        377 LMPS-------LVV--SYAHGDADIERTIDAVHGALGV  405 (431)
T ss_pred             cccc-------ccc--cccCCHHHHHHHHHHHHHHHHH
Confidence            8732       344  5788999999999999998864

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=100.00  E-value=1.9e-57  Score=462.33  Aligned_cols=385  Identities=28%  Similarity=0.488  Sum_probs=322.0

Q ss_pred             HHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccC
Q 011777           57 ADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL  136 (477)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~  136 (477)
                      ++++++....+....   +++.|+.+.+++|+|+||.||++||||.++++++++||+||+|++|+.+|++++.+....+.
T Consensus         5 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~~~~~~~   81 (401)
T PRK00854          5 SEDLIATEQRLGAHN---YKPLDVVLTRGEGVWVWDTDGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTSRAFR   81 (401)
T ss_pred             CHHHHHHHhhhhhcc---cCCCCceEEeeeeCEEEECCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccC
Confidence            467776554433222   23567899999999999999999999999999999999999999999999998766554456


Q ss_pred             ChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc--------cCCceEEEEccCccCCcccccccccCCCCC
Q 011777          137 HHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS--------TGNLGMIALRNAYHGGSSGTIGLTALNTWK  208 (477)
Q Consensus       137 ~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~--------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~  208 (477)
                      ++...+|+++|+++.+.  ++++|++||+||+++|++++|.+        +++++||++.++|||++...++.+..+.++
T Consensus        82 ~~~~~~l~~~l~~~~~~--~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~  159 (401)
T PRK00854         82 NDQLAPLYEELAALTGS--HKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDAR  159 (401)
T ss_pred             CHHHHHHHHHHHhhCCC--CEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCcccc
Confidence            78889999999998864  68999999999999999999876        356799999999999998887776544332


Q ss_pred             CCCC--CCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCc
Q 011777          209 YPIP--QGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGG  286 (477)
Q Consensus       209 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gi  286 (477)
                      ....  ..++.+++.++             .+++++.+.    +++++|++||++|++|.+.++++||++|+++|++||+
T Consensus       160 ~~~~~~~~~~~~~~~~d-------------~~~le~~i~----~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi  222 (401)
T PRK00854        160 GGFGPFTPGFRVVPFGD-------------AEALEAAIT----PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNV  222 (401)
T ss_pred             ccCCCCCCCeEEeCCCC-------------HHHHHHHhC----CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence            2221  13444443221             478888775    4789999999999999999999999999999999999


Q ss_pred             EEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHH
Q 011777          287 VCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVL  365 (477)
Q Consensus       287 llI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l  365 (477)
                      ++|+||+|+|||++| .+++.+++++.||++++||++++| +|+|++++++++++.+....+..||++||+++++++++|
T Consensus       223 ~lI~DEv~~g~g~~g-~~~~~~~~g~~~D~~~~~K~l~gg~~~ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L  301 (401)
T PRK00854        223 TLILDEIQTGLGRTG-KLLAEEHEGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAAL  301 (401)
T ss_pred             EEEEechhhCCCCCc-hHhHHhhcCCCCCEEEecccccCCccCeEEEEEcHHHHhcccCCCCCCCCCcCHHHHHHHHHHH
Confidence            999999999999999 566667889999999999999988 799999999999998876667889999999999999999


Q ss_pred             HhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC
Q 011777          366 RVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL  445 (477)
Q Consensus       366 ~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~  445 (477)
                      +.++++++.++++++++++.+.|+++.  ...+..+++.|.|+.+++..+       .....++.+.|+++||++.+.+ 
T Consensus       302 ~~l~~~~~~~~~~~~~~~l~~~L~~~~--~~~~~~~~g~g~~~~i~~~~~-------~~~~~~~~~~L~~~GV~v~~~~-  371 (401)
T PRK00854        302 KVLTEEGMIENAAEMGAYFLEGLRSIR--SNIVREVRGRGLMLAVELEPE-------AGGARQYCEALKERGLLAKDTH-  371 (401)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHhhc--cCceEEEeccceEEEEEEecC-------chhHHHHHHHHHHCCeEEecCC-
Confidence            998877789999999999999998873  344567789999999887532       1134678899999999997643 


Q ss_pred             CCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          446 HGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       446 ~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                       ++++||+|++.+++++|++++++|++++.
T Consensus       372 -~~~lR~~p~~~~t~e~i~~~i~~l~~~l~  400 (401)
T PRK00854        372 -DHTIRLAPPLVITREQVDWALEQIAKVLA  400 (401)
T ss_pred             -CCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence             57999999999999999999999999874

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=2.5e-57  Score=461.18  Aligned_cols=386  Identities=35%  Similarity=0.599  Sum_probs=328.6

Q ss_pred             CHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccccc
Q 011777           56 SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY  135 (477)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~  135 (477)
                      .+.++.++.++++...   +.+.|+++++++|+|+||.|||+||||.+|++++++||+||+|.+++.+++++..+....|
T Consensus         2 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~d~dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~   78 (396)
T PRK02627          2 TSEAIIELEKKYLMNT---YGRLPIAFVRGEGARLWDDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHTSNLY   78 (396)
T ss_pred             CHHHHHHHHHHhhccc---ccCCCceEEeeeeCEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhcccccccc
Confidence            3566767666665443   2355899999999999999999999999999999999999999999999998865544557


Q ss_pred             CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCC-----ceEEEEccCccCCcccccccccCCCCCCC
Q 011777          136 LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGN-----LGMIALRNAYHGGSSGTIGLTALNTWKYP  210 (477)
Q Consensus       136 ~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~-----~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  210 (477)
                      .++...+++++|++..  +.++++|++||+||+++|+++++.++++     ++|++++++|||++...+..++...++..
T Consensus        79 ~~~~~~~la~~l~~~~--~~~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~  156 (396)
T PRK02627         79 YIEPQEELAEKLVELS--GMDKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEG  156 (396)
T ss_pred             CCHHHHHHHHHHHhhc--CCCEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCcccccc
Confidence            7888999999999986  4589999999999999999999988776     78999999999999988887764433221


Q ss_pred             CCC--CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEE
Q 011777          211 IPQ--GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVC  288 (477)
Q Consensus       211 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill  288 (477)
                      ..+  .++..++        +++     ++++++++.    +++++|++||+++++|..+++++++++|+++|++||++|
T Consensus       157 ~~~~~~~~~~~~--------~~d-----~~~l~~~i~----~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~l  219 (396)
T PRK02627        157 FEPLVEGFIYVP--------FND-----IEALKAAIT----DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILL  219 (396)
T ss_pred             CCCCCCCceEeC--------CCC-----HHHHHHhcC----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence            111  2222222        111     477887774    578999999999999988899999999999999999999


Q ss_pred             EEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhh
Q 011777          289 IADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVI  368 (477)
Q Consensus       289 I~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l  368 (477)
                      |+||+|+|||++| .+++++..++.||+++|||++++|+|+|++++++++++.+....+..||++|+++++++.++|+.+
T Consensus       220 I~DE~~~g~g~~g-~~~~~~~~~~~pdi~t~sK~~~~G~rig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~  298 (396)
T PRK02627        220 ILDEVQTGMGRTG-KLFAYQHYGIEPDIMTLAKGLGGGVPIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIEII  298 (396)
T ss_pred             EEechhcCCCccC-ceeeehhcCCCCCEEEEcchhhCCcccEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999 677778889999999999999999999999999999998876667889999999999999999998


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCC
Q 011777          369 DKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGN  448 (477)
Q Consensus       369 ~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~  448 (477)
                      +++++.+++++++++++++|.++..+++.+..+++.|+++++++..          ...++.+.|+++||++.+++  .+
T Consensus       299 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~----------~~~~~~~~l~~~Gv~v~~~~--~~  366 (396)
T PRK02627        299 EEEGLLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIELDR----------PAAEIVKKALEKGLLINVTG--DN  366 (396)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHhCCCeeeeccCcEEEEEEecC----------cHHHHHHHHHHCCeEEeecC--CC
Confidence            8888999999999999999999877777777888999999998821          14578889999999999865  47


Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          449 VFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       449 ~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ++||+|++.++++++++++++|++++++
T Consensus       367 ~lRi~~~~~~~~~~i~~~~~~l~~~l~~  394 (396)
T PRK02627        367 VLRLLPPLIISKEEIDEAVDRLEEVLKE  394 (396)
T ss_pred             EEEEECCcccCHHHHHHHHHHHHHHHHh
Confidence            8999999999999999999999999875

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=100.00  E-value=7.7e-57  Score=458.01  Aligned_cols=373  Identities=27%  Similarity=0.464  Sum_probs=315.4

Q ss_pred             cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCC
Q 011777           77 QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLK  156 (477)
Q Consensus        77 ~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~  156 (477)
                      +.|+.+++++|+|+||.|||+||||.+|+++.++||+||+|++|+.++++++.+....+.++...++++.|++..+  .+
T Consensus        12 ~~~~~~~~~~G~~~~d~dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~   89 (400)
T PTZ00125         12 PLPVVLKRGKGVFVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSRAFYNDVLGLAEKYITDLFG--YD   89 (400)
T ss_pred             CCCccEEeeecCEEEeCCCCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHhCCC--CC
Confidence            4578999999999999999999999999999999999999999999999887665544456777888888887763  47


Q ss_pred             EEEEeCChHHHHHHHHHHHHhc--------cCCceEEEEccCccCCcccccccccCCCCCCCCCC--CCeeeecCCCCcC
Q 011777          157 VVYFVNSGTEANELAMLMARLS--------TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ--GEIHHVVNPDPYH  226 (477)
Q Consensus       157 ~v~~~~sGseA~~~Al~~ar~~--------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  226 (477)
                      +++|++||+|||+.|+++++.+        +++.+||+++++|||.+.+.++.+....+.....+  .++..++.     
T Consensus        90 ~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  164 (400)
T PTZ00125         90 KVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDY-----  164 (400)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCC-----
Confidence            9999999999999999999854        24678999999999999998887754322211111  13333321     


Q ss_pred             CCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc
Q 011777          227 GSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG  306 (477)
Q Consensus       227 ~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~  306 (477)
                         + |    +++++++++   .+++++|++||+++++|.+.++++|+++|+++|++||+++|+||||+|||++| .++.
T Consensus       165 ---~-d----~~~le~~l~---~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G-~~~~  232 (400)
T PTZ00125        165 ---N-D----VEALEKLLQ---DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTG-KLLA  232 (400)
T ss_pred             ---C-C----HHHHHHHhC---CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc-hhhH
Confidence               1 1    578888885   35799999999999999999999999999999999999999999999999999 6777


Q ss_pred             ccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 011777          307 FETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLL  385 (477)
Q Consensus       307 ~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~  385 (477)
                      .+.+++.||++++||++++| +|+|++++++++++.+....+..|+++||+.++++.++|+.++++++.+++++++++++
T Consensus       233 ~~~~~~~pd~~~~sK~l~~g~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~~~~l~  312 (400)
T PTZ00125        233 HDHEGVKPDIVLLGKALSGGLYPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVFR  312 (400)
T ss_pred             HHhcCCCCCEEEEcccccCCCcCcEEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            77889999999999999988 49999999999999887666778999999999999999999887788999999999999


Q ss_pred             HHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHH
Q 011777          386 GRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADF  465 (477)
Q Consensus       386 ~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~  465 (477)
                      ++|+++...++.+..+++.|+++++++..+      .......+.+.|+++||++.+++  ++++||+|++.+++++|++
T Consensus       313 ~~l~~l~~~~~~~~~~~~~g~~~~v~~~~~------~~~~~~~~~~~l~~~Gv~v~~~~--~~~lRi~~~~~~~~~~i~~  384 (400)
T PTZ00125        313 DGLKELLKKSPWVKEIRGKGLLNAIVFDHS------DGVNAWDLCLKLKENGLLAKPTH--DNIIRFAPPLVITKEQLDQ  384 (400)
T ss_pred             HHHHHHHhcCCCeEEEecccEEEEEEEccC------cchHHHHHHHHHHHCCeEEeecC--CCEEEEECCccCCHHHHHH
Confidence            999998767777778899999999988431      12245678899999999998864  6899999999999999999


Q ss_pred             HHHHHHHHHhh
Q 011777          466 LVDALDYSMSK  476 (477)
Q Consensus       466 ~l~~l~~~l~~  476 (477)
                      ++++|++++++
T Consensus       385 ~l~~l~~~l~~  395 (400)
T PTZ00125        385 ALEIIKKVLKS  395 (400)
T ss_pred             HHHHHHHHHHH
Confidence            99999998875

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=2.4e-56  Score=450.09  Aligned_cols=364  Identities=30%  Similarity=0.528  Sum_probs=307.8

Q ss_pred             cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCC
Q 011777           77 QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLK  156 (477)
Q Consensus        77 ~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~  156 (477)
                      +.|+++++++|+||||.||++||||.+|++++++|| ||+|++|+.++++++.+....+.++...+++++|...   ...
T Consensus        10 ~~~~~~~~~~G~~l~d~dg~~~lD~~s~~~~~~lG~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~---~~~   85 (375)
T PRK04260         10 RAAIEFVKAEGNYLIDTDGKKYLDFSSGIGVTNLGF-HPQVQQALQKQAGLIWHSPNLYLNSLQEEVAQKLIGD---KDY   85 (375)
T ss_pred             CCCceEEEeeeCEEEeCCCCEEEECCCCcccccCCC-CHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHhcC---cCC
Confidence            357899999999999999999999999999999999 9999999999998764433344566667777766542   123


Q ss_pred             EEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCC--CCeeeecCCCCcCCCCCCCHH
Q 011777          157 VVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ--GEIHHVVNPDPYHGSFGSDAA  234 (477)
Q Consensus       157 ~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  234 (477)
                      .++|++||+|||+.|++++|.++++++||+++++|||++..+++.++...+......  ..+...        +++ |  
T Consensus        86 ~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-d--  154 (375)
T PRK04260         86 LAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYA--------IFN-D--  154 (375)
T ss_pred             EEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEe--------CCC-C--
Confidence            689999999999999999999999999999999999999888877654332221111  111111        121 1  


Q ss_pred             HHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCc
Q 011777          235 RYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIP  314 (477)
Q Consensus       235 ~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~p  314 (477)
                        ++++++++.    +++++|++||+++++|++.++++||++++++|+++|+++|+||+|+|||++| .++.++.+++.|
T Consensus       155 --l~~l~~~l~----~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g-~~~~~~~~~~~p  227 (375)
T PRK04260        155 --LNSVKALVN----KNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTG-KLYAFEHYGIEP  227 (375)
T ss_pred             --HHHHHHhcC----CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc-chhhhHhhCCCC
Confidence              477777664    4689999999999999999999999999999999999999999999999999 677777889999


Q ss_pred             ceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHh
Q 011777          315 DIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQER  394 (477)
Q Consensus       315 Divt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~  394 (477)
                      |++||||++++|+|+|++++++++++.+....+.+||++|+++++++.++|+.++.+++.+++++.++++++++.++..+
T Consensus       228 di~t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  307 (375)
T PRK04260        228 DIFTLAKGLANGVPVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQD  307 (375)
T ss_pred             CEEEecccccCCcceEEEEEcHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999887667889999999999999999999988889999999999999999998888


Q ss_pred             CCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          395 HDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       395 ~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      ++.+..+++.|+++++++..          ....+.+.|+++||++.+.+  .+.+||+||+.++++|+++++++|++++
T Consensus       308 ~~~~~~~~~~g~~~~~~~~~----------~~~~~~~~l~~~Gi~v~~~~--~~~lR~~~~~~~t~~~i~~~l~~l~~~~  375 (375)
T PRK04260        308 KETVTTVRGLGYMIGIETTA----------DLSQLVEAARDKGLIVLTAG--TNVIRLLPPLTLTKEEIEQGIAILSEVF  375 (375)
T ss_pred             CCCeeEEeccceEEEEEecC----------cHHHHHHHHHhCCCEEecCC--CCEEEEcCCCccCHHHHHHHHHHHHHhC
Confidence            87778888999999999832          13578899999999998764  4789999999999999999999998763

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=100.00  E-value=8.3e-56  Score=452.51  Aligned_cols=404  Identities=41%  Similarity=0.660  Sum_probs=329.3

Q ss_pred             HhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccc-cCChHHHH
Q 011777           64 RKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI-YLHHAIAD  142 (477)
Q Consensus        64 ~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~-~~~~~~~~  142 (477)
                      .+++++.... ....|+++++++|.++||.||++||||.+|++++++||+||+|++++.+++.+..+.... +.++...+
T Consensus         5 ~~~~~~~~~~-~~~~~~~~~~~~g~~~~d~dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~   83 (413)
T cd00610           5 DRKVLWHGYT-VRPYPLVIVRAEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSLGFFYNEPAVE   83 (413)
T ss_pred             hhhhcccccc-CCCCCceEEeeecCEEEeCCCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhCcCccCcccCCHHHHH
Confidence            3445443322 225689999999999999999999999999999999999999999999999876443322 25778999


Q ss_pred             HHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCC--CCeeeec
Q 011777          143 FAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ--GEIHHVV  220 (477)
Q Consensus       143 l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~~~~~~~  220 (477)
                      ++++|+++++...++++|++||+||++.|+++++.++++++|++++++|||++...+..++...+......  ..+..++
T Consensus        84 l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (413)
T cd00610          84 LAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVP  163 (413)
T ss_pred             HHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeC
Confidence            99999999986678999999999999999999998899999999999999999988887654322211111  2233333


Q ss_pred             CCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCC
Q 011777          221 NPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRT  300 (477)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~  300 (477)
                      .+.+.+.  ..+....+++|+++++. +++++++|++||+++++|.+.++++|+++|+++|++||+++|+||+|+||||+
T Consensus       164 ~~~~~~~--~~~~~~d~~~l~~~l~~-~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~  240 (413)
T cd00610         164 YPYRYRP--PAELADDLEALEEALEE-HPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRT  240 (413)
T ss_pred             CCccccc--hhhHHHHHHHHHHHHhc-CCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcC
Confidence            2211110  01122235677777763 23578999999999999988999999999999999999999999999999999


Q ss_pred             CCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhh--cccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHH
Q 011777          301 GSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVM--AQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCA  378 (477)
Q Consensus       301 G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~--~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~  378 (477)
                      | ..+.++.+++.||++++||++++|+|+|++++++++++.+  ....+.+|+++|+++++++.++|+.++++++.++++
T Consensus       241 g-~~~~~~~~~~~~d~~t~sK~l~~g~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~  319 (413)
T cd00610         241 G-KMFAFEHFGVEPDIVTLGKGLGGGLPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAA  319 (413)
T ss_pred             c-chhhHhhcCCCCCeEEEcccccCccccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHH
Confidence            8 5667788899999999999999999999999999999986  445677899999999999999999998888999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCC
Q 011777          379 DVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCF  458 (477)
Q Consensus       379 ~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~  458 (477)
                      +++++++++|+++...++.+..+++.|.++++.+..+.....++......+.+.|+++||++.+++  ++.+|++|++.+
T Consensus       320 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~--~~~lR~~~~~~~  397 (413)
T cd00610         320 ELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSG--GNVIRLLPPLII  397 (413)
T ss_pred             HHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecC--CCEEEEECCCcC
Confidence            999999999999876667777788999999999865422222333456778999999999999875  688999999999


Q ss_pred             cHHHHHHHHHHHHHHH
Q 011777          459 TKDDADFLVDALDYSM  474 (477)
Q Consensus       459 t~e~i~~~l~~l~~~l  474 (477)
                      |++||++++++|++++
T Consensus       398 t~~~i~~~~~~l~~~l  413 (413)
T cd00610         398 TEEEIDEGLDALDEAL  413 (413)
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            9999999999998764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=3.3e-54  Score=398.44  Aligned_cols=422  Identities=27%  Similarity=0.390  Sum_probs=344.4

Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCC
Q 011777           34 AVATTPPQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHC  113 (477)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~  113 (477)
                      ..+.++|+.|.+.+.  ++|||+++++.++..++......++   +...++.-|.|++|+|||.+||.++.+.++++||+
T Consensus        19 ~~~n~ep~gP~ikTe--sIPGPks~~l~kel~~v~~t~~v~F---~~dYEkS~GNYlvDvDGN~lLDvYsQIsSvplGYn   93 (484)
T KOG1405|consen   19 VDVNFEPDGPSIKTE--SIPGPKSQELKKELDKVQDTEAVHF---FVDYEKSIGNYLVDVDGNRLLDVYSQISSVPLGYN   93 (484)
T ss_pred             cccccCCCCCccccc--cCCCchhHHHHHHHhHhhcccceEE---ehhhhhhcCceEEecCCCeeehhhhhhcccccCCC
Confidence            344559999988865  5999999999999888876543333   25667889999999999999999999999999999


Q ss_pred             CHHHHHHHHH-HHhh-ccccc--cccCC-hHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhcc---------
Q 011777          114 HPDVLNAIFE-QSKL-LQHAT--TIYLH-HAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLST---------  179 (477)
Q Consensus       114 ~p~v~~Av~~-~l~~-~~~~~--~~~~~-~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~---------  179 (477)
                      ||.++++... +..+ +....  ..++. +..+.+.+.|....|.+.+.|++.-+|+.|||.|+|.|..+-         
T Consensus        94 ~P~LvK~a~~p~~~~~lvnRPALg~fP~kd~~~~l~~~ll~~APKG~~~v~tm~cGs~aNEnA~K~afiwy~~k~rg~~~  173 (484)
T KOG1405|consen   94 NPALVKAAQQPQNATMLVNRPALGNFPPKDFAEKLRQSLLSIAPKGQKQVITMLCGSCANENAYKTAFIWYRAKERGQAG  173 (484)
T ss_pred             CHHHHHHhcChHHHHHHhccccccCCChhhHHHHHHHHHHhhCcchHHHHHHHhccccccHHHHHHHHHHHHhhcCCCCC
Confidence            9999998753 2222 22111  12332 234445555666678888999999999999999999885431         


Q ss_pred             -----------------CCceEEEEccCccCCcccccccccC-CCCCCCCCCCCeeeecCCCCcCCCCCC-------CHH
Q 011777          180 -----------------GNLGMIALRNAYHGGSSGTIGLTAL-NTWKYPIPQGEIHHVVNPDPYHGSFGS-------DAA  234 (477)
Q Consensus       180 -----------------~~~~ii~~~~~yhG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  234 (477)
                                       +.-.|++|.++|||++.+.++.+.. +.++..+|..+|.+.++|. |+.|.+.       .+.
T Consensus       174 ~s~~e~eScm~n~aPg~P~lsvlsF~gaFHGR~~g~lstT~SKpIHKldiPaFdWPiA~fP~-ykYPLdenv~~N~ked~  252 (484)
T KOG1405|consen  174 FSAEELESCMINQAPGAPDLSVLSFKGAFHGRTFGSLSTTHSKPIHKLDIPAFDWPIAPFPR-YKYPLDENVAENKKEDQ  252 (484)
T ss_pred             CCHHHHHHHHhcCCCCCCceeeeeeccccccccccccccccCccccccCCCCCCCCCCCCcc-ccCChhhhhhhhhhhhh
Confidence                             1237999999999999999999864 4678888888888888775 5556543       245


Q ss_pred             HHHHHHHHHHhccC--CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCC
Q 011777          235 RYAQDLQDHIDFGT--SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV  312 (477)
Q Consensus       235 ~~~~~le~~i~~~~--~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv  312 (477)
                      .|++++|++|...+  ...+|++|+||||++||..-.+++|+++|+++|+|||+.+|+||||||-|-|| ++|+.++|++
T Consensus       253 ~Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTG-k~WaHehw~l  331 (484)
T KOG1405|consen  253 GCLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATG-KFWAHEHWNL  331 (484)
T ss_pred             hHHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccC-ceeeehhcCC
Confidence            68999999998543  34799999999999999999999999999999999999999999999999999 8999999988


Q ss_pred             --CcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 011777          313 --IPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRT  390 (477)
Q Consensus       313 --~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~  390 (477)
                        .||+|||||-|-.|   |+ .-.++++-. ....+++||.|.|.-.....+++++|.++++.+++...|+.|..+|.+
T Consensus       332 ~~PpD~vTFSKK~q~g---Gf-fh~~~frpn-~pYrifNTWmGdP~k~lll~~vv~~I~~~~Ll~n~~~vG~~l~~gL~~  406 (484)
T KOG1405|consen  332 DSPPDVVTFSKKFQTG---GF-FHDEEFRPN-EPYRIFNTWMGDPSKNLLLEEVVQEIKREDLLNNVAHVGKALLKGLLE  406 (484)
T ss_pred             CCCccceehhhhhhcC---cc-ccCcccCCC-chHHHhhhhcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence              58999999999854   43 333333211 123467999999999999999999999999999999999999999999


Q ss_pred             HHHhCC-CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHH
Q 011777          391 LQERHD-IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDA  469 (477)
Q Consensus       391 l~~~~~-~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~  469 (477)
                      +.+++| .+..+||+|.|+.+++        |.+..-+.+...++-+|+.++.+|  ...|||+|+++.++...+-++++
T Consensus       407 Lq~~~p~~~~~~RGrGTF~a~d~--------ps~~~Rdk~i~~~~~nGv~~GGCg--~~siRfRPsLvf~~~Ha~i~l~~  476 (484)
T KOG1405|consen  407 LQAKYPGKINNLRGRGTFIAWDC--------PSGSIRDKLILIARLNGVNLGGCG--DKSIRFRPSLVFRKHHADIFLDI  476 (484)
T ss_pred             HHHhCchhhhcccccceEEEEeC--------CChHHHHHHHHHHHHcCceecccc--cceeeeccceeehhhhHHHHHHH
Confidence            999996 5778999999999998        444556788999999999998765  56899999999999999999999


Q ss_pred             HHHHHhhC
Q 011777          470 LDYSMSKL  477 (477)
Q Consensus       470 l~~~l~~l  477 (477)
                      |+++++.+
T Consensus       477 ~~k~l~~l  484 (484)
T KOG1405|consen  477 FDKILAGL  484 (484)
T ss_pred             HHHHhccC
Confidence            99998754

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=100.00  E-value=5.2e-50  Score=405.09  Aligned_cols=365  Identities=38%  Similarity=0.625  Sum_probs=304.9

Q ss_pred             cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCC
Q 011777           77 QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLK  156 (477)
Q Consensus        77 ~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~  156 (477)
                      +.|+.+++++|.++||.||++||||.+|+++++|||+||.|.+++.+++++..+....|.++...+|+++|+++++  .+
T Consensus         8 ~~~~~~~~~~g~~~~~~~g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--~~   85 (379)
T TIGR00707         8 RLPVKIVRGKGAYVYDVNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHVSNLYYTEPQEELAEKLVEHSG--AD   85 (379)
T ss_pred             CCCccEEEeecCEEEeCCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCC--CC
Confidence            4689999999999999999999999999999999999999999999999886554455678889999999999985  46


Q ss_pred             EEEEeCChHHHHHHHHHHHHhccC-----CceEEEEccCccCCcccccccccCCCCCCCCCC--CCeeeecCCCCcCCCC
Q 011777          157 VVYFVNSGTEANELAMLMARLSTG-----NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ--GEIHHVVNPDPYHGSF  229 (477)
Q Consensus       157 ~v~~~~sGseA~~~Al~~ar~~~~-----~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  229 (477)
                      ++++++||+||++.++++++.+++     +++|++++++|||+...+...++...+......  ..+...        ++
T Consensus        86 ~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  157 (379)
T TIGR00707        86 RVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYA--------PY  157 (379)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceee--------CC
Confidence            999999999999999999887665     689999999999999888777654322111000  111111        12


Q ss_pred             CCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccc
Q 011777          230 GSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET  309 (477)
Q Consensus       230 ~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~  309 (477)
                      + |    .+++++.+.    +++++|+++|+++++|.++++.+++++|.++|++||+++|+||+|++|+++| ..+.++.
T Consensus       158 ~-d----~~~l~~~~~----~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g-~~~~~~~  227 (379)
T TIGR00707       158 N-D----IESLKKAID----DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTG-KFFAYEH  227 (379)
T ss_pred             C-C----HHHHHHHhh----hCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc-hhhhHHh
Confidence            2 1    477777775    3678999999999999877899999999999999999999999999999988 5555566


Q ss_pred             cCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 011777          310 QGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLR  389 (477)
Q Consensus       310 ~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~  389 (477)
                      .++.||+++|||++++|+|+||+++++++++.+....+..+|+.|+++++++.++|+.++.+++.+++++++++++++|.
T Consensus       228 ~~~~~d~~t~sK~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l~  307 (379)
T TIGR00707       228 YGIEPDIITLAKGLGGGVPIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLE  307 (379)
T ss_pred             cCCCCCEEEEcccccCCcccEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999887667788999999999999999988777788999999999999998


Q ss_pred             HHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHH
Q 011777          390 TLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDA  469 (477)
Q Consensus       390 ~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~  469 (477)
                      ++....+. ..+++.|.++++++..+          ..++.+.|+++||++.+.+  .+++||+|++.++++++++++++
T Consensus       308 ~~~~~~~~-~~~~~~g~~~~~~~~~~----------~~~~~~~l~~~Gv~v~~~~--~~~lRi~~~~~~t~~~i~~~~~~  374 (379)
T TIGR00707       308 ELGKNYPN-KEVRGKGLMLGIELEAP----------CKDIVKKALEKGLLVNCAG--PKVLRFLPPLIITKEEIDEAVSA  374 (379)
T ss_pred             HHHhhCCC-CccccCceEEEEEecCc----------HHHHHHHHHHCCcEEeeCC--CCEEEEECCCcCCHHHHHHHHHH
Confidence            87555443 44566788989887321          3578888999999999864  47899999999999999999999


Q ss_pred             HHHHH
Q 011777          470 LDYSM  474 (477)
Q Consensus       470 l~~~l  474 (477)
                      |++++
T Consensus       375 l~~~~  379 (379)
T TIGR00707       375 LEEAI  379 (379)
T ss_pred             HHHhC
Confidence            98764

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK07505 hypothetical protein; Provisional

Probab=100.00  E-value=8.1e-39  Score=325.36  Aligned_cols=348  Identities=15%  Similarity=0.182  Sum_probs=248.6

Q ss_pred             CceeEEeeeccEEEeCCCCEEEeecCCcccccCC-CCCHHHHHHHHHHHhhcc--c-ccc--ccCChHHHHHHHHHHhhC
Q 011777           78 KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCG-HCHPDVLNAIFEQSKLLQ--H-ATT--IYLHHAIADFAEALASKM  151 (477)
Q Consensus        78 ~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lG-h~~p~v~~Av~~~l~~~~--~-~~~--~~~~~~~~~l~~~La~~~  151 (477)
                      .++.+++|+|+++||.||++||||.+.   ..+| |+||+|++|+.+|+++..  + ...  .+.++...+++++|++++
T Consensus        28 ~~~~~~~~~G~~~~d~~g~~~ld~~s~---~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~  104 (402)
T PRK07505         28 NGLTVGEREGILITLADGHTFVNFVSC---SYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELF  104 (402)
T ss_pred             ccceeeccCCccEEecCCceEEEeecC---CccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHh
Confidence            457899999999999999999999883   4788 999999999999998743  2 111  234677899999999998


Q ss_pred             CCCCCEEEEeCChHHHHHHHHHHHHh--cc-CCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCC
Q 011777          152 PGNLKVVYFVNSGTEANELAMLMARL--ST-GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGS  228 (477)
Q Consensus       152 ~~~~~~v~~~~sGseA~~~Al~~ar~--~~-~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (477)
                      +.   ++++++||++|++.++++++.  ++ ++.++|+++++|||........      ...  ..++..++.+      
T Consensus       105 ~~---~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~------~~~--~~~v~~~~~~------  167 (402)
T PRK07505        105 GA---SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGI------CAD--ETEVETIDHN------  167 (402)
T ss_pred             CC---CEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhh------hhc--CCeEEEeCCC------
Confidence            65   577788999999999998764  23 5667999999999843211110      000  1133333321      


Q ss_pred             CCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcc--cCccCCCCCCcc
Q 011777          229 FGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQ--TGFGRTGSHYWG  306 (477)
Q Consensus       229 ~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~--~gfgr~G~~~~~  306 (477)
                         |    .++++++++   ++..+++++||++++|+ +.+    +++|.++|++||++||+||+|  ++||++| ..+.
T Consensus       168 ---d----~~~l~~~~~---~~~~~~vl~~p~~~~G~-~~~----~~~i~~l~~~~~~~li~DEa~~~~~~g~~g-~~~~  231 (402)
T PRK07505        168 ---D----LDALEDICK---TNKTVAYVADGVYSMGG-IAP----VKELLRLQEKYGLFLYIDDAHGLSIYGKNG-EGYV  231 (402)
T ss_pred             ---C----HHHHHHHHh---cCCCEEEEEecccccCC-cCC----HHHHHHHHHHcCCEEEEECcccccCcCCCC-CchH
Confidence               1    477888775   24578999999988755 555    899999999999999999998  6789988 5666


Q ss_pred             ccccCC-Cccee----eecccccCccceEEEEe-CHHHHHhhcccccccCCCCc--HHHHHHHHHHHHhhchhhHHHHHH
Q 011777          307 FETQGV-IPDIV----TMAKGIGNGLPLGAVVT-TPEIANVMAQKIQFNTFGGN--PVCSAGGLAVLRVIDKERRQAHCA  378 (477)
Q Consensus       307 ~~~~gv-~pDiv----t~sK~lg~G~pig~v~~-~~~~~~~~~~~~~~~t~~~~--~~~~aaa~a~l~~l~~~~~~~~~~  378 (477)
                      .+++++ .||.+    |+||+++++  .|+++. ++++.+.+....+..||+++  +++++++.++++.+.++.+.+.  
T Consensus       232 ~~~~~~~~~d~~i~~~s~sK~~~~~--Gg~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~--  307 (402)
T PRK07505        232 RSELDYRLNERTIIAASLGKAFGAS--GGVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQL--  307 (402)
T ss_pred             HHHcCCCCCCCeEEEEechhhhhcc--CeEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHH--
Confidence            677776 67744    799999853  267664 78888888766666777655  6899999999986655443332  


Q ss_pred             HHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-----CCCEEEEe
Q 011777          379 DVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-----HGNVFRIK  453 (477)
Q Consensus       379 ~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi~  453 (477)
                        .++++++++.+...  ....+++.++++......       .......+.+.|+++||++.+...     ..+++||+
T Consensus       308 --~~~l~~~~~~~~~~--~~~~~~g~~~~i~~~~~~-------~~~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~  376 (402)
T PRK07505        308 --QQKLQNNIALFDSL--IPTEQSGSFLPIRLIYIG-------DEDTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIM  376 (402)
T ss_pred             --HHHHHHHHHHHHHH--HHhcCCCCCCCEEEEEeC-------CHHHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEe
Confidence              23333333322111  012235556554322211       112356788999999999987521     23689999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHhh
Q 011777          454 PPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       454 p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      |++.+|++|+++++++|++++++
T Consensus       377 ~~~~~t~eei~~~~~~l~~~l~~  399 (402)
T PRK07505        377 FRASHTNDEIKRLCSLLKEILDE  399 (402)
T ss_pred             cCccCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999998864

>PLN02822 serine palmitoyltransferase

Probab=100.00  E-value=4.8e-36  Score=309.34  Aligned_cols=354  Identities=13%  Similarity=0.073  Sum_probs=261.0

Q ss_pred             eeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccc-----cccCChHHHHHHHHHHhhCCCC
Q 011777           80 LNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT-----TIYLHHAIADFAEALASKMPGN  154 (477)
Q Consensus        80 ~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~-----~~~~~~~~~~l~~~La~~~~~~  154 (477)
                      +++.+++|.+++ .||++||||.++.+....  .||+|++++.++++++...+     ..+.++...+|+++|+++++. 
T Consensus        94 ~~~~~~~G~~i~-~~G~~~id~~s~~~lgl~--~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~-  169 (481)
T PLN02822         94 PVLESAAGPHTI-INGKDVVNFASANYLGLI--GNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGT-  169 (481)
T ss_pred             CceecCCCCeEE-ECCceEEEeECCCcCCCC--CCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCC-
Confidence            478889999999 899999999988664322  58999999999999854321     123567799999999999985 


Q ss_pred             CCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHH
Q 011777          155 LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAA  234 (477)
Q Consensus       155 ~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (477)
                      .+.++|++|++ ++..+++   .++++.++|++++.||+.....+.+.+.          .+..+        +++ |  
T Consensus       170 ~~~i~~s~G~~-a~~sai~---a~~~~gd~Ii~d~~~H~s~~~~~~ls~~----------~~~~~--------~~n-d--  224 (481)
T PLN02822        170 PDSILYSYGLS-TIFSVIP---AFCKKGDIIVADEGVHWGIQNGLYLSRS----------TIVYF--------KHN-D--  224 (481)
T ss_pred             CCEEEECCHHH-HHHHHHH---HhCCCCCEEEEeCCccHHHHHHHHHcCC----------eEEEE--------CCC-C--
Confidence            36788887666 6777777   4467778888999999887655554432          11111        111 1  


Q ss_pred             HHHHHHHHHHhccC-----CCCe-eEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc--CccCCCCCCcc
Q 011777          235 RYAQDLQDHIDFGT-----SGKV-AGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT--GFGRTGSHYWG  306 (477)
Q Consensus       235 ~~~~~le~~i~~~~-----~~~~-a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~--gfgr~G~~~~~  306 (477)
                        .++++..++...     .+++ ++|++|++++++|.+.+    |++|+++|++||++||+||+|+  .+|++| .. .
T Consensus       225 --~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~----L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G-~G-~  296 (481)
T PLN02822        225 --MESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAP----LDEIVRLKEKYRFRVLLDESNSFGVLGKSG-RG-L  296 (481)
T ss_pred             --HHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCC-CC-h
Confidence              234444443211     1234 89999999999998888    9999999999999999999998  446667 33 4


Q ss_pred             ccccCC---Ccceee--ecccccC-ccceEEEEeCHHHHHhhcccccccCCCCc--HHHHHHHHHHHHhhch-hhHHHHH
Q 011777          307 FETQGV---IPDIVT--MAKGIGN-GLPLGAVVTTPEIANVMAQKIQFNTFGGN--PVCSAGGLAVLRVIDK-ERRQAHC  377 (477)
Q Consensus       307 ~~~~gv---~pDivt--~sK~lg~-G~pig~v~~~~~~~~~~~~~~~~~t~~~~--~~~~aaa~a~l~~l~~-~~~~~~~  377 (477)
                      .+++++   .+|+++  |||++|. |   |++++++++++.+....++.+|+++  |..++|++++|+.+++ +++.+++
T Consensus       297 ~e~~~v~~~~~dii~~s~sKalg~~G---G~i~g~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l  373 (481)
T PLN02822        297 SEHFGVPIEKIDIITAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKL  373 (481)
T ss_pred             HHHcCCCCCCCeEEEecchhhhhhCC---eEEEcCHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            577887   689887  7899983 5   8999999999998877778899877  8889999999998765 6788999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccC--CC-----CCE
Q 011777          378 ADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGG--LH-----GNV  449 (477)
Q Consensus       378 ~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~--~~-----~~~  449 (477)
                      ++++++++++|+++.   ++.....+.+.++.+.+.........+.....++++.|+ ++||++.++.  .+     ...
T Consensus       374 ~~~~~~l~~~L~~~~---g~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~  450 (481)
T PLN02822        374 KENIALLHKGLSDIP---GLSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVG  450 (481)
T ss_pred             HHHHHHHHHHHHhcC---CcccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCc
Confidence            999999999998752   221222345667777773211111112233567888887 8899998652  11     246


Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          450 FRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       450 iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +|++.+..+|++||++++++|++++.+
T Consensus       451 lRi~is~~~t~edI~~~~~~l~~~~~~  477 (481)
T PLN02822        451 IRLFVSAGHTESDILKASESLKRVAAS  477 (481)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998765

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=100.00  E-value=7.4e-34  Score=289.36  Aligned_cols=331  Identities=20%  Similarity=0.198  Sum_probs=246.1

Q ss_pred             CCCEEEeecCCcccccCCC-CCHHHHHHHHHHHhhccccc-----cccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGH-CHPDVLNAIFEQSKLLQHAT-----TIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEA  167 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh-~~p~v~~Av~~~l~~~~~~~-----~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA  167 (477)
                      +|+++|+|+++.+   ||. +||+|++|+.++++++.+..     ..+.++...+|+++|+++++.  +.++|++||++|
T Consensus        43 ~~~~~~~~~sn~y---lgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~--~~~~~~~SG~~A  117 (406)
T PRK13393         43 GPREVTVWCSNDY---LGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGK--EAALLFTSGYVS  117 (406)
T ss_pred             CCccEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCC--CcEEEeCCcHHH
Confidence            4689999998765   787 69999999999999865421     113345789999999999964  678999999999


Q ss_pred             HHHHHH-HHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777          168 NELAML-MARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF  246 (477)
Q Consensus       168 ~~~Al~-~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~  246 (477)
                      |+.|++ +++.+  ++++|+++..||+.+...+...+..          +..++        ++ |    .++++++++.
T Consensus       118 n~~ai~~l~~~~--~g~~I~~~~~~H~s~~~~~~~~g~~----------~~~~~--------~~-d----~~~l~~~l~~  172 (406)
T PRK13393        118 NWAALSTLGSRL--PGCVILSDELNHASMIEGIRHSRAE----------KRIFR--------HN-D----PADLERKLSD  172 (406)
T ss_pred             HHHHHHHhhcCC--CCCEEEEccchhHHHHHHHHHcCCe----------EEEeC--------CC-C----HHHHHHHHHh
Confidence            999999 45432  3468888999999877665443211          11111        11 1    3667777764


Q ss_pred             cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-Cc-cCCCCCCccccccCCC--ccee--eec
Q 011777          247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GF-GRTGSHYWGFETQGVI--PDIV--TMA  320 (477)
Q Consensus       247 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gf-gr~G~~~~~~~~~gv~--pDiv--t~s  320 (477)
                      ..++++++|++|++++++|.+.+    +++|.++|++||+++|+||+|+ |+ |++| ..+ .+++++.  +|++  |||
T Consensus       173 ~~~~~~~~v~~~~v~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G-~g~-~~~~~~~~~~~i~~~tls  246 (406)
T PRK13393        173 LDPHRPKLVAFESVYSMDGDIAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRG-GGI-AEREGLADRLTIIEGTLA  246 (406)
T ss_pred             ccCCCCEEEEEcCCCCCCCchhC----HHHHHHHHHHcCCEEEEECCccccccCCCC-Cch-hhhcCCCCCCeEEEEeCc
Confidence            33346789999999999998888    9999999999999999999997 66 7777 333 3555654  5777  899


Q ss_pred             ccccC-ccceEEEEeCHHHHHhhcccccc--cCCCCcHHHHHHHHHHHHhhchhh-HHHHHHHHHHHHHHHHHHHHHhCC
Q 011777          321 KGIGN-GLPLGAVVTTPEIANVMAQKIQF--NTFGGNPVCSAGGLAVLRVIDKER-RQAHCADVGSHLLGRLRTLQERHD  396 (477)
Q Consensus       321 K~lg~-G~pig~v~~~~~~~~~~~~~~~~--~t~~~~~~~~aaa~a~l~~l~~~~-~~~~~~~~~~~l~~~L~~l~~~~~  396 (477)
                      |++|. |   ||+++++++++.+......  .+.+.+|.+++++.++|+.+++.. ..+++.++++++++.|+++  .++
T Consensus       247 Ka~g~~G---G~~~~~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~  321 (406)
T PRK13393        247 KAFGVMG---GYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKA--GIP  321 (406)
T ss_pred             hhhcccC---ceeeCCHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc--CCC
Confidence            99984 5   8889999998887654332  366788999999999999876432 3455667888888888764  222


Q ss_pred             CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHH-cCceeeccC----C-CCCEEEEeCCCCCcHHHHHHHHHHH
Q 011777          397 IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGG----L-HGNVFRIKPPMCFTKDDADFLVDAL  470 (477)
Q Consensus       397 ~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~----~-~~~~iRi~p~~~~t~e~i~~~l~~l  470 (477)
                         .+++.|.|+.+.+..        ......+.+.|++ +||++.+..    . ..+.+||+|++.+|++|+++++++|
T Consensus       322 ---~~~~~~~i~~v~~~~--------~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l  390 (406)
T PRK13393        322 ---HLPNPSHIVPVMVGD--------PVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQAL  390 (406)
T ss_pred             ---cCCCCCCeEEEEeCC--------HHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence               235678887775421        1235678888887 599997642    1 2368999999999999999999999


Q ss_pred             HHHHhh
Q 011777          471 DYSMSK  476 (477)
Q Consensus       471 ~~~l~~  476 (477)
                      ++++.+
T Consensus       391 ~~~~~~  396 (406)
T PRK13393        391 SEIWAR  396 (406)
T ss_pred             HHHHHh
Confidence            998764

>PRK09064 5-aminolevulinate synthase; Validated

Probab=100.00  E-value=2.6e-32  Score=278.32  Aligned_cols=331  Identities=19%  Similarity=0.212  Sum_probs=240.3

Q ss_pred             CCEEEeecCCcccccCCCC-CHHHHHHHHHHHhhccccc----cc-cCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHC-HPDVLNAIFEQSKLLQHAT----TI-YLHHAIADFAEALASKMPGNLKVVYFVNSGTEAN  168 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~-~p~v~~Av~~~l~~~~~~~----~~-~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~  168 (477)
                      |++++||+++.+   ||++ ||+|++|+.+++++..+..    .. +.++...+|+++|+++++.  +..++++||++||
T Consensus        45 ~~~~~~~~s~dy---lgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~--~~~~~~~sG~~an  119 (407)
T PRK09064         45 EREVTVWCSNDY---LGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGK--EAALVFTSGYVSN  119 (407)
T ss_pred             CceEEEEECCCC---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCC--CcEEEECcHHHHH
Confidence            699999987754   7876 9999999999998864321    11 2467789999999999863  5678889999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      +.+++++.... ++.+++.+..+|+.....+...+.+          +...+        .+ |    .++++++++...
T Consensus       120 ~~ai~~l~~~~-~~~~i~~~~~~h~s~~~~~~~~~~~----------~~~~~--------~~-d----~~~le~~l~~~~  175 (407)
T PRK09064        120 DATLSTLAKLI-PDCVIFSDELNHASMIEGIRRSRCE----------KHIFR--------HN-D----VAHLEELLAAAD  175 (407)
T ss_pred             HHHHHHHhCCC-CCCEEEEeCcchHHHHHHHHHcCCc----------EEEEC--------CC-C----HHHHHHHHHhcc
Confidence            99999876442 3456666655676543333222111          11111        11 1    477888876433


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-C-ccCCCCCCccccccCC--Cccee--eeccc
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-G-FGRTGSHYWGFETQGV--IPDIV--TMAKG  322 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-g-fgr~G~~~~~~~~~gv--~pDiv--t~sK~  322 (477)
                      ++++++|++|++++++|.+.+    +++|.++|++||++||+||+|+ | ||++| ..+ .++.++  .+|++  ||||+
T Consensus       176 ~~~~~~v~~~~v~s~~G~~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g-~g~-~~~~~~~~~~div~~t~sKa  249 (407)
T PRK09064        176 PDRPKLIAFESVYSMDGDIAP----IAEICDLADKYNALTYLDEVHAVGMYGPRG-GGI-AERDGLMDRIDIIEGTLAKA  249 (407)
T ss_pred             CCCCeEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEECCCcccccCCCC-CCh-HHhcCCCCCCeEEEEecchh
Confidence            346789999999999998887    9999999999999999999998 5 57777 333 345554  46887  89999


Q ss_pred             ccC-ccceEEEEeCHHHHHhhcccc--cccCCCCcHHHHHHHHHHHHhhchh-hHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 011777          323 IGN-GLPLGAVVTTPEIANVMAQKI--QFNTFGGNPVCSAGGLAVLRVIDKE-RRQAHCADVGSHLLGRLRTLQERHDII  398 (477)
Q Consensus       323 lg~-G~pig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a~l~~l~~~-~~~~~~~~~~~~l~~~L~~l~~~~~~~  398 (477)
                      +|. |   |++++++++++.+....  +..+.+.+|.++++++++++.+++. ...+++.++++++++.|+++  .+.. 
T Consensus       250 ~g~~G---G~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~-  323 (407)
T PRK09064        250 FGVMG---GYIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAA--GIPV-  323 (407)
T ss_pred             hhccC---ceEecCHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc--CCCC-
Confidence            984 5   88999999988776432  2235578899999999999988764 34577888899999888775  2222 


Q ss_pred             eeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHH-cCceeeccCC-----CCCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777          399 GDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGGL-----HGNVFRIKPPMCFTKDDADFLVDALDY  472 (477)
Q Consensus       399 ~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~-----~~~~iRi~p~~~~t~e~i~~~l~~l~~  472 (477)
                        +...+.++.+.+.        ......++.+.|++ +||++.+...     ..+++||+|++.+|++|++++++.|++
T Consensus       324 --~~~~~~iv~i~~~--------~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~  393 (407)
T PRK09064        324 --MPNESHIVPVMVG--------DPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVE  393 (407)
T ss_pred             --CCCCCCEEEEEeC--------CHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence              2234666666552        11235678888875 5999976421     236899999999999999999999999


Q ss_pred             HHhh
Q 011777          473 SMSK  476 (477)
Q Consensus       473 ~l~~  476 (477)
                      ++++
T Consensus       394 ~~~~  397 (407)
T PRK09064        394 VWAR  397 (407)
T ss_pred             HHHH
Confidence            8764

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=100.00  E-value=3.5e-32  Score=276.83  Aligned_cols=333  Identities=19%  Similarity=0.181  Sum_probs=241.3

Q ss_pred             CCCCEEEeecCCcccccCCC-CCHHHHHHHHHHHhhcccccc-----ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHH
Q 011777           93 ENGRRYLDAFAGIVTVSCGH-CHPDVLNAIFEQSKLLQHATT-----IYLHHAIADFAEALASKMPGNLKVVYFVNSGTE  166 (477)
Q Consensus        93 ~dG~~ylD~~~g~~~~~lGh-~~p~v~~Av~~~l~~~~~~~~-----~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGse  166 (477)
                      .+|+++++|.++.+   ||. +||+|++|+.++++++.+...     .+.++...+|+++|+++++.  +..++++||++
T Consensus        42 ~~~~~~~~~~sn~y---lgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~--~~~l~~~sG~~  116 (402)
T TIGR01821        42 DGAKDVTVWCSNDY---LGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGK--ESALVFTSGYV  116 (402)
T ss_pred             CCCeeEEEeEccCc---CCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCC--CeEEEECchHH
Confidence            34699999988765   554 599999999999998653221     13467789999999999964  56889999999


Q ss_pred             HHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777          167 ANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF  246 (477)
Q Consensus       167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~  246 (477)
                      ||+.+++++... .++.+|+.+..||+.....+...+.+          +...+        ++ |    .++++++++.
T Consensus       117 an~~ai~~l~~~-~~~~~v~~~~~~h~s~~~~~~~~g~~----------~~~~~--------~~-d----~~~l~~~l~~  172 (402)
T TIGR01821       117 ANDATLATLAKI-IPGCVIFSDELNHASMIEGIRHSGAE----------KFIFR--------HN-D----VAHLEKLLQS  172 (402)
T ss_pred             HHHHHHHHhhCC-CCCCEEEEcchHhHHHHHHHHHcCCe----------EEEEC--------CC-C----HHHHHHHHHh
Confidence            999999987643 23567777788998765544432211          11111        11 1    3677877764


Q ss_pred             cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-Cc-cCCCCCCccccccCC--Cccee--eec
Q 011777          247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GF-GRTGSHYWGFETQGV--IPDIV--TMA  320 (477)
Q Consensus       247 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gf-gr~G~~~~~~~~~gv--~pDiv--t~s  320 (477)
                      ..++++++|++|++++++|.+.+    +++|.++|++||+++|+||+|+ |+ |..| .. ..+++++  .+|++  |||
T Consensus       173 ~~~~~~~~v~~e~~~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g-~g-~~~~~~~~~~~div~~t~s  246 (402)
T TIGR01821       173 VDPNRPKIIAFESVYSMDGDIAP----IEEICDLADKYGALTYLDEVHAVGLYGPRG-GG-IAERDGLMHRIDIIEGTLA  246 (402)
T ss_pred             ccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEeCcccccccCCCC-Cc-cchhccCCCCCeEEEEech
Confidence            33346789999999999998877    9999999999999999999998 42 4444 21 1244554  46877  899


Q ss_pred             ccccC-ccceEEEEeCHHHHHhhcccc--cccCCCCcHHHHHHHHHHHHhhchh-hHHHHHHHHHHHHHHHHHHHHHhCC
Q 011777          321 KGIGN-GLPLGAVVTTPEIANVMAQKI--QFNTFGGNPVCSAGGLAVLRVIDKE-RRQAHCADVGSHLLGRLRTLQERHD  396 (477)
Q Consensus       321 K~lg~-G~pig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a~l~~l~~~-~~~~~~~~~~~~l~~~L~~l~~~~~  396 (477)
                      |++|+ |   ||+++++++++.+....  +..|.+.||.++++++++|+.+++. .+.++..+++++++++|+++  .++
T Consensus       247 Ka~g~~G---G~i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~  321 (402)
T TIGR01821       247 KAFGVVG---GYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEAL--GIP  321 (402)
T ss_pred             hhhccCC---ceeecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHc--CCC
Confidence            99984 5   78999999998876432  2245678899999999999987654 34566677888888888764  222


Q ss_pred             CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHH-cCceeeccC-----CCCCEEEEeCCCCCcHHHHHHHHHHH
Q 011777          397 IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGG-----LHGNVFRIKPPMCFTKDDADFLVDAL  470 (477)
Q Consensus       397 ~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~-----~~~~~iRi~p~~~~t~e~i~~~l~~l  470 (477)
                      .   +.+.+.++.+.+.        ......++.+.|++ +||++.+..     ...+++||+|++.+|++||++++++|
T Consensus       322 ~---~~~~~~i~~i~~~--------~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l  390 (402)
T TIGR01821       322 V---IPNPSHIVPVIIG--------DAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEAL  390 (402)
T ss_pred             c---CCCCCCEEEEEeC--------CHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHH
Confidence            2   2345677766542        11234568888865 599987641     12368999999999999999999999


Q ss_pred             HHHHhh
Q 011777          471 DYSMSK  476 (477)
Q Consensus       471 ~~~l~~  476 (477)
                      ++++++
T Consensus       391 ~~~~~~  396 (402)
T TIGR01821       391 LLVWDR  396 (402)
T ss_pred             HHHHHH
Confidence            998865

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=100.00  E-value=2.4e-31  Score=269.39  Aligned_cols=347  Identities=19%  Similarity=0.209  Sum_probs=243.5

Q ss_pred             ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCC-CCHHHHHHHHHHHhhccccc-----cccCChHHHHHHHHHHh
Q 011777           76 YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGH-CHPDVLNAIFEQSKLLQHAT-----TIYLHHAIADFAEALAS  149 (477)
Q Consensus        76 ~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~Av~~~l~~~~~~~-----~~~~~~~~~~l~~~La~  149 (477)
                      |+.-.++.+++|.+||+ +|++|||+.++.   ++|| ++|+|++++.+++.......     ..+..+...++++.+++
T Consensus        20 ~~~~~~~~~~~g~~~~~-~g~~~id~~~~~---~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~   95 (385)
T PRK05958         20 YRSLRPREGGAGRWLVV-DGRRMLNFASND---YLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAE   95 (385)
T ss_pred             CccccccccCCCceeEe-CCceEEEeeCCC---cccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHH
Confidence            33335788999999997 999999999874   4787 78999999999998643211     12345678899999999


Q ss_pred             hCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCC
Q 011777          150 KMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSF  229 (477)
Q Consensus       150 ~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (477)
                      +++.  +.++++++|++++..+++..  ..+++.|++. ..+|+.........+.          .+..++.+       
T Consensus        96 ~~~~--~~~i~~~~g~~~~~~~l~~~--~~~gd~V~~~-~~~~~~~~~~~~~~g~----------~~~~~~~~-------  153 (385)
T PRK05958         96 WFGA--ERALLFSSGYAANLAVLTAL--AGKGDLIVSD-KLNHASLIDGARLSRA----------RVRRYPHN-------  153 (385)
T ss_pred             HhCC--CcEEEECcHHHHHHHHHHHh--CCCCCEEEEe-CccCHHHHHHHHhcCC----------ceEEeCCC-------
Confidence            9863  56778888999999877644  2244555554 5556654443333221          11112111       


Q ss_pred             CCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccC--ccCCCCCCccc
Q 011777          230 GSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG--FGRTGSHYWGF  307 (477)
Q Consensus       230 ~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g--fgr~G~~~~~~  307 (477)
                        |    .++++++++.. .+++++++++++++++|.+.+    +++|.++|++||+++|+||+|+.  ++++|..+...
T Consensus       154 --d----~~~l~~~i~~~-~~~~~lvi~~~~~~~~G~~~~----l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~  222 (385)
T PRK05958        154 --D----VDALEALLAKW-RAGRALIVTESVFSMDGDLAP----LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAE  222 (385)
T ss_pred             --C----HHHHHHHHHhc-cCCCeEEEEEecccCCCCcCC----HHHHHHHHHHhCCEEEEECcccccccCCCCCchHHh
Confidence              1    47788887632 124788999999988887665    99999999999999999999963  34444211111


Q ss_pred             cccCCCcc---eeeecccccCccceEEEEeCHHHHHhhccc--ccccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHHH
Q 011777          308 ETQGVIPD---IVTMAKGIGNGLPLGAVVTTPEIANVMAQK--IQFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADVG  381 (477)
Q Consensus       308 ~~~gv~pD---ivt~sK~lg~G~pig~v~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~  381 (477)
                      ......+|   +.++||++++  +.|++++++++++.+...  .+..+.+.+++.++++.++|+.+++ +++.+++.+++
T Consensus       223 ~~~~~~~~~i~~~s~sK~~~~--~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~  300 (385)
T PRK05958        223 AGLAGEPDVILVGTLGKALGS--SGAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREPERRERLAALI  300 (385)
T ss_pred             hCCCCCCceEEEEechhhccc--CCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            11223455   5579999974  228999999988876532  2334456788888889899987765 36778888888


Q ss_pred             HHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-----CCCEEEEeCCC
Q 011777          382 SHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-----HGNVFRIKPPM  456 (477)
Q Consensus       382 ~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi~p~~  456 (477)
                      +++.+.|+++  ...   .+.+.|.++++.+.        ......++.+.|+++||.+.+...     ..+++||+|+.
T Consensus       301 ~~l~~~L~~~--~~~---~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~  367 (385)
T PRK05958        301 ARLRAGLRAL--GFQ---LMDSQSAIQPLIVG--------DNERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTA  367 (385)
T ss_pred             HHHHHHHHHc--CCC---cCCCCCCEEEEEeC--------CHHHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecC
Confidence            8898888875  122   23456778887762        123456788999999999976321     23689999999


Q ss_pred             CCcHHHHHHHHHHHHHHH
Q 011777          457 CFTKDDADFLVDALDYSM  474 (477)
Q Consensus       457 ~~t~e~i~~~l~~l~~~l  474 (477)
                      .++++|+++++++|++++
T Consensus       368 ~~~~~~i~~~l~~l~~~~  385 (385)
T PRK05958        368 AHTEADIDRLLEALAEAL  385 (385)
T ss_pred             CCCHHHHHHHHHHHHhcC
Confidence            999999999999998764

>PRK07179 hypothetical protein; Provisional

Probab=100.00  E-value=1.9e-31  Score=271.78  Aligned_cols=337  Identities=19%  Similarity=0.182  Sum_probs=238.4

Q ss_pred             cccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc---ccccccC--ChHHHHHHHHHHh
Q 011777           75 YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ---HATTIYL--HHAIADFAEALAS  149 (477)
Q Consensus        75 ~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~---~~~~~~~--~~~~~~l~~~La~  149 (477)
                      +.+.+++..++.|.+++|-+||+|||+.          +||+|++++.+++++..   +.+..+.  .+...+|+++|++
T Consensus        41 ~~~~~~~~~~~~g~~~~~~~~~~YL~l~----------~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~  110 (407)
T PRK07179         41 WNGKHLVLGKTPGPDAIILQSNDYLNLS----------GHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAA  110 (407)
T ss_pred             cCCceEEeecCCCCcEEEeecCCccCCC----------CCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHH
Confidence            3456889999999999999999999986          68999999999998752   2222232  3578899999999


Q ss_pred             hCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCC
Q 011777          150 KMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSF  229 (477)
Q Consensus       150 ~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (477)
                      +++.  +.++|++||++||+++++....  +++.|++. ...|.........            .+...++++.      
T Consensus       111 ~~g~--~~~~~~~sG~~An~~~l~~l~~--~g~~v~~~-~~~h~s~~~~~~~------------~g~~~~~~~~------  167 (407)
T PRK07179        111 FTGF--ESCLLCQSGWAANVGLLQTIAD--PNTPVYID-FFAHMSLWEGVRA------------AGAQAHPFRH------  167 (407)
T ss_pred             HhCC--CcEEEECCHHHHHHHHHHHhCC--CCCEEEEE-CCcCHHHHHHHHH------------CCCeEEEecC------
Confidence            9865  5678999999999999986643  34455543 3333322111111            1222222111      


Q ss_pred             CCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccC--ccCCCCCCccc
Q 011777          230 GSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG--FGRTGSHYWGF  307 (477)
Q Consensus       230 ~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g--fgr~G~~~~~~  307 (477)
                      + |    +++++++++.   .++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+.  +|++| ..+ +
T Consensus       168 ~-d----~~~l~~~l~~---~~~~lV~v~~v~n~tG~i~p----l~~I~~l~~~~~~~livDea~~~g~~g~~g-~g~-~  233 (407)
T PRK07179        168 N-D----VDHLRRQIER---HGPGIIVVDSVYSTTGTIAP----LADIVDIAEEFGCVLVVDESHSLGTHGPQG-AGL-V  233 (407)
T ss_pred             C-C----HHHHHHHHHh---cCCeEEEECCCCCCCCcccc----HHHHHHHHHHcCCEEEEECcccccCcCCCC-Cch-H
Confidence            1 1    4788888862   24689999999999998887    89999999999999999999973  24455 221 3


Q ss_pred             cccCCC--ccee--eecccccCccceEEEEeCHHHHHhhcccc----cccCCCCcHHHHHHHHHHHHhhchh-hHHHHHH
Q 011777          308 ETQGVI--PDIV--TMAKGIGNGLPLGAVVTTPEIANVMAQKI----QFNTFGGNPVCSAGGLAVLRVIDKE-RRQAHCA  378 (477)
Q Consensus       308 ~~~gv~--pDiv--t~sK~lg~G~pig~v~~~~~~~~~~~~~~----~~~t~~~~~~~~aaa~a~l~~l~~~-~~~~~~~  378 (477)
                      ..+++.  +|++  +++|++++  ++|++++++++++.+....    +++|+  ++..++++.++++.+... +..++++
T Consensus       234 ~~~~~~~~vdi~~~S~sK~~g~--~~G~l~~~~~~~~~~~~~~~~~~~~~t~--~~~~~aa~~aal~~~~~~~~~~~~l~  309 (407)
T PRK07179        234 AELGLTSRVHFITASLAKAFAG--RAGIITCPRELAEYVPFVSYPAIFSSTL--LPHEIAGLEATLEVIESADDRRARLH  309 (407)
T ss_pred             HhcCCCCCCCEEEeechHhhhc--cCeEEEeCHHHHHHHHHhCcCeeeCCCC--CHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            445553  4775  47899974  6899999999888775322    22333  345555666778776553 5778899


Q ss_pred             HHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceee----ccCC-CCCEEEEe
Q 011777          379 DVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVG----KGGL-HGNVFRIK  453 (477)
Q Consensus       379 ~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~~~-~~~~iRi~  453 (477)
                      ++.+++++.|.++  .+    .+.+.+.++++.+..        ......+.+.|.++||++.    +... ..+++||+
T Consensus       310 ~~~~~l~~~L~~~--g~----~v~~~~~i~~l~~~~--------~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis  375 (407)
T PRK07179        310 ANARFLREGLSEL--GY----NIRSESQIIALETGS--------ERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLS  375 (407)
T ss_pred             HHHHHHHHHHHHc--CC----CCCCCCCEEEEEeCC--------HHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEE
Confidence            9999999998775  22    233567788877521        1234678889999999732    3211 24789999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHhh
Q 011777          454 PPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       454 p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ++..+|++||++++++|++++++
T Consensus       376 ~~~~~t~edi~~~~~~l~~~~~~  398 (407)
T PRK07179        376 LNADLTASDLDRVLEVCREARDE  398 (407)
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999998764

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=100.00  E-value=6.8e-31  Score=266.12  Aligned_cols=348  Identities=15%  Similarity=0.128  Sum_probs=240.1

Q ss_pred             ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCC-CCHHHHHHHHHHHhhccccc-----cccCChHHHHHHHHHHh
Q 011777           76 YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGH-CHPDVLNAIFEQSKLLQHAT-----TIYLHHAIADFAEALAS  149 (477)
Q Consensus        76 ~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~Av~~~l~~~~~~~-----~~~~~~~~~~l~~~La~  149 (477)
                      |..|..+.+++|+||| .||++||||.++   ..+|| ++|++.+++.+++++..+..     ..+..+.+.++++++++
T Consensus        14 ~~~~~~~~~~~g~~~~-~~g~~~id~~~~---~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~   89 (385)
T TIGR01825        14 YISIRVLESAQGPRVR-VNGKEVINLSSN---NYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAK   89 (385)
T ss_pred             cccccccccCCCceEE-ECCceEEEeecc---CccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHH
Confidence            3467889999999999 999999999875   34789 89999999999988643211     22346778999999999


Q ss_pred             hCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCC
Q 011777          150 KMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSF  229 (477)
Q Consensus       150 ~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (477)
                      .++.  +..++.+||++|+..+++...  .+++.|++. ..+|+.........+            ......+     ..
T Consensus        90 ~~g~--~~~i~~~sG~~a~~~a~~~~~--~~gd~vi~~-~~~~~~~~~~~~~~g------------~~~~~~~-----~~  147 (385)
T TIGR01825        90 FKKT--EAALVFQSGFNTNQGVLSALL--RKGDIVLSD-ELNHASIIDGLRLTK------------ATKKIYK-----HA  147 (385)
T ss_pred             HhCC--CcEEEECcHHHHHHHHHHHhC--CCCCEEEEE-ccccHHHHHHHHhcC------------CceEEeC-----CC
Confidence            8764  345667788999998888653  345555554 455554433222221            1111110     01


Q ss_pred             CCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccC--ccCCCCCCccc
Q 011777          230 GSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG--FGRTGSHYWGF  307 (477)
Q Consensus       230 ~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g--fgr~G~~~~~~  307 (477)
                        |    .+++++.++.....++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+.  ++++| . ...
T Consensus       148 --d----~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~-~-~~~  215 (385)
T TIGR01825       148 --D----MDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAP----LPEIVELAERYGAVTYVDDAHGSGVMGEAG-R-GTV  215 (385)
T ss_pred             --C----HHHHHHHHHhhccCCCeEEEEecCCcCCCCccC----HHHHHHHHHHhCCEEEEECcccccCcCCCC-C-ccH
Confidence              1    366777766332246789999999999997776    89999999999999999999964  34444 2 112


Q ss_pred             cccCCCcc----eeeecccccCccceEEEEeCHHHHHhhccccc--ccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHH
Q 011777          308 ETQGVIPD----IVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQ--FNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADV  380 (477)
Q Consensus       308 ~~~gv~pD----ivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~--~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~  380 (477)
                      .++++.+|    +.+|||++++  +.||+++++++++.+.....  ..+...++..++++.++++.+.+ ++..+++.++
T Consensus       216 ~~~~~~~~~~i~~~s~sK~~~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~  293 (385)
T TIGR01825       216 HHFGLEDKVDIQVGTLSKAIGV--VGGYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDN  293 (385)
T ss_pred             hhcCCCcCCcEEEEeccHHhhc--CCCEEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            23333333    4689999964  33899999999888764322  11223567888888899987643 4577888888


Q ss_pred             HHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-----CCCCEEEEeCC
Q 011777          381 GSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-----LHGNVFRIKPP  455 (477)
Q Consensus       381 ~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~iRi~p~  455 (477)
                      ++++.+.|.++  ..+.   ....+.++++.+.        .......+.+.|+++||++...+     ...+++|++|+
T Consensus       294 ~~~l~~~L~~~--g~~~---~~~~~~~~~~~~~--------~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~  360 (385)
T TIGR01825       294 TRFFKAGLGKL--GYDT---GGSETPITPVVIG--------DEKAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPT  360 (385)
T ss_pred             HHHHHHHHHHc--CCCC---CCCCCCEEEEEEC--------CHHHHHHHHHHHHHCCcEEcccCCCCCCCCCceEEEEEc
Confidence            88898888775  2222   1233445555441        11234678889999999885321     12368999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhh
Q 011777          456 MCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       456 ~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +.++++++++++++|++++++
T Consensus       361 ~~~~~e~i~~~~~~l~~~~~~  381 (385)
T TIGR01825       361 AEHTKDDLDQALDAYEKVGKE  381 (385)
T ss_pred             CCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999998864

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.98  E-value=1.4e-29  Score=257.61  Aligned_cols=347  Identities=16%  Similarity=0.162  Sum_probs=239.9

Q ss_pred             ceeEEeeeccEEEeCCCCEEEeecCCcccccCCC-CCHHHHHHHHHHHhhcccccc-----ccCChHHHHHHHHHHhhCC
Q 011777           79 PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGH-CHPDVLNAIFEQSKLLQHATT-----IYLHHAIADFAEALASKMP  152 (477)
Q Consensus        79 p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~Av~~~l~~~~~~~~-----~~~~~~~~~l~~~La~~~~  152 (477)
                      +..+++++|.++||.+|+.||||.++.   .+|| ++|++.+++.+++++..+...     .+..+.+.+++++++++++
T Consensus        25 ~~~~~~~~~~~~~~~~g~~~i~l~~~~---~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g  101 (397)
T PRK06939         25 ERVITSPQGADITVADGKEVINFCANN---YLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLG  101 (397)
T ss_pred             cccccCCCCceEEecCCCeEEEeeccC---ccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhC
Confidence            356789999999999999999998763   3678 689999999999876432211     2345678899999999986


Q ss_pred             CCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCC
Q 011777          153 GNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSD  232 (477)
Q Consensus       153 ~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (477)
                      .+ +.+ ++++|++++..+++...  .+++.|++.++.|++..........             ..+.++.      . |
T Consensus       102 ~~-~~i-~~tsG~~a~~~~~~~l~--~~gd~vi~~~~~~~~~~~~~~~~~~-------------~~~~~~~------~-d  157 (397)
T PRK06939        102 TE-DAI-LYSSCFDANGGLFETLL--GKEDAIISDALNHASIIDGVRLCKA-------------KRYRYAN------N-D  157 (397)
T ss_pred             CC-cEE-EEcChHHHHHHHHHHhC--CCCCEEEEEhhhhHHHHHHHHhcCC-------------ceEEeCC------C-C
Confidence            53 444 55556999999887653  3667888888888765443322211             1111111      1 1


Q ss_pred             HHHHHHHHHHHHhcc--CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-Cc-cCCCCCCcccc
Q 011777          233 AARYAQDLQDHIDFG--TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GF-GRTGSHYWGFE  308 (477)
Q Consensus       233 ~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gf-gr~G~~~~~~~  308 (477)
                          .+++++.++..  ...++++|++++++++.|...+    +++|.++|++||++||+||+|+ |+ ++.| . ....
T Consensus       158 ----~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~----~~~l~~la~~~~~~li~De~~~~g~~~~~~-~-~~~~  227 (397)
T PRK06939        158 ----MADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENG-R-GTVE  227 (397)
T ss_pred             ----HHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCC----HHHHHHHHHHhCCEEEEECcccccCcCCCC-C-CHHH
Confidence                46777776531  1236788999889988886554    9999999999999999999995 33 3333 1 1223


Q ss_pred             ccCC--Cccee--eecccccCccceEEEEeCHHHHHhhcccccccCC--CCcHHHHHHHHHHHHhhch-hhHHHHHHHHH
Q 011777          309 TQGV--IPDIV--TMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTF--GGNPVCSAGGLAVLRVIDK-ERRQAHCADVG  381 (477)
Q Consensus       309 ~~gv--~pDiv--t~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~--~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~  381 (477)
                      ..++  .+|++  ++||++++ +++||+++++++++.+........+  +.++..++++.++++.+.+ +++.++++++.
T Consensus       228 ~~~~~~~~~i~~~S~sK~~~g-~r~G~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~  306 (397)
T PRK06939        228 HFGVMDRVDIITGTLGKALGG-ASGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENA  306 (397)
T ss_pred             HcCCCCCCcEEEEECHHHhCc-cCceEEEeCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3344  35666  79999964 5899999999999887653222222  2346667777888887654 45677788888


Q ss_pred             HHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-----CCCCEEEEeCCC
Q 011777          382 SHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-----LHGNVFRIKPPM  456 (477)
Q Consensus       382 ~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~iRi~p~~  456 (477)
                      +++++.|+++    +. ....+.+.++.+.+.        ......++.+.|+++||.+.+..     ...+++|+++++
T Consensus       307 ~~l~~~L~~~----~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~L~~~gI~v~~~~~~~~~~~~~~iRi~~~~  373 (397)
T PRK06939        307 RYFREGMTAA----GF-TLGPGEHPIIPVMLG--------DAKLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSA  373 (397)
T ss_pred             HHHHHHHHHc----CC-CcCCCCCCEEEEEEC--------CHHHHHHHHHHHHHCCceEeeeCCCCCCCCCceEEEEECC
Confidence            8888887664    21 112345556554431        12235678899999999887531     123689999999


Q ss_pred             CCcHHHHHHHHHHHHHHHhh
Q 011777          457 CFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       457 ~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .+++++|++++++|++++++
T Consensus       374 ~~~~~~i~~~l~~L~~~~~~  393 (397)
T PRK06939        374 AHTKEQLDRAIDAFEKVGKE  393 (397)
T ss_pred             CCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999998875

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.98  E-value=7.4e-30  Score=257.69  Aligned_cols=339  Identities=15%  Similarity=0.165  Sum_probs=235.1

Q ss_pred             EeecCCcccccCCC-CCHHHHHHHHHHHhhccccc--c--cc-CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHH
Q 011777           99 LDAFAGIVTVSCGH-CHPDVLNAIFEQSKLLQHAT--T--IY-LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAM  172 (477)
Q Consensus        99 lD~~~g~~~~~lGh-~~p~v~~Av~~~l~~~~~~~--~--~~-~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al  172 (477)
                      |||.++.+   ||. .||++++++.+++++....+  +  .| ......+|+++++++++.  +..++++||..|+..++
T Consensus         1 ~~f~s~dy---Lgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~--e~al~~~sG~~a~~~~i   75 (392)
T PLN03227          1 LNFATHDF---LSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGT--ESAILYSDGASTTSSTV   75 (392)
T ss_pred             CCCcCcCc---cCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCC--CcEEEecCcHHHHHHHH
Confidence            35555443   444 58999999999998733111  1  12 245688999999999965  46778888888888777


Q ss_pred             HHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc-----
Q 011777          173 LMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG-----  247 (477)
Q Consensus       173 ~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~-----  247 (477)
                      ...  ..+++.|++.++.|.....+. .+...          .+..+        +++ |    .+++++.++..     
T Consensus        76 ~~l--~~~GD~Vl~~~~~h~s~~~~~-~l~~~----------~~~~~--------~~~-d----~~~l~~~~~~i~~~~~  129 (392)
T PLN03227         76 AAF--AKRGDLLVVDRGVNEALLVGV-SLSRA----------NVRWF--------RHN-D----MKDLRRVLEQVRAQDV  129 (392)
T ss_pred             HHh--CCCCCEEEEeccccHHHHHHH-HHcCC----------eEEEe--------CCC-C----HHHHHHHHHHhhhhcc
Confidence            653  345677777776665443322 11110          11111        111 1    23344333211     


Q ss_pred             -----CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc--CccCCCCCCccccccCCCc----ce
Q 011777          248 -----TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT--GFGRTGSHYWGFETQGVIP----DI  316 (477)
Q Consensus       248 -----~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~--gfgr~G~~~~~~~~~gv~p----Di  316 (477)
                           ...++..|++||+++++|.+.+    +++|+++|++||+++|+||+|+  .+|++| . +..+++|+.|    |+
T Consensus       130 a~~~~~~~~t~~vi~E~v~~~~G~i~~----l~~i~~l~~~~g~~livDe~~~~g~~g~~G-~-g~~~~~g~~p~~~~Di  203 (392)
T PLN03227        130 ALKRKPTDQRRFLVVEGLYKNTGTLAP----LKELVALKEEFHYRLILDESFSFGTLGKSG-R-GSLEHAGLKPMVHAEI  203 (392)
T ss_pred             ccccccCCCcEEEEEcCCcCCCCcccC----HHHHHHHHHHcCCEEEEECcccccccCCCC-C-cHHHHcCCCCCCCceE
Confidence                 1135789999999999998887    9999999999999999999997  345555 3 5678899998    99


Q ss_pred             eeecccccCccceEEEEeCHHHHHhhcccccccCCCCc--HHHHHHHHHHHHh-hchhhHHHHHHHHHHHHHHHHHHHHH
Q 011777          317 VTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGN--PVCSAGGLAVLRV-IDKERRQAHCADVGSHLLGRLRTLQE  393 (477)
Q Consensus       317 vt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~--~~~~aaa~a~l~~-l~~~~~~~~~~~~~~~l~~~L~~l~~  393 (477)
                      +++|++-+.|++.|++++++++++.+....+..+|+++  |+.++|++++++. ++.+++.+++++++++++++|++  .
T Consensus       204 v~~slsk~~g~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~--~  281 (392)
T PLN03227        204 VTFSLENAFGSVGGMTVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTN--S  281 (392)
T ss_pred             EEeechhhhhccCcEEecCHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh--c
Confidence            98764433345558888999998877666677788876  8788888877755 45567899999999999999987  3


Q ss_pred             hCCCceeeecc--------ceeEEEEEeeCCCCCCc-cHHHHHHHHHHHHHcCceeeccC---------CCCCEEEEeCC
Q 011777          394 RHDIIGDVRGR--------GLMVGMELVTDRKEKTP-AKAETAVLFEKLRELGVLVGKGG---------LHGNVFRIKPP  455 (477)
Q Consensus       394 ~~~~~~~v~g~--------g~~~~i~~~~~~~~~~~-~~~~~~~~~~~l~~~Gv~v~~~~---------~~~~~iRi~p~  455 (477)
                      .++.+.++|+.        |+++++++.++...+.+ .......+.+.|+++|+++.+.+         .....+|++.+
T Consensus       282 ~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~  361 (392)
T PLN03227        282 SHPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVAN  361 (392)
T ss_pred             CCccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEec
Confidence            56667777763        55788888432111101 11123578899999999986422         11356899999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhh
Q 011777          456 MCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       456 ~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ..+|+|||++++++|++++++
T Consensus       362 ~~~t~eei~~~~~~l~~~~~~  382 (392)
T PLN03227        362 ASHTREDIDKLLTVLGEAVEA  382 (392)
T ss_pred             CCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999865

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.97  E-value=5.1e-29  Score=253.08  Aligned_cols=351  Identities=16%  Similarity=0.151  Sum_probs=242.4

Q ss_pred             ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCC-CHHHHHHHHHHHhhcc--ccccc---cCChHHHHHHHHHHh
Q 011777           76 YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHC-HPDVLNAIFEQSKLLQ--HATTI---YLHHAIADFAEALAS  149 (477)
Q Consensus        76 ~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~-~p~v~~Av~~~l~~~~--~~~~~---~~~~~~~~l~~~La~  149 (477)
                      ++.|..+.++.|.++++.+|++||||.++.   .||++ +|++++++.+++.+..  +..+.   +..+...++++.+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~---~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~   94 (393)
T TIGR01822        18 FKSERIITSPQGADIRVADGREVLNFCANN---YLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAA   94 (393)
T ss_pred             CCcccccccCCCceEEecCCceEEEeeCCC---ccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHH
Confidence            345677888999999999999999999885   46776 8999999999998732  12222   235567899999999


Q ss_pred             hCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCC
Q 011777          150 KMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSF  229 (477)
Q Consensus       150 ~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (477)
                      +++.  +.+++++||++|+..++...  ..+++.|++.++.|+....+...... .         ++. .  +      .
T Consensus        95 ~~g~--~~~ii~~~~~~a~~~~~~~l--~~~gd~vi~~~~~~~s~~~~~~~~~~-~---------~~~-~--~------~  151 (393)
T TIGR01822        95 FLGT--EDTILYASCFDANGGLFETL--LGAEDAIISDALNHASIIDGVRLCKA-K---------RYR-Y--A------N  151 (393)
T ss_pred             HhCC--CcEEEECchHHHHHHHHHHh--CCCCCEEEEeccccHHHHHHHHhcCC-c---------eEE-e--C------C
Confidence            9965  45777799999999877654  24567788877777654433222111 1         110 0  0      0


Q ss_pred             CCCHHHHHHHHHHHHhcc--CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCC-cc
Q 011777          230 GSDAARYAQDLQDHIDFG--TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHY-WG  306 (477)
Q Consensus       230 ~~~~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~-~~  306 (477)
                       .|    .+++++.++..  ...++++|+++++++++|.+.+    +++|.++|++||++||+||+|. +|..|... ..
T Consensus       152 -~d----~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~----l~~i~~la~~~~~~li~De~~~-~g~~~~~~~~~  221 (393)
T TIGR01822       152 -ND----MADLEAQLKEARAAGARHRLIATDGVFSMDGVIAP----LDEICDLADKYDALVMVDECHA-TGFLGPTGRGS  221 (393)
T ss_pred             -CC----HHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCC----HHHHHHHHHHcCCEEEEECCcc-ccCcCCCCCch
Confidence             11    47777777632  1226789999999999998776    9999999999999999999994 43322110 11


Q ss_pred             ccccCC--Cccee--eecccccCccceEEEEeCHHHHHhhcccccccCCC--CcHHHHHHHHHHHHhhch-hhHHHHHHH
Q 011777          307 FETQGV--IPDIV--TMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFG--GNPVCSAGGLAVLRVIDK-ERRQAHCAD  379 (477)
Q Consensus       307 ~~~~gv--~pDiv--t~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~--~~~~~~aaa~a~l~~l~~-~~~~~~~~~  379 (477)
                      .+..++  .+|++  ++||+++ |+++||+++++++++.+........++  .++..+++++++++.++. ++..+++++
T Consensus       222 ~~~~~~~~~~di~~~s~sK~l~-g~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~  300 (393)
T TIGR01822       222 HELCGVMGRVDIITGTLGKALG-GASGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWA  300 (393)
T ss_pred             HHhcCCCCCCeEEEEEChHHhh-CCCcEEEEeCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            123333  35666  6899987 478999999999998876532222232  356667778888887643 457788888


Q ss_pred             HHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-----CCCCEEEEeC
Q 011777          380 VGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-----LHGNVFRIKP  454 (477)
Q Consensus       380 ~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~iRi~p  454 (477)
                      +.+++++.|+++  ....   ..+.+.++.+.+.        ......++.+.|+++||.+....     .....+|+++
T Consensus       301 ~~~~l~~~L~~~--g~~~---~~~~~~~~~i~~~--------~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~iRis~  367 (393)
T TIGR01822       301 NTRYFRERMEAA--GFDI---KPADHPIIPVMLY--------DAVLAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQI  367 (393)
T ss_pred             HHHHHHHHHHHc--CCCC---CCCCCCEEEEEeC--------CHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEE
Confidence            888888888764  2221   1223455555442        12345678889999999886321     1124799999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhh
Q 011777          455 PMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       455 ~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +..+|++||++++++|++++++
T Consensus       368 ~~~~t~edi~~~~~~l~~~~~~  389 (393)
T TIGR01822       368 SAAHTEEQLDRAVEAFTRIGRE  389 (393)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998764

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.97  E-value=1.5e-28  Score=246.55  Aligned_cols=337  Identities=18%  Similarity=0.194  Sum_probs=229.6

Q ss_pred             EeeeccEEEeCCCCEEEeecCCcccccCCC-CCHHHHHHHHHHHhhcccccc-----ccCChHHHHHHHHHHhhCCCCCC
Q 011777           83 VEGKMQYLFDENGRRYLDAFAGIVTVSCGH-CHPDVLNAIFEQSKLLQHATT-----IYLHHAIADFAEALASKMPGNLK  156 (477)
Q Consensus        83 ~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~Av~~~l~~~~~~~~-----~~~~~~~~~l~~~La~~~~~~~~  156 (477)
                      .++.|.++. .+|++||||.+|   .++|| +||+|++++.+++++......     .+..+...++++.|+++++.  +
T Consensus         4 ~~~~~~~~~-~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~--~   77 (360)
T TIGR00858         4 DRGPGPEVV-RDGRRLLNFSSN---DYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGT--E   77 (360)
T ss_pred             ccCCCCeEE-ECCceEEecccC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC--C
Confidence            477899997 899999999997   46896 789999999999976332111     12246678899999998863  3


Q ss_pred             EEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHH
Q 011777          157 VVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARY  236 (477)
Q Consensus       157 ~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (477)
                      ..+++++|++++..+++.+.  .+++.|++.++.|..... .....+.          .+..++.+         |    
T Consensus        78 ~~i~~~~G~~~~~~~l~~~~--~~gd~v~~~~~~~~~~~~-~~~~~g~----------~~~~~~~~---------d----  131 (360)
T TIGR00858        78 AALLFSSGYLANVGVISALV--GKGDLILSDALNHASLID-GCRLSGA----------RVRRYRHN---------D----  131 (360)
T ss_pred             CEEEECchHHHHHHHHHHhC--CCCCEEEEEccccHHHHH-HHHhcCC----------ceEEecCC---------C----
Confidence            45566677899888776542  355667766655543322 2222111          11111111         1    


Q ss_pred             HHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCC-CccccccCCCcc
Q 011777          237 AQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH-YWGFETQGVIPD  315 (477)
Q Consensus       237 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~-~~~~~~~gv~pD  315 (477)
                      .+++++.++.....++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ ++..+.. ......+++.++
T Consensus       132 ~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~l~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~  206 (360)
T TIGR00858       132 VEHLERLLEKNRGERRKLIVTDGVFSMDGDIAP----LPQLVALAERYGAWLMVDDAHG-TGVLGEDGRGTLEHFGLKPE  206 (360)
T ss_pred             HHHHHHHHHHcccCCCeEEEEeCCccCCCCCcC----HHHHHHHHHHcCcEEEEECccc-ccCcCCCCCchHHhcCCCcc
Confidence            477888776322135788999998888887666    8999999999999999999997 3332211 111233444443


Q ss_pred             -----eeeecccccCccceEEEEeCHHHHHhhcccc--cccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHH
Q 011777          316 -----IVTMAKGIGNGLPLGAVVTTPEIANVMAQKI--QFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGR  387 (477)
Q Consensus       316 -----ivt~sK~lg~G~pig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~  387 (477)
                           +.++||++++  +.||+++++++++.+....  +..+.+.++..++++.++++.+.. ++..+++.++.+++.+.
T Consensus       207 ~~~i~i~s~sK~~~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~  284 (360)
T TIGR00858       207 PVDIQVGTLSKALGS--YGAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAG  284 (360)
T ss_pred             CCcEEEEechhhhhc--cCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence                 5589999986  2289999999888775432  222334667778888888886654 35678888888888888


Q ss_pred             HHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-----CCCEEEEeCCCCCcHHH
Q 011777          388 LRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-----HGNVFRIKPPMCFTKDD  462 (477)
Q Consensus       388 L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi~p~~~~t~e~  462 (477)
                      |.++    +. ......|.++++.+.        ......++.+.|+++||++.++..     .++++|++++..++++|
T Consensus       285 L~~~----~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~  351 (360)
T TIGR00858       285 LEAL----GF-TLMPSCTPIVPVIIG--------DNASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGD  351 (360)
T ss_pred             HHHc----CC-ccCCCCCCEEEEEeC--------CHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHH
Confidence            8764    21 112345778887762        122356788999999999975421     13689999999999999


Q ss_pred             HHHHHHHHH
Q 011777          463 ADFLVDALD  471 (477)
Q Consensus       463 i~~~l~~l~  471 (477)
                      +++++++|+
T Consensus       352 i~~~l~~l~  360 (360)
T TIGR00858       352 IDRLAEALK  360 (360)
T ss_pred             HHHHHHhhC
Confidence            999999873

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.97  E-value=1.7e-28  Score=246.43  Aligned_cols=340  Identities=16%  Similarity=0.133  Sum_probs=234.4

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhCC--CCCC-EEEEeCChHHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKMP--GNLK-VVYFVNSGTEANEL  170 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~~--~~~~-~v~~~~sGseA~~~  170 (477)
                      ...||+..|.+..   ..++.+++++.+++....  ++...+..+.++.+++++.+..+  ...+ .|++|+|++||+..
T Consensus        28 ~~vi~l~iG~Pd~---~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~  104 (393)
T COG0436          28 EDVIDLSIGEPDF---PTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFL  104 (393)
T ss_pred             CCEEEeCCCCCCC---CCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHH
Confidence            4678887776522   357889999999998763  33344556667777777777754  2333 49999999999999


Q ss_pred             HHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcC-CCCCCCHHHHHHHHHHHHhccCC
Q 011777          171 AMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYH-GSFGSDAARYAQDLQDHIDFGTS  249 (477)
Q Consensus       171 Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~  249 (477)
                      ++.....  +++.||+++|+|..+.......++..             +.++.... ..|.-|    .++|++.++    
T Consensus       105 ~~~a~~~--pGDeVlip~P~Y~~y~~~~~~~gg~~-------------v~v~l~~~~~~f~~d----~~~l~~~i~----  161 (393)
T COG0436         105 AFLALLN--PGDEVLIPDPGYPSYEAAVKLAGGKP-------------VPVPLDEEENGFKPD----LEDLEAAIT----  161 (393)
T ss_pred             HHHHhcC--CCCEEEEeCCCCcCHHHHHHhcCCEE-------------EEEeCCcCccCCcCC----HHHHHhhcC----
Confidence            9986644  67889999999988766655554422             12111000 122222    478888876    


Q ss_pred             CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCc-cccccC---CCcceeeecccccC
Q 011777          250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW-GFETQG---VIPDIVTMAKGIGN  325 (477)
Q Consensus       250 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~-~~~~~g---v~pDivt~sK~lg~  325 (477)
                      +++++|+++..+|++| .+.++++|++|.++|++||++||+||+|.+|.+.|..+. ..+..+   ...-+-+|||.++.
T Consensus       162 ~ktk~i~ln~P~NPTG-av~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~m  240 (393)
T COG0436         162 PKTKAIILNSPNNPTG-AVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGM  240 (393)
T ss_pred             ccceEEEEeCCCCCcC-cCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccc
Confidence            3677777766666666 567999999999999999999999999999988873122 222222   12234479999995


Q ss_pred             -ccceEEEEeC-HHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHH----HHHHHHHHHHHHHHHHHHhCCCce
Q 011777          326 -GLPLGAVVTT-PEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQA----HCADVGSHLLGRLRTLQERHDIIG  399 (477)
Q Consensus       326 -G~pig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~----~~~~~~~~l~~~L~~l~~~~~~~~  399 (477)
                       |||+||++++ +++++.+.......+++.+.++|.|+.++|+.-++.+..+    .++++++.+.+.|++    .+.+.
T Consensus       241 tGwRvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~----~~g~~  316 (393)
T COG0436         241 TGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNE----IGGLS  316 (393)
T ss_pred             cccceeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHh----cCCee
Confidence             9999999999 8888888766666778999999999999998642222333    344455555555444    34344


Q ss_pred             eee-ccceeE-EEEEeeCCCCCCccHHHHHHHHHHHHH-cCceeeccCCCC-----CEEEEeCCCCCcHHHHHHHHHHHH
Q 011777          400 DVR-GRGLMV-GMELVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGGLHG-----NVFRIKPPMCFTKDDADFLVDALD  471 (477)
Q Consensus       400 ~v~-g~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~-----~~iRi~p~~~~t~e~i~~~l~~l~  471 (477)
                      ... ..|.|+ ++++...        ....+++..|++ .||.+.||..++     +++||+  +..++++++++++++.
T Consensus       317 ~~~~p~Ga~Y~~~~i~~~--------~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis--~~~~~~~l~~a~~rl~  386 (393)
T COG0436         317 VVKPPEGAFYLFPKIPEL--------LDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLS--LATSEETLEEALRRLA  386 (393)
T ss_pred             eccCCCeeEEEEeecCCC--------CCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEE--EecCHHHHHHHHHHHH
Confidence            444 556655 4444211        123456665554 589999985544     579994  7778899999999999


Q ss_pred             HHHhh
Q 011777          472 YSMSK  476 (477)
Q Consensus       472 ~~l~~  476 (477)
                      +.+..
T Consensus       387 ~~~~~  391 (393)
T COG0436         387 RFLAE  391 (393)
T ss_pred             HHHHh
Confidence            98864

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.97  E-value=2.8e-28  Score=248.77  Aligned_cols=333  Identities=19%  Similarity=0.230  Sum_probs=228.9

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccc----ccc-CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT----TIY-LHHAIADFAEALASKMPGNLKVVYFVNSGTEAN  168 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~----~~~-~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~  168 (477)
                      +|+++++|.++.+ ++|| +||+|++++.++++++.+..    ..+ ..+...+|+++|+++++.  +..++++||++||
T Consensus        44 ~~~~~~~~~sn~y-l~l~-~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~--~~~i~~~sG~~a~  119 (410)
T PRK13392         44 GPRRVTIWCSNDY-LGMG-QHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGK--ESALLFTSGYVSN  119 (410)
T ss_pred             CCceEEEEECCCc-cCCC-CCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCC--CCEEEECcHHHHH
Confidence            5789999988654 3454 58999999999998754321    112 234678999999999974  4567778899999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      +.+++......++ .+|+.+..+|+.........+..          +..+  +      .+ |    .+++++.++...
T Consensus       120 ~~~i~~l~~~~~g-~~vi~~~~~h~s~~~~~~~~g~~----------~~~~--~------~~-d----~~~l~~~l~~~~  175 (410)
T PRK13392        120 DAALSTLGKLLPG-CVILSDALNHASMIEGIRRSGAE----------KQVF--R------HN-D----LADLEEQLASVD  175 (410)
T ss_pred             HHHHHHHhcCCCC-CEEEEehhhhHHHHHHHHHcCCe----------EEEE--e------CC-C----HHHHHHHHHhcc
Confidence            9999844221223 45566666887654433332211          1111  1      11 1    245666665333


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-Cc-cCCCCCCccccccCC--Cccee--eeccc
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GF-GRTGSHYWGFETQGV--IPDIV--TMAKG  322 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gf-gr~G~~~~~~~~~gv--~pDiv--t~sK~  322 (477)
                      .+++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ |+ |..| ..+ .++.++  .+|++  +|||+
T Consensus       176 ~~~t~~v~i~~~~n~tG~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g-~g~-~~~~~~~~~~div~~tlsK~  249 (410)
T PRK13392        176 PDRPKLIAFESVYSMDGDIAP----IEAICDLADRYNALTYVDEVHAVGLYGARG-GGI-AERDGLMDRIDMIQGTLAKA  249 (410)
T ss_pred             CCCCEEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEECCccccCcCCCC-Cch-hhhccCCCCCcEEEEEChHh
Confidence            356789999999999998877    9999999999999999999998 43 5555 222 233343  45766  89999


Q ss_pred             ccC-ccceEEEEeCHHHHHhhccccc--ccCCCCcHHHHHHHHHHHHhhchh-hHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 011777          323 IGN-GLPLGAVVTTPEIANVMAQKIQ--FNTFGGNPVCSAGGLAVLRVIDKE-RRQAHCADVGSHLLGRLRTLQERHDII  398 (477)
Q Consensus       323 lg~-G~pig~v~~~~~~~~~~~~~~~--~~t~~~~~~~~aaa~a~l~~l~~~-~~~~~~~~~~~~l~~~L~~l~~~~~~~  398 (477)
                      +|. |   ||+++++++++.+.....  ..+.+.+|++++++.++|+.++.. ...+++.++.+++++.|+++  .... 
T Consensus       250 ~g~~G---G~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~-  323 (410)
T PRK13392        250 FGCLG---GYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNAN--GIPV-  323 (410)
T ss_pred             hhccc---chhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc--CCCC-
Confidence            984 5   888899999887765432  234556788899999999877543 34466677778888877764  2221 


Q ss_pred             eeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCC-----CCCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777          399 GDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGL-----HGNVFRIKPPMCFTKDDADFLVDALDY  472 (477)
Q Consensus       399 ~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~-----~~~~iRi~p~~~~t~e~i~~~l~~l~~  472 (477)
                        .++.+.++.+.+.        ......++.+.|+ ++||++.+...     ...++|++++..+|++|+++++++|++
T Consensus       324 --~~~~~~~~~i~~~--------~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~  393 (410)
T PRK13392        324 --MPSPSHIVPVMVG--------DPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVA  393 (410)
T ss_pred             --CCCCCCEEEEEeC--------CHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence              2345666655542        1123457888886 67999986421     236899999999999999999999999


Q ss_pred             HHhh
Q 011777          473 SMSK  476 (477)
Q Consensus       473 ~l~~  476 (477)
                      ++++
T Consensus       394 ~~~~  397 (410)
T PRK13392        394 IWDR  397 (410)
T ss_pred             HHHH
Confidence            8765

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.97  E-value=4e-27  Score=236.97  Aligned_cols=329  Identities=16%  Similarity=0.115  Sum_probs=233.6

Q ss_pred             CCCEEEeecCCcccccCCC-CCHHHHHHHHHHHhhcccccc-----ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGH-CHPDVLNAIFEQSKLLQHATT-----IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEA  167 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh-~~p~v~~Av~~~l~~~~~~~~-----~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA  167 (477)
                      .++++|||.++.+   ||. .||+|++++.+.++++.....     .+......+|.++|+++++  .+.+++++||..|
T Consensus       100 ~~r~~l~FsSndY---LGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g--~e~all~sSGy~A  174 (476)
T PLN02955        100 RFKKLLLFSGNDY---LGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKK--KEDCLVCPTGFAA  174 (476)
T ss_pred             CCceEEEeeccCc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHC--CCcEEEECChHHH
Confidence            4579999988765   664 599999999999998643221     2345678899999999994  4679999999999


Q ss_pred             HHHHHHHHHh-----------ccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHH
Q 011777          168 NELAMLMARL-----------STGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARY  236 (477)
Q Consensus       168 ~~~Al~~ar~-----------~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (477)
                      |..++.....           ..+++.+|+.+...|........+....        .+.....      .++++     
T Consensus       175 N~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~--------~~a~~~~------f~HND-----  235 (476)
T PLN02955        175 NMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQ--------GNVEVFV------YRHCD-----  235 (476)
T ss_pred             HHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhcccc--------CCceEEE------eCCCC-----
Confidence            9999975421           0245667888888898766555443110        0111111      12222     


Q ss_pred             HHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCc--cCCCCCCccccccCCCc
Q 011777          237 AQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGF--GRTGSHYWGFETQGVIP  314 (477)
Q Consensus       237 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gf--gr~G~~~~~~~~~gv~p  314 (477)
                      +++|+++++... ++.+.|++|++.++.|.+.|    |++|.++|++||++||+||+++.+  |.+|  ....+++++.+
T Consensus       236 ~~~Le~~L~~~~-~~~~~Vv~EgV~SmdGdiap----L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G--~G~~e~~g~~~  308 (476)
T PLN02955        236 MYHLNSLLSSCK-MKRKVVVTDSLFSMDGDFAP----MEELSQLRKKYGFLLVIDDAHGTFVCGENG--GGVAEEFNCEA  308 (476)
T ss_pred             HHHHHHHHHhCC-CCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCcEEEEcccccCceecCCC--CcHHHHhCCCC
Confidence            588988887443 35588999999999999888    999999999999999999999733  4444  22346777766


Q ss_pred             ce----eeecccccC-ccceEEEEeCHHHHHhhcccccccCC--CCcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHH
Q 011777          315 DI----VTMAKGIGN-GLPLGAVVTTPEIANVMAQKIQFNTF--GGNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLG  386 (477)
Q Consensus       315 Di----vt~sK~lg~-G~pig~v~~~~~~~~~~~~~~~~~t~--~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~  386 (477)
                      |+    .||||++|. |   |++++++++++.+........|  +.+|...++++++++++.. +...+++.++.+++++
T Consensus       309 di~ii~~TLsKA~G~~G---Gfi~gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~  385 (476)
T PLN02955        309 DVDLCVGTLSKAAGCHG---GFIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKA  385 (476)
T ss_pred             CCcEEEEeCccchhccC---ceeecHHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            65    589999983 4   7899999999888754333333  3446667778888988754 3455667777776665


Q ss_pred             HHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-----CCCCEEEEeCCCCCcHH
Q 011777          387 RLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-----LHGNVFRIKPPMCFTKD  461 (477)
Q Consensus       387 ~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~iRi~p~~~~t~e  461 (477)
                      .+     .++.      ...++.+.+.        +...+..+.+.|+++||++.+..     .....+||+.+..||++
T Consensus       386 ~~-----G~~~------~sPI~pI~ig--------~~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~e  446 (476)
T PLN02955        386 LS-----GVDI------SSPIISLVVG--------NQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTE  446 (476)
T ss_pred             hc-----CCCC------CCCEEEEEeC--------CHHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHH
Confidence            21     1111      2445555552        33456778999999999986541     12357999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 011777          462 DADFLVDALDYSMS  475 (477)
Q Consensus       462 ~i~~~l~~l~~~l~  475 (477)
                      ||+.+++.|.+++.
T Consensus       447 dId~lv~~L~~~~~  460 (476)
T PLN02955        447 DVKKLITALSSCLD  460 (476)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988764

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.96  E-value=1.7e-27  Score=234.39  Aligned_cols=329  Identities=19%  Similarity=0.256  Sum_probs=245.4

Q ss_pred             CCCCEEEeecCCcccccCCC-CCHHHHHHHHHHHhhccccc-----cccCChHHHHHHHHHHhhCCCCCCEEEEeCChHH
Q 011777           93 ENGRRYLDAFAGIVTVSCGH-CHPDVLNAIFEQSKLLQHAT-----TIYLHHAIADFAEALASKMPGNLKVVYFVNSGTE  166 (477)
Q Consensus        93 ~dG~~ylD~~~g~~~~~lGh-~~p~v~~Av~~~l~~~~~~~-----~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGse  166 (477)
                      .+|++++||+++.+   ||. .||++++++.+.+++.....     ..+.++...+|.++|+++++  .+..++.+||-.
T Consensus        36 ~~~~~~~nf~SNdY---LGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g--~e~al~f~SGy~  110 (388)
T COG0156          36 ADGRKVLNFCSNDY---LGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLG--AEAALLFSSGFV  110 (388)
T ss_pred             cCCceeEeeeccCc---ccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhC--CCcEEEEcccch
Confidence            45999999999886   676 59999999999999843211     13567889999999999995  478999999999


Q ss_pred             HHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777          167 ANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF  246 (477)
Q Consensus       167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~  246 (477)
                      ||..++...   .+++.+|+.+--.|.+......++......+.                  .+ |    +++||+.++.
T Consensus       111 AN~~~i~~l---~~~~dli~~D~lnHASiidG~rls~a~~~~f~------------------Hn-D----~~~Le~~l~~  164 (388)
T COG0156         111 ANLGLLSAL---LKKGDLIFSDELNHASIIDGIRLSRAEVRRFK------------------HN-D----LDHLEALLEE  164 (388)
T ss_pred             hHHHHHHHh---cCCCcEEEEechhhhhHHHHHHhCCCcEEEec------------------CC-C----HHHHHHHHHh
Confidence            999988744   35678888888889886666665543322211                  11 1    5889999875


Q ss_pred             cCCC--CeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc-ccccCCCcc---e--ee
Q 011777          247 GTSG--KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG-FETQGVIPD---I--VT  318 (477)
Q Consensus       247 ~~~~--~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~-~~~~gv~pD---i--vt  318 (477)
                      ....  +...|++|.+.++.|.+.|    |++|.++++|||++|++||+|+ +|-.|...-+ .+++|+.++   +  .|
T Consensus       165 ~~~~~~~~~~IvtegVfSMdGdiAp----L~~l~~L~~ky~a~L~VDEAHa-~Gv~G~~GrG~~e~~g~~~~~vdi~~gT  239 (388)
T COG0156         165 ARENGARRKLIVTEGVFSMDGDIAP----LPELVELAEKYGALLYVDEAHA-VGVLGPNGRGLAEHFGLEPEEVDIIVGT  239 (388)
T ss_pred             hhccCCCceEEEEeccccCCCCcCC----HHHHHHHHHHhCcEEEEEcccc-ccccCCCCccHHHHhCCCCccceEEEEE
Confidence            2211  4689999999999999999    9999999999999999999997 5544422222 367777643   3  37


Q ss_pred             ecccccC-ccceEEEEeCHHHHHhhcccccc--cCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHh
Q 011777          319 MAKGIGN-GLPLGAVVTTPEIANVMAQKIQF--NTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQER  394 (477)
Q Consensus       319 ~sK~lg~-G~pig~v~~~~~~~~~~~~~~~~--~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~  394 (477)
                      |||++|+ |   |++.++..+.+.+......  .+-+.+|..++++.++|+++++ .+..++++++..++++.++..   
T Consensus       240 lsKAlGs~G---g~v~g~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~~---  313 (388)
T COG0156         240 LGKALGSSG---GYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKAL---  313 (388)
T ss_pred             chhhhcccC---ceeeCcHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc---
Confidence            9999995 7   8999999999998875433  3445678888899999999875 467888888888888555443   


Q ss_pred             CCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-----CCCCEEEEeCCCCCcHHHHHHHHHH
Q 011777          395 HDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-----LHGNVFRIKPPMCFTKDDADFLVDA  469 (477)
Q Consensus       395 ~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~iRi~p~~~~t~e~i~~~l~~  469 (477)
                       +.. ..+....++.+.+.        +...+.++...|+++||++.+..     .....+|++++..+|++||+.+++.
T Consensus       314 -~~~-~~~s~s~I~pv~~g--------d~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~  383 (388)
T COG0156         314 -GLV-LLPSESPIIPVILG--------DEERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEA  383 (388)
T ss_pred             -CCc-cCCCCCCeeeeEeC--------CHHHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHH
Confidence             211 12233445555553        23457788899999999986431     1236899999999999999999999


Q ss_pred             HHHH
Q 011777          470 LDYS  473 (477)
Q Consensus       470 l~~~  473 (477)
                      |.++
T Consensus       384 l~~~  387 (388)
T COG0156         384 LSEV  387 (388)
T ss_pred             HHhh
Confidence            9875

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=6.1e-27  Score=235.62  Aligned_cols=326  Identities=17%  Similarity=0.155  Sum_probs=214.0

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhC------CCCCCEEEEeCChHHHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKM------PGNLKVVYFVNSGTEANEL  170 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~------~~~~~~v~~~~sGseA~~~  170 (477)
                      ..+|+..|..  +++ .+|.+++++.+.+.........|+.+...+|++.+++++      +.+.++|++|+|++|++..
T Consensus        27 ~~i~l~~~~~--~~~-~~~~~~~al~~~l~~~~~~~~~Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~  103 (368)
T PRK03317         27 VPVRLNTNEN--PYP-PSPALVADIAEAVAEAAAGLNRYPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQ  103 (368)
T ss_pred             ceeEecCCCC--CCC-CCHHHHHHHHHHHhhhhhhhccCCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHH
Confidence            3688776654  454 688999999988764221222344433455556666554      4456789999999999999


Q ss_pred             HHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCC
Q 011777          171 AMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG  250 (477)
Q Consensus       171 Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~  250 (477)
                      +++....  +++.|++..++|+++.......             +...++.+..  ..++.|    .++++++++.   .
T Consensus       104 ~~~~~~~--~gd~v~v~~P~y~~~~~~~~~~-------------g~~~~~~~~~--~~~~~d----~~~l~~~~~~---~  159 (368)
T PRK03317        104 LLQAFGG--PGRTALGFVPSYSMHPIIARGT-------------HTEWVEGPRA--ADFTLD----VDAAVAAIAE---H  159 (368)
T ss_pred             HHHHhcC--CCCEEEEeCCChHHHHHHHHhc-------------CCeeEEcccC--CCCCCC----HHHHHHHHhc---c
Confidence            9886543  5678999999998875543322             2222222211  112212    4677777752   2


Q ss_pred             CeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee---eeccccc-Cc
Q 011777          251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV---TMAKGIG-NG  326 (477)
Q Consensus       251 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G  326 (477)
                      ++++++++..+|++|.+.+    .+++.++|+.++++||+||+|++|++.| ........+..|+++   ||||++| .|
T Consensus       160 ~~~~i~l~~p~NPtG~~~~----~~~l~~l~~~~~~~lI~DE~y~~~~~~~-~~~~~~~~~~~~~~i~~~SfSK~~g~~G  234 (368)
T PRK03317        160 RPDVVFLTSPNNPTGTALP----LDDVEAILDAAPGIVVVDEAYAEFRRSG-TPSALTLLPEYPRLVVSRTMSKAFAFAG  234 (368)
T ss_pred             CCCEEEEeCCCCCCCCCCC----HHHHHHHHHHCCceEEEeCCchhhcccC-CcCHHHHHHhCCCEEEEEechhhhccch
Confidence            3444555555677786665    6666777777789999999999998766 333344444456766   8999998 69


Q ss_pred             cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccce
Q 011777          327 LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGL  406 (477)
Q Consensus       327 ~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~  406 (477)
                      +|+||+++++++++.+....  .+|+.++++++++.++|+..  +.+.++.++. ...++.+.+...+++. ....+.|.
T Consensus       235 lRiG~~~~~~~~~~~l~~~~--~~~~~s~~~~~a~~~~l~~~--~~~~~~~~~~-~~~~~~l~~~L~~~g~-~~~~~~~~  308 (368)
T PRK03317        235 GRLGYLAAAPAVVDALRLVR--LPYHLSAVTQAAARAALRHA--DELLASVAAL-RAERDRVVAWLRELGL-RVAPSDAN  308 (368)
T ss_pred             hhhhhhhCCHHHHHHHHhcC--CCCCCCHHHHHHHHHHhhCH--HHHHHHHHHH-HHHHHHHHHHHHHCCC-EeCCCCCc
Confidence            99999999999999887543  46788999999999998743  2333333222 2223333333333442 22344555


Q ss_pred             eEEE-EEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          407 MVGM-ELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       407 ~~~i-~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      ++.+ .+        +   ....+.+.|+++||++.+.+ ..+++||+.   .+++++++++++|+++++
T Consensus       309 ~~~~~~~--------~---~~~~~~~~l~~~Gv~v~~~~-~~~~iRi~~---~~~~~~~~~~~~l~~~~~  363 (368)
T PRK03317        309 FVLFGRF--------A---DRHAVWQGLLDRGVLIRDVG-IPGWLRVTI---GTPEENDAFLAALAEVLA  363 (368)
T ss_pred             EEEEecc--------C---CHHHHHHHHHHCCEEEEeCC-CCCeEEEec---CCHHHHHHHHHHHHHHHH
Confidence            5443 22        1   13568889999999998764 357999964   378899999999998875

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.96  E-value=3.5e-26  Score=231.10  Aligned_cols=338  Identities=14%  Similarity=0.154  Sum_probs=224.7

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCC-hHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH-HAIADFAEALASKMPGNLKVVYFVNSGTEANELAML  173 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~-~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~  173 (477)
                      +..+||+..+.  +.++ .+|++.+++.+.+....  ...|.. ....++++.++++++.+.++|++++|+++|+..+++
T Consensus        27 ~~~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~--~~~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~  101 (380)
T PRK06225         27 DKEMIWMGQNT--NHLG-PHEEVREAMIRCIEEGE--YCKYPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVMR  101 (380)
T ss_pred             cCCeEEccCCC--CCCC-CCHHHHHHHHHHHhcCC--CCCCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHH
Confidence            34578877654  3454 68999999999886532  122333 346789999999988777889999999999999998


Q ss_pred             HHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCC-cCCCCCCCHHHHHHHHHHHHhccCCCCe
Q 011777          174 MARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDP-YHGSFGSDAARYAQDLQDHIDFGTSGKV  252 (477)
Q Consensus       174 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~le~~i~~~~~~~~  252 (477)
                      ...  .+++.|++.+++|+.........             |...+.++.. ....+..|    .+++++.+.    +++
T Consensus       102 ~~~--~~gd~vl~~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~~d----~~~l~~~~~----~~~  158 (380)
T PRK06225        102 AFL--SPGDNAVTPDPGYLIIDNFASRF-------------GAEVIEVPIYSEECNYKLT----PELVKENMD----ENT  158 (380)
T ss_pred             Hhc--CCCCEEEEcCCCCcchHHHHHHh-------------CceEEeeccccccCCccCC----HHHHHhhcC----CCc
Confidence            653  24567999999987543222111             2222222210 01111112    366776664    345


Q ss_pred             eEEE-ecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccc-cCCCcceeeeccccc-Cccce
Q 011777          253 AGFI-AETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET-QGVIPDIVTMAKGIG-NGLPL  329 (477)
Q Consensus       253 a~vi-~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~-~gv~pDivt~sK~lg-~G~pi  329 (477)
                      ++++ ++| ++++|. .++.+.+++|.++|++||+++|+||+|.+|.. + ....... .+...++.+|||.+| .|+|+
T Consensus       159 ~~v~l~~p-~NptG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~-~~~~~~~~~~~~i~~~s~SK~~g~~G~Ri  234 (380)
T PRK06225        159 RLIYLIDP-LNPLGS-SYTEEEIKEFAEIARDNDAFLLHDCTYRDFAR-E-HTLAAEYAPEHTVTSYSFSKIFGMAGLRI  234 (380)
T ss_pred             eEEEEeCC-CCCCCc-CCCHHHHHHHHHHHHHCCcEEEEehhHHHHhc-c-CCchhhcCCCCEEEEeechhhcCCcccee
Confidence            5554 555 556664 55788899999999999999999999987743 2 1111111 123345668999998 69999


Q ss_pred             EEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCC--ceeeecccee
Q 011777          330 GAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDI--IGDVRGRGLM  407 (477)
Q Consensus       330 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~--~~~v~g~g~~  407 (477)
                      ||+++++++++.+.... .++++.|.+++.++.++++.  .+++.+++++..+..++.+.+..++.+.  +...+..|.+
T Consensus       235 G~i~~~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~  311 (380)
T PRK06225        235 GAVVATPDLIEVVKSIV-INDLGTNVIAQEAAIAGLKV--KDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNM  311 (380)
T ss_pred             EEEecCHHHHHHHHHHH-hcccCCCHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeE
Confidence            99999999998876532 35678889999888888764  2345555555555545555544444322  2223456788


Q ss_pred             EEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-----CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          408 VGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-----HGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       408 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +++++....       ....++.+.|.++||.+.++..     ..+++|++.  ..+++++++++++|.+++++
T Consensus       312 ~~~~~~~~~-------~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~--~~~~e~l~~~~~~l~~~~~~  376 (380)
T PRK06225        312 MVIDISEAG-------IDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVSF--SIPREQVEVFCEEFPDVVET  376 (380)
T ss_pred             EEEEccccc-------CCHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEEe--CCCHHHHHHHHHHHHHHHHH
Confidence            888874211       1245688888899999988621     235899974  46899999999999998864

>PRK07682 hypothetical protein; Validated

Probab=99.95  E-value=2.5e-26  Score=232.05  Aligned_cols=338  Identities=13%  Similarity=0.098  Sum_probs=217.7

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhCC--CCCC-EEEEeCChHHHHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKMP--GNLK-VVYFVNSGTEANELA  171 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~~--~~~~-~v~~~~sGseA~~~A  171 (477)
                      ..|+|..|...  ++ .++.+.+++.+.++...  +....+..+.+.++++++.+.++  .+.+ +|++|+|+++|+..+
T Consensus        21 ~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~   97 (378)
T PRK07682         21 GVISLGVGEPD--FV-TPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVA   97 (378)
T ss_pred             CeEEeCCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHH
Confidence            36777776653  44 46678888888776421  22223344566677777766533  2333 799999999999999


Q ss_pred             HHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCC
Q 011777          172 MLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGK  251 (477)
Q Consensus       172 l~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~  251 (477)
                      ++...  .+++.|++.+++|+++.......+.             ..+.++......+..|    .+++++++.    ++
T Consensus        98 ~~~l~--~~gd~vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~d----~~~l~~~~~----~~  154 (378)
T PRK07682         98 MRAII--NPGDEVLIVEPSFVSYAPLVTLAGG-------------VPVPVATTLENEFKVQ----PAQIEAAIT----AK  154 (378)
T ss_pred             HHHhC--CCCCEEEEeCCCchhhHHHHHHcCC-------------EEEEeecCCccCCCCC----HHHHHhhcC----cc
Confidence            88653  3668899999999876443322221             1122221111111112    467777664    24


Q ss_pred             eeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cccCC---Ccceeeeccccc-Cc
Q 011777          252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQGV---IPDIVTMAKGIG-NG  326 (477)
Q Consensus       252 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~gv---~pDivt~sK~lg-~G  326 (477)
                      ++++++...+|++|. .++++.+++|.++|++||+++|+||+|.+|.+.+ .+.++ ...+.   ...+.+|||.++ .|
T Consensus       155 ~~~v~~~~p~NPtG~-~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~~i~~~S~SK~~~~~G  232 (378)
T PRK07682        155 TKAILLCSPNNPTGA-VLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDE-AYTSFASIKGMRERTILISGFSKGFAMTG  232 (378)
T ss_pred             cEEEEEECCCCCcCc-CcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCC-CCCChhhcccccCCEEEEecCcccccChh
Confidence            555544444666774 6688899999999999999999999999987665 32222 11222   223447999999 69


Q ss_pred             cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc
Q 011777          327 LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGR  404 (477)
Q Consensus       327 ~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~  404 (477)
                      +|+||+++++++++.+.......+++.+++++.++.++|+..+.  ++..+.++++.+.+.+.|++    ++. ....+.
T Consensus       233 lR~G~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~----~~~-~~~~p~  307 (378)
T PRK07682        233 WRLGFIAAPVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNE----IGL-TCHVPG  307 (378)
T ss_pred             hhhhhhhcCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH----CCC-ccCCCC
Confidence            99999999999999887654445567889999999888864221  22334444555555555544    332 222333


Q ss_pred             -ceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          405 -GLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       405 -g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                       |+++|+.+....       ....++.+.++ ++||.+.++..+    .+++||+..  .+++++++++++|.+++++
T Consensus       308 g~~~~~~~~~~~~-------~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~--~~~~~l~~~l~~l~~~l~~  376 (378)
T PRK07682        308 GAFYAFPSISSTG-------LSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYA--TSLEQLQEAMKRMKRFVEN  376 (378)
T ss_pred             eeEEEEEeccCCC-------CCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeC--CCHHHHHHHHHHHHHHHhh
Confidence             455566553210       12346777765 689999987432    478999755  5789999999999998865

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.95  E-value=9.3e-26  Score=229.52  Aligned_cols=344  Identities=13%  Similarity=0.062  Sum_probs=220.3

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhc---cccccccCChHHHHHHHHHHhhCC--CCC-CEEEEeCChHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL---QHATTIYLHHAIADFAEALASKMP--GNL-KVVYFVNSGTEAN  168 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~---~~~~~~~~~~~~~~l~~~La~~~~--~~~-~~v~~~~sGseA~  168 (477)
                      ++..+||..|... .++ .+|.+.+++.+.+...   .|....+..+.+..+++++++..+  .+. ++|++|+|+++|+
T Consensus        38 ~~~~i~l~~g~~~-~~~-p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al  115 (405)
T PRK06207         38 PGRPVDFSHGDVD-AHE-PTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGAL  115 (405)
T ss_pred             CCCceecCCcCCC-CCC-CCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHH
Confidence            4456677766543 333 5678999988877642   122223344567788888887755  344 7899999999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCc---CCCCCCCHHHHHHHHHHHHh
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPY---HGSFGSDAARYAQDLQDHID  245 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~le~~i~  245 (477)
                      ..+++...  .+++.|++.+++|++........+             ...++++..+   ...++.|    .++|+++++
T Consensus       116 ~~~~~~l~--~~Gd~Vlv~~P~y~~~~~~~~~~g-------------~~v~~v~~~~~~~~~~~~~d----~~~l~~~~~  176 (405)
T PRK06207        116 FLAVAATV--ARGDKVAIVQPDYFANRKLVEFFE-------------GEMVPVQLDYLSADKRAGLD----LDQLEEAFK  176 (405)
T ss_pred             HHHHHHhc--CCCCEEEEeCCCchhHHHHHHHcC-------------CEEEEEeccccCcccCCCcC----HHHHHHhhh
Confidence            99888653  366889999999988654433322             1222221110   0111112    467777765


Q ss_pred             ccCCCCee-EEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCC----Ccceeeec
Q 011777          246 FGTSGKVA-GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV----IPDIVTMA  320 (477)
Q Consensus       246 ~~~~~~~a-~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv----~pDivt~s  320 (477)
                          .+++ .+++.| +|++| .+.+.+.+++|.++|++||++||+||+|..|.+.|..+-.+.....    ..-+-+||
T Consensus       177 ----~~~k~v~l~~P-~NPTG-~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfS  250 (405)
T PRK06207        177 ----AGVRVFLFSNP-NNPAG-VVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPS  250 (405)
T ss_pred             ----hcCeEEEECCC-CCCCC-cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecch
Confidence                2344 455556 56666 5568888999999999999999999999988665522111111111    22233689


Q ss_pred             cccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCce
Q 011777          321 KGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIG  399 (477)
Q Consensus       321 K~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~  399 (477)
                      |.++ .|+|+||+++++++++.+........++.+.+.+.++.++|+.-  +.+.++..+.....++.+.+...+++.+.
T Consensus       251 K~~~lpGlRiG~ii~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~  328 (405)
T PRK06207        251 KTESLSGYRLGVAFGSPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEP--DGWMKDRIARHQAIRDDLLRVLRGVEGVF  328 (405)
T ss_pred             hhccCcccceEEEEcCHHHHHHHHHHHhHhccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence            9999 79999999999999988876544455566778888888877531  12222222222223333433333343233


Q ss_pred             eeec-cceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          400 DVRG-RGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       400 ~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      ...+ .|+++|+++....       ....++.+.|+ ++||.+.|+..+    .+++||+..  .+++++++++++|.++
T Consensus       329 ~~~p~gg~fl~~~l~~~~-------~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~--~~~~~l~~al~rl~~~  399 (405)
T PRK06207        329 VRAPQAGSYLFPRLPRLA-------VSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFS--QDHAAAVAAAERIAQL  399 (405)
T ss_pred             ecCCCeeEEEEEeCcccC-------CCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEec--CCHHHHHHHHHHHHHH
Confidence            3333 4778888873210       12356777786 689999998543    478999765  4789999999999998


Q ss_pred             Hhh
Q 011777          474 MSK  476 (477)
Q Consensus       474 l~~  476 (477)
                      +++
T Consensus       400 l~~  402 (405)
T PRK06207        400 IER  402 (405)
T ss_pred             HHH
Confidence            864

>PLN00175 aminotransferase family protein; Provisional

Probab=99.95  E-value=9e-26  Score=229.95  Aligned_cols=340  Identities=14%  Similarity=0.077  Sum_probs=220.0

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhc--cccccccCChHHHHHHHHHHhhCC--CCCC-EEEEeCChHHHHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL--QHATTIYLHHAIADFAEALASKMP--GNLK-VVYFVNSGTEANELA  171 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~--~~~~~~~~~~~~~~l~~~La~~~~--~~~~-~v~~~~sGseA~~~A  171 (477)
                      ..+||..|.+.  +. .++.+.+++.+.++..  .|....+..+.+..+++.+.+..+  .+.+ +|++|+|+++|+..+
T Consensus        55 ~~i~l~~G~P~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~  131 (413)
T PLN00175         55 GAINLGQGFPN--FD-GPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAAT  131 (413)
T ss_pred             CeEecCCCCCC--CC-CCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHH
Confidence            57898888763  22 4788999998887752  122222334556666666665543  2344 699999999999998


Q ss_pred             HHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCC
Q 011777          172 MLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGK  251 (477)
Q Consensus       172 l~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~  251 (477)
                      +....  .+++.|++.+++|..+.......+             ...+.++.... .+..+    .++|++.+.    .+
T Consensus       132 ~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~g-------------~~~~~v~~~~~-~~~~~----~~~l~~~~~----~~  187 (413)
T PLN00175        132 ILGLI--NPGDEVILFAPFYDSYEATLSMAG-------------AKIKTVTLRPP-DFAVP----EDELKAAFT----SK  187 (413)
T ss_pred             HHHhC--CCCCEEEEeCCCchhHHHHHHHcC-------------CEEEEEECCcc-cCCCC----HHHHHHhcC----cC
Confidence            87543  467889999999987644333221             22222211100 12212    467777765    34


Q ss_pred             eeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cccCC---Ccceeeeccccc-Cc
Q 011777          252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQGV---IPDIVTMAKGIG-NG  326 (477)
Q Consensus       252 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~gv---~pDivt~sK~lg-~G  326 (477)
                      +++|++.+.+|++| .+.+++.+++|.++|++||+++|+||+|..|.+.+ ....+ +..+.   ..-+-+|||.++ .|
T Consensus       188 ~k~i~i~~p~NPtG-~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~-~~~s~~~~~~~~~~vi~i~SfSK~~~~~G  265 (413)
T PLN00175        188 TRAILINTPHNPTG-KMFTREELELIASLCKENDVLAFTDEVYDKLAFEG-DHISMASLPGMYERTVTMNSLGKTFSLTG  265 (413)
T ss_pred             ceEEEecCCCCCCC-cCCCHHHHHHHHHHHHHcCcEEEEecccCccccCC-cccChhhCCCCcCcEEEEecchhhccCcc
Confidence            66777766677777 45689999999999999999999999999886544 22222 22222   223347999999 69


Q ss_pred             cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc-c
Q 011777          327 LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGR-G  405 (477)
Q Consensus       327 ~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-g  405 (477)
                      +|+||+++++++++.+.......+++.+.+.+.++.++|+..  +.+.++.++..+..++.+.+..++++. ....+. |
T Consensus       266 ~RiG~~v~~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~p~g~  342 (413)
T PLN00175        266 WKIGWAIAPPHLTWGVRQAHSFLTFATATPMQWAAVAALRAP--ESYYEELKRDYSAKKDILVEGLKEVGF-KVYPSSGT  342 (413)
T ss_pred             hheeeeEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHCCC-eecCCCee
Confidence            999999999999988876555567888999999998888642  233333333333333333333333442 223344 4


Q ss_pred             eeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC-------CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          406 LMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH-------GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       406 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~-------~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .++|+.+....   ..   ...++.+.|+ ++||.+.|+..+       .+++||+..  .+++++++++++|.+++++
T Consensus       343 ~f~~~~~~~~~---~~---~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~--~~~e~l~~~~~rL~~~~~~  413 (413)
T PLN00175        343 YFVMVDHTPFG---FE---NDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFC--KDEETLRAAVERMKTKLKR  413 (413)
T ss_pred             EEEEEeccccC---CC---CHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEc--CCHHHHHHHHHHHHHHHhC
Confidence            55677652110   00   1346777775 569999987432       368999764  5899999999999998763

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.95  E-value=1.2e-25  Score=227.46  Aligned_cols=338  Identities=15%  Similarity=0.113  Sum_probs=220.4

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHHHHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEANELAM  172 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA~~~Al  172 (477)
                      ..+||..|.+.  ++ .++.+.+++.+.+....  +....+..+.+..+++.+.+.++  .+.++|++++|+++|+..++
T Consensus        25 ~~i~l~~g~~~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~  101 (382)
T PRK06108         25 GVLPLWFGESD--LP-TPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAA  101 (382)
T ss_pred             CeEEecCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHH
Confidence            46888877753  33 37899999988876532  22223345667777777776655  55679999999999999998


Q ss_pred             HHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcC-CCCCCCHHHHHHHHHHHHhccCCCC
Q 011777          173 LMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYH-GSFGSDAARYAQDLQDHIDFGTSGK  251 (477)
Q Consensus       173 ~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~~  251 (477)
                      +....  +++.|++.+++|..........             |...+.+|.... ..+..|    .+++++.++    .+
T Consensus       102 ~~l~~--~gd~vl~~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~~d----~~~l~~~~~----~~  158 (382)
T PRK06108        102 QALVG--PGDEVVAVTPLWPNLVAAPKIL-------------GARVVCVPLDFGGGGWTLD----LDRLLAAIT----PR  158 (382)
T ss_pred             HHhcC--CCCEEEEeCCCccchHHHHHHC-------------CCEEEEeeCCCCCCCccCC----HHHHHHhcC----cc
Confidence            86533  5678999999987654332221             222222222110 111111    467777664    24


Q ss_pred             eeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCC-CCCCcc-ccccCCCcc---eeeeccccc-C
Q 011777          252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRT-GSHYWG-FETQGVIPD---IVTMAKGIG-N  325 (477)
Q Consensus       252 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~-G~~~~~-~~~~gv~pD---ivt~sK~lg-~  325 (477)
                      +++++++..+|++|. ..+.+.+++|.++|++||+++|+||+|.+|.+. +..... .+..+....   +.+|||.++ .
T Consensus       159 ~~~i~l~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~  237 (382)
T PRK06108        159 TRALFINSPNNPTGW-TASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMT  237 (382)
T ss_pred             ceEEEEECCCCCCCc-ccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCc
Confidence            556666555677774 468899999999999999999999999988654 211111 111111122   337999998 5


Q ss_pred             ccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeec
Q 011777          326 GLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRG  403 (477)
Q Consensus       326 G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g  403 (477)
                      |+|+||+++++++++.+.......+++.+++.+.++.++|+...+  ++..++++++.+++.+.|++    .+.+....+
T Consensus       238 G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~p  313 (382)
T PRK06108        238 GWRLGWLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRA----LPGVEVAKP  313 (382)
T ss_pred             ccceeeeeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh----CCCCcccCC
Confidence            999999999999988876554445667789999999888864311  23344444455555554443    332333334


Q ss_pred             c-ceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          404 R-GLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       404 ~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      . |+++++.+...        ....++.+.|+ ++||.+.++..+    .+++||++..  +++++++++++|.++++
T Consensus       314 ~~g~~~~~~l~~~--------~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~  381 (382)
T PRK06108        314 DGAMYAFFRIPGV--------TDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR--DPARLDEAVERLRRFLA  381 (382)
T ss_pred             CeeEEEEEeCCCC--------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence            4 55667766321        12346777764 579999887432    4789998776  89999999999999875

>PRK07324 transaminase; Validated

Probab=99.95  E-value=3.6e-26  Score=230.08  Aligned_cols=343  Identities=14%  Similarity=0.102  Sum_probs=222.9

Q ss_pred             EeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCC-CCCCEEEEeCChHHHHH
Q 011777           91 FDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMP-GNLKVVYFVNSGTEANE  169 (477)
Q Consensus        91 ~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~-~~~~~v~~~~sGseA~~  169 (477)
                      ++..|..++++..|-..  +. .++.+ +++.+++........  ......+|++.+++++. .+.++|++|+|+++|+.
T Consensus        21 ~~~~~~~~~~~~~~e~~--~~-~~~~~-~~~~~~~~~~~~~Y~--~~~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~   94 (373)
T PRK07324         21 YDIAESCIDSLTLEELL--AL-AGKNP-EAFYQELGQKKLTYG--WIEGSPEFKEAVASLYQNVKPENILQTNGATGANF   94 (373)
T ss_pred             cccccCCCCCCcHHHHH--hc-cCcch-HHHHHHHhcCCccCC--CCCCCHHHHHHHHHHhcCCChhhEEEcCChHHHHH
Confidence            34555556666554432  11 35566 788777765322111  12234567777777653 35678999999999999


Q ss_pred             HHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCC
Q 011777          170 LAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS  249 (477)
Q Consensus       170 ~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~  249 (477)
                      .++....  .+++.|++..++|..........             |...+.+|......+..|    .+++++++.    
T Consensus        95 ~~~~~l~--~~gd~Vl~~~P~y~~~~~~~~~~-------------g~~v~~v~~~~~~~~~~d----~~~l~~~~~----  151 (373)
T PRK07324         95 LVLYALV--EPGDHVISVYPTYQQLYDIPESL-------------GAEVDYWQLKEENGWLPD----LDELRRLVR----  151 (373)
T ss_pred             HHHHHhC--CCCCEEEEcCCCchhHHHHHHHc-------------CCEEEEEecccccCCCCC----HHHHHHhCC----
Confidence            9988653  35678999999987664332222             222222222111112111    466766654    


Q ss_pred             CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cccCCCcceeeeccccc-Ccc
Q 011777          250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQGVIPDIVTMAKGIG-NGL  327 (477)
Q Consensus       250 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~gv~pDivt~sK~lg-~G~  327 (477)
                      .++++|++...+|++| .+.+++.+++|.++|++||+++|+||+|.++...+ ....+ +..+....+-+|||.++ .|+
T Consensus       152 ~~~kli~i~~p~NPtG-~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~-~~~s~~~~~~~~I~~~s~SK~~~~~G~  229 (373)
T PRK07324        152 PNTKLICINNANNPTG-ALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDG-STPSIADLYEKGISTNSMSKTYSLPGI  229 (373)
T ss_pred             CCCcEEEEeCCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEccccccccCC-CCCChhhccCCEEEEecchhhcCCccc
Confidence            3556777766667777 45688899999999999999999999999887654 22221 22222223447999999 699


Q ss_pred             ceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccc-e
Q 011777          328 PLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG-L  406 (477)
Q Consensus       328 pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g-~  406 (477)
                      |+||+++++++++.+.......+++.+.+++.++..+|+.  .+.+.++.++..+..++.+.+..++++.+..+.+.| .
T Consensus       230 RiG~i~~~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~--~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~  307 (373)
T PRK07324        230 RVGWIAANEEVIDILRKYRDYTMICAGVFDDMLASLALEH--RDAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVS  307 (373)
T ss_pred             eeEEEecCHHHHHHHHHHhCcEEecCChHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCCceE
Confidence            9999999999999888766666788888999888887752  244555555554444555555554555454555555 4


Q ss_pred             eEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC--CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          407 MVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH--GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       407 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +.++.+...        ....++.+.|+ ++||.+.|+..+  .+++||+.  ..+++.+++++++|.+++++
T Consensus       308 ~~~i~~~~~--------~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~--~~~~~~l~~~l~rl~~~l~~  370 (373)
T PRK07324        308 TSFVKLDVD--------MPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGY--CCDTETLKKGLKKLSEFLRE  370 (373)
T ss_pred             EEEEEeCCC--------CCHHHHHHHHHHhcCEEEECccccCCCCeEEEEe--cCCHHHHHHHHHHHHHHHHh
Confidence            445555221        12345677664 679999998644  37899964  56799999999999998864

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=5.1e-26  Score=228.20  Aligned_cols=323  Identities=14%  Similarity=0.103  Sum_probs=216.2

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR  176 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar  176 (477)
                      .++||.++..  ++| .+|.+.+++.++++...+    |+.....++++.+++++..+.++|++|+|+++++..+++...
T Consensus        30 ~~i~l~~n~~--~~~-~~~~v~~a~~~~~~~~~~----~p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~  102 (359)
T PRK03158         30 KIVKLASNEN--PYG-PSPKVKEAIAAHLDELAL----YPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALL  102 (359)
T ss_pred             ceEEecCCCC--CCC-CCHHHHHHHHHHHHHhhc----CCCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHh
Confidence            6789888765  466 488999999988765332    334456778888888887667889999999999998877543


Q ss_pred             hccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEE
Q 011777          177 LSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFI  256 (477)
Q Consensus       177 ~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi  256 (477)
                        .+++.|++.+++|+++.......             |.....+|.. .  +..|    ++++++.++    +++++++
T Consensus       103 --~~gd~v~~~~p~y~~~~~~~~~~-------------g~~~~~~~~~-~--~~~d----~~~l~~~~~----~~~~~v~  156 (359)
T PRK03158        103 --NPGTNTVMAEPTFSQYRHNAIIE-------------GAEVREVPLK-D--GGHD----LEAMLKAID----EQTKIVW  156 (359)
T ss_pred             --CCCCEEEEcCCCHHHHHHHHHHc-------------CCeEEEEecC-C--CCcC----HHHHHHhcC----CCCCEEE
Confidence              35678999999999864433222             1122222211 1  1111    456666554    3455666


Q ss_pred             ecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc---cccCCCcceeeeccccc-CccceEEE
Q 011777          257 AETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF---ETQGVIPDIVTMAKGIG-NGLPLGAV  332 (477)
Q Consensus       257 ~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~---~~~gv~pDivt~sK~lg-~G~pig~v  332 (477)
                      ++..+|++|.+. +.+.+.++.+.|+ +|+++|+||+|..|...+......   +..+...-+.+|||.+| .|+|+||+
T Consensus       157 i~~p~NPtG~~~-~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~  234 (359)
T PRK03158        157 ICNPNNPTGTYV-NHEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYG  234 (359)
T ss_pred             EeCCCCCCCCCC-CHHHHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehh
Confidence            555577788655 4455555555543 699999999998875433111111   12222222347999999 69999999


Q ss_pred             EeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEE
Q 011777          333 VTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMEL  412 (477)
Q Consensus       333 ~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~  412 (477)
                      ++++++++.+....  .+++.|++++.++.++|+   +.++.+++++..+..++.+.+...+++ +...++.|.++++.+
T Consensus       235 v~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~g~~i~~~~  308 (359)
T PRK03158        235 IASEELIEKLNIAR--PPFNTTRIAQYAAIAALE---DQAFLKECVEKNAEGLEQYYAFCKEYG-LFYYPSQTNFIFVDT  308 (359)
T ss_pred             cCCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCC-CeeCCCcCcEEEEEC
Confidence            99999998886543  357889999999998885   334455555544555555555444554 333556788888876


Q ss_pred             eeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC--CCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          413 VTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH--GNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      ..          ...++.+.|+++||.+.++..+  .+++||+..   +++++++++++|+++
T Consensus       309 ~~----------~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~---~~~~~~~l~~al~~~  358 (359)
T PRK03158        309 GR----------DANELFEALLKKGYIVRSGAALGFPTGVRITIG---LKEQNDKIIELLKEL  358 (359)
T ss_pred             CC----------CHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC---CHHHHHHHHHHHHHh
Confidence            21          1356888888999999997433  478999643   899999999999875

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.95  E-value=1e-25  Score=226.80  Aligned_cols=331  Identities=17%  Similarity=0.176  Sum_probs=220.4

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAML  173 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~  173 (477)
                      +++.++||.++..  .+| .+|.+.+++.+.+....    .|......++++.++++++.+.++|++++|+++++..+++
T Consensus        30 ~~~~~i~l~~~~~--~~~-~~~~~~~a~~~~~~~~~----~y~~~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~  102 (367)
T PRK02731         30 GIADIIKLASNEN--PLG-PSPKAIEAIRAAADELH----RYPDGSGFELKAALAEKFGVDPERIILGNGSDEILELLAR  102 (367)
T ss_pred             CCCceEEecCCCC--CCC-CCHHHHHHHHHHHHhhc----CCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHH
Confidence            6778999988763  466 57889999988776432    3443445688899999887766789999999999988776


Q ss_pred             HHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCee
Q 011777          174 MARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA  253 (477)
Q Consensus       174 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a  253 (477)
                      ...  .+++.|++.+++|.++.......             |.....+|..   .+..|    ++++++.++    ++++
T Consensus       103 ~l~--~~gd~vl~~~p~y~~~~~~~~~~-------------g~~~~~~~~~---~~~~~----~~~l~~~~~----~~~~  156 (367)
T PRK02731        103 AYL--GPGDEVIYSEHGFAVYPIAAQAV-------------GAKPVEVPAK---DYGHD----LDAMLAAVT----PRTR  156 (367)
T ss_pred             Hhc--CCCCEEEEecCCHHHHHHHHHHc-------------CCeEEEeccc---CCCCC----HHHHHHHhC----CCCc
Confidence            542  35678999999887654332221             2222222210   11111    467777665    3456


Q ss_pred             EEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee---eeccccc-Cccce
Q 011777          254 GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV---TMAKGIG-NGLPL  329 (477)
Q Consensus       254 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pi  329 (477)
                      +|+++..++++|.+. +.+.++++.+.|+ +|+++|+||+|..+.+.+....++...+..++++   +|||.+| .|+|+
T Consensus       157 ~v~l~~p~nptG~~~-~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~Ri  234 (367)
T PRK02731        157 LVFIANPNNPTGTYL-PAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRV  234 (367)
T ss_pred             EEEEeCCCCCCCcCC-CHHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccce
Confidence            666666677778555 4444555554443 5999999999987765441122223333334444   7999998 69999


Q ss_pred             EEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEE
Q 011777          330 GAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVG  409 (477)
Q Consensus       330 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~  409 (477)
                      ||+++++++++.+....  .+++.+.+++.++.+.|+   .+++.++.++..+..++.+.+...+++.. ..++.|.+++
T Consensus       235 G~l~~~~~~~~~l~~~~--~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~~g~~-~~~~~g~~~~  308 (367)
T PRK02731        235 GYGIAPPEIIDALNRVR--QPFNVNSLALAAAVAALD---DDAFVEKSRALNAEGMAWLTEFLAELGLE-YIPSVGNFIL  308 (367)
T ss_pred             eeeeCCHHHHHHHHHcc--CCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHCCCc-cCCCCceEEE
Confidence            99999999998887543  356778888888888775   33444555555455555555544444432 2345688888


Q ss_pred             EEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC--CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          410 MELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH--GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       410 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +.+...        ....++.+.|.++||.+.++..+  .+++|+++.   +.++++++++.|+++++.
T Consensus       309 i~~~~~--------~~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~~---~~~e~~~l~~aL~~~~~~  366 (367)
T PRK02731        309 VDFDDG--------KDAAEAYQALLKRGVIVRPVAGYGLPNALRITIG---TEEENRRFLAALKEFLAA  366 (367)
T ss_pred             EECCCC--------CCHHHHHHHHHHCCEEEEeCCCCCCCCeEEEecC---CHHHHHHHHHHHHHHHhc
Confidence            887211        12457888999999999987544  378999754   789999999999998753

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.95  E-value=1.8e-25  Score=227.31  Aligned_cols=339  Identities=14%  Similarity=0.054  Sum_probs=216.8

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-ccc-cccCChHHHHHHHHHHhhCC--CCC-CEEEEeCChHHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-HAT-TIYLHHAIADFAEALASKMP--GNL-KVVYFVNSGTEANE  169 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-~~~-~~~~~~~~~~l~~~La~~~~--~~~-~~v~~~~sGseA~~  169 (477)
                      |..++||..|...  ++ .++.+.+++.+.+.... +.. ..+..+.++.+++.+.+..+  .+. ++|++|+|+++|+.
T Consensus        31 ~~~~i~l~~g~p~--~~-~~~~~~~~~~~~~~~~~~~~y~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~  107 (399)
T PRK07681         31 GHKMIDLSIGNPD--MP-PADFVREEMVHTANQKESYGYTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLV  107 (399)
T ss_pred             CCCeEEeCCCCCC--CC-CCHHHHHHHHHHHhccccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHH
Confidence            5678898887643  44 46888888888765421 111 12333445566666655432  355 68999999999999


Q ss_pred             HHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCC
Q 011777          170 LAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS  249 (477)
Q Consensus       170 ~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~  249 (477)
                      .+++...  .+++.|++.+++|.++.......             |...+++|......+..|    .+++++.+.    
T Consensus       108 ~~~~~~~--~~Gd~Vlv~~P~y~~~~~~~~~~-------------G~~~~~v~~~~~~~~~~d----~~~l~~~~~----  164 (399)
T PRK07681        108 HLPMVYA--NPGDIILVPDPGYTAYETGIQMA-------------GATSYYMPLKKENDFLPD----LELIPEEIA----  164 (399)
T ss_pred             HHHHHhC--CCCCEEEECCCCccchHHHHHhc-------------CCEEEEEecCCCCCCcCC----HHHHHHhcc----
Confidence            9887653  35678999999998875544333             223333322111112111    356666554    


Q ss_pred             CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cc---cCCCcceeeeccccc-
Q 011777          250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ET---QGVIPDIVTMAKGIG-  324 (477)
Q Consensus       250 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~---~gv~pDivt~sK~lg-  324 (477)
                      .++++|++...+|++| .+.+++.+++|.++|++||++||+||+|.+|...+.....+ ..   .+....+-+|||.++ 
T Consensus       165 ~~~k~v~l~~P~NPTG-~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  243 (399)
T PRK07681        165 DKAKMMILNFPGNPVP-AMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSL  243 (399)
T ss_pred             ccceEEEEeCCCCCcC-cCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCC
Confidence            2455666653356666 55688899999999999999999999999885444111111 11   122233457999998 


Q ss_pred             CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc
Q 011777          325 NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGR  404 (477)
Q Consensus       325 ~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~  404 (477)
                      .|+|+||+++++++++.+.......+++.+.+.+.++.++|+..  +.+.++.++..+..++.+.+...++++....+..
T Consensus       244 ~GlRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~~  321 (399)
T PRK07681        244 AGSRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAALRNG--AAFCEKNRGIYQERRDTLVDGFRTFGWNVDKPAG  321 (399)
T ss_pred             ccceeEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCe
Confidence            79999999999999988876554456778888888888888642  2333333333333333333333334422112334


Q ss_pred             ceeEEEEEeeCCCCCCccHHHHHHHHHHHHH-cCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777          405 GLMVGMELVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDY  472 (477)
Q Consensus       405 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~  472 (477)
                      |.++|+++...        ....++.+.+++ +||.+.++..+    .+++||+..  .+++++++++++|.+
T Consensus       322 g~f~~~~l~~~--------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~--~~~~~~~~~l~~l~~  384 (399)
T PRK07681        322 SMFVWAEIPKG--------WTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALV--QDEEVLQQAVENIRN  384 (399)
T ss_pred             eeEEEEECCCC--------CCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence            77888877321        123567777776 89999987432    368999754  678999999999987

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.95  E-value=2.6e-25  Score=228.39  Aligned_cols=351  Identities=13%  Similarity=0.051  Sum_probs=219.2

Q ss_pred             eeEEeeeccEEEeCC----------CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCCh-HHHHHHHHHH
Q 011777           80 LNIVEGKMQYLFDEN----------GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH-AIADFAEALA  148 (477)
Q Consensus        80 ~~~~~g~G~~~~d~d----------G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~-~~~~l~~~La  148 (477)
                      +....++|.+|.+.+          +...+||..|..   ..-..|.+.+++.+......    .|..+ ...+|++.++
T Consensus        59 i~~~~~~G~~v~~~~~~~~~~~~~~~~~~i~L~~g~p---~~~~~p~~~~~~~~~~~~~~----~Y~~~~g~~~lr~~ia  131 (431)
T PRK15481         59 AQSQGRNGTVIRGSPSPVALEGGDPGTPLHDLAGGNP---DPQRLPDLSRYFARLSRTPR----LYGDAPVSPELHAWAA  131 (431)
T ss_pred             EEEeCCCceEEccCcchhhhcccCCcchhhhhhcCCC---ChhHhHHHHHHHHHhhhhhh----hcCCcCCCHHHHHHHH
Confidence            445566777775422          223456554432   11123566777666544321    12211 1234555555


Q ss_pred             hhCC---CCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCc
Q 011777          149 SKMP---GNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPY  225 (477)
Q Consensus       149 ~~~~---~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (477)
                      +++.   ...++|++|+|+++|+..+++....  +++.|++.+++|.++.......+             ...+++|...
T Consensus       132 ~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~~--pgd~Vlv~~P~y~~~~~~~~~~g-------------~~~~~v~~~~  196 (431)
T PRK15481        132 RWLRDDCPVAFEIDLTSGAIDAIERLLCAHLL--PGDSVAVEDPCFLSSINMLRYAG-------------FSASPVSVDA  196 (431)
T ss_pred             HHHhhccCCcCeEEEecCcHHHHHHHHHHhCC--CCCEEEEeCCCcHHHHHHHHHcC-------------CeEEeeccCC
Confidence            5432   1235899999999999999886543  56889999999988765544432             2222222110


Q ss_pred             CCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecc-cCCCCCeeeCCchhHHHHHHHHHHh-CcEEEEcCcccCccCCCCC
Q 011777          226 HGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAET-IQGVGGAVELAPGYLKLVYDIVRKA-GGVCIADEVQTGFGRTGSH  303 (477)
Q Consensus       226 ~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~~~~-gillI~DEv~~gfgr~G~~  303 (477)
                       ..++      .++++++++    .+++++++.| .||++| ...+++.+++|.++|++| +++||+||+|..|...+ .
T Consensus       197 -~g~~------~~~l~~~~~----~~~k~i~~~p~p~NPTG-~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~-~  263 (431)
T PRK15481        197 -EGMQ------PEKLERALA----QGARAVILTPRAHNPTG-CSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSP-Y  263 (431)
T ss_pred             -CCCC------HHHHHHHHh----cCCCEEEECCCCCCCCC-ccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCC-C
Confidence             1122      477888775    2455666654 555666 556888999999999999 99999999999885433 1


Q ss_pred             Cccccc-cCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 011777          304 YWGFET-QGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGS  382 (477)
Q Consensus       304 ~~~~~~-~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~  382 (477)
                      .-.... .....-+-+|||.++.|+|+||+++++++++.+.......+++.+.+++.++.++|+.-..+++++.+++..+
T Consensus       264 ~~~~~~~~~~vi~~~SfSK~~~~GlRiG~~i~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~  343 (431)
T PRK15481        264 HSVIPQTTQRWALIRSVSKALGPDLRLAFVASDSATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYA  343 (431)
T ss_pred             CCCCcCCCCCEEEEeeeccccCCCceeEEEeCCHHHHHHHHHHHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            111111 1111223379999999999999999999988886544444566789999999998874322222333333333


Q ss_pred             HHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC-----CCEEEEeCCCC
Q 011777          383 HLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH-----GNVFRIKPPMC  457 (477)
Q Consensus       383 ~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-----~~~iRi~p~~~  457 (477)
                      ..++.+.+...+++.....+..|+++|+.+..          ...++.+.|.++||.+.++..+     ++++||+... 
T Consensus       344 ~~r~~~~~~L~~~~~~~~~p~gg~f~~~~l~~----------~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~-  412 (431)
T PRK15481        344 QRRQKLARALQQYGIAIPSPGDGLNLWLPLDT----------DSQATALTLAKSGWLVREGEAFGVSAPSHGLRITLST-  412 (431)
T ss_pred             HHHHHHHHHHHHcCCccccCCCeEEEEEECCC----------CHHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCC-
Confidence            33333333333344322234568888887731          1346778888999999997543     3589998654 


Q ss_pred             CcHHHHHHHHHHHHHHHhh
Q 011777          458 FTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       458 ~t~e~i~~~l~~l~~~l~~  476 (477)
                      .+++++++++++|.+++.+
T Consensus       413 ~~~~~i~~~~~~l~~~~~~  431 (431)
T PRK15481        413 LNDAEINRLAADLHQALNR  431 (431)
T ss_pred             CChHHHHHHHHHHHHHhcC
Confidence            5789999999999998753

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.95  E-value=3.2e-25  Score=223.04  Aligned_cols=322  Identities=16%  Similarity=0.166  Sum_probs=215.4

Q ss_pred             CEEEeecCCcccccCCCC-CHHHHHHHHHHHhhc--------cccccc----cCChHHHHHHHHHHhhCCCCCCEEEEeC
Q 011777           96 RRYLDAFAGIVTVSCGHC-HPDVLNAIFEQSKLL--------QHATTI----YLHHAIADFAEALASKMPGNLKVVYFVN  162 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~-~p~v~~Av~~~l~~~--------~~~~~~----~~~~~~~~l~~~La~~~~~~~~~v~~~~  162 (477)
                      .+++||.++.+   ||++ +|++.+++.+++.+.        .+....    +.++...+++++|+++++.  +.+++.+
T Consensus         4 ~~~~~~~s~~Y---L~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~--~~~l~~~   78 (370)
T PRK05937          4 SLSIDFVTNDF---LGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGA--PEAFIVP   78 (370)
T ss_pred             CceEEeECCCc---cCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCC--CeEEEEC
Confidence            35778877664   7764 899999999988774        222211    2456789999999999976  4668888


Q ss_pred             ChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHH
Q 011777          163 SGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQD  242 (477)
Q Consensus       163 sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~  242 (477)
                      ||+.||...+.   ...+++++|+.+..+|+.....+....           +.. +.+      ++. |    ++++++
T Consensus        79 sG~~a~~~~~~---~~~~~~d~ii~d~~~H~sv~~~~~~~~-----------~~~-~~~------~~~-d----~~~l~~  132 (370)
T PRK05937         79 SGYMANLGLCA---HLSSVTDYVLWDEQVHISVVYSLSVIS-----------GWH-QSF------RHN-D----LDHLES  132 (370)
T ss_pred             ChHHHHHHHHH---HhCCCCCEEEEEhhhhHHHHHHHHHcC-----------Cce-EEe------cCC-C----HHHHHH
Confidence            99999864333   233567889999999998776655421           100 111      111 1    477888


Q ss_pred             HHhccC--CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-C-ccCCCCCCccc--cccCCCcce
Q 011777          243 HIDFGT--SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-G-FGRTGSHYWGF--ETQGVIPDI  316 (477)
Q Consensus       243 ~i~~~~--~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-g-fgr~G~~~~~~--~~~gv~pDi  316 (477)
                      +++...  .+++.+|+++++++++|.+.|    +++|.++|+++|+++|+||+|+ | ++.+| ..+..  ...+..+|+
T Consensus       133 ~l~~~~~~~~~~~~v~v~~v~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g-~g~~~~~~~~~~~~~~  207 (370)
T PRK05937        133 LLESCRQRSFGRIFIFVCSVYSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDG-KGFCHSLGYENFYAVL  207 (370)
T ss_pred             HHHhhhccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCC-CchHHhhCCCCCcEEE
Confidence            886322  134567889999999999888    9999999999999999999998 3 45555 22111  111233678


Q ss_pred             eeecccccC-ccceEEEEeCHHHHHhhcc--cccccCCCCcHHHHHHHHHHHHhhchh--hHHHHHHHHHHHHHHHHHHH
Q 011777          317 VTMAKGIGN-GLPLGAVVTTPEIANVMAQ--KIQFNTFGGNPVCSAGGLAVLRVIDKE--RRQAHCADVGSHLLGRLRTL  391 (477)
Q Consensus       317 vt~sK~lg~-G~pig~v~~~~~~~~~~~~--~~~~~t~~~~~~~~aaa~a~l~~l~~~--~~~~~~~~~~~~l~~~L~~l  391 (477)
                      .||||++|+ |   +++++.+++.+.+..  ..+..+.+.++.+++++.++++.+.++  ...++++++.+++++.|...
T Consensus       208 ~tlsK~~g~~G---~~vl~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~~  284 (370)
T PRK05937        208 VTYSKALGSMG---AALLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSSA  284 (370)
T ss_pred             EechhhhhcCc---eEEEcCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCC
Confidence            899999985 5   445666776555432  123334456788888888999887543  24455555555555544221


Q ss_pred             HHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-CCCCEEEEeCCCCCcHHHHHHHHHHH
Q 011777          392 QERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-LHGNVFRIKPPMCFTKDDADFLVDAL  470 (477)
Q Consensus       392 ~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~~iRi~p~~~~t~e~i~~~l~~l  470 (477)
                                 +.+....+.+..         .....+.+.|.++||.+.... ...+++||+++..+|++||+++++.|
T Consensus       285 -----------~~~~~~~i~~~~---------~~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~t~edid~l~~~L  344 (370)
T PRK05937        285 -----------APGCVQPIFLPG---------ISEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFNTEDEVDILVSVL  344 (370)
T ss_pred             -----------CCCCEEEEEeCC---------hhHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence                       112222233311         123578888999999886431 12468999999999999999999999


Q ss_pred             HHHHhh
Q 011777          471 DYSMSK  476 (477)
Q Consensus       471 ~~~l~~  476 (477)
                      ++++++
T Consensus       345 ~~~~~~  350 (370)
T PRK05937        345 ATYLEK  350 (370)
T ss_pred             HHHHHH
Confidence            988764

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.95  E-value=2.6e-25  Score=225.40  Aligned_cols=344  Identities=11%  Similarity=0.032  Sum_probs=211.3

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc---ccccccCChHHHHHHHHHHhhCC--CCCC-EEEEeCChHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ---HATTIYLHHAIADFAEALASKMP--GNLK-VVYFVNSGTEA  167 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~---~~~~~~~~~~~~~l~~~La~~~~--~~~~-~v~~~~sGseA  167 (477)
                      +|+.++||..|..  .++ .++.+.+++.+.+....   +....+..+.+..+++++.+..+  .+.+ +|++|+|+++|
T Consensus        28 ~~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~a  104 (388)
T PRK07366         28 AGKELIDLSLGSS--DLP-APAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEG  104 (388)
T ss_pred             cCCCeEEeCCCCC--CCC-CCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHH
Confidence            4666788877764  344 47889999988775321   11112223445555555554433  4456 69999999999


Q ss_pred             HHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc
Q 011777          168 NELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG  247 (477)
Q Consensus       168 ~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~  247 (477)
                      +..+++....  +++.|++.+++|.++...+...+             ...+++|......+..|    ++++++.+.  
T Consensus       105 l~~~~~~l~~--~gd~Vlv~~P~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~d----~~~l~~~~~--  163 (388)
T PRK07366        105 TAHLPLAVLN--PGDFALLLDPGYPSHAGGVYLAG-------------GQIYPMPLRAENDFLPV----FADIPTEVL--  163 (388)
T ss_pred             HHHHHHHhCC--CCCEEEEcCCCCcchHHHHHhcC-------------CEEEEEECCCccCCCCC----HHHHHHhhc--
Confidence            9998886433  56889999999988755444332             22222222111112111    244544433  


Q ss_pred             CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCC-Cccc---ccc-CCCcceeeeccc
Q 011777          248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH-YWGF---ETQ-GVIPDIVTMAKG  322 (477)
Q Consensus       248 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~-~~~~---~~~-gv~pDivt~sK~  322 (477)
                        .++++|++.+.+|++| ...+.+.+++|.++|++||++||+||+|..|.+.+.. ...+   +.. ....-+-+|||.
T Consensus       164 --~~~k~i~l~~p~NPTG-~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~  240 (388)
T PRK07366        164 --AQARLMVLSYPHNPTT-AIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKS  240 (388)
T ss_pred             --ccceEEEEeCCCCCCC-ccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccc
Confidence              2345566666667777 4568899999999999999999999999988654421 1111   111 111223379999


Q ss_pred             cc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee
Q 011777          323 IG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV  401 (477)
Q Consensus       323 lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v  401 (477)
                      +| .|+|+||+++++++++.+........++..+..+.++.+++.  +.++++++.++..+..++.+.+..++++.....
T Consensus       241 ~g~~GlRiG~~v~~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~--~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~  318 (388)
T PRK07366        241 YNMGGFRIGFAIGNAQLIQALRQVKAVVDFNQYRGILNGAIAALT--GPQATVQQTVQIFRQRRDAFINALHQIGWPVPL  318 (388)
T ss_pred             cCCcchhheehcCCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccC
Confidence            98 799999999999999888765433344443333445555553  223444444444444444444444444432233


Q ss_pred             eccceeEEEEEeeCCCCCCccHHHHHHHHHHH-HHcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          402 RGRGLMVGMELVTDRKEKTPAKAETAVLFEKL-RELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       402 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      +..|+++|+++....      .....++.+.+ .++||.+.|+..+    .+++||+..  .+++++++++++|.+.+
T Consensus       319 p~~g~f~~~~~~~~~------~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~l~rl~~~l  388 (388)
T PRK07366        319 PEATMYVWAKLPEPW------QGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALV--HDPDILEEAVERIAAFL  388 (388)
T ss_pred             CCeeEEEEEECCccc------CCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEec--CCHHHHHHHHHHHHHhC
Confidence            456788888873210      00134566655 5679999997432    368999754  57999999999998753

>PLN02483 serine palmitoyltransferase

Probab=99.95  E-value=1.1e-24  Score=225.47  Aligned_cols=333  Identities=16%  Similarity=0.138  Sum_probs=222.7

Q ss_pred             eCCCCEEEeecCCcccccCCCC--CHHHHHHHHHHHhhcccc--ccc---cCChHHHHHHHHHHhhCCCCCCEEEEeCCh
Q 011777           92 DENGRRYLDAFAGIVTVSCGHC--HPDVLNAIFEQSKLLQHA--TTI---YLHHAIADFAEALASKMPGNLKVVYFVNSG  164 (477)
Q Consensus        92 d~dG~~ylD~~~g~~~~~lGh~--~p~v~~Av~~~l~~~~~~--~~~---~~~~~~~~l~~~La~~~~~~~~~v~~~~sG  164 (477)
                      ..+++++|+|.+..+   ||.+  ++.+.+++.+++++....  .+.   +..+...+++++|+++++.  +..++.++|
T Consensus        96 ~~~~~~~~n~~s~~Y---Lgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~--~~ai~~~~G  170 (489)
T PLN02483         96 TTKTRRCLNLGSYNY---LGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGK--PAAIVFGMG  170 (489)
T ss_pred             cCCCceEEEeecCCc---cCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCC--CcEEEECCH
Confidence            346789999987665   6654  677888888888775321  222   3467889999999999974  344555778


Q ss_pred             HHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHH
Q 011777          165 TEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHI  244 (477)
Q Consensus       165 seA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i  244 (477)
                      +.++..++...  ..+++.|++.++.|++...+.. ..            |.....++.      + |    .+++++++
T Consensus       171 ~~an~~~i~al--~~~Gd~Vi~d~~~h~s~~~~~~-~~------------Ga~v~~~~~------~-d----~~~le~~l  224 (489)
T PLN02483        171 YATNSTIIPAL--IGKGGLIISDSLNHNSIVNGAR-GS------------GATIRVFQH------N-T----PSHLEEVL  224 (489)
T ss_pred             HHHHHHHHHHh--CCCCCEEEEcchhhHHHHHHHH-Hc------------CCeEEEEeC------C-C----HHHHHHHH
Confidence            88888777653  2356677777777766544322 21            222222111      1 1    24555554


Q ss_pred             hcc----C-----CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccC--ccCCCCCCccccccCCC
Q 011777          245 DFG----T-----SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG--FGRTGSHYWGFETQGVI  313 (477)
Q Consensus       245 ~~~----~-----~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g--fgr~G~~~~~~~~~gv~  313 (477)
                      +..    .     +....+|++|++.++.|.+.+    +++|.++|++||++||+||+|+-  +|++| .. ..+++++.
T Consensus       225 ~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~----l~~I~~la~~~~~~livDEa~s~g~~G~~G-~g-~~~~~~v~  298 (489)
T PLN02483        225 REQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCK----LPEIVAVCKKYKAYVYLDEAHSIGAVGKTG-RG-VCELLGVD  298 (489)
T ss_pred             HhhhhccccccccCCceEEEEECCCCCCCCcccC----HHHHHHHHHHcCCEEEEECcCccCccCCCC-Cc-hHHhcCCC
Confidence            311    1     112458889999999888877    99999999999999999999972  34555 21 23455554


Q ss_pred             c---cee--eecccccC-ccceEEEEeCHHHHHhhcccccccCCC--CcHHHHHHHHHHHHhhchh-------hHHHHHH
Q 011777          314 P---DIV--TMAKGIGN-GLPLGAVVTTPEIANVMAQKIQFNTFG--GNPVCSAGGLAVLRVIDKE-------RRQAHCA  378 (477)
Q Consensus       314 p---Div--t~sK~lg~-G~pig~v~~~~~~~~~~~~~~~~~t~~--~~~~~~aaa~a~l~~l~~~-------~~~~~~~  378 (477)
                      |   |++  ||||++|+ |   ||+++++++++.+.......+++  .+|..++++.++|+.+..+       +..++++
T Consensus       299 ~~~~dI~~~SfSKs~g~~G---G~i~~~~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~  375 (489)
T PLN02483        299 PADVDIMMGTFTKSFGSCG---GYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIR  375 (489)
T ss_pred             cccCcEEEEecchhcccCc---eEEEcCHHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHH
Confidence            3   555  89999985 5   99999999999987654444443  3566777778888766421       3456777


Q ss_pred             HHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-----CCCEEEEe
Q 011777          379 DVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-----HGNVFRIK  453 (477)
Q Consensus       379 ~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi~  453 (477)
                      ++.+++++.|+++  ...+..  ...+.+.++.+..        .....++.+.|+++||.+.+.+.     ..+.+||+
T Consensus       376 ~~~~~l~~~L~~~--G~~v~~--~~~sp~~~l~l~~--------~~~~~~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~  443 (489)
T PLN02483        376 ENSNFFRSELQKM--GFEVLG--DNDSPVMPIMLYN--------PAKIPAFSRECLKQNVAVVVVGFPATPLLLARARIC  443 (489)
T ss_pred             HHHHHHHHHHHHC--CCcccC--CCCCCEEEEEECC--------HHHHHHHHHHHHHCCcEEeeeCCCCCCCCCceEEEE
Confidence            7888888888775  222111  1223455555521        12355788999999999985422     12689999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHhh
Q 011777          454 PPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       454 p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ++..+|+|||++++++|+++++.
T Consensus       444 isa~~t~edId~~l~~L~~~~~~  466 (489)
T PLN02483        444 ISASHSREDLIKALEVISEVGDL  466 (489)
T ss_pred             eCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998753

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.95  E-value=7.2e-25  Score=223.11  Aligned_cols=354  Identities=12%  Similarity=0.049  Sum_probs=220.7

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhc---cccccccCChHHHHHHHHHHhhCC--CCCC-EEEEeCChHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL---QHATTIYLHHAIADFAEALASKMP--GNLK-VVYFVNSGTEA  167 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~---~~~~~~~~~~~~~~l~~~La~~~~--~~~~-~v~~~~sGseA  167 (477)
                      .|..++|+..|...   +..++.+.+++.+.+...   .+....+..+.+..+++.+.+..+  .+.+ +|++|+|+++|
T Consensus        31 ~~~~~~~l~~g~p~---~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~a  107 (403)
T PRK08636         31 AGEDIIDFSMGNPD---GPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEG  107 (403)
T ss_pred             cCCCEEEcCCcCCC---CCCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHH
Confidence            45568898777543   334566777777665431   122222334456677777766543  3455 79999999999


Q ss_pred             HHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc
Q 011777          168 NELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG  247 (477)
Q Consensus       168 ~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~  247 (477)
                      +..+++...  .+++.|++.+++|.+........             |...+++|......++-|.....+.++++++..
T Consensus       108 l~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~  172 (403)
T PRK08636        108 YVHLVQAIT--NPGDVAIVPDPAYPIHSQAFILA-------------GGNVHKMPLEYNEDFELDEDQFFENLEKALRES  172 (403)
T ss_pred             HHHHHHHhC--CCCCEEEEcCCCCcchHHHHHhc-------------CCEEEEEeccccccCccChhhhhhHHHHHHhhc
Confidence            999988653  36789999999998875544333             222333322111123333333334567766532


Q ss_pred             CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCC---cccccc-CCCcceeeecccc
Q 011777          248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHY---WGFETQ-GVIPDIVTMAKGI  323 (477)
Q Consensus       248 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~---~~~~~~-gv~pDivt~sK~l  323 (477)
                      . .++.++++...+|++| .+++.+.+++|.++|++|+++||+||+|..|...+...   ..++.. +....+.+|||.+
T Consensus       173 ~-~~~~~i~~~~P~NPTG-~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  250 (403)
T PRK08636        173 S-PKPKYVVVNFPHNPTT-ATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSY  250 (403)
T ss_pred             c-CCceEEEEeCCCCCCC-ccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEeccccc
Confidence            2 3455555554356666 56688999999999999999999999999885544111   112111 1222334699999


Q ss_pred             c-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeee
Q 011777          324 G-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR  402 (477)
Q Consensus       324 g-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~  402 (477)
                      | .|+|+||+++++++++.+........++.+.+.+.++..+++.  .+++++++++..+..++.+.+...+++.....+
T Consensus       251 ~~~GlRiG~iv~~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p  328 (403)
T PRK08636        251 NMAGWRVGFVVGNKKLVGALKKIKSWLDYGMFTPIQVAATIALDG--DQSCVEEIRETYRKRRDVLIESFANAGWELQKP  328 (403)
T ss_pred             CCccceeeeeeCCHHHHHHHHHHHHHhcccCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence            7 7999999999999998877644333456666777776666542  234444444444444444444443444221223


Q ss_pred             ccceeEEEEEeeCCCCCCccHHHHHHHHHH-HHHcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          403 GRGLMVGMELVTDRKEKTPAKAETAVLFEK-LRELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       403 g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~-l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ..|+++|+.+.....     .....++.+. +.++||.+.|+..+    .+++||+..  .+++++++++++|.++++.
T Consensus       329 ~~g~~~~~~l~~~~~-----~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~~~rl~~~l~~  400 (403)
T PRK08636        329 RASMFVWAKIPEPAR-----HLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALI--ENENRIRQAARNIKKFLKE  400 (403)
T ss_pred             CcceEEEEECCCccC-----CCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence            457888888732100     0013456655 44689999998432    378999764  6899999999999998864

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.95  E-value=5.1e-25  Score=220.03  Aligned_cols=328  Identities=19%  Similarity=0.184  Sum_probs=218.8

Q ss_pred             CEEEeecCCcccccCCCC-CHHHHHHHHHHHhhcccccc-----ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHC-HPDVLNAIFEQSKLLQHATT-----IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANE  169 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~-~p~v~~Av~~~l~~~~~~~~-----~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~  169 (477)
                      ++||.|+++.+   |||+ ||+|++++++++++..+..+     ....+...++++.|+++++.  +..+++++|++++.
T Consensus         1 ~~~~~~~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~iv~~sg~~a~~   75 (349)
T cd06454           1 KKVLNFCSNDY---LGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGK--EAALVFSSGYAAND   75 (349)
T ss_pred             CCceecccCCc---cccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCC--CCEEEeccHHHHHH
Confidence            46888887664   9997 99999999999987533211     13467788999999999865  35678889999999


Q ss_pred             HHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC-
Q 011777          170 LAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT-  248 (477)
Q Consensus       170 ~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~-  248 (477)
                      .+++.+.  .+++.|++.++.|... .......            |...+.++.     .  |    .++++++++... 
T Consensus        76 ~~~~~~~--~~gd~Vl~~~~~~~~~-~~~~~~~------------g~~~~~~~~-----~--~----~~~le~~i~~~~~  129 (349)
T cd06454          76 GVLSTLA--GKGDLIISDSLNHASI-IDGIRLS------------GAKKRIFKH-----N--D----MEDLEKLLREARR  129 (349)
T ss_pred             HHHHHhc--CCCCEEEEehhhhHHH-HHHHHHc------------CCceEEecC-----C--C----HHHHHHHHHHhhc
Confidence            8887553  3456677766554332 2111111            222222211     0  1    366777776321 


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC--CCc-cccccCCCccee--eecccc
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS--HYW-GFETQGVIPDIV--TMAKGI  323 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~--~~~-~~~~~gv~pDiv--t~sK~l  323 (477)
                      +.++++|+++++++++|...+    +++|.++|++||+++|+||+|. +|..+.  ... .........|++  +++|.+
T Consensus       130 ~~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~livD~a~~-~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  204 (349)
T cd06454         130 PYGKKLIVTEGVYSMDGDIAP----LPELVDLAKKYGAILFVDEAHS-VGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAF  204 (349)
T ss_pred             cCCCeEEEEeccccCCCCccC----HHHHHHHHHHcCCEEEEEcccc-ccccCCCCCChhhhccccccCcEEEeechhhh
Confidence            346789999998888897766    8999999999999999999986 332220  111 011111234554  689999


Q ss_pred             cCccceEEEEeCHHHHHhhccccc--ccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCcee
Q 011777          324 GNGLPLGAVVTTPEIANVMAQKIQ--FNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGD  400 (477)
Q Consensus       324 g~G~pig~v~~~~~~~~~~~~~~~--~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~  400 (477)
                      +.  +.|++++++++++.+.....  ..+.+.++..++++.++++.+.+ ++..+++.++.+++.+.|.++  ...... 
T Consensus       205 ~~--~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~~-  279 (349)
T cd06454         205 GA--VGGYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKEL--GFPVGG-  279 (349)
T ss_pred             cc--cCCEEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc--CCcccC-
Confidence            85  34899999998877754322  22335678888888999987765 556778888888888887664  222111 


Q ss_pred             eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-----CCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          401 VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-----HGNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       401 v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                       .+.+.+.++.+ .       ......++.+.|+++||.+.+++.     .++++||+++..++++++++++++|+++
T Consensus       280 -~~~~~~~~~~~-~-------~~~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         280 -SPSHIIPPLIG-D-------DPAKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             -CCCCcEEEEeC-C-------ChHHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence             12233333322 1       122356788999999999976421     2478999999989999999999999864

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=3.7e-25  Score=221.72  Aligned_cols=325  Identities=17%  Similarity=0.191  Sum_probs=215.7

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAML  173 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~  173 (477)
                      +|..++||..|..  .++ .+|.+.+++.+.++...    .|+.....+|++.++++++.+.++|++|+|+++++..+++
T Consensus        28 ~~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~----~Y~~~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~  100 (357)
T PRK14809         28 DPDDLVKLSSNEN--PHG-PSPAAVEAIREAAERVH----SYPKASHADLTAALADRWDVSPEQVWLANGGDGALDYLAR  100 (357)
T ss_pred             CccceeEecCCCC--CCC-CCHHHHHHHHHHHhhhh----cCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH
Confidence            4557899887654  455 57889999988765421    2444446788899999888778899999999999999888


Q ss_pred             HHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCee
Q 011777          174 MARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA  253 (477)
Q Consensus       174 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a  253 (477)
                      ...  .+++.|++.+++|..+.......+.           ++..++.+.  ...+..+    .+++++...     +++
T Consensus       101 ~~~--~~gd~V~v~~P~y~~~~~~~~~~g~-----------~~~~~~l~~--~~~~~~~----~~~~~~~~~-----~~k  156 (357)
T PRK14809        101 AML--DPGDTVLVPDPGFAYYGMSARYHHG-----------EVREYPVSK--ADDFEQT----ADTVLDAYD-----GER  156 (357)
T ss_pred             Hhc--CCCCEEEEeCCChHHHHHHHHHcCC-----------eEEEEeccc--CcCCCcC----HHHHHHhhc-----CCc
Confidence            653  3567899999998644332211110           122222211  1112211    234433322     234


Q ss_pred             EEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc-ccccCCCcceeeeccccc-CccceEE
Q 011777          254 GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG-FETQGVIPDIVTMAKGIG-NGLPLGA  331 (477)
Q Consensus       254 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~-~~~~gv~pDivt~sK~lg-~G~pig~  331 (477)
                      +|++...+|++|. .++.+.+++|.++|++ +++||+||+|..|...+ .... .+..+....+-+|||.++ .|+|+||
T Consensus       157 ~i~l~~p~NPTG~-~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~-~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~  233 (357)
T PRK14809        157 IVYLTSPHNPTGS-EIPLDEVEALAERTDE-ETLVVVDEAYGEFAERP-SAVALVEERDDVAVLRTFSKAYGLAGLRLGY  233 (357)
T ss_pred             EEEEeCCCCCCCc-CCCHHHHHHHHHhCcc-CcEEEEechhhhccCCc-hhHHHHhhCCCEEEEecchhHhcCcchhhee
Confidence            5555556677774 5577778888888875 78999999999886544 2221 122223334558999998 6999999


Q ss_pred             EEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEE
Q 011777          332 VVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGME  411 (477)
Q Consensus       332 v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~  411 (477)
                      +++++++++.+....  .+++.+++++.++.++|+   ++++.++.++..+..++.+.+.....    ..+..|++++++
T Consensus       234 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~----~~~~~g~f~~~~  304 (357)
T PRK14809        234 AVVPEEWADAYARVN--TPFAASELACRAGLAALD---DDEHVERTVETARWAREYIREELDAP----TWESAGNFVLAE  304 (357)
T ss_pred             eecCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHhcCc----cCCCCCCEEEEE
Confidence            999999998887543  467788898888888875   34444444444444445454443322    124568888887


Q ss_pred             EeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC--CCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          412 LVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH--GNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      +.        +   ..++.+.|.++||.+.++..+  .+++||+..   +++++++++++|.++++
T Consensus       305 ~~--------~---~~~~~~~l~~~gv~v~~g~~f~~~~~iRls~~---~~~~~~~~l~~L~~~l~  356 (357)
T PRK14809        305 VG--------D---ASAVAEAAQERGVIVRDCTSFGLPECIRITCG---TREETERAVEVLNEVLA  356 (357)
T ss_pred             CC--------C---HHHHHHHHHHCCEEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHHhc
Confidence            62        1   346778888999999998644  368999643   57999999999999875

>PRK08960 hypothetical protein; Provisional

Probab=99.95  E-value=9.1e-25  Score=221.29  Aligned_cols=341  Identities=12%  Similarity=0.035  Sum_probs=217.6

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhc--cccccccCChHHHHHHHHHHhhC--CCCCCEEEEeCChHHHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL--QHATTIYLHHAIADFAEALASKM--PGNLKVVYFVNSGTEANEL  170 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~--~~~~~~~~~~~~~~l~~~La~~~--~~~~~~v~~~~sGseA~~~  170 (477)
                      |..++|+..|...  ++ .++.+.+++.+.+...  .+....+..+.++.+++.+.+..  +.+.++|++|+|+++|+..
T Consensus        31 ~~~~i~l~~g~~~--~~-~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~  107 (387)
T PRK08960         31 GHDVIHLEIGEPD--FT-TAEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLL  107 (387)
T ss_pred             CCCeEEeCCCCCC--CC-CCHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHH
Confidence            4457887776653  33 4789999998887642  12122223344555555555432  3456789999999999999


Q ss_pred             HHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCC
Q 011777          171 AMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG  250 (477)
Q Consensus       171 Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~  250 (477)
                      ++.+..  .+++.|++.+++|.++.......+.           .+..++..  ....+..|    .++++++++   ++
T Consensus       108 ~~~~~~--~~gd~vlv~~p~y~~~~~~~~~~g~-----------~~~~v~~~--~~~~~~~d----~~~l~~~~~---~~  165 (387)
T PRK08960        108 ASSLLV--DPGKHWLLADPGYPCNRHFLRLVEG-----------AAQLVPVG--PDSRYQLT----PALVERHWN---AD  165 (387)
T ss_pred             HHHHhc--CCCCEEEEcCCCCcchHHHHHhcCC-----------eEEEEecC--cccCCCCC----HHHHHHHhC---cc
Confidence            887653  3668899999999887554332211           12222221  11112212    466777665   23


Q ss_pred             CeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee---eeccccc-Cc
Q 011777          251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV---TMAKGIG-NG  326 (477)
Q Consensus       251 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G  326 (477)
                      ...++++.| +|++| ...+.+.+++|.++|++||+++|+||+|.+|...+ ....  .....++++   +|||.+| .|
T Consensus       166 ~~~i~i~~p-~NPtG-~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~-~~~~--~~~~~~~vi~~~S~SK~~g~~G  240 (387)
T PRK08960        166 TVGALVASP-ANPTG-TLLSRDELAALSQALRARGGHLVVDEIYHGLTYGV-DAAS--VLEVDDDAFVLNSFSKYFGMTG  240 (387)
T ss_pred             ceEEEEECC-CCCCC-cCcCHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCC--hhhccCCEEEEeecccccCCcc
Confidence            445566666 45666 45688889999999999999999999999885543 2211  122334544   5999998 69


Q ss_pred             cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCcee-eeccc
Q 011777          327 LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGD-VRGRG  405 (477)
Q Consensus       327 ~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-v~g~g  405 (477)
                      +|+||+++++++++.+.......+.+.+.+.+.++.++++. ..+++.++.++..+..++.+.+...+++.... .+..|
T Consensus       241 lRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~-~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~  319 (387)
T PRK08960        241 WRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFEP-ETLAILEARRAEFARRRDFLLPALRELGFGIAVEPQGA  319 (387)
T ss_pred             cEEEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcCCCee
Confidence            99999999999998877654445667788999888888752 11233444333333334444444444443222 23346


Q ss_pred             eeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC-----CCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          406 LMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH-----GNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       406 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~-----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      +++|+++....    .   ...++++.|+ ++||.+.|+..+     ++++|++...  +.+++.+++++|.+++.
T Consensus       320 ~f~~~~~~~~~----~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~--~~~~l~~al~~l~~~~~  386 (387)
T PRK08960        320 FYLYADISAFG----G---DAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ--SLPRLQEAVERIARGLR  386 (387)
T ss_pred             EEEEEeccccC----C---CHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHh
Confidence            77788773210    1   1345776665 689999987332     3689998663  78999999999988764

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.94  E-value=1.6e-25  Score=224.51  Aligned_cols=323  Identities=11%  Similarity=0.109  Sum_probs=222.5

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLM  174 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~  174 (477)
                      ++..+|+..|.  +++| .+|++++++.+.+....    .|+.....+|++.|+++++.+.++|++++|++|++..+++.
T Consensus        28 ~~~~i~l~~ne--n~~~-~~~~v~~a~~~~~~~~~----~Yp~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~  100 (366)
T PRK01533         28 DHSFVKLASNE--NPFG-CSPRVLDELQKSWLDHA----LYPDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRA  100 (366)
T ss_pred             CCceEEeCCCC--CCCC-CCHHHHHHHHHHHHhcC----cCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHH
Confidence            45788887765  3566 57899999988765432    35555567889999998887888999999999999998886


Q ss_pred             HHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeE
Q 011777          175 ARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAG  254 (477)
Q Consensus       175 ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~  254 (477)
                      ...  +++.|++.+++|.++...+...             |...+.+|.. ...++      ++++++.++    +++++
T Consensus       101 l~~--~gd~vlv~~P~y~~~~~~~~~~-------------g~~v~~v~~~-~~~~d------~~~l~~~~~----~~~~~  154 (366)
T PRK01533        101 VLK--AGDNIVTAGATFPQYRHHAIIE-------------GCEVKEVALN-NGVYD------LDEISSVVD----NDTKI  154 (366)
T ss_pred             hcC--CCCEEEEcCCcHHHHHHHHHHc-------------CCEEEEeecC-CCCcC------HHHHHHHhC----cCCcE
Confidence            532  5678999999998775543322             2222222221 11111      467777665    23444


Q ss_pred             EEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccc---cCCCcceeeeccccc-CccceE
Q 011777          255 FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET---QGVIPDIVTMAKGIG-NGLPLG  330 (477)
Q Consensus       255 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~---~gv~pDivt~sK~lg-~G~pig  330 (477)
                      +++...+|++|. ..+.+.+++|.++|++++ ++|+||+|..|...+........   .+...-+-+|||.+| .|+|+|
T Consensus       155 v~i~~P~NPTG~-~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG  232 (366)
T PRK01533        155 VWICNPNNPTGT-YVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVG  232 (366)
T ss_pred             EEEeCCCCCCCC-CcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHh
Confidence            444444666774 557888899999998877 56779999877543211111111   112222337999999 799999


Q ss_pred             EEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEE
Q 011777          331 AVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM  410 (477)
Q Consensus       331 ~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i  410 (477)
                      |+++++++++.+....  .+++.|.+++.++.++|+   ++++.++.++.....++++.+.....+ +...++.|.|+++
T Consensus       233 ~~i~~~~~~~~l~~~~--~~~~~~~~~q~aa~~~l~---~~~~~~~~~~~~~~~r~~~~~~l~~~g-~~~~~~~~nf~~~  306 (366)
T PRK01533        233 YAVGHEELIEKLNVVR--LPFNVSSLAQKAATIAFG---DDEFIEEIVRVNTEGLRQYESFCKENE-IPFYQSQTNFIFL  306 (366)
T ss_pred             HHhCCHHHHHHHHHhc--CCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHhCC-CccCCCcCcEEEE
Confidence            9999999999887543  467889999999999885   345555555555555555655555444 2334567889898


Q ss_pred             EEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          411 ELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      .+.        .   ...+.+.|+++||.+++.   .+++||+   ..+.+++++++++|+++++
T Consensus       307 ~~~--------~---~~~~~~~l~~~GI~Vr~~---~~~iRis---~~~~~~~~~l~~al~~~~~  354 (366)
T PRK01533        307 PVE--------N---GGEIYEACAHAGFIIRPF---PNGVRIT---VGTREQNEGVISVLQQHFE  354 (366)
T ss_pred             eCC--------C---HHHHHHHHHHCCcEEccC---CCceEEe---CCCHHHHHHHHHHHHHHHH
Confidence            762        1   346888999999999973   5789994   5688999999999998875

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.94  E-value=8.6e-25  Score=218.47  Aligned_cols=337  Identities=11%  Similarity=0.022  Sum_probs=211.8

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-ccccccCChHHHHHHHHHHhhCC--CCCC-EEEEeCChHHHHHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-HATTIYLHHAIADFAEALASKMP--GNLK-VVYFVNSGTEANELAM  172 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-~~~~~~~~~~~~~l~~~La~~~~--~~~~-~v~~~~sGseA~~~Al  172 (477)
                      +.+||..|..  .++ ..|++.+++.+...... |....+..+.+..+++.+.+..+  .+.+ +|++|+|+++|+..++
T Consensus         1 ~~~~~~~g~p--~~~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~   77 (350)
T TIGR03537         1 RLFDFGTGDP--KEP-TPPFIRKALIDAVPEVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFP   77 (350)
T ss_pred             CeEeccCCCC--CCC-CCHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHH
Confidence            3578887775  344 37889999988764322 11112223445566666655433  4455 8999999999999887


Q ss_pred             HHHHhcc-CCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCC
Q 011777          173 LMARLST-GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGK  251 (477)
Q Consensus       173 ~~ar~~~-~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~  251 (477)
                      ....... +++.|++.+++|.++...+...             |...++++......+..|    .++++++++    ++
T Consensus        78 ~~~~~~g~~~d~Vl~~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~~~----~~  136 (350)
T TIGR03537        78 LVFIDPEEDRRRVIFGTPGYPVYERGALFA-------------GGEPTAVKLKKEDGFLLR----LEKVEKSIL----EE  136 (350)
T ss_pred             HHHcCCCCCCceEEEcCCCCcchHHHHHhc-------------CCEEEEcccCcccCCccC----HHHHHHhhh----hc
Confidence            7553211 1268999999998876655433             233333332211222212    477777765    24


Q ss_pred             eeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCC--Ccceeeeccccc-Cccc
Q 011777          252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV--IPDIVTMAKGIG-NGLP  328 (477)
Q Consensus       252 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv--~pDivt~sK~lg-~G~p  328 (477)
                      ++++++.+.+|++| ...+.+.+++|.++|++||+++|+||+|..+...+ ........+.  ..-+.+|||.+| .|+|
T Consensus       137 ~~~i~i~~p~NPtG-~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~i~~~s~SK~~g~~GlR  214 (350)
T TIGR03537       137 TKIVWINYPHNPTG-ATAPRSYLKETIAMCREHGIILCSDECYTEIYFGE-PPHSALEVGIENVLAFHSLSKRSGMTGYR  214 (350)
T ss_pred             cEEEEEeCCCCCcC-cccCHHHHHHHHHHHHHcCcEEEEeccccccccCC-CCCchhhcCcCCEEEEeecccccCCcccc
Confidence            56666666677777 55688889999999999999999999998664332 2211111111  122336899997 5999


Q ss_pred             eEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeE
Q 011777          329 LGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMV  408 (477)
Q Consensus       329 ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~  408 (477)
                      +||+++++++.+.+.......+.+.+++.+.++.+++.   .+++.++.++..+..++.+.+...+++........|+++
T Consensus       215 iG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~~~g~~~~  291 (350)
T TIGR03537       215 SGFVAGDEKLISFLRKLRANFGVASPDFVQAAAKAAWS---DDNHVLERRKIFKRKRDLFIEFFNKVGLEYLYPDATFYL  291 (350)
T ss_pred             ceeeecCHHHHHHHHHHHHhhccCCCHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeEEEE
Confidence            99999999998887765433445566677777777664   233333333333333444444333444321222235567


Q ss_pred             EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777          409 GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDY  472 (477)
Q Consensus       409 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~  472 (477)
                      |+++...        ....++.+.|.++||.+.++..+    .+++|++.  ..+++++++++++|++
T Consensus       292 ~~~~~~~--------~~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~--~~~~~~~~~~l~~~~~  349 (350)
T TIGR03537       292 WVKVPSG--------IDAKDYALRLLENGIVVAPGENFGSGEEGYVRVAL--VPTLEECEEALRLWER  349 (350)
T ss_pred             EEECCCC--------CCHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEEe--cCCHHHHHHHHHHHhc
Confidence            7776321        12457888899999999987543    47899964  4688999999998875

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.94  E-value=1.3e-24  Score=220.94  Aligned_cols=341  Identities=12%  Similarity=0.012  Sum_probs=213.0

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-ccccccCChHHHHHHHHHHhhCC---CCC-CEEEEeCChHHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-HATTIYLHHAIADFAEALASKMP---GNL-KVVYFVNSGTEAN  168 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-~~~~~~~~~~~~~l~~~La~~~~---~~~-~~v~~~~sGseA~  168 (477)
                      .|+.++|+..|...  ++ .++.+.+++.+.+.... |....+..+.+..+++.+.+.++   .+. ++|++|+|+++|+
T Consensus        27 ~~~~~i~l~~~~p~--~~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al  103 (396)
T PRK09147         27 ADLPPISLSIGEPK--HP-TPAFIKDALAANLDGLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREAL  103 (396)
T ss_pred             cCCCeEecCCCCCC--CC-CCHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHH
Confidence            47888998887753  43 46788999887665422 22222334556667776665544   344 3899999999999


Q ss_pred             HHHHHHHHhc-cCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc
Q 011777          169 ELAMLMARLS-TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG  247 (477)
Q Consensus       169 ~~Al~~ar~~-~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~  247 (477)
                      ..+++..... ..++.|++.+++|.++.......             |...+.+|......|..|    .+++++.+.  
T Consensus       104 ~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~-------------g~~~~~vp~~~~~~~~~d----~~~l~~~~~--  164 (396)
T PRK09147        104 FAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLA-------------GAEPYFLNCDPANNFAPD----FDAVPAEVW--  164 (396)
T ss_pred             HHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhc-------------CCEEEEeccCccccCccC----HHHHHHHHh--
Confidence            9988865432 11567999999998775443322             222333322111112222    356666554  


Q ss_pred             CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC-CCcc-c---ccc-----CCCccee
Q 011777          248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS-HYWG-F---ETQ-----GVIPDIV  317 (477)
Q Consensus       248 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~-~~~~-~---~~~-----gv~pDiv  317 (477)
                        .+++++++...+|++| .+.+++.+++|.++|++|+++||+||+|..|.+.+. .... .   ...     +...-+-
T Consensus       165 --~~~k~i~l~nP~NPTG-~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~  241 (396)
T PRK09147        165 --ARTQLLFVCSPGNPTG-AVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFH  241 (396)
T ss_pred             --hccEEEEEcCCCCCcC-ccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEe
Confidence              2455555544466667 566899999999999999999999999998754441 1111 1   011     1122234


Q ss_pred             eeccccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCC
Q 011777          318 TMAKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHD  396 (477)
Q Consensus       318 t~sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~  396 (477)
                      +|||.++ .|+|+||+++++++++.+.......+++.+++.+.++.+.+.   .++++++.++..+..++.+.+...++ 
T Consensus       242 S~SK~~~~~GlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~~~-  317 (396)
T PRK09147        242 SLSKRSNVPGLRSGFVAGDAALLKKFLLYRTYHGCAMPPAVQAASIAAWN---DEAHVRENRALYREKFDAVTPILAPV-  317 (396)
T ss_pred             ccccccCCccceeeeecCCHHHHHHHHHHhhhcccCCCHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            7999987 599999999999999887654444556778888888877763   23333333322222222232222222 


Q ss_pred             CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----------CCEEEEeCCCCCcHHHHHH
Q 011777          397 IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----------GNVFRIKPPMCFTKDDADF  465 (477)
Q Consensus       397 ~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----------~~~iRi~p~~~~t~e~i~~  465 (477)
                      .....+..|+++|+++..          ....+.+.|+ ++||.+.|+..+          .+++||++.  .+++++++
T Consensus       318 ~~~~~p~~g~f~~~~~~~----------~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~--~~~~~l~~  385 (396)
T PRK09147        318 LDVQLPDAGFYLWAKVPG----------DDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALV--APLAECVE  385 (396)
T ss_pred             cCCCCCCeeEEEEEECCC----------CHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEec--CCHHHHHH
Confidence            111223457888888730          1245666665 679999887432          368999654  57899999


Q ss_pred             HHHHHHHHHh
Q 011777          466 LVDALDYSMS  475 (477)
Q Consensus       466 ~l~~l~~~l~  475 (477)
                      ++++|.+++.
T Consensus       386 ~l~rl~~~~~  395 (396)
T PRK09147        386 AAERIVDFCR  395 (396)
T ss_pred             HHHHHHHHhc
Confidence            9999998774

>PRK09148 aminotransferase; Validated

Probab=99.94  E-value=9.1e-25  Score=222.33  Aligned_cols=347  Identities=12%  Similarity=0.025  Sum_probs=216.1

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhc---cccccccCChHHHHHHHHHHhhCC--CCCC-EEEEeCChHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL---QHATTIYLHHAIADFAEALASKMP--GNLK-VVYFVNSGTEA  167 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~---~~~~~~~~~~~~~~l~~~La~~~~--~~~~-~v~~~~sGseA  167 (477)
                      .|+.+|||..|..  .++ .++.+.+++.+.+...   .|....+..+.+..+++.+.+..+  .+.+ +|++|+|++++
T Consensus        28 ~~~~~i~l~~~~p--~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~a  104 (405)
T PRK09148         28 AGADIIDLGMGNP--DLP-TPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEG  104 (405)
T ss_pred             cCCCeEEcCCCCC--CCC-CCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHH
Confidence            4667899877654  344 3678888888766431   111112233445566666654433  3345 79999999999


Q ss_pred             HHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc
Q 011777          168 NELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG  247 (477)
Q Consensus       168 ~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~  247 (477)
                      +..+++....  +++.|++.+++|.++.......             |...+++|......+       .++++++++..
T Consensus       105 l~~~~~~l~~--~gd~Vl~~~P~y~~~~~~~~~~-------------g~~v~~v~~~~~~~~-------~~~l~~~~~~~  162 (405)
T PRK09148        105 FANMAQAITA--PGDVILCPNPSYPIHAFGFIMA-------------GGVIRSVPAEPDEEF-------FPALERAVRHS  162 (405)
T ss_pred             HHHHHHHhcC--CCCEEEEcCCCCcccHHHHHhc-------------CCEEEEEeCCCCCCC-------ccCHHHHHhhc
Confidence            9998886533  5678999999999875443322             222222222111111       24555555432


Q ss_pred             CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cc---cCCCcceeeecccc
Q 011777          248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ET---QGVIPDIVTMAKGI  323 (477)
Q Consensus       248 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~---~gv~pDivt~sK~l  323 (477)
                      .+ ++.++++...+|++| ..++.+.+++|.++|++||+++|+||+|..|.+.+...-.. ..   .+....+-+|||.+
T Consensus       163 ~~-~~~~v~l~~P~NPtG-~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~  240 (405)
T PRK09148        163 IP-KPIALIVNYPSNPTA-YVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTF  240 (405)
T ss_pred             cc-cceEEEEeCCCCCCC-cCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEecccccc
Confidence            23 444444444355666 55688999999999999999999999999875544111111 11   11222344799999


Q ss_pred             c-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeee
Q 011777          324 G-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR  402 (477)
Q Consensus       324 g-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~  402 (477)
                      + .|+|+||+++++++++.+.......+++.+.+++.++.+.|+.  .+++.++.++..+..++.+.+...+++.....+
T Consensus       241 ~~pGlR~G~~v~~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p  318 (405)
T PRK09148        241 SMAGWRMGFAVGNERLIAALTRVKSYLDYGAFTPIQVAATAALNG--PQDCIAEMRELYKKRRDVLVESFGRAGWDIPPP  318 (405)
T ss_pred             CCcchheeeeeCCHHHHHHHHHHHHHhccCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC
Confidence            9 7999999999999998887654445667788888888888753  233444433333333333333333344322223


Q ss_pred             ccceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          403 GRGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       403 g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ..|+++|+++.....     .....++.+.|+ ++||.+.|+..+    .+++||+..  .+++++++++++|.+++.+
T Consensus       319 ~~g~f~~~~l~~~~~-----~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~--~~~~~l~~al~~l~~~l~~  390 (405)
T PRK09148        319 AASMFAWAPIPEAFR-----HLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALV--ENEQRIRQAARNIKRFLSS  390 (405)
T ss_pred             CeeEEEEEECCCccC-----CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence            456788887632110     001345666655 689999997432    368999764  6889999999999988754

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=4.8e-25  Score=221.71  Aligned_cols=326  Identities=16%  Similarity=0.136  Sum_probs=219.0

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR  176 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar  176 (477)
                      .++++..|..  .+| .+|++.+++.+.+....    .|..+...+|++.|+++++.+.++|++++|+++++..+++...
T Consensus        33 ~~~~l~~~~~--~~~-~~~~~~~a~~~~~~~~~----~Y~~~~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~  105 (369)
T PRK08153         33 FRARIGANES--GFG-PSPSVIAAMREAAAEIW----KYGDPENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYV  105 (369)
T ss_pred             ceeEecCCCC--CCC-CCHHHHHHHHHHHHHhh----cCCCCccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc
Confidence            4578776653  455 57899999988765321    2333346788899999887767899999999999999888553


Q ss_pred             hccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEE
Q 011777          177 LSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFI  256 (477)
Q Consensus       177 ~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi  256 (477)
                        .+++.|++.+++|++........             |...+.+|.  ... ..|    ++++++.+.   ..++++++
T Consensus       106 --~~gd~vlv~~p~y~~~~~~~~~~-------------g~~~~~vp~--~~~-~~~----~~~l~~~~~---~~~~~~i~  160 (369)
T PRK08153        106 --EPGDPVVTSLGAYPTFNYHVAGF-------------GGRLVTVPY--RDD-RED----LDALLDAAR---RENAPLVY  160 (369)
T ss_pred             --CCCCEEEECCCcchHHHHHHHHc-------------CCeEEEeeC--CCC-CCC----HHHHHHHhc---ccCCcEEE
Confidence              35678999999998765332222             112222221  000 011    344443332   23455554


Q ss_pred             e-cccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcc---eeeeccccc-CccceEE
Q 011777          257 A-ETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPD---IVTMAKGIG-NGLPLGA  331 (477)
Q Consensus       257 ~-epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pD---ivt~sK~lg-~G~pig~  331 (477)
                      + +| ++++|. ..+.+.+++|.++|+ ++++||+||+|..|++.| ....+..  ..++   +-||||.+| .|+|+||
T Consensus       161 l~~P-~NPtG~-~~~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~-~~~~~~~--~~~~~i~~~SfSK~~g~~GlRiG~  234 (369)
T PRK08153        161 LANP-DNPMGS-WHPAADIVAFIEALP-ETTLLVLDEAYCETAPAG-AAPPIDT--DDPNVIRMRTFSKAYGLAGARVGY  234 (369)
T ss_pred             EeCC-CCCCCC-CCCHHHHHHHHHhCC-CCcEEEEeCchhhhcCcc-cchhhhh--cCCCEEEEecchHhccCcchheee
Confidence            4 66 444564 557777888888887 499999999999987655 3322221  2234   337999999 7999999


Q ss_pred             EEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEE
Q 011777          332 VVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGME  411 (477)
Q Consensus       332 v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~  411 (477)
                      +++++++++.+....  .+++.|++++.++.++|+   ++++.++.++..+..++.+.+..++.+. ...+..|.+++++
T Consensus       235 ~v~~~~~~~~l~~~~--~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~~~~~L~~~g~-~~~p~~~~f~~~~  308 (369)
T PRK08153        235 AIGAPGTIKAFDKVR--NHFGMNRIAQAAALAALK---DQAYLAEVVGKIAAARDRIAAIARANGL-TPLPSATNFVAID  308 (369)
T ss_pred             eecCHHHHHHHHHhh--cCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCCC-ccCCCcCcEEEEE
Confidence            999999998876543  457889999999999885   3455666666666666766665555553 2334567777776


Q ss_pred             EeeCCCCCCccHHHHHHHHHHHHHcCceee-ccCC-CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          412 LVTDRKEKTPAKAETAVLFEKLRELGVLVG-KGGL-HGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~-~~~~-~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +..       .......+.+.|+++||.+. ++.. ..+++|++..   ++++++.++++|++++..
T Consensus       309 ~~~-------~~~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis~~---~~~~~~~~~~al~~~~~~  365 (369)
T PRK08153        309 CGR-------DGAFARAVLDGLIARDIFVRMPGVAPLDRCIRVSCG---PDEELDLFAEALPEALEA  365 (369)
T ss_pred             CCC-------CcccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC---CHHHHHHHHHHHHHHHHH
Confidence            521       11235678889999999995 4422 2468999644   799999999999998753

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.94  E-value=1.1e-24  Score=221.24  Aligned_cols=348  Identities=14%  Similarity=0.072  Sum_probs=215.3

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEANEL  170 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA~~~  170 (477)
                      +..++||..|...  ++ .++++.+++.+.+....  +....+....+..+++.+.+..+  .+.+++++++|+++|+..
T Consensus        30 ~~~~~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~  106 (393)
T PRK05764         30 GRDVISLGAGEPD--FD-TPEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYN  106 (393)
T ss_pred             cCCEEEeCCCCCC--CC-CCHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHH
Confidence            3457888887753  32 57899999988776422  11111122334444544443322  345689999999999999


Q ss_pred             HHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCC
Q 011777          171 AMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG  250 (477)
Q Consensus       171 Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~  250 (477)
                      ++.....  .++.|++.+++|.++...+...             |...+.++......+..|    .+++++.++    +
T Consensus       107 ~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~~l~----~  163 (393)
T PRK05764        107 AFMALLD--PGDEVIIPAPYWVSYPEMVKLA-------------GGVPVFVPTGEENGFKLT----VEQLEAAIT----P  163 (393)
T ss_pred             HHHHhcC--CCCEEEecCCCCcchHHHHHHc-------------CCEEEEEecCcccCCcCC----HHHHHHhhC----c
Confidence            8886533  5678999999988764443222             222222222111112111    366777664    2


Q ss_pred             CeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccc-----ccCCCcceeeeccccc-
Q 011777          251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE-----TQGVIPDIVTMAKGIG-  324 (477)
Q Consensus       251 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~-----~~gv~pDivt~sK~lg-  324 (477)
                      ++++|++...++++|. ..+.+.+++|.++|++||+++|+||+|..|...+..+.+..     ..+....+.+|||.++ 
T Consensus       164 ~~~~v~~~~p~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~  242 (393)
T PRK05764        164 KTKALILNSPSNPTGA-VYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAM  242 (393)
T ss_pred             cceEEEEECCCCCCCc-ccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccC
Confidence            4445444444566674 45778899999999999999999999988755442111221     1122223346999999 


Q ss_pred             CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc
Q 011777          325 NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGR  404 (477)
Q Consensus       325 ~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~  404 (477)
                      .|+|+||+++++++++.+.......+++.+++++.++.+.|+.  .+++.++.++..+..++.+.+...+++.+...++.
T Consensus       243 ~G~RiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~  320 (393)
T PRK05764        243 TGWRLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNG--PQDEVEEMRQAFEERRDLMVDGLNEIPGLECPKPE  320 (393)
T ss_pred             ccceeEEEecCHHHHHHHHHHHhhcccCCChHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCC
Confidence            7999999999999998887554445667788998888888862  22333344443333344444444444223333344


Q ss_pred             c-eeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCCC--CEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          405 G-LMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLHG--NVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       405 g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~--~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      | .++|+.+.....   .......++.+.++ ++||.+.++..++  +++||+  +..+++++++++++|.+++++
T Consensus       321 g~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis--~~~~~~~~~~~i~~l~~~~~~  391 (393)
T PRK05764        321 GAFYVFPNVSKLLG---KSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLS--YATSLEDLEEGLERIERFLES  391 (393)
T ss_pred             cceEEEEecccccc---cccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEE--ecCCHHHHHHHHHHHHHHHHh
Confidence            4 566776642110   00001346666664 5799999875443  799996  456899999999999998865

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.94  E-value=9e-25  Score=215.84  Aligned_cols=324  Identities=19%  Similarity=0.196  Sum_probs=228.2

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCC-CCCCEEEEeCChHHHHHHHHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMP-GNLKVVYFVNSGTEANELAMLMA  175 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~-~~~~~v~~~~sGseA~~~Al~~a  175 (477)
                      ..+|+.++.  +++| .+|.+.+++.+.++.+    ..|+++...++.+.+++++. .+.+.|+.+||.+|.++..+++.
T Consensus        23 ~~i~LssNe--nP~g-p~~~~~~~~~~~~~~~----~rYPd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~   95 (356)
T COG0079          23 GIIKLSSNE--NPYG-PPPKVIEAIRAALDKL----NRYPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAF   95 (356)
T ss_pred             cceeecCCC--CCCC-CCHHHHHHHHHHHHhh----ccCCCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHh
Confidence            688888876  4677 4589999998887743    35777788899999999987 66689999999999999999876


Q ss_pred             HhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEE
Q 011777          176 RLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGF  255 (477)
Q Consensus       176 r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~v  255 (477)
                      ..  +++.|++..++|.-+...+...+.           .+..++...     |..|    ++.+.+.+.   .+....+
T Consensus        96 ~~--~gd~vl~~~Ptf~~Y~~~a~~~g~-----------~~~~v~~~~-----~~~d----~~~~~~~~~---~~~~lv~  150 (356)
T COG0079          96 VE--PGDTVLIPEPTFSMYEIAAQLAGA-----------EVVKVPLKE-----FRLD----LDAILAAIR---DKTKLVF  150 (356)
T ss_pred             hc--CCCEEEEcCCChHHHHHHHHhcCC-----------eEEEecccc-----cccC----HHHHHHhhh---cCCCEEE
Confidence            54  458999999999766555444432           122222211     2222    244444444   2233466


Q ss_pred             EecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee---eeccccc-CccceEE
Q 011777          256 IAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV---TMAKGIG-NGLPLGA  331 (477)
Q Consensus       256 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pig~  331 (477)
                      +++|+|++|  ...+.+.++++.+.|.+ +++||+||+|..|...  ..  .....-.++++   ||||++| .|+|+||
T Consensus       151 i~nPNNPTG--~~~~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~~--~~--~~l~~~~~nlivlRTfSKa~gLAGlRlGy  223 (356)
T COG0079         151 LCNPNNPTG--TLLPREELRALLEALPE-GGLVVIDEAYIEFSPE--SS--LELLKYPPNLIVLRTFSKAFGLAGLRVGY  223 (356)
T ss_pred             EeCCCCCCC--CCCCHHHHHHHHHhCCC-CcEEEEeCchhhcCCc--hh--hhhccCCCCEEEEEecHHhhhcchhceee
Confidence            666766655  34567778888888887 9999999999998651  12  12222223244   7999999 6999999


Q ss_pred             EEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEE
Q 011777          332 VVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGME  411 (477)
Q Consensus       332 v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~  411 (477)
                      +++++++++.+.+..  ..|+.|.++++++.++++.   +++++...+....-+++|.+...+.+.....+..+.|+.++
T Consensus       224 ~ia~~~~i~~l~~vr--~p~~v~~~a~~aa~aal~~---~~~~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS~aNFvlv~  298 (356)
T COG0079         224 AIANPELIAALNKVR--PPFNVSSPALAAAIAALRD---ADYLEESVERIREERERLYAALKALGLFGVFPSQANFVLVR  298 (356)
T ss_pred             ccCCHHHHHHHHHhc--CCCCCCHHHHHHHHHHccc---HHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcEEEEE
Confidence            999999999998654  6788899999999998864   24444444444444555555444455222445568888887


Q ss_pred             EeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC---CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          412 LVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL---HGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +.        ... ...+.+.|+++||+++....   ..+++||   .+-|++|.++++++|.++++.
T Consensus       299 ~~--------~~~-~~~l~~~L~~~giivR~~~~~~~~~~~lRi---tvgt~een~~ll~AL~~~~~~  354 (356)
T COG0079         299 VP--------DAE-AAALAEALLKKGILVRDCSSVGLLPGYLRI---TVGTPEENDRLLAALREVLKG  354 (356)
T ss_pred             CC--------Ccc-HHHHHHHHHHCCEEEEeCCCCCCCCCeEEE---EeCCHHHHHHHHHHHHHHHhc
Confidence            63        222 45789999999999998743   3469999   556889999999999998764

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.94  E-value=1.7e-24  Score=220.08  Aligned_cols=350  Identities=12%  Similarity=0.053  Sum_probs=216.2

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-c-cccccCChHHHHHHHHHHhhCC---CCCC-EEEEeCChHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-H-ATTIYLHHAIADFAEALASKMP---GNLK-VVYFVNSGTEA  167 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-~-~~~~~~~~~~~~l~~~La~~~~---~~~~-~v~~~~sGseA  167 (477)
                      .|+.++|+..|..  .++ .+|.+.+++.+.+.... + +...+..+.+..+++.+.+..+   .+.+ +|++|+|++++
T Consensus        42 ~~~~~i~L~~g~p--~~~-~~~~~~~~l~~~~~~~~~~~Y~~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~a  118 (410)
T PRK06290         42 PDMELIDMGVGEP--DEM-ADESVVEVLCEEAKKPENRGYADNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPA  118 (410)
T ss_pred             CCCCeEEcCCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHH
Confidence            5667789887764  455 46788888887664321 1 1112233445556665554433   3344 79999999999


Q ss_pred             HHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc
Q 011777          168 NELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG  247 (477)
Q Consensus       168 ~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~  247 (477)
                      +..++....  .+++.|++..++|.++...+...             |...+.+|......+..|    ++++++.+.  
T Consensus       119 l~~~~~~~~--~~gd~Vlv~~P~y~~~~~~~~~~-------------g~~v~~v~~~~~~~~~~d----~~~l~~~~~--  177 (410)
T PRK06290        119 LAMLPSCFI--NPGDVTLMTVPGYPVTGTHTKYY-------------GGEVYNLPLLEENNFLPD----LDSIPKDIK--  177 (410)
T ss_pred             HHHHHHHhC--CCCCEEEEeCCCCccHHHHHHHc-------------CCEEEEEecCCCcCCcCC----HHHHHHhhc--
Confidence            999887553  35678999999998865443332             222222222111112111    356666554  


Q ss_pred             CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cc---cCCCcceeeecccc
Q 011777          248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ET---QGVIPDIVTMAKGI  323 (477)
Q Consensus       248 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~---~gv~pDivt~sK~l  323 (477)
                        .++++|++...+|++| .+.+.+.+++|.++|++||++||+||+|..|...+ ....+ ..   .+...-+-+|||.+
T Consensus       178 --~~~k~i~l~nP~NPTG-~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~-~~~s~~~~~~~~~~~I~i~SfSK~~  253 (410)
T PRK06290        178 --EKAKLLYLNYPNNPTG-AVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDG-KPLSFLSVPGAKEVGVEIHSLSKAY  253 (410)
T ss_pred             --ccceEEEEECCCCCCC-cCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCC-CCcChhcCCCccccEEEEeechhhc
Confidence              2456666664466677 55689999999999999999999999999875433 21111 11   12223344799999


Q ss_pred             c-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc-hhhHHHHHHHHHHHHHHHHHHHHHhCCCceee
Q 011777          324 G-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID-KERRQAHCADVGSHLLGRLRTLQERHDIIGDV  401 (477)
Q Consensus       324 g-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~-~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v  401 (477)
                      + .|+|+||+++++++++.+.......+.+.+.+++.++.++|+..+ .++..++++++.+++.+.|+    +++. ...
T Consensus       254 g~~GlRiG~ii~~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~----~~g~-~~~  328 (410)
T PRK06290        254 NMTGWRLAFVVGNELIVKAFATVKDNNDSGQFIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILN----EVGF-KAE  328 (410)
T ss_pred             CCchhheEeEEeCHHHHHHHHHHHhccccCCcHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHH----hCCC-eec
Confidence            7 699999999999999888765444455556678888878775311 12233444444444444443    3442 222


Q ss_pred             ecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcC-ceeeccCCCCCEEEEeCCC-CCcHHHHHHHHHHHHHHHhhC
Q 011777          402 RGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLRELG-VLVGKGGLHGNVFRIKPPM-CFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       402 ~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~G-v~v~~~~~~~~~iRi~p~~-~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      ++. |+++|+.+....... -......++.+.|+++| +++.|+..+++++||+... ..++++.++++++|++.+.++
T Consensus       329 ~p~g~f~l~v~lp~~~~~~-~~~~~~~~~~~~Ll~~~~v~~~p~~~~~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~  406 (410)
T PRK06290        329 MPGGTFYLYVKAPKGTKSG-IKFENAEEFSQYLIKEKLISTVPWDDAGHFLRFSVTFEAKDEEEEDRILEEIKRRLSDV  406 (410)
T ss_pred             CCCeeeEEEEECCCccccC-CCCCCHHHHHHHHHHhCCEEEECCccccCeEEEEEEcccccccchhHHHHHHHHHHhhc
Confidence            333 455566663211000 00012457888898886 5556765567899996542 248899999999999998764

>PRK08068 transaminase; Reviewed

Probab=99.94  E-value=1.9e-24  Score=219.12  Aligned_cols=336  Identities=11%  Similarity=0.032  Sum_probs=207.4

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc---ccccccCChHHHHHHHHHHhhCC--CCCC-EEEEeCChHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ---HATTIYLHHAIADFAEALASKMP--GNLK-VVYFVNSGTEAN  168 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~---~~~~~~~~~~~~~l~~~La~~~~--~~~~-~v~~~~sGseA~  168 (477)
                      |..+|||..+.+   -.+.+|.+.+++.+.+....   +....+..+.+.++++.+.+..+  .+.+ +|++|+|+++++
T Consensus        31 ~~~~i~l~~~~p---~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l  107 (389)
T PRK08068         31 GHDVINLGQGNP---DQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGL  107 (389)
T ss_pred             CCCeEEecCCCC---CCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHH
Confidence            445788877754   23457889999988876421   11112223445555555543333  3455 799999999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      ..++....  .+++.|++.+++|..+.......             |...+.+|......+..|    .+++++.+.   
T Consensus       108 ~~~~~~~~--~~gd~vlv~~P~y~~~~~~~~~~-------------g~~~~~i~~~~~~~~~~d----~~~l~~~~~---  165 (389)
T PRK08068        108 VELPQCLM--NPGDTILVPDPGYPDYLSGVALA-------------RAQFETMPLIAENNFLPD----YTKIPEEVA---  165 (389)
T ss_pred             HHHHHHhC--CCCCEEEEcCCCCcchHHHHHhc-------------CCEEEEeecccccCCCCC----HHHHHHhcc---
Confidence            98877543  35678999999998765543332             222223222111112111    356666554   


Q ss_pred             CCCeeEEEec-ccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc-ccccCC---Ccceeeecccc
Q 011777          249 SGKVAGFIAE-TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG-FETQGV---IPDIVTMAKGI  323 (477)
Q Consensus       249 ~~~~a~vi~e-pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~-~~~~gv---~pDivt~sK~l  323 (477)
                       +++++|++. | +|++| ..++.+.+++|.++|++||+++|+||+|..|.+.+..... ....+.   ...+-+|||.+
T Consensus       166 -~~~~~v~l~~P-~NPTG-~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~  242 (389)
T PRK08068        166 -EKAKLMYLNYP-NNPTG-AVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTF  242 (389)
T ss_pred             -ccceEEEEECC-CCCCC-CcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhcc
Confidence             234444444 6 56666 5678999999999999999999999999887665411211 122222   22344799999


Q ss_pred             c-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCcee
Q 011777          324 G-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIGD  400 (477)
Q Consensus       324 g-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~  400 (477)
                      | .|+|+||+++++++++.+.........+.+++.+.++.+++....+  +.+.+.++++.+.+.+.|++    ++. ..
T Consensus       243 g~~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~----~g~-~~  317 (389)
T PRK08068        243 NMAGWRVAFAVGNESVIEAINLLQDHLFVSLFGAIQDAAIEALLSDQSCVAELVARYESRRNAFISACRE----IGW-EV  317 (389)
T ss_pred             CCccceeEeEecCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH----CCC-cc
Confidence            8 6999999999999998886544333344455667777666642111  22344444444455444433    342 22


Q ss_pred             eeccc-eeEEEEEeeCCCCCCccHHHHHHHHHHHHH-cCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          401 VRGRG-LMVGMELVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       401 v~g~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      .++.| +++|+.+...        ....++.+.|++ +||.+.++..+    .+++||+..  .+++.+.+++++|.++
T Consensus       318 ~~~~g~~~~~v~~~~~--------~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~al~~l~~~  386 (389)
T PRK08068        318 DAPKGSFFAWMPVPKG--------YTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLL--TDEERLREAVERIGKL  386 (389)
T ss_pred             cCCCeeEEEEEECCCC--------CCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEc--CCHHHHHHHHHHHHHh
Confidence            33444 5568876321        124578888886 69999987322    368999764  5778899988888753

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.94  E-value=9.5e-25  Score=221.47  Aligned_cols=346  Identities=14%  Similarity=0.053  Sum_probs=215.2

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhC--CCCCCEEEEeCChHHHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKM--PGNLKVVYFVNSGTEANELA  171 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~--~~~~~~v~~~~sGseA~~~A  171 (477)
                      ..++||..|..  .++. ++.+.+++.+.+....  +....+..+.++.+++.+.+.+  +.+.++|++|+|+++|+..+
T Consensus        33 ~~~i~l~~~~~--~~~~-~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~  109 (391)
T PRK08361         33 ENVISLGIGEP--DFDT-PKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLA  109 (391)
T ss_pred             cCeEEcCCCCC--CCCC-CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHH
Confidence            35788877764  3443 6788998888766421  1111222334445555544332  34567899999999999998


Q ss_pred             HHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCC
Q 011777          172 MLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGK  251 (477)
Q Consensus       172 l~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~  251 (477)
                      ++...  .+++.|++.+++|.+........             |...+.+|......+..|    .+++++.++    .+
T Consensus       110 ~~~l~--~~g~~Vlv~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~i~----~~  166 (391)
T PRK08361        110 FESLL--EEGDEVIIPDPAFVCYVEDAKIA-------------EAKPIRIPLREENEFQPD----PDELLELIT----KR  166 (391)
T ss_pred             HHHhc--CCCCEEEEcCCCCcccHHHHHHc-------------CCEEEEEecCCccCCCCC----HHHHHHhcc----cc
Confidence            88653  35678999999987764332221             222222222111112212    467777665    24


Q ss_pred             eeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcc--eeeeccccc-Cccc
Q 011777          252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPD--IVTMAKGIG-NGLP  328 (477)
Q Consensus       252 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pD--ivt~sK~lg-~G~p  328 (477)
                      ++++++...+|++|. ..+.+.+++|.++|+++++++|+||+|..|...+.....+.......+  +.+|||.+| .|+|
T Consensus       167 ~~~v~i~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlR  245 (391)
T PRK08361        167 TRMIVINYPNNPTGA-TLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWR  245 (391)
T ss_pred             cEEEEEeCCCCCCCc-CcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhh
Confidence            555555544667774 557888999999999999999999999987544312222211111122  337999999 6999


Q ss_pred             eEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc-cee
Q 011777          329 LGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGR-GLM  407 (477)
Q Consensus       329 ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-g~~  407 (477)
                      +||+++++++++.+.......+++.+.+.+.++.++|+.....++.++.++..+..++.+.+..++++.+....+. |++
T Consensus       246 iG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~~~  325 (391)
T PRK08361        246 LGFVIAPEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFY  325 (391)
T ss_pred             hhhhccCHHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCEEEE
Confidence            9999999999887765443445677888888888887642222334444444444444443333334333333444 556


Q ss_pred             EEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          408 VGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       408 ~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      +|+.+....       ....++.+.|+ ++||.+.|+..+    .+++||+..  .+++++++++++|.++++++
T Consensus       326 ~~~~l~~~~-------~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~al~~l~~~l~~~  391 (391)
T PRK08361        326 VFANIDETG-------MSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYA--TSKEKLIEAMERMEKALEEL  391 (391)
T ss_pred             EEEECCCCC-------CCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHhcC
Confidence            777773210       11345666675 579999987432    368999755  57889999999999998764

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.94  E-value=1.8e-24  Score=222.09  Aligned_cols=348  Identities=16%  Similarity=0.136  Sum_probs=247.3

Q ss_pred             CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc------ccccccCChHHHHHHHHHHhh--CCCCCCEEEEeCCh
Q 011777           93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ------HATTIYLHHAIADFAEALASK--MPGNLKVVYFVNSG  164 (477)
Q Consensus        93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~------~~~~~~~~~~~~~l~~~La~~--~~~~~~~v~~~~sG  164 (477)
                      .+....+||..|.....+ .....+.+++.+.++...      +....+..+.+..+++.+...  .....++|++|+|.
T Consensus        86 ~~~~~~i~f~~g~p~~~~-fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~  164 (459)
T COG1167          86 EDDPSVIDFAGGLPDPSL-FPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGA  164 (459)
T ss_pred             cCCCceecCCCCCCCccc-CCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCH
Confidence            455788999887743311 234566666666554321      122233445566777777633  34556799999999


Q ss_pred             HHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHH
Q 011777          165 TEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHI  244 (477)
Q Consensus       165 seA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i  244 (477)
                      .+|+++++++...  +++.|++-+++|++........             |+..+++|... ...+      .++|++.+
T Consensus       165 q~al~l~~~~l~~--pGd~v~vE~PtY~~~~~~~~~~-------------g~~~~~vp~d~-~G~~------~e~le~~~  222 (459)
T COG1167         165 QQALDLLLRLLLD--PGDTVLVEDPTYPGALQALEAL-------------GARVIPVPVDE-DGID------PEALEEAL  222 (459)
T ss_pred             HHHHHHHHHHhCC--CCCEEEEcCCCcHHHHHHHHHc-------------CCcEEecCCCC-CCCC------HHHHHHHH
Confidence            9999998886644  6788999999999875554333             33344444321 1122      58888888


Q ss_pred             hccCCCCeeEEEecc-cCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCC---ccccccCCCcceeeec
Q 011777          245 DFGTSGKVAGFIAET-IQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHY---WGFETQGVIPDIVTMA  320 (477)
Q Consensus       245 ~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~---~~~~~~gv~pDivt~s  320 (477)
                      +.   .+++++++.| .||++| ..++.+--++|.++|++||++||.||.|..|.+.+...   .+.+..+.+.-+-|||
T Consensus       223 ~~---~~~k~~y~~P~~qNPtG-~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFS  298 (459)
T COG1167         223 AQ---WKPKAVYVTPTFQNPTG-VTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFS  298 (459)
T ss_pred             hh---cCCcEEEECCCCCCCCC-CccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeeh
Confidence            73   3788999999 677777 55688888999999999999999999999997775333   3344445566677999


Q ss_pred             ccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhC-C-Cc
Q 011777          321 KGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERH-D-II  398 (477)
Q Consensus       321 K~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~-~-~~  398 (477)
                      |.+..|+|+||+++++++++.+....+..+.+.+.+.+.+....|....-+++++++++..+.-++.+.+...++ + ..
T Consensus       299 K~l~PglRlG~vv~p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~  378 (459)
T COG1167         299 KTLAPGLRLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALAEYLPELA  378 (459)
T ss_pred             hhcccccceeeeeCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence            999999999999999999999988778888889999988887777632235555666666666666665555555 2 22


Q ss_pred             e-eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeec-cCC------CCCEEEEeCCCCCcHHHHHHHHHHH
Q 011777          399 G-DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGK-GGL------HGNVFRIKPPMCFTKDDADFLVDAL  470 (477)
Q Consensus       399 ~-~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~-~~~------~~~~iRi~p~~~~t~e~i~~~l~~l  470 (477)
                      . ..+..|+++|+++..        ......+.+.++++||.+.+ +..      ..+.+|++++. .+++++++++.+|
T Consensus       379 ~~~~p~gG~flwl~l~~--------~~~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~-~~~e~i~~gi~~l  449 (459)
T COG1167         379 TWTRPEGGLFLWLELPE--------GIDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSS-PSEEEIEEGIKRL  449 (459)
T ss_pred             eeecCCceEEEEEEcCC--------CCCHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCC-CCHHHHHHHHHHH
Confidence            2 233348999999843        23356889999999999988 421      24689999865 4689999999999


Q ss_pred             HHHHhh
Q 011777          471 DYSMSK  476 (477)
Q Consensus       471 ~~~l~~  476 (477)
                      .+++.+
T Consensus       450 ~~~~~~  455 (459)
T COG1167         450 AALLRE  455 (459)
T ss_pred             HHHHHH
Confidence            988864

>PRK12414 putative aminotransferase; Provisional

Probab=99.94  E-value=2.6e-24  Score=217.66  Aligned_cols=336  Identities=12%  Similarity=0.042  Sum_probs=214.4

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhc--cccccccCChHHHHHHHHHHhhCCCC--C-CEEEEeCChHHHHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL--QHATTIYLHHAIADFAEALASKMPGN--L-KVVYFVNSGTEANELA  171 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~--~~~~~~~~~~~~~~l~~~La~~~~~~--~-~~v~~~~sGseA~~~A  171 (477)
                      .+|||..|..  .++ .++.+.+++.+.+...  .|....+..+.++++++++++.++.+  . +++++|+||++|+..+
T Consensus        30 ~~i~l~~g~p--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~  106 (384)
T PRK12414         30 DALNLSQGAP--NFA-PDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAA  106 (384)
T ss_pred             CeEEcCCCCC--CCC-CCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHH
Confidence            4678877765  344 4788999988876542  12122233466778888887776543  2 4799999999999998


Q ss_pred             HHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCC
Q 011777          172 MLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGK  251 (477)
Q Consensus       172 l~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~  251 (477)
                      ++...  .+++.|++.+++|.++.......             |...+.++... ..+..|    .+++++.++    ++
T Consensus       107 ~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~v~~~~-~~~~~d----~~~l~~~l~----~~  162 (384)
T PRK12414        107 ISALV--HPGDEVIYFEPSFDSYAPIVRLQ-------------GATPVAIKLSP-EDFRVN----WDEVAAAIT----PR  162 (384)
T ss_pred             HHHhc--CCCCEEEEeCCCccchHHHHHHc-------------CCEEEEEecCc-cccccC----HHHHHhhcC----cc
Confidence            88653  36688999999997754433222             11222222110 011111    466777664    34


Q ss_pred             eeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cccCCC---cceeeeccccc-Cc
Q 011777          252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQGVI---PDIVTMAKGIG-NG  326 (477)
Q Consensus       252 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~gv~---pDivt~sK~lg-~G  326 (477)
                      +++|++...+|++|. ..+++.+++|.++|++||+++|+||+|..|...+.....+ ...+..   .-+-+|||.++ .|
T Consensus       163 ~~~v~i~~p~NPTG~-~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pG  241 (384)
T PRK12414        163 TRMIIVNTPHNPSAT-VFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTG  241 (384)
T ss_pred             cEEEEEcCCCCCCCc-CCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCcc
Confidence            566666655677774 5578889999999999999999999999876554211111 111222   22336999998 79


Q ss_pred             cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc-
Q 011777          327 LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGR-  404 (477)
Q Consensus       327 ~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-  404 (477)
                      +|+||+++++++++.+.......+++.+.+++.++.++|+.-.. .+..+.++++.+.+.+.|++    ++ +...++. 
T Consensus       242 lRiG~~v~~~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~----~g-~~~~~~~g  316 (384)
T PRK12414        242 WRVGYCLAPAELMDEIRKVHQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAG----SR-FELLPSEG  316 (384)
T ss_pred             ceEEEEecCHHHHHHHHHHHhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHh----CC-CeecCCCc
Confidence            99999999999998887655556778888999888887753111 12334444445555444443    33 2223344 


Q ss_pred             ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC------CCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777          405 GLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH------GNVFRIKPPMCFTKDDADFLVDALDY  472 (477)
Q Consensus       405 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~------~~~iRi~p~~~~t~e~i~~~l~~l~~  472 (477)
                      |.++|+.+..-     +.......+.+.|.++||.+.|+..+      .+++||+.+  .+++++++++++|.+
T Consensus       317 g~~~~~~~~~~-----~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~--~~~~~~~~~~~rl~~  383 (384)
T PRK12414        317 SFFMLARFRHF-----SDESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFS--KDDATLVEGARRLCS  383 (384)
T ss_pred             ceEEEEccccc-----CCCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEec--CCHHHHHHHHHHHhh
Confidence            45666666321     00011233446677889999997433      468999765  479999999999864

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.94  E-value=2.7e-24  Score=217.55  Aligned_cols=336  Identities=13%  Similarity=0.078  Sum_probs=212.1

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhc--cccccccCChHHHHHHHHHHhhC--CCCCCEEEEeCChHHHHHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL--QHATTIYLHHAIADFAEALASKM--PGNLKVVYFVNSGTEANELAM  172 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~--~~~~~~~~~~~~~~l~~~La~~~--~~~~~~v~~~~sGseA~~~Al  172 (477)
                      .++||..|..  .++ .++++.+++.+.+...  .|....+..+.++.+++.+.+..  +.+.++|++|+|+++|+..++
T Consensus        30 ~~i~l~~g~p--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~  106 (384)
T PRK06348         30 DIIDLSLGDP--DLI-TDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLAL  106 (384)
T ss_pred             CcEEcCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHH
Confidence            4688877754  243 3577877666544321  12212222344555666555432  345678999999999999998


Q ss_pred             HHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCe
Q 011777          173 LMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKV  252 (477)
Q Consensus       173 ~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~  252 (477)
                      ....  .+++.|++.+++|.++.......+.             ..+++|......+..|    ++++++.++    +++
T Consensus       107 ~~~~--~~gd~vlv~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~d----~~~l~~~~~----~~~  163 (384)
T PRK06348        107 QSIL--DPGDEVIIHEPYFTPYKDQIEMVGG-------------KPIILETYEEDGFQIN----VKKLEALIT----SKT  163 (384)
T ss_pred             HHhc--CCCCEEEEeCCCCcchHHHHHHcCC-------------EEEEecCCcCcCCcCC----HHHHHHhhC----cCc
Confidence            8663  3567899999999887655443321             2222221101111112    477777765    234


Q ss_pred             eEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cccC---CCcceeeeccccc-Ccc
Q 011777          253 AGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQG---VIPDIVTMAKGIG-NGL  327 (477)
Q Consensus       253 a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~g---v~pDivt~sK~lg-~G~  327 (477)
                      .+|++...+|++| ..++.+.+++|.++|++||++||+||+|.+|...+ ....+ ...+   ...-+.+|||.++ .|+
T Consensus       164 ~~v~l~~p~NPtG-~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~vi~~~SfSK~~~l~Gl  241 (384)
T PRK06348        164 KAIILNSPNNPTG-AVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYE-DFVPMATLAGMPERTITFGSFSKDFAMTGW  241 (384)
T ss_pred             cEEEEeCCCCCCC-cCCCHHHHHHHHHHHHHCCeEEEEecccccceeCC-CccchhhcCCCcCcEEEEecchhccCCccc
Confidence            4555544566677 45688999999999999999999999999885443 22121 1111   1222347999999 799


Q ss_pred             ceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc-
Q 011777          328 PLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGR-  404 (477)
Q Consensus       328 pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-  404 (477)
                      |+||+++++++++.+.......+++.+++++.++..+|+..++  +.+.+.++++.+++.+.|++    .+.+....+. 
T Consensus       242 RiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~----~~~~~~~~p~g  317 (384)
T PRK06348        242 RIGYVIAPDYIIETAKIINEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIES----IPNLSLHPPKG  317 (384)
T ss_pred             cceeeecCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc----CCCceeccCCe
Confidence            9999999999988887655556788899999999888863211  12333334444444444433    3322223333 


Q ss_pred             ceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          405 GLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       405 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      |+++|+++....       ....++.+.|+ +.||.+.|+..+    .+++|++.  ..+++++++++++|.+.
T Consensus       318 g~~~~~~~~~~~-------~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~al~~l~~~  382 (384)
T PRK06348        318 SIYAFINIKKTG-------LSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLAC--TVGIEVLEEAFNRIEKM  382 (384)
T ss_pred             eEEEEEecccCC-------CCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEe--cCCHHHHHHHHHHHHhh
Confidence            556687763210       11346777765 579999987543    36899976  46899999999998764

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.94  E-value=2.2e-24  Score=219.48  Aligned_cols=349  Identities=14%  Similarity=0.083  Sum_probs=213.0

Q ss_pred             CCEEEeecCCcccc--cCCCCCHHHHHHHHHHHhhcccccccc-CChHHHHHHHHHHhhCC-----CCCCEEEEeCChHH
Q 011777           95 GRRYLDAFAGIVTV--SCGHCHPDVLNAIFEQSKLLQHATTIY-LHHAIADFAEALASKMP-----GNLKVVYFVNSGTE  166 (477)
Q Consensus        95 G~~ylD~~~g~~~~--~lGh~~p~v~~Av~~~l~~~~~~~~~~-~~~~~~~l~~~La~~~~-----~~~~~v~~~~sGse  166 (477)
                      |+.++++..|.+..  .++ .++.+.+++.+.+.....  ..| ......+|++.+++++.     .+.++|++|+|+++
T Consensus        30 ~~~~i~l~~g~p~~~~~~~-~~~~~~~~~~~~~~~~~~--~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~  106 (401)
T TIGR01264        30 EKPMIKLSIGDPTVFGNLP-TDPEVMQAMKDSLDSGKY--NGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSH  106 (401)
T ss_pred             CCCeeecCCCCCCCcCCCC-CCHHHHHHHHHHHhccCC--CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHH
Confidence            45778888776532  244 478899999887765211  112 22233455555555543     34578999999999


Q ss_pred             HHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777          167 ANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF  246 (477)
Q Consensus       167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~  246 (477)
                      |+..++.....  +++.|++.+++|..+.......             |...+.++......++.|    .+++++.++ 
T Consensus       107 al~~~~~~l~~--~gd~v~i~~P~y~~~~~~~~~~-------------g~~v~~~~~~~~~~~~~d----~~~l~~~~~-  166 (401)
T TIGR01264       107 AIEMCIAALAN--AGQNILVPRPGFPLYETLAESM-------------GIEVKLYNLLPDKSWEID----LKQLESLID-  166 (401)
T ss_pred             HHHHHHHHhCC--CCCEEEEeCCCChhHHHHHHHc-------------CCEEEEeecCCccCCCCC----HHHHHHHhc-
Confidence            99999886643  5678999999997664333222             222222221111112212    466776664 


Q ss_pred             cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cccCC--Ccceeeecccc
Q 011777          247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQGV--IPDIVTMAKGI  323 (477)
Q Consensus       247 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~gv--~pDivt~sK~l  323 (477)
                         .+++++++...+|++|. ..+.+.+++|.++|+++|+++|+||+|.+|.+.+..+..+ .....  ..-+-+|||.+
T Consensus       167 ---~~~~~v~~~~p~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~  242 (401)
T TIGR01264       167 ---EKTAALIVNNPSNPCGS-VFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRW  242 (401)
T ss_pred             ---cCceEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccC
Confidence               23455555444666674 5688889999999999999999999999886655212221 11111  11233799997


Q ss_pred             c-CccceEEEEeCH------HHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCC
Q 011777          324 G-NGLPLGAVVTTP------EIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHD  396 (477)
Q Consensus       324 g-~G~pig~v~~~~------~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~  396 (477)
                      + .|+|+||+++++      ++++.+..... ..++.+++++.++.+.|+.. .++++++.++..+..++.+.+...+++
T Consensus       243 ~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~-~~~~l~~~~~~~~~~r~~l~~~L~~~~  320 (401)
T TIGR01264       243 LVPGWRLGWIIIHDRRGILRDIRDGLVKLSQ-RILGPCTIVQGALPSILLRT-PQEYFDGTLSVLESNAMLCYGALAAVP  320 (401)
T ss_pred             CCccceEEEEEecCcchhHHHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            7 599999999874      34444433221 24566788998888888631 233444444433333444444433443


Q ss_pred             Cce-eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC--CCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777          397 IIG-DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH--GNVFRIKPPMCFTKDDADFLVDALDY  472 (477)
Q Consensus       397 ~~~-~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l~~l~~  472 (477)
                      .+. ..+..|+++|+++....   .+......++.+.|+ ++||++.|+..+  .+++||+..  .+++++++++++|.+
T Consensus       321 ~~~~~~p~~g~f~~~~~~~~~---~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~--~~~~~l~~~l~rl~~  395 (401)
T TIGR01264       321 GLRPVMPSGAMYMMVGIEMEH---FPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLT--VPVVMMEEACSRIQE  395 (401)
T ss_pred             CCcccCCCeeeEEEEEecccc---cCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEc--CCHHHHHHHHHHHHH
Confidence            232 23446888898874210   011111345666765 789999988544  479999754  578999999999999


Q ss_pred             HHhhC
Q 011777          473 SMSKL  477 (477)
Q Consensus       473 ~l~~l  477 (477)
                      +++++
T Consensus       396 ~~~~~  400 (401)
T TIGR01264       396 FCERH  400 (401)
T ss_pred             HHhcc
Confidence            88764

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.94  E-value=4.1e-24  Score=218.09  Aligned_cols=356  Identities=12%  Similarity=0.032  Sum_probs=219.7

Q ss_pred             EEEeCCCCEEEeecCCccccc--CCCCCHHHHHHHHHHHhhc---cccccccCChHHHHHHHHHHhhC--------CCCC
Q 011777           89 YLFDENGRRYLDAFAGIVTVS--CGHCHPDVLNAIFEQSKLL---QHATTIYLHHAIADFAEALASKM--------PGNL  155 (477)
Q Consensus        89 ~~~d~dG~~ylD~~~g~~~~~--lGh~~p~v~~Av~~~l~~~---~~~~~~~~~~~~~~l~~~La~~~--------~~~~  155 (477)
                      ++.+..|+.+|||..|.....  +- .++.+.+++.+.+...   .|....+..+.++.+++.+.+.+        +.+.
T Consensus        26 ~~~~~~~~~~i~l~~g~p~~~~~~~-p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~  104 (412)
T PTZ00433         26 AKPSPSPKSIIKLSVGDPTLDGNLL-TPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKK  104 (412)
T ss_pred             hccCCCCCCeeecCCcCCCCcCCCC-CCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCCh
Confidence            345578889999998876421  22 5788999998877641   11111122344445555554421        2346


Q ss_pred             CEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHH
Q 011777          156 KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAAR  235 (477)
Q Consensus       156 ~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (477)
                      ++|++|+|+++|+..+++...  .+++.|++..++|..+.......             |...+.+|......++.|   
T Consensus       105 ~~i~it~G~~~al~~~~~~~~--~~gd~vlv~~P~y~~~~~~~~~~-------------g~~~~~i~~~~~~~~~~d---  166 (412)
T PTZ00433        105 DNVVLCSGVSHAILMALTALC--DEGDNILVPAPGFPHYETVCKAY-------------GIEMRFYNCRPEKDWEAD---  166 (412)
T ss_pred             hhEEEeCChHHHHHHHHHHhc--CCCCEEEEccCCcccHHHHHHHc-------------CCEEEEEecCccccCcCC---
Confidence            789999999999999998653  35678999999998764443222             122222221111111111   


Q ss_pred             HHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccC-CCc
Q 011777          236 YAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQG-VIP  314 (477)
Q Consensus       236 ~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~g-v~p  314 (477)
                       .+++++.++    .++++|++...+|++| ...+.+.+++|.++|++||++||+||+|.+|.+.+..+..+..+. ..+
T Consensus       167 -~~~l~~~~~----~~~~~i~~~~p~NPtG-~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~  240 (412)
T PTZ00433        167 -LDEIRRLVD----DRTKALIMTNPSNPCG-SNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVP  240 (412)
T ss_pred             -HHHHHHHhc----cCceEEEEeCCCCCCC-cccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCc
Confidence             466776665    2455555544456677 556788899999999999999999999998865542211111111 111


Q ss_pred             c--eeeeccccc-CccceEEEEe------CHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 011777          315 D--IVTMAKGIG-NGLPLGAVVT------TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLL  385 (477)
Q Consensus       315 D--ivt~sK~lg-~G~pig~v~~------~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~  385 (477)
                      -  +-+|||.++ .|+|+||+++      .+++++.+.... ..+++.+++.+.++.++|+.- .+.+.++.++..+..+
T Consensus       241 ~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~r  318 (412)
T PTZ00433        241 RVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLG-MLVCGPCSVVQAALGEALLNT-PQEHLEQIVAKLEEGA  318 (412)
T ss_pred             eEEEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHh-hccCCCChHHHHHHHHHHhcC-cHHHHHHHHHHHHHHH
Confidence            2  236999996 6999999997      245666665432 234678899999888888631 2344444444444444


Q ss_pred             HHHHHHHHhCCCceeeec-cceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC--CCEEEEeCCCCCcHH
Q 011777          386 GRLRTLQERHDIIGDVRG-RGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH--GNVFRIKPPMCFTKD  461 (477)
Q Consensus       386 ~~L~~l~~~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~--~~~iRi~p~~~~t~e  461 (477)
                      +.+.+...++..+..+.+ .|+++|+.+......   ......++++.|+ ++||.+.++..+  .+++|++..  ..++
T Consensus       319 ~~l~~~L~~~~~~~~~~p~gg~f~~~~l~~~~~~---~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e  393 (412)
T PTZ00433        319 MVLYNHIGECIGLSPTMPRGSMFLMSRLDLEKFR---DIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTIS--RPVE  393 (412)
T ss_pred             HHHHHHHhcCCCCcccCCCeeEEEEEEechhhcC---CCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEec--CCHH
Confidence            444444434322322333 477788877321000   0001346777877 579999998644  478999764  4688


Q ss_pred             HHHHHHHHHHHHHhh
Q 011777          462 DADFLVDALDYSMSK  476 (477)
Q Consensus       462 ~i~~~l~~l~~~l~~  476 (477)
                      ++++++++|.++++.
T Consensus       394 ~l~~al~~l~~~~~~  408 (412)
T PTZ00433        394 VLREAVERIKAFCER  408 (412)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998764

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.94  E-value=3.2e-24  Score=214.45  Aligned_cols=324  Identities=17%  Similarity=0.126  Sum_probs=213.4

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMA  175 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~a  175 (477)
                      ..++||..+.  +.+|. ++.+.+++.+.+....    .|+.+...+|++.++++++.+.++|++|+|+++++..+++..
T Consensus        19 ~~~~~l~~~~--~~~~~-p~~~~~a~~~~~~~~~----~Y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~   91 (354)
T PRK06358         19 NMILDFSANI--NPLGV-PESLKQAITENLDKLV----EYPDPDYLELRKRIASFEQLDLENVILGNGATELIFNIVKVT   91 (354)
T ss_pred             cceEEecCCC--CCCCC-CHHHHHHHHHHHHhhh----cCCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh
Confidence            3578987755  34554 7899999988765432    244444678999999998878889999999999999988853


Q ss_pred             HhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeE-
Q 011777          176 RLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAG-  254 (477)
Q Consensus       176 r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~-  254 (477)
                          ..+.|++.+++|+.+.......             |...+.++......+.-|     +++.+.+.   . ++++ 
T Consensus        92 ----~~~~v~i~~P~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d-----~~~~~~~~---~-~~~~v  145 (354)
T PRK06358         92 ----KPKKVLILAPTFAEYERALKAF-------------DAEIEYAELTEETNFAAN-----EIVLEEIK---E-EIDLV  145 (354)
T ss_pred             ----CCCcEEEecCChHHHHHHHHHc-------------CCeeEEEeCccccCCCcc-----HHHHHhhc---c-CCCEE
Confidence                2357999999998775443222             222222221111112211     12222232   2 3444 


Q ss_pred             EEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc-ccccCCCcc---eeeeccccc-Cccce
Q 011777          255 FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG-FETQGVIPD---IVTMAKGIG-NGLPL  329 (477)
Q Consensus       255 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~-~~~~gv~pD---ivt~sK~lg-~G~pi  329 (477)
                      ++++| +|++| ..++++.+++|.++|++||+++|+||+|..|...+ .... +...+..+.   +-+|||.+| .|+|+
T Consensus       146 ~~~~P-~NPtG-~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~-~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~Ri  222 (354)
T PRK06358        146 FLCNP-NNPTG-QLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEEN-ETISMINYLENFKNLIIIRAFTKFFAIPGLRL  222 (354)
T ss_pred             EEeCC-CCCCC-CccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCc-cchhHHHhccCCCCEEEEEechhhccCcchhh
Confidence            56677 56666 45688999999999999999999999999886554 2111 111121222   347999999 79999


Q ss_pred             EEEEeC-HHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeE
Q 011777          330 GAVVTT-PEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMV  408 (477)
Q Consensus       330 g~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~  408 (477)
                      ||++++ +++++.+....  ..++.+.+++.++.++|+   ++++.++..+..+..++.+.+...+++.+...++.|.++
T Consensus       223 G~lv~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~f~  297 (354)
T PRK06358        223 GYGLTSNKNLAEKLLQMR--EPWSINTFADLAGQTLLD---DKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKPSVNFI  297 (354)
T ss_pred             eeeecCCHHHHHHHHHhC--CCCcchHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCcceEE
Confidence            999985 67777776543  356778888888888875   223333333333333344443333443343345667888


Q ss_pred             EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          409 GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       409 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      ++.+.        .   ..++.+.|+++||.+.++..+    .+++||+   ..++++.++++++|++++
T Consensus       298 ~~~~~--------~---~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls---~~~~~~~~~l~~~l~~~~  353 (354)
T PRK06358        298 FFKLE--------K---PIDLRKELLKKGILIRSCSNYRGLDENYYRVA---VKSREDNKKLLKALEVIL  353 (354)
T ss_pred             EEEcC--------c---hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---eCCHHHHHHHHHHHHHHh
Confidence            88762        1   246888899999999998543    3689995   457899999999999876

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.94  E-value=1.5e-24  Score=220.64  Aligned_cols=330  Identities=16%  Similarity=0.108  Sum_probs=210.1

Q ss_pred             CCcccccCCCCCHHHHHHHHHHHhhc--cccc-----cccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHH
Q 011777          103 AGIVTVSCGHCHPDVLNAIFEQSKLL--QHAT-----TIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMA  175 (477)
Q Consensus       103 ~g~~~~~lGh~~p~v~~Av~~~l~~~--~~~~-----~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~a  175 (477)
                      .+.+....||++|++++++.++. ..  .+..     ..+..+.+.+++++++++++.+.+.+.++++|+++.+.+++++
T Consensus        23 ~~l~~g~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~  101 (398)
T cd00613          23 SFLGSGTYKHNPPAVIKRNILEN-EFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAA  101 (398)
T ss_pred             ccccccccCCcCcHHHHHHhccc-cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHH
Confidence            34455567999999999987776 32  1111     1223456788999999998766557888888887888888877


Q ss_pred             HhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEE
Q 011777          176 RLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGF  255 (477)
Q Consensus       176 r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~v  255 (477)
                      +...++.+.|++...+|+.+...+...+...        +.....++.......+      .+++++.+.    +++++|
T Consensus       102 ~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~--------g~~~~~v~~~~~~~~d------~~~l~~~i~----~~t~~v  163 (398)
T cd00613         102 IRAYHKRNKVLVPDSAHPTNPAVARTRGEPL--------GIEVVEVPSDEGGTVD------LEALKEEVS----EEVAAL  163 (398)
T ss_pred             HhcccCCCEEEEcCccCcchHHHHHHhcccC--------CcEEEEeccCCCCCcC------HHHHHHhcC----CCeEEE
Confidence            6543233445556678887766665543210        1222222211111111      467777764    468889


Q ss_pred             EecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccc---c-Cccce
Q 011777          256 IAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGI---G-NGLPL  329 (477)
Q Consensus       256 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~l---g-~G~pi  329 (477)
                      ++++++ ++|.+   .++|++|.++|++||+++|+|++|......+    ....+  .+|+++  ++|.+   | ||+++
T Consensus       164 iv~~~~-~~G~~---~~~l~~i~~la~~~g~~livD~~~~~~~~~~----~~~~~--~~d~~~~s~~K~~~p~g~Ggp~~  233 (398)
T cd00613         164 MVQYPN-TLGVF---EDLIKEIADIAHSAGALVYVDGDNLNLTGLK----PPGEY--GADIVVGNLQKTGVPHGGGGPGA  233 (398)
T ss_pred             EEECCC-CCcee---cchHHHHHHHHHhcCCEEEEEeccccccCCC----ChHHc--CCCEEEeeccccCCCCCCCCCce
Confidence            998875 56766   3568999999999999999999876321111    11122  367765  56876   2 35889


Q ss_pred             EEEEeCHHHHHhhccc-----------------------------ccccCCCCcHHHHHHHHHHHHhhchh---hHHHHH
Q 011777          330 GAVVTTPEIANVMAQK-----------------------------IQFNTFGGNPVCSAGGLAVLRVIDKE---RRQAHC  377 (477)
Q Consensus       330 g~v~~~~~~~~~~~~~-----------------------------~~~~t~~~~~~~~aaa~a~l~~l~~~---~~~~~~  377 (477)
                      |+++.++++++.+...                             ...++++++++.++++.++++.+.++   +..++.
T Consensus       234 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~  313 (398)
T cd00613         234 GFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERA  313 (398)
T ss_pred             eEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            9999998888765221                             11235666777877777777766543   356788


Q ss_pred             HHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-CCCCEEEEeCCC
Q 011777          378 ADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-LHGNVFRIKPPM  456 (477)
Q Consensus       378 ~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~~iRi~p~~  456 (477)
                      ++++++++++|+++.... ....  .....+++.+..      .......++.+.|+++||++.... ...+.+|++|++
T Consensus       314 ~~~~~~l~~~L~~~~~~~-~~~~--~~~~~v~~~~~~------~~~~~~~~~~~~L~~~gi~~~~~~~~~~~~lRis~~~  384 (398)
T cd00613         314 HLNANYLAKRLKEVGGVL-PFNG--PFFHEFVLRLPP------LYGIRAEDLAKALIDGGFHAPTMYLPVDGTLMIEPTE  384 (398)
T ss_pred             HHHHHHHHHHHHhcCCcc-cCCC--CeeEEEEEEcCC------cchHHHHHHHHhhhhcCccccccccCCCCeEEEEcCC
Confidence            888888888887752111 0110  111122333311      002345678899999999875421 135789999999


Q ss_pred             CCcHHHHHHHHHHH
Q 011777          457 CFTKDDADFLVDAL  470 (477)
Q Consensus       457 ~~t~e~i~~~l~~l  470 (477)
                      .+|++|||++++.|
T Consensus       385 ~~t~edid~~~~~L  398 (398)
T cd00613         385 TETKEELDALLEAL  398 (398)
T ss_pred             CCCHHHHHHHHHhC
Confidence            99999999999864

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.94  E-value=3.4e-24  Score=216.86  Aligned_cols=338  Identities=12%  Similarity=0.043  Sum_probs=209.8

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc---ccccccCChHHHHHHHHHHhhCCC--CCC-EEEEeCChHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ---HATTIYLHHAIADFAEALASKMPG--NLK-VVYFVNSGTEAN  168 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~---~~~~~~~~~~~~~l~~~La~~~~~--~~~-~v~~~~sGseA~  168 (477)
                      |..++||..|..  .++ .++.+.+++.+.+....   +....+..+.+..+++.+.+..+.  +.+ .|++|+|+++++
T Consensus        28 ~~~~~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l  104 (383)
T TIGR03540        28 GVDVISLGIGDP--DLP-TPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGI  104 (383)
T ss_pred             CCCeEEeCCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHH
Confidence            556788887764  344 36789999988765321   111112234455555555544322  334 689999999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      ..+++...  .+++.|++.+++|.++.......             |...+.+|......+..|    ++++++.+.   
T Consensus       105 ~~~~~~~~--~~gd~vlv~~P~y~~~~~~~~~~-------------G~~v~~v~~~~~~g~~~d----~~~l~~~~~---  162 (383)
T TIGR03540       105 AHIPLAFV--NPGDIVLVPDPGYPVYRIGTLFA-------------GGEPYEMPLKEENGFLPD----FDAIPEDIA---  162 (383)
T ss_pred             HHHHHHhC--CCCCEEEEeCCCCcchHHHHHhc-------------CCEEEEEecCcccCCccC----HHHHHhhcc---
Confidence            99988653  36678999999998875544333             222222222111112111    356666554   


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc---cc-cCCCcceeeeccccc
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF---ET-QGVIPDIVTMAKGIG  324 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~---~~-~gv~pDivt~sK~lg  324 (477)
                       .++++|++...+|++| ..++.+.+++|.++|++||++||+||+|..+.+.+.....+   +. .+....+.+|||.+|
T Consensus       163 -~~~~~v~i~~P~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g  240 (383)
T TIGR03540       163 -KKAKLMFINYPNNPTG-AVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYN  240 (383)
T ss_pred             -ccceEEEEeCCCCCcC-ccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccC
Confidence             2455666654466677 56689999999999999999999999999775543111111   11 122344558999998


Q ss_pred             -CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeec
Q 011777          325 -NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRG  403 (477)
Q Consensus       325 -~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g  403 (477)
                       .|+|+||+++++++++.+.........+.+.+.+.++.++|+..  +++.+..++..+..++.+.+..++++. ....+
T Consensus       241 ~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~L~~~~~-~~~~~  317 (383)
T TIGR03540       241 MTGWRIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGP--QDVVKEIRKIYQRRRDLLLEALKKIGI-DVEKP  317 (383)
T ss_pred             CccceeeEEeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhCCC-EecCC
Confidence             69999999999999888765433334455667788887777532  333333333333334444344344442 22233


Q ss_pred             -cceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777          404 -RGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDY  472 (477)
Q Consensus       404 -~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~  472 (477)
                       .|+++|+.+...        ....++.+.|+ ++||.+.++..+    .+++||+.+  .+++++++++++|.+
T Consensus       318 ~~~~~~~~~l~~~--------~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~--~~~~~l~~~l~~l~~  382 (383)
T TIGR03540       318 KATFYVWVPVPEG--------YTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLT--VPDERLEEAVARIKK  382 (383)
T ss_pred             CcceEEEEECCCC--------CCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEec--CCHHHHHHHHHHHhh
Confidence             356678876321        12456777765 689999987432    368999764  678899999988764

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PLN02187 rooty/superroot1

Probab=99.94  E-value=4.6e-24  Score=219.79  Aligned_cols=355  Identities=13%  Similarity=0.070  Sum_probs=212.2

Q ss_pred             CCCCEEEeecCCccccc-CCCCCHHHHHHHHHHHhhcc---ccccccCChHHHHHHHHHHhhC--CCCCCEEEEeCChHH
Q 011777           93 ENGRRYLDAFAGIVTVS-CGHCHPDVLNAIFEQSKLLQ---HATTIYLHHAIADFAEALASKM--PGNLKVVYFVNSGTE  166 (477)
Q Consensus        93 ~dG~~ylD~~~g~~~~~-lGh~~p~v~~Av~~~l~~~~---~~~~~~~~~~~~~l~~~La~~~--~~~~~~v~~~~sGse  166 (477)
                      .+++.+|++..|..... .=-.++++.+++.+.++...   +....+..+.+..+++.+.+..  +.+.++|++|+|+++
T Consensus        63 ~~~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~  142 (462)
T PLN02187         63 DVNKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQ  142 (462)
T ss_pred             CCCCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHH
Confidence            44678888877743210 00135688999888776432   1111112234444555554433  245679999999999


Q ss_pred             HHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777          167 ANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF  246 (477)
Q Consensus       167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~  246 (477)
                      |+..+++...  .+++.|++.+++|.++...+...             |.....++......+..|    +++++++++ 
T Consensus       143 al~~~~~~l~--~pGd~Vlv~~P~y~~y~~~~~~~-------------g~~~~~~~l~~~~~~~~d----~~~l~~~~~-  202 (462)
T PLN02187        143 GIEIVFESLA--RPNANILLPRPGFPHYDARAAYS-------------GLEVRKFDLLPEKEWEID----LEGIEAIAD-  202 (462)
T ss_pred             HHHHHHHHhc--CCCCEEEEeCCCCccHHHHHHHc-------------CCEEEEEeCccccCCccC----HHHHHHhcC-
Confidence            9999998653  36688999999999864433222             112222111111112222    467777664 


Q ss_pred             cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc-CCCc--ceeeecccc
Q 011777          247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ-GVIP--DIVTMAKGI  323 (477)
Q Consensus       247 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~-gv~p--Divt~sK~l  323 (477)
                        .+..+++++.|. |++| .+.+.+.+++|.++|++||++||+||+|..|.+.+..+..+..+ +..+  -+-+|||.+
T Consensus       203 --~~~~~v~i~nP~-NPTG-~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f  278 (462)
T PLN02187        203 --ENTVAMVVINPN-NPCG-NVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGW  278 (462)
T ss_pred             --CCcEEEEEeCCC-CCCC-CccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhc
Confidence              345567777775 5556 56689999999999999999999999999876555222122211 1111  223699998


Q ss_pred             c-CccceEEEEeC-H-HH---HHhhcccccccCC--CCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhC
Q 011777          324 G-NGLPLGAVVTT-P-EI---ANVMAQKIQFNTF--GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERH  395 (477)
Q Consensus       324 g-~G~pig~v~~~-~-~~---~~~~~~~~~~~t~--~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~  395 (477)
                      + .|+|+||++++ + .+   ++.+........+  +.+.+.+.++.++|+.. .+++.++.++..+.-++.+.+...++
T Consensus       279 ~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~-~~~~l~~~~~~l~~~r~~l~~~L~~~  357 (462)
T PLN02187        279 VVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKA-DKNFFAKKNKILKHNVDLVCDRLKDI  357 (462)
T ss_pred             CCccceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            8 59999999983 3 22   2334332222223  44788999998888631 23344444433333334443433334


Q ss_pred             CCcee--eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC--CCEEEEeCCCCCcHHHHHHHHHHHH
Q 011777          396 DIIGD--VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH--GNVFRIKPPMCFTKDDADFLVDALD  471 (477)
Q Consensus       396 ~~~~~--v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l~~l~  471 (477)
                      +....  .+..|+++++.+......  ........+.+.+.++||++.||..+  .++|||+.  ...++++++++++|.
T Consensus       358 ~~~~~~~~P~gg~fl~~~l~~~~~~--~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~--~~~~e~l~~al~rL~  433 (462)
T PLN02187        358 PCVVCPKKPESCTYLLTKLELSLMD--NIKDDIDFCVKLAREENLVFLPGDALGLKNWMRITI--GVEAHMLEDALERLK  433 (462)
T ss_pred             CCCcCCCCCCEeEEEEeecChhhCC--CCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEEe--CCCHHHHHHHHHHHH
Confidence            43321  233467778776321000  00011233456668899999998544  47999965  457899999999999


Q ss_pred             HHHhh
Q 011777          472 YSMSK  476 (477)
Q Consensus       472 ~~l~~  476 (477)
                      +++++
T Consensus       434 ~~l~~  438 (462)
T PLN02187        434 GFCTR  438 (462)
T ss_pred             HHHHH
Confidence            98854

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.94  E-value=4e-24  Score=217.08  Aligned_cols=337  Identities=12%  Similarity=0.015  Sum_probs=208.9

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhc---cccccccCChHHHHHHHHHHhhCC--CCCC-EEEEeCChHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL---QHATTIYLHHAIADFAEALASKMP--GNLK-VVYFVNSGTEAN  168 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~---~~~~~~~~~~~~~~l~~~La~~~~--~~~~-~v~~~~sGseA~  168 (477)
                      |+.++||..|.+   .+..++++.+++.+.+...   .+....+..+.+.++++.+.+..+  .+.+ .+++|+|+++|+
T Consensus        34 g~~~i~l~~g~p---~~~~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al  110 (394)
T PRK05942         34 GLDLIDLGMGNP---DGAAPQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGL  110 (394)
T ss_pred             CCCeEEcCCCCC---CCCCCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHH
Confidence            556789887643   3334667888887776532   121112223445566666655433  3445 588999999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      ..++....  .+++.|++.+++|.+........             |...+++|......+..|    .+++++.+.   
T Consensus       111 ~~~~~~~~--~~gd~Vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~~~---  168 (394)
T PRK05942        111 THLALAYV--NPGDVVLVPSPAYPAHFRGPLIA-------------GAQIYPIILKPENDWLID----LSSIPEEVA---  168 (394)
T ss_pred             HHHHHHhC--CCCCEEEEcCCCCcchHHHHHHc-------------CCEEEEeecCCccCCccC----HHHHHHhcc---
Confidence            99887553  36788999999998765443222             222222222111112212    366766664   


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc---cc-ccCCCcceeeeccccc
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG---FE-TQGVIPDIVTMAKGIG  324 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~---~~-~~gv~pDivt~sK~lg  324 (477)
                       +++++|++...+|++| ..++++.+++|.++|++||+++|+||+|..|...+....+   +. ..+....+-+|||.++
T Consensus       169 -~~~k~i~l~~P~NPtG-~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~  246 (394)
T PRK05942        169 -QQAKILYFNYPSNPTT-ATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYN  246 (394)
T ss_pred             -ccceEEEEcCCCCCCC-CcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccC
Confidence             3556666664466667 5568899999999999999999999999887654421111   11 1222344567999997


Q ss_pred             -CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceee
Q 011777          325 -NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDV  401 (477)
Q Consensus       325 -~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v  401 (477)
                       .|+|+||+++++++++.+........++.+.+++.++.++|+..++  ++..++++++.+++.+.|++    ++. ...
T Consensus       247 ~~GlRiG~i~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~----~~~-~~~  321 (394)
T PRK05942        247 MAGWRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGLGE----LGW-NIP  321 (394)
T ss_pred             ChhhheeeeecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH----CCC-eec
Confidence             6999999999999999887654444566777888888888864321  22334444444444444433    332 222


Q ss_pred             ec-cceeEEEEEeeCCCCCCccHHHHHHHHH-HHHHcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          402 RG-RGLMVGMELVTDRKEKTPAKAETAVLFE-KLRELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       402 ~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~-~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      ++ .|+++|+.+...        ....++.. .+.++||.+.++..+    .+++|++++  .+.+.+.+++++|.++
T Consensus       322 ~~~~~~f~~~~~~~~--------~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~--~~~~~l~~~l~~l~~~  389 (394)
T PRK05942        322 PTKATMYLWVPCPVG--------MGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLI--ADCDRLGEALDRLKQA  389 (394)
T ss_pred             CCCeeeEEEEECCCC--------CCHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEec--CCHHHHHHHHHHHHHh
Confidence            33 355778876321        01234444 456789999887432    469999865  4567777777777653

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=3.4e-24  Score=215.98  Aligned_cols=336  Identities=14%  Similarity=0.095  Sum_probs=214.6

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCC--------CCCCEEEEeCChHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMP--------GNLKVVYFVNSGTEA  167 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~--------~~~~~v~~~~sGseA  167 (477)
                      ..++|+..|..  +++ .+|.+.+++.+.+..... ...|+.....+|++.+++++.        .+.++|++|+|++++
T Consensus        28 ~~~~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~-~~~Y~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~a  103 (374)
T PRK02610         28 IQLDRLDTNEF--PYD-LPPDLKQKLAWLYQQGIE-SNRYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDEL  103 (374)
T ss_pred             cceeEecCCCC--CCC-CCHHHHHHHHHHHhhccc-ccCCCCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHH
Confidence            46888887764  454 478999999987665211 122333344566666666654        456789999999999


Q ss_pred             HHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc
Q 011777          168 NELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG  247 (477)
Q Consensus       168 ~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~  247 (477)
                      +..++.... ..+.+.|++.+++|.++...+...+             ...+.++.. ...++.|    .++++++++..
T Consensus       104 l~~~~~~~~-~~g~~~Vlv~~P~y~~~~~~~~~~g-------------~~~~~~~~~-~~~~~~d----~~~l~~~~~~~  164 (374)
T PRK02610        104 IRSLLIATC-LGGEGSILVAEPTFSMYGILAQTLG-------------IPVVRVGRD-PETFEID----LAAAQSAIEQT  164 (374)
T ss_pred             HHHHHHHHc-CCCCCeEEEcCCChHHHHHHHHHcC-------------CEEEEecCC-cccCCCC----HHHHHHHHHhh
Confidence            987776432 2343479999999987755443332             222222211 0112222    47777777521


Q ss_pred             CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeeccccc-Cc
Q 011777          248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIG-NG  326 (477)
Q Consensus       248 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg-~G  326 (477)
                      ...++++|++.+.+|++|. ..+++.+++|.++|  ++++||+||+|..|.... ............-+-+|||.+| .|
T Consensus       165 ~~~~~k~i~l~~P~NPTG~-~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~-~~~~~~~~~~~ivi~SfSK~~g~~G  240 (374)
T PRK02610        165 QNPPVRVVFVVHPNSPTGN-PLTAAELEWLRSLP--EDILVVIDEAYFEFSQTT-LVGELAQHPNWVILRTFSKAFRLAA  240 (374)
T ss_pred             cCCCceEEEEeCCCCCCCC-CCCHHHHHHHHhcc--CCcEEEEeccccccCccc-hHHHHhcCCCEEEEEecchhccCcc
Confidence            1245667766566777884 45777889998887  499999999999884321 1111111111112447999997 69


Q ss_pred             cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccce
Q 011777          327 LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGL  406 (477)
Q Consensus       327 ~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~  406 (477)
                      +|+||+++++++++.+....  ..++.+.+++.++.++++.  .+.+.+++++..+. ++.+.+...+++.+...+..|.
T Consensus       241 lRiG~~v~~~~l~~~l~~~~--~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~-r~~l~~~L~~~~~~~~~p~~g~  315 (374)
T PRK02610        241 HRVGYAIGHPELIAVLEKVR--LPYNLPSFSQLAAQLALEH--RQELLAAIPEILQE-RDRLYQALQELPQLRVWPSAAN  315 (374)
T ss_pred             cceeeeecCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHH-HHHHHHHHHhCCCcEeCCCcce
Confidence            99999999999998887543  3466788888888887763  23444444444333 3344444344433333355678


Q ss_pred             eEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          407 MVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       407 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      ++|+++...        .....+.+.|+++||.+.+.   .+++||+..   +++++++++++|.+++.++
T Consensus       316 f~~~~l~~~--------~~~~~~~~~l~~~gi~v~~~---~~~lRls~~---~~~~~~~~l~~l~~~l~~~  372 (374)
T PRK02610        316 FLYLRLSQD--------AALAALHQALKAQGTLVRHT---GGGLRITIG---TPEENQRTLERLQAALTQL  372 (374)
T ss_pred             EEEEeCCCC--------CCHHHHHHHHHHCCEEEEeC---CCeEEEeCC---CHHHHHHHHHHHHHHHhhc
Confidence            888876321        12456788899999999764   468999643   4678999999999988754

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.94  E-value=2e-24  Score=215.62  Aligned_cols=320  Identities=18%  Similarity=0.180  Sum_probs=208.8

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMA  175 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~a  175 (477)
                      ...|||..|..  .++ .+|++++++.+++....    .|..+...++++.++++++.+.+++++++|+++++..+++..
T Consensus        19 ~~~i~l~~~~~--~~~-~~~~~~~a~~~~~~~~~----~y~~~~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l   91 (346)
T TIGR01141        19 KEVIKLNSNEN--PFG-PPPKAKEALRAEADKLH----RYPDPDPAELKQALADYYGVDPEQILLGNGSDEIIELLIRAF   91 (346)
T ss_pred             CceEEccCCCC--CCC-CCHHHHHHHHHhHHHhh----cCCCCCHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHh
Confidence            47999987764  455 47899999998875321    233344578889999988766678999999999998888765


Q ss_pred             HhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEE
Q 011777          176 RLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGF  255 (477)
Q Consensus       176 r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~v  255 (477)
                      .  .+++.|++.+++|..+.......             |...+.++....  +..|    .+++++.+.    +++++|
T Consensus        92 ~--~~gd~v~~~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~--~~~d----~~~l~~~~~----~~~~~v  146 (346)
T TIGR01141        92 L--EPGDAVLVPPPTYSMYEISAKIH-------------GAEVVKVPLDED--GQLD----LEDILVAID----DKPKLV  146 (346)
T ss_pred             c--CCCCEEEEcCCCHHHHHHHHHHc-------------CCeEEEeccCCC--CCCC----HHHHHHhcC----CCCCEE
Confidence            3  35678999998885432211111             222222221111  1111    466666543    356777


Q ss_pred             EecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee---eeccccc-CccceEE
Q 011777          256 IAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV---TMAKGIG-NGLPLGA  331 (477)
Q Consensus       256 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pig~  331 (477)
                      +++..++++|.+.+ .+.++++.+.|+ +|+++|+||+|.+|...+ ...  +.....++++   ++||.++ .|+|+||
T Consensus       147 ~l~~p~NptG~~~~-~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~-~~~--~~~~~~~~~i~~~S~sK~~g~~G~r~G~  221 (346)
T TIGR01141       147 FLCSPNNPTGNLLS-RSDIEAVLERTP-EDALVVVDEAYGEFSGEP-STL--PLLAEYPNLIVLRTLSKAFGLAGLRIGY  221 (346)
T ss_pred             EEeCCCCCCCCCCC-HHHHHHHHHhCC-CCcEEEEECchhhhcCCc-cHH--HHHhhCCCEEEEehhhHhhhchhhhcee
Confidence            77766777886665 444444444443 499999999999775432 222  1111223433   6899997 5899999


Q ss_pred             EEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc-hhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEE
Q 011777          332 VVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID-KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM  410 (477)
Q Consensus       332 v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~-~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i  410 (477)
                      +++++++.+.+....  .+++.+++++.++.+.++... -++..++++++.+++++.|++    ++.+...+..|.++++
T Consensus       222 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~g~~~~~  295 (346)
T TIGR01141       222 AIANAEIIDALNKVR--APFNLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKK----LPGLEVYPSDANFVLI  295 (346)
T ss_pred             eecCHHHHHHHHhcc--CCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh----cCCCEECCCcCCEEEE
Confidence            999999988887543  356778899998888876432 123344445555555555443    3323333445778888


Q ss_pred             EEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC---CCEEEEeCCCCCcHHHHHHHHHHHH
Q 011777          411 ELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH---GNVFRIKPPMCFTKDDADFLVDALD  471 (477)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---~~~iRi~p~~~~t~e~i~~~l~~l~  471 (477)
                      ++..          ...++.+.|.++||.+.++..+   .+++|++++   +++|++++++.|+
T Consensus       296 ~~~~----------~~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~---~~~~i~~~~~~l~  346 (346)
T TIGR01141       296 RFPR----------DADALFEALLEKGIIVRDLNSYPGLPNCLRITVG---TREENDRFLAALR  346 (346)
T ss_pred             ecCC----------CHHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC---CHHHHHHHHHHhC
Confidence            7631          2457888999999999987544   588999754   7899999998763

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.94  E-value=6.7e-24  Score=215.90  Aligned_cols=352  Identities=11%  Similarity=0.044  Sum_probs=219.3

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhCCC--CCCEEEEeCChHHHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKMPG--NLKVVYFVNSGTEANEL  170 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~~~--~~~~v~~~~sGseA~~~  170 (477)
                      |...+|+..|.+.  ++ .+|.+.+++.+.+....  +....+..+.+.++++.+.+..+.  ..++|++|+|+++|+..
T Consensus        32 ~~~~i~l~~g~p~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~  108 (402)
T PRK06107         32 GRSIVDLTVGEPD--FD-TPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFL  108 (402)
T ss_pred             cCCEEEcCCCCCC--CC-CCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHH
Confidence            4457788777753  33 37889999988876422  222223446677788888776543  45689999999999999


Q ss_pred             HHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCC
Q 011777          171 AMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG  250 (477)
Q Consensus       171 Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~  250 (477)
                      +++..  ..+++.|++.+++|.++........+             ..+.++......+..+    .+++++.+.   ++
T Consensus       109 ~~~~~--~~~gd~vl~~~p~y~~y~~~~~~~~~-------------~~~~v~~~~~~~~~~~----~~~l~~~~~---~~  166 (402)
T PRK06107        109 ALMAT--LEAGDEVIIPAPYWVSYPDMVLANDG-------------TPVIVACPEEQGFKLT----PEALEAAIT---PR  166 (402)
T ss_pred             HHHHh--cCCCCEEEEecCCCcCHHHHHHHcCC-------------EEEEecCCcccCCCCC----HHHHHhhcC---cC
Confidence            98743  33567888999988776443322211             1111111111112212    366777664   22


Q ss_pred             CeeEEEecccCCCCCeeeCCchhHHHHHHHHHHh-CcEEEEcCcccCccCCCCCCcccc-c-cCCCccee---eeccccc
Q 011777          251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKA-GGVCIADEVQTGFGRTGSHYWGFE-T-QGVIPDIV---TMAKGIG  324 (477)
Q Consensus       251 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~-gillI~DEv~~gfgr~G~~~~~~~-~-~gv~pDiv---t~sK~lg  324 (477)
                      ..+++++.| +|++| ..++.+.+++|.++|++| |+++|+||+|..+.+.+..+..+. . .+....++   +|||.++
T Consensus       167 ~~~v~l~~p-~NPtG-~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~  244 (402)
T PRK06107        167 TRWLILNAP-SNPTG-AVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYA  244 (402)
T ss_pred             ceEEEEECC-CCCCC-cCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhc
Confidence            334445545 55666 566888899999999998 999999999988755441111111 1 12222333   5799998


Q ss_pred             -CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeec
Q 011777          325 -NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRG  403 (477)
Q Consensus       325 -~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g  403 (477)
                       .|+|+||+++++++++.+.......+++.+.+.+.++..+|+.  .+.+.++.++..+..++.+.+..++++.+....+
T Consensus       245 ~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p  322 (402)
T PRK06107        245 MTGWRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNG--DQSFVTESVAVYKQRRDYALALLNAIPGLSCLVP  322 (402)
T ss_pred             CcccceeeeecCHHHHHHHHHHHHhcccCCChHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCC
Confidence             7999999999999999887765556677889999999888852  2334333333333333333333333433333333


Q ss_pred             -cceeEEEEEeeCCCCCCccHH---HHHHHH-HHHHHcCceeeccCCC--CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          404 -RGLMVGMELVTDRKEKTPAKA---ETAVLF-EKLRELGVLVGKGGLH--GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       404 -~g~~~~i~~~~~~~~~~~~~~---~~~~~~-~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                       .|+++|+.+..-.....|...   ....+. +.+.++||.+.|+..+  .+++||+..  .+++++++++++|.+.+++
T Consensus       323 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~--~~~e~l~~~l~~l~~~l~~  400 (402)
T PRK06107        323 DGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIA--TSLETLEEACARIERAVAA  400 (402)
T ss_pred             CcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeC--CCHHHHHHHHHHHHHHHHh
Confidence             356667776311000001110   123444 4456789999998655  368999755  5799999999999999876


Q ss_pred             C
Q 011777          477 L  477 (477)
Q Consensus       477 l  477 (477)
                      +
T Consensus       401 ~  401 (402)
T PRK06107        401 L  401 (402)
T ss_pred             c
Confidence            4

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.94  E-value=7.2e-24  Score=214.74  Aligned_cols=337  Identities=15%  Similarity=0.123  Sum_probs=217.8

Q ss_pred             EEeecCCcccccCCCCCHHHHHHHHHHHhhcc---ccccccCChHHHHHHHHHHhhCCCC---CCEEEEeCChHHHHHHH
Q 011777           98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ---HATTIYLHHAIADFAEALASKMPGN---LKVVYFVNSGTEANELA  171 (477)
Q Consensus        98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~---~~~~~~~~~~~~~l~~~La~~~~~~---~~~v~~~~sGseA~~~A  171 (477)
                      ++|+..|...  +. .++.+.+|+.+.+....   +....+..+.+..+++.+++.++.+   .+.+++++|+++++..+
T Consensus        29 ~~~l~~g~~~--~~-~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~  105 (389)
T PRK05957         29 TISLGQGVVS--YP-PPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNA  105 (389)
T ss_pred             eEEccCCCCC--CC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHH
Confidence            5676666543  33 57889999988765432   2222334466788888888877643   46899999999999988


Q ss_pred             HHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCC
Q 011777          172 MLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGK  251 (477)
Q Consensus       172 l~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~  251 (477)
                      +....  .+++.|++.+++|..........             |+..+.++..  ..+..|    .+++++.++    ++
T Consensus       106 ~~~~~--~~gd~Vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~--~~~~~d----~~~l~~~i~----~~  160 (389)
T PRK05957        106 ILAIT--DPGDEIILNTPYYFNHEMAITMA-------------GCQPILVPTD--DNYQLQ----PEAIEQAIT----PK  160 (389)
T ss_pred             HHHhc--CCCCEEEEeCCCCcCHHHHHHhc-------------CCEEEEeecC--CCCCcC----HHHHHHhcC----cC
Confidence            87653  36678999889886653322111             2232222221  111111    477777765    34


Q ss_pred             eeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cccC---CCcceeeeccccc-Cc
Q 011777          252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQG---VIPDIVTMAKGIG-NG  326 (477)
Q Consensus       252 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~g---v~pDivt~sK~lg-~G  326 (477)
                      +++|++...++++| ...+++.+++|.++|++||+++|+||+|.+|.+.+...... ...+   ....+-+|||.+| .|
T Consensus       161 ~klv~~~~p~NPtG-~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G  239 (389)
T PRK05957        161 TRAIVTISPNNPTG-VVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFAS  239 (389)
T ss_pred             ceEEEEeCCCCCCC-cCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCcc
Confidence            55666665677777 45578889999999999999999999999886543111111 1112   2233457999998 69


Q ss_pred             cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc--hhhHHHHHHHHHHHHHHHHHHHHHhCCCc-eeeec
Q 011777          327 LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID--KERRQAHCADVGSHLLGRLRTLQERHDII-GDVRG  403 (477)
Q Consensus       327 ~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~--~~~~~~~~~~~~~~l~~~L~~l~~~~~~~-~~v~g  403 (477)
                      +|+||+++++++++.+.........+.+.+++.++..+|+.-.  -++..++++++.+.+.+.|++    .+.+ ...+.
T Consensus       240 lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~----~~~~~~~~~~  315 (389)
T PRK05957        240 WRIGYMVIPIHLLEAIKKIQDTILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQ----LQDRCTLHPA  315 (389)
T ss_pred             ceeEEEecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh----cCCCccccCC
Confidence            9999999999999988765444445667788888888775311  122334444455555554443    3221 21223


Q ss_pred             c-ceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          404 R-GLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       404 ~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      . |+++|+++..+        ....++.+.|+ ++||.+.|+..+    ++++||+... .+++++++++++|.+.+++
T Consensus       316 ~gg~~~~~~~~~~--------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~l~~~~~~l~~~~~~  385 (389)
T PRK05957        316 NGAFYCFLKVNTD--------LNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGA-LQKATAKEGIERLVQGLKT  385 (389)
T ss_pred             CeeEEEEEeCCCC--------CChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEec-CCHHHHHHHHHHHHHHHHh
Confidence            3 66778876321        12456777776 589999997433    4589997643 4789999999999988765

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.94  E-value=3.9e-24  Score=216.59  Aligned_cols=338  Identities=13%  Similarity=0.050  Sum_probs=207.5

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc---ccccccCChHHHHHHHHHHhhCC--CCCC-EEEEeCChHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ---HATTIYLHHAIADFAEALASKMP--GNLK-VVYFVNSGTEAN  168 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~---~~~~~~~~~~~~~l~~~La~~~~--~~~~-~v~~~~sGseA~  168 (477)
                      |..++|+..|...  ++ .++.+.+++.+.+....   +....+..+.+..+++.+.+..+  .+.+ .|++|+|+++++
T Consensus        30 ~~~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i  106 (385)
T PRK09276         30 GVDVISLGIGDPD--LP-TPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGI  106 (385)
T ss_pred             CCCEEEecCCCCC--CC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHH
Confidence            4457888877542  33 46789999988776421   11111223445555555554433  2344 588999999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      ..+++...  .+++.|++.+++|.++.......             |...+.+|......+..|    ++++++.+.   
T Consensus       107 ~~~~~~~~--~~gd~Vl~~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~g~~~d----~~~l~~~~~---  164 (385)
T PRK09276        107 AHIPLAFV--NPGDVVLVPDPGYPVYKIGTIFA-------------GGEPYFMPLKEENGFLPD----LDAIPEDVA---  164 (385)
T ss_pred             HHHHHHhC--CCCCEEEEcCCCCcChHHHHHHc-------------CCEEEEEecCCCCCCcCC----HHHHHHhcc---
Confidence            99888654  35678999999998765443322             222222221111112111    355655554   


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCC---ccccc-cCCCcceeeeccccc
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHY---WGFET-QGVIPDIVTMAKGIG  324 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~---~~~~~-~gv~pDivt~sK~lg  324 (477)
                       .++++|++++.+|++|. ..+.+.+++|.++|++||+++|+||+|..|...+...   ..++. .+....+.+|||.+|
T Consensus       165 -~~~~~v~l~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g  242 (385)
T PRK09276        165 -KKAKLMFINYPNNPTGA-VADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYN  242 (385)
T ss_pred             -ccceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcC
Confidence             24556666644666774 5688889999999999999999999999875443111   11111 223344568999998


Q ss_pred             -CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeec
Q 011777          325 -NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRG  403 (477)
Q Consensus       325 -~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g  403 (477)
                       .|+|+||+++++++++.+.........+.+++.+.++.++|+.  .+.+.+++++..+..++.+.+..++++. ....+
T Consensus       243 ~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~  319 (385)
T PRK09276        243 MTGWRIGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAALNG--PQEVVEELRKIYQERRDILVEGLRKLGL-EVEPP  319 (385)
T ss_pred             CcchhheeeeCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHhCCC-cccCC
Confidence             6999999999999998886543333345566777777777753  2334344433333333444333333332 22233


Q ss_pred             c-ceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777          404 R-GLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDY  472 (477)
Q Consensus       404 ~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~  472 (477)
                      . |.++++.+...        ....++.+.|+ ++||.+.++..+    .+++||+..  .+++++.+++++|.+
T Consensus       320 ~~~~~~~v~~~~~--------~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~--~~~~~l~~~l~~l~~  384 (385)
T PRK09276        320 KATFYVWAPVPKG--------YTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALT--VPDERIEEAVERIKK  384 (385)
T ss_pred             CcceEEEEECCCC--------CCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeC--CCHHHHHHHHHHHhh
Confidence            3 55577776321        12456777776 579999987432    368999764  578899999988864

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.94  E-value=1.2e-23  Score=214.41  Aligned_cols=352  Identities=14%  Similarity=0.067  Sum_probs=213.6

Q ss_pred             EeCCCCEEEeecCCcccc--cCCCCCHHHHHHHHHHHhhc--c-ccccccCChHHHHHHHHHHhhC--CCCCCEEEEeCC
Q 011777           91 FDENGRRYLDAFAGIVTV--SCGHCHPDVLNAIFEQSKLL--Q-HATTIYLHHAIADFAEALASKM--PGNLKVVYFVNS  163 (477)
Q Consensus        91 ~d~dG~~ylD~~~g~~~~--~lGh~~p~v~~Av~~~l~~~--~-~~~~~~~~~~~~~l~~~La~~~--~~~~~~v~~~~s  163 (477)
                      -..+|+..|++..|.+..  .+. .+|.+.+++.+.++..  . |....+..+.+..+++.+.+..  +.+.++|++|+|
T Consensus        27 ~~~~~~~~i~l~~G~p~~~~~~~-~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G  105 (409)
T PLN00143         27 NEDDHRLAISFGFGDPSCFECFR-TTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLG  105 (409)
T ss_pred             ccCCCCceeeCCCCCCCCCCCCC-CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecC
Confidence            345678899988776531  122 5788889998877642  1 2122233455566666665543  345678999999


Q ss_pred             hHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHH
Q 011777          164 GTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDH  243 (477)
Q Consensus       164 GseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~  243 (477)
                      +++|+..+++...  .+++.|++.+++|+++.......+             ...+.++......+..|    +++++++
T Consensus       106 ~~~al~~~~~~l~--~~gd~v~v~~P~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~d----~~~l~~~  166 (409)
T PLN00143        106 CKHAAEIIIKVLA--RPEANILLPRPGFPDVETYAIFHH-------------LEIRHFDLLPEKGWEVD----LDAVEAI  166 (409)
T ss_pred             hHHHHHHHHHHHc--CCCCEEEEcCCCCcCHHHHHHHcC-------------CEEEEEeccCCCCCcCC----HHHHHHh
Confidence            9999999988653  356789999999988754433322             11111111000111111    4677776


Q ss_pred             HhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCC---cceeeec
Q 011777          244 IDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVI---PDIVTMA  320 (477)
Q Consensus       244 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~---pDivt~s  320 (477)
                      ++   .+..+.++++| +|++| .+++.+.+++|.++|++|+++||+||+|..|.+.+..+..+....-.   .-+-+||
T Consensus       167 ~~---~~~~~~~~~nP-~NPTG-~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfS  241 (409)
T PLN00143        167 AD---ENTIAMVIINP-GNPCG-SVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSIS  241 (409)
T ss_pred             cc---cCCEEEEEECC-CCCCC-CccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccch
Confidence            64   34556777777 45666 56688999999999999999999999999886655211121112111   2233699


Q ss_pred             cccc-CccceEEEEeC--HHHH------HhhcccccccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHH
Q 011777          321 KGIG-NGLPLGAVVTT--PEIA------NVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRL  388 (477)
Q Consensus       321 K~lg-~G~pig~v~~~--~~~~------~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L  388 (477)
                      |.++ .|+|+||++++  +++.      +.+........+ .+.+++.++.++|+....   ++..+++++..+++.+.|
T Consensus       242 K~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L  320 (409)
T PLN00143        242 KRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPF-PPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKL  320 (409)
T ss_pred             hhcCCCccceEEEEeeCchhhhhhHHHHHHHHHHHhccCC-CCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence            9977 59999999983  3332      223222222233 467888888888753111   223334444444444443


Q ss_pred             HHHHHhCCCce--eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC--CCEEEEeCCCCCcHHHHH
Q 011777          389 RTLQERHDIIG--DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH--GNVFRIKPPMCFTKDDAD  464 (477)
Q Consensus       389 ~~l~~~~~~~~--~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~  464 (477)
                      .+    .+...  ..+..|+++|+++......  ........+.+.+.++||.+.|+..+  .+++||+..  .++++++
T Consensus       321 ~~----~~~~~~~~~p~gg~f~w~~l~~~~~~--~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~--~~~~~l~  392 (409)
T PLN00143        321 KE----IPCIMCPQKAEGAFFALVKLNLLLLE--DIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFA--VEQSSLE  392 (409)
T ss_pred             hc----CCCCCCCCCCCeeEEEEEecchhhcC--CCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEEc--CCHHHHH
Confidence            33    33222  1223477888887421000  00011233345667899999998544  478999754  5799999


Q ss_pred             HHHHHHHHHHhh
Q 011777          465 FLVDALDYSMSK  476 (477)
Q Consensus       465 ~~l~~l~~~l~~  476 (477)
                      +++++|.+++.+
T Consensus       393 ~al~rl~~~l~~  404 (409)
T PLN00143        393 DGLGRLKSFCGR  404 (409)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998753

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.94  E-value=5.2e-24  Score=202.15  Aligned_cols=328  Identities=13%  Similarity=0.087  Sum_probs=228.7

Q ss_pred             CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCC--CCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccC
Q 011777          113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPG--NLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNA  190 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~--~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~  190 (477)
                      .+|+|++|++++++.+.++++....+...++..+.+++...  +.+.++|+++.--++..+++....  .++.|++..|.
T Consensus        39 ~pp~i~~Al~~rvdhGvfGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T~--~gd~Vvi~tPv  116 (388)
T COG1168          39 TPPEIIEALRERVDHGVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALTK--PGDGVVIQTPV  116 (388)
T ss_pred             CCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhCc--CCCeeEecCCC
Confidence            58999999999999876555533344778888888888653  456899999999999999986544  67889999999


Q ss_pred             ccCCcccccccccCCCCCCCCCCCCeeeecCCCCcC-CCCCCCHHHHHHHHHHHHhccCCCCe-eEEEecccCCCCCeee
Q 011777          191 YHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYH-GSFGSDAARYAQDLQDHIDFGTSGKV-AGFIAETIQGVGGAVE  268 (477)
Q Consensus       191 yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~~~-a~vi~epi~~~~G~~~  268 (477)
                      ||-........             +...+..|..+. ..+..|    +++||+.+.   .+++ ..|+|+|.| ++| .+
T Consensus       117 Y~PF~~~i~~n-------------~R~~i~~pL~~~~~~y~iD----~~~LE~~~~---~~~vkl~iLCnPHN-P~G-rv  174 (388)
T COG1168         117 YPPFYNAIKLN-------------GRKVIENPLVEDDGRYEID----FDALEKAFV---DERVKLFILCNPHN-PTG-RV  174 (388)
T ss_pred             chHHHHHHhhc-------------CcEEEeccccccCCcEEec----HHHHHHHHh---cCCccEEEEeCCCC-CCC-cc
Confidence            98654332221             233333332211 111111    688998887   3444 455666654 455 78


Q ss_pred             CCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc-----CCCcceeeeccccc-CccceEEEEeC-HHHHHh
Q 011777          269 LAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ-----GVIPDIVTMAKGIG-NGLPLGAVVTT-PEIANV  341 (477)
Q Consensus       269 ~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~-----gv~pDivt~sK~lg-~G~pig~v~~~-~~~~~~  341 (477)
                      ++++.|.+|.+||++||+.+|+||+++.+-..|.+++.+...     +...-+++-||+|+ +|+..++++.+ +++.+.
T Consensus       175 wt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~  254 (388)
T COG1168         175 WTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAK  254 (388)
T ss_pred             ccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHH
Confidence            999999999999999999999999999998777444333211     11111233479999 69999987775 555454


Q ss_pred             hcc-cccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeE-EEEEeeCCC
Q 011777          342 MAQ-KIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMV-GMELVTDRK  417 (477)
Q Consensus       342 ~~~-~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~-~i~~~~~~~  417 (477)
                      +.. ....+..+.|.+++.|..++++..++  +++.+.++.+.+++.+.+++.   .|.+....++|.++ |+++..-..
T Consensus       255 ~~~~l~~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~---~P~v~v~~p~gTYL~WLD~r~l~l  331 (388)
T COG1168         255 FLKRLKRNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKH---LPGVKVTEPQGTYLAWLDCRELGL  331 (388)
T ss_pred             HHHHHHHhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh---CCCcEEecCCCceeeeeeccccCC
Confidence            433 33445667899999999999987654  567777888888887777663   47777788888866 777753211


Q ss_pred             CCCccHHHHHHHHHHHHH-cCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          418 EKTPAKAETAVLFEKLRE-LGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       418 ~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                             ...++.+.|++ .+|.+.+|..+    .+++|+  ++..+++-+++++++|.+++++
T Consensus       332 -------~d~~l~~~ll~~akVal~~G~~FG~~g~gf~Rl--N~acpr~~L~eal~ri~~al~~  386 (388)
T COG1168         332 -------DDSELAEFLLEEAKVALSPGSTFGEEGSGFVRL--NFACPRAILEEALERLKRALKK  386 (388)
T ss_pred             -------ChHHHHHHHHHhhcEeccCCCccCcCCCceEEE--ecCCCHHHHHHHHHHHHHHHhc
Confidence                   11345555554 46777776333    378999  5788999999999999999875

>PRK09082 methionine aminotransferase; Validated

Probab=99.94  E-value=2.6e-24  Score=217.77  Aligned_cols=339  Identities=13%  Similarity=0.053  Sum_probs=214.1

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhCCCC--C-CEEEEeCChHHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKMPGN--L-KVVYFVNSGTEANEL  170 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~~~~--~-~~v~~~~sGseA~~~  170 (477)
                      +.++||..|...  ++ .++.+.+++.+.++...  +....+..+.+..+++++.+.++..  . +++++|+|+++|+..
T Consensus        30 ~~~i~l~~g~~~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~  106 (386)
T PRK09082         30 HGAINLSQGFPD--FD-GPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFA  106 (386)
T ss_pred             CCEEEecCCCCC--CC-CCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHH
Confidence            346888887653  33 47889999888776432  1112233455677888877765432  2 379999999999999


Q ss_pred             HHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCC
Q 011777          171 AMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG  250 (477)
Q Consensus       171 Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~  250 (477)
                      +++...  .+++.|++.+++|.+........             |...+.++.... .+..|    .+++++.++    .
T Consensus       107 ~~~~~~--~~gd~Vli~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~-~~~~d----~~~l~~~~~----~  162 (386)
T PRK09082        107 AILALV--RPGDEVIVFDPSYDSYAPAIELA-------------GGRAVRVALQPP-DFRVD----WQRFAAAIS----P  162 (386)
T ss_pred             HHHHHc--CCCCEEEEeCCCchhhHHHHHHc-------------CCEEEEEecCcc-cccCC----HHHHHHhcC----c
Confidence            998653  35678999999887764433222             222222222110 11111    466777665    3


Q ss_pred             CeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cccCCCcc---eeeeccccc-C
Q 011777          251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQGVIPD---IVTMAKGIG-N  325 (477)
Q Consensus       251 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~gv~pD---ivt~sK~lg-~  325 (477)
                      ++++|++...++++|. .++++.+++|.++|++||+++|+||+|..+...+.....+ ...+....   +-+|||.+| .
T Consensus       163 ~~~~v~l~~p~NPtG~-~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~  241 (386)
T PRK09082        163 RTRLIILNTPHNPSGT-VWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVT  241 (386)
T ss_pred             cceEEEEeCCCCCCCc-CCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccch
Confidence            4566666655677774 4578889999999999999999999998775544111111 22222222   337999998 6


Q ss_pred             ccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccc
Q 011777          326 GLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG  405 (477)
Q Consensus       326 G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g  405 (477)
                      |+|+||+++++++++.+........++.+.+++.++.+.++.  .+++.+++++..+..++.+.+...+++.......-|
T Consensus       242 G~RiG~iv~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~g~  319 (386)
T PRK09082        242 GWKVGYCVAPAALSAEFRKVHQYNTFTVNTPAQLALADYLRA--EPEHYLELPAFYQAKRDRFRAALANSRFKLLPCEGT  319 (386)
T ss_pred             hhhhhhhhCCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCee
Confidence            999999999999998887665556677888888887777752  233333333333333333333333333222222335


Q ss_pred             eeEEEEEeeCCCCCCccHHHHHHHHHHH-HHcCceeeccCCC------CCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777          406 LMVGMELVTDRKEKTPAKAETAVLFEKL-RELGVLVGKGGLH------GNVFRIKPPMCFTKDDADFLVDALDY  472 (477)
Q Consensus       406 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~------~~~iRi~p~~~~t~e~i~~~l~~l~~  472 (477)
                      .++|+++..-.      .....++.+.| .++||.+.|+..+      .+++||+.+  .+++++++++++|.+
T Consensus       320 ~~~~~~~~~~~------~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~--~~~~~l~~~~~rl~~  385 (386)
T PRK09082        320 YFQLVDYSAIS------DLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFA--KQEETLDAAAERLCQ  385 (386)
T ss_pred             EEEEEeccccC------CCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEec--CCHHHHHHHHHHHhh
Confidence            66777773200      01235676665 5789999987533      368999755  579999999999875

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.94  E-value=3.2e-24  Score=215.43  Aligned_cols=323  Identities=14%  Similarity=0.087  Sum_probs=211.2

Q ss_pred             CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEE-eCChHHHHHHH
Q 011777           93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYF-VNSGTEANELA  171 (477)
Q Consensus        93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~-~~sGseA~~~A  171 (477)
                      .+++.++||..+..  .+| .+|.+.+++.+.+....    .|+.+...++++.++++++.+.+++++ ++|.++++..+
T Consensus        31 ~~~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~----~y~~~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~  103 (361)
T PRK00950         31 IDPESIIKLGSNEN--PLG-PSPKAVEAIEKELSKIH----RYPEPDAPELREALSKYTGVPVENIIVGGDGMDEVIDTL  103 (361)
T ss_pred             CCccceEEccCCCC--CCC-CCHHHHHHHHHHHHhhc----CCCCCCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHH
Confidence            46678999987653  466 57899999988776432    244444578999999998776778888 67778888888


Q ss_pred             HHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCC
Q 011777          172 MLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGK  251 (477)
Q Consensus       172 l~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~  251 (477)
                      ++...  .+++.|++.+++|..+.......             |.....++...  .+..+    ++++++.+.    .+
T Consensus       104 ~~~~~--~~gd~vlv~~p~y~~~~~~~~~~-------------g~~~~~~~~~~--~~~~~----~~~l~~~~~----~~  158 (361)
T PRK00950        104 MRTFI--DPGDEVIIPTPTFSYYEISAKAH-------------GAKPVYAKREE--DFSLD----VDSVLNAIT----EK  158 (361)
T ss_pred             HHHhc--CCCCEEEEcCCChHHHHHHHHHc-------------CCEEEEeecCC--CCCcC----HHHHHHHhc----cC
Confidence            87542  35677888888887653322211             22222222111  11111    467777664    24


Q ss_pred             eeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cccCCCcceeeeccccc-Cccce
Q 011777          252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQGVIPDIVTMAKGIG-NGLPL  329 (477)
Q Consensus       252 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~gv~pDivt~sK~lg-~G~pi  329 (477)
                      ++++++...++++|.+.+    .+++.++|+++|+++|+||+|.+|. .+ ..... +..+....+-+|||.+| .|+|+
T Consensus       159 ~~~v~~~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~y~~~~-~~-~~~~~~~~~~~vi~~~S~SK~~g~~GlRi  232 (361)
T PRK00950        159 TKVIFLCTPNNPTGNLIP----EEDIRKILESTDALVFVDEAYVEFA-EY-DYTPLALEYDNLIIGRTFSKVFGLAGLRI  232 (361)
T ss_pred             CCEEEEeCCCCCCCCCcC----HHHHHHHHHHCCcEEEEECchhhhC-cc-chHHHHHhcCCEEEEEeehHhhcCchhhc
Confidence            555555455677777776    6788889999999999999998874 12 22111 11222223348999999 69999


Q ss_pred             EEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEE
Q 011777          330 GAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVG  409 (477)
Q Consensus       330 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~  409 (477)
                      ||+++++++++.+....  .+++.++++++++.++++   +.++.++..+..+..++.+.+..   . +...+..|.+++
T Consensus       233 G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~l---~-~~~~~~~~~~i~  303 (361)
T PRK00950        233 GYGFVPEWLIDYYMRAK--TPFSLTRLSQAAAIAALS---DKEYIEKSIEHGIKSREYLYNEL---P-FKVYPSEANFVL  303 (361)
T ss_pred             chhcCCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhhc---C-eeECCCcceEEE
Confidence            99999999988776533  345677888888877775   33444444444444444443322   1 112234577778


Q ss_pred             EEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          410 MELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       410 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      +.+..         ....++.+.|.++||.+.++..+    .+++||++.   +++++++++++|++++
T Consensus       304 ~~~~~---------~~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~---~~~~~~~l~~~L~~il  360 (361)
T PRK00950        304 VDVTP---------MTAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG---TFEENERFLEILKEIV  360 (361)
T ss_pred             EECCC---------CCHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC---CHHHHHHHHHHHHHHh
Confidence            77721         12457888899999999886432    368999754   7889999999999876

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.93  E-value=1.7e-23  Score=214.08  Aligned_cols=351  Identities=16%  Similarity=0.095  Sum_probs=209.4

Q ss_pred             CCEEEeecCCcccccCCC-CCHHHHHHHHHHHhhcc---ccccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGH-CHPDVLNAIFEQSKLLQ---HATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEAN  168 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh-~~p~v~~Av~~~l~~~~---~~~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA~  168 (477)
                      |+.+|++..|.+...-.. .++++.+++.+.++...   +....+..+.++.+++.+....+  .+.++|++|+|+++|+
T Consensus        51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al  130 (430)
T PLN00145         51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAI  130 (430)
T ss_pred             CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHH
Confidence            788999888765321111 36789999998886532   11112233445555555544332  2457899999999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      ..+++...  .+++.|++.+++|+.+.......+.           .+..++...  ...+.-|    +++++++++   
T Consensus       131 ~l~~~~l~--~~Gd~Vlv~~P~y~~y~~~~~~~g~-----------~~~~~~~~~--~~~~~~d----~~~l~~~~~---  188 (430)
T PLN00145        131 EIIMSVLA--QPGANILLPRPGYPLYEARAVFSGL-----------EVRHFDLLP--ERGWEVD----LEGVEALAD---  188 (430)
T ss_pred             HHHHHHhc--CCCCEEEEcCCCCccHHHHHHHcCC-----------EEEEeeCCc--ccCCcCC----HHHHHHHhC---
Confidence            99988653  3567899999999876443322221           112221110  1112112    467777765   


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCC---cceeeeccccc-
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVI---PDIVTMAKGIG-  324 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~---pDivt~sK~lg-  324 (477)
                      ++..+++++.| +|++| .+.+.+.+++|.++|++||+++|+||+|..|.+.+..+..+...+-.   .-+-+|||.++ 
T Consensus       189 ~~~~~i~i~~P-~NPtG-~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~  266 (430)
T PLN00145        189 ENTVAMVIINP-NNPCG-SVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVV  266 (430)
T ss_pred             cCceEEEEeCC-CCCCC-CCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCC
Confidence            34456666777 45666 56688899999999999999999999999886544222222111111   22336999977 


Q ss_pred             CccceEEEEe--CHHHHH------hhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCC
Q 011777          325 NGLPLGAVVT--TPEIAN------VMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHD  396 (477)
Q Consensus       325 ~G~pig~v~~--~~~~~~------~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~  396 (477)
                      .|||+||+++  ++++++      .+.... ..+.+.+.+.|.|+..+|+.- .+++.++.++..+..++.+.+..++++
T Consensus       267 pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Q~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~  344 (430)
T PLN00145        267 PGWRLGWIATCDPNGILKETKVVDSIRNYL-NISTDPATFVQGAIPQIIANT-KEEFFTKTLGLLKETADICYEKIKEIK  344 (430)
T ss_pred             CCeeEEEEEEecchhhhhhhHHHHHHHHHh-cccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            5999999997  344332      222211 122245678888888888631 133333333333333333333333444


Q ss_pred             Ccee-eec-cceeEEEEEeeCCCCCCccHHHHHHHH-HHHHHcCceeeccCCCC--CEEEEeCCCCCcHHHHHHHHHHHH
Q 011777          397 IIGD-VRG-RGLMVGMELVTDRKEKTPAKAETAVLF-EKLRELGVLVGKGGLHG--NVFRIKPPMCFTKDDADFLVDALD  471 (477)
Q Consensus       397 ~~~~-v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~-~~l~~~Gv~v~~~~~~~--~~iRi~p~~~~t~e~i~~~l~~l~  471 (477)
                      .+.. ..+ -|+++++.+.....   +......+++ +.+.++||++.|+..++  +++||+..  .+++++++++++|.
T Consensus       345 g~~~~~~P~ga~y~~v~l~~~~~---~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~--~~~~~l~~al~rl~  419 (430)
T PLN00145        345 CITCPHKPEGSMFVMVKLDLSCL---SGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFA--IDPPSLEDGLERLK  419 (430)
T ss_pred             CCCCCcCCCeeeEEEeccChhhc---CCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeC--CCHHHHHHHHHHHH
Confidence            3332 233 45666776632100   0000123344 55567899999985443  89999755  58899999999999


Q ss_pred             HHHhh
Q 011777          472 YSMSK  476 (477)
Q Consensus       472 ~~l~~  476 (477)
                      +++.+
T Consensus       420 ~~~~~  424 (430)
T PLN00145        420 SFCLR  424 (430)
T ss_pred             HHHHH
Confidence            98854

>PRK08912 hypothetical protein; Provisional

Probab=99.93  E-value=6.7e-24  Score=214.99  Aligned_cols=342  Identities=15%  Similarity=0.055  Sum_probs=211.7

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhCC--CCCC-EEEEeCChHHHHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKMP--GNLK-VVYFVNSGTEANELA  171 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~~--~~~~-~v~~~~sGseA~~~A  171 (477)
                      ..+||..|...  .+ .++.+.+++.+.+....  +....+..+.++.+++.+.+..+  .+.+ +|++|+|+++|+..+
T Consensus        27 ~~i~l~~g~p~--~~-~p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~  103 (387)
T PRK08912         27 GAINLGQGFPD--DP-GPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAA  103 (387)
T ss_pred             CeEEccCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHH
Confidence            46888888764  33 36788888887765321  11112233455566666654433  3455 899999999999888


Q ss_pred             HHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCC
Q 011777          172 MLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGK  251 (477)
Q Consensus       172 l~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~  251 (477)
                      +....  .+++.|++.+++|.++...+...             |...+.++... ..+..|    .+++++.+.    .+
T Consensus       104 ~~~~~--~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~~~~~~-~~~~~~----~~~l~~~~~----~~  159 (387)
T PRK08912        104 LLALV--EPGDEVVLFQPLYDAYLPLIRRA-------------GGVPRLVRLEP-PHWRLP----RAALAAAFS----PR  159 (387)
T ss_pred             HHHhc--CCCCEEEEeCCCchhhHHHHHHc-------------CCEEEEEecCc-ccCcCC----HHHHHHHhC----cc
Confidence            87543  35678999999998765443222             22222221110 011111    467777665    24


Q ss_pred             eeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cccCC---Ccceeeeccccc-Cc
Q 011777          252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQGV---IPDIVTMAKGIG-NG  326 (477)
Q Consensus       252 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~gv---~pDivt~sK~lg-~G  326 (477)
                      ++++++...+|++| ...+.+.+++|.++|++|++++|+||+|..|...+.....+ ...+.   ..-+-+|||.+| .|
T Consensus       160 ~~~v~l~~p~NPtG-~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G  238 (387)
T PRK08912        160 TKAVLLNNPLNPAG-KVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTG  238 (387)
T ss_pred             ceEEEEeCCCCCcC-cccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcC
Confidence            44455444466667 45678889999999999999999999998775544111111 11122   222347899999 79


Q ss_pred             cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc-c
Q 011777          327 LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGR-G  405 (477)
Q Consensus       327 ~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-g  405 (477)
                      +|+||+++++++++.+.......+++.++..+.++.+++..  .+++.+++++..+..++.+.+....++. ....+. |
T Consensus       239 lRiG~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~g~  315 (387)
T PRK08912        239 WKVGFVCAAPPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGK--PDDYFEGMRADLARSRDRLAAGLRRIGF-PVLPSQGT  315 (387)
T ss_pred             ceeEEEecCHHHHHHHHHHHhhccccCChHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHhCCC-cccCCCcc
Confidence            99999999999998886654445577777777777777742  2333333333333333333333333332 222333 5


Q ss_pred             eeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC------CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          406 LMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH------GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       406 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~------~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .++|+.+.....     .....++.+.|+ ++||.+.|+..+      .+++|++..  .+++++++++++|.+++++
T Consensus       316 ~~l~~~l~~~~~-----~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~--~~~~~l~~~l~rl~~~l~~  386 (387)
T PRK08912        316 YFLTVDLAPLGL-----AEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFA--KRDATLDEAVERLAAARRR  386 (387)
T ss_pred             eEEEecccccCC-----CCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHhc
Confidence            567777632100     012346777765 679999987433      378999755  4689999999999998864

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.93  E-value=5.6e-24  Score=213.02  Aligned_cols=328  Identities=13%  Similarity=0.083  Sum_probs=213.2

Q ss_pred             eCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHH
Q 011777           92 DENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELA  171 (477)
Q Consensus        92 d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~A  171 (477)
                      ..++..++||..|.  +++| .+|.+.+++.+.+....    .|+.....++++.++++++.+.++|++++|+++++..+
T Consensus        16 ~~~~~~~i~l~~~~--~~~~-~p~~~~~a~~~~~~~~~----~y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~   88 (356)
T PRK08056         16 GISPDQLLDFSANI--NPLG-MPVSLKRAIIDNLDCAE----RYPDVEYRHLHQALARHHQVPASWILAGNGETESIFAV   88 (356)
T ss_pred             CCChhhEEEecccc--CCCC-CCHHHHHHHHHHHHhcc----cCcCccHHHHHHHHHHHhCcChhhEEECCCHHHHHHHH
Confidence            34567789988654  4566 57899999988776432    34444568899999999877778999999999999988


Q ss_pred             HHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCC
Q 011777          172 MLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGK  251 (477)
Q Consensus       172 l~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~  251 (477)
                      ++..   .++ ++++..++|..+.......             |...+.+|......+..|     +++++.+.    ++
T Consensus        89 ~~~l---~~g-~viv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~~-----~~~~~~~~----~~  142 (356)
T PRK08056         89 VSGL---KPR-RAMIVTPGFAEYRRALQQV-------------GCEIRRYSLREADGWQLT-----DAILEALT----PD  142 (356)
T ss_pred             HHHh---CCC-CEEEeCCCcHHHHHHHHHc-------------CCeEEEEecccccCCCcc-----HHHHHhcc----CC
Confidence            8854   233 5777888887654332222             222222222111112211     23333332    34


Q ss_pred             eeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc-ccccCCCcceeeeccccc-Cccce
Q 011777          252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG-FETQGVIPDIVTMAKGIG-NGLPL  329 (477)
Q Consensus       252 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~-~~~~gv~pDivt~sK~lg-~G~pi  329 (477)
                      +++|++...+|++|. ..+++.+++|.++|++||+++|+||+|.+|...+..+.. +...+...-+-+|||.++ .|+|+
T Consensus       143 ~k~v~l~~p~NPTG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri  221 (356)
T PRK08056        143 LDCLFLCTPNNPTGL-LPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRL  221 (356)
T ss_pred             CCEEEEeCCcCCCCC-CCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcchhh
Confidence            555555545666775 678899999999999999999999999988544411111 122222222347999999 79999


Q ss_pred             EEEEeC-HHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHH----HHHHHHHHHHHHHHHHHHHhCCCceeeecc
Q 011777          330 GAVVTT-PEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQ----AHCADVGSHLLGRLRTLQERHDIIGDVRGR  404 (477)
Q Consensus       330 g~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~----~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~  404 (477)
                      ||++++ +++++.+...  ...++.+.+++.++.++++   .+.+.    +.+++..+++.+.|+    +.+.+...+..
T Consensus       222 G~~v~~~~~~~~~l~~~--~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~----~~~~~~~~~~~  292 (356)
T PRK08056        222 GYLVNSDDAAVARMRRQ--QMPWSINAFAALAGEVILQ---DRAYQQATWQWLAEEGARFYQALC----ALPLLTVWPGR  292 (356)
T ss_pred             eeeecCCHHHHHHHHHh--CCCCchhHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHh----cCCCcEEcCCC
Confidence            999984 6777776543  2456677788877777764   23333    333444444444443    33333333456


Q ss_pred             ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          405 GLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       405 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      |.++|+.+..+          ..++.+.|+++||.+.++..+    .+++||+.   .++++.+.+++.|+++++
T Consensus       293 ~~~~~~~~~~~----------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~---~~~~~~~~l~~~l~~~~~  354 (356)
T PRK08056        293 ANYLFLRCERP----------DIDLQRALLTQRILIRSCANYPGLDSRYYRVAI---RSAAENERLLAALRNVLT  354 (356)
T ss_pred             CcEEEEEcCCC----------hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEE---cCHHHHHHHHHHHHHHHc
Confidence            78888776311          246788899999999887543    36899964   378999999999998765

>PRK05839 hypothetical protein; Provisional

Probab=99.93  E-value=4.5e-24  Score=215.00  Aligned_cols=332  Identities=12%  Similarity=0.041  Sum_probs=210.8

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-ccccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHHHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-HATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEANEL  170 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-~~~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA~~~  170 (477)
                      .|+.++||..|...  ++ .++.+.+++.+...... +....+..+.++.+++.+.+..+  .+.++|++|+|+++|+..
T Consensus        22 ~~~~~i~l~~~~p~--~~-~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~   98 (374)
T PRK05839         22 KEYKGLDLTIGEPQ--FE-TPKFIQDALKNNAHLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFN   98 (374)
T ss_pred             CCCCeEEcCCCCCC--CC-CCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHH
Confidence            38899999887753  55 36888888877654322 22222334556677777777644  456899999999999988


Q ss_pred             HHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCC
Q 011777          171 AMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG  250 (477)
Q Consensus       171 Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~  250 (477)
                      ++++...-.+++.|++..++|..+.......             |+..++++......+..|.    ++  ..++     
T Consensus        99 ~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~-------------g~~v~~v~~~~~~~~~~d~----~~--~~~~-----  154 (374)
T PRK05839         99 FPQFVLFDKQNPTIAYPNPFYQIYEGAAIAS-------------RAKVLLMPLTKENDFTPSL----NE--KELQ-----  154 (374)
T ss_pred             HHHHHhcCCCCCEEEECCCCchhhHHHHHhc-------------CCEEEEeecccccCCcCCc----ch--hhhc-----
Confidence            8775432235678889999998876554332             3333333322111222111    11  1121     


Q ss_pred             CeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cc--------cCCCcceeeecc
Q 011777          251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ET--------QGVIPDIVTMAK  321 (477)
Q Consensus       251 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~--------~gv~pDivt~sK  321 (477)
                      ++++|++...+|++| ...+++.+++|.++|++||++||+||+|..|...+ ....+ ..        ++...-+-+|||
T Consensus       155 ~~k~v~i~nP~NPTG-~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~-~~~s~~~~~~~~~~~~~~~vi~~~SfSK  232 (374)
T PRK05839        155 EVDLVILNSPNNPTG-RTLSLEELIEWVKLALKHDFILINDECYSEIYENT-PPPSLLEASILVGNESFKNVLVINSISK  232 (374)
T ss_pred             cccEEEEeCCCCCcC-cccCHHHHHHHHHHHHHcCCEEEeccchhhcccCC-CCCCHhhhhcccCccccCcEEEEecccc
Confidence            344555444456666 45688999999999999999999999999874332 22111 10        111222337999


Q ss_pred             ccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCcee
Q 011777          322 GIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGD  400 (477)
Q Consensus       322 ~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~  400 (477)
                      .++ .|+|+||+++++++++.+.......+++.+.+.+.++.+++.   ++++.++.++..+..++.+.+.   .+..  
T Consensus       233 ~~~~~GlRiG~ii~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~---l~~~--  304 (374)
T PRK05839        233 RSSAPGLRSGFIAGDASILKKYKAYRTYLGCASPLPLQKAAAVAWL---DDEHAEFFRNIYAKNLKLAREI---LGIT--  304 (374)
T ss_pred             ccCCccceeEEEecCHHHHHHHHHHHhhcCCCCChHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHh---cCCC--
Confidence            987 699999999999998887654433455677777877776663   2344444443333333333332   2221  


Q ss_pred             eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHH-cCceeeccCCC------CCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          401 VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGGLH------GNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       401 v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~------~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      .+..|+++|+.+..           ..++.+.|++ +||.+.|+..+      .+++||+.  ..+++++.+++++|.++
T Consensus       305 ~p~gg~fi~~~~~~-----------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~--~~~~~~~~~~l~~l~~~  371 (374)
T PRK05839        305 IPPATFYVWLPVDN-----------DEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIAL--VYDTPKLEKALEIIKTY  371 (374)
T ss_pred             CCCeeEEEEEeCCC-----------hHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEe--cCCHHHHHHHHHHHHHH
Confidence            34457788887621           2457777764 99999987322      37999975  45799999999999988


Q ss_pred             Hh
Q 011777          474 MS  475 (477)
Q Consensus       474 l~  475 (477)
                      ++
T Consensus       372 l~  373 (374)
T PRK05839        372 LE  373 (374)
T ss_pred             hh
Confidence            74

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.93  E-value=7.8e-24  Score=212.73  Aligned_cols=323  Identities=16%  Similarity=0.072  Sum_probs=206.6

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCC---CCCCEEEEeCChHHHHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMP---GNLKVVYFVNSGTEANELA  171 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~---~~~~~v~~~~sGseA~~~A  171 (477)
                      +..++||..|...   ...+|.+.+++.+......+....+..+.+..+++++.+..+   .+.++|++|+|+++++..+
T Consensus        26 ~~~~i~l~~~~p~---~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~  102 (364)
T PRK07865         26 PDGIVDLSVGTPV---DPVPPVIQEALAAAADAPGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWL  102 (364)
T ss_pred             CCCEEEcCCCCCC---CCCCHHHHHHHHHHHhhCCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHH
Confidence            3456788776532   334688888887655433333223334556777777776543   4467999999999999987


Q ss_pred             HHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCC
Q 011777          172 MLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGK  251 (477)
Q Consensus       172 l~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~  251 (477)
                      +.+.. ..+++.|++.+++|.++.......             |...+.+++             .++++   .    .+
T Consensus       103 ~~~l~-~~~gd~Vl~~~p~y~~~~~~~~~~-------------g~~~~~~~~-------------~~~l~---~----~~  148 (364)
T PRK07865        103 PTLLG-LGPGDVVVIPELAYPTYEVGARLA-------------GATVVRADS-------------LTELG---P----QR  148 (364)
T ss_pred             HHHHc-CCCCCEEEECCCCcccHHHHHHhc-------------CCEEEecCC-------------hhhCC---c----cc
Confidence            66542 235678999999998764443222             222222111             12221   1    35


Q ss_pred             eeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc-ccc--cC----CCcceeeeccccc
Q 011777          252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG-FET--QG----VIPDIVTMAKGIG  324 (477)
Q Consensus       252 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~-~~~--~g----v~pDivt~sK~lg  324 (477)
                      +++|++++.+|++|. +.+.+.+++|.++|++||+++|+||+|.+|...+ .... ++.  .+    ...-+-+|||.++
T Consensus       149 ~~~v~~~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  226 (364)
T PRK07865        149 PALIWLNSPSNPTGR-VLGVDHLRKVVAWARERGAVVASDECYLELGWDA-EPVSILDPRVCGGDHTGLLAVHSLSKQSN  226 (364)
T ss_pred             ceEEEEcCCCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEecchhhhccCC-CCCccccccccCCccceEEEEeechhccC
Confidence            667777666777774 5578889999999999999999999999886555 2221 111  01    1122337999997


Q ss_pred             -CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeec
Q 011777          325 -NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRG  403 (477)
Q Consensus       325 -~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g  403 (477)
                       .|+|+||+++++++++.+.......+++.+.+.+.++.++|+.   +++.++.++..+..++.+.+...+++.......
T Consensus       227 ~~GlRiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~  303 (364)
T PRK07865        227 LAGYRAGFVAGDPALVAELLEVRKHAGMMVPAPVQAAMVAALGD---DAHVREQRERYARRRAVLRPALEAAGFRVDHSE  303 (364)
T ss_pred             CCceeeEEEecCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence             6999999999999988887554445567788888888777753   333333444334444444444444442222222


Q ss_pred             cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHH
Q 011777          404 RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALD  471 (477)
Q Consensus       404 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~  471 (477)
                      .|+++|+.+..          ....+.+.|.++||.+.++..+    .+++||+..  .+++++++++++|.
T Consensus       304 ~~~~~~~~~~~----------~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~~~~~~~~l~  363 (364)
T PRK07865        304 AGLYLWATRGE----------DCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALT--ATDERIAAAVERLA  363 (364)
T ss_pred             ccEEEEEeCCC----------CHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEec--CCHHHHHHHHHHhh
Confidence            35566776521          1345678889999999886432    468999754  47899999999885

>PLN02656 tyrosine transaminase

Probab=99.93  E-value=2.5e-23  Score=212.03  Aligned_cols=353  Identities=18%  Similarity=0.114  Sum_probs=215.4

Q ss_pred             CCCEEEeecCCccccc-CCCCCHHHHHHHHHHHhhcc---ccccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHH
Q 011777           94 NGRRYLDAFAGIVTVS-CGHCHPDVLNAIFEQSKLLQ---HATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEA  167 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~-lGh~~p~v~~Av~~~l~~~~---~~~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA  167 (477)
                      .|+.+++|..|..... .-..++.+++++.+.+....   +....+..+.++.+++.+....+  .+.++|++|+|+++|
T Consensus        29 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a  108 (409)
T PLN02656         29 NGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQA  108 (409)
T ss_pred             cCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHH
Confidence            5788999988776421 12457899999988876521   11122233445555555554432  345789999999999


Q ss_pred             HHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc
Q 011777          168 NELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG  247 (477)
Q Consensus       168 ~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~  247 (477)
                      +..++....  .+++.|++.+++|..+.......             |...+.++......+..|    .++++++++  
T Consensus       109 l~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~i~~~~~~~~~~d----~~~l~~~~~--  167 (409)
T PLN02656        109 IDVALSMLA--RPGANILLPRPGFPIYELCAAFR-------------HLEVRYVDLLPEKGWEVD----LDAVEALAD--  167 (409)
T ss_pred             HHHHHHHHh--CCCCeEEEeCCCCCcHHHHHHHc-------------CCEEEEEeCCCcCCCCCC----HHHHHHHhc--
Confidence            999988653  35678999999987553322211             122222211101111112    467777665  


Q ss_pred             CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc---cccCCCcceeeeccccc
Q 011777          248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF---ETQGVIPDIVTMAKGIG  324 (477)
Q Consensus       248 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~---~~~gv~pDivt~sK~lg  324 (477)
                       ++..+++++.| +|++| ...+++.+++|.++|++||++||+||+|.+|.+.+..+..+   +......-+-+|||.++
T Consensus       168 -~~~~~v~l~~P-~NPtG-~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~  244 (409)
T PLN02656        168 -QNTVALVIINP-GNPCG-NVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWI  244 (409)
T ss_pred             -cCceEEEEECC-CCCCC-CCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhcc
Confidence             23455666666 55566 45678889999999999999999999999886655211111   11111222347999977


Q ss_pred             -CccceEEEEeC--------HHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhC
Q 011777          325 -NGLPLGAVVTT--------PEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERH  395 (477)
Q Consensus       325 -~G~pig~v~~~--------~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~  395 (477)
                       .|+|+||++++        +++++.+..... ...+.+.+++.++.++|+... +++.++.++..+..++.+.+..+++
T Consensus       245 ~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~q~a~~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~L~~~  322 (409)
T PLN02656        245 VPGWRLGWFVTTDPSGSFRDPKIVERIKKYFD-ILGGPATFIQAAVPTILEQTD-ESFFKKTINILKQSSDICCDRIKEI  322 (409)
T ss_pred             CcceeEEEEEEeCcccccccHHHHHHHHHHHh-hhcCCCHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence             59999999984        577777654322 123567889999988886321 2333333333333333343333334


Q ss_pred             CCce-eeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC--CCEEEEeCCCCCcHHHHHHHHHHHH
Q 011777          396 DIIG-DVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH--GNVFRIKPPMCFTKDDADFLVDALD  471 (477)
Q Consensus       396 ~~~~-~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l~~l~  471 (477)
                      +... ..++. |+++|+++......  ........+.+.|.++||.+.|+..+  .+++||+..  .+++++++++++|.
T Consensus       323 ~~~~~~~~p~gg~~~w~~l~~~~~~--~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~--~~~e~l~eal~rl~  398 (409)
T PLN02656        323 PCITCPHKPEGSMAVMVKLNLSLLE--DISDDIDFCFKLAREESVIILPGTAVGLKNWLRITFA--ADPSSLEEALGRIK  398 (409)
T ss_pred             CCCcCCcCCCeEEEEEEecchhhcC--CCCCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeC--CCHHHHHHHHHHHH
Confidence            3222 12333 57778877321000  00011234557778899999998544  468999765  58999999999999


Q ss_pred             HHHhh
Q 011777          472 YSMSK  476 (477)
Q Consensus       472 ~~l~~  476 (477)
                      +++.+
T Consensus       399 ~~~~~  403 (409)
T PLN02656        399 SFYLR  403 (409)
T ss_pred             HHHHH
Confidence            98753

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.93  E-value=8.4e-24  Score=221.50  Aligned_cols=350  Identities=15%  Similarity=0.070  Sum_probs=212.6

Q ss_pred             CCCCEEEeecCCcccccCCC-CCHHHHHHHHHHHhhccc-cccccCChHHHHHHHHHHhhC--CCCCCEEEEeCChHHHH
Q 011777           93 ENGRRYLDAFAGIVTVSCGH-CHPDVLNAIFEQSKLLQH-ATTIYLHHAIADFAEALASKM--PGNLKVVYFVNSGTEAN  168 (477)
Q Consensus        93 ~dG~~ylD~~~g~~~~~lGh-~~p~v~~Av~~~l~~~~~-~~~~~~~~~~~~l~~~La~~~--~~~~~~v~~~~sGseA~  168 (477)
                      ..|+.+|||..|.. .++|. .++++++++.+.+..... ....+..+.++.+++.+.+..  ..+.++|++++|++|++
T Consensus       143 ~~g~~~i~l~~G~p-~~~~~~~p~~~~~~~~~~~~~~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal  221 (517)
T PRK13355        143 AAGTHILKLNIGNP-APFGFRTPDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELI  221 (517)
T ss_pred             HcCCCeEEecCcCC-CcCCCCCCHHHHHHHHHHhhcCCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHH
Confidence            46788999988765 34564 467899999887754321 111122333444444443332  34567899999999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      ..+++...  .+++.|++.+++|..+...+...+.             ..+.++......|..|    ++++++.+.   
T Consensus       222 ~~~~~~l~--~~Gd~Vli~~P~y~~y~~~~~~~g~-------------~~v~~~~~~~~~~~~d----~~~l~~~~~---  279 (517)
T PRK13355        222 NLSMSALL--DDGDEVLIPSPDYPLWTACVNLAGG-------------TAVHYRCDEQSEWYPD----IDDIRSKIT---  279 (517)
T ss_pred             HHHHHHhC--CCCCEEEEcCCCCcCHHHHHHHCCC-------------EEEEeecCcccCCCCC----HHHHHHhcC---
Confidence            99988653  3668899999999887654433322             2222211111112212    467777664   


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcc--e---eeecccc
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPD--I---VTMAKGI  323 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pD--i---vt~sK~l  323 (477)
                      ++..+.++++| +|++| .+.+++.+++|.++|++||++||+||+|..|.+.|..+..+..  ..+|  +   -+|||.+
T Consensus       280 ~~~k~i~i~nP-~NPTG-~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~--~~~~~~vi~~~S~SK~~  355 (517)
T PRK13355        280 SRTKAIVIINP-NNPTG-ALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIAS--LAPDLFCVTFSGLSKSH  355 (517)
T ss_pred             cCceEEEEECC-CCCCC-cCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHH--hCCCCeEEEEecchhhc
Confidence            23334556666 55666 4568999999999999999999999999988665521222211  1233  2   3589999


Q ss_pred             c-CccceEEEEeC--HHH----HHhhcccccccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhC
Q 011777          324 G-NGLPLGAVVTT--PEI----ANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERH  395 (477)
Q Consensus       324 g-~G~pig~v~~~--~~~----~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~  395 (477)
                      + .|||+||++++  +++    ++.+... ....++.|.+++.++.++|+.... +++.+..++..+. ++.+.+...+.
T Consensus       356 ~~~G~RiG~~i~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~-r~~l~~~L~~~  433 (517)
T PRK13355        356 MIAGYRIGWMILSGNKRIAKDYIEGLNML-ANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQ-RELVYNALNAI  433 (517)
T ss_pred             cCcccceEEEEeeCchhhHHHHHHHHHHH-hcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHHH-HHHHHHHHhcC
Confidence            7 59999999954  443    3333211 223356778888888888853111 2232222222221 33343333344


Q ss_pred             CCceeeeccceeE-EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHH
Q 011777          396 DIIGDVRGRGLMV-GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDAL  470 (477)
Q Consensus       396 ~~~~~v~g~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l  470 (477)
                      +.+....+.|.|+ |+.+.....   +.......+.+.|.++||++.|+..+    .+++||+.  ..+++++++++++|
T Consensus       434 ~g~~~~~p~g~fy~~~~l~~~~~---~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~--~~~~~~l~~a~~rl  508 (517)
T PRK13355        434 PGISAVKPKAAFYIFPKIDVKKF---NIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVY--LPRLEDLEDAMDRL  508 (517)
T ss_pred             CCcccCCCCeeeEEEeecCcccC---CCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEe--CCCHHHHHHHHHHH
Confidence            3344455666654 445532100   00012234556778899999998544    47899975  57899999999999


Q ss_pred             HHHHhh
Q 011777          471 DYSMSK  476 (477)
Q Consensus       471 ~~~l~~  476 (477)
                      .+++.+
T Consensus       509 ~~~~~~  514 (517)
T PRK13355        509 ADFFSY  514 (517)
T ss_pred             HHHHHH
Confidence            998864

>PRK07777 aminotransferase; Validated

Probab=99.93  E-value=1.1e-23  Score=213.35  Aligned_cols=340  Identities=15%  Similarity=0.076  Sum_probs=211.3

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhCCCC--CC-EEEEeCChHHHHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKMPGN--LK-VVYFVNSGTEANELA  171 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~~~~--~~-~v~~~~sGseA~~~A  171 (477)
                      .++|+..|.....   .++.+.+++.+.+....  +....+..+.+..+++.+.+.++.+  .+ +|++|+||++|+.++
T Consensus        25 ~~i~l~~g~p~~~---~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~  101 (387)
T PRK07777         25 GAVNLGQGFPDED---GPPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAA  101 (387)
T ss_pred             CeEEccCCCCCCC---CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHH
Confidence            5688888775432   24678888877665421  1111222334455555555544432  33 699999999999998


Q ss_pred             HHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcC-CCCCCCHHHHHHHHHHHHhccCCC
Q 011777          172 MLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYH-GSFGSDAARYAQDLQDHIDFGTSG  250 (477)
Q Consensus       172 l~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~  250 (477)
                      +...  ..+++.|++..++|++........             +...+.++.... ..+..|    ++++++.+.    +
T Consensus       102 ~~~~--~~~gd~vli~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~~d----~~~l~~~~~----~  158 (387)
T PRK07777        102 VLGL--VEPGDEVLLIEPYYDSYAAVIAMA-------------GAHRVPVPLVPDGRGFALD----LDALRAAVT----P  158 (387)
T ss_pred             HHHh--cCCCCEEEEeCCCchhhHHHHHHC-------------CCEEEEeecCCccCCCcCC----HHHHHHhcC----c
Confidence            8744  235678999999998764332222             111111111100 011111    466776664    3


Q ss_pred             CeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccc-cC---CCcceeeeccccc-C
Q 011777          251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET-QG---VIPDIVTMAKGIG-N  325 (477)
Q Consensus       251 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~-~g---v~pDivt~sK~lg-~  325 (477)
                      ++.+|++++.+|++|. .++.+.+++|.++|++|++++|+||+|.+|...+..+..+.. .+   ...-+.+|||.+| .
T Consensus       159 ~~~~v~l~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~  237 (387)
T PRK07777        159 RTRALIVNSPHNPTGT-VLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVT  237 (387)
T ss_pred             ccEEEEEcCCCCCCCc-cCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCc
Confidence            5667777776778885 457888999999999999999999999987654422222221 12   1222447999999 6


Q ss_pred             ccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeec
Q 011777          326 GLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRG  403 (477)
Q Consensus       326 G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g  403 (477)
                      |+|+||+++++++++.+.......+++.+.+.+.++..+++..+.  +.+.+.++++.+.+.+.|++    .+.......
T Consensus       238 GlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~  313 (387)
T PRK07777        238 GWKIGWACGPAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAE----AGFEVHDSA  313 (387)
T ss_pred             CceeEEEecCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHh----CCCCccCCC
Confidence            999999999999988877655555666666667666666653211  22344555555555555544    232111222


Q ss_pred             cceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC-------CCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          404 RGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH-------GNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       404 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~-------~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      .|.++|+++.....      ....++++.|+ ++||.+.|+..+       .+++||+..  .+++++++++++|.+++.
T Consensus       314 g~~~~~~~~~~~~~------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~--~~~~~l~~~l~~l~~~~~  385 (387)
T PRK07777        314 GTYFLCADPRPLGY------DDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFC--KRDDTLDEAIRRLRALRG  385 (387)
T ss_pred             cceEEEecccccCC------CCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEec--CCHHHHHHHHHHHHHHhc
Confidence            35566766531100      02456788886 579999887432       358999754  579999999999998764

>PRK08363 alanine aminotransferase; Validated

Probab=99.93  E-value=1.8e-23  Score=212.70  Aligned_cols=348  Identities=13%  Similarity=-0.010  Sum_probs=209.4

Q ss_pred             CCCEEEeecCCcccc-cCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHHH
Q 011777           94 NGRRYLDAFAGIVTV-SCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEAN  168 (477)
Q Consensus        94 dG~~ylD~~~g~~~~-~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA~  168 (477)
                      +|..++|+..|.+.. .++ .++.+.+++.+.+....  +....+..+.++.+++.+....+  .+.++|++|+|+++|+
T Consensus        28 ~~~~~i~l~~g~p~~~~~~-p~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al  106 (398)
T PRK08363         28 KGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEAL  106 (398)
T ss_pred             cCCCeEEEeCCCCCcCCCC-CCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence            467899999988743 455 57899999988776431  11111222334444444443322  4557899999999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      ..++....  .+++.|++.+++|.++...+...+             ...+.++......+..|    .+++++.+.   
T Consensus       107 ~~~~~~~~--~~gd~Vl~~~p~y~~~~~~~~~~g-------------~~~v~~~~~~~~~~~~d----~~~l~~~~~---  164 (398)
T PRK08363        107 QLIFGALL--DPGDEILIPGPSYPPYTGLVKFYG-------------GVPVEYRTIEEEGWQPD----IDDIRKKIT---  164 (398)
T ss_pred             HHHHHHhC--CCCCEEEEcCCCCcchHHHHHHcC-------------CEEEEeccccccCCcCC----HHHHHhhCC---
Confidence            99988652  366889999999987755433222             11121110000111111    356666654   


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcc---eeeeccccc-
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPD---IVTMAKGIG-  324 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pD---ivt~sK~lg-  324 (477)
                       .+++++++...+|++| ...+.+.+++|.++|++||+++|+||+|..|...+ .........-...   +-+|||.++ 
T Consensus       165 -~~~~~v~l~~p~NPtG-~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~-~~~~~~~~~~~~~vi~~~SfSK~~~~  241 (398)
T PRK08363        165 -EKTKAIAVINPNNPTG-ALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEG-KHVSPGSLTKDVPVIVMNGLSKVYFA  241 (398)
T ss_pred             -cceEEEEEECCCCCCC-cCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCC-cccCHHHcCcCCcEEEEecchhccCC
Confidence             2445555544466667 45578889999999999999999999998875544 2222211111112   337999976 


Q ss_pred             CccceEEEEe--CHHHHHhhcccc---cccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCce
Q 011777          325 NGLPLGAVVT--TPEIANVMAQKI---QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIG  399 (477)
Q Consensus       325 ~G~pig~v~~--~~~~~~~~~~~~---~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~  399 (477)
                      .|+|+||+++  ++++++.+....   ...+++.+.+++.++.++|+.  .+++.++.++..+..++.+.+...+++.+.
T Consensus       242 ~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~  319 (398)
T PRK08363        242 TGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTG--PMDYLEEYMKKLKERRDYIYKRLNEIPGIS  319 (398)
T ss_pred             ccceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence            6999999997  666655543221   113467788888888888853  233333333333333333333333343333


Q ss_pred             eeeccce-eEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          400 DVRGRGL-MVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       400 ~v~g~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      ..++.|. ++|+.+.....   .  .....+.+.|.++||.+.++..+    .+++||+.  ..+++++++++++|.+++
T Consensus       320 ~~~p~g~~~~~~~l~~~~~---~--~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~--~~~~~~l~~~l~~l~~~~  392 (398)
T PRK08363        320 TTKPQGAFYIFPRIEEGPW---K--DDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVF--LPPVEILEEAMDRFEEFM  392 (398)
T ss_pred             ecCCCeEEEEEEEeccCCC---C--CHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEe--cCCHHHHHHHHHHHHHHH
Confidence            3344454 44555532100   0  11233456678899999987543    36899975  467899999999999887


Q ss_pred             hh
Q 011777          475 SK  476 (477)
Q Consensus       475 ~~  476 (477)
                      ++
T Consensus       393 ~~  394 (398)
T PRK08363        393 RE  394 (398)
T ss_pred             HH
Confidence            64

>PRK07550 hypothetical protein; Provisional

Probab=99.93  E-value=1.3e-23  Score=212.94  Aligned_cols=341  Identities=15%  Similarity=0.081  Sum_probs=212.5

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc---ccccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ---HATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEAN  168 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~---~~~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA~  168 (477)
                      .|..++||..+...  +. .++.+.+++.+.+....   +....+..+.+..+++.+.+..+  .+.++|++|+|+++|+
T Consensus        27 ~~~~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al  103 (386)
T PRK07550         27 ADGPLIDLSQAVPG--YP-PPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAF  103 (386)
T ss_pred             cCCCeEEeCCCCCC--CC-CCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHH
Confidence            35567898887753  22 36788888887664211   11112334455666666665533  3457899999999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      ..++++..  .+++.|++.+++|.+.......             .|...++++......+..|    .++++++++   
T Consensus       104 ~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~-------------~g~~~~~v~~~~~~~~~~~----~~~l~~~~~---  161 (386)
T PRK07550        104 WAAMVTLA--GAGDEVILPLPWYFNHKMWLDM-------------LGIRPVYLPCDEGPGLLPD----PAAAEALIT---  161 (386)
T ss_pred             HHHHHHhc--CCCCEEEEcCCCCcchHHHHHh-------------cCCEEEEEecCCCcCCCCC----HHHHHHHhc---
Confidence            99888653  3567899999999766432221             1333333322111111111    467887776   


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc-cccc---CCCcceeeeccccc
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG-FETQ---GVIPDIVTMAKGIG  324 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~-~~~~---gv~pDivt~sK~lg  324 (477)
                      .+..+.+++.| +|++|. .++.+.+++|.++|++||+++|+||+|.+|...+..... +...   .....+.+|||.++
T Consensus       162 ~~~~~v~~~~P-~NPtG~-~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g  239 (386)
T PRK07550        162 PRTRAIALVTP-NNPTGV-VYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYA  239 (386)
T ss_pred             ccCcEEEEeCC-CCCCCc-ccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhcc
Confidence            22334455555 456664 557889999999999999999999999987433211111 1111   11233457999999


Q ss_pred             -CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceee
Q 011777          325 -NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDV  401 (477)
Q Consensus       325 -~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v  401 (477)
                       .|+|+||+++++++++.+.......+.+.+.+++.++..+++.+++  ++..+.++++.+.+.+.|.+    ++.+...
T Consensus       240 ~~G~RiG~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~  315 (386)
T PRK07550        240 LTGHRVGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFAR----LPGWELL  315 (386)
T ss_pred             CcccceEeeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHh----CCCceeC
Confidence             7999999999999988877655555666788888888887764321  12233344444444444433    3222222


Q ss_pred             eccceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          402 RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       402 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      ...|.++|+.+...       .....++++.|+ ++||.+.|+..+    .+++||++.. .+++++++++++|.++
T Consensus       316 ~~g~~~~~~~~~~~-------~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~~~~~~~~l~~~  384 (386)
T PRK07550        316 ASGAYFAYVRHPFP-------DRPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFAN-ADVAGIGELVERLRAF  384 (386)
T ss_pred             CCceEEEEecCCCC-------CCCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeec-CCHHHHHHHHHHHHhh
Confidence            23356667766320       112456777764 679999987432    4689998753 4789999999999864

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=8.8e-24  Score=213.19  Aligned_cols=325  Identities=15%  Similarity=0.123  Sum_probs=207.3

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAML  173 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~  173 (477)
                      .+...||+..|..  ++| .+|.+.+++.+. ..    ...|+.+...+|++.++++++.+.++|++++|+++++..+++
T Consensus        50 ~~~~~i~l~~n~~--p~~-~~~~v~~a~~~~-~~----~~~Yp~~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~  121 (380)
T PLN03026         50 KPEDIVKLDANEN--PYG-PPPEVLEALGNM-KF----PYVYPDPESRRLRAALAEDSGLESENILVGCGADELIDLLMR  121 (380)
T ss_pred             CccceEEccCCCC--CCC-CCHHHHHHHHhh-Hh----hccCCCCCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHH
Confidence            4668899887653  455 578888887642 11    123455556789999999988777899999999999999887


Q ss_pred             HHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCee
Q 011777          174 MARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA  253 (477)
Q Consensus       174 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a  253 (477)
                      ...  .+++.|++.+++|..+.......             |...+.+|...  .+..|    .+++++.+.   ..+++
T Consensus       122 ~~~--~~gd~Vlv~~P~y~~y~~~~~~~-------------g~~~~~v~~~~--~~~~d----~~~l~~~~~---~~~~~  177 (380)
T PLN03026        122 CVL--DPGDKIIDCPPTFGMYVFDAAVN-------------GAEVIKVPRTP--DFSLD----VPRIVEAVE---THKPK  177 (380)
T ss_pred             Hhc--CCCCEEEEcCCChHHHHHHHHHc-------------CCEEEEeecCC--CCCcC----HHHHHHHHh---ccCCc
Confidence            553  35678999999987543322211             22222222211  12111    467777663   13456


Q ss_pred             EEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc-ccccCCCcceeeeccccc-CccceEE
Q 011777          254 GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG-FETQGVIPDIVTMAKGIG-NGLPLGA  331 (477)
Q Consensus       254 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~-~~~~gv~pDivt~sK~lg-~G~pig~  331 (477)
                      +|++...+|++|.+.+    .+++.++++.. +++|+||+|..|...+ .... .+..+...-+-+|||.+| .|+|+||
T Consensus       178 ~v~l~~P~NPTG~~~~----~~~l~~l~~~~-~~vi~DeaY~~~~~~~-~~~~~~~~~~~viv~~SfSK~~glaGlRiGy  251 (380)
T PLN03026        178 LLFLTSPNNPDGSIIS----DDDLLKILELP-ILVVLDEAYIEFSTQE-SRMKWVKKYDNLIVLRTFSKRAGLAGLRVGY  251 (380)
T ss_pred             EEEEeCCCCCCCCCCC----HHHHHHHHhcC-CEEEEECcchhhcCCc-chHHHHHhCCCEEEEecchHhhcCcccccee
Confidence            6666666777786654    45555566543 8999999999885433 2211 111122122337999999 7999999


Q ss_pred             EEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEE
Q 011777          332 VVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM  410 (477)
Q Consensus       332 v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i  410 (477)
                      +++++++++.+....  ..++.+.+++.++.++|+..+. ++..+.+++.++++.+.|+    +++.+...+..|.|+++
T Consensus       252 ~~~~~~~i~~l~~~~--~~~~~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~----~~~~~~~~p~~~~f~~~  325 (380)
T PLN03026        252 GAFPLSIIEYLWRAK--QPYNVSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLK----EVPFLEPYPSDANFILC  325 (380)
T ss_pred             eecCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH----HCCCCeECCCCCeEEEE
Confidence            999999998876543  3467788889888888853110 2233334444444444444    33433223456778888


Q ss_pred             EEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--CCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          411 ELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--HGNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      .+...        ....++.+.|+++||.+.++..  ..+++||+..   ++++++++++.|+++
T Consensus       326 ~~~~~--------~~~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~~---~~~~~~~l~~al~~~  379 (380)
T PLN03026        326 RVTSG--------RDAKKLKEDLAKMGVMVRHYNSKELKGYIRVSVG---KPEHTDALMEALKQL  379 (380)
T ss_pred             ECCCC--------CCHHHHHHHHHHCCeEEEECCCCCCCCEEEEecC---CHHHHHHHHHHHHHh
Confidence            76321        1245688888899999987632  2468999644   678899999988764

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.93  E-value=7e-24  Score=212.42  Aligned_cols=323  Identities=16%  Similarity=0.100  Sum_probs=207.5

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCC---CCCCEEEEeCChHHHHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMP---GNLKVVYFVNSGTEANEL  170 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~---~~~~~v~~~~sGseA~~~  170 (477)
                      ++..++|+.+|...   ...+|.+.+++.+......+....+..+.+.++++.+.+..+   .+.++|++|+|+++++..
T Consensus        19 ~~~~~i~l~~~~p~---~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~   95 (357)
T TIGR03539        19 HPDGIVDLSVGTPV---DPVPPLIRAALAAAADAPGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAW   95 (357)
T ss_pred             CCCCeEEccCCCCC---CCCCHHHHHHHHHHHhhCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHH
Confidence            34567888887643   234788899887765433333333344566777777766543   456899999999999998


Q ss_pred             HHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCC
Q 011777          171 AMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG  250 (477)
Q Consensus       171 Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~  250 (477)
                      ++.+.. ..+++.|++.+++|.++.......             |...+.+++             .+.+    .   ..
T Consensus        96 ~~~~l~-~~~gd~Vl~~~p~y~~~~~~~~~~-------------g~~~~~v~~-------------~~~l----~---~~  141 (357)
T TIGR03539        96 LPTLLG-LGPGDTVVIPELAYPTYEVGALLA-------------GATPVAADD-------------PTEL----D---PV  141 (357)
T ss_pred             HHHHHc-CCCCCEEEECCCCcHHHHHHHHhc-------------CCEEeccCC-------------hhhc----C---cc
Confidence            776542 235678999999998775443222             222222211             1222    1   13


Q ss_pred             CeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc-ccc--cC----CCcceeeecccc
Q 011777          251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG-FET--QG----VIPDIVTMAKGI  323 (477)
Q Consensus       251 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~-~~~--~g----v~pDivt~sK~l  323 (477)
                      ++++|+++..+|++| ...+.+.+++|.++|++||+++|+||+|.+|.+.+ .... ++.  .+    ...-+-+|||.+
T Consensus       142 ~~~~v~~~~p~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~~~~vi~~~S~SK~~  219 (357)
T TIGR03539       142 GPDLIWLNSPGNPTG-RVLSVDELRAIVAWARERGAVVASDECYLELGWEG-RPVSILDPRVCGGDHTGLLAVHSLSKRS  219 (357)
T ss_pred             CccEEEEeCCCCCcC-ccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCC-CCccceecccCCCccccEEEEecccccc
Confidence            567777766667777 45678889999999999999999999999887654 2221 111  01    111223799999


Q ss_pred             c-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeee
Q 011777          324 G-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR  402 (477)
Q Consensus       324 g-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~  402 (477)
                      + .|+|+||+++++++++.+........++.+.+++.++.++|+.   ++..++.++..+..++.+.+...+++......
T Consensus       220 ~~~G~R~G~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~p  296 (357)
T TIGR03539       220 NLAGYRAGFVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAALGD---DGHVAEQKARYAARRAQLKPALEKAGFRIDHS  296 (357)
T ss_pred             CCCceeEEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence            6 6999999999999988876554445677888888888887752   23333333333333333433333334221222


Q ss_pred             ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHH
Q 011777          403 GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDAL  470 (477)
Q Consensus       403 g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l  470 (477)
                      ..|.++|+.+..          ...++.+.|.++||.+.|+..+    .+++||+..  .+++++++++++|
T Consensus       297 ~~~~~~~~~~~~----------~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~--~~~~~i~~~~~~l  356 (357)
T TIGR03539       297 EAGLYLWATRGE----------DAWDTVDRLAELGILVAPGDFYGPAGSQHVRVALT--ATDERIAAAVARL  356 (357)
T ss_pred             CccEEEEEECCC----------CHHHHHHHHHhCCEEECCccccCCCCCCeEEEEec--CCHHHHHHHHHhh
Confidence            235566665411          1346778889999999987432    478999765  4789999999876

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.93  E-value=2.6e-23  Score=210.78  Aligned_cols=344  Identities=13%  Similarity=0.047  Sum_probs=216.1

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhCCC--C-CCEEEEeCChHHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKMPG--N-LKVVYFVNSGTEANEL  170 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~~~--~-~~~v~~~~sGseA~~~  170 (477)
                      ..+|||..|...  ++. ++.+.+++.+.+....  +....+..+.++.+++.+....+.  . .++|++|+|+++|+..
T Consensus        30 ~~~i~l~~~~~~--~~~-~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~  106 (391)
T PRK07309         30 PGILKLTLGEPD--FTT-PDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSA  106 (391)
T ss_pred             CCeEEcCCCCCC--CCC-CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence            458998887753  453 6788898888775421  111112234445555555443332  2 3589999999999999


Q ss_pred             HHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCC
Q 011777          171 AMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG  250 (477)
Q Consensus       171 Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~  250 (477)
                      +++...  .+++.|++.+++|.++.......             |...+.++... ..+..|    .++++++++.. .+
T Consensus       107 ~~~~~~--~~gd~vl~~~p~y~~~~~~~~~~-------------g~~~~~~~~~~-~~~~~d----~~~l~~~~~~~-~~  165 (391)
T PRK07309        107 SLTAIL--EPGDKVLLPAPAYPGYEPIVNLV-------------GAEIVEIDTTE-NDFVLT----PEMLEKAILEQ-GD  165 (391)
T ss_pred             HHHHhc--CCCCEEEEeCCCCcchHHHHHHc-------------CCEEEEEecCC-cCCcCC----HHHHHHHhhcc-CC
Confidence            988653  36678999999998875433222             12222222111 111112    47787777532 23


Q ss_pred             CeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc--CCCcceeeeccccc-Ccc
Q 011777          251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ--GVIPDIVTMAKGIG-NGL  327 (477)
Q Consensus       251 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~--gv~pDivt~sK~lg-~G~  327 (477)
                      +++++++...+|++| ...+.+.+++|.++|++||+++|+||+|..|...|.....+...  +...-+-+|||.+| .|+
T Consensus       166 ~~~~i~l~~P~NPtG-~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~Gl  244 (391)
T PRK07309        166 KLKAVILNYPANPTG-VTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGW  244 (391)
T ss_pred             CeEEEEEECCCCCCC-cCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCccc
Confidence            566676664466667 55678889999999999999999999999886544222222111  11122337999998 799


Q ss_pred             ceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccc
Q 011777          328 PLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG  405 (477)
Q Consensus       328 pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g  405 (477)
                      |+||+++++++++.+.......+.+.+++++.++.+.|+....  ..+.++++++.+++.+.|++    ++........|
T Consensus       245 RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~p~gg  320 (391)
T PRK07309        245 RIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTD----LGFKIIKPDGA  320 (391)
T ss_pred             eeEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHH----CCCeecCCCee
Confidence            9999999999998887543334456788888888888864221  22334455555555555443    33222222335


Q ss_pred             eeEEEEEeeCCCCCCccHHHHHHHHHH-HHHcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          406 LMVGMELVTDRKEKTPAKAETAVLFEK-LRELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       406 ~~~~i~~~~~~~~~~~~~~~~~~~~~~-l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .++|+.+....      .....++.+. +.++||.+.|+..+    +++|||+.+  .+++++++++++|.+++++
T Consensus       321 ~~~~~~l~~~~------~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~i~~l~~~~~~  388 (391)
T PRK07309        321 FYIFAKIPAGY------NQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYA--ASMETIKEAMKRLKEYMEE  388 (391)
T ss_pred             EEEEEECCCCC------CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence            56676652210      0113456654 55789999987533    469999765  4789999999999998865

>PRK07683 aminotransferase A; Validated

Probab=99.93  E-value=2.9e-23  Score=210.17  Aligned_cols=338  Identities=12%  Similarity=0.060  Sum_probs=209.9

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhCC--CCCC-EEEEeCChHHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKMP--GNLK-VVYFVNSGTEANEL  170 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~~--~~~~-~v~~~~sGseA~~~  170 (477)
                      ..++|+..|.+.  ++ .++.+.+++.+.++...  +....+..+.+.++++.+.+..+  .+.+ +|++|+|+++|+..
T Consensus        28 ~~~i~l~~~~p~--~~-~~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~  104 (387)
T PRK07683         28 DNLISLTIGQPD--FP-TPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDI  104 (387)
T ss_pred             CCeEEecCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence            457888877643  33 36789999998876421  11122334455566666654433  3455 89999999999999


Q ss_pred             HHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCC
Q 011777          171 AMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG  250 (477)
Q Consensus       171 Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~  250 (477)
                      +++...  ..++.|++..++|.++.......+             ...+.++... ..+..|    .+++++.+.    .
T Consensus       105 ~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~g-------------~~~~~~~~~~-~~~~~~----~~~l~~~~~----~  160 (387)
T PRK07683        105 AFRTIL--EPGTEVILPAPIYPGYEPIIRLCG-------------AKPVFIDTRS-TGFRLT----AEALENAIT----E  160 (387)
T ss_pred             HHHHhC--CCCCEEEEcCCCccchHHHHHHcC-------------CEEEEeecCc-ccCCCC----HHHHHHhcC----c
Confidence            987653  356789999999987655443322             2222221110 112111    366777664    2


Q ss_pred             CeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cccCC---Ccceeeeccccc-C
Q 011777          251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQGV---IPDIVTMAKGIG-N  325 (477)
Q Consensus       251 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~gv---~pDivt~sK~lg-~  325 (477)
                      +++++++...++++| ..++++.+++|.++|+++|+++|+||+|..|.+.+ ....+ ...+.   ..-+.+|||.++ .
T Consensus       161 ~~~~i~i~~p~NPtG-~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~vi~~~s~SK~~~~p  238 (387)
T PRK07683        161 KTRCVVLPYPSNPTG-VTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQ-PHTSIAHFPEMREKTIVINGLSKSHSMT  238 (387)
T ss_pred             CceEEEEeCCCCCCC-cCCCHHHHHHHHHHHHHcCeEEEEecccccceeCC-CcCChhhccCCcCCeEEEeeccccccCc
Confidence            345555555566677 45688889999999999999999999999875433 22222 11122   222347999999 7


Q ss_pred             ccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeec
Q 011777          326 GLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRG  403 (477)
Q Consensus       326 G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g  403 (477)
                      |+|+||+++++++++.+.........+.+.+++.++.+.|+....  +...++++++.+.+.+.|.+    .+. ....+
T Consensus       239 GlRiG~i~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~-~~~~~  313 (387)
T PRK07683        239 GWRIGFLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLIS----MGL-DVEKP  313 (387)
T ss_pred             cceeEEEEcCHHHHHHHHHHHHhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH----cCC-cccCC
Confidence            999999999999988876543333344567888888877753221  12233334444444444433    332 22233


Q ss_pred             c-ceeEEEEEeeCCCCCCccHHHHHHHHH-HHHHcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          404 R-GLMVGMELVTDRKEKTPAKAETAVLFE-KLRELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       404 ~-g~~~~i~~~~~~~~~~~~~~~~~~~~~-~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      . |.++|+.+....       ....++.. .+.++||.+.++..+    .+++||+..  .+++++.+++++|.+++.+
T Consensus       314 ~~~~~~~~~~~~~~-------~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~--~~~~~~~~al~~l~~~l~~  383 (387)
T PRK07683        314 TGAFYLFPSIGHFT-------MSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYA--YSIETLKEGLDRLEAFLQQ  383 (387)
T ss_pred             CeeEEEEEecccCC-------CCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence            3 455565553210       11234544 457789999987432    478999654  5899999999999998753

>PRK08175 aminotransferase; Validated

Probab=99.93  E-value=2.1e-23  Score=211.80  Aligned_cols=346  Identities=12%  Similarity=0.077  Sum_probs=216.1

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhc---cccccccCChHHHHHHHHHHhhC--CCCCC-EEEEeCChHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL---QHATTIYLHHAIADFAEALASKM--PGNLK-VVYFVNSGTEAN  168 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~---~~~~~~~~~~~~~~l~~~La~~~--~~~~~-~v~~~~sGseA~  168 (477)
                      |+.++||..|..   .+..++.+.+++.+.+...   .+....+..+.+..+++.+.+..  +.+.+ ++++|+|+++++
T Consensus        28 ~~~~i~l~~g~p---~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l  104 (395)
T PRK08175         28 GEDIIDFSMGNP---DGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGL  104 (395)
T ss_pred             CCCeEEcCCCCC---CCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHH
Confidence            456788877653   3345677888887766432   12212223345556666665543  23344 799999999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      ..++....  .+++.|++.+++|..........             |...+.++......       ..++++++++.. 
T Consensus       105 ~~~~~~~~--~~gd~Vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~-------~~~~l~~~l~~~-  161 (395)
T PRK08175        105 AHLMLATL--DHGDTVLVPNPSYPIHIYGAVIA-------------GAQVRSVPLVEGVD-------FFNELERAIRES-  161 (395)
T ss_pred             HHHHHHhC--CCCCEEEEcCCCCcchHHHHHHc-------------CCeEEEEecccCCC-------cHHHHHHHHhhc-
Confidence            98776553  35678999999997764443222             22222222211111       146777777632 


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cc---cCCCcceeeeccccc
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ET---QGVIPDIVTMAKGIG  324 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~---~gv~pDivt~sK~lg  324 (477)
                      ..+++++++...++++| ...+.+.+++|.++|++||+++|+||+|..+...+.....+ ..   .+...-+.+|||.+|
T Consensus       162 ~~~~~~v~i~~p~NPtG-~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g  240 (395)
T PRK08175        162 YPKPKMMILGFPSNPTA-QCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYN  240 (395)
T ss_pred             cCCceEEEEeCCCCCCC-CCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeecccccc
Confidence            23566777665466677 56688889999999999999999999998875544111111 11   122223447999997


Q ss_pred             -CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeec
Q 011777          325 -NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRG  403 (477)
Q Consensus       325 -~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g  403 (477)
                       .|+|+||+++++++++.+........++.+.+.+.++.++++.  .+.+.+++++..+..++.+.+..++++.......
T Consensus       241 ~pGlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~  318 (395)
T PRK08175        241 MAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEG--DQQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMPK  318 (395)
T ss_pred             CcchhheeeeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence             6999999999999999887654444566677788888777753  2333334443333333333333333443222233


Q ss_pred             cceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          404 RGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       404 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .|+++|+++.....     .....++++.++ ++||.+.++..+    .+++||+.  ..+++.+.+++++|.+++.+
T Consensus       319 ~g~~i~i~l~~~~~-----~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~--~~~~~~~~~al~~l~~~l~~  389 (395)
T PRK08175        319 ASMYVWAKIPEPYA-----AMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFAL--IENRDRIRQAIRGIKAMFRA  389 (395)
T ss_pred             EEEEEEEECCcccC-----CCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEe--CCCHHHHHHHHHHHHHHHHh
Confidence            57888988743210     001356766655 689999987432    36899975  46899999999999998864

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.93  E-value=2.6e-23  Score=211.03  Aligned_cols=335  Identities=14%  Similarity=0.039  Sum_probs=209.6

Q ss_pred             eCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-ccccccCChHHHHHHHHHHhhCC----CCC-CEEEEeCChH
Q 011777           92 DENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-HATTIYLHHAIADFAEALASKMP----GNL-KVVYFVNSGT  165 (477)
Q Consensus        92 d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-~~~~~~~~~~~~~l~~~La~~~~----~~~-~~v~~~~sGs  165 (477)
                      +..|+.++||..|..  .++ .++.+++++.+.+.... +....+..+.+..+++.+.+..+    .+. ++|++|+|++
T Consensus        24 ~~~~~~~i~l~~~~p--~~~-~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~  100 (393)
T TIGR03538        24 PPASKPPIALSIGEP--KHP-TPAFVLEALRENLHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTR  100 (393)
T ss_pred             hhcCCCeEEecCCCC--CCC-CCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcH
Confidence            346778889887765  344 47889999988765422 22222334556666666665533    244 3799999999


Q ss_pred             HHHHHHHHHHHhccCCc--eEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHH
Q 011777          166 EANELAMLMARLSTGNL--GMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDH  243 (477)
Q Consensus       166 eA~~~Al~~ar~~~~~~--~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~  243 (477)
                      +|+..++++...  +++  .|++.+++|.++.......             |...+.+|......+..|    .+++++.
T Consensus       101 ~al~~~~~~l~~--~gd~~~vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~  161 (393)
T TIGR03538       101 EALFAFAQAVIN--PGQAPLVVMPNPFYQIYEGAALLA-------------GAEPYFLNCTAENGFLPD----FDAVPES  161 (393)
T ss_pred             HHHHHHHHHHcC--CCCcceEEecCCCCcchHHHHHhc-------------CCeEEEeeccccCCCCCC----HHHHHHH
Confidence            999999886543  333  4888889998765433222             222222222111112212    3667666


Q ss_pred             HhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC-CCcc----ccccC-----CC
Q 011777          244 IDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS-HYWG----FETQG-----VI  313 (477)
Q Consensus       244 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~-~~~~----~~~~g-----v~  313 (477)
                      +.    +++++|++...+|++| .+.+.+.+++|.++|++|+++||+||+|..|.+.+. ....    ....+     ..
T Consensus       162 ~~----~~~k~i~l~~p~NPtG-~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  236 (393)
T TIGR03538       162 VW----RRCQLLFVCSPGNPTG-AVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRC  236 (393)
T ss_pred             Hh----hcceEEEEeCCCCCcC-cccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccE
Confidence            54    2455555544566677 456889999999999999999999999998754321 1111    11111     11


Q ss_pred             cceeeeccccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHH----HHHHHHHHHHHH
Q 011777          314 PDIVTMAKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAH----CADVGSHLLGRL  388 (477)
Q Consensus       314 pDivt~sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~----~~~~~~~l~~~L  388 (477)
                      .-+-+|||.++ .|+|+||+++++++++.+.......+++.+++.+.++.+++.   .+++.++    +++..+.+.+.|
T Consensus       237 i~i~S~SK~~~~~GlRvG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~L  313 (393)
T TIGR03538       237 LVFHSLSKRSNLPGLRSGFVAGDAEILKAFLRYRTYHGCAMPIPTQLASIAAWN---DEQHVRENRALYREKFAAVLEIL  313 (393)
T ss_pred             EEEecchhhcCCcccceEEEecCHHHHHHHHHHHHhhccCcCHHHHHHHHHHhc---ChHHHHHHHHHHHHHHHHHHHHH
Confidence            22337999987 599999999999998887654433456678888888877764   2333333    333333444444


Q ss_pred             HHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----------CCEEEEeCCCC
Q 011777          389 RTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----------GNVFRIKPPMC  457 (477)
Q Consensus       389 ~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----------~~~iRi~p~~~  457 (477)
                      ++.   .+  ...+..|+++|+++..          ...++.+.|+ ++||.+.|+..+          .+++||++  .
T Consensus       314 ~~~---~~--~~~p~gg~f~~~~~~~----------~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~--~  376 (393)
T TIGR03538       314 GQV---LD--LELPDAGFYLWPKVPG----------DDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIAL--V  376 (393)
T ss_pred             Hhh---Cc--ccCCCeeEEEEEECCC----------CHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEe--c
Confidence            332   11  1234457788888730          1245777765 579999887543          36899964  4


Q ss_pred             CcHHHHHHHHHHHHHH
Q 011777          458 FTKDDADFLVDALDYS  473 (477)
Q Consensus       458 ~t~e~i~~~l~~l~~~  473 (477)
                      .+++++++++++|.+.
T Consensus       377 ~~~~~l~~~l~~l~~~  392 (393)
T TIGR03538       377 APLEECVEAAERIRSF  392 (393)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            5799999999999874

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.93  E-value=2.6e-23  Score=211.53  Aligned_cols=337  Identities=16%  Similarity=0.151  Sum_probs=203.6

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccC-ChHHHHHHHHHHhhC-----CCCCCEEEEeCChHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL-HHAIADFAEALASKM-----PGNLKVVYFVNSGTEANE  169 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~-~~~~~~l~~~La~~~-----~~~~~~v~~~~sGseA~~  169 (477)
                      ..++||..|...  ++ .++.+.+++.+......    .|. .....++++.+++++     +.+.++|++|+||++|+.
T Consensus        30 ~~~i~l~~~~~~--~~-~~~~~~~a~~~~~~~~~----~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~  102 (397)
T PRK07568         30 IKVYHLNIGQPD--IK-TPEVFFEAIKNYDEEVL----AYSHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAIL  102 (397)
T ss_pred             CCEEEecCCCCC--CC-CCHHHHHHHHHHhcCCc----CcCCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHH
Confidence            356777766642  22 36788888876543221    121 122344444444443     345678999999999999


Q ss_pred             HHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCC
Q 011777          170 LAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS  249 (477)
Q Consensus       170 ~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~  249 (477)
                      .+++...  .+++.|++.+++|..+.......             |...++++......+..+.   .++++++++    
T Consensus       103 ~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~~g~~~~~---~~~l~~~~~----  160 (397)
T PRK07568        103 FAMMAIC--DPGDEILVPEPFYANYNGFATSA-------------GVKIVPVTTKIEEGFHLPS---KEEIEKLIT----  160 (397)
T ss_pred             HHHHHhc--CCCCEEEEecCCCccHHHHHHHc-------------CCEEEEeecCcccCCCCCC---HHHHHHhcC----
Confidence            9887653  35678999888887543321111             2222222221111111100   366777664    


Q ss_pred             CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cccCCCccee---eeccccc-
Q 011777          250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQGVIPDIV---TMAKGIG-  324 (477)
Q Consensus       250 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~gv~pDiv---t~sK~lg-  324 (477)
                      .++++|++...++++| ...+.+.+++|.++|+++|+++|+||+|.+|.+.+..+..+ ...+..+.++   +|||.++ 
T Consensus       161 ~~~~~v~i~~p~NPtG-~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~  239 (397)
T PRK07568        161 PKTKAILISNPGNPTG-VVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSA  239 (397)
T ss_pred             ccceEEEEECCCCCCC-ccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccC
Confidence            2455555444456666 56678889999999999999999999999987655222222 2222233333   7999999 


Q ss_pred             CccceEEEEeC-HHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeec
Q 011777          325 NGLPLGAVVTT-PEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRG  403 (477)
Q Consensus       325 ~G~pig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g  403 (477)
                      .|+|+||++++ +++++.+..... .+++.+.+.+.++.++|+..  +.+.+++++..+..++.+.+...+++.+....+
T Consensus       240 ~G~R~G~~~~~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p  316 (397)
T PRK07568        240 CGARIGCLISKNKELIAAAMKLCQ-ARLSPPTLEQIGAAALLDTP--ESYFDEVREEYKKRRDILYEELNKIPGVVCEKP  316 (397)
T ss_pred             CCcceEEEecCCHHHHHHHHHHhh-ccCCCCcHHHHHHHHHhhCC--HHHHHHHHHHHHHHHHHHHHHHhcCCCceecCC
Confidence            49999999985 678776654322 25677888888888888632  233333333333333333333333433333334


Q ss_pred             c-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHH------cCceeeccCCC-------CCEEEEeCCCCCcHHHHHHHHHH
Q 011777          404 R-GLMVGMELVTDRKEKTPAKAETAVLFEKLRE------LGVLVGKGGLH-------GNVFRIKPPMCFTKDDADFLVDA  469 (477)
Q Consensus       404 ~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~------~Gv~v~~~~~~-------~~~iRi~p~~~~t~e~i~~~l~~  469 (477)
                      . |+++|+.+...         ...++.+.|.+      +||.+.|+..+       .+++||+.  ..+++++++++++
T Consensus       317 ~g~~~~~~~l~~~---------~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~--~~~~~~~~~~~~~  385 (397)
T PRK07568        317 KGAFYIIAKLPVD---------DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAY--VLNEEDLKRAMEI  385 (397)
T ss_pred             CcceEEEEecCCC---------CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEE--eCCHHHHHHHHHH
Confidence            4 45667776321         13456666654      69999987432       36899975  4678999999999


Q ss_pred             HHHHHhh
Q 011777          470 LDYSMSK  476 (477)
Q Consensus       470 l~~~l~~  476 (477)
                      |.+++++
T Consensus       386 l~~~l~~  392 (397)
T PRK07568        386 LKEALEK  392 (397)
T ss_pred             HHHHHHH
Confidence            9998864

>PRK06855 aminotransferase; Validated

Probab=99.93  E-value=4.5e-23  Score=211.41  Aligned_cols=357  Identities=11%  Similarity=0.007  Sum_probs=209.5

Q ss_pred             CCEEEeecCCcccccCCC-CCHHHHHHHHHHHhhc---cccccccCChHHHHHHHHHHhhC--CCCCCEEEEeCChHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGH-CHPDVLNAIFEQSKLL---QHATTIYLHHAIADFAEALASKM--PGNLKVVYFVNSGTEAN  168 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh-~~p~v~~Av~~~l~~~---~~~~~~~~~~~~~~l~~~La~~~--~~~~~~v~~~~sGseA~  168 (477)
                      |+..+++..|.+.. .+. .++.+.+++.+.+...   .+....+..+.++.+++++.+..  +.+.++|++|+|+++|+
T Consensus        31 g~~~~~~~~G~p~~-~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al  109 (433)
T PRK06855         31 GVKITWENIGDPIA-KGEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAI  109 (433)
T ss_pred             cccccccccCCCcc-cCCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHH
Confidence            34455554443311 122 4677888888766432   12222334456667777776653  34567899999999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      ..++.+   ..+++.|++.+++|+++........            +...+.+|......+..|    +++|++.++.. 
T Consensus       110 ~~~~~l---~~~Gd~Vlv~~P~Y~~~~~~~~~~~------------g~~~v~v~~~~~~~~~~d----~~~l~~~~~~~-  169 (433)
T PRK06855        110 AKIYGL---LRREARVIGPSPAYSTHSSAEAAHA------------GYPPVTYRLDPENNWYPD----LDDLENKVKYN-  169 (433)
T ss_pred             HHHHHh---cCCCCeEEEeCCCCchHHHHHHHhc------------CCeEEEEecccccCCCCC----HHHHHHHHhcC-
Confidence            988752   3467889999999998643211111            111222211111112112    47888877521 


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-ccc-C-CCcceeeeccccc-
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQ-G-VIPDIVTMAKGIG-  324 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~-g-v~pDivt~sK~lg-  324 (477)
                      ++..++++++| +|++| .+++++.+++|.++|++||++||+||+|..|.+.+..+..+ ... + ...-+-+|||.++ 
T Consensus       170 ~~~~~i~l~~P-~NPTG-~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~  247 (433)
T PRK06855        170 PSIAGILLINP-DNPTG-AVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPW  247 (433)
T ss_pred             CCceEEEEECC-CCCCC-cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCC
Confidence            12234556666 55666 56789999999999999999999999999886655222221 111 1 1223347999998 


Q ss_pred             CccceEEEEeC-----H---HHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCC
Q 011777          325 NGLPLGAVVTT-----P---EIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHD  396 (477)
Q Consensus       325 ~G~pig~v~~~-----~---~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~  396 (477)
                      .|+|+||++++     +   ++++.+..... ...+.+.++|.++.++|+.-.-++++++.++..+..++.+.+...+++
T Consensus       248 pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~  326 (433)
T PRK06855        248 PGSRCGWIEVYNADKDEVFKKYINSILNAKM-IEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVP  326 (433)
T ss_pred             CcceEEEEEEeCCchhhHHHHHHHHHHHhhc-cccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            79999999973     2   23333322221 244567888988888875322233444444444444444444444443


Q ss_pred             Cceeeecc-ceeEEEEEeeCCC-----CCCc--cH------------HHHHHHH-HHHHHcCceeeccCCCC---CEEEE
Q 011777          397 IIGDVRGR-GLMVGMELVTDRK-----EKTP--AK------------AETAVLF-EKLRELGVLVGKGGLHG---NVFRI  452 (477)
Q Consensus       397 ~~~~v~g~-g~~~~i~~~~~~~-----~~~~--~~------------~~~~~~~-~~l~~~Gv~v~~~~~~~---~~iRi  452 (477)
                      .+...++. |+++|+.+.....     .+..  +.            ....++. ..+.++||.+.|+..++   +.+||
T Consensus       327 ~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rl  406 (433)
T PRK06855        327 GLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNGFRV  406 (433)
T ss_pred             CeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCCceEE
Confidence            23323444 5777887743100     0000  00            0012333 45678899999985442   46899


Q ss_pred             eCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          453 KPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       453 ~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +... .++++|++++++|.+++++
T Consensus       407 s~~~-~~~~~i~~~~~~l~~~~~~  429 (433)
T PRK06855        407 TLLE-RDEEKFEWIYQTLAEKIEE  429 (433)
T ss_pred             EECC-CcHHHHHHHHHHHHHHHHH
Confidence            7654 5899999999999998864

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=5.8e-23  Score=205.28  Aligned_cols=322  Identities=17%  Similarity=0.132  Sum_probs=210.8

Q ss_pred             EEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHh
Q 011777           98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARL  177 (477)
Q Consensus        98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~  177 (477)
                      .+|+..|..  .++ .++.+++++.+.+....  ...|..+...++++.++++++.+.++|++++|+++++..+++... 
T Consensus        24 ~~~l~~~~~--~~~-~p~~~~~a~~~~~~~~~--~~~y~~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~-   97 (351)
T PRK14807         24 KYKMDANET--PFE-LPEEVIKNIQEIVKSSQ--VNIYPDPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFI-   97 (351)
T ss_pred             eeEccCCCC--CCC-CCHHHHHHHHHHhhcCc--ccCCCCccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhc-
Confidence            466665554  455 57899999988775321  223444556789999999987777899999999999998887652 


Q ss_pred             ccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEe
Q 011777          178 STGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIA  257 (477)
Q Consensus       178 ~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~  257 (477)
                       .+++.|++.+++|.++.......             |...+.++...  .++.|    .+++++.++   ..++++|++
T Consensus        98 -~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~v~~~~--~~~~d----~~~l~~~~~---~~~~k~v~l  154 (351)
T PRK14807         98 -NKGDVVIYPHPSFAMYSVYSKIA-------------GAVEIPVKLKE--DYTYD----VGSFIKVIE---KYQPKLVFL  154 (351)
T ss_pred             -CCCCEEEEeCCChHHHHHHHHHc-------------CCeEEEeecCC--CCCCC----HHHHHHHhh---ccCCCEEEE
Confidence             35678999999998654432222             22222222110  11112    467777775   235666666


Q ss_pred             cccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc-ccccCCCcceeeeccccc-CccceEEEEeC
Q 011777          258 ETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG-FETQGVIPDIVTMAKGIG-NGLPLGAVVTT  335 (477)
Q Consensus       258 epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~-~~~~gv~pDivt~sK~lg-~G~pig~v~~~  335 (477)
                      ...+|++|.+.+    .+++.++|++++.++|+||+|.+|.  +..... .+..+...-+-+|||.++ .|+|+||++++
T Consensus       155 ~~p~NPtG~~~~----~~~l~~l~~~~~~~~ivDe~y~~~~--~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~  228 (351)
T PRK14807        155 CNPNNPTGSVIE----REDIIKIIEKSRGIVVVDEAYFEFY--GNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVAN  228 (351)
T ss_pred             eCCCCCCCCCCC----HHHHHHHHHhCCCEEEEeCcchhhc--ccchHHHhhhCCCEEEEecchHhcccchhceeeeecC
Confidence            666777886665    6777788888888999999998773  312211 122222222347999998 79999999999


Q ss_pred             HHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeC
Q 011777          336 PEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTD  415 (477)
Q Consensus       336 ~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~  415 (477)
                      +++++.+.....  .++.+.+++.++.+.|+...-++..++++++.+++.+.|++    .+.+...++.|.++|+.+.  
T Consensus       229 ~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~----~~g~~~~~~~~~~~~i~~~--  300 (351)
T PRK14807        229 ENILKYLNLVKS--PYNINSLSQVIALKVLRTGVLKERVNYILNERERLIKELSK----IPGIKVYPSKTNFILVKFK--  300 (351)
T ss_pred             HHHHHHHHHccC--CCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh----CCCcEECcCCccEEEEEcC--
Confidence            999988875432  35667888888888876321123334444445555554433    3323334556778887762  


Q ss_pred             CCCCCccHHHHHHHHHHHHHcCceeeccCC---CCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          416 RKEKTPAKAETAVLFEKLRELGVLVGKGGL---HGNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       416 ~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                            .   ...+.+.|+++||.+.+...   ..+++||+..   +.++.+++++.|++++
T Consensus       301 ------~---~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~  350 (351)
T PRK14807        301 ------D---ADYVYQGLLERGILVRDFSKVEGLEGALRITVS---SCEANDYLINGLKELL  350 (351)
T ss_pred             ------C---HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEcC---CHHHHHHHHHHHHHhh
Confidence                  1   35688889999999977532   2468999643   6788999999998764

>PRK09105 putative aminotransferase; Provisional

Probab=99.93  E-value=3.7e-23  Score=207.85  Aligned_cols=321  Identities=15%  Similarity=0.129  Sum_probs=206.0

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR  176 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar  176 (477)
                      .++|+..|.  ++++ .+|.+.+++.+.+....    .|..+...+|++.+++.++.+.++|++|+|+++++..++....
T Consensus        44 ~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~----~Y~~~~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l~  116 (370)
T PRK09105         44 GAVFLNANE--CPLG-PSPAARDAAARSAALSG----RYDLELEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAFT  116 (370)
T ss_pred             CcEEecCCC--CCCC-CCHHHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHHc
Confidence            445555544  2455 57899999988765422    3555557889999999988788899999999999999988653


Q ss_pred             hccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEE
Q 011777          177 LSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFI  256 (477)
Q Consensus       177 ~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi  256 (477)
                        .+++.|++.+++|.++...+...             |...+.+|...  .+..|    .+++++..    ++....++
T Consensus       117 --~~gd~Vli~~P~y~~~~~~~~~~-------------g~~~~~v~~~~--~~~~d----~~~l~~~~----~~~~~v~l  171 (370)
T PRK09105        117 --SPTAGLVTADPTYEAGWRAADAQ-------------GAPVAKVPLRA--DGAHD----VKAMLAAD----PNAGLIYI  171 (370)
T ss_pred             --CCCCEEEEeCCChHHHHHHHHHc-------------CCeEEEecCCC--CCCCC----HHHHHhcC----CCCCEEEE
Confidence              35678999999998775443322             22222222211  11111    34454431    22234455


Q ss_pred             ecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee---eeccccc-CccceEEE
Q 011777          257 AETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV---TMAKGIG-NGLPLGAV  332 (477)
Q Consensus       257 ~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pig~v  332 (477)
                      ++| +|++|. ..+++.++++.+.|+ +|+++|+||+|..|+... ..  .+..+..++++   +|||.+| .|+|+||+
T Consensus       172 ~nP-~NPTG~-~~~~~~l~~l~~~~~-~~~~lIvDEaY~~f~~~~-s~--~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~  245 (370)
T PRK09105        172 CNP-NNPTGT-VTPRADIEWLLANKP-AGSVLLVDEAYIHFSDAP-SV--VDLVAQRKDLIVLRTFSKLYGMAGMRLGLA  245 (370)
T ss_pred             eCC-CCCCCc-CcCHHHHHHHHHhCC-CCcEEEEECchHHhccCc-ch--HHHHhhCCCEEEEecccHhhcCCccceeee
Confidence            566 566664 467788888888764 599999999998775321 11  12222234433   6899998 69999999


Q ss_pred             EeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEE
Q 011777          333 VTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMEL  412 (477)
Q Consensus       333 ~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~  412 (477)
                      ++++++++.+...   ..++.+.+++.++.++|+.   +++.+..++..+..++.+.+...+++. ...++.|.|+++++
T Consensus       246 v~~~~~i~~l~~~---~~~~~~~~~~~aa~~~L~~---~~~~~~~~~~~~~~r~~l~~~L~~~g~-~~~~~~~~f~~~~~  318 (370)
T PRK09105        246 AARPDLLAKLARF---GHNPLPVPAAAAGLASLRD---PKLVPQRRAENAAVREDTIAWLKKKGY-KCTPSQANCFMVDV  318 (370)
T ss_pred             ecCHHHHHHHHhc---CCCCcCHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHHHHCCC-CcCCCCCcEEEEeC
Confidence            9999999887654   3445677777787777752   344444444444444444443333432 23345677766554


Q ss_pred             eeCCCCCCccHHHHHHHHHHHHHcCceeeccC-CCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          413 VTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-LHGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      ..          ...++.+.|.++||.++... ...+++||++.   ++++++++++.|+++++
T Consensus       319 ~~----------~~~~l~~~L~~~gI~v~~~~~~~~~~~Ris~~---~~~~~~~l~~al~~~~~  369 (370)
T PRK09105        319 KR----------PAKAVADAMAKQGVFIGRSWPIWPNWVRVTVG---SEEEMAAFRSAFAKVMR  369 (370)
T ss_pred             CC----------CHHHHHHHHHHCCcEEecCCCCCCCeEEEEcC---CHHHHHHHHHHHHHHhh
Confidence            21          13578888999999984321 13579999644   68899999999998763

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.93  E-value=9e-24  Score=204.55  Aligned_cols=334  Identities=17%  Similarity=0.164  Sum_probs=219.1

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhc-cc-----cccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL-QH-----ATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANEL  170 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~-~~-----~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~  170 (477)
                      -|+|..+...      .+|+|++++...+... .+     ..+.......++.++.+++.++.+.+.|+||+||||+|.+
T Consensus         3 iYlD~~ATTp------~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNl   76 (386)
T COG1104           3 IYLDNAATTP------VDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNL   76 (386)
T ss_pred             ccccccccCC------CCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHH
Confidence            5899888775      5899999999988764 11     1111234556788899999999888999999999999999


Q ss_pred             HHHHHH-hc--cCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc
Q 011777          171 AMLMAR-LS--TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG  247 (477)
Q Consensus       171 Al~~ar-~~--~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~  247 (477)
                      ||+-+. .+  .++.+-|+....-|-....+..-.....       .++..++.  ...+..+      +++|+++|+  
T Consensus        77 aI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g-------~~Vtyl~V--~~~G~v~------~e~L~~al~--  139 (386)
T COG1104          77 AIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQG-------FEVTYLPV--DSNGLVD------LEQLEEALR--  139 (386)
T ss_pred             HHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcC-------CeEEEeCC--CCCCeEc------HHHHHHhcC--
Confidence            999532 22  1233334444555543222221111111       12222221  1122222      688999887  


Q ss_pred             CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec-ccccCc
Q 011777          248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA-KGIGNG  326 (477)
Q Consensus       248 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s-K~lg~G  326 (477)
                        +++.+|.+...||+.|+++|    +++|.++|+++|+++++|.||+ +|+..     ++......|+++|| -.|+|.
T Consensus       140 --~~T~LVSim~aNnE~G~IQp----I~ei~~i~k~~~i~fHvDAvQa-~Gkip-----i~~~~~~vD~ls~SaHK~~Gp  207 (386)
T COG1104         140 --PDTILVSIMHANNETGTIQP----IAEIGEICKERGILFHVDAVQA-VGKIP-----IDLEELGVDLLSFSAHKFGGP  207 (386)
T ss_pred             --CCceEEEEEecccCeeeccc----HHHHHHHHHHcCCeEEEehhhh-cCcee-----ccccccCcceEEeehhhccCC
Confidence              57899999999999999999    9999999999999999999998 76543     34444457999998 334444


Q ss_pred             cceEEEEeCHHHHHhhcccccccCC-------CCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 011777          327 LPLGAVVTTPEIANVMAQKIQFNTF-------GGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDI  397 (477)
Q Consensus       327 ~pig~v~~~~~~~~~~~~~~~~~t~-------~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~  397 (477)
                      -.+|+++.++.+.  +.+..+++.+       .-|..+.++..+++++..+  +...+++..++++|.++|.+.....-+
T Consensus       208 kGiGaLyv~~~~~--~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~  285 (386)
T COG1104         208 KGIGALYVRPGVR--LEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYL  285 (386)
T ss_pred             CceEEEEECCCCc--cCceeccCcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence            5789999877654  3333333322       1245555565666665433  456677788888888887764211111


Q ss_pred             cee-eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC---------------------CCCEEEEeCC
Q 011777          398 IGD-VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL---------------------HGNVFRIKPP  455 (477)
Q Consensus       398 ~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------~~~~iRi~p~  455 (477)
                      .+. .......+.+.|..         ...+.+...|..+||.+..|..                     ..+.|||++.
T Consensus       286 ~g~~~~rlP~~~~~~f~g---------v~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g  356 (386)
T COG1104         286 NGDDEPRLPNILNFSFPG---------VEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLG  356 (386)
T ss_pred             cCCcccCCCCeEEEEeCC---------CcHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcC
Confidence            111 11122333444421         1245677777778999977611                     1257999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHhh
Q 011777          456 MCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       456 ~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ...|++|+|++++.|.+++++
T Consensus       357 ~~tt~eei~~~~~~l~~~i~~  377 (386)
T COG1104         357 RFTTEEEIDAAAEALKEIIKR  377 (386)
T ss_pred             CCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999998875

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.92  E-value=3e-23  Score=206.80  Aligned_cols=325  Identities=18%  Similarity=0.164  Sum_probs=209.2

Q ss_pred             ccccCCCCCHHHHHHHHHHHhhccc----cccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHHHHHHHHHHHhcc
Q 011777          106 VTVSCGHCHPDVLNAIFEQSKLLQH----ATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEANELAMLMARLST  179 (477)
Q Consensus       106 ~~~~lGh~~p~v~~Av~~~l~~~~~----~~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA~~~Al~~ar~~~  179 (477)
                      +..+++ .+|.+++++.+ ......    ....+..+....+++.+....+  ...+.+++++||++|+..+++.+..  
T Consensus         6 ~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~--   81 (350)
T cd00609           6 GEPDFP-PPPEVLEALAA-AALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLN--   81 (350)
T ss_pred             CCCCCC-CCHHHHHHHHH-HhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCC--
Confidence            334555 35666666654 111111    1111223334445555544432  2256899999999999999987643  


Q ss_pred             CCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecc
Q 011777          180 GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAET  259 (477)
Q Consensus       180 ~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~ep  259 (477)
                      .+++|++..++|++.........             .....++.........+    .+.++..+    .+++++|++++
T Consensus        82 ~g~~vl~~~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~----~~~~~~~~----~~~~~~v~i~~  140 (350)
T cd00609          82 PGDEVLVPDPTYPGYEAAARLAG-------------AEVVPVPLDEEGGFLLD----LELLEAAK----TPKTKLLYLNN  140 (350)
T ss_pred             CCCEEEEcCCCchhHHHHHHHCC-------------CEEEEEecccccCCccC----HHHHHhhc----CccceEEEEEC
Confidence            46788888888887654433321             11111111111111100    12333332    35788999999


Q ss_pred             cCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCc----cccccCCCcceeeeccccc-CccceEEEEe
Q 011777          260 IQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW----GFETQGVIPDIVTMAKGIG-NGLPLGAVVT  334 (477)
Q Consensus       260 i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~----~~~~~gv~pDivt~sK~lg-~G~pig~v~~  334 (477)
                      .++++|. ..+.+.+++|.++|+++|+++|+||+|+++...+ ...    ..+..+....+.+++|.++ +|+++|++++
T Consensus       141 ~~~~tG~-~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~  218 (350)
T cd00609         141 PNNPTGA-VLSEEELEELAELAKKHGILIISDEAYAELVYDG-EPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIA  218 (350)
T ss_pred             CCCCCCc-ccCHHHHHHHHHHHHhCCeEEEEecchhhceeCC-cccccccCcCccCcEEEEeecccccCCcccceEEEec
Confidence            8888885 4578889999999999999999999999887655 322    1222233333447899999 7899999999


Q ss_pred             CH-HHHHhhcccccccCCCCcHHHHHHHHHHHHhhc--hhhHHHHHHHHHHHHHHHHHHHHHhCCCce-eeeccceeEEE
Q 011777          335 TP-EIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID--KERRQAHCADVGSHLLGRLRTLQERHDIIG-DVRGRGLMVGM  410 (477)
Q Consensus       335 ~~-~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~--~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~-~v~g~g~~~~i  410 (477)
                      ++ ++.+.+.......+++.+..++.++..+++...  .+...+++.++.+++++.|.+.    +... .....|.++++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~g~~~~~  294 (350)
T cd00609         219 PPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKEL----GPLVVVKPSGGFFLWL  294 (350)
T ss_pred             CHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhc----CCccccCCCccEEEEE
Confidence            99 788888766666677888999998888888652  2344555666666666666553    2222 34455777777


Q ss_pred             EEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC----CCCEEEEeCCCCCcHHHHHHHHHHHH
Q 011777          411 ELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL----HGNVFRIKPPMCFTKDDADFLVDALD  471 (477)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----~~~~iRi~p~~~~t~e~i~~~l~~l~  471 (477)
                      .+...        .....+.+.|.+.||.+.++..    .++++|++++..  ++|+++++++|+
T Consensus       295 ~~~~~--------~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~--~~~i~~~~~al~  349 (350)
T cd00609         295 DLPEG--------DDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP--EEELEEALERLA  349 (350)
T ss_pred             ecCCC--------ChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence            76321        1244567777788999987632    357999998877  999999999886

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.92  E-value=4.9e-23  Score=203.92  Aligned_cols=307  Identities=16%  Similarity=0.092  Sum_probs=201.1

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMA  175 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~a  175 (477)
                      ..++|+.++.  +++|.+.+.+.+   ..+..       |+.+. .+|++.|++++.  .++|++|+|++||+..++.  
T Consensus        20 ~~~i~l~~ne--~p~~~~~~~~~~---~~~~~-------yp~~~-~~Lr~~ia~~~~--~~~I~it~Gs~~al~~~~~--   82 (330)
T PRK05664         20 ADWLDLSTGI--APWPWPVPAIPA---DAWAR-------LPETD-DGLEAAARAYYG--APQLLPVAGSQAAIQALPR--   82 (330)
T ss_pred             HHheeecCCc--CCCCCCCcccCH---HHHHh-------CCCCh-HHHHHHHHHHhC--CCCEEECcCHHHHHHHHHH--
Confidence            3578888876  467765444432   22222       33333 688899999885  4789999999999988753  


Q ss_pred             HhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEE
Q 011777          176 RLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGF  255 (477)
Q Consensus       176 r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~v  255 (477)
                       . .+++.|++.+++|.++...+...             |...+.+|              .+++++.++    +....+
T Consensus        83 -~-~~gd~v~v~~P~y~~~~~~~~~~-------------g~~~~~v~--------------~~~~~~~~~----~~~~v~  129 (330)
T PRK05664         83 -L-RAPGRVGVLSPCYAEHAHAWRRA-------------GHQVRELD--------------EAEVEAALD----SLDVLV  129 (330)
T ss_pred             -c-cCCCEEEEcCCChHHHHHHHHHc-------------CCeEEEec--------------hhhHhhhhc----CCCEEE
Confidence             2 35678999999998876544433             22222222              134555554    222567


Q ss_pred             EecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeeccccc-CccceEEEEe
Q 011777          256 IAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIG-NGLPLGAVVT  334 (477)
Q Consensus       256 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg-~G~pig~v~~  334 (477)
                      +++|. |++| ...+.+.+++|.++|+++|++||+||+|.+|.... .+......+...-+-+|||.+| .|+|+||+++
T Consensus       130 l~nP~-NPTG-~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~-s~~~~~~~~~vi~~~SfSK~~gl~GlRiG~~v~  206 (330)
T PRK05664        130 VVNPN-NPTG-RRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQH-SLAACAHRPGLIVLRSFGKFFGLAGARLGFVLA  206 (330)
T ss_pred             EeCCc-CCCC-CccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcc-cccccccCCCEEEEeeccccccCCCcceEEEEe
Confidence            88886 5566 45688889999999999999999999998774322 2222221111122447999999 7999999999


Q ss_pred             CHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEe
Q 011777          335 TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELV  413 (477)
Q Consensus       335 ~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~  413 (477)
                      ++++++.+....  .+++.+.+++.++.++|+.... +...+.+.++.+++.+.|++    ++.. ...+.++++++.+ 
T Consensus       207 ~~~l~~~~~~~~--~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~----~~~~-~~~~~~~f~~~~~-  278 (330)
T PRK05664        207 EPALLRALAELL--GPWTVSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRR----HGLT-PAGGCALFQWVRT-  278 (330)
T ss_pred             CHHHHHHHHHhc--CCCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH----CCCc-ccCCcceEEEEec-
Confidence            999998887543  3556778888888888864221 22334444444445444443    4321 1223335666654 


Q ss_pred             eCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          414 TDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                             +   ...++.+.|.++||.+...+ ..+++||+..  .++++++++++.|++..++
T Consensus       279 -------~---~~~~~~~~l~~~gi~v~~f~-~~~~iRis~~--~~~~~~~~l~~al~~~~~~  328 (330)
T PRK05664        279 -------E---DAAALHEFLARRGILTRLFE-QPASLRFGLP--ADEADWARLDQALLAYRKE  328 (330)
T ss_pred             -------C---CHHHHHHHHHHCCeEEEECC-CCCeEEEECC--CCHHHHHHHHHHHHHHHhh
Confidence                   1   13578888999999998643 3578999644  3678899999999877653

>PRK07337 aminotransferase; Validated

Probab=99.92  E-value=8.9e-23  Score=206.86  Aligned_cols=340  Identities=16%  Similarity=0.144  Sum_probs=210.2

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEANELA  171 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA~~~A  171 (477)
                      ..++||..+...  ++ .+|.+.+++.+.+....  +....+..+.+..+++.+.+..+  .+.++|++|+|+++|+..+
T Consensus        30 ~~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~  106 (388)
T PRK07337         30 RDIIHMGIGEPD--FT-APEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLA  106 (388)
T ss_pred             CCEEEeCCcCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHH
Confidence            346777776643  32 36889999988775321  11111223445555555554433  3557899999999999988


Q ss_pred             HHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCC
Q 011777          172 MLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGK  251 (477)
Q Consensus       172 l~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~  251 (477)
                      +....  .+++.|++.+++|.+.........             ...+.+|......+..|    .+++++.+.   ++.
T Consensus       107 ~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~~----~~~l~~~~~---~~~  164 (388)
T PRK07337        107 CLALV--ERGDEVLMPDPSYPCNRHFVAAAE-------------GRPVLVPSGPAERFQLT----AADVEAAWG---ERT  164 (388)
T ss_pred             HHHhc--CCCCEEEEeCCCchhhHHHHHHcC-------------CEEEEeecCCccCCcCC----HHHHHhhcC---ccc
Confidence            87553  356789999999987644332221             11222221111112212    466776664   233


Q ss_pred             eeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee---eeccccc-Ccc
Q 011777          252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV---TMAKGIG-NGL  327 (477)
Q Consensus       252 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~  327 (477)
                      .+.+++.| ++++| ...+.+.+++|.++|++||+++|+||+|.+|...+ .....  ....++++   +|||.++ .|+
T Consensus       165 ~~v~l~~p-~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~-~~~~~--~~~~~~vi~~~S~SK~~~~~G~  239 (388)
T PRK07337        165 RGVLLASP-SNPTG-TSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDA-APVSA--LSLGDDVITINSFSKYFNMTGW  239 (388)
T ss_pred             eEEEEECC-CCCCC-cCcCHHHHHHHHHHHHHCCCEEEEeccccccccCC-CCcCh--hhccCCEEEEEechhhcCCchh
Confidence            34455555 55666 55688899999999999999999999999887654 22211  11223443   6899998 699


Q ss_pred             ceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCcee-eec
Q 011777          328 PLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIGD-VRG  403 (477)
Q Consensus       328 pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-v~g  403 (477)
                      |+||+++++++++.+.........+.+.+++.++.++++.-..   ++..+.++++.+++.+.|++    .+.... .+.
T Consensus       240 RiG~~~~~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~----~~~~~~~~p~  315 (388)
T PRK07337        240 RLGWLVVPEALVGTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALES----LGFKVPVMPD  315 (388)
T ss_pred             heeeeecCHHHHHHHHHHHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHh----cCCccccCCC
Confidence            9999999999988876554444556788888888877752111   12233334444444444433    333221 234


Q ss_pred             cceeEEEEEeeCCCCCCccHHHHHHHHHH-HHHcCceeeccCCC-----CCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          404 RGLMVGMELVTDRKEKTPAKAETAVLFEK-LRELGVLVGKGGLH-----GNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       404 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~-l~~~Gv~v~~~~~~-----~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      .|+++|+++.....   +......++.+. +.++||.+.|+..+     .+++|++..  .+++++++++++|.+++
T Consensus       316 ~g~f~~~~~~~~~~---~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~--~~~~~l~~~l~rl~~~l  387 (388)
T PRK07337        316 GAFYVYADCRGVAH---PAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYA--TSMSRLEEAVARLGKLF  387 (388)
T ss_pred             eeEEEEEecccccC---CCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEec--CCHHHHHHHHHHHHHHh
Confidence            57888998842100   111123456655 56789999887433     368999765  47899999999998865

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.92  E-value=1.1e-22  Score=206.97  Aligned_cols=350  Identities=13%  Similarity=0.058  Sum_probs=209.4

Q ss_pred             CCCEEEeecCCcccc-cCCCCCHHHHHHHHHHHhhcccccccc-CChHHHHHHHHHHhhCC------CCCCEEEEeCChH
Q 011777           94 NGRRYLDAFAGIVTV-SCGHCHPDVLNAIFEQSKLLQHATTIY-LHHAIADFAEALASKMP------GNLKVVYFVNSGT  165 (477)
Q Consensus        94 dG~~ylD~~~g~~~~-~lGh~~p~v~~Av~~~l~~~~~~~~~~-~~~~~~~l~~~La~~~~------~~~~~v~~~~sGs  165 (477)
                      .|..++|+..|.+.. +.=..++++.+++.+.+.....  ..| ......++++.+++++.      .+.++|++|+|++
T Consensus        29 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~--~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t  106 (403)
T TIGR01265        29 PEKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKF--NGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCS  106 (403)
T ss_pred             cCCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCC--CCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChH
Confidence            467889998887642 1112578999999887764211  122 22334455555555543      2356899999999


Q ss_pred             HHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHh
Q 011777          166 EANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHID  245 (477)
Q Consensus       166 eA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~  245 (477)
                      +|+..+++...  .+++.|++.+++|.++.......             |...+.++......+..|    .+++++++.
T Consensus       107 ~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~~~~  167 (403)
T TIGR01265       107 QAIEICIEALA--NPGANILVPRPGFPLYDTRAAFS-------------GLEVRLYDLLPEKDWEID----LDGLEALAD  167 (403)
T ss_pred             HHHHHHHHHhC--CCCCEEEEeCCCchhHHHHHHHc-------------CCEEEEecCCcccCCccC----HHHHHHHhC
Confidence            99999998764  35678999998886553322211             222222111100111111    467777664


Q ss_pred             ccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCc---ceeeeccc
Q 011777          246 FGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIP---DIVTMAKG  322 (477)
Q Consensus       246 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~p---Divt~sK~  322 (477)
                          .+++++++...++++| ...+.+.+++|.++|+++|+++|+||+|..|.+.+..+..+....-..   -+-+|||.
T Consensus       168 ----~~~~~v~i~~p~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~  242 (403)
T TIGR01265       168 ----EKTVAIVVINPSNPCG-SVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKR  242 (403)
T ss_pred             ----cCccEEEEecCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccc
Confidence                2344444444456666 456788899999999999999999999998866552222222111111   23379999


Q ss_pred             cc-CccceEEEEeC--HH-----HHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHh
Q 011777          323 IG-NGLPLGAVVTT--PE-----IANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQER  394 (477)
Q Consensus       323 lg-~G~pig~v~~~--~~-----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~  394 (477)
                      ++ .|+|+||++++  ++     +.+.+.... ..+++.+.+++.++.++|+.. .+.+.++.++..+.-++.+.+..+.
T Consensus       243 ~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~  320 (403)
T TIGR01265       243 WVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLL-QRILGPATIVQGALPDILENT-PQEFFDGKISVLKSNAELCYEELKD  320 (403)
T ss_pred             cCCCcceEEEEEEeCchhhhHHHHHHHHHHHh-hhhcCCChHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            76 59999999984  22     333333221 124567888998888888641 2333333333333233333333333


Q ss_pred             CCCcee-eeccceeEEEEEeeCCCCCCccHHHHHHHHHHH-HHcCceeeccCCC--CCEEEEeCCCCCcHHHHHHHHHHH
Q 011777          395 HDIIGD-VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKL-RELGVLVGKGGLH--GNVFRIKPPMCFTKDDADFLVDAL  470 (477)
Q Consensus       395 ~~~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l~~l  470 (477)
                      ++.+.. .+..|+++|+++.....   +......++.+.+ .++||.+.++..+  .+++||+..  ..++++++++++|
T Consensus       321 ~~~~~~~~p~~g~f~~~~~~~~~~---~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~--~~~~~l~~~l~~l  395 (403)
T TIGR01265       321 IPGLVCPKPEGAMYLMVKLELELF---PEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITIT--VPESMLEEACSRI  395 (403)
T ss_pred             CCCceecCCCceeEEEEecccccc---CCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEec--CCHHHHHHHHHHH
Confidence            432322 24457888888743210   0000134566664 5789999998544  478999754  5689999999999


Q ss_pred             HHHHhh
Q 011777          471 DYSMSK  476 (477)
Q Consensus       471 ~~~l~~  476 (477)
                      .+++++
T Consensus       396 ~~~~~~  401 (403)
T TIGR01265       396 KEFCER  401 (403)
T ss_pred             HHHHHh
Confidence            998865

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=6.2e-23  Score=205.59  Aligned_cols=325  Identities=16%  Similarity=0.133  Sum_probs=209.9

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCC-CEEEEeCChHHHHHHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNL-KVVYFVNSGTEANELAML  173 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~-~~v~~~~sGseA~~~Al~  173 (477)
                      ++.++|+..|..  +++ .+|++++++.+.+....  ...|..+...+|++.+++++.... ++|++++|+++++..+++
T Consensus        25 ~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~--~~~Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~   99 (356)
T PRK04870         25 ATGMVKLDAMEN--PYR-LPAELRAELGERLAEVA--LNRYPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLAL   99 (356)
T ss_pred             CCCceeCcCCCC--CCC-CCHHHHHHHHHHhhccc--cccCCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHH
Confidence            467888766643  465 57899999998876421  123444445788888888886543 479999999999998887


Q ss_pred             HHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCee
Q 011777          174 MARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA  253 (477)
Q Consensus       174 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a  253 (477)
                      +..  .+++.|++.+++|.++...+...             |...+.+|...  .+..|    .+++++.+.   ..+++
T Consensus       100 ~~~--~~gd~vlv~~P~y~~~~~~~~~~-------------g~~~~~i~~~~--~~~~d----~~~l~~~~~---~~~~~  155 (356)
T PRK04870        100 ACA--KPGATVLAPEPGFVMYRMSAKLA-------------GLEFVGVPLTA--DFTLD----LPAMLAAIA---EHRPA  155 (356)
T ss_pred             Hhc--CCCCEEEECCCCHHHHHHHHHHc-------------CCEEEEecCCC--CCCCC----HHHHHHHhh---cCCCC
Confidence            553  35678999999998764432222             23333332211  11112    477777775   23456


Q ss_pred             EEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeeccccc-CccceEEE
Q 011777          254 GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIG-NGLPLGAV  332 (477)
Q Consensus       254 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg-~G~pig~v  332 (477)
                      +|++...++++|.+ .+.+.+++|.++|   ++++|+||+|..|.... ........+...-+-+||| ++ .|+|+||+
T Consensus       156 ~v~l~~p~NPtG~~-~~~~~~~~i~~~~---~~~ii~De~y~~~~~~~-~~~~~~~~~~vi~~~S~SK-~~~~GlRiG~~  229 (356)
T PRK04870        156 LVFLAYPNNPTGNL-FDDADVERIIEAA---PGLVVVDEAYQPFAGDS-WLPRLARFPNLLVMRTVSK-LGLAGLRLGYL  229 (356)
T ss_pred             EEEEcCCCCCCCCC-CCHHHHHHHHHHC---CCEEEEECCchhhcCcc-hHHHHhhCCCEEEEecchh-hhhHHHhhhhh
Confidence            66655456777754 4677777777777   78999999998875322 1111122222223447999 77 49999999


Q ss_pred             EeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEE
Q 011777          333 VTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGME  411 (477)
Q Consensus       333 ~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~  411 (477)
                      ++++++++.+....  ..++.+.+++.++..+++..+. ++..++++++.+++.+.|++    .+.+...+..|.++++.
T Consensus       230 i~~~~~i~~~~~~~--~~~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~  303 (356)
T PRK04870        230 AGHPAWIAELDKVR--PPYNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAA----LPGVTVFPSAANFILVR  303 (356)
T ss_pred             hCCHHHHHHHHHcc--CCCcCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh----CCCcEECCCCCeEEEEE
Confidence            99999998886543  3456778888887777753211 22334444455555554443    33233344567777886


Q ss_pred             EeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          412 LVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      +.        .   ...+.+.|.++||.+.++..+    .+++||+..   +.+++++++++|++++
T Consensus       304 ~~--------~---~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~---~~~~~~~l~~al~~~~  356 (356)
T PRK04870        304 VP--------D---AAAVFDGLKTRGVLVKNLSGMHPLLANCLRVTVG---TPEENAQFLAALKAAL  356 (356)
T ss_pred             CC--------C---HHHHHHHHHHCCEEEEECCCCCCCCCCeEEEeCC---CHHHHHHHHHHHHHhC
Confidence            52        1   346778899999999887433    468999654   7899999999998763

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=7.8e-23  Score=204.71  Aligned_cols=325  Identities=18%  Similarity=0.148  Sum_probs=204.6

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLM  174 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~  174 (477)
                      ++.+|||..|..  .++ .+|.+.+++.+.+....   ..|+.+...+|++.+++++..+.++|++|+|+++|+..+++.
T Consensus        23 ~~~~i~l~~~~~--~~~-~~~~~~~a~~~~~~~~~---~~y~~~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~   96 (353)
T PRK05387         23 LAKLIKLNTNEN--PYP-PSPKVLEAIRAALGDDL---RLYPDPNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLA   96 (353)
T ss_pred             ccceeeccCCCC--CCC-CCHHHHHHHHHHhhhhh---hcCCCCcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHH
Confidence            356899888775  344 37899999988766421   234444457889999998877778999999999999999986


Q ss_pred             HHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeE
Q 011777          175 ARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAG  254 (477)
Q Consensus       175 ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~  254 (477)
                      ...  +++.|++.+++|..+.......             |.....+|..  ..+.-|    +++++   +    .....
T Consensus        97 l~~--~gd~vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~--~~~~~d----~~~l~---~----~~~~v  148 (353)
T PRK05387         97 FFN--HDRPLLFPDITYSFYPVYAGLY-------------GIPYEEIPLD--DDFSID----VEDYL---R----PNGGI  148 (353)
T ss_pred             hcC--CCCEEEEeCCCHHHHHHHHHHc-------------CCEEEEeecC--CCCCCC----HHHHH---h----cCCEE
Confidence            643  5678999999986654332221             2222222211  111111    24443   2    12345


Q ss_pred             EEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cccCCCcceeeeccccc-CccceEEE
Q 011777          255 FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQGVIPDIVTMAKGIG-NGLPLGAV  332 (477)
Q Consensus       255 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~gv~pDivt~sK~lg-~G~pig~v  332 (477)
                      ++++| ++++|.+. +.+.+++|.+.+  +++++|+||+|..|+..  ..... +..+...-+-+|||.++ .|+|+||+
T Consensus       149 ~~~~P-~NPtG~~~-~~~~~~~l~~~~--~~~~livDe~y~~~~~~--~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~  222 (353)
T PRK05387        149 IFPNP-NAPTGIAL-PLAEIERILAAN--PDSVVVIDEAYVDFGGE--SAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFA  222 (353)
T ss_pred             EEeCC-CCCCCCCC-CHHHHHHHHHhC--CCcEEEEeCcccccCCc--chHHHHhhCCCEEEEEehhHhhcchhhhceee
Confidence            56666 56666555 444455554433  29999999999877421  11111 22222222336999999 79999999


Q ss_pred             EeCHHHHHhhcccccc-cCCCCcHHHHHHHHHHHHhhc-hhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEE
Q 011777          333 VTTPEIANVMAQKIQF-NTFGGNPVCSAGGLAVLRVID-KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM  410 (477)
Q Consensus       333 ~~~~~~~~~~~~~~~~-~t~~~~~~~~aaa~a~l~~l~-~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i  410 (477)
                      ++++++++.+...... .+++.+.+++.++.++++..+ .++..+++.++.+++.+.|++    ++. ...+..|.++++
T Consensus       223 ~~~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~-~~~~~~~~~~~~  297 (353)
T PRK05387        223 IGHPELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEA----LGF-EVLPSKANFVFA  297 (353)
T ss_pred             ecCHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH----CCC-eECCCcCcEEEE
Confidence            9999998887654322 356778888888888875211 123344444455555555544    332 223345667666


Q ss_pred             EEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          411 ELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--HGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .+..         ....++.+.|.++||.+...+.  ..+++||+..   +++++++++++|++++.+
T Consensus       298 ~~~~---------~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~~~~~~~~~L~~~~~~  353 (353)
T PRK05387        298 RHPS---------HDAAELAAKLRERGIIVRHFNKPRIDQFLRITIG---TDEEMEALVDALKEILAK  353 (353)
T ss_pred             ECCC---------CCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC---CHHHHHHHHHHHHHHhhC
Confidence            5421         1245688889999999975432  2468999654   679999999999998753

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.92  E-value=2.1e-22  Score=209.23  Aligned_cols=340  Identities=14%  Similarity=0.100  Sum_probs=203.8

Q ss_pred             CHHHHHHHHHHHhhcc-----ccccccCChHHHHHHHHHHhhC--CCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEE
Q 011777          114 HPDVLNAIFEQSKLLQ-----HATTIYLHHAIADFAEALASKM--PGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIA  186 (477)
Q Consensus       114 ~p~v~~Av~~~l~~~~-----~~~~~~~~~~~~~l~~~La~~~--~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~  186 (477)
                      +..+.+++.+.++...     |....+..+.++.+++++.+..  +.+.++|++|+|+++|+..+++.... .+++.|++
T Consensus        90 P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~-~~gD~Vlv  168 (481)
T PTZ00377         90 PADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIG-DPSDGVMI  168 (481)
T ss_pred             CHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcc-CCCCEEEE
Confidence            4577787776665421     1112233345555666665442  24567899999999999999986531 25678999


Q ss_pred             EccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeE-EEecccCCC
Q 011777          187 LRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAG-FIAETIQGV  263 (477)
Q Consensus       187 ~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~-vi~epi~~~  263 (477)
                      ..++|.++.......+.             ..+.++......|.-|    .+++++.++..  ...++++ ++++| +|+
T Consensus       169 ~~P~y~~y~~~~~~~g~-------------~~v~v~~~~~~~~~~d----~~~l~~~l~~~~~~~~~~k~l~l~~P-~NP  230 (481)
T PTZ00377        169 PIPQYPLYSAAITLLGG-------------KQVPYYLDEEKGWSLD----QEELEEAYEQAVRNGITPRALVVINP-GNP  230 (481)
T ss_pred             CCCCchhHHHHHHHcCC-------------EEEEEEeccccCCCCC----HHHHHHHHHHHHhcCCCeeEEEEECC-CCC
Confidence            99999987554433322             2222222111122222    47787777521  1124554 55555 566


Q ss_pred             CCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCC-CCCcccc-c-cCCCc------cee---eecccc-c-Cccce
Q 011777          264 GGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTG-SHYWGFE-T-QGVIP------DIV---TMAKGI-G-NGLPL  329 (477)
Q Consensus       264 ~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G-~~~~~~~-~-~gv~p------Div---t~sK~l-g-~G~pi  329 (477)
                      +| .+.+.+.+++|.++|++||++||+||+|..+.+.+ ..+..+. . .+..+      .++   +|||++ + .|||+
T Consensus       231 TG-~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRi  309 (481)
T PTZ00377        231 TG-QVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRG  309 (481)
T ss_pred             CC-cCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCce
Confidence            66 56689999999999999999999999999876532 1121211 0 11111      233   689986 6 59999


Q ss_pred             EEEEe---CHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc--h---hhHHHHHHHHHHHH---HHHHHHHHHhCCCc
Q 011777          330 GAVVT---TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID--K---ERRQAHCADVGSHL---LGRLRTLQERHDII  398 (477)
Q Consensus       330 g~v~~---~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~--~---~~~~~~~~~~~~~l---~~~L~~l~~~~~~~  398 (477)
                      ||+++   ++++++.+.... ..+++.|.+++.++.++++...  +   +.+.+++++..+.+   ++.+.+...+++.+
T Consensus       310 G~~~~~~~p~~li~~l~~~~-~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~  388 (481)
T PTZ00377        310 GYFELTNIPPEVREQIYKLA-SINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGV  388 (481)
T ss_pred             EEEEEeCCCHHHHHHHHHHh-heecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            99986   899988887643 2345688999999998885311  0   12333333322222   22233333334434


Q ss_pred             eeeeccc-eeEEEEEeeCCCCCCc-----cHHHHHHHHHHHHHcCceeeccCCCC-----CEEEEeCCCCCcHHHHHHHH
Q 011777          399 GDVRGRG-LMVGMELVTDRKEKTP-----AKAETAVLFEKLRELGVLVGKGGLHG-----NVFRIKPPMCFTKDDADFLV  467 (477)
Q Consensus       399 ~~v~g~g-~~~~i~~~~~~~~~~~-----~~~~~~~~~~~l~~~Gv~v~~~~~~~-----~~iRi~p~~~~t~e~i~~~l  467 (477)
                      ....+.| +++|+++.-.......     .......+...|.++||.+.||..++     +++|++..  .+++++++++
T Consensus       389 ~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~--~~~e~l~~~l  466 (481)
T PTZ00377        389 SCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITIL--PPEEQIEEMV  466 (481)
T ss_pred             EeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEEC--CCHHHHHHHH
Confidence            4445554 5666555211000000     00011223566678899999986543     48999754  7789999999


Q ss_pred             HHHHHHHhh
Q 011777          468 DALDYSMSK  476 (477)
Q Consensus       468 ~~l~~~l~~  476 (477)
                      ++|.+++++
T Consensus       467 ~rl~~~~~~  475 (481)
T PTZ00377        467 KKIKEFHES  475 (481)
T ss_pred             HHHHHHHHH
Confidence            999988764

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.92  E-value=2.1e-22  Score=202.01  Aligned_cols=327  Identities=15%  Similarity=0.058  Sum_probs=201.9

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMA  175 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~a  175 (477)
                      ...+||..+.  ++++ .+|.+.+++.+.+....    .|..+...+|++.|+++++.+.++|++|+|++|++..+++..
T Consensus        22 ~~~i~l~~~~--n~~~-~~~~~~~a~~~~~~~~~----~Y~~~~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l   94 (360)
T PRK07392         22 DAILDFSASI--NPLG-PPESVIAAIQSALSALR----HYPDPDYRELRLALAQHHQLPPEWILPGNGAAELLTWAGREL   94 (360)
T ss_pred             ccEEEeCCcC--CCCC-CCHHHHHHHHHHHHHhh----cCCCcCHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHh
Confidence            4678887654  3465 67899999888776422    244334567888888888777789999999999999888753


Q ss_pred             HhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEE
Q 011777          176 RLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGF  255 (477)
Q Consensus       176 r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~v  255 (477)
                       .  +++.|++.+++|.++.......+             ...+.+|......+..    ...+++++.... ......+
T Consensus        95 -~--~g~~vlv~~P~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~  153 (360)
T PRK07392         95 -A--QLRAVYLITPAFGDYRRALRAFG-------------ATVKELPLPLDQPSPG----LTLRLQTLPPQL-TPNDGLL  153 (360)
T ss_pred             -C--CCCeEEEECCCcHHHHHHHHHcC-------------CeEEEEecccccCCcc----cccCHHHHHHhc-cCCCEEE
Confidence             2  34689999999988765544432             2222222111111100    012334333321 2233445


Q ss_pred             EecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc-ccccCCCc---ceeeeccccc-CccceE
Q 011777          256 IAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG-FETQGVIP---DIVTMAKGIG-NGLPLG  330 (477)
Q Consensus       256 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~-~~~~gv~p---Divt~sK~lg-~G~pig  330 (477)
                      +++| +|++|.+..    .++|.++++++++ +|+||+|.+|.+.+ .... ....+..+   -+-+|||.++ .|+|+|
T Consensus       154 l~nP-~NPTG~~~~----~~~l~~l~~~~~~-~IiDE~y~~~~~~~-~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG  226 (360)
T PRK07392        154 LNNP-HNPTGKLWS----REAILPLLEQFAL-VVVDEAFMDFLPPD-AEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLG  226 (360)
T ss_pred             EeCC-CCCCCCCcC----HHHHHHHHHHCCE-EEEECchhhhccCc-cccchHHHhhcCCCEEEEEechhhhcCCchhee
Confidence            5555 666675554    4567888889986 56699999986655 2111 11111122   2347999999 899999


Q ss_pred             EEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEE
Q 011777          331 AVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM  410 (477)
Q Consensus       331 ~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i  410 (477)
                      |+++++++++.+....  ..++.+.+++.++.++|+.   ..+.++.++..+..++.+.+..++++.+....+.|.++++
T Consensus       227 ~~v~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~fl~~  301 (360)
T PRK07392        227 YAIAHPDRLQRWQQWR--DPWPVNGLAAAAAIAALAD---RDFQQQTWAWLPPAREALFQGLASLPGLTPLPSAANFLLV  301 (360)
T ss_pred             eeeCCHHHHHHHHhhC--CCCCCCHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCCEEEE
Confidence            9999999988876533  3467889999998888863   3333333333333333343333334333334456778787


Q ss_pred             EEeeCCCCCCccHHHHHHHHHHH-HHcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          411 ELVTDRKEKTPAKAETAVLFEKL-RELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      ++..          ...++.+.+ .++||.+.++..+    .+++||+..   +.++.+++.+.|+++++
T Consensus       302 ~~~~----------~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~---~~~~~~~l~~al~~~~~  358 (360)
T PRK07392        302 QSQG----------SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVR---TEAENQRLLEALAAILA  358 (360)
T ss_pred             EcCC----------CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeC---CHHHHHHHHHHHHHHhh
Confidence            6521          134566665 5679999988543    368999643   35556677777766553

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.92  E-value=5.1e-23  Score=203.90  Aligned_cols=278  Identities=22%  Similarity=0.216  Sum_probs=190.9

Q ss_pred             cCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCC
Q 011777          135 YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQG  214 (477)
Q Consensus       135 ~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~  214 (477)
                      |+++...++++.++++++.+.+.+++++|+++++..+.++.   +++ +|++.+++|+.+.......             
T Consensus        44 y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~l---~~g-~vl~~~p~y~~~~~~~~~~-------------  106 (330)
T TIGR01140        44 YPDPEYDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRLL---APG-RVLVLAPTYSEYARAWRAA-------------  106 (330)
T ss_pred             CCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh---CCC-eEEEeCCCcHHHHHHHHHc-------------
Confidence            44444588999999988766789999999999999865542   234 6888999998764433211             


Q ss_pred             CeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcc
Q 011777          215 EIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQ  294 (477)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~  294 (477)
                      |+....+++             .+++++.++    +..+++++.| ++++| ..++.+.+++|.++|++||+++|+||+|
T Consensus       107 g~~~~~~~d-------------~~~l~~~~~----~~~~v~i~~p-~NPtG-~~~~~~~~~~l~~~a~~~~~~ii~De~y  167 (330)
T TIGR01140       107 GHEVVELPD-------------LDRLPAALE----ELDVLVLCNP-NNPTG-RLIPPETLLALAARLRARGGWLVVDEAF  167 (330)
T ss_pred             CCEEEEeCC-------------HHHHHhhcc----cCCEEEEeCC-CCCCC-CCCCHHHHHHHHHHhHhcCCEEEEECcc
Confidence            333333331             467777664    1224556666 55666 4568899999999999999999999999


Q ss_pred             cCccCCCCCCccccccCCCccee---eeccccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch
Q 011777          295 TGFGRTGSHYWGFETQGVIPDIV---TMAKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK  370 (477)
Q Consensus       295 ~gfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~  370 (477)
                      .+|.... .+...  .+..++++   +|||.+| .|+|+||+++++++++.+....  ..++.++++++++.+.++   +
T Consensus       168 ~~~~~~~-~~~~~--~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~l~~~~--~~~~~s~~~q~~~~~~l~---~  239 (330)
T TIGR01140       168 IDFTPDA-SLAPQ--AARFPGLVVLRSLTKFFGLAGLRLGFVVAHPALLARLREAL--GPWTVNGPARAAGRAALA---D  239 (330)
T ss_pred             cccCCcc-chhhH--hccCCCEEEEEecchhhcCchhhhhheeCCHHHHHHHHhcC--CCCCchHHHHHHHHHHHh---c
Confidence            9885432 22221  11122333   7999999 6999999999999998887543  356678888888877775   3


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC----
Q 011777          371 ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH----  446 (477)
Q Consensus       371 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----  446 (477)
                      +++.++.++..+..++.+.+..++++.+....+.|.|+|+.+..           ..++.+.|+++||.+.++..+    
T Consensus       240 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~f~~~~~~~-----------~~~l~~~l~~~gi~v~pg~~f~~~~  308 (330)
T TIGR01140       240 TAWQAATRARLAAERARLAALLARLGGLEVVGGTALFLLVRTPD-----------AAALHEALARRGILIRDFDNFPGLD  308 (330)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCCCceECCCCCeEEEEEcCC-----------HHHHHHHHHHCCEEEEECCCCCCCC
Confidence            44545555555666666655555565444445567888887621           347889999999999998543    


Q ss_pred             CCEEEEeCCCCCcHHHHHHHHHHH
Q 011777          447 GNVFRIKPPMCFTKDDADFLVDAL  470 (477)
Q Consensus       447 ~~~iRi~p~~~~t~e~i~~~l~~l  470 (477)
                      .++|||+++  ...++ ++++.+|
T Consensus       309 ~~~iRi~~~--~~~~~-~~~~~~l  329 (330)
T TIGR01140       309 PRYLRFALP--TDEEN-DRLEEAL  329 (330)
T ss_pred             CCEEEEEec--CHHHH-HHHHHhh
Confidence            368999654  34444 7777765

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK03321 putative aminotransferase; Provisional

Probab=99.92  E-value=6.1e-23  Score=205.37  Aligned_cols=323  Identities=17%  Similarity=0.118  Sum_probs=209.2

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR  176 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar  176 (477)
                      .++|+..+..  .+| .+|.+.+++.+.+....    .|......++++.++++++.+.++|++++|.++++..++....
T Consensus        23 ~~i~l~~~~~--~~~-~~~~~~~a~~~~~~~~~----~y~~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~   95 (352)
T PRK03321         23 GAIKLSSNET--PFG-PLPSVRAAIARAAAGVN----RYPDMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATA   95 (352)
T ss_pred             cceeccCCCC--CCC-CCHHHHHHHHHHHHhcC----cCCCCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhc
Confidence            4788877664  355 46789999987765432    2444567788899999887666789999999998888776542


Q ss_pred             hccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEE
Q 011777          177 LSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFI  256 (477)
Q Consensus       177 ~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi  256 (477)
                        .+++.|++..++|..+......             .|...+.++....  .+.|    ++++++.++    +++++|+
T Consensus        96 --~~gd~Vli~~p~y~~~~~~~~~-------------~g~~~~~v~~~~~--~~~~----~~~l~~~~~----~~~~~v~  150 (352)
T PRK03321         96 --GPGDEVIFAWRSFEAYPILVQV-------------AGATPVQVPLTPD--HTHD----LDAMAAAIT----DRTRLIF  150 (352)
T ss_pred             --CCCCEEEeCCCCHHHHHHHHHH-------------cCCEEEEccCCCC--CCCC----HHHHHHhhc----cCCCEEE
Confidence              3567888887777543221111             1222233222111  1111    467777765    2455666


Q ss_pred             ecccCCCCCeeeCCchhHHHHHHHHHH--hCcEEEEcCcccCccCCCCCCccccccCCCccee---eeccccc-CccceE
Q 011777          257 AETIQGVGGAVELAPGYLKLVYDIVRK--AGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV---TMAKGIG-NGLPLG  330 (477)
Q Consensus       257 ~epi~~~~G~~~~~~~~l~~l~~l~~~--~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pig  330 (477)
                      ++..++++|.+.+    .+++.++|++  +++++|+||+|.+|.+.+....++......++++   +|||.+| .|+|+|
T Consensus       151 l~~p~NPtG~~~~----~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG  226 (352)
T PRK03321        151 VCNPNNPTGTVVT----PAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVG  226 (352)
T ss_pred             EeCCCCCcCCCcC----HHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhh
Confidence            6556677786665    4555566655  6999999999998866542112222222234444   6899999 699999


Q ss_pred             EEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEE
Q 011777          331 AVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM  410 (477)
Q Consensus       331 ~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i  410 (477)
                      |+++++++++.+...  ..+++.+++++.++.++|+.  .+.+.++.++..+. ++.+.+...+.+.. ..+..|.++++
T Consensus       227 ~~v~~~~~~~~~~~~--~~~~~~s~~~q~~a~~~l~~--~~~~~~~~~~~~~~-r~~~~~~L~~~~~~-~~~~~g~~i~i  300 (352)
T PRK03321        227 YAVGHPEVIAALRKV--AVPFSVNSLAQAAAIASLAA--EDELLERVDAVVAE-RDRVRAALRAAGWT-VPPSQANFVWL  300 (352)
T ss_pred             hhcCCHHHHHHHHHh--cCCCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHH-HHHHHHHHHHCCCc-cCCCCCCEEEE
Confidence            999999999988754  35677889999988888863  23343333333222 12233333333322 23345888888


Q ss_pred             EEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          411 ELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .+..          ....+.+.|.++||.+.+.+  .+.|||++   .+.+++++++++|++++..
T Consensus       301 ~l~~----------~~~~~~~~l~~~gI~v~~~~--~~~iRi~~---~~~~~~~~~~~al~~~~~~  351 (352)
T PRK03321        301 PLGE----------RTADFAAAAAEAGVVVRPFA--GEGVRVTI---GAPEENDAFLRAARAWRAG  351 (352)
T ss_pred             eCCC----------CHHHHHHHHHHCCEEEEccC--CCcEEEee---CCHHHHHHHHHHHHHHhcc
Confidence            7621          14568888999999998743  45699963   5899999999999998764

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.92  E-value=1e-22  Score=204.61  Aligned_cols=341  Identities=16%  Similarity=0.119  Sum_probs=209.5

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHh--hccccccccCCh-HHHHHHHHHHhhCC------CCCC-EEEEeCChHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSK--LLQHATTIYLHH-AIADFAEALASKMP------GNLK-VVYFVNSGTE  166 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~--~~~~~~~~~~~~-~~~~l~~~La~~~~------~~~~-~v~~~~sGse  166 (477)
                      +.|||.+|..  ..+++||.+.+++.+..+  ........|... ...+|.+.+++++.      .+.+ .+++++|..+
T Consensus         2 ~~I~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~   79 (363)
T PF00155_consen    2 DVINLGSNAP--LLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQA   79 (363)
T ss_dssp             TEEESSSSST--SSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHH
T ss_pred             CEEEEECCCC--CCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEeccccc
Confidence            4688877765  344456666666655443  111222234433 36778888887765      4456 6777777666


Q ss_pred             HHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777          167 ANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF  246 (477)
Q Consensus       167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~  246 (477)
                      ++..++.+.+ ..+++.|++.+++|.+........+             ...++++......+..|    .++|++.++.
T Consensus        80 ~~~~~~~~~~-~~~~~~vlv~~P~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~d----~~~l~~~l~~  141 (363)
T PF00155_consen   80 ALFLLLRLLK-INPGDTVLVPDPCYPSYIEAARLLG-------------AEVIPVPLDSENDFHLD----PEALEEALDE  141 (363)
T ss_dssp             HHHHHHHHHH-SSTTSEEEEEESSSTHHHHHHHHTT-------------SEEEEEEEEETTTTEET----HHHHHHHHHT
T ss_pred             chhhhhhccc-ccccccceecCCccccccccccccC-------------ceeeecccccccccccc----cccccccccc
Confidence            6666665543 3467789999999987755443332             22222221100111112    4788888874


Q ss_pred             cCCC--CeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc-ccccCCCcc---eeeec
Q 011777          247 GTSG--KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG-FETQGVIPD---IVTMA  320 (477)
Q Consensus       247 ~~~~--~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~-~~~~gv~pD---ivt~s  320 (477)
                      ...+  ++.+|++...++++|. .++.+.+++|.++|++||+++|+||+|.++......+.. .....-.++   +-++|
T Consensus       142 ~~~~~~~~~~v~~~~p~nPtG~-~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~S  220 (363)
T PF00155_consen  142 LPSKGPRPKAVLICNPNNPTGS-VLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLS  220 (363)
T ss_dssp             SHTTTETEEEEEEESSBTTTTB-B--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEEST
T ss_pred             ccccccccceeeeccccccccc-ccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeecc
Confidence            3222  3466666666777774 568888999999999999999999999988654311211 111122222   33689


Q ss_pred             cccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 011777          321 KGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDII  398 (477)
Q Consensus       321 K~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~  398 (477)
                      |.+| .|+|+||+++++++++.+......+..  +.+.+.++.+.+..... +++.++.++..+..++.+.+..++.+..
T Consensus       221 K~~g~~GlRvG~i~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~  298 (363)
T PF00155_consen  221 KSFGLPGLRVGYIVAPPELIERLRRFQRSGLS--SSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEIGIT  298 (363)
T ss_dssp             TTTTSGGGTEEEEEEEHHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSE
T ss_pred             ccccccccccccccchhhhhhhhhhccccccc--cchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHhhhh
Confidence            9999 599999999999999988765433333  66777776666654321 1133333333333333333433334433


Q ss_pred             eeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccCCC--CCEEEEeCCCCCcHHHHHHHHHHH
Q 011777          399 GDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGGLH--GNVFRIKPPMCFTKDDADFLVDAL  470 (477)
Q Consensus       399 ~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l~~l  470 (477)
                      ......|.++++.+..         ....++.+.|+++ ||.+.|+..+  .+++|++. ..++++++++++++|
T Consensus       299 ~~~~~~~~~~~~~~~~---------~~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~-a~~~~e~~~~~~~~l  363 (363)
T PF00155_consen  299 VLPPEAGFFLWVRLDP---------NDAEELAQELLEEYGILVRPGSYFGVPGYIRISL-ASHSEEDLEEALERL  363 (363)
T ss_dssp             EEHHSBSSEEEEEESH---------HHHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred             eeeccCccEEEEEccc---------chHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEe-ccCCHHHHHHHHhhC
Confidence            3333356777776632         1456788889988 9999987432  57999987 578999999999986

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.92  E-value=9.3e-23  Score=208.00  Aligned_cols=343  Identities=14%  Similarity=0.070  Sum_probs=200.1

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-------ccccccCChHHHHHHHHHHhhC--CCCCCEEEEeCChH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-------HATTIYLHHAIADFAEALASKM--PGNLKVVYFVNSGT  165 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-------~~~~~~~~~~~~~l~~~La~~~--~~~~~~v~~~~sGs  165 (477)
                      |..++|+..|...  ++ .+|.+.+++.+.+....       +....+..+.+..+++.+.+..  +.+.++|++|+|++
T Consensus        33 ~~~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~  109 (409)
T PRK07590         33 EAKIIRLGIGDVT--QP-LPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAK  109 (409)
T ss_pred             CCceEEecCcCCC--CC-CCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHH
Confidence            5567888777643  33 46889999988876531       1111122233444444443332  45668999999999


Q ss_pred             HHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCe--eeecCCCCcCCCCCCCHHHHHHHHHHH
Q 011777          166 EANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEI--HHVVNPDPYHGSFGSDAARYAQDLQDH  243 (477)
Q Consensus       166 eA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~le~~  243 (477)
                      +++...+.+   ..+++.|++.+++|.++.......+.....    ...|.  ..+++|......+.       .+++  
T Consensus       110 ~al~~l~~~---~~~gd~V~v~~P~Y~~~~~~~~~~g~~~~~----~~~~~~~~~~~v~~~~~~~~~-------~d~~--  173 (409)
T PRK07590        110 CDTGNILDI---FGPDNTIAVTDPVYPVYVDTNVMAGRTGEA----NEDGRYSGIVYLPCTAENNFV-------PELP--  173 (409)
T ss_pred             HHHHHHHHh---cCCCCEEEEeCCCCcchHHHHHHcCCcccc----cccccccceeEeecccccCCc-------ccCc--
Confidence            999875432   346788999999999876544443321000    00000  01111111011111       1111  


Q ss_pred             HhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccc-ccC---CCcceeee
Q 011777          244 IDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE-TQG---VIPDIVTM  319 (477)
Q Consensus       244 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~-~~g---v~pDivt~  319 (477)
                           ..++++|++...+|++| .+++.+.+++|.++|++||++||+||+|..|-..+.....+. ..+   ....+-||
T Consensus       174 -----~~~~k~i~l~nP~NPTG-~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~Sf  247 (409)
T PRK07590        174 -----EEKVDIIYLCFPNNPTG-TVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSF  247 (409)
T ss_pred             -----ccCceEEEEeCCCCCcC-CcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecC
Confidence                 12445554433456666 566899999999999999999999999998855441111111 111   12234479


Q ss_pred             ccccc-CccceEEEEeCHHHHHhhc-----------ccccccCC-CCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 011777          320 AKGIG-NGLPLGAVVTTPEIANVMA-----------QKIQFNTF-GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLG  386 (477)
Q Consensus       320 sK~lg-~G~pig~v~~~~~~~~~~~-----------~~~~~~t~-~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~  386 (477)
                      ||.++ .|+|+||+++++++++.+.           ......++ +.+.+++.++.++++.- .+.+.+++++..+..++
T Consensus       248 SK~~~~pGlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~r~  326 (409)
T PRK07590        248 SKTAGFTGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPE-GKAQIKELIDYYMENAK  326 (409)
T ss_pred             ccccCCcCceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHH
Confidence            99998 7999999999999886321           11122233 46778888887777521 12233333333222333


Q ss_pred             HHHHHHHhCCCceeeec-cceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCCcH
Q 011777          387 RLRTLQERHDIIGDVRG-RGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCFTK  460 (477)
Q Consensus       387 ~L~~l~~~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~  460 (477)
                      .+.+....++ +....+ .|+++|+++...        ....++.+.++ ++||++.|+..+    .+++||+  +..++
T Consensus       327 ~l~~~L~~~~-~~~~~~~g~~f~wi~~~~~--------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~--~~~~~  395 (409)
T PRK07590        327 IIREGLESAG-FEVYGGVNAPYIWVKTPDG--------MSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLS--AFGSR  395 (409)
T ss_pred             HHHHHHHhcC-CceecCCcceEEEEECCCC--------CCHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEE--ccCCH
Confidence            3333333333 222333 466888887321        11345666665 579999987433    3689996  45689


Q ss_pred             HHHHHHHHHHHHHH
Q 011777          461 DDADFLVDALDYSM  474 (477)
Q Consensus       461 e~i~~~l~~l~~~l  474 (477)
                      +++++++++|.+++
T Consensus       396 ~~l~~~l~rl~~~~  409 (409)
T PRK07590        396 ENVLEAMERIKKAL  409 (409)
T ss_pred             HHHHHHHHHHHhhC
Confidence            99999999998753

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=1.2e-22  Score=201.35  Aligned_cols=321  Identities=17%  Similarity=0.165  Sum_probs=206.3

Q ss_pred             eeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCC---CCCCEEEE
Q 011777           84 EGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMP---GNLKVVYF  160 (477)
Q Consensus        84 ~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~---~~~~~v~~  160 (477)
                      +++|.+-+...|+..+|+..|..  .+| .+|.+++++.+.+....  ...|+.+...+|++.+++++.   .+.++|++
T Consensus         7 ~~~~~~~~~~~~~~~i~l~~~~~--~~~-~p~~~~~~~~~~~~~~~--~~~Y~~~~~~~Lr~aia~~~~~~~~~~~~i~i   81 (335)
T PRK14808          7 IAKRAYPYETEKRDRTYLALNEN--PFP-FPEDLVDEVFRRLNSDT--LRIYYDSPDEELIEKILSYLDTDFLSKNNVSV   81 (335)
T ss_pred             hhccCcCCCCCCCceeEecCCCC--CCC-CCHHHHHHHHHHhhhhh--hhcCCCCChHHHHHHHHHHhCCCCCCcceEEE
Confidence            45666666778899999887654  566 47889999988765321  122444456778888888775   45789999


Q ss_pred             eCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHH
Q 011777          161 VNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDL  240 (477)
Q Consensus       161 ~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  240 (477)
                      |+|++|++..+++..      +.|++.+++|.++...+...+             ...+.+|...  .+..      ++.
T Consensus        82 t~Ga~~~i~~~~~~~------d~v~v~~P~y~~~~~~~~~~g-------------~~~~~v~~~~--~~~~------~~~  134 (335)
T PRK14808         82 GNGADEIIYVMMLMF------DRSVFFPPTYSCYRIFAKAVG-------------AKFLEVPLTK--DLRI------PEV  134 (335)
T ss_pred             cCCHHHHHHHHHHHh------CcEEECCCCHHHHHHHHHHcC-------------CeEEEecCCC--cCCC------Chh
Confidence            999999999998744      468999999988766554443             2222222211  1111      111


Q ss_pred             HHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc-ccccCCCcceeee
Q 011777          241 QDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG-FETQGVIPDIVTM  319 (477)
Q Consensus       241 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~-~~~~gv~pDivt~  319 (477)
                        .+.    .....++++| +|++|.+. +++.+++|   + +++++||+||+|..|.  +..+.. .+......-+-+|
T Consensus       135 --~~~----~~~~i~i~nP-~NPTG~~~-s~~~l~~l---~-~~~~~ii~DE~Y~~f~--~~~~~~~~~~~~~vi~~~S~  200 (335)
T PRK14808        135 --NVG----EGDVVFIPNP-NNPTGHVF-EREEIERI---L-KTGAFVALDEAYYEFH--GESYVDLLKKYENLAVIRTF  200 (335)
T ss_pred             --Hcc----CCCEEEEeCC-CCCCCCCc-CHHHHHHH---H-hcCCEEEEECchhhhc--CCchHHHHHhCCCEEEEEec
Confidence              111    2223444444 55556444 55555544   4 5899999999999884  212222 1222222334479


Q ss_pred             ccccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 011777          320 AKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDI  397 (477)
Q Consensus       320 sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~  397 (477)
                      ||.++ .|+|+||+++++++++.+....  .+++.+.+++.++.++++..+. ++..+.+.+..+++.+.|+    +.+ 
T Consensus       201 SK~~~l~GlRvG~~v~~~~~~~~l~~~~--~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~----~~g-  273 (335)
T PRK14808        201 SKAFSLAAQRIGYVVSSEKFIDAYNRVR--LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALR----EMG-  273 (335)
T ss_pred             hhhccCcccceEEEEeCHHHHHHHHHhc--CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH----HCC-
Confidence            99999 7999999999999998886544  3467788888888888863211 1222333333344444433    334 


Q ss_pred             ceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777          398 IGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDY  472 (477)
Q Consensus       398 ~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~  472 (477)
                      +....+.|.|+|+.+...         ...++.+.|.++||++...   .+++||+   ..++++.+++++.|++
T Consensus       274 ~~~~~~~g~f~~~~l~~~---------~~~~~~~~l~~~Gi~V~~~---~~~~Ris---i~~~~~~~~~~~~l~~  333 (335)
T PRK14808        274 YRITDSRGNFVFIFMEKE---------EKERLLEHLRAKNIAVRSF---REGVRIT---IGKREENDMILKELEV  333 (335)
T ss_pred             CEECCCCCeEEEEeCCCc---------cHHHHHHHHHHCCeEEEEC---CCCeEEe---cCCHHHHHHHHHHHHh
Confidence            333456788988876311         1356888999999999853   4679995   4568999999999875

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.92  E-value=6.3e-22  Score=201.36  Aligned_cols=333  Identities=16%  Similarity=0.089  Sum_probs=212.1

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccccc-------CChHHHHHHHHHHhhCCCC-CCEEEEeCChHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY-------LHHAIADFAEALASKMPGN-LKVVYFVNSGTE  166 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~-------~~~~~~~l~~~La~~~~~~-~~~v~~~~sGse  166 (477)
                      +..|||..+.      |..++.|.+++.+.+..........       ..+...++++.++++++.. .++|+|++|+|+
T Consensus        16 ~~iyld~a~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~   89 (398)
T TIGR03392        16 GTVYLDSAAT------ALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTE   89 (398)
T ss_pred             CeEEeeCccc------cCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHH
Confidence            5689996643      3467899999988775421111111       1234567889999998863 678999999999


Q ss_pred             HHHHHHHHHHh--ccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHH
Q 011777          167 ANELAMLMARL--STGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHI  244 (477)
Q Consensus       167 A~~~Al~~ar~--~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i  244 (477)
                      ++..++.....  ..++++||+.++.|++..........         ..|+..+.+|.......+      .+++++++
T Consensus        90 ~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~---------~~g~~v~~v~~~~~~~~~------~~~l~~~i  154 (398)
T TIGR03392        90 SINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQ---------QTGAKVVKLPIGADLLPD------IRQLPELL  154 (398)
T ss_pred             HHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHH---------HcCcEEEEEecCCCCCcC------HHHHHHHh
Confidence            99999876521  23567888888888764221111100         012222222221111111      47788777


Q ss_pred             hccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--cc
Q 011777          245 DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KG  322 (477)
Q Consensus       245 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~  322 (477)
                      .    +++++|++..+++++|.+.+    +++|.++|++||+++|+|++|+ ++..     ..+.....+|+.++|  |.
T Consensus       155 ~----~~t~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~~-----~~~~~~~~~d~~~~s~~K~  220 (398)
T TIGR03392       155 T----PRTRILALGQMSNVTGGCPD----LARAITLAHQYGAVVVVDGAQG-VVHG-----PPDVQALDIDFYAFSGHKL  220 (398)
T ss_pred             c----cCceEEEEECccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCC-----CCChhhcCCCEEEEecccc
Confidence            5    35677888778888888877    8999999999999999999996 3321     122223457888888  96


Q ss_pred             ccCccceEEEEeCHHHHHhhccccccc---------------------CCCCcHHHHHHHHHHHHhhchh---hHHHHHH
Q 011777          323 IGNGLPLGAVVTTPEIANVMAQKIQFN---------------------TFGGNPVCSAGGLAVLRVIDKE---RRQAHCA  378 (477)
Q Consensus       323 lg~G~pig~v~~~~~~~~~~~~~~~~~---------------------t~~~~~~~~aaa~a~l~~l~~~---~~~~~~~  378 (477)
                      +|. .++|++++++++++.+.....++                     .-+.|..+.++..++++.+.+.   +..++..
T Consensus       221 ~gp-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~  299 (398)
T TIGR03392       221 YGP-TGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSV  299 (398)
T ss_pred             cCC-CceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            653 34899999999887764321110                     0123455667777777776543   3344445


Q ss_pred             HHHHHHHHHHHHHHHhCCCceee-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC----------CC
Q 011777          379 DVGSHLLGRLRTLQERHDIIGDV-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL----------HG  447 (477)
Q Consensus       379 ~~~~~l~~~L~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----------~~  447 (477)
                      ++.+++++.|.+    .+.+.-. ...+.++.+.+..         ....++.+.|.++||.+..+..          ..
T Consensus       300 ~l~~~l~~~l~~----l~g~~~~~~~~~~i~~~~~~~---------~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~  366 (398)
T TIGR03392       300 SLADLAEERLAQ----LPGFRSFRCPGSSLLAFDFAG---------VHHSDLAALLAESGIALRAGQHCAQPLMAALGVS  366 (398)
T ss_pred             HHHHHHHHHHhc----CCCeEEeCCCCCcEEEEEeCC---------cCHHHHHHHHHhCCEEEecCccchHHHHHHhCCC
Confidence            555555555443    3222111 1223455555421         1135678888999999987631          14


Q ss_pred             CEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          448 NVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       448 ~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +++|++++..+|++|++++++.|++++++
T Consensus       367 ~~iRvS~~~~~t~~ei~~l~~~l~~~~~~  395 (398)
T TIGR03392       367 GTLRASFAPYNTQQDVDALVDAVGAALEL  395 (398)
T ss_pred             CEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999998765

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.92  E-value=1.1e-22  Score=202.08  Aligned_cols=307  Identities=16%  Similarity=0.082  Sum_probs=200.7

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCC-CCEEEEeCChHHHHHHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGN-LKVVYFVNSGTEANELAMLM  174 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~-~~~v~~~~sGseA~~~Al~~  174 (477)
                      ..++||.++.  +++|.+.+.+..   ..+       ..|+.+. .+|++.|+++++.. .++|+++||++|++.....+
T Consensus        24 ~~~i~ls~Ne--np~~~~~~~~~~---~~~-------~~Yp~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~~   90 (339)
T PRK06959         24 DAWLDLSTGI--NPHGYPVPPVPA---DAW-------RRLPEDD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPAL   90 (339)
T ss_pred             hhhceeccCC--CCCCCCCCCCCH---HHH-------HhCCCch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHHh
Confidence            4679998888  578866333321   112       1356555 89999999998765 47999999999999865442


Q ss_pred             HHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeE
Q 011777          175 ARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAG  254 (477)
Q Consensus       175 ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~  254 (477)
                         ..+ +++++.+++|.++...+...             |...++++.      +  .    +.+++       ....+
T Consensus        91 ---~~~-g~v~v~~P~y~~y~~~~~~~-------------g~~~~~v~~------~--~----~~~~~-------~~~~v  134 (339)
T PRK06959         91 ---LPR-GRVGIAPLAYSEYAPAFARH-------------GHRVVPLDE------A--A----DTLPA-------ALTHL  134 (339)
T ss_pred             ---cCC-CeEEEcCCCcHHHHHHHHHC-------------CCEEEeecc------c--c----hhccc-------cCCEE
Confidence               223 35888999998875554333             222222221      0  0    11111       11257


Q ss_pred             EEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeeccccc-CccceEEEE
Q 011777          255 FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIG-NGLPLGAVV  333 (477)
Q Consensus       255 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg-~G~pig~v~  333 (477)
                      ++++|. |++| ...+.+.++++.+.|+++++++|+||+|..|.... ............-+-||||.+| .|+|+||++
T Consensus       135 ~l~nPn-NPTG-~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~-s~~~~~~~~~vi~l~SfSK~~gl~GlRiGy~v  211 (339)
T PRK06959        135 IVVNPN-NPTA-ERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAA-SLAAHTDRPGLVVLRSVGKFFGLAGVRAGFVL  211 (339)
T ss_pred             EEeCCC-CCCC-CCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcc-cchhccCCCCEEEEecChhhcCCcchheEEEe
Confidence            888885 5566 45578889999999999999999999999885322 2222211111122337999999 799999999


Q ss_pred             eCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc-hhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEE
Q 011777          334 TTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID-KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMEL  412 (477)
Q Consensus       334 ~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~-~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~  412 (477)
                      +++++++.+....  ..|+.|.+++.++.++|+..+ .+...+.+++.++++.+.|++    ++..  +...++++|+.+
T Consensus       212 ~~~~li~~l~~~~--~~~~vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~----~g~~--~~~~~~f~~~~~  283 (339)
T PRK06959        212 AAPALLAALRDAL--GAWTVSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRA----HGFA--VHATPLFSWTDD  283 (339)
T ss_pred             cCHHHHHHHHHhc--CCCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH----CCCC--ccCcceEEEEeC
Confidence            9999999887643  456678899999988886311 122334444444555555444    3321  223466777764


Q ss_pred             eeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          413 VTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .           ...++.+.|.++||++...+ ..+++||+  ...+++|+++++++|+++++.
T Consensus       284 ~-----------~~~~l~~~l~~~GI~vr~~~-~~~~lRis--i~~~~~e~~~l~~al~~~~~~  333 (339)
T PRK06959        284 P-----------RAAALHAALARRGIWTRYFA-PPPSVRFG--LPADEAEWQRLEDALAECVPT  333 (339)
T ss_pred             C-----------CHHHHHHHHHhCCeEEEECC-CCCeEEEE--CCCCHHHHHHHHHHHHHHHHH
Confidence            1           13568889999999998653 24689995  335788999999999987753

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=1.6e-22  Score=203.76  Aligned_cols=328  Identities=16%  Similarity=0.117  Sum_probs=207.6

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLM  174 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~  174 (477)
                      +..++||..|..  ++| .+|.+.+++.+......    .|.+..-.+|++.++++++.+.++|++|+|+++++..+++.
T Consensus        35 ~~~~i~l~~~~~--~~~-~~~~~~~al~~~~~~~~----~Y~~~~g~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~  107 (371)
T PRK05166         35 VPRIAKLGSNEN--PLG-PSPAVRRAFADIAELLR----LYPDPQGRALREAIAARTGVPADRIILGNGSEDLIAVICRA  107 (371)
T ss_pred             CcceEEcCCCCC--CCC-CCHHHHHHHHHHHHHhh----cCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHH
Confidence            446899887754  466 57889998876544321    24433334788999998877778899999999999988875


Q ss_pred             HHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeE
Q 011777          175 ARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAG  254 (477)
Q Consensus       175 ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~  254 (477)
                      ..  .+++.|++..++|.+........             |.....++......++      .+++++.++    +++++
T Consensus       108 ~~--~~gd~vli~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~------~~~l~~~~~----~~~~~  162 (371)
T PRK05166        108 VL--RPGDRVVTLYPSFPLHEDYPTMM-------------GARVERVTVTPDLGFD------LDALCAAVA----RAPRM  162 (371)
T ss_pred             hc--CCCCEEEEcCCChHHHHHHHHHc-------------CCeEEEeecCCCCCCC------HHHHHHhhh----cCCCE
Confidence            52  35678999999997654332221             2222222221111122      467777765    23344


Q ss_pred             EEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc-CCCcc---eeeeccccc-Cccce
Q 011777          255 FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ-GVIPD---IVTMAKGIG-NGLPL  329 (477)
Q Consensus       255 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~-gv~pD---ivt~sK~lg-~G~pi  329 (477)
                      |++...+|++|. ..+.+.+++|.++|++ ++++|+||+|..|...+.....+... ...+.   +-+|||.++ .|+|+
T Consensus       163 v~l~~p~NPtG~-~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRi  240 (371)
T PRK05166        163 LMFSNPSNPVGS-WLTADQLARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRV  240 (371)
T ss_pred             EEEeCCCCCCCC-CCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhhe
Confidence            555444566674 5577788888888865 89999999999886332111111111 11122   336999999 79999


Q ss_pred             EEEEe-CHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeE
Q 011777          330 GAVVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMV  408 (477)
Q Consensus       330 g~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~  408 (477)
                      ||+++ ++++++.+....  ..++.|.+++.++.+++..   +++.++..+.....++.+.+..++++. ...++.|.++
T Consensus       241 G~~i~~~~~l~~~~~~~~--~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~r~~l~~~L~~~g~-~~~p~~g~fl  314 (371)
T PRK05166        241 GYGLVSDPELVGLLDRVR--TPFNVNGAAQAAALAALDD---EEHLAKGVALALAERERLKKELAEMGY-RIAPSRANFL  314 (371)
T ss_pred             eeeecCCHHHHHHHHHhc--cCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHHCcC-eeCCCcCCEE
Confidence            99775 688888776433  3567788888888887752   233333333333333334333333443 2345568888


Q ss_pred             EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--CCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          409 GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--HGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       409 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      |+.+..          ...++.+.|+++||.+.++..  ..+++||+..   ++++.+++++.|++++.
T Consensus       315 ~~~~~~----------~~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~~~---~~~~~~~l~~~l~~i~~  370 (371)
T PRK05166        315 FFDARR----------PASAVAEALLRQGVIVKPWKQPGFETFIRVSIG---SPEENDHFVAALDKVLE  370 (371)
T ss_pred             EEeCCC----------CHHHHHHHHHHCCeEEecCCCCCCCCeEEEEcC---CHHHHHHHHHHHHHHhh
Confidence            876521          135688899999999998742  2578999654   57778888888887653

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.91  E-value=7.4e-23  Score=202.90  Aligned_cols=283  Identities=15%  Similarity=0.072  Sum_probs=184.9

Q ss_pred             ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCC
Q 011777          134 IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ  213 (477)
Q Consensus       134 ~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~  213 (477)
                      .|+.+...+|++.|++.+....++|++|+|++|++..++++ .  .+ +++++.+++|..+...+...+           
T Consensus        36 ~Yp~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~~-~--~~-~~vv~~~P~y~~y~~~~~~~G-----------  100 (332)
T PRK06425         36 IYPEISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLSY-I--NV-GNIIIVEPNFNEYKGYAFTHG-----------  100 (332)
T ss_pred             cCcCcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHH-h--CC-CcEEEeCCChHHHHHHHHHcC-----------
Confidence            47777789999999999988888999999999999998863 2  23 468888999988766554442           


Q ss_pred             CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCee-EEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcC
Q 011777          214 GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA-GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADE  292 (477)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a-~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  292 (477)
                        ...+.+|...   ++.+    .+    .++.   .+++ .++++| +|++| ...+.+.+++|.++|++||++||+||
T Consensus       101 --~~v~~vp~~~---~~~~----~~----~l~~---~~~k~v~l~nP-~NPTG-~~~s~~~~~~l~~~a~~~~~~iI~DE  162 (332)
T PRK06425        101 --IRISALPFNL---INNN----PE----ILNN---YNFDLIFIVSP-DNPLG-NLISRDSLLTISEICRKKGALLFIDE  162 (332)
T ss_pred             --CeEEEEeCCc---ccCc----HH----HHhh---cCCCEEEEeCC-CCCcC-CccCHHHHHHHHHHHHHcCCEEEEec
Confidence              2222222210   1111    12    2221   1334 444555 55666 45688899999999999999999999


Q ss_pred             cccCccCCCCCCccccc---cCCCcceeeeccccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhh
Q 011777          293 VQTGFGRTGSHYWGFET---QGVIPDIVTMAKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVI  368 (477)
Q Consensus       293 v~~gfgr~G~~~~~~~~---~gv~pDivt~sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l  368 (477)
                      +|..|...+ ..-....   .+...-+-||||.++ .|+|+||+++++++++.+....  ..++.+.+++.+    +...
T Consensus       163 ~Y~~~~~~~-~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~~li~~l~~~~--~~~~~~~~~~~~----l~~~  235 (332)
T PRK06425        163 AFIDFVPNR-AEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDYNMKISRKIT--EPWSVCDPAIDF----IRSI  235 (332)
T ss_pred             chhcccccc-chhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCHHHHHHHHHcC--CCCccCHHHHHH----HHHh
Confidence            999886433 1111111   122223347999999 8999999999999998887543  334444443322    2222


Q ss_pred             chhh----HHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC
Q 011777          369 DKER----RQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG  444 (477)
Q Consensus       369 ~~~~----~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~  444 (477)
                      ..+.    ..+.+++..+++.+.|++    ++......+.|.|+++.+.           ...++.+.|+++||.+.++.
T Consensus       236 ~~~~~~~~~~~~~~~~r~~l~~~L~~----~g~~~~~~~~g~f~~~~~~-----------~~~~~~~~l~~~gi~v~~~~  300 (332)
T PRK06425        236 DLDYVAKHSLDIMENERSYLINNLEA----MGFRAAGDPSANFITFMIP-----------DAHDFYSYLLKNGILVRLLD  300 (332)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH----CCCEECCCCCceEEEEEcC-----------CHHHHHHHHHHCCeEEEECC
Confidence            2222    334444444444444443    3422112456888888762           14578889999999999885


Q ss_pred             CC----CCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          445 LH----GNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       445 ~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      .+    .+++||+   ..++++.++++++|++++
T Consensus       301 ~f~~~~~~~iRis---~~~~~~~~~l~~al~~~~  331 (332)
T PRK06425        301 DYECLGEQYIRIA---IRRRSFNIKLVNALRNFL  331 (332)
T ss_pred             CCCCCCCCEEEEE---eCCHHHHHHHHHHHHHHh
Confidence            44    3699995   347899999999999876

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.91  E-value=5.4e-22  Score=199.94  Aligned_cols=318  Identities=17%  Similarity=0.114  Sum_probs=202.3

Q ss_pred             CCCHHHHHHHHHHHhhccccccccC--ChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc--cCCceEEEE
Q 011777          112 HCHPDVLNAIFEQSKLLQHATTIYL--HHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS--TGNLGMIAL  187 (477)
Q Consensus       112 h~~p~v~~Av~~~l~~~~~~~~~~~--~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~--~~~~~ii~~  187 (477)
                      |++|++++++.+++.........+.  .....+++++|+++++.+.+.++|++||++|+..+++.++..  .++++|++.
T Consensus        31 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~  110 (371)
T PRK13520         31 EPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVP  110 (371)
T ss_pred             CchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEec
Confidence            6899999999998875322222222  233478999999998765556889999999999999988654  235678887


Q ss_pred             ccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCee
Q 011777          188 RNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAV  267 (477)
Q Consensus       188 ~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~  267 (477)
                      ++++..+...+...             |.....+|.......+      .++|++.++    +++++|++...++++|.+
T Consensus       111 ~~~h~s~~~~~~~~-------------g~~~~~v~~~~~~~~d------~~~l~~~i~----~~~~~vi~~~~~~~tG~~  167 (371)
T PRK13520        111 ESAHFSFDKAADML-------------GVELRRAPLDDDYRVD------VKAVEDLID----DNTIGIVGIAGTTELGQV  167 (371)
T ss_pred             CcchHHHHHHHHHc-------------CceEEEecCCCCCcCC------HHHHHHHHh----hCCEEEEEEcCCcCCccc
Confidence            77665432221111             2222222221111111      578888886    234444433345667877


Q ss_pred             eCCchhHHHHHHHHHHhCcEEEEcCcccCccC--CCC-CCccccccCCCcceeee--cccccCccceEEEEe-CHHHHHh
Q 011777          268 ELAPGYLKLVYDIVRKAGGVCIADEVQTGFGR--TGS-HYWGFETQGVIPDIVTM--AKGIGNGLPLGAVVT-TPEIANV  341 (477)
Q Consensus       268 ~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr--~G~-~~~~~~~~gv~pDivt~--sK~lg~G~pig~v~~-~~~~~~~  341 (477)
                      .+    +++|.++|++||+++|+||+|+++..  ... ..+.+...  ..|.+++  .|...+|+|+|+++. ++++.+.
T Consensus       168 ~~----l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~--~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~  241 (371)
T PRK13520        168 DP----IPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLP--GVDSITIDPHKMGLAPIPAGGILFRDESYLDA  241 (371)
T ss_pred             CC----HHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCC--CCceEEECCccccCccCCceEEEEcCHHHHHh
Confidence            77    99999999999999999999986631  110 11222222  3465554  364445789987776 5557666


Q ss_pred             hcccc----------cccCCCCcHHHHHHHHHHHHhhchh---hHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeE
Q 011777          342 MAQKI----------QFNTFGGNPVCSAGGLAVLRVIDKE---RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMV  408 (477)
Q Consensus       342 ~~~~~----------~~~t~~~~~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~  408 (477)
                      +....          ..+|.  ++..++++.++|+.+.++   +..++..++.++++++|+++    +..........++
T Consensus       242 l~~~~~~~~~~~~~~~~gt~--~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~v  315 (371)
T PRK13520        242 LAVDTPYLTSKKQATLTGTR--SGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER----GFEPVIEPVLNIV  315 (371)
T ss_pred             hcccCccccCCCCcceEeec--cChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC----CCEEecCCCceEE
Confidence            54211          01122  334577777888776554   35677777777887777664    2211122334455


Q ss_pred             EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          409 GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       409 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .+.+.           ...++.+.|.++||.+..+. ..+++|++++..+|++||+++++.|++++++
T Consensus       316 ~~~~~-----------~~~~v~~~L~~~gi~v~~~~-~~~~iRis~~~~~t~edi~~~~~~l~~~~~~  371 (371)
T PRK13520        316 AFDDP-----------NPDEVREKLRERGWRVSVTR-CPEALRIVCMPHVTREHIENFLEDLKEVKKR  371 (371)
T ss_pred             EEecC-----------CHHHHHHHHHHCCceeccCC-CCCEEEEEEECCCCHHHHHHHHHHHHHHhhC
Confidence            55541           14578889999999988753 3568999888889999999999999988753

>PRK09265 aminotransferase AlaT; Validated

Probab=99.91  E-value=6.7e-22  Score=201.45  Aligned_cols=343  Identities=14%  Similarity=0.084  Sum_probs=207.2

Q ss_pred             CCCEEEeecCCcccccCCC-CCHHHHHHHHHHHhhccccccccCCh-HHHHHHHHHHhhC------CCCCCEEEEeCChH
Q 011777           94 NGRRYLDAFAGIVTVSCGH-CHPDVLNAIFEQSKLLQHATTIYLHH-AIADFAEALASKM------PGNLKVVYFVNSGT  165 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh-~~p~v~~Av~~~l~~~~~~~~~~~~~-~~~~l~~~La~~~------~~~~~~v~~~~sGs  165 (477)
                      .|+..+||..|... ++++ .++++.+++.+.+....    .|..+ ...+|++.+++++      +.+.++|++++|++
T Consensus        31 ~~~~~i~l~~g~p~-~~~~~~~~~i~~~~~~~~~~~~----~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~  105 (404)
T PRK09265         31 EGHKILKLNIGNPA-PFGFEAPDEILRDVIRNLPTAQ----GYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVS  105 (404)
T ss_pred             cCCCeEEecCCCCC-cCCCCCCHHHHHHHHHHhhcCC----CCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChH
Confidence            56678888877553 3454 46789998887665321    12222 1335555555544      45567899999999


Q ss_pred             HHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHh
Q 011777          166 EANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHID  245 (477)
Q Consensus       166 eA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~  245 (477)
                      +++..+++...  .+++.|++.+++|..+.......+             ...+.++......+..|    .+++++.+.
T Consensus       106 ~~l~~~~~~~~--~~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~v~~~~~~~~~~~~d----~~~l~~~~~  166 (404)
T PRK09265        106 ELIVMAMQALL--NNGDEVLVPAPDYPLWTAAVSLSG-------------GKPVHYLCDEEAGWFPD----LDDIRSKIT  166 (404)
T ss_pred             HHHHHHHHHhC--CCCCEEEEeCCCCcChHHHHHHcC-------------CEEEEEecccccCCCCC----HHHHHHhcc
Confidence            99999887653  356789999999986544432221             11111111111111111    366777664


Q ss_pred             ccCCCCeeE-EEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc-C--CCcceeeecc
Q 011777          246 FGTSGKVAG-FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ-G--VIPDIVTMAK  321 (477)
Q Consensus       246 ~~~~~~~a~-vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~-g--v~pDivt~sK  321 (477)
                          .++++ +++.| +|++| ...+.+.+++|.++|++||+++|+||+|.+|.+.+.....+... .  ...-+-+|||
T Consensus       167 ----~~~~~v~l~~P-~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK  240 (404)
T PRK09265        167 ----PRTKAIVIINP-NNPTG-AVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSK  240 (404)
T ss_pred             ----ccceEEEEECC-CCCCC-cCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchh
Confidence                24444 55555 56667 45578889999999999999999999999886544221121111 1  1112236899


Q ss_pred             ccc-CccceEEEEe--CHH----HHHhhcccccccCCCCcHHHHHHHHHHHHhhch-hhHHH---HHHHHHHHHHHHHHH
Q 011777          322 GIG-NGLPLGAVVT--TPE----IANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK-ERRQA---HCADVGSHLLGRLRT  390 (477)
Q Consensus       322 ~lg-~G~pig~v~~--~~~----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~---~~~~~~~~l~~~L~~  390 (477)
                      .++ .|+|+||+++  +++    +++.+... ...+++.|.+++.++.++|+..+. +.+.+   ++.+..+.+.+.|  
T Consensus       241 ~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L--  317 (404)
T PRK09265        241 AYRVAGFRVGWMVLSGPKKHAKGYIEGLDML-ASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELL--  317 (404)
T ss_pred             hccCcccceEEEEEeCchHHHHHHHHHHHHH-hccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHH--
Confidence            996 5999999996  443    33333211 223567788889988888853211 11221   2333333333333  


Q ss_pred             HHHhCCCceee-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC----CCEEEEeCCCCCcHHHHHH
Q 011777          391 LQERHDIIGDV-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH----GNVFRIKPPMCFTKDDADF  465 (477)
Q Consensus       391 l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~  465 (477)
                        ++++.+... +..|+++|+.+.......   ......+.+.+.++||.+.|+..+    .+++|++.  ..+++++++
T Consensus       318 --~~~~~~~~~~p~~g~~l~~~~~~~~~~~---~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~--~~~~e~l~~  390 (404)
T PRK09265        318 --NAIPGVSCVKPKGALYAFPKLDPKVYPI---HDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVT--LPRVDDLEE  390 (404)
T ss_pred             --hcCCCCcccCCCcceEEEEEecccccCC---CCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEe--CCCHHHHHH
Confidence              334333323 334678888774211000   012345677888999999987543    46899975  468999999


Q ss_pred             HHHHHHHHHhh
Q 011777          466 LVDALDYSMSK  476 (477)
Q Consensus       466 ~l~~l~~~l~~  476 (477)
                      ++++|.+++++
T Consensus       391 ~l~rl~~~l~~  401 (404)
T PRK09265        391 AIGRIGRFLSG  401 (404)
T ss_pred             HHHHHHHHHHH
Confidence            99999998864

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.91  E-value=1.9e-22  Score=199.92  Aligned_cols=303  Identities=11%  Similarity=0.033  Sum_probs=198.4

Q ss_pred             CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEcc--C
Q 011777          113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRN--A  190 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~--~  190 (477)
                      .||+|.++..+.+++..     +..+...+|+++|+++++.+.+.+++++||++||..++....  .+++.|+++.+  .
T Consensus        34 ~~~~~~~~~~~~~~~~~-----g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~--~~gd~Vli~~~d~p  106 (346)
T TIGR03576        34 GGFKIDEEDLELLETYV-----GPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALE--PPGRKVVHYLPEKP  106 (346)
T ss_pred             CChhHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhC--CCCCEEEECCCCCC
Confidence            59999999999988742     356889999999999997766899999999999999987543  24566765322  3


Q ss_pred             ccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCC
Q 011777          191 YHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELA  270 (477)
Q Consensus       191 yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~  270 (477)
                      +|..........+            ......        . +    +++++.    .  .++++|++++. ++.|.+. +
T Consensus       107 ~~~s~~~~~~l~g------------a~~~~~--------~-~----l~~l~~----~--~~~~lIiitg~-s~~G~v~-~  153 (346)
T TIGR03576       107 AHPSIPRSCKLAG------------AEYFES--------D-E----LSELKK----I--DGTSLVVITGS-TMDLKVV-S  153 (346)
T ss_pred             CchhHHHHHHHcC------------CEEecc--------C-C----HHHHhh----C--cCceEEEEECC-CCCCccc-C
Confidence            4443322222221            111100        0 1    233321    1  23567777764 5566543 5


Q ss_pred             chhHHHHHHHHHHhCcEEEEcCcccCcc--CCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccc
Q 011777          271 PGYLKLVYDIVRKAGGVCIADEVQTGFG--RTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQF  348 (477)
Q Consensus       271 ~~~l~~l~~l~~~~gillI~DEv~~gfg--r~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~  348 (477)
                      ++.|++|.++|++||+++|+||+|..+.  ..| .. ....++...-+.||||++ +|+++||+++++++++.+......
T Consensus       154 ~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~-~~-~~~~~~~divv~s~SKal-aG~r~G~v~~~~~li~~l~~~~~~  230 (346)
T TIGR03576       154 EEDLKRVIKQAKSKEAIVLVDDASGARVRRLYG-QP-PALDLGADLVVTSTDKLM-DGPRGGLLAGRKELVDKIKSVGEQ  230 (346)
T ss_pred             HHHHHHHHHHHHHcCCEEEEECCccccccccCC-CC-CHHHcCCcEEEeccchhc-cccceEEEEeCHHHHHHHHHhhcC
Confidence            7779999999999999999999997431  112 11 112233222244789965 367899999999999998876555


Q ss_pred             cCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHH
Q 011777          349 NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAV  428 (477)
Q Consensus       349 ~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~  428 (477)
                      ..++.+++.++++.++|+.+..+...+.++++.+.+.+.++.    ....  ..+ +.|+++++...      +  ..+.
T Consensus       231 ~~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~~----~~~~--~~~-~~f~~~~~~~~------~--~~~~  295 (346)
T TIGR03576       231 FGLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFDK----LNVE--RTP-TGFVIKGVEEE------K--LIEI  295 (346)
T ss_pred             cccCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHh----CCCC--cCC-CeEEEEeCCCC------C--HHHH
Confidence            556678889999999998755444556666666665555543    2211  123 33666665210      1  1245


Q ss_pred             HHHHHHHcCceeeccCCC---CCEEEEeCCCCCcHH---HHHHHHHHHHHHHh
Q 011777          429 LFEKLRELGVLVGKGGLH---GNVFRIKPPMCFTKD---DADFLVDALDYSMS  475 (477)
Q Consensus       429 ~~~~l~~~Gv~v~~~~~~---~~~iRi~p~~~~t~e---~i~~~l~~l~~~l~  475 (477)
                      +.+.|.++||++.|+..+   ++++||+.  ...++   +++.++++|++.++
T Consensus       296 ~~~ll~~~gV~v~~~~~f~~~~~~vRis~--~~~~~~~~~~~~~~~al~~~~~  346 (346)
T TIGR03576       296 GLDLLRNYGIITITAVGMPGASKTLRFDL--AAKDAERIGDDYLVEAVKDSLK  346 (346)
T ss_pred             HHHHHHhCCEEEeCCcccCCCCCeEEEEE--ecChHHhcCHHHHHHHHHhccC
Confidence            667788899999997433   57999954  34444   79999999988653

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PLN02721 threonine aldolase

Probab=99.91  E-value=4.1e-22  Score=199.41  Aligned_cols=334  Identities=16%  Similarity=0.141  Sum_probs=203.9

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR  176 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar  176 (477)
                      +++||.++.+.    ..+|.+.+++.+.  ..... ..+..+...+|++.|+++++.  +.++++++|++++..++....
T Consensus         6 ~~~~~~~~~~~----~~~~~~~~a~~~~--~~~~~-~~~~~~~~~~l~~~la~~~~~--~~~~~~~~Gs~a~~~~l~~~~   76 (353)
T PLN02721          6 RVVDLRSDTVT----KPTDAMRAAMANA--EVDDD-VLGYDPTALRLEEEMAKIFGK--EAALFVPSGTMGNLISVLVHC   76 (353)
T ss_pred             hhhhhhccccc----CCCHHHHHHHHhc--cCCCc-ccCCCHHHHHHHHHHHHHhCC--ceeEEecCccHHHHHHHHHHc
Confidence            56788888765    3688999998763  11121 234566688999999999965  457899999999988877643


Q ss_pred             hccCCceEEEEccCccCCccc--ccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc---CCCC
Q 011777          177 LSTGNLGMIALRNAYHGGSSG--TIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG---TSGK  251 (477)
Q Consensus       177 ~~~~~~~ii~~~~~yhG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~---~~~~  251 (477)
                      . .+++.|++.+++|......  ....            .|.....+|...  .+..|    .+++++.++..   +.++
T Consensus        77 ~-~~gd~Vl~~~~~~~~~~~~~~~~~~------------~g~~~~~v~~~~--~~~~d----~~~l~~~i~~~~~~~~~~  137 (353)
T PLN02721         77 D-VRGSEVILGDNSHIHLYENGGISTL------------GGVHPRTVKNNE--DGTMD----LDAIEAAIRPKGDDHFPT  137 (353)
T ss_pred             c-CCCCeEEEcCccceehhcccchhhh------------cCceeEecCCCc--CCCcC----HHHHHHHHHhccCCCCCc
Confidence            2 1567888888876432221  1111            122222222111  11112    57888877621   1146


Q ss_pred             eeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccC---CCCCCccccccCCCcceeeecccccCccc
Q 011777          252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGR---TGSHYWGFETQGVIPDIVTMAKGIGNGLP  328 (477)
Q Consensus       252 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr---~G~~~~~~~~~gv~pDivt~sK~lg~G~p  328 (477)
                      +++|++++++++.|...++.+++++|.++|++||+++|+||+|. ++-   .+...... ..+..--++++||++++  |
T Consensus       138 ~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~-~~~~~~~~~~~~~~-~~~~d~~~~s~sK~l~~--~  213 (353)
T PLN02721        138 TRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARI-FNASVALGVPVHRL-VKAADSVSVCLSKGLGA--P  213 (353)
T ss_pred             ceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhh-hcchhhhCCCHHHH-hhhCCEEEEecccccCC--c
Confidence            78899988766544466788999999999999999999999985 321   11000000 11222224578999874  5


Q ss_pred             eEE-EEeCHHHHHhhcccccccCCCCc--HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCc-e-eeec
Q 011777          329 LGA-VVTTPEIANVMAQKIQFNTFGGN--PVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDII-G-DVRG  403 (477)
Q Consensus       329 ig~-v~~~~~~~~~~~~~~~~~t~~~~--~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~-~-~v~g  403 (477)
                      +|+ +++++++++.+.........+.+  ...+++++.+++... + ..++..++.+++.+.|+++    +.+ . ....
T Consensus       214 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~  287 (353)
T PLN02721        214 VGSVIVGSKSFIRKAKRLRKTLGGGMRQVGVLAAAALVALQENV-P-KLEDDHKKAKLLAEGLNQI----KGLRVNVAAV  287 (353)
T ss_pred             eeeEEecCHHHHHhHHHHHHhcCCCeehhHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHhC----CCcEEecCCc
Confidence            665 67888888765443211111111  223333444443211 1 1233344455666655543    222 1 1233


Q ss_pred             cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          404 RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       404 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .+.++++.+....      ......+.+.|.++||.+.+++  .+++|+++++.++++|+++++++|++++..
T Consensus       288 ~~~~~~~~~~~~~------~~~~~~~~~~L~~~gi~v~~~~--~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~  352 (353)
T PLN02721        288 ETNIVYFDITDGS------RITAEKLCKSLEEHGVLLMPGN--SSRIRVVTHHQISDSDVQYTLSCFQQAALT  352 (353)
T ss_pred             cceEEEEEccCCc------cccHHHHHHHHHhCCcEEecCC--CceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence            4567777763210      0124678999999999999875  578999999899999999999999998764

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.91  E-value=1.5e-21  Score=198.73  Aligned_cols=333  Identities=16%  Similarity=0.088  Sum_probs=213.3

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccc-------cCChHHHHHHHHHHhhCCC-CCCEEEEeCChHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI-------YLHHAIADFAEALASKMPG-NLKVVYFVNSGTE  166 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~-------~~~~~~~~l~~~La~~~~~-~~~~v~~~~sGse  166 (477)
                      +..|||..+.      |..++.|.+++.+.+.........       ...+...++++.++++++. +.+.|+|++|+|+
T Consensus        19 ~~~yld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~   92 (401)
T PRK10874         19 AGVYLDSAAT------ALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTE   92 (401)
T ss_pred             ceEEEeCCcc------cCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHH
Confidence            4679996543      336789999998888653211111       1134467888999999987 6789999999999


Q ss_pred             HHHHHHHHHH--hccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHH
Q 011777          167 ANELAMLMAR--LSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHI  244 (477)
Q Consensus       167 A~~~Al~~ar--~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i  244 (477)
                      ++..+++...  ...++++||+.++.|++...........         .|+....++.......+      ++++++.+
T Consensus        93 ~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~---------~g~~v~~v~~~~~~~~d------~~~l~~~i  157 (401)
T PRK10874         93 SINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQ---------TGAKVVKLPLGADRLPD------VDLLPELI  157 (401)
T ss_pred             HHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHH---------hCCEEEEEecCCCCcCC------HHHHHHhc
Confidence            9999988652  1245678999888887632211111000         12222222211111111      47788777


Q ss_pred             hccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--cc
Q 011777          245 DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KG  322 (477)
Q Consensus       245 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~  322 (477)
                      +    +++++|++..+++.+|.+.+    +++|.++|+++|+++|+|++|+ +|..     ..+.....+|++++|  |.
T Consensus       158 ~----~~t~lv~i~~~~n~tG~~~~----~~~i~~l~~~~g~~~ivD~a~~-~g~~-----~~~~~~~~~d~~~~s~~K~  223 (401)
T PRK10874        158 T----PRTRILALGQMSNVTGGCPD----LARAITLAHQAGMVVMVDGAQG-AVHF-----PADVQALDIDFYAFSGHKL  223 (401)
T ss_pred             C----cCcEEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEECCcc-cccc-----cCCchhcCCCEEEEecccc
Confidence            5    35677878778888888877    8999999999999999999996 3321     122223457877655  96


Q ss_pred             ccCccceEEEEeCHHHHHhhccccccc---------------------CCCCcHHHHHHHHHHHHhhchh---hHHHHHH
Q 011777          323 IGNGLPLGAVVTTPEIANVMAQKIQFN---------------------TFGGNPVCSAGGLAVLRVIDKE---RRQAHCA  378 (477)
Q Consensus       323 lg~G~pig~v~~~~~~~~~~~~~~~~~---------------------t~~~~~~~~aaa~a~l~~l~~~---~~~~~~~  378 (477)
                      +|. ..+|++++++++.+.+.....++                     ..+.|..++++..++++.+.+.   +..++.+
T Consensus       224 ~gp-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~  302 (401)
T PRK10874        224 YGP-TGIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSR  302 (401)
T ss_pred             cCC-CccEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            652 24699999999887765321110                     0123555667777777766443   3345555


Q ss_pred             HHHHHHHHHHHHHHHhCCCceee-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC----------CC
Q 011777          379 DVGSHLLGRLRTLQERHDIIGDV-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL----------HG  447 (477)
Q Consensus       379 ~~~~~l~~~L~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----------~~  447 (477)
                      ++.+++++.|++    ++.+... ...+.++.+.+..         ....++.+.|.++||.+.++..          ..
T Consensus       303 ~l~~~l~~~l~~----~~g~~~~~~~~~~i~~~~~~~---------~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~  369 (401)
T PRK10874        303 SLATLAEDALAK----LPGFRSFRCQDSSLLAFDFAG---------VHHSDLVTLLAEYGIALRAGQHCAQPLLAALGVT  369 (401)
T ss_pred             HHHHHHHHHHhc----CCCEEEeCCCCCcEEEEEECC---------cCHHHHHHHHHHCCcEEeccccchHHHHHHhCCC
Confidence            555555555544    3322222 1234455555521         1135677888899999987532          13


Q ss_pred             CEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          448 NVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       448 ~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +++|+++...+|++||+++++.|+++++.
T Consensus       370 ~~iRiS~~~~nt~edid~ll~al~~~~~~  398 (401)
T PRK10874        370 GTLRASFAPYNTQSDVDALVNAVDRALEL  398 (401)
T ss_pred             CEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999998765

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.91  E-value=4e-22  Score=181.50  Aligned_cols=341  Identities=17%  Similarity=0.187  Sum_probs=234.0

Q ss_pred             ccCceeEEeeeccEEEeCCC--CEEEeecCCcccccCCC-CCHHHHHHHHHHHhhcccccc-----ccCChHHHHHHHHH
Q 011777           76 YQKPLNIVEGKMQYLFDENG--RRYLDAFAGIVTVSCGH-CHPDVLNAIFEQSKLLQHATT-----IYLHHAIADFAEAL  147 (477)
Q Consensus        76 ~~~p~~~~~g~G~~~~d~dG--~~ylD~~~g~~~~~lGh-~~p~v~~Av~~~l~~~~~~~~-----~~~~~~~~~l~~~L  147 (477)
                      ++..-++++.+|..+. ++|  +.+|.|+++.+   ||. +||+|++|-.++++.+.....     .+.......|..+|
T Consensus        46 wk~erVi~s~q~p~i~-v~G~~k~ilnFcaNnY---LGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~ki  121 (417)
T KOG1359|consen   46 WKRERVITSRQGPTIQ-VKGSDKKILNFCANNY---LGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKI  121 (417)
T ss_pred             ceeeeEEeecccceEE-Eeccccceeeeccccc---ccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHH
Confidence            3445678888888774 555  68899998765   776 599999999999988543221     25567889999999


Q ss_pred             HhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCC
Q 011777          148 ASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHG  227 (477)
Q Consensus       148 a~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (477)
                      +++...  +..++++|+-+||..++....  ++++.|.+ +.--|......+.+..                    .|+.
T Consensus       122 Aqfh~r--ED~ilypscfdANag~feail--~pedAvfS-DeLNhASIIdGirLck--------------------ry~h  176 (417)
T KOG1359|consen  122 AQFHGR--EDTILYPSCFDANAGAFEAIL--TPEDAVFS-DELNHASIIDGIRLCK--------------------RYRH  176 (417)
T ss_pred             HHHhCC--CceEEeccccccchHHHHHhc--Chhhhhhc-cccccchhhhhhHHHh--------------------hhcc
Confidence            999744  668899999999999887553  34444433 2233443333222211                    0110


Q ss_pred             CCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-Cc-cCCCCCCc
Q 011777          228 SFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GF-GRTGSHYW  305 (477)
Q Consensus       228 ~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gf-gr~G~~~~  305 (477)
                       .  |    .-+++..+....+.+.+.|..+.+.++.|.+.|    |++|.+|++|||.++++||.+. || |.+| . .
T Consensus       177 -~--d----v~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaP----l~ei~~La~kYgaLlfiDecHaTgf~G~tG-r-G  243 (417)
T KOG1359|consen  177 -V--D----VFDLEHCLISACKMRLKLVVTDGVFSMDGDIAP----LEEISQLAKKYGALLFIDECHATGFFGETG-R-G  243 (417)
T ss_pred             -c--h----hHHHHHHHHHhhhheEEEEEecceeccCCCccc----HHHHHHHHHhcCcEEEEeecccceeecCCC-C-C
Confidence             0  0    234444443223457889999999999999999    9999999999999999999975 33 5565 2 1


Q ss_pred             cccccCC--Cccee--eecccccC--ccceEEEEeCHHHHHhhcccccccCCCC--cHHHHHHHHHHHHhh-chhhHHHH
Q 011777          306 GFETQGV--IPDIV--TMAKGIGN--GLPLGAVVTTPEIANVMAQKIQFNTFGG--NPVCSAGGLAVLRVI-DKERRQAH  376 (477)
Q Consensus       306 ~~~~~gv--~pDiv--t~sK~lg~--G~pig~v~~~~~~~~~~~~~~~~~t~~~--~~~~~aaa~a~l~~l-~~~~~~~~  376 (477)
                      --+.+++  .+|++  |+||++||  |   ||+.+++.+++.+++.....-|+.  +|.....+.++++.+ .......+
T Consensus       244 t~E~~~vm~~vdiinsTLgKAlGga~G---Gyttgp~~li~llrqr~RpylFSnslppavV~~a~ka~dllm~s~~~i~~  320 (417)
T KOG1359|consen  244 TAEEFGVMGDVDIINSTLGKALGGASG---GYTTGPKPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMVSSKEIQS  320 (417)
T ss_pred             hHHHhCCCCcceehhhhhhhhhcCCCC---CCccCChhHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHhhHHHHHH
Confidence            2356665  46666  79999995  6   899999999999987765555543  343344455666654 34567788


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceeeeccc-eeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeecc-----CCCCCEE
Q 011777          377 CADVGSHLLGRLRTLQERHDIIGDVRGRG-LMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG-----GLHGNVF  450 (477)
Q Consensus       377 ~~~~~~~l~~~L~~l~~~~~~~~~v~g~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-----~~~~~~i  450 (477)
                      ...+.+++++.+...    +  .++.|.. .+..+.+        .+...+..+.+.|+++|+++..-     +.....|
T Consensus       321 ~~a~~qrfr~~me~a----G--ftIsg~~hPI~pv~l--------Gda~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkari  386 (417)
T KOG1359|consen  321 RQANTQRFREFMEAA----G--FTISGASHPICPVML--------GDARLASKMADELLKRGIYVIGFSYPVVPKGKARI  386 (417)
T ss_pred             HHHHHHHHHHHHHhc----C--ceecCCCCCccceec--------ccHHHHHHHHHHHHhcCceEEeecCCcCCCCceEE
Confidence            888888888876543    1  1122211 1222333        24456788999999999988422     1224579


Q ss_pred             EEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          451 RIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       451 Ri~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      |+..+..||+||||++++++.++.+
T Consensus       387 RVqiSAaHt~edid~~i~Af~~vgr  411 (417)
T KOG1359|consen  387 RVQISAAHTEEDIDRLIEAFSEVGR  411 (417)
T ss_pred             EEEEehhcCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988764

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=99.91  E-value=8.1e-22  Score=185.83  Aligned_cols=344  Identities=16%  Similarity=0.133  Sum_probs=219.3

Q ss_pred             CEEEeecCCcccccCC--CCCHHHHHHHHHHHhhcc---ccccccCChHHHHHHHHHHhhCCCC--CCEEEEeCChHHHH
Q 011777           96 RRYLDAFAGIVTVSCG--HCHPDVLNAIFEQSKLLQ---HATTIYLHHAIADFAEALASKMPGN--LKVVYFVNSGTEAN  168 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lG--h~~p~v~~Av~~~l~~~~---~~~~~~~~~~~~~l~~~La~~~~~~--~~~v~~~~sGseA~  168 (477)
                      +.+|-+..|-+++ +|  -..++..+||.+.+..+.   |..+.+....+++.++.|.+-++..  .+.|++|+|.++|+
T Consensus        61 k~iipl~~GDPsv-~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAI  139 (447)
T KOG0259|consen   61 KPILPLGHGDPSV-YPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAI  139 (447)
T ss_pred             ceeccCCCCCCCc-cccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHH
Confidence            3556555554432 22  146789999999988642   2233344566777777777666543  46899999999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCC-CCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYP-IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG  247 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~  247 (477)
                      |.++.+..  .++..|+...++|.-+..-+....- ...++. .|..+|..             |    ++.+|.+++  
T Consensus       140 e~~i~~LA--~p~aNILlPrPGfp~Y~~~a~~~~l-EVR~ydlLPe~~weI-------------D----L~~veal~D--  197 (447)
T KOG0259|consen  140 ELAISSLA--NPGANILLPRPGFPLYDTRAIYSGL-EVRYYDLLPEKDWEI-------------D----LDGVEALAD--  197 (447)
T ss_pred             HHHHHHhc--CCCCceecCCCCCchHHHhhhhcCc-eeEeecccCccccee-------------c----hHHHHHhhc--
Confidence            99998543  3677899999999755433332221 111111 22223322             1    577888876  


Q ss_pred             CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc-CCCccee--eeccccc
Q 011777          248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ-GVIPDIV--TMAKGIG  324 (477)
Q Consensus       248 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~-gv~pDiv--t~sK~lg  324 (477)
                       .+.+|.||++|.|+.|+  +.+.+-|++|.++|+|+|+++|.||||..+-+.+..+..+..+ .+.|-+.  .+||.+-
T Consensus       198 -ENT~AivviNP~NPcGn--Vys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~  274 (447)
T KOG0259|consen  198 -ENTVAIVVINPNNPCGN--VYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWI  274 (447)
T ss_pred             -cCeeEEEEeCCCCCCcc--cccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccc
Confidence             45778888888877764  5789999999999999999999999999887777445555443 4456444  3679887


Q ss_pred             -CccceEEEEeCHH--------HHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHH----HHHHHHHHHHHHHHHH
Q 011777          325 -NGLPLGAVVTTPE--------IANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQA----HCADVGSHLLGRLRTL  391 (477)
Q Consensus       325 -~G~pig~v~~~~~--------~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~----~~~~~~~~l~~~L~~l  391 (477)
                       .|||+||++....        +.+.+.... .-+-+.+.+-|+|.-..|+.-. +++.+    -++.+.+...++|++ 
T Consensus       275 VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~-~~~~~p~TiiQ~AlP~IL~kTp-~efF~k~~~~lk~na~l~y~~Lk~-  351 (447)
T KOG0259|consen  275 VPGWRLGWIALHDPRGVFRDTKVVQGIKNFL-DIIPGPATIIQGALPDILEKTP-EEFFDKKLSFLKSNADLCYSRLKD-  351 (447)
T ss_pred             cCCceeeeEEEecccccccchHHHHHHHHHH-hccCCccHhHHHHhHHHHHhCh-HHHHHHHHHHHHhhHHHHHHHHhc-
Confidence             5999999987531        222222211 1233445666666555554322 33333    333344444444444 


Q ss_pred             HHhCCCce-eeeccceeEE-EEEeeCCCCCCcc-HHHHHHHHHHHHHcCceeeccCCC--CCEEEEeCCCCCcHHHHHHH
Q 011777          392 QERHDIIG-DVRGRGLMVG-MELVTDRKEKTPA-KAETAVLFEKLRELGVLVGKGGLH--GNVFRIKPPMCFTKDDADFL  466 (477)
Q Consensus       392 ~~~~~~~~-~v~g~g~~~~-i~~~~~~~~~~~~-~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~  466 (477)
                         .|.+. .+++.|.|+. +.+...   ..++ ..+.+...+..+|+.+++-||..+  .|++|++  +....+.++++
T Consensus       352 ---IP~l~cp~kPeg~mylmv~l~~s---~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~--i~~~~~~leea  423 (447)
T KOG0259|consen  352 ---IPCLTCPVKPEGCMYLMVKLNLS---LFPDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIV--ITVEEEMLEEA  423 (447)
T ss_pred             ---CCCcccCcCCCcceEEEeccchh---hhccccccHHHHHHHhhhcceEEeccccccCCCeEEEE--EccChHHHHHH
Confidence               46665 6788887764 333211   1111 112344455667889999998654  4899995  77889999999


Q ss_pred             HHHHHHHHhh
Q 011777          467 VDALDYSMSK  476 (477)
Q Consensus       467 l~~l~~~l~~  476 (477)
                      ++||++...+
T Consensus       424 ~~Rik~Fc~R  433 (447)
T KOG0259|consen  424 FSRIKEFCDR  433 (447)
T ss_pred             HHHHHHHHHh
Confidence            9999987643

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.91  E-value=6.9e-22  Score=204.78  Aligned_cols=316  Identities=14%  Similarity=0.066  Sum_probs=189.3

Q ss_pred             ChHHHHHHHHHHhhCC----CCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCC
Q 011777          137 HHAIADFAEALASKMP----GNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP  212 (477)
Q Consensus       137 ~~~~~~l~~~La~~~~----~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  212 (477)
                      .+.+..+++.+.+..+    .+.++|++|+|+++|++.+++...  .+++.|++.+++|.+.........          
T Consensus        97 ~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~--~pGD~Vlv~~P~Y~~~~~~~~~~~----------  164 (496)
T PLN02376         97 KKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLA--DPGDVFLIPSPYYAAFDRDLRWRT----------  164 (496)
T ss_pred             HHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhC--CCCCEEEECCCCccchHHHHHhhC----------
Confidence            3445566666655432    456899999999999999988653  366889999999998754332111          


Q ss_pred             CCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEE
Q 011777          213 QGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA  290 (477)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  290 (477)
                        |+..+++|......++.+    .+++++.++..  ...++++|++...+|++| .+++++.+++|.++|++||++||+
T Consensus       165 --G~~vv~v~~~~~~~~~~~----~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG-~~~s~e~l~~L~~~a~~~~i~lI~  237 (496)
T PLN02376        165 --GVEIIPVPCSSSDNFKLT----VDAADWAYKKAQESNKKVKGLILTNPSNPLG-TMLDKDTLTNLVRFVTRKNIHLVV  237 (496)
T ss_pred             --CCEEEEEeCCCCccCcCC----HHHHHHHHHHHHhcCCCeeEEEEcCCCCCCC-ccCCHHHHHHHHHHHHHcCCEEEE
Confidence              333333332211222222    35555443211  123566555544456667 566899999999999999999999


Q ss_pred             cCcccCccCCCCCCcccc-c---cC---CCcc----eeeeccccc-CccceEEEEeC-HHHHHhhcccccccCCCCcHHH
Q 011777          291 DEVQTGFGRTGSHYWGFE-T---QG---VIPD----IVTMAKGIG-NGLPLGAVVTT-PEIANVMAQKIQFNTFGGNPVC  357 (477)
Q Consensus       291 DEv~~gfgr~G~~~~~~~-~---~g---v~pD----ivt~sK~lg-~G~pig~v~~~-~~~~~~~~~~~~~~t~~~~~~~  357 (477)
                      ||+|..+.+.+..+-.+. .   .+   ..++    +-+|||.+| .|+|+||++++ +.+.+.+....  ..+..+.+.
T Consensus       238 DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~--~~~~vs~~~  315 (496)
T PLN02376        238 DEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMS--SFGLVSSQT  315 (496)
T ss_pred             EcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHHh--hcCCCCHHH
Confidence            999998765552222211 1   01   1233    237999998 79999999995 55666544322  122356778


Q ss_pred             HHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHH-
Q 011777          358 SAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRE-  435 (477)
Q Consensus       358 ~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-  435 (477)
                      +.++.+.|+.-+- ++++++.++..+..++.+.+...++++.......|+++|+++...... ........++++.+.+ 
T Consensus       316 Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~gi~~~~~~aG~flwi~l~~~~~~-~~~~~~e~~l~~~ll~~  394 (496)
T PLN02376        316 QLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKADIACLTSNAGLFAWMDLRHLLRD-RNSFESEIELWHIIIDK  394 (496)
T ss_pred             HHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCceEEEEEEchhhhcc-CCchhHHHHHHHHHHHc
Confidence            8777777642111 222222233223333333333333332222233468999988431110 0011123457777766 


Q ss_pred             cCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          436 LGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       436 ~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      .||.+.||..+    .+++||++.. .+++++++++++|.+++.
T Consensus       395 ~gV~v~pGs~F~~~~~g~~Ri~fa~-~~~~~l~~al~rl~~~l~  437 (496)
T PLN02376        395 VKLNVSPGSSFRCTEPGWFRICFAN-MDDDTLHVALGRIQDFVS  437 (496)
T ss_pred             CCEEEeCccccCCCCCCEEEEEeeC-CCHHHHHHHHHHHHHHHH
Confidence            59999998544    3699997543 468999999999999875

>PLN02672 methionine S-methyltransferase

Probab=99.91  E-value=7.1e-22  Score=215.12  Aligned_cols=356  Identities=11%  Similarity=0.045  Sum_probs=217.5

Q ss_pred             EEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCC---EEEEeCChH
Q 011777           89 YLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLK---VVYFVNSGT  165 (477)
Q Consensus        89 ~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~---~v~~~~sGs  165 (477)
                      ++.+.+|..+|++..|..  .++ .+|.|.+++.+.+.+..+  ..+..+.+.++++++++..+.+.+   +|++++|++
T Consensus       690 ~~~~~~g~~vI~LsinE~--d~p-pPp~V~eAi~eal~~~~~--s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~  764 (1082)
T PLN02672        690 SVSGSQESSLIHMDVDES--FLP-VPSAVKASIFESFVRQNI--SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSL  764 (1082)
T ss_pred             CCcccCCCCEEEEeCCCC--CCC-CCHHHHHHHHHHHhhcCC--CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHH
Confidence            455667889999887764  455 688999999887765332  112345578999999998765443   799999999


Q ss_pred             HHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHh
Q 011777          166 EANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHID  245 (477)
Q Consensus       166 eA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~  245 (477)
                      +++..+++....  +++.|++..++|..+...+...+             ...+.+|......|..|    .++++++++
T Consensus       765 elL~lll~aLl~--pGD~VLVp~PtY~~Y~~~a~~~G-------------a~vv~Vpl~~e~gf~lD----~d~Le~al~  825 (1082)
T PLN02672        765 ALFNKLVLCCVQ--EGGTLCFPAGSNGTYVSAAKFLK-------------ANFRRIPTKSSDGFKLT----AKTLASTLE  825 (1082)
T ss_pred             HHHHHHHHHHcC--CCCEEEEeCCChHHHHHHHHHcC-------------CEEEEEecccccCCCCC----HHHHHHHhc
Confidence            999888775433  56889999999988766544332             22222222111123222    367777775


Q ss_pred             ccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCC--cccc----cc-CCCc--ce
Q 011777          246 FGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHY--WGFE----TQ-GVIP--DI  316 (477)
Q Consensus       246 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~--~~~~----~~-gv~p--Di  316 (477)
                      .  ....++++++|.+|++| .+++++.+++|.++|++||++||+||+|.++-+.+...  +.+.    .+ ...+  .+
T Consensus       826 ~--~~~~~I~L~nPnhNPTG-~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nV  902 (1082)
T PLN02672        826 T--VKKPWVYISGPTINPTG-LLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAV  902 (1082)
T ss_pred             c--CCCCEEEEECcCCCCcC-ccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceE
Confidence            2  12346788888766777 56799999999999999999999999999887665211  1111    11 1111  12


Q ss_pred             ---eeeccccc-CccceEEEEeCH-HHHHhhccccccc-CCCCcHHHHHHHHHHHHhhchhhHHHHHHHH---HHHHHHH
Q 011777          317 ---VTMAKGIG-NGLPLGAVVTTP-EIANVMAQKIQFN-TFGGNPVCSAGGLAVLRVIDKERRQAHCADV---GSHLLGR  387 (477)
Q Consensus       317 ---vt~sK~lg-~G~pig~v~~~~-~~~~~~~~~~~~~-t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~---~~~l~~~  387 (477)
                         -+|||.++ +|+|+||+++++ ++++.+....... .+..+..+++++++++.. +..++.+++.+.   .+.-++.
T Consensus       903 IvL~SfSKkf~lpGLRIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~-~~~~~~~~l~e~r~~Lk~rRd~  981 (1082)
T PLN02672        903 ALLGGLSTELLSGGHEFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQ-KSSDLLDGVAEQKKILKSRAER  981 (1082)
T ss_pred             EEEeCcHHhhccHHHHheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHHH
Confidence               26899999 499999999964 5888776532111 122233444444433320 112222222222   2222223


Q ss_pred             HHHHHHhCCCceeeeccc-eeEEEEEeeCC--CC--CCcc-----HHHHHHHHHHHHHc-CceeeccCCC--CCEEEEeC
Q 011777          388 LRTLQERHDIIGDVRGRG-LMVGMELVTDR--KE--KTPA-----KAETAVLFEKLREL-GVLVGKGGLH--GNVFRIKP  454 (477)
Q Consensus       388 L~~l~~~~~~~~~v~g~g-~~~~i~~~~~~--~~--~~~~-----~~~~~~~~~~l~~~-Gv~v~~~~~~--~~~iRi~p  454 (477)
                      +.+...+++. ...++.| .++|+.+..-.  ..  ..+.     .....++.+.|+++ ||.+.||..+  .+++||+.
T Consensus       982 L~e~L~~~Gi-~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIsf 1060 (1082)
T PLN02672        982 LKETLEACGW-DVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFSF 1060 (1082)
T ss_pred             HHHHHHHCCC-eEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEEe
Confidence            3333333443 3344554 45565542100  00  0000     11245788888765 9999998443  47899964


Q ss_pred             CCCCcHHHHHHHHHHHHHHHh
Q 011777          455 PMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       455 ~~~~t~e~i~~~l~~l~~~l~  475 (477)
                        ..+++++++++++|.+...
T Consensus      1061 --a~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672       1061 --ALEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred             --cCCHHHHHHHHHHHHHHHH
Confidence              4688999999999998653

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.91  E-value=2.6e-22  Score=204.24  Aligned_cols=341  Identities=13%  Similarity=0.077  Sum_probs=201.5

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc--ccccc-CChHHHHHHHHHHhhC---CCCCCEEEEeCChHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH--ATTIY-LHHAIADFAEALASKM---PGNLKVVYFVNSGTEAN  168 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~--~~~~~-~~~~~~~l~~~La~~~---~~~~~~v~~~~sGseA~  168 (477)
                      |..++|+..|..  .++ ..|.+.+++.+.+.+...  ....| +.....+|.+.+++.+   ..+.++|++|+|+++++
T Consensus        32 ~~~~i~l~~~~~--~~~-~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al  108 (402)
T TIGR03542        32 SADIIRLGIGDT--TQP-LPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCDV  108 (402)
T ss_pred             CCCeEEcCCCCC--CCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHH
Confidence            567788877654  233 368899999887765321  11123 2233455666666543   34568999999999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCe-eeecCCCCcCCCCCCCHHHHHHHHHHHHhcc
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEI-HHVVNPDPYHGSFGSDAARYAQDLQDHIDFG  247 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~  247 (477)
                      ...+.+   ..+++.|++.+++|.++.......+.... .  .....+ ..+++|......+.       .++++     
T Consensus       109 ~~l~~l---~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~-~--~~~~~~~~~~~v~~~~~~~~~-------~~~~~-----  170 (402)
T TIGR03542       109 FRLQSL---FGSDNTVAVQDPVYPAYVDSNVMAGRAGV-L--DDDGRYSKITYLPCTKENNFI-------PDLPE-----  170 (402)
T ss_pred             HHHHHh---cCCCCEEEEeCCCCcchHHHHHHcCCccc-c--ccccccceEEEeecchhhCCC-------CCccc-----
Confidence            875432   23567899999999988655444332110 0  000111 22222211111111       11111     


Q ss_pred             CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-ccc---CCCcceeeecccc
Q 011777          248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQ---GVIPDIVTMAKGI  323 (477)
Q Consensus       248 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~---gv~pDivt~sK~l  323 (477)
                       ..++++|++...+|++| .+++.+.+++|.++|++||++||+||+|..|...+.....+ ...   +....+-+|||.+
T Consensus       171 -~~~~~~i~l~nP~NPTG-~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~  248 (402)
T TIGR03542       171 -EPKIDIIYLCSPNNPTG-TVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTA  248 (402)
T ss_pred             -cCCceEEEEeCCCCCCC-ccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCcccc
Confidence             12445555545566677 56788999999999999999999999999885443111111 111   1223344799999


Q ss_pred             c-CccceEEEEeCHHHH--------HhhcccccccCC-CCcHHHHHHHHHHHHhhchh---hHHHHHHHHHHHHHHHHHH
Q 011777          324 G-NGLPLGAVVTTPEIA--------NVMAQKIQFNTF-GGNPVCSAGGLAVLRVIDKE---RRQAHCADVGSHLLGRLRT  390 (477)
Q Consensus       324 g-~G~pig~v~~~~~~~--------~~~~~~~~~~t~-~~~~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~  390 (477)
                      | .|+|+||++++++++        ..+.. ....++ +.+.+++.++.+.++.-..+   +..+.++++.+.+.+.|++
T Consensus       249 g~pGlRiG~~i~~~~l~~~~~~~~~~~~~~-~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~  327 (402)
T TIGR03542       249 GFTGVRLGWTVVPKELTYADGHSVIQDWER-RQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEA  327 (402)
T ss_pred             CCCCcceEEEEecHHHhhcchhhHHHHHHH-HhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence            8 799999999998876        22211 111223 46778888877776521111   1223333444444444433


Q ss_pred             HHHhCCCceeeec-cceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCCcHHHHH
Q 011777          391 LQERHDIIGDVRG-RGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCFTKDDAD  464 (477)
Q Consensus       391 l~~~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~  464 (477)
                          ++ +....+ .|.++|+++...        ....++.+.|+ +.||.+.++..+    .+++||+  +..++++++
T Consensus       328 ----~~-~~~~~~~~~~f~~v~l~~~--------~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis--~~~~~~~l~  392 (402)
T TIGR03542       328 ----AG-FKVYGGEHAPYLWVKTPEG--------ISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFS--AFGKRENIV  392 (402)
T ss_pred             ----cC-ceecCCCceeEEEEECCCC--------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEE--ecCCHHHHH
Confidence                33 222233 466888887321        11345777766 579999987432    3689996  445899999


Q ss_pred             HHHHHHHHHH
Q 011777          465 FLVDALDYSM  474 (477)
Q Consensus       465 ~~l~~l~~~l  474 (477)
                      +++++|.+++
T Consensus       393 ~~l~~l~~~~  402 (402)
T TIGR03542       393 EACERIKEAL  402 (402)
T ss_pred             HHHHHHHhhC
Confidence            9999998763

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.91  E-value=6.3e-22  Score=200.07  Aligned_cols=328  Identities=16%  Similarity=0.161  Sum_probs=204.4

Q ss_pred             EEeecCCcccccCCCCCHHHHHHHHHHHhhcc-cccccc-----CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHH
Q 011777           98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-HATTIY-----LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELA  171 (477)
Q Consensus        98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-~~~~~~-----~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~A  171 (477)
                      |||..+..      ..++.|.+++.+.+.... +....+     ......+++++++++++.+.++|+|++||+++++.+
T Consensus         2 yld~aa~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~a   75 (379)
T TIGR03402         2 YLDNNATT------RVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTA   75 (379)
T ss_pred             cCCCcCCC------CCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHH
Confidence            77866544      368899999998876421 111111     123466888999999987778899999999999999


Q ss_pred             HHHHHhc-cCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCC
Q 011777          172 MLMARLS-TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG  250 (477)
Q Consensus       172 l~~ar~~-~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~  250 (477)
                      ++.+... .+++.|++....|++..........          .|+....+|.......+      .++++++++    +
T Consensus        76 l~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~~----------~G~~v~~v~~~~~g~~~------~~~l~~~i~----~  135 (379)
T TIGR03402        76 IKSALAAQPEKRHIITTAVEHPAVLSLCQHLEK----------QGYKVTYLPVDEEGRLD------LEELRAAIT----D  135 (379)
T ss_pred             HHHHHHhcCCCCeEEEcccccHHHHHHHHHHHH----------cCCEEEEEccCCCCcCC------HHHHHHhcC----C
Confidence            9876432 3455666666666543221111100          12222222211111111      477888775    3


Q ss_pred             CeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--ccccCccc
Q 011777          251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLP  328 (477)
Q Consensus       251 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~p  328 (477)
                      +++++++..+++++|.+.+    +++|.++|++||+++|+|++|+ +|.     ..++.....+|++++|  | +.|...
T Consensus       136 ~~~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~~~~-~g~-----~~~~~~~~~~D~~~~s~~K-~~gp~G  204 (379)
T TIGR03402       136 DTALVSVMWANNETGTIFP----IEEIGEIAKERGALFHTDAVQA-VGK-----IPIDLKEMNIDMLSLSGHK-LHGPKG  204 (379)
T ss_pred             CcEEEEEEcccCCeeeccc----HHHHHHHHHHcCCEEEEECccc-ccc-----cccCcccCCCCEEEEcHHH-cCCCCc
Confidence            5678888888888998887    8899999999999999999997 432     1234444567999888  9 655556


Q ss_pred             eEEEEeCHHHHHhhcccccc-------cCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCce
Q 011777          329 LGAVVTTPEIANVMAQKIQF-------NTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIG  399 (477)
Q Consensus       329 ig~v~~~~~~~~~~~~~~~~-------~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~  399 (477)
                      +|+++.+++..  +.+...+       -....|..+..+..++++.+.+  ++..++.+++.++++++|.+   ..+.+.
T Consensus       205 ~g~l~v~~~~~--~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~---~~~~~~  279 (379)
T TIGR03402       205 VGALYIRKGTR--FRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLA---RIPDAR  279 (379)
T ss_pred             eEEEEECCCCC--CCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh---hCCCEE
Confidence            88988887642  2221111       1123455666666677776543  23345555555566655543   122211


Q ss_pred             ee---ecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC---------------------CCCEEEEeC
Q 011777          400 DV---RGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL---------------------HGNVFRIKP  454 (477)
Q Consensus       400 ~v---~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------~~~~iRi~p  454 (477)
                      -.   ... ...+.+.+..      +   ...++...|.++||.+..+..                     ..+.+|+++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~  350 (379)
T TIGR03402       280 LNGDPTKRLPNTVNISFEY------I---EGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSL  350 (379)
T ss_pred             EeCCCccCCCCEEEEEecC------C---CHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEc
Confidence            11   001 1123333311      1   134677888889999986521                     136899999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhh
Q 011777          455 PMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       455 ~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +..+|++|||++++.|++++++
T Consensus       351 ~~~~t~~di~~~~~~l~~~~~~  372 (379)
T TIGR03402       351 SRYNTEEDIDYVLEVLPPIIAR  372 (379)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988754

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.91  E-value=1e-21  Score=199.29  Aligned_cols=334  Identities=14%  Similarity=0.097  Sum_probs=206.9

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccccc-----CChHHHHHHHHHHhhC--CCCCCEEEEeCChHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY-----LHHAIADFAEALASKM--PGNLKVVYFVNSGTEAN  168 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~-----~~~~~~~l~~~La~~~--~~~~~~v~~~~sGseA~  168 (477)
                      ...+||..|.+.  + ..++.+.+++.+.++........|     ..+.+..+++.+....  +.+.++|++++|+++++
T Consensus        33 ~~~~~l~~g~p~--~-~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al  109 (394)
T PRK06836         33 DNVFDFSLGNPS--V-PPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGAL  109 (394)
T ss_pred             CCeEEecCcCCC--C-CCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHH
Confidence            457888776542  2 256788888887665321111122     2233444555554432  23567899999999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      ..+++...  .+++.|++.+++|.++.......             |+....++.... .++.|    .++++++++   
T Consensus       110 ~~~~~~l~--~~gd~Vli~~p~~~~~~~~~~~~-------------g~~v~~v~~~~~-~~~~d----~~~l~~~~~---  166 (394)
T PRK06836        110 NVALKAIL--NPGDEVIVFAPYFVEYRFYVDNH-------------GGKLVVVPTDTD-TFQPD----LDALEAAIT---  166 (394)
T ss_pred             HHHHHHhc--CCCCEEEEcCCCCccHHHHHHHc-------------CCEEEEEecCCc-cCcCC----HHHHHhhcC---
Confidence            99887653  35678999999888764432221             222222221111 01111    477777775   


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHH------hCcEEEEcCcccCccCCCCCCcc-ccccCCCcceeeecc
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK------AGGVCIADEVQTGFGRTGSHYWG-FETQGVIPDIVTMAK  321 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~------~gillI~DEv~~gfgr~G~~~~~-~~~~gv~pDivt~sK  321 (477)
                       +++++|++...++++| ...+.+.+++|.++|++      ||+++|+||+|.+|...+..... ....+...-+-+|||
T Consensus       167 -~~~~~v~~~~p~NPtG-~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK  244 (394)
T PRK06836        167 -PKTKAVIINSPNNPTG-VVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSK  244 (394)
T ss_pred             -cCceEEEEeCCCCCCC-cCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchh
Confidence             3566677666677777 45578889999999999      89999999999988554411111 112222222336899


Q ss_pred             ccc-CccceEEEEeCHHHHHh---hcc---ccc-ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 011777          322 GIG-NGLPLGAVVTTPEIANV---MAQ---KIQ-FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQE  393 (477)
Q Consensus       322 ~lg-~G~pig~v~~~~~~~~~---~~~---~~~-~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~  393 (477)
                      .++ .|+|+||+++++++.+.   ...   ... .+.++.+++.+.++...++.   ....+.++++.+.+.+.|++   
T Consensus       245 ~~~~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~r~~l~~~L~~---  318 (394)
T PRK06836        245 SLSLPGERIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDA---TVDVSIYKRNRDLLYDGLTE---  318 (394)
T ss_pred             hccCcceeeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHh---
Confidence            999 79999999999876432   111   111 12245667777777666642   22234455555555555543   


Q ss_pred             hCCCceeeec-cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC--CCEEEEeCCCCCcHHHHHHHHHHH
Q 011777          394 RHDIIGDVRG-RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH--GNVFRIKPPMCFTKDDADFLVDAL  470 (477)
Q Consensus       394 ~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l~~l  470 (477)
                       ++. ....+ .|+++|+.+..      .   ...++.+.|.++||.+.++..+  .+++||+..  .+++++++++++|
T Consensus       319 -~g~-~~~~~~gg~~~~~~~~~------~---~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~--~~~~~~~~~i~~l  385 (394)
T PRK06836        319 -LGF-ECVKPQGAFYLFPKSPE------E---DDVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYC--VDTETIERSLPAF  385 (394)
T ss_pred             -CCC-EeecCCceEEEEEeCCC------C---CHHHHHHHHHhCCEEEECchhcCCCCeEEEEec--CCHHHHHHHHHHH
Confidence             342 22333 35666765521      1   2345678889999999998543  478999765  6899999999999


Q ss_pred             HHHHhh
Q 011777          471 DYSMSK  476 (477)
Q Consensus       471 ~~~l~~  476 (477)
                      .+++++
T Consensus       386 ~~~l~~  391 (394)
T PRK06836        386 EKLAKE  391 (394)
T ss_pred             HHHHHH
Confidence            998864

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=99.91  E-value=1.5e-22  Score=194.17  Aligned_cols=336  Identities=15%  Similarity=0.079  Sum_probs=219.4

Q ss_pred             CCHHHHHHHHHHHhhc---cccccccCChHHHHHHHHHHhhCCC---CCCEEEEeCChHHHHHHHHHHHHhccCCceEEE
Q 011777          113 CHPDVLNAIFEQSKLL---QHATTIYLHHAIADFAEALASKMPG---NLKVVYFVNSGTEANELAMLMARLSTGNLGMIA  186 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~---~~~~~~~~~~~~~~l~~~La~~~~~---~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~  186 (477)
                      .+.-|.+++.+.++..   .++...+..+.+..|++++.++++.   ..++|++|+|+.+|+..++.....  .++.||+
T Consensus        45 ~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~--~GDeVii  122 (420)
T KOG0257|consen   45 PPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLN--PGDEVIV  122 (420)
T ss_pred             CcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcC--CCCEEEE
Confidence            3567788888877653   2223334556688888888886542   346799999999999988876543  7899999


Q ss_pred             EccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCe
Q 011777          187 LRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGA  266 (477)
Q Consensus       187 ~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~  266 (477)
                      +++.|..+.......++.+.+....+..|-  +     +...|..|    .+++|..+.    +++++|+++..+|++| 
T Consensus       123 ~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~--~-----~s~~~~~D----~~~le~~~t----~kTk~Ii~ntPhNPtG-  186 (420)
T KOG0257|consen  123 FEPFFDCYIPQVVMAGGTPVFVPLKPKEGN--V-----SSSDWTLD----PEELESKIT----EKTKAIILNTPHNPTG-  186 (420)
T ss_pred             ecCcchhhhhHHhhcCCcceeecccccccc--c-----cCccccCC----hHHHHhhcc----CCccEEEEeCCCCCcC-
Confidence            999999887776666554433222111111  0     11122222    478888887    4667777776667777 


Q ss_pred             eeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccc-ccC---CCcceeeecccccC-ccceEEEEeCHHHHHh
Q 011777          267 VELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE-TQG---VIPDIVTMAKGIGN-GLPLGAVVTTPEIANV  341 (477)
Q Consensus       267 ~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~-~~g---v~pDivt~sK~lg~-G~pig~v~~~~~~~~~  341 (477)
                      -+.+++.|++|.+||++||+++|+||||.-+-+.|.++..+. ..|   ....+-++||.++. |||+||+++++.+...
T Consensus       187 kvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp~~L~~~  266 (420)
T KOG0257|consen  187 KVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGPKHLYSA  266 (420)
T ss_pred             cccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeechHHhhhh
Confidence            456899999999999999999999999998887774333221 133   34445578999995 9999999998888887


Q ss_pred             hcccccccCCCCcHHHHHHHHHHHHhhch----------hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEE
Q 011777          342 MAQKIQFNTFGGNPVCSAGGLAVLRVIDK----------ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGME  411 (477)
Q Consensus       342 ~~~~~~~~t~~~~~~~~aaa~a~l~~l~~----------~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~  411 (477)
                      +........|..+...+.|..+++..-..          .++...++++++.+.+.|.++    +.......-+.+++.+
T Consensus       267 ~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l----g~~v~~p~gayyl~ad  342 (420)
T KOG0257|consen  267 LFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEEL----GLKVTGPEGAYYLWAD  342 (420)
T ss_pred             HHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhc----CCccccCCCceEEEEe
Confidence            77666666677676677776666653220          124556666666676666665    3222223335566888


Q ss_pred             EeeCCCCCCccH-----HHHHHHHHHHHHcCceeeccCCC---------CCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777          412 LVTDRKEKTPAK-----AETAVLFEKLRELGVLVGKGGLH---------GNVFRIKPPMCFTKDDADFLVDALDY  472 (477)
Q Consensus       412 ~~~~~~~~~~~~-----~~~~~~~~~l~~~Gv~v~~~~~~---------~~~iRi~p~~~~t~e~i~~~l~~l~~  472 (477)
                      +........+..     .........+.+.|+.+.|...+         ++.+|+  .++-+++.++.++++|..
T Consensus       343 fs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~--~~~k~~~~L~~a~e~l~~  415 (420)
T KOG0257|consen  343 FSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRF--CFCKADETLRKAIERLKK  415 (420)
T ss_pred             ccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHH--HHHhhHHHHHHHHHHHhh
Confidence            762211100100     11122344566778888776433         235666  466778888888888873

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.90  E-value=2.8e-21  Score=199.55  Aligned_cols=315  Identities=15%  Similarity=0.089  Sum_probs=187.0

Q ss_pred             hHHHHHHHHHHhhCC----CCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCC
Q 011777          138 HAIADFAEALASKMP----GNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ  213 (477)
Q Consensus       138 ~~~~~l~~~La~~~~----~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~  213 (477)
                      +.+..+++.+.+..+    .+.++|++|+|++++++.++....  .+++.|++.+++|.++........           
T Consensus        90 ~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~--~pGd~Vlv~~P~Y~~~~~~~~~~~-----------  156 (468)
T PLN02450         90 AFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLA--EPGDAFLLPTPYYPGFDRDLKWRT-----------  156 (468)
T ss_pred             HHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhC--CCCCEEEECCCCCCchHHHHhhcC-----------
Confidence            445556666654322    356789999999999998887553  367889999999988744332111           


Q ss_pred             CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777          214 GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD  291 (477)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  291 (477)
                       |...+++|......+..+    .+++++.++..  ...+++++++...+|++| .+.+++.+++|.++|++||++||+|
T Consensus       157 -g~~~v~v~~~~~~~~~~~----~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG-~~~s~e~l~~ll~~a~~~~~~iI~D  230 (468)
T PLN02450        157 -GVEIVPIHCSSSNGFQIT----ESALEEAYQQAQKLNLKVKGVLITNPSNPLG-TTTTRTELNLLVDFITAKNIHLISD  230 (468)
T ss_pred             -CcEEEEEecCCccCCcCC----HHHHHHHHHHHHhcCCCeeEEEEecCCCCCC-cccCHHHHHHHHHHHHHCCcEEEEE
Confidence             223333332111222222    35666665421  122455444444455666 5678999999999999999999999


Q ss_pred             CcccCccCCCCCCccc-ccc-----------CCCcceeeeccccc-CccceEEEEeCHH-HHHhhcccccccCCCCcHHH
Q 011777          292 EVQTGFGRTGSHYWGF-ETQ-----------GVIPDIVTMAKGIG-NGLPLGAVVTTPE-IANVMAQKIQFNTFGGNPVC  357 (477)
Q Consensus       292 Ev~~gfgr~G~~~~~~-~~~-----------gv~pDivt~sK~lg-~G~pig~v~~~~~-~~~~~~~~~~~~t~~~~~~~  357 (477)
                      |+|.++-+.+..+... ...           +...-+-+|||.++ +|+|+||++++++ +.+.+.....  ....+.++
T Consensus       231 E~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~  308 (468)
T PLN02450        231 EIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSS--FGLVSSQT  308 (468)
T ss_pred             ccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHhh--cCCCCHHH
Confidence            9999875554222111 111           11112337999998 7999999999854 5555543321  12357788


Q ss_pred             HHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHH-H
Q 011777          358 SAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR-E  435 (477)
Q Consensus       358 ~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~  435 (477)
                      +.++.++|+.-.- +.+.+..++..+..++.+.+...++++.......|+++|+.+.....  ...-....++.+.++ +
T Consensus       309 Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~gi~~~~~~~g~flwi~l~~~~~--~~~~~~~~~l~~~ll~~  386 (468)
T PLN02450        309 QYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAAGIKCLKSNAGLFCWVDMRHLLK--SNTFEAEMELWKKIVYE  386 (468)
T ss_pred             HHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCceEEEEEEchHhcC--cCCchHHHHHHHHHHHh
Confidence            8888887753210 11222222222333333333333444322223346688888742111  011112234555555 5


Q ss_pred             cCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          436 LGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       436 ~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .||.+.||..+    .+++||+... .+++++++++++|.+++.+
T Consensus       387 ~gV~v~PG~~f~~~~~g~~Rl~f~~-~~~~~l~~~l~ri~~~l~~  430 (468)
T PLN02450        387 VKLNISPGSSCHCTEPGWFRVCFAN-MSEETLDLAMKRLKSFVES  430 (468)
T ss_pred             CCEEEeCccccCCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHHh
Confidence            79999998543    3689997543 4789999999999998764

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.90  E-value=7.8e-22  Score=201.85  Aligned_cols=347  Identities=12%  Similarity=0.026  Sum_probs=202.0

Q ss_pred             EEEeecCCcccccCCCCC--HHHHHHHHHHHhhcc-------ccccccCChHHHHHHHHHHhhC--CCCCCEEEEeCChH
Q 011777           97 RYLDAFAGIVTVSCGHCH--PDVLNAIFEQSKLLQ-------HATTIYLHHAIADFAEALASKM--PGNLKVVYFVNSGT  165 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~--p~v~~Av~~~l~~~~-------~~~~~~~~~~~~~l~~~La~~~--~~~~~~v~~~~sGs  165 (477)
                      ..+||..|...  + ...  +.+.+++.+.+....       +....+..+.++.+++++.+..  +.+.++|++|+|++
T Consensus        31 ~~i~l~~g~p~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~  107 (416)
T PRK09440         31 GAIMLGGGNPA--H-IPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQ  107 (416)
T ss_pred             CceeccCCCCC--c-cCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChH
Confidence            35788766542  1 121  356666666554311       1111222345556666665443  34567899999999


Q ss_pred             HHHHHHHHHHHhc---cCCceEEE-EccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHH
Q 011777          166 EANELAMLMARLS---TGNLGMIA-LRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQ  241 (477)
Q Consensus       166 eA~~~Al~~ar~~---~~~~~ii~-~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le  241 (477)
                      +|+..++++....   ..++.|++ .+++|+++...+.........       +...++.+.. ...++.|    +++++
T Consensus       108 ~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~d----~~~l~  175 (416)
T PRK09440        108 SAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSY-------RPNIELLPEG-QFKYHVD----FEHLH  175 (416)
T ss_pred             HHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeec-------cccccccccc-ccccCCC----HHHcc
Confidence            9999998865431   12467888 699999876533221110000       0011111110 0011111    24444


Q ss_pred             HHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccc--ccCCCcceeee
Q 011777          242 DHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE--TQGVIPDIVTM  319 (477)
Q Consensus       242 ~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~--~~gv~pDivt~  319 (477)
                        +.    .+++++++...+|++| .+.+.+.+++|.++|++|+++||+||+|..+-... .+....  ..+...-+.+|
T Consensus       176 --~~----~~~~~i~l~~P~NPTG-~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~-~~~~~~~~~~~~vI~~~Sf  247 (416)
T PRK09440        176 --ID----EDTGAICVSRPTNPTG-NVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGI-IFSEATPLWNPNIILCMSL  247 (416)
T ss_pred             --cC----CCceEEEEecCCCCCC-ccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCc-chhhcCccccCCeEEEecc
Confidence              12    2445555544456777 45688999999999999999999999996431111 011110  01222234479


Q ss_pred             cccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhh-----HHHHHHHHHHHHHHHHHHHHHh
Q 011777          320 AKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKER-----RQAHCADVGSHLLGRLRTLQER  394 (477)
Q Consensus       320 sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~-----~~~~~~~~~~~l~~~L~~l~~~  394 (477)
                      ||....|+|+||+++++++++.+........++.+.+.+.++.++|+.-+-..     +.+.++++.+.+++.|.+....
T Consensus       248 SK~~~pGlRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~  327 (416)
T PRK09440        248 SKLGLPGVRCGIVIADEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPD  327 (416)
T ss_pred             cccCCCcceEEEEeCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99744699999999999999888765444456678889999888886322111     1222333334444444333211


Q ss_pred             CCCceeeec-cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC-----------CCEEEEeCCCCCcHHH
Q 011777          395 HDIIGDVRG-RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH-----------GNVFRIKPPMCFTKDD  462 (477)
Q Consensus       395 ~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-----------~~~iRi~p~~~~t~e~  462 (477)
                      .+ +...++ .|+++|+++....       ....++.+.|.++||.+.|+..+           .+++||+.+  .++++
T Consensus       328 ~~-~~~~~p~gg~fiw~~~~~~~-------~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~--~~~~~  397 (416)
T PRK09440        328 EP-CLIHKPEGAIFLWLWFKDLP-------ITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYV--QDDEE  397 (416)
T ss_pred             CC-eEEecCCCceEEEEECCCCC-------CCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEec--CCHHH
Confidence            11 222334 3788888773210       11356777888999999987433           248999754  47999


Q ss_pred             HHHHHHHHHHHHhh
Q 011777          463 ADFLVDALDYSMSK  476 (477)
Q Consensus       463 i~~~l~~l~~~l~~  476 (477)
                      +++++++|.+++++
T Consensus       398 l~~~i~~l~~~~~~  411 (416)
T PRK09440        398 IEKGIAILAEEVEK  411 (416)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998864

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=1e-21  Score=195.03  Aligned_cols=314  Identities=16%  Similarity=0.130  Sum_probs=196.6

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAML  173 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~  173 (477)
                      +|..++||..+..  +++ .+|.+.+++.+.+....  ...|+.....+|++.++++++.+.++|++|+|+++++..+++
T Consensus        16 ~~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~--~~~Y~~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~   90 (337)
T PRK03967         16 EGNYRIWLDKNEN--PFD-LPEELKEEIFEELKRVP--FNRYPHITSDPLREAIAEFYGLDAENIAVGNGSDELISYLVK   90 (337)
T ss_pred             CCCceEEecCCCC--CCC-CCHHHHHHHHHHhhcCc--cccCCCCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHH
Confidence            4556788877653  454 46889999988775421  223554456788888998887777899999999999987766


Q ss_pred             HHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCee
Q 011777          174 MARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA  253 (477)
Q Consensus       174 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a  253 (477)
                      ..    .++.|++.+++|..+.......             |...+.++..  ..+..|    .+++++.+.    +...
T Consensus        91 ~~----~gd~V~v~~P~y~~~~~~~~~~-------------g~~~~~v~~~--~~~~~d----~~~l~~~~~----~~~~  143 (337)
T PRK03967         91 LF----EGKHIVITPPTFGMYSFYAKLN-------------GIPVIDVPLK--EDFTID----GERIAEKAK----NASA  143 (337)
T ss_pred             Hh----CCCeEEEeCCChHHHHHHHHHc-------------CCeEEEeecC--CCCCcC----HHHHHHhcc----CCCE
Confidence            43    4678999999997543322111             2222222211  112212    355655432    2224


Q ss_pred             EEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc-ccccCCCcceeeeccccc-CccceEE
Q 011777          254 GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG-FETQGVIPDIVTMAKGIG-NGLPLGA  331 (477)
Q Consensus       254 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~-~~~~gv~pDivt~sK~lg-~G~pig~  331 (477)
                      .+++.| +|++|.+.+    .++|.++++ +++++|+||+|.+|.. . .... .+......-+-+|||.++ .|+|+||
T Consensus       144 v~~~~P-~NPtG~~~~----~~~l~~i~~-~~~~ii~De~y~~~~~-~-~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~  215 (337)
T PRK03967        144 VFICSP-NNPTGNLQP----EEEILKVLE-TGKPVVLDEAYAEFSG-K-SLIGLIDEYPNLILLRTFSKAFGLAGIRAGY  215 (337)
T ss_pred             EEEeCC-CCCCCCCCC----HHHHHHHHh-cCCEEEEECchhhhcc-c-chHHHHhhCCCEEEEecchHhhcchhhhhee
Confidence            445555 666675554    456666774 7999999999998742 1 2211 111111222336999999 7999999


Q ss_pred             EEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEE
Q 011777          332 VVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM  410 (477)
Q Consensus       332 v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i  410 (477)
                      +++++++++.+....  ..++.+.+++.++.++|+..+. .+..+...+..+.+.+.|.    ++    ..++.|.++|+
T Consensus       216 iv~~~~~i~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~----~~----~~~~~~~~~~~  285 (337)
T PRK03967        216 AIANEEIIDALYRIK--PPFSLNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELG----EY----AYPSDANFLLL  285 (337)
T ss_pred             eecCHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc----cC----cCCCCCcEEEE
Confidence            999999998887543  3466788899998888863111 1112222233333333332    22    12355777776


Q ss_pred             EEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-CCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          411 ELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-LHGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      .+               .+.+.|+++||.+.++. ...+++||+..   +.++.+++++.|+++++
T Consensus       286 ~~---------------~~~~~l~~~gi~v~~~~~~~~~~~Ri~~~---~~~~~~~l~~~l~~~~~  333 (337)
T PRK03967        286 KL---------------DAYDYLLENGIVVRKLSGRLEGHIRVTVG---KREENDEFIKALKEIKE  333 (337)
T ss_pred             hH---------------HHHHHHHHCCEEEEeCCCCCCCeEEEecC---CHHHHHHHHHHHHHHHH
Confidence            54               16688889999997653 23578999543   67888888888887764

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.90  E-value=1.1e-20  Score=192.76  Aligned_cols=332  Identities=16%  Similarity=0.077  Sum_probs=212.6

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc-c-cccc-----CChHHHHHHHHHHhhCCC-CCCEEEEeCChHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH-A-TTIY-----LHHAIADFAEALASKMPG-NLKVVYFVNSGTE  166 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~-~-~~~~-----~~~~~~~l~~~La~~~~~-~~~~v~~~~sGse  166 (477)
                      +..|||..+..      ..++.|++++.+.+..... . ...+     ..+...++++.++++++. +.++|+|++|+||
T Consensus        23 ~~iYld~a~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~   96 (406)
T PRK09295         23 PLAYLDSAASA------QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTE   96 (406)
T ss_pred             ceEEEeCcccc------cCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHH
Confidence            45899976543      3688999999988865321 1 1111     124467888999999875 5678999999999


Q ss_pred             HHHHHHHHHH--hccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHH
Q 011777          167 ANELAMLMAR--LSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHI  244 (477)
Q Consensus       167 A~~~Al~~ar--~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i  244 (477)
                      ++..+++...  ...+++.||+.+..||+..........         ..|+....++.......+      .+++++++
T Consensus        97 ~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~---------~~g~~v~~v~~~~~~~~d------~~~l~~~i  161 (406)
T PRK09295         97 GINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCA---------RVGAELRVIPLNPDGTLQ------LETLPALF  161 (406)
T ss_pred             HHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHH---------HcCcEEEEEecCCCCCCC------HHHHHHhc
Confidence            9998887532  223567888888777764322111100         012222222211111111      47787777


Q ss_pred             hccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--cc
Q 011777          245 DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KG  322 (477)
Q Consensus       245 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~  322 (477)
                      +    +++++|++..+++++|.+.+    +++|.++|+++|+++|+|++|+ +|..   .  ++.....+|++++|  |.
T Consensus       162 ~----~~t~lv~l~~~~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~---~--~~~~~~~~D~~~~s~~K~  227 (406)
T PRK09295        162 D----ERTRLLAITHVSNVLGTENP----LAEMIALAHQHGAKVLVDGAQA-VMHH---P--VDVQALDCDFYVFSGHKL  227 (406)
T ss_pred             C----CCcEEEEEecchhcccccCC----HHHHHHHHHHcCCEEEEEcccc-cCcc---c--cCchhcCCCEEEeehhhc
Confidence            5    35778888888888998887    8999999999999999999996 4432   2  22223456777655  95


Q ss_pred             ccCccceEEEEeCHHHHHhhcccccc----------------------cCCCCcHHHHHHHHHHHHhhch---hhHHHHH
Q 011777          323 IGNGLPLGAVVTTPEIANVMAQKIQF----------------------NTFGGNPVCSAGGLAVLRVIDK---ERRQAHC  377 (477)
Q Consensus       323 lg~G~pig~v~~~~~~~~~~~~~~~~----------------------~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~  377 (477)
                      +| ...+|++++++++++.+.....+                      -+-+.|..++.+..++++.+.+   +...++.
T Consensus       228 ~g-p~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~  306 (406)
T PRK09295        228 YG-PTGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYE  306 (406)
T ss_pred             cC-CCCcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            55 23589999999987765421110                      1113567777888888887755   3455666


Q ss_pred             HHHHHHHHHHHHHHHHhCCCceee--eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC----------
Q 011777          378 ADVGSHLLGRLRTLQERHDIIGDV--RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL----------  445 (477)
Q Consensus       378 ~~~~~~l~~~L~~l~~~~~~~~~v--~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----------  445 (477)
                      +++.++++++|.++    +.+.-.  ...+.++.+.+..         ....++.+.|.++||.+..+..          
T Consensus       307 ~~l~~~l~~~l~~~----~~~~~~~~~~~~~iv~~~~~~---------~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~  373 (406)
T PRK09295        307 QNLMHYALSQLESV----PDLTLYGPQNRLGVIAFNLGK---------HHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYN  373 (406)
T ss_pred             HHHHHHHHHHHhcC----CCEEEeCCCCCceEEEEEECC---------cCHHHHHHHHHhCCeEEeccccchHHHHHHHC
Confidence            66666776666553    211111  1123344554421         1134567788889999976521          


Q ss_pred             CCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          446 HGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       446 ~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      ..+++|++++...|++|||.+++.|+++..
T Consensus       374 ~~~~iRiS~~~ynt~~did~l~~~l~~i~~  403 (406)
T PRK09295        374 VPAMCRASLAMYNTHEEVDRLVAGLQRIHR  403 (406)
T ss_pred             CCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence            135799999999999999999999988753

>PRK08354 putative aminotransferase; Provisional

Probab=99.90  E-value=4.9e-21  Score=188.11  Aligned_cols=302  Identities=15%  Similarity=0.104  Sum_probs=196.4

Q ss_pred             CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHH
Q 011777           93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAM  172 (477)
Q Consensus        93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al  172 (477)
                      .+...+|||..+.  ++++  +|.+.+++.+.++...    .|+  ....+.++++++++   ++|++|+|++||+..++
T Consensus         5 ~~~~~~i~l~~~~--np~~--p~~~~~a~~~~~~~~~----~yp--~~~~l~~~ia~~~~---~~I~vt~G~~~al~~~~   71 (311)
T PRK08354          5 IREEGLIDFSASV--NPYP--PEWLDEMFERAKEISG----RYT--YYEWLEEEFSKLFG---EPIVITAGITEALYLIG   71 (311)
T ss_pred             CCccceeEecCCC--CCCC--CHHHHHHHHHHHHHhh----cCC--ChHHHHHHHHHHHC---CCEEECCCHHHHHHHHH
Confidence            3445689998764  4454  5889999987765421    233  24678889998885   36999999999998776


Q ss_pred             HHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCe
Q 011777          173 LMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKV  252 (477)
Q Consensus       173 ~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~  252 (477)
                      .+.   .+++.|++.+++|.++...+...+.             ..+..+      .  |    .+.+++.++    +..
T Consensus        72 ~~~---~~gd~vlv~~P~y~~~~~~~~~~g~-------------~~~~~~------~--d----~~~l~~~~~----~~~  119 (311)
T PRK08354         72 ILA---LRDRKVIIPRHTYGEYERVARFFAA-------------RIIKGP------N--D----PEKLEELVE----RNS  119 (311)
T ss_pred             Hhh---CCCCeEEEeCCCcHHHHHHHHHcCC-------------EEeecC------C--C----HHHHHHhhc----CCC
Confidence            432   2567899999999887655443322             111111      1  1    366776654    233


Q ss_pred             eEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeeccccc-CccceEE
Q 011777          253 AGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIG-NGLPLGA  331 (477)
Q Consensus       253 a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg-~G~pig~  331 (477)
                      ..++++|. |++| ...+.+.+++|.++|++||+++|+||+|.+|...+ ...  . .....-+-+|||.++ .|+|+||
T Consensus       120 ~vi~~~P~-NPTG-~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~-~~~--~-~~~vi~~~S~SK~~~l~GlRiG~  193 (311)
T PRK08354        120 VVFFCNPN-NPDG-KFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKP-ESP--E-GENIIKLRTFTKSYGLPGIRVGY  193 (311)
T ss_pred             EEEEecCC-CCCC-CccCHHHHHHHHHHhhhcCcEEEEeCcchhccccc-ccc--C-CCcEEEEeccHhhcCCccceeee
Confidence            57777885 5666 46688999999999999999999999999886544 211  1 122222347999999 7999999


Q ss_pred             EEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEE
Q 011777          332 VVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGME  411 (477)
Q Consensus       332 v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~  411 (477)
                      +++   +.+.+....  ..+..+..+++++.+.++    +. .+++++..+++++..+.+....    ...+.|.|++++
T Consensus       194 ~v~---~~~~l~~~~--~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~l~~~l----~~~~~~~~~~~~  259 (311)
T PRK08354        194 VKG---FEEAFRSVR--MPWSIGSTGYAFLEFLIE----DD-FEHLRKTMPLIWREKERFEKAL----YVKSDANFFIKD  259 (311)
T ss_pred             eee---hHHHHHHcC--CCccCCHHHHHHHHHHHH----hH-HHHHHHHHHHHHHHHHHHHHhc----CCCCCCcEEEEE
Confidence            998   344444332  234445555555555443    11 2344444444555444432221    124567776665


Q ss_pred             EeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC--CCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          412 LVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH--GNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      +.        +   ..++.+.|+++||.+.++..+  .+++||+..   ++++.+++++.|+++
T Consensus       260 ~~--------~---~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~---~~~~~~~l~~al~~~  309 (311)
T PRK08354        260 VG--------D---AEKFVEFLKRNGILVRDCTSFGLPGYIRFSVR---DREENEKLIRALREW  309 (311)
T ss_pred             CC--------C---HHHHHHHHHHCCeEEEecccCCCCCeEEEEeC---CHHHHHHHHHHHHHh
Confidence            41        1   346888899999999998654  378999543   567788888888765

>PRK07908 hypothetical protein; Provisional

Probab=99.90  E-value=4.8e-21  Score=191.38  Aligned_cols=314  Identities=13%  Similarity=0.104  Sum_probs=196.4

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCC-hHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH-HAIADFAEALASKMPGNLKVVYFVNSGTEANELAML  173 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~-~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~  173 (477)
                      +..++||..+..  +++ .++.+.+++.+.+....    .|.. ....++++.++++++.+.++|++|+|++||+..+++
T Consensus        21 ~~~~~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~----~Y~~~~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~   93 (349)
T PRK07908         21 GPGLLDFAVNVR--HDT-PPEWLRERLAARLGDLA----AYPSTEDERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR   93 (349)
T ss_pred             CCCeEEecCCCC--CCC-CCHHHHHHHHHHhhHhh----cCCCccchHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh
Confidence            568999987663  344 57889999998876432    2332 346678888888887777899999999999998877


Q ss_pred             HHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCee
Q 011777          174 MARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA  253 (477)
Q Consensus       174 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a  253 (477)
                       .   .+ +++++..++|.+........             |...+.+|...  .++.|    .++    ++    .+++
T Consensus        94 -l---~~-~~viv~~P~y~~~~~~~~~~-------------G~~i~~v~~~~--~~~~d----~~~----l~----~~~~  141 (349)
T PRK07908         94 -L---RP-RRAAVVHPSFTEPEAALRAA-------------GIPVHRVVLDP--PFRLD----PAA----VP----DDAD  141 (349)
T ss_pred             -c---CC-CeEEEeCCCChHHHHHHHHc-------------CCEEEeeccCc--ccCcC----hhH----hc----cCCC
Confidence             2   23 56777888887654322221             22332222211  12211    122    22    2345


Q ss_pred             EEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee---eeccccc-Cccce
Q 011777          254 GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV---TMAKGIG-NGLPL  329 (477)
Q Consensus       254 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pi  329 (477)
                      ++++...++++|.+.+    .++|.++|++ +.++|+||+|..|. .+ ....+...+. ++++   +|||.++ .|+|+
T Consensus       142 ~i~l~np~NPTG~~~~----~~~l~~l~~~-~~~iIvDe~y~~~~-~~-~~~~l~~~~~-~~~i~i~S~SK~~~l~GlRi  213 (349)
T PRK07908        142 LVVIGNPTNPTSVLHP----AEQLLALRRP-GRILVVDEAFADAV-PG-EPESLAGDDL-PGVLVLRSLTKTWSLAGLRV  213 (349)
T ss_pred             EEEEcCCCCCCCCCcC----HHHHHHHHhc-CCEEEEECcchhhc-cC-CccccccccC-CCEEEEeecccccCCcccee
Confidence            5555444566776665    4567777864 78888999998773 23 2222211111 2333   6899999 79999


Q ss_pred             EEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccce
Q 011777          330 GAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGL  406 (477)
Q Consensus       330 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~  406 (477)
                      ||+++++++++.+.....  .+..+++.++++.+.++-...   ++..++++++.+++.+.|++    ++........|.
T Consensus       214 G~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~----~~~~~~~p~~g~  287 (349)
T PRK07908        214 GYALGAPDVLARLTRGRA--HWPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRA----VGARVVDPAAAP  287 (349)
T ss_pred             eeeecCHHHHHHHHhcCC--CCCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh----CCcEeccCCCce
Confidence            999999999988875432  245566666665555441100   12233344444444444433    332212224588


Q ss_pred             eEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          407 MVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       407 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      ++|+.+.        .   ...+.+.|+++||.+.++..+    .+++||++   .+++++++++++|++++.
T Consensus       288 ~~~~~~~--------~---~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~---~~~~~~~~l~~al~~~~~  346 (349)
T PRK07908        288 FVLVRVP--------D---AELLRKRLRERGIAVRRGDTFPGLDPDYLRLAV---RPRAEVPVLVQALAEILK  346 (349)
T ss_pred             EEEEECC--------c---HHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEe---CCCccHHHHHHHHHHHHh
Confidence            8888762        1   346788889999999987543    47999975   478899999999998765

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.90  E-value=1.1e-21  Score=199.36  Aligned_cols=340  Identities=14%  Similarity=0.078  Sum_probs=198.3

Q ss_pred             EEEeecCCcccccCCCCC--HHHHHHHHHHHhhc---cccccccCChHHHHHHHHHHhhCC--CCCCEE--EEeCChHHH
Q 011777           97 RYLDAFAGIVTVSCGHCH--PDVLNAIFEQSKLL---QHATTIYLHHAIADFAEALASKMP--GNLKVV--YFVNSGTEA  167 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~--p~v~~Av~~~l~~~---~~~~~~~~~~~~~~l~~~La~~~~--~~~~~v--~~~~sGseA  167 (477)
                      ..|||..|....+-++.+  +.+.+++.+.++..   .|....+..+.++.+++++.+...  .+.++|  ++|+|+++|
T Consensus        27 ~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~a  106 (396)
T PRK09257         27 DKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGA  106 (396)
T ss_pred             CcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHH
Confidence            457888776433323333  67888877765432   122223334455555655544322  145666  999999999


Q ss_pred             HHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc
Q 011777          168 NELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG  247 (477)
Q Consensus       168 ~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~  247 (477)
                      +..++++.....+++.|++.+++|.++.......+             ...+++|......++.|    .+++++.++..
T Consensus       107 l~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g-------------~~~v~v~~~~~~~~~~d----~~~l~~~~~~~  169 (396)
T PRK09257        107 LRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAG-------------LEVKTYPYYDAATKGLD----FDAMLADLSQA  169 (396)
T ss_pred             HHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcC-------------CcEEEEeccccccCccC----HHHHHHHHHhC
Confidence            99998755433467899999999998865544432             22222221000011111    47777777632


Q ss_pred             CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCC-Cccc---cc-cCCCcceeeeccc
Q 011777          248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH-YWGF---ET-QGVIPDIVTMAKG  322 (477)
Q Consensus       248 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~-~~~~---~~-~gv~pDivt~sK~  322 (477)
                       ..+..++++...||++| .+++++.+++|.++|++||+++|+||+|.+|...... ...+   .. .+...-+-+|||.
T Consensus       170 -~~~~~~~i~~~p~NPTG-~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~  247 (396)
T PRK09257        170 -PAGDVVLLHGCCHNPTG-ADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKN  247 (396)
T ss_pred             -CCCCEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCc
Confidence             22334555455666677 5668999999999999999999999999988643101 1111   11 1122234479999


Q ss_pred             ccC-ccceEEEEe---CHH----HHHhhcccccccCCCCcHHHHHHHHHHHHhhch----hhHHHHHHHHHHHHHHHHHH
Q 011777          323 IGN-GLPLGAVVT---TPE----IANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK----ERRQAHCADVGSHLLGRLRT  390 (477)
Q Consensus       323 lg~-G~pig~v~~---~~~----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~----~~~~~~~~~~~~~l~~~L~~  390 (477)
                      ++. |+|+||+++   +++    ++..+.........+.+++.+.++.+.|+.-.-    +++++++++..+..++.+.+
T Consensus       248 ~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~  327 (396)
T PRK09257        248 FGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVE  327 (396)
T ss_pred             CccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            995 999999973   444    333333222223344577888777777753210    22223333333333333333


Q ss_pred             HHHhCC---Ccee-eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHH
Q 011777          391 LQERHD---IIGD-VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFL  466 (477)
Q Consensus       391 l~~~~~---~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~  466 (477)
                      ..+++.   .+.. .+..|+++|+.+.            ...+.+.+.++||.+.|.    +  ||+++ ..++++|+++
T Consensus       328 ~L~~~~~~~~~~~~~p~gg~~~w~~l~------------~~~~~~l~~~~~V~~~p~----~--ri~~~-~~~~~~i~~~  388 (396)
T PRK09257        328 ALKAKGPSRDFDFIARQRGMFSYSGLT------------PEQVDRLREEFGVYAVGS----G--RINVA-GLNESNIDYV  388 (396)
T ss_pred             HHHhcCCCCCcccccccceEEEecCCC------------HHHHHHHHHcCCEEEcCC----C--eEEEe-eCCHHHHHHH
Confidence            333332   1222 2334677777651            123455567789998763    2  88653 3789999999


Q ss_pred             HHHHHHHH
Q 011777          467 VDALDYSM  474 (477)
Q Consensus       467 l~~l~~~l  474 (477)
                      +++|.+++
T Consensus       389 ~~~i~~~~  396 (396)
T PRK09257        389 AEAIAAVL  396 (396)
T ss_pred             HHHHHhhC
Confidence            99998764

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=8.7e-22  Score=197.61  Aligned_cols=297  Identities=14%  Similarity=0.115  Sum_probs=188.8

Q ss_pred             cCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCC
Q 011777          135 YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQG  214 (477)
Q Consensus       135 ~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~  214 (477)
                      |+.+...+|++.|+++++.+.++|++++|+++++..+++.... .+++.|++.+++|..+.......             
T Consensus        56 Y~~~~~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~~-~g~~~vlv~~p~y~~~~~~~~~~-------------  121 (364)
T PRK04781         56 YPDPQPPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALCV-PGRDAVLVTPPVFGMYAVCARLQ-------------  121 (364)
T ss_pred             CCCCCHHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhcC-CCCCeEEEcCCChHHHHHHHHHc-------------
Confidence            4444567899999998877778999999999999998875532 23367787777765332221111             


Q ss_pred             CeeeecCCCC-cCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCc
Q 011777          215 EIHHVVNPDP-YHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEV  293 (477)
Q Consensus       215 ~~~~~~~~~~-~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv  293 (477)
                      |...+.+|.. ....+..|    .+++++.+.   ..++++|++...++++|.+. +.+.++++.+.|+ +++++|+||+
T Consensus       122 g~~~~~v~~~~~~~~~~~d----~~~l~~~~~---~~~~~lv~l~~p~NPTG~~~-~~~~~~~l~~~~~-~~~~iI~Dea  192 (364)
T PRK04781        122 NAPLVEVPLVDGADGFHAD----VPAIVAAAL---ASNAKLVFLCSPSNPAGSAI-ALDQIERALQALQ-GKALVVVDEA  192 (364)
T ss_pred             CCEEEEEecCCCccCCCcC----HHHHHHHHh---ccCCeEEEEcCCCCCCCCCc-CHHHHHHHHHhCC-CCcEEEEeCc
Confidence            2222222211 00111111    244433322   23556666656667777544 6777777777775 4799999999


Q ss_pred             ccCccCCCCCCcc-ccccCCCcceeeeccccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchh
Q 011777          294 QTGFGRTGSHYWG-FETQGVIPDIVTMAKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKE  371 (477)
Q Consensus       294 ~~gfgr~G~~~~~-~~~~gv~pDivt~sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~  371 (477)
                      |..|.... .... .+..+...-+-||||.+| .|+|+||+++++++++.+....  ..++.+.+++.++.++|+.-..+
T Consensus       193 y~~f~~~~-~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~~--~~~~~~~~~~~~a~~~l~~~~~~  269 (364)
T PRK04781        193 YGEFSDVP-SAVGLLARYDNLAVLRTLSKAHALAAARIGSLIANAELIAVLRRCQ--APYPVPTPCAALAEQALSAPALA  269 (364)
T ss_pred             chhhcCCc-chHHHHhhCCCEEEEecChhhcccccceeeeeeCCHHHHHHHHhcc--CCCCCCHHHHHHHHHHHhcccHH
Confidence            99885422 1111 122222223447999999 7999999999999999887643  45677888888888877642112


Q ss_pred             h---HHHHHHHHHHHHHHHHHHHHHhCCCc-eeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--
Q 011777          372 R---RQAHCADVGSHLLGRLRTLQERHDII-GDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--  445 (477)
Q Consensus       372 ~---~~~~~~~~~~~l~~~L~~l~~~~~~~-~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--  445 (477)
                      .   ..+.+++.++.+.+.|+    +++.+ ...+..|+++|+++.        .   ..++.+.|.++||.+.++..  
T Consensus       270 ~~~~~~~~~~~~r~~l~~~L~----~~~~~~~~~p~~g~f~~~~~~--------~---~~~~~~~l~~~gI~v~~~~~~~  334 (364)
T PRK04781        270 VTARRVAEVRAERERLHAALA----QLPGVRRVYPSQGNFLLVRFD--------D---AEAAFQALLAAGVVVRDQRAAP  334 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----hCCCCCeECCCCCcEEEEEcC--------C---HHHHHHHHHHCCeEEeeCCCCC
Confidence            2   22333444444444443    34322 234567899898762        1   35678889999999998743  


Q ss_pred             -CCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          446 -HGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       446 -~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                       .++++||+.   .++++.++++++|+++..
T Consensus       335 ~~~~~~Ris~---~~~~~~~~l~~al~~~~~  362 (364)
T PRK04781        335 RLSDALRITL---GTPEQNDRVLAALQRTQA  362 (364)
T ss_pred             CCCCeEEEeC---CCHHHHHHHHHHHHHHHh
Confidence             257899954   368999999999988654

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.90  E-value=4.7e-21  Score=196.43  Aligned_cols=312  Identities=15%  Similarity=0.146  Sum_probs=188.5

Q ss_pred             ChHHHHHHHHHHhhC----CCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCC
Q 011777          137 HHAIADFAEALASKM----PGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP  212 (477)
Q Consensus       137 ~~~~~~l~~~La~~~----~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  212 (477)
                      .+.+.++++.+.+.+    +.+.++|++|+|+++|++.++....  .+++.|++..+.|.+........           
T Consensus        98 ~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~--~pGD~Vlv~~P~Y~~f~~~~~~~-----------  164 (447)
T PLN02607         98 KSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILA--DPGDALLVPTPYYPGFDRDLRWR-----------  164 (447)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhC--CCCCEEEEcCCCCcchHHHHHhc-----------
Confidence            344556666666543    2456789999999999999876543  36788999999998875432211           


Q ss_pred             CCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEE
Q 011777          213 QGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA  290 (477)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  290 (477)
                       .++..++++.....+|..+    .++++++++..  ...+++++++...+|++| .+++++.+++|.++|++|++.||+
T Consensus       165 -~g~~vv~v~~~~~~~f~~~----~~~le~a~~~a~~~~~~vk~lll~nP~NPtG-~~~s~e~l~~l~~~~~~~~i~lI~  238 (447)
T PLN02607        165 -TGVKIVPIHCDSSNNFQVT----PQALEAAYQEAEAANIRVRGVLITNPSNPLG-ATVQRSVLEDILDFVVRKNIHLVS  238 (447)
T ss_pred             -CCcEEEEEeCCCCCCCcCC----HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcC-cccCHHHHHHHHHHHHHCCCEEEE
Confidence             1233333332211223222    36666666521  123565555544455666 567899999999999999999999


Q ss_pred             cCcccCccCCCCCCccc-c---ccCC-C-cc----eeeeccccc-CccceEEEEe-CHHHHHhhcccccccCC-CCcHHH
Q 011777          291 DEVQTGFGRTGSHYWGF-E---TQGV-I-PD----IVTMAKGIG-NGLPLGAVVT-TPEIANVMAQKIQFNTF-GGNPVC  357 (477)
Q Consensus       291 DEv~~gfgr~G~~~~~~-~---~~gv-~-pD----ivt~sK~lg-~G~pig~v~~-~~~~~~~~~~~~~~~t~-~~~~~~  357 (477)
                      ||+|.++-+.+..+..+ +   ..+. . ++    +-+|||.+| .|+|+||+++ ++++.+.+....   .| +.+.++
T Consensus       239 DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~~---~~~~~s~~~  315 (447)
T PLN02607        239 DEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS---SFTLVSSQT  315 (447)
T ss_pred             eccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHHh---hcCCCCHHH
Confidence            99999754433122221 1   1110 1 22    236999999 7999999998 677776665432   22 345667


Q ss_pred             HHHHHHHHHhhchhhHH-HHHHHHHHHHHH---HHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHH
Q 011777          358 SAGGLAVLRVIDKERRQ-AHCADVGSHLLG---RLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKL  433 (477)
Q Consensus       358 ~aaa~a~l~~l~~~~~~-~~~~~~~~~l~~---~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l  433 (477)
                      +.++.+.|+   ++++. +.+.++.+++++   .+.+..+++++.......|+|+|+++....  ..+......++++.+
T Consensus       316 q~~~~~~L~---d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~gi~~~~~~ag~fvw~~L~~~~--~~~~~~~e~~l~~~l  390 (447)
T PLN02607        316 QHLLASMLS---DEEFTENYIRTNRERLRKRYEMIVQGLRRAGIECLKGNAGLFCWMNLSPLL--ETPTREGELALWDSI  390 (447)
T ss_pred             HHHHHHHhC---CchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCeeEEEEEEchHhh--cCCCchhHHHHHHHH
Confidence            776666654   33332 223333333333   233333344432222334789999984211  011112234566666


Q ss_pred             HH-cCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          434 RE-LGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       434 ~~-~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ++ .||.+.||..+    .+++|+++.. .+++++++++++|.+++++
T Consensus       391 l~~~gV~v~pG~~f~~~~~g~fRi~fa~-~~~~~l~~gl~Ri~~~l~~  437 (447)
T PLN02607        391 LREVKLNISPGSSCHCSEPGWFRVCFAN-MSEDTLEVALKRIHRFMDR  437 (447)
T ss_pred             HHhCCEEEcCccccCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Confidence            54 79999998543    4799997543 4789999999999998853

>PLN02231 alanine transaminase

Probab=99.90  E-value=4.3e-21  Score=200.05  Aligned_cols=336  Identities=15%  Similarity=0.132  Sum_probs=201.1

Q ss_pred             CHHHHHHHHHHHhhc------cccccccCChHHHHHHHHHHhhC--CCCCCEEEEeCChHHHHHHHHHHHHhccCCceEE
Q 011777          114 HPDVLNAIFEQSKLL------QHATTIYLHHAIADFAEALASKM--PGNLKVVYFVNSGTEANELAMLMARLSTGNLGMI  185 (477)
Q Consensus       114 ~p~v~~Av~~~l~~~------~~~~~~~~~~~~~~l~~~La~~~--~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii  185 (477)
                      +.++++...+.+...      .|+...+..+.++.+++++.+..  +.+.++|++|+|+++|+..++++... .+++.|+
T Consensus       142 p~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~-~~gd~Vl  220 (534)
T PLN02231        142 SADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SEKDGIL  220 (534)
T ss_pred             CHHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhcc-CCCCEEE
Confidence            346666666666542      12222334455666666666543  34568999999999999999986642 2468899


Q ss_pred             EEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC--CCCeeE-EEecccCC
Q 011777          186 ALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT--SGKVAG-FIAETIQG  262 (477)
Q Consensus       186 ~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~--~~~~a~-vi~epi~~  262 (477)
                      +..++|.++.......+             ...++++......|+.|    .++|++.++...  ..++++ ++++| +|
T Consensus       221 i~~P~Y~~y~~~~~~~g-------------~~~v~~~l~~~~~~~~d----~~~Le~~l~~~~~~~~~~k~ivl~nP-~N  282 (534)
T PLN02231        221 CPIPQYPLYSASIALHG-------------GTLVPYYLDEATGWGLE----ISELKKQLEDARSKGITVRALVVINP-GN  282 (534)
T ss_pred             EeCCCChhHHHHHHHcC-------------CEEEEEecCcccCCCCC----HHHHHHHHHHHhhcCCCeEEEEEeCC-CC
Confidence            99999998765443332             22222222111122222    477777775321  114554 55555 55


Q ss_pred             CCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCC-CCCCccccc----cCC---Cccee---eeccccc--Cccce
Q 011777          263 VGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRT-GSHYWGFET----QGV---IPDIV---TMAKGIG--NGLPL  329 (477)
Q Consensus       263 ~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~-G~~~~~~~~----~gv---~pDiv---t~sK~lg--~G~pi  329 (477)
                      ++| .+++++.+++|.++|++||++||+||+|..+.+. +..+..+..    .|.   ...++   +|||++.  .|+|+
T Consensus       283 PTG-~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRi  361 (534)
T PLN02231        283 PTG-QVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRG  361 (534)
T ss_pred             CCC-cCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccce
Confidence            666 5678999999999999999999999999988664 322222211    111   12234   6899984  59999


Q ss_pred             EEEEe---CHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc--h---h-------hHHHHHHHHHHHHHHHHHHHHHh
Q 011777          330 GAVVT---TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID--K---E-------RRQAHCADVGSHLLGRLRTLQER  394 (477)
Q Consensus       330 g~v~~---~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~--~---~-------~~~~~~~~~~~~l~~~L~~l~~~  394 (477)
                      ||+++   ++++++.+..... .+.+.+.++++++..+++.-.  +   +       ++.+.++++.+.+.+.|+    +
T Consensus       362 Gy~~~~~~~~~l~~~l~k~~~-~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~----~  436 (534)
T PLN02231        362 GYMEVTGFTSDVREQIYKVAS-VNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALN----S  436 (534)
T ss_pred             EEEEEecCCHHHHHHHHHHHh-hhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh----c
Confidence            99986   6888887765432 345567788888777774210  0   1       123334444444444443    3


Q ss_pred             CCCceeeeccceeEEE-EEeeCCCCCCcc----HHHHHHHHHHHH-HcCceeeccCCCC-----CEEEEeCCCCCcHHHH
Q 011777          395 HDIIGDVRGRGLMVGM-ELVTDRKEKTPA----KAETAVLFEKLR-ELGVLVGKGGLHG-----NVFRIKPPMCFTKDDA  463 (477)
Q Consensus       395 ~~~~~~v~g~g~~~~i-~~~~~~~~~~~~----~~~~~~~~~~l~-~~Gv~v~~~~~~~-----~~iRi~p~~~~t~e~i  463 (477)
                      ++.+...++.|.|+.+ .+.-........    ......++..|+ +.||.+.||..++     +++|++  +..+++++
T Consensus       437 ~~gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit--~~~~~e~l  514 (534)
T PLN02231        437 LEGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCT--ILPQEDKI  514 (534)
T ss_pred             CCCceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEE--eCCCHHHH
Confidence            4444555566655543 332110000000    000123444444 6799999986443     368996  56789999


Q ss_pred             HHHHHHHHHHHhh
Q 011777          464 DFLVDALDYSMSK  476 (477)
Q Consensus       464 ~~~l~~l~~~l~~  476 (477)
                      ++++++|.+++++
T Consensus       515 ~eal~RL~~~~~~  527 (534)
T PLN02231        515 PAIVSRLTEFHKS  527 (534)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988754

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.90  E-value=5e-21  Score=191.62  Aligned_cols=320  Identities=17%  Similarity=0.182  Sum_probs=203.7

Q ss_pred             CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCC--EEEEeCChHHHHHHHHHHHHhccCCceEEEEccC
Q 011777          113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLK--VVYFVNSGTEANELAMLMARLSTGNLGMIALRNA  190 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~--~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~  190 (477)
                      .+|.|.+++...   ..+....| .+...++++.|+++++.+.+  .+++++||+++++.++....  .+++++++..++
T Consensus        10 ~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~--~~~~~vi~~~~~   83 (355)
T TIGR03301        10 TSATVRDAMLVD---WCHWDSEF-NDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV--PRDGKLLVLING   83 (355)
T ss_pred             CCHHHHHHhhhh---ccCCCHHH-HHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc--CCCCeEEEECCC
Confidence            356777776652   22222223 36678899999999876433  68899999999999998653  245677888887


Q ss_pred             ccCCcccccc-cccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeC
Q 011777          191 YHGGSSGTIG-LTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVEL  269 (477)
Q Consensus       191 yhG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~  269 (477)
                      +++....... ..+.          .+..++.+.  ....+      .+++++.++.  ..++..+++..+++++|.+.+
T Consensus        84 ~~~~~~~~~a~~~g~----------~~~~i~~~~--~~~~d------~~~l~~~l~~--~~~~~~v~~~~~~~~~G~~~~  143 (355)
T TIGR03301        84 AYGERLAKICEYLGI----------PHTDLNFSE--YEPPD------LNRIEEALAA--DPDITHVATVHHETTTGILNP  143 (355)
T ss_pred             chhhHHHHHHHHcCC----------ceEEEecCC--CCCCC------HHHHHHHHHh--CCCceEEEEEecCCcccchhH
Confidence            7765321111 1111          122222111  11111      4788888762  134455554445566777766


Q ss_pred             CchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccc---
Q 011777          270 APGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKI---  346 (477)
Q Consensus       270 ~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~---  346 (477)
                          +++|.++|++||+++|+|++++ ||.   ..+.+..+++...+.+++|+++++.++|++++++++++.+....   
T Consensus       144 ----~~~i~~l~~~~~~~livD~~~s-~g~---~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~  215 (355)
T TIGR03301       144 ----LEAIAKVARSHGAVLIVDAMSS-FGA---IPIDIEELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSL  215 (355)
T ss_pred             ----HHHHHHHHHHcCCEEEEEeccc-cCC---cccchhhcCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCc
Confidence                8999999999999999999876 542   22333444444344578899987666899999999888765210   


Q ss_pred             --------------cccCCCCcHHHHHHHHHHHHhhchh----hHHHHHHHHHHHHHHHHHHHHHhCCCcee-eecccee
Q 011777          347 --------------QFNTFGGNPVCSAGGLAVLRVIDKE----RRQAHCADVGSHLLGRLRTLQERHDIIGD-VRGRGLM  407 (477)
Q Consensus       347 --------------~~~t~~~~~~~~aaa~a~l~~l~~~----~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-v~g~g~~  407 (477)
                                    ....++.+..++.++.++++.+.++    +..++++++.+++++.|+++  ....+.. ....+.+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~--g~~~~~~~~~~~~~~  293 (355)
T TIGR03301       216 YLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL--GFQPLLPERWQSPII  293 (355)
T ss_pred             eeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc--CCeeecCCCCCCCcE
Confidence                          0123456777778888888876543    34556666777777777654  1211111 1223445


Q ss_pred             EEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC-CCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          408 VGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH-GNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       408 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      +++.+...     + .....++.+.|.++||++.++... .+++||++...++++|++++++.|++++
T Consensus       294 ~~~~~~~~-----~-~~~~~~~~~~l~~~gi~i~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~  355 (355)
T TIGR03301       294 VSFLYPDD-----P-DFDFDDFYQELKERGFVIYPGKLTLADTFRIGTIGEIDAADIERLLEAIKDAL  355 (355)
T ss_pred             EEEECCCC-----C-cchHHHHHHHHHHCCEEEECCccccccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence            56655211     1 112457889999999999887422 3689999888899999999999998764

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.89  E-value=1.7e-20  Score=189.17  Aligned_cols=318  Identities=18%  Similarity=0.154  Sum_probs=201.8

Q ss_pred             CCCCCHHHHHHHHHHHhhccccccccC-------ChHHHHHHHHHHhhCCCC-CCEEEEeCChHHHHHHHHHHHHhc-cC
Q 011777          110 CGHCHPDVLNAIFEQSKLLQHATTIYL-------HHAIADFAEALASKMPGN-LKVVYFVNSGTEANELAMLMARLS-TG  180 (477)
Q Consensus       110 lGh~~p~v~~Av~~~l~~~~~~~~~~~-------~~~~~~l~~~La~~~~~~-~~~v~~~~sGseA~~~Al~~ar~~-~~  180 (477)
                      .|-.++.+.+++.+.+.........+.       .....++.+.++++++.+ .+.+++++|+++|+..+++.+... .+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~~~   87 (373)
T cd06453           8 TSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRANKP   87 (373)
T ss_pred             ccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcCCC
Confidence            345689999999888765322111111       233567888999998765 568999999999999999866431 14


Q ss_pred             CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEeccc
Q 011777          181 NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETI  260 (477)
Q Consensus       181 ~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi  260 (477)
                      +++|++.++.|.+..........         ..|.....++.......+      .+++++.+.    +++++|++..+
T Consensus        88 g~~vl~~~~~~~~~~~~~~~~~~---------~~g~~~~~v~~~~~~~~d------~~~l~~~l~----~~~~~v~~~~~  148 (373)
T cd06453          88 GDEIVTSVMEHHSNIVPWQQLAE---------RTGAKLKVVPVDDDGQLD------LEALEKLLT----ERTKLVAVTHV  148 (373)
T ss_pred             CCEEEECcchhHHHHHHHHHHHh---------hcCcEEEEeecCCCCCcC------HHHHHHHhc----CCceEEEEeCc
Confidence            56788877666543211111000         011122111111111111      578888775    36778888777


Q ss_pred             CCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCHHH
Q 011777          261 QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPEI  338 (477)
Q Consensus       261 ~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~~  338 (477)
                      ++++|.+.+    +++|.++|++||++||+|++++ +|..     .++.....+|++++|  |.+++ .++|++++++++
T Consensus       149 ~~~tG~~~~----~~~i~~~~~~~~~~li~D~a~~-~~~~-----~~~~~~~~~d~~~~s~~K~~~~-~g~g~~~~~~~~  217 (373)
T cd06453         149 SNVLGTINP----VKEIGEIAHEAGVPVLVDGAQS-AGHM-----PVDVQDLGCDFLAFSGHKMLGP-TGIGVLYGKEEL  217 (373)
T ss_pred             ccccCCcCC----HHHHHHHHHHcCCEEEEEhhhh-cCce-----eeeccccCCCEEEeccccccCC-CCcEEEEEchHH
Confidence            778887776    8999999999999999999986 3321     122223457888887  99987 678999999998


Q ss_pred             HHhhccccccc---------------------CCCCcHHHHHHHHHHHHhhchh---hHHHHHHHHHHHHHHHHHHHHHh
Q 011777          339 ANVMAQKIQFN---------------------TFGGNPVCSAGGLAVLRVIDKE---RRQAHCADVGSHLLGRLRTLQER  394 (477)
Q Consensus       339 ~~~~~~~~~~~---------------------t~~~~~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~  394 (477)
                      .+.+.....++                     ..+.|..+..+..++++.+.++   +..++.+++.+++++.|+++   
T Consensus       218 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~---  294 (373)
T cd06453         218 LEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEI---  294 (373)
T ss_pred             hhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcC---
Confidence            87766432111                     1123445555666677766553   34455555555555555443   


Q ss_pred             CCCce---eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC----------CCCEEEEeCCCCCcHH
Q 011777          395 HDIIG---DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL----------HGNVFRIKPPMCFTKD  461 (477)
Q Consensus       395 ~~~~~---~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----------~~~~iRi~p~~~~t~e  461 (477)
                       +.+.   .....+.++.+.+..         ....++.+.|.++||.+.++..          ..+++|++++..+|++
T Consensus       295 -~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~  364 (373)
T cd06453         295 -PGVRVYGDAEDRAGVVSFNLEG---------IHPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEE  364 (373)
T ss_pred             -CCeEEeCCccccCCeEEEEECC---------cCHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHH
Confidence             3222   112345566666521         1245788899999999875531          1468999999999999


Q ss_pred             HHHHHHHHH
Q 011777          462 DADFLVDAL  470 (477)
Q Consensus       462 ~i~~~l~~l  470 (477)
                      |+|++++.|
T Consensus       365 di~~~~~~l  373 (373)
T cd06453         365 EIDALVEAL  373 (373)
T ss_pred             HHHHHHhhC
Confidence            999999864

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.89  E-value=2.3e-21  Score=197.43  Aligned_cols=337  Identities=14%  Similarity=0.091  Sum_probs=194.7

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhc-------cccccccCChHHHHHHHHHHhhCC--CCCCEEE--EeCCh
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL-------QHATTIYLHHAIADFAEALASKMP--GNLKVVY--FVNSG  164 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~-------~~~~~~~~~~~~~~l~~~La~~~~--~~~~~v~--~~~sG  164 (477)
                      ...+|+..|.... .. .++.+.+++.+.+...       .|....+..+.++.+++++.+...  .+.++|.  .|++|
T Consensus        29 ~~~i~l~~g~~~~-~~-~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~  106 (404)
T PTZ00376         29 PSKVNLGIGAYRD-EN-GKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSG  106 (404)
T ss_pred             cccEecccceeEC-CC-CCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCc
Confidence            3557877765321 11 2223344444443221       122222333444555555433321  2456787  48999


Q ss_pred             HHHHHHHHHHHHhc-cCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHH
Q 011777          165 TEANELAMLMARLS-TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDH  243 (477)
Q Consensus       165 seA~~~Al~~ar~~-~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~  243 (477)
                      ++|+..++.+.+.. .+++.|++.+++|+++.......+.             ..+++|......++.|    .+.+++.
T Consensus       107 ~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~l~~~~~~~~d----~~~l~~~  169 (404)
T PTZ00376        107 TGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGL-------------NVKEYRYYDPKTKGLD----FDGMLED  169 (404)
T ss_pred             chHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCC-------------ceeeccccCcccCCcC----HHHHHHH
Confidence            99999988754333 4578899999999988665444322             2222221000111112    4677777


Q ss_pred             HhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC--CC---cccc-ccCCCccee
Q 011777          244 IDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS--HY---WGFE-TQGVIPDIV  317 (477)
Q Consensus       244 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~--~~---~~~~-~~gv~pDiv  317 (477)
                      ++... .+..++++...||++| ..++++.+++|.++|++||++||+||+|.+|.+.+.  ..   ..+. ..+...-+.
T Consensus       170 ~~~~~-~~~~~~~~~~p~NPTG-~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~  247 (404)
T PTZ00376        170 LRTAP-NGSVVLLHACAHNPTG-VDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQ  247 (404)
T ss_pred             HHhCC-CCCEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEE
Confidence            75322 2345555555566666 566899999999999999999999999998865330  01   1111 111123344


Q ss_pred             eeccccc-CccceEEE---EeCHHHHHhhccc---ccccCC-CCcHHHHHHHHHHHHhhch-hhH-------HHHHHHHH
Q 011777          318 TMAKGIG-NGLPLGAV---VTTPEIANVMAQK---IQFNTF-GGNPVCSAGGLAVLRVIDK-ERR-------QAHCADVG  381 (477)
Q Consensus       318 t~sK~lg-~G~pig~v---~~~~~~~~~~~~~---~~~~t~-~~~~~~~aaa~a~l~~l~~-~~~-------~~~~~~~~  381 (477)
                      +|||.++ .|+|+||+   ++++++++.+...   ....++ +.+++++.++.++|+.-+- +.+       .++++++.
T Consensus       248 SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r  327 (404)
T PTZ00376        248 SFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMR  327 (404)
T ss_pred             eCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            7999999 79999998   5788765544221   112333 3467888888888853210 122       23344444


Q ss_pred             HHHHHHHHHHHHhCC-Cceeeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccCCCCCEEEEeCCCCC
Q 011777          382 SHLLGRLRTLQERHD-IIGDVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGGLHGNVFRIKPPMCF  458 (477)
Q Consensus       382 ~~l~~~L~~l~~~~~-~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~~~~iRi~p~~~~  458 (477)
                      +.+.+.|+++.  .+ ......+. |+++|+.+.             .++++.|.++ ||.+.|++      |++.+. .
T Consensus       328 ~~l~~~L~~~~--~~~~~~~~~p~gg~f~~~~~~-------------~~~~~~L~~~~~v~v~p~~------Ris~~~-~  385 (404)
T PTZ00376        328 QLLYDELKALG--SPGDWEHIINQIGMFSFTGLT-------------KEQVERLIEKYHIYLLDNG------RISVAG-L  385 (404)
T ss_pred             HHHHHHHHhcC--CCCcccccccCceEEEecCCC-------------HHHHHHHHHhCCEeecCCC------eEEEec-c
Confidence            44544444431  11 11122233 566666541             2466667766 99998862      886532 7


Q ss_pred             cHHHHHHHHHHHHHHHh
Q 011777          459 TKDDADFLVDALDYSMS  475 (477)
Q Consensus       459 t~e~i~~~l~~l~~~l~  475 (477)
                      +++++++++++|++++.
T Consensus       386 ~~~~~~~~~~~l~~~~~  402 (404)
T PTZ00376        386 TSKNVDYVAEAIHDVVR  402 (404)
T ss_pred             CHHhHHHHHHHHHHHHh
Confidence            89999999999998875

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.89  E-value=1.3e-20  Score=191.58  Aligned_cols=325  Identities=17%  Similarity=0.102  Sum_probs=198.9

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc-cccccC-----ChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH-ATTIYL-----HHAIADFAEALASKMPGNLKVVYFVNSGTEANE  169 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~-~~~~~~-----~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~  169 (477)
                      ..|||..+.      |..++.+.+++.+.+..... ....|.     .+...++.+.++++++.+.+.|++++|+++++.
T Consensus        18 ~~yl~~~~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~   91 (397)
T TIGR01976        18 RVFFDNPAG------TQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTF   91 (397)
T ss_pred             eEEecCCcc------CCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHH
Confidence            478886543      34689999999998865321 111121     244678999999999776667999999999988


Q ss_pred             HHHHHHHh-ccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCc-CCCCCCCHHHHHHHHHHHHhcc
Q 011777          170 LAMLMARL-STGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPY-HGSFGSDAARYAQDLQDHIDFG  247 (477)
Q Consensus       170 ~Al~~ar~-~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~le~~i~~~  247 (477)
                      .++..... ..++++|++.++.|++...........         .|.....++... ...++      .+++++.++  
T Consensus        92 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~------~~~l~~~i~--  154 (397)
T TIGR01976        92 LLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAER---------AGAKVKWARVDEATGELH------PDDLASLLS--  154 (397)
T ss_pred             HHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHh---------cCCEEEEEeccccCCCcC------HHHHHHhcC--
Confidence            77765422 345678888877776543221111000         011111111111 01111      477777775  


Q ss_pred             CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccC
Q 011777          248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN  325 (477)
Q Consensus       248 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~  325 (477)
                        +++++|+++.+++++|.+.+    +++|.++|++||+++|+||+|. +|.   ....+.  ...+|++  +++|.+  
T Consensus       155 --~~~~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~---~~~~~~--~~~~d~~~~s~~K~~--  220 (397)
T TIGR01976       155 --PRTRLVAVTAASNTLGSIVD----LAAITELVHAAGALVVVDAVHY-APH---GLIDVQ--ATGADFLTCSAYKFF--  220 (397)
T ss_pred             --CCceEEEEeCCCCCCCccCC----HHHHHHHHHHcCCEEEEehhhh-ccc---cCCCHH--HcCCCEEEEechhhc--
Confidence              35678888877788887776    9999999999999999999985 321   122222  2345666  567987  


Q ss_pred             ccceEEEEeCHHHHHhhcccccccC----------CCCcHHHHHHHHHHHHhhchhh-----------------HHHHHH
Q 011777          326 GLPLGAVVTTPEIANVMAQKIQFNT----------FGGNPVCSAGGLAVLRVIDKER-----------------RQAHCA  378 (477)
Q Consensus       326 G~pig~v~~~~~~~~~~~~~~~~~t----------~~~~~~~~aaa~a~l~~l~~~~-----------------~~~~~~  378 (477)
                      |.++|++++++++++.+........          .+.|....++..++++.+.+.+                 ..++..
T Consensus       221 g~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  300 (397)
T TIGR01976       221 GPHMGILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYEN  300 (397)
T ss_pred             CCceEEEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHH
Confidence            4579999999998877764321111          1233445555556666553321                 123333


Q ss_pred             HHHHHHHHHHHHHHHhCCCceee-----eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC---------
Q 011777          379 DVGSHLLGRLRTLQERHDIIGDV-----RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG---------  444 (477)
Q Consensus       379 ~~~~~l~~~L~~l~~~~~~~~~v-----~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------  444 (477)
                      ++.+++++.|++    .+.+...     ...+.++.+.+..         ....++.+.|.++||.+..+.         
T Consensus       301 ~l~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~  367 (397)
T TIGR01976       301 RLAEYLLVGLSD----LPGVTLYGVARLAARVPTVSFTVHG---------LPPQRVVRRLADQGIDAWAGHFYAVRLLRR  367 (397)
T ss_pred             HHHHHHHHHHhc----CCCEEEeCCCCccCCCceEEEEeCC---------cCHHHHHHHHHHCCeEEEeCccchHHHHHH
Confidence            444444444443    3312111     1134455544421         113568889999999998651         


Q ss_pred             ----CCCCEEEEeCCCCCcHHHHHHHHHHH
Q 011777          445 ----LHGNVFRIKPPMCFTKDDADFLVDAL  470 (477)
Q Consensus       445 ----~~~~~iRi~p~~~~t~e~i~~~l~~l  470 (477)
                          ..+++||++++..+|++|++++++.|
T Consensus       368 ~~~~~~~~~iRis~~~~~t~~di~~l~~~l  397 (397)
T TIGR01976       368 LGLNDEGGVVRVGLAHYNTAEEVDRLLEAL  397 (397)
T ss_pred             hCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence                12468999999999999999999864

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.89  E-value=5.8e-21  Score=191.37  Aligned_cols=317  Identities=16%  Similarity=0.142  Sum_probs=201.2

Q ss_pred             CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCC-CCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCc
Q 011777          113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGN-LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAY  191 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~-~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~y  191 (477)
                      .+++|.+|+.+.+..  +.. ....+...++++.++++++.+ .+.+++++||++|+..+++...  .+++.|++...+|
T Consensus        10 ~~~~v~~a~~~~~~~--~~~-~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~--~~g~~vl~~~~~~   84 (356)
T cd06451          10 VPPRVLKAMNRPMLG--HRS-PEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLL--EPGDKVLVGVNGV   84 (356)
T ss_pred             CCHHHHHHhCCCccC--CCC-HHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhC--CCCCEEEEecCCc
Confidence            467888888543321  111 112344678999999998763 3468899999999999997553  3567788887776


Q ss_pred             cCCcc-cccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCC
Q 011777          192 HGGSS-GTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELA  270 (477)
Q Consensus       192 hG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~  270 (477)
                      ++... ......+.          .+..++....    ...|    .+++++.++   ++++++|++...+++.|.+.+ 
T Consensus        85 ~~~~~~~~~~~~g~----------~~~~v~~~~~----~~~~----~~~l~~~i~---~~~~~~v~i~~~~~~~G~~~~-  142 (356)
T cd06451          85 FGDRWADMAERYGA----------DVDVVEKPWG----EAVS----PEEIAEALE---QHDIKAVTLTHNETSTGVLNP-  142 (356)
T ss_pred             hhHHHHHHHHHhCC----------CeEEeecCCC----CCCC----HHHHHHHHh---ccCCCEEEEeccCCCcccccC-
Confidence            65311 11111111          1222221110    1111    477888776   235677777776777887776 


Q ss_pred             chhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccCccceEEEEeCHHHHHhhcc--cc
Q 011777          271 PGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGLPLGAVVTTPEIANVMAQ--KI  346 (477)
Q Consensus       271 ~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pig~v~~~~~~~~~~~~--~~  346 (477)
                         +++|.++|+++|+++|+|++|. +|.   ..+....++  +|+++  .+|.++++.++|+++.++++++.+..  ..
T Consensus       143 ---~~~i~~~a~~~~~~li~D~~~~-~g~---~~~~~~~~~--~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~  213 (356)
T cd06451         143 ---LEGIGALAKKHDALLIVDAVSS-LGG---EPFRMDEWG--VDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKP  213 (356)
T ss_pred             ---HHHHHHHHHhcCCEEEEeeehh-ccC---ccccccccC--ccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCC
Confidence               8999999999999999999986 542   222223233  45554  57999987789999999998877652  10


Q ss_pred             --c---------------ccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc-c
Q 011777          347 --Q---------------FNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGR-G  405 (477)
Q Consensus       347 --~---------------~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-g  405 (477)
                        .               ....+.++..+.++.++++.+..   +...++.+++.+++++.|.++  .........+. +
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~  291 (356)
T cd06451         214 KGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEAL--GLKLLAKPELRSP  291 (356)
T ss_pred             CceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--CCeeccCcccCCC
Confidence              0               11123345556677778877654   345666777777777777664  22222211122 2


Q ss_pred             eeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccCC--CCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          406 LMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGGL--HGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       406 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      .+.++.+..        ......+.+.|.++ ||.+.++..  .+++||++++..+|++|+++++++|+++++
T Consensus       292 ~~~~~~~~~--------~~~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~~  356 (356)
T cd06451         292 TVTAVLVPE--------GVDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEALK  356 (356)
T ss_pred             ceEEEECCC--------CCCHHHHHHHHHHhCCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence            233333311        11245788999998 999987632  347999999999999999999999998764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.89  E-value=9.6e-22  Score=196.39  Aligned_cols=288  Identities=17%  Similarity=0.212  Sum_probs=186.6

Q ss_pred             cccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCC
Q 011777          133 TIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP  212 (477)
Q Consensus       133 ~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  212 (477)
                      ..|+.+...+|+++++++++.+.++|++++|++|++..+++.... .|++.|++.+++|..+...+...           
T Consensus        52 ~~Yp~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~~-~g~~~vli~~P~y~~y~~~~~~~-----------  119 (351)
T PRK01688         52 NRYPECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFCE-PGKDAILYCPPTYGMYSVSAETI-----------  119 (351)
T ss_pred             ccCCCCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcC-CCCCEEEEcCCCHHHHHHHHHHc-----------
Confidence            346666678999999999988888999999999999999886532 23478999999997654332222           


Q ss_pred             CCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCee-EEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777          213 QGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA-GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD  291 (477)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a-~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  291 (477)
                        |...+.+|..  ..+..|    .+++++.+.     +++ .++++| +|++| ...+.+.+++|.+.|++ ++++|+|
T Consensus       120 --G~~~~~v~~~--~~~~~d----~~~l~~~~~-----~~~lv~l~nP-nNPTG-~~~~~~~l~~l~~~~~~-~~~vivD  183 (351)
T PRK01688        120 --GVEIRTVPTL--DNWQLD----LPAIADNLD-----GVKVVYVCSP-NNPTG-NLINPQDLRTLLELTRG-KAIVVAD  183 (351)
T ss_pred             --CCEEEEeecC--CCCCCC----HHHHHHhcc-----CCcEEEEeCC-CCCCC-CCCCHHHHHHHHHhCCC-CcEEEEE
Confidence              2222222211  112212    355655542     334 455555 55566 45577888888888876 6889999


Q ss_pred             CcccCccCCCCCCccccccCCCccee---eeccccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHh
Q 011777          292 EVQTGFGRTGSHYWGFETQGVIPDIV---TMAKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRV  367 (477)
Q Consensus       292 Ev~~gfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~  367 (477)
                      |+|..|.... ...  ......++++   ||||.+| .|+|+||+++++++++.+....  ..|+.|.+++.++.++|+.
T Consensus       184 Eay~~f~~~~-s~~--~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~~~i~~l~~~~--~~~~v~~~~~~~a~~~L~~  258 (351)
T PRK01688        184 EAYIEFCPQA-SLA--GWLAEYPHLVILRTLSKAFALAGLRCGFTLANEEVINLLLKVI--APYPLSTPVADIAAQALSP  258 (351)
T ss_pred             CchhhcCCCC-ChH--HHHhhCCCEEEEecchHhhcCHHHHHhHHhCCHHHHHHHHhcc--CCCCCCHHHHHHHHHHHhc
Confidence            9999885221 111  1112223433   7999999 6999999999999998887543  3466777777777777753


Q ss_pred             hchh---hHHHHHHHHHHHHHHHHHHHHHhCCCc-eeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeecc
Q 011777          368 IDKE---RRQAHCADVGSHLLGRLRTLQERHDII-GDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG  443 (477)
Q Consensus       368 l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~-~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~  443 (477)
                      ...+   +..+.+.+..+++.+.|+    +.+.+ ...+..+.|+++.+.           ...++.+.|+++||+++++
T Consensus       259 ~~~~~~~~~~~~~~~~r~~l~~~L~----~~~~~~~~~ps~~nfi~~~~~-----------~~~~l~~~L~~~gi~vr~~  323 (351)
T PRK01688        259 QGIAAMRERVAEINANRQWLIAALK----EIPCVEQVFDSETNYILARFT-----------ASSAVFKSLWDQGIILRDQ  323 (351)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHH----hCCCCCeECCCCCcEEEEEcC-----------CHHHHHHHHHHCCeEEEEC
Confidence            1111   222333333444444443    34333 233456778787662           1357888999999999876


Q ss_pred             CCC---CCEEEEeCCCCCcHHHHHHHHHHHH
Q 011777          444 GLH---GNVFRIKPPMCFTKDDADFLVDALD  471 (477)
Q Consensus       444 ~~~---~~~iRi~p~~~~t~e~i~~~l~~l~  471 (477)
                      +.+   .+++||+..   +++|++.++++|+
T Consensus       324 ~~~~~~~~~iRis~~---~~~e~~~l~~al~  351 (351)
T PRK01688        324 NKQPGLSNCLRITIG---TREECQRVIDALR  351 (351)
T ss_pred             CCcCCCCCeEEEeCC---CHHHHHHHHHhhC
Confidence            422   478999644   7899999998873

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.89  E-value=6.7e-21  Score=189.48  Aligned_cols=322  Identities=21%  Similarity=0.136  Sum_probs=199.5

Q ss_pred             eecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhcc
Q 011777          100 DAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLST  179 (477)
Q Consensus       100 D~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~  179 (477)
                      ||.+..   ++| ++|++.+++.+.+...   ...+..+...++++.++++++  .+.+++++||++|+..+++...  .
T Consensus         1 ~~~~~~---~~~-~~~~v~~a~~~~~~~~---~~~~~~~~~~~l~~~~a~~~g--~~~~~~~~~gt~a~~~~~~~l~--~   69 (338)
T cd06502           1 DFRSDT---VTG-PTPEMLEAMAAANVGD---DVYGEDPTTAKLEARAAELFG--KEAALFVPSGTAANQLALAAHT--Q   69 (338)
T ss_pred             Cccccc---CCC-CCHHHHHHHHhcccCC---cccCCCHHHHHHHHHHHHHhC--CCeEEEecCchHHHHHHHHHhc--C
Confidence            455443   466 7899999998765321   122356778899999999986  4678899999999999988653  3


Q ss_pred             CCceEEEEccCccCCcccc--cccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC---CCCeeE
Q 011777          180 GNLGMIALRNAYHGGSSGT--IGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT---SGKVAG  254 (477)
Q Consensus       180 ~~~~ii~~~~~yhG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~---~~~~a~  254 (477)
                      +++.|++..++|.......  ....            |...+.++...   +..|    .++++++++...   ..++++
T Consensus        70 ~gd~v~~~~~~~~~~~~~~~~~~~~------------g~~~~~v~~~~---~~~d----~~~l~~~i~~~~~~~~~~~~~  130 (338)
T cd06502          70 PGGSVICHETAHIYTDEAGAPEFLS------------GVKLLPVPGEN---GKLT----PEDLEAAIRPRDDIHFPPPSL  130 (338)
T ss_pred             CCCeEEEecCcceeeecCCcHHHHc------------CceEEeecCCC---CcCC----HHHHHHHhhccCCCcCCcceE
Confidence            5566776655543221110  0011            22222222111   1112    477888775211   125677


Q ss_pred             EEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCcc--CCCCCCccccccCCCccee--eecccccCccceE
Q 011777          255 FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG--RTGSHYWGFETQGVIPDIV--TMAKGIGNGLPLG  330 (477)
Q Consensus       255 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfg--r~G~~~~~~~~~gv~pDiv--t~sK~lg~G~pig  330 (477)
                      |+++..+++|| +. +.+.+++|.++|++||+++|+||+|..+.  ..| .  ........+|++  +++|.++.  |.|
T Consensus       131 v~l~~p~n~g~-~~-~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~-~--~~~~~~~~~d~~~~s~sK~~~~--~~g  203 (338)
T cd06502         131 VSLENTTEGGT-VY-PLDELKAISALAKENGLPLHLDGARLANAAAALG-V--ALKTYKSGVDSVSFCLSKGGGA--PVG  203 (338)
T ss_pred             EEEEeecCCcc-cc-CHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcC-C--CHHHHHhcCCEEEEeccccCCC--ccc
Confidence            77776566654 33 77889999999999999999999875221  122 1  112122234544  68899974  225


Q ss_pred             E-EEeCHHHHHhhcccc--cccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccee
Q 011777          331 A-VVTTPEIANVMAQKI--QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLM  407 (477)
Q Consensus       331 ~-v~~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~  407 (477)
                      + +++++++++.+....  ++++++.+++.++++.++|+.-...+..+++.++.+++.+.|+++    +.. .....+.+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~-~~~~~~~~  278 (338)
T cd06502         204 AVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEEL----GGL-ESEVQTNI  278 (338)
T ss_pred             eEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc----CCC-cccccCCe
Confidence            4 567888888776532  235566677888888887764222344566777777777777664    221 12234445


Q ss_pred             EEEEEeeCCCCCCccHHHHHHHHHHHH---HcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777          408 VGMELVTDRKEKTPAKAETAVLFEKLR---ELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDY  472 (477)
Q Consensus       408 ~~i~~~~~~~~~~~~~~~~~~~~~~l~---~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~  472 (477)
                      +.+.+..       .......+.+.+.   ++|+++.+.+  .+++||+|++.++++|++++++++++
T Consensus       279 ~~v~~~~-------~~~~~~~l~~~l~~~~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~  337 (338)
T cd06502         279 VLLDPVE-------ANAVFVELSKEAIERRGEGVLFYAWG--EGGVRFVTHWDTTEEDVDELLSALKA  337 (338)
T ss_pred             EEEecCC-------ccHHHHHHHHHHHHhhhCCEEEEecC--CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence            5554421       1112333444443   7899998764  38999999999999999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK02948 cysteine desulfurase; Provisional

Probab=99.89  E-value=6.5e-21  Score=192.82  Aligned_cols=330  Identities=19%  Similarity=0.166  Sum_probs=203.7

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhccc-cccc-----cCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH-ATTI-----YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANEL  170 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~-~~~~-----~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~  170 (477)
                      .|||..+.      |..++.+++++.+.+..... ....     .......++++.++++++.+.+.|+|++|+++++..
T Consensus         2 ~yld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~   75 (381)
T PRK02948          2 IYLDYAAT------TPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYL   75 (381)
T ss_pred             EeccCCCC------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHH
Confidence            47886543      34689999999988864311 1111     112446788899999998777899999999999999


Q ss_pred             HHHHHHhc--cCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          171 AMLMARLS--TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       171 Al~~ar~~--~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      +++.+...  .+++.|++....|+...........          .|......+.......  |    .+++++.++   
T Consensus        76 ~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~----------~g~~v~~v~~~~~~~~--d----~~~l~~~l~---  136 (381)
T PRK02948         76 AIQSLLNALPQNKKHIITTPMEHASIHSYFQSLES----------QGYTVTEIPVDKSGLI--R----LVDLERAIT---  136 (381)
T ss_pred             HHHHHHHhccCCCCEEEECCcccHHHHHHHHHHHh----------CCCEEEEEeeCCCCCC--C----HHHHHHhcC---
Confidence            98876431  2344555544333322222111100          1222222221111111  1    477777765   


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccCc
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGNG  326 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G  326 (477)
                       +++.+|+++.+++++|.+.+    +++|.++|+++|+++|+|++|+ ||..+   +..+.++  .|++  +++|.+|. 
T Consensus       137 -~~~~lv~~~~~~n~tG~~~~----~~~I~~l~~~~~~~vivD~~~~-~g~~~---~~~~~~~--~d~~~~s~~K~~gp-  204 (381)
T PRK02948        137 -PDTVLASIQHANSEIGTIQP----IAEIGALLKKYNVLFHSDCVQT-FGKLP---IDVFEMG--IDSLSVSAHKIYGP-  204 (381)
T ss_pred             -CCCEEEEEECCcCCcEeehh----HHHHHHHHHHcCCEEEEEChhh-ccccc---cCcccCC--CCEEEecHHhcCCC-
Confidence             35678888888888998887    8999999999999999998876 65432   2223333  4555  57797762 


Q ss_pred             cceEEEEeCHHHH-Hhhcc----cccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCce
Q 011777          327 LPLGAVVTTPEIA-NVMAQ----KIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIG  399 (477)
Q Consensus       327 ~pig~v~~~~~~~-~~~~~----~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~  399 (477)
                      ..+|++++++++. ..+..    ......++.|.++++++.++++.+.+  ++..++++++.++++++|+++.  +. +.
T Consensus       205 ~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~-v~  281 (381)
T PRK02948        205 KGVGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTLP--LP-IE  281 (381)
T ss_pred             CcEEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CC-EE
Confidence            2379988887751 11110    00112345678888888888876532  3455666777777777766541  11 11


Q ss_pred             eeec-----cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC---------------------CCCEEEEe
Q 011777          400 DVRG-----RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL---------------------HGNVFRIK  453 (477)
Q Consensus       400 ~v~g-----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------~~~~iRi~  453 (477)
                       ..+     ...++.+.+..         ....++...|.++||.+..+..                     ..+++|++
T Consensus       282 -~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis  351 (381)
T PRK02948        282 -VEGHSTSCLPHIIGVTIKG---------IEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFS  351 (381)
T ss_pred             -EeCCCccCcCCEEEEEeCC---------CCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEE
Confidence             111     11122232210         0134566778889999986531                     13689999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHhh
Q 011777          454 PPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       454 p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +...+|++|++++++.|++++++
T Consensus       352 ~~~~~t~~di~~l~~~l~~~~~~  374 (381)
T PRK02948        352 FGQQTTKDQIDTTIHALETIGNQ  374 (381)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988764

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.88  E-value=1.6e-20  Score=188.63  Aligned_cols=319  Identities=16%  Similarity=0.127  Sum_probs=201.8

Q ss_pred             CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCC--CEEEEeCChHHHHHHHHHHHHhccCCceEEEEccC
Q 011777          113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNL--KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNA  190 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~--~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~  190 (477)
                      .+++|.+++.++.   .+.. ........++++.|+++++...  +.|++++|||+|++.++....  .+++++|+..++
T Consensus        14 ~~~~v~~~~~~~~---~~~~-~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~--~~~~~vlv~~~~   87 (363)
T TIGR02326        14 TSRTVKEAMLFDW---CTWD-SDYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAV--PKDGKLLVVING   87 (363)
T ss_pred             CCHHHHHHhCCCC---CCCC-hHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcC--CCCCeEEEEeCC
Confidence            3566666654433   1211 1234456788899999987653  379999999999999987553  255677777777


Q ss_pred             ccCCcccc-cccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeC
Q 011777          191 YHGGSSGT-IGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVEL  269 (477)
Q Consensus       191 yhG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~  269 (477)
                      +|+..... ....            |+....++.......+      .++++++++..  .++..+.+..+.+.+|.+.+
T Consensus        88 ~~~~~~~~~a~~~------------g~~~~~v~~~~~~~~d------~~~l~~~l~~~--~~~~~v~~~~~~~~tG~~~~  147 (363)
T TIGR02326        88 AYGARIVQIAEYL------------GIPHHVVDTGEVEPPD------VVEVEAILAAD--PAITHIALVHCETTTGILNP  147 (363)
T ss_pred             hhhHHHHHHHHHc------------CCceEEEeCCCCCCCC------HHHHHHHHhhC--CCccEEEEEeecCCccccCc
Confidence            77653111 1111            2222222221111122      57888887632  23455555556677888877


Q ss_pred             CchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccCccceEEEEeCHHHHHhhcccc-
Q 011777          270 APGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGNGLPLGAVVTTPEIANVMAQKI-  346 (477)
Q Consensus       270 ~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G~pig~v~~~~~~~~~~~~~~-  346 (477)
                          +++|.++|++||+++|+|++|+ +|.   ..+.+..+  .+|++  +++|+++++.++|+++++++.++.+.... 
T Consensus       148 ----i~~I~~l~~~~g~~livD~~~~-~g~---~~~~~~~~--~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~  217 (363)
T TIGR02326       148 ----IEAVAKLAHRHGKVTIVDAMSS-FGG---IPIDIAEL--HIDYLISSANKCIQGVPGFGFVIARQAELAACKGNAR  217 (363)
T ss_pred             ----HHHHHHHHHHcCCEEEEEcccc-ccC---cccchhhc--CccEEEecCccccccCCcceEEEECHHHHHHhhcCCC
Confidence                8999999999999999999986 543   22333333  45665  46799987667899999998876543210 


Q ss_pred             -----------------cccCCCCcHHHHHHHHHHHHhhchh----hHHHHHHHHHHHHHHHHHHHHHhCCCceee-ecc
Q 011777          347 -----------------QFNTFGGNPVCSAGGLAVLRVIDKE----RRQAHCADVGSHLLGRLRTLQERHDIIGDV-RGR  404 (477)
Q Consensus       347 -----------------~~~t~~~~~~~~aaa~a~l~~l~~~----~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g~  404 (477)
                                       ....|..+...+.+..++++.+.++    +..+++.++.+++++.|+++  ........ ...
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~  295 (363)
T TIGR02326       218 SLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL--GFEPLLDDEIQS  295 (363)
T ss_pred             ceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc--CCeeccCcccCC
Confidence                             0123456777778877888776443    34566677777777777654  12221111 012


Q ss_pred             ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC-CCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          405 GLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH-GNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       405 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      +.+.++.+...     + ......+.+.|.++||.+.++... .+.||+++...++.+|+++++++|++++.
T Consensus       296 ~~~~~~~~~~~-----~-~~~~~~v~~~L~~~gi~v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~l~  361 (363)
T TIGR02326       296 PIITSFYSPED-----P-DYRFADFYQRLKEQGFVIYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKAMY  361 (363)
T ss_pred             ceEEEEECCCC-----C-CCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence            33445554211     0 012456888899999999987533 47899998677899999999999998864

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.88  E-value=2.2e-21  Score=199.74  Aligned_cols=345  Identities=14%  Similarity=0.099  Sum_probs=190.6

Q ss_pred             EEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhh-CC-----CCCCEEEEeCChHHHHHHH
Q 011777           98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASK-MP-----GNLKVVYFVNSGTEANELA  171 (477)
Q Consensus        98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~-~~-----~~~~~v~~~~sGseA~~~A  171 (477)
                      .+|+..|..    |...|+.+..+.+.+....|+...+..+.++++++.+.+. ..     .+.++|++|+|+++|+..+
T Consensus       102 ~i~l~~g~p----~~~~~~~v~e~~~~~~~~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~  177 (527)
T PRK09275        102 AVSYVRDQL----GFDADEFVYELVDGIIGDNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYI  177 (527)
T ss_pred             HHhhcCCCC----CCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHH
Confidence            345444432    4444444444556554322322333345566666544332 11     1124899999999999998


Q ss_pred             HHHHH---hccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          172 MLMAR---LSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       172 l~~ar---~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      +....   ...+++.|++.+++|..+.........           +...++++......|..|    .++++++++   
T Consensus       178 ~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~-----------~~~~v~v~~~~~~~f~~d----~~~l~~~~~---  239 (527)
T PRK09275        178 FDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRY-----------DLEVVHINADEENEWQYP----DSELEKLRD---  239 (527)
T ss_pred             HHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCC-----------CeEEEEeecCcccCCCCC----HHHHHhhcC---
Confidence            87521   234678999999999887544322211           222333221111112222    366777654   


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHH--hCcEEEEcCcccCccCCCCCCccc-cc-cCCCcceeeeccccc
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK--AGGVCIADEVQTGFGRTGSHYWGF-ET-QGVIPDIVTMAKGIG  324 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~--~gillI~DEv~~gfgr~G~~~~~~-~~-~gv~pDivt~sK~lg  324 (477)
                       .++++|++...+|++| .+.+++.+++|.++|++  +|++||+||+|..|...   +..+ .. .+...-+-+|||.++
T Consensus       240 -~~tkai~l~nP~NPTG-~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~---~~s~~~~~~~~~I~v~SfSK~f~  314 (527)
T PRK09275        240 -PSIKALFLVNPSNPPS-VAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDD---FRSLFAVLPYNTILVYSFSKYFG  314 (527)
T ss_pred             -CCCCEEEEeCCcCCcC-CCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhccc---ccCHHHhCCCCEEEEeehhhhcc
Confidence             3555555443355566 56689999999999965  59999999999987531   1111 11 112223447999998


Q ss_pred             -CccceEEEEeCHH-----HHHhh--------------------------------cccccccCCCCcHHHHHH-HH---
Q 011777          325 -NGLPLGAVVTTPE-----IANVM--------------------------------AQKIQFNTFGGNPVCSAG-GL---  362 (477)
Q Consensus       325 -~G~pig~v~~~~~-----~~~~~--------------------------------~~~~~~~t~~~~~~~~aa-a~---  362 (477)
                       .|||+||++++++     +++.+                                +......|.+.+.+.|.+ ++   
T Consensus       315 mtG~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~  394 (527)
T PRK09275        315 ATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSL  394 (527)
T ss_pred             CcHhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence             5999999999876     33322                                122233456666666665 32   


Q ss_pred             -HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCc-eeeeccc-eeEEEEEeeCC---CCCCcc-----HHHHHHHHH
Q 011777          363 -AVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDII-GDVRGRG-LMVGMELVTDR---KEKTPA-----KAETAVLFE  431 (477)
Q Consensus       363 -a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~-~~v~g~g-~~~~i~~~~~~---~~~~~~-----~~~~~~~~~  431 (477)
                       +.++.  .+++.+.   +.+.++++...+.+..+.. ...++.| .++++++..-.   ..+...     .....+++.
T Consensus       395 ~all~~--~~~~~~~---~~~~~~~Rr~~l~~~Lg~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~  469 (527)
T PRK09275        395 FALLDE--EDAYKKA---MKDIIRRRYKALYEGLGLPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLF  469 (527)
T ss_pred             HHHHhC--chHHHHH---HHHHHHHHHHHHHHHcCCCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHH
Confidence             22331  1233332   3333333333333333321 1123444 55566653210   000000     001234444


Q ss_pred             HH-HHcCceeeccCCCC---CEEEEeCCCC-CcHHHHHHHHHHHHHHHhh
Q 011777          432 KL-RELGVLVGKGGLHG---NVFRIKPPMC-FTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       432 ~l-~~~Gv~v~~~~~~~---~~iRi~p~~~-~t~e~i~~~l~~l~~~l~~  476 (477)
                      .| .+.||.+.||..++   +++||+  ++ .+++++.++.++|.+++.+
T Consensus       470 ~Ll~e~gV~v~PG~~Fg~~~~~vRis--~a~~~~~~~~~~~~rl~~~l~~  517 (527)
T PRK09275        470 RLAEETGVVLLPGGGFGGPEWSVRVS--LANLNEEDYAKIGKAIRKLLDE  517 (527)
T ss_pred             HHHhcCCEEEeCchhhCCCCCeEEEE--EecCCHHHHHHHHHHHHHHHHH
Confidence            44 56699999986554   589996  45 5889999999999988754

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.88  E-value=1.5e-20  Score=177.73  Aligned_cols=316  Identities=20%  Similarity=0.203  Sum_probs=221.4

Q ss_pred             CCHHHHHHHHHHHhhcccccc-----ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH-HHHhccCCceEEE
Q 011777          113 CHPDVLNAIFEQSKLLQHATT-----IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAML-MARLSTGNLGMIA  186 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~-----~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~-~ar~~~~~~~ii~  186 (477)
                      .||+|.+|+.+.+++......     .+.+....+|.++|+++...  +..++.+|.--||+.-+- +++...  +-+|.
T Consensus       186 ~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK--~aALlFsSCfVANDstLftLak~lp--gcei~  261 (570)
T KOG1360|consen  186 RHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQK--EAALLFSSCFVANDSTLFTLAKKLP--GCEIF  261 (570)
T ss_pred             CChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcC--cceeeeeeeeeccchHHHHHHHHCC--CcEEe
Confidence            499999999999998532211     24566778999999999854  456666777777877665 444432  34555


Q ss_pred             EccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCe
Q 011777          187 LRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGA  266 (477)
Q Consensus       187 ~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~  266 (477)
                      -+.+-|......+..++.+.+.                    |..++   +++|+++++...+...+.|-+|.+.++.|.
T Consensus       262 SD~gNHASMI~GIrns~v~K~I--------------------FrHND---~~hL~~lL~~~~~svPKivAFEtVhSM~Ga  318 (570)
T KOG1360|consen  262 SDEGNHASMIQGIRNSRVPKHI--------------------FRHND---LDHLEQLLQSSPKSVPKIVAFETVHSMDGA  318 (570)
T ss_pred             ccccchHHHHHHhhhcCCccee--------------------eccCC---HHHHHHHHHhCCCCCCceEEEeeeeccCCC
Confidence            6667777655544444322211                    11111   588999998666677889999999999999


Q ss_pred             eeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cccCC--Cccee--eecccccC-ccceEEEEeCHHHHH
Q 011777          267 VELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQGV--IPDIV--TMAKGIGN-GLPLGAVVTTPEIAN  340 (477)
Q Consensus       267 ~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~gv--~pDiv--t~sK~lg~-G~pig~v~~~~~~~~  340 (477)
                      +.|    |++|.+++++||++-.+|||+. .|..|.+.-+. +..|+  +.||+  |++|+||+ |   ||+.++..+++
T Consensus       319 vcp----leelcDvah~yGAiTFlDEVHA-VGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVG---GYIAat~~LvD  390 (570)
T KOG1360|consen  319 VCP----LEELCDVAHKYGAITFLDEVHA-VGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVG---GYIAATRKLVD  390 (570)
T ss_pred             cCC----HHHHHHHHHHhCceeeeehhhh-hccccCCCCCccccCCcchhhhhcccchhhhccccc---ceehhhhhHHH
Confidence            999    9999999999999999999987 55444222233 55666  46777  69999996 7   89999999999


Q ss_pred             hhcccccc--cCCCCcHHHHHHHHHHHHhhchh---hHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeC
Q 011777          341 VMAQKIQF--NTFGGNPVCSAGGLAVLRVIDKE---RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTD  415 (477)
Q Consensus       341 ~~~~~~~~--~t~~~~~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~  415 (477)
                      .++....+  .|-+.+|..++.|+++++++..+   .+.+.-+++..++++.|.++  ..|++.   ....++-+.+.  
T Consensus       391 miRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~--GiPVi~---~pSHIiPv~vg--  463 (570)
T KOG1360|consen  391 MIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL--GIPVIP---NPSHIIPVRVG--  463 (570)
T ss_pred             HHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc--CCcccC---CCcceeeeecc--
Confidence            98875433  45567899999999999998754   23444444555666665554  233332   23445555442  


Q ss_pred             CCCCCccHHHHHHHHHHHH-HcCceeecc-----CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          416 RKEKTPAKAETAVLFEKLR-ELGVLVGKG-----GLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       416 ~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~-----~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                            +.....++.+.|+ ++||++..-     ......+||.|.-.+|++.++.+++.|..++++
T Consensus       464 ------da~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~  524 (570)
T KOG1360|consen  464 ------DAALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNE  524 (570)
T ss_pred             ------CHHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHHH
Confidence                  2334556666665 568887432     122467999999999999999999999998865

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.88  E-value=1.4e-20  Score=189.48  Aligned_cols=304  Identities=14%  Similarity=0.152  Sum_probs=183.7

Q ss_pred             ChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCe
Q 011777          137 HHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEI  216 (477)
Q Consensus       137 ~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~  216 (477)
                      ++...++.+.++++++.  +.+.+++||++++..++....  .+++.|++..+.++....+ ....            |.
T Consensus        50 ~~~~~~~~e~lA~~~g~--~~~~i~~g~~~a~~~~~~~l~--~~gd~Vl~~~~~h~s~~~~-~~~~------------g~  112 (370)
T TIGR02539        50 KPPIHDFLEDLAEFLGM--DEARVTHGAREGKFAVMHALC--KEGDWVVLDGLAHYTSYVA-AERA------------GL  112 (370)
T ss_pred             chHHHHHHHHHHHHhCC--CceEEECChHHHHHHHHHHhh--CCCCEEEECCcccHHHHHH-HHHc------------CC
Confidence            34667888889999865  567789999999999887653  3556677766665544322 1211            22


Q ss_pred             eeecCCCCcCCCCCCCHHHHHHHHHHHHhcc---CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCc
Q 011777          217 HHVVNPDPYHGSFGSDAARYAQDLQDHIDFG---TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEV  293 (477)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~---~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv  293 (477)
                      ....+|......+..|    ++++++.++..   ...++.+|+++.++++.|.+.+    +++|.++|++||+++|+||+
T Consensus       113 ~~~~~~~~~~~~~~~d----~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~----l~~i~~la~~~~~~livDea  184 (370)
T TIGR02539       113 NVKEVPHTGHPEYKVD----PEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD----AGKVAKVCREKGVPLLLNCA  184 (370)
T ss_pred             EEEEEecCCcccCCcC----HHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC----HHHHHHHHHHcCCeEEEECc
Confidence            2222221100011112    57788777521   1125667777777788887777    89999999999999999999


Q ss_pred             ccCccCCCCCCccccccCCCccee--eecccccCccceEEEEeCHHHHHhhcccccccCC--------CCcHHHHHHHHH
Q 011777          294 QTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTF--------GGNPVCSAGGLA  363 (477)
Q Consensus       294 ~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~--------~~~~~~~aaa~a  363 (477)
                      |. +|..+     .+..+..+|++  +++|++++|.|+|++++++++++.+........+        .....++.++.+
T Consensus       185 ~~-~g~~~-----~~~~~~~~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (370)
T TIGR02539       185 YT-VGRMP-----VSAKEIGADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMA  258 (370)
T ss_pred             cc-cCCcC-----CCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHH
Confidence            97 33222     11111234544  7899999877899999999999988754322111        111225555566


Q ss_pred             HHHhhchh-hHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCce-ee
Q 011777          364 VLRVIDKE-RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVL-VG  441 (477)
Q Consensus       364 ~l~~l~~~-~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~-v~  441 (477)
                      +++...+. +...+..++.++++++|+++.  +..+........++.+++.........+......+.+.|+++||+ +.
T Consensus       259 al~~~~~~l~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir  336 (370)
T TIGR02539       259 SFPHVVERVKRWDEEVKKTRWFVAELEDIG--FIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIR  336 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--cEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCcccc
Confidence            66542211 112222333457777776641  111111133455665554110000000011235688999999997 66


Q ss_pred             ccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          442 KGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       442 ~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ++.  .+++|++. ..++++|+++++++|++++++
T Consensus       337 ~~~--~~~iRis~-~~~t~e~i~~l~~~L~~~~~~  368 (370)
T TIGR02539       337 SGQ--TKYFKLSV-YGLTKEQVEYVVDSFEEIVEE  368 (370)
T ss_pred             CCc--ceEEEEEe-cCCCHHHHHHHHHHHHHHHHh
Confidence            532  46899986 468999999999999998865

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.88  E-value=3.3e-20  Score=187.72  Aligned_cols=337  Identities=15%  Similarity=0.100  Sum_probs=202.0

Q ss_pred             ccCCCCCHHHHHHHHHHHhhcccc------ccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCC
Q 011777          108 VSCGHCHPDVLNAIFEQSKLLQHA------TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGN  181 (477)
Q Consensus       108 ~~lGh~~p~v~~Av~~~l~~~~~~------~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~  181 (477)
                      .-+|..++++++|+.+........      ......+...++.+.++++++.  +.++|++||++|+..+++...  .++
T Consensus        27 ~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~--~~~~~~~g~t~a~~~al~~l~--~~g  102 (387)
T PRK09331         27 QRGGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGM--DEARVTHGAREGKFAVMHSLC--KKG  102 (387)
T ss_pred             hcCCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhc--CCC
Confidence            346788999999999887542221      1122356689999999999965  578899999999999998653  356


Q ss_pred             ceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc---CCCCeeEEEec
Q 011777          182 LGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG---TSGKVAGFIAE  258 (477)
Q Consensus       182 ~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~---~~~~~a~vi~e  258 (477)
                      ++|++...++.+.... ....            |...+.++......+..|    .+++++.++..   ..+++++|+++
T Consensus       103 d~Vlv~~~~h~s~~~~-~~~~------------G~~~~~v~~~~~~~~~~d----~~~l~~~l~~~~~~~~~~~~lV~l~  165 (387)
T PRK09331        103 DYVVLDGLAHYTSYVA-AERA------------GLNVREVPKTGYPEYKIT----PEAYAEKIEEVKEETGKPPALALLT  165 (387)
T ss_pred             CEEEECCCchHHHHHH-HHHc------------CCEEEEEeCccCcCCCcC----HHHHHHHHHHhhhccCCCCEEEEEE
Confidence            6777766655544322 1111            222222221000011111    47788777632   12367888888


Q ss_pred             ccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHH
Q 011777          259 TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEI  338 (477)
Q Consensus       259 pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~  338 (477)
                      .++++.|.+.+    +++|.++|++||+++|+|++|+ +|..+   +....+++...+.+++|+++++.++|++++++++
T Consensus       166 ~~~~~tG~~~~----l~~I~~la~~~g~~livD~a~~-~g~~~---~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~~  237 (387)
T PRK09331        166 HVDGNYGNLAD----AKKVAKVAHEYGIPFLLNGAYT-VGRMP---VDGKKLGADFIVGSGHKSMAASAPSGVLATTEEY  237 (387)
T ss_pred             CCCCCCccccc----HHHHHHHHHHcCCEEEEECCcc-cCCcC---CCHHHcCCCEEEeeCcccccCCCCEEEEEECHHH
Confidence            88888887777    9999999999999999999997 43221   2223345544455678999987899999999998


Q ss_pred             HHhhccccccc------CCC--CcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEE
Q 011777          339 ANVMAQKIQFN------TFG--GNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVG  409 (477)
Q Consensus       339 ~~~~~~~~~~~------t~~--~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~  409 (477)
                      ++.+.......      .++  .++...++.+++++.+.+ .+..++..++.+++++.|.++. .+.....-.....++.
T Consensus       238 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~l~-g~~~~~~~~~~~~i~~  316 (387)
T PRK09331        238 ADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELEKIE-GFKQLGEKPRNHDLMK  316 (387)
T ss_pred             HhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CEEEeccCcCcCCeEE
Confidence            88765431100      011  122334444555554432 2233444556666766666541 0111110011233333


Q ss_pred             EEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          410 MELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       410 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ++...-.............+.+.|.++||...+.+ .+..+|+.. ..++++|+++++++|++++++
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~-~~~i~ri~~-~g~t~~di~~l~~aL~~i~~~  381 (387)
T PRK09331        317 FETPSFDEIAKKHKRRGFFLYEELKKRGIHGIKPG-ATKEFKLST-YGLTWEQVEYVADAFKEIAEK  381 (387)
T ss_pred             EeCCchhHHhhhccccchhHHHHHHHcCceEEccC-CceEEEEEe-ccCCHHHHHHHHHHHHHHHHh
Confidence            33210000000001123468889999999854332 245667764 448999999999999988764

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=8.8e-20  Score=183.31  Aligned_cols=332  Identities=20%  Similarity=0.157  Sum_probs=226.6

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc---c----cccccCChHHHHHHHHHHhhCCCC-CCEEEEeCChHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ---H----ATTIYLHHAIADFAEALASKMPGN-LKVVYFVNSGTEA  167 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~---~----~~~~~~~~~~~~l~~~La~~~~~~-~~~v~~~~sGseA  167 (477)
                      -.|+|..++.      ..+..|.+++.+......   |    ..........++.+++++++++.+ .+.|+||.+.|+|
T Consensus        23 ~vylD~aa~~------~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~a   96 (405)
T COG0520          23 LVYLDNAATS------QKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEA   96 (405)
T ss_pred             eEEecCcccc------cCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHH
Confidence            4689977644      468899999998876532   1    111122345678899999999877 4889999999999


Q ss_pred             HHHHHHHHH-hccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777          168 NELAMLMAR-LSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF  246 (477)
Q Consensus       168 ~~~Al~~ar-~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~  246 (477)
                      +........ ...+++.||+.+--+|....-...+...         .|.....+|....+.+.      .++++++++ 
T Consensus        97 ln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~---------~Ga~v~~i~~~~~g~~~------~~~~~~~i~-  160 (405)
T COG0520          97 LNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKR---------TGAKVRVIPLDDDGLLD------LDALEKLIT-  160 (405)
T ss_pred             HHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHh---------cCcEEEEEecCCCCCcC------HHHHHHhcC-
Confidence            998887542 1335588998888888765544333221         13322222221111222      577777665 


Q ss_pred             cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--cccc
Q 011777          247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIG  324 (477)
Q Consensus       247 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg  324 (477)
                         +++++|.+..+.+..|.+.|    +++|.++|+++|+++++|-+|+ ++     ...++...+..|.+.||  |++.
T Consensus       161 ---~~Tklvais~vSn~tG~~~p----v~~I~~la~~~ga~v~VDaaq~-~~-----h~~idv~~l~~Df~afsgHKwl~  227 (405)
T COG0520         161 ---PKTKLVALSHVSNVTGTVNP----VKEIAELAHEHGALVLVDAAQA-AG-----HLPIDVQELGCDFLAFSGHKWLL  227 (405)
T ss_pred             ---CCceEEEEECccccccccch----HHHHHHHHHHcCCEEEEECccc-cC-----ccCCCchhcCCCEEEEccccccc
Confidence               67899999999999999998    9999999999999999999997 32     33455566678999888  9888


Q ss_pred             CccceEEEEeCHHHHHhhcccccc------------cCC----------CCcHHHHHHHHHHHHhhch---hhHHHHHHH
Q 011777          325 NGLPLGAVVTTPEIANVMAQKIQF------------NTF----------GGNPVCSAGGLAVLRVIDK---ERRQAHCAD  379 (477)
Q Consensus       325 ~G~pig~v~~~~~~~~~~~~~~~~------------~t~----------~~~~~~~aaa~a~l~~l~~---~~~~~~~~~  379 (477)
                      |.-.+|.+.+++++.+.+.+...+            .++          ..|.....+..++++.+++   ++..++.++
T Consensus       228 gP~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~  307 (405)
T COG0520         228 GPTGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERE  307 (405)
T ss_pred             CCCceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHH
Confidence            767899999999999887442111            111          1234444444566666554   345566666


Q ss_pred             HHHHHHHHHHHHHHhCCCcee---e-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC---------
Q 011777          380 VGSHLLGRLRTLQERHDIIGD---V-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH---------  446 (477)
Q Consensus       380 ~~~~l~~~L~~l~~~~~~~~~---v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---------  446 (477)
                      +.+++.++|.++    +.+.-   . ..++.++.+.+...         ...++...|.++||.++.+...         
T Consensus       308 L~~~~~~~L~~~----~~v~i~g~~~~~r~~~vsF~v~~~---------~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~  374 (405)
T COG0520         308 LTEYLLEGLSEL----PGVEIYGPPDADRGGIVSFNVKGI---------HPHDVATLLDEKGIAVRAGHHCAQPLHRLLG  374 (405)
T ss_pred             HHHHHHHHHhcC----CCeEEecCCcccCceEEEEEeCCC---------CHHHHHHHHHhCCeEEEeccccccHHHHhcC
Confidence            666666666554    32211   1 12455666655321         2567899999999888776211         


Q ss_pred             -CCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          447 -GNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       447 -~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                       ...+|+++.+.+|+||||++++.|+++.+
T Consensus       375 ~~~~iR~S~~~YNt~edid~l~~aL~~~~~  404 (405)
T COG0520         375 VDATIRASLHLYNTEEDVDRLLEALKKALA  404 (405)
T ss_pred             CCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence             12399999999999999999999998753

>PRK08637 hypothetical protein; Provisional

Probab=99.88  E-value=5e-20  Score=186.59  Aligned_cols=305  Identities=13%  Similarity=0.073  Sum_probs=186.6

Q ss_pred             ChHHHHHHHHHHhhCC----CCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCC
Q 011777          137 HHAIADFAEALASKMP----GNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP  212 (477)
Q Consensus       137 ~~~~~~l~~~La~~~~----~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  212 (477)
                      .+.+..+++.+.+..+    .+.++|++|+|+++|+..++++...  +++.|++.+++|..+........          
T Consensus        47 ~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~--~gd~Vlv~~P~y~~~~~~~~~~~----------  114 (388)
T PRK08637         47 PELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVD--QGDTVLLPDHNWGNYKLTFNTRR----------  114 (388)
T ss_pred             HHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcC--CCCEEEEcCCCCccHHHHHHHhc----------
Confidence            3444555555544321    1235789999999999998886543  56789999999987754322111          


Q ss_pred             CCCeeeecCCCC-cCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHH-----hCc
Q 011777          213 QGEIHHVVNPDP-YHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK-----AGG  286 (477)
Q Consensus       213 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~-----~gi  286 (477)
                        |...+.+|.. ....++      ++++++.++....+...++++...+|++| ..++++.+++|.++|++     |++
T Consensus       115 --g~~vv~v~~~~~~~~~d------~~~l~~~~~~~~~~~~~~~~~~~P~NPTG-~~~s~~~~~~l~~~~~~~~~~~~~~  185 (388)
T PRK08637        115 --GAEIVTYPIFDEDGGFD------TDALKEALQAAYNKGKVIVILNFPNNPTG-YTPTEKEATAIVEAIKELADAGTKV  185 (388)
T ss_pred             --CCEEEEecccCCCCcCC------HHHHHHHHHhhccCCCEEEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHhcCCcE
Confidence              2222222210 011122      57777776522122334444443456666 66789999999999886     999


Q ss_pred             EEEEcCcccCccCCCCCCcc-c-cccCCCcc--ee---eeccccc-CccceEEEEeC------HHHHHhhccc----ccc
Q 011777          287 VCIADEVQTGFGRTGSHYWG-F-ETQGVIPD--IV---TMAKGIG-NGLPLGAVVTT------PEIANVMAQK----IQF  348 (477)
Q Consensus       287 llI~DEv~~gfgr~G~~~~~-~-~~~gv~pD--iv---t~sK~lg-~G~pig~v~~~------~~~~~~~~~~----~~~  348 (477)
                      +||+||+|.+|.+.+...-. + ...+....  ++   ++||.++ .|+|+||++.+      +++++.+...    ...
T Consensus       186 ~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~  265 (388)
T PRK08637        186 VAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRS  265 (388)
T ss_pred             EEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhc
Confidence            99999999988665521111 1 11122223  22   6899987 59999999854      6777766531    112


Q ss_pred             cCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH---HHHHHHhCC---Cceeee-ccceeEEEEEeeCCCCCCc
Q 011777          349 NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGR---LRTLQERHD---IIGDVR-GRGLMVGMELVTDRKEKTP  421 (477)
Q Consensus       349 ~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~---L~~l~~~~~---~~~~v~-g~g~~~~i~~~~~~~~~~~  421 (477)
                      ..++.|.+++.++.++|+   +..+.+++++....++++   +.+...+++   .+...+ ..|+++|+.+.        
T Consensus       266 ~~~~~s~~~q~a~~~~l~---~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~--------  334 (388)
T PRK08637        266 NISNGPHPSQSAVLRALN---SPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLK--------  334 (388)
T ss_pred             ccCCCCcHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccceEEEEecCC--------
Confidence            334678899999888875   334444444444334333   233333331   122223 34677787762        


Q ss_pred             cHHHHHHHHHHHH-HcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          422 AKAETAVLFEKLR-ELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       422 ~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                       .....++.+.|+ ++||.+...+  .+++||+... .+++++++++++|.++++++
T Consensus       335 -~~~~~~l~~~l~~~~gv~~~~~~--~~~iRi~~~~-~~~~~i~~~~~~l~~~~~~~  387 (388)
T PRK08637        335 -GVDAEELRVHLLEKYGIGTIALN--ETDLRIAFSC-VEEEDIPELFDSIYKAIKDL  387 (388)
T ss_pred             -hHHHHHHHHHHhhhcceEEEecc--CCceEEEeec-CCHHHHHHHHHHHHHHHHhc
Confidence             123457888885 6799887543  5689998755 67999999999999998764

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.87  E-value=2.7e-19  Score=182.35  Aligned_cols=332  Identities=17%  Similarity=0.114  Sum_probs=208.5

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccc---c----CChHHHHHHHHHHhhCCCC-CCEEEEeCChHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI---Y----LHHAIADFAEALASKMPGN-LKVVYFVNSGTEAN  168 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~---~----~~~~~~~l~~~La~~~~~~-~~~v~~~~sGseA~  168 (477)
                      .|||..+      .|-.++.+.+++.+.+.........   +    ......++++.++++++.+ .++|+|++|+++++
T Consensus        20 ~yld~~~------~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l   93 (403)
T TIGR01979        20 VYLDSAA------TSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESI   93 (403)
T ss_pred             EEEeCcc------ccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHH
Confidence            6888654      2346789999998876543211111   1    1234568889999998765 56899999999999


Q ss_pred             HHHHHHHH--hccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777          169 ELAMLMAR--LSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF  246 (477)
Q Consensus       169 ~~Al~~ar--~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~  246 (477)
                      ..++....  ...+++.|++.+..|++...........         .|.....++.......+      .+++++.+. 
T Consensus        94 ~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~---------~g~~~~~v~~~~~~~~~------~~~l~~~i~-  157 (403)
T TIGR01979        94 NLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAER---------TGATLKFIPLDDDGTLD------LDDLEKLLT-  157 (403)
T ss_pred             HHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHh---------cCcEEEEEecCCCCCCC------HHHHHHHhc-
Confidence            98887542  1235677888777766533211111000         12222212111111111      477777775 


Q ss_pred             cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceee--eccccc
Q 011777          247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIG  324 (477)
Q Consensus       247 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg  324 (477)
                         +++++|++..+++.+|.+.+    +++|.++|++||+++|+|++|+ +|..   ..  +.....+|+++  ++|.+|
T Consensus       158 ---~~~~lv~~~~~~~~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~g~~---~~--~~~~~~~d~~~~s~~K~~g  224 (403)
T TIGR01979       158 ---EKTKLVAITHVSNVLGTVNP----VEEIAKLAHQVGAKVLVDGAQA-VPHM---PV--DVQALDCDFYVFSGHKMYG  224 (403)
T ss_pred             ---cCCeEEEEEcccccccccCC----HHHHHHHHHHcCCEEEEEchhh-cCcc---cc--CccccCCCEEEEecccccC
Confidence               46778888877888888877    8999999999999999999986 3321   12  22233467664  569775


Q ss_pred             CccceEEEEeCHHHHHhhccccccc---------------------CCCCcHHHHHHHHHHHHhhch---hhHHHHHHHH
Q 011777          325 NGLPLGAVVTTPEIANVMAQKIQFN---------------------TFGGNPVCSAGGLAVLRVIDK---ERRQAHCADV  380 (477)
Q Consensus       325 ~G~pig~v~~~~~~~~~~~~~~~~~---------------------t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~  380 (477)
                       +..+|++++++++.+.+.....++                     .-+.+...+++..++++.+.+   +...++..++
T Consensus       225 -p~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l  303 (403)
T TIGR01979       225 -PTGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHEL  303 (403)
T ss_pred             -CCCceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence             334899999998877664321110                     012345566666777776644   3455666666


Q ss_pred             HHHHHHHHHHHHHhCCCceeee-----ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC----------
Q 011777          381 GSHLLGRLRTLQERHDIIGDVR-----GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL----------  445 (477)
Q Consensus       381 ~~~l~~~L~~l~~~~~~~~~v~-----g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----------  445 (477)
                      .++++++|+++    +.+.-..     ..+.++.+.+...         ...++.+.|.++||.+..+..          
T Consensus       304 ~~~l~~~l~~~----~g~~~~~~~~~~~~~~~v~~~~~~~---------~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~  370 (403)
T TIGR01979       304 TAYALERLGEI----PGLRIYGPRDAEDRGGIISFNVEGV---------HPHDVGTILDEEGIAVRSGHHCAQPLMRRFG  370 (403)
T ss_pred             HHHHHHHHhcC----CCEEEeCCCCccccCceEEEEeCCc---------CHHHHHHHHhhCCEEEcchhhhhHHHHHHhC
Confidence            66666666543    2221111     2355666665211         134677888999999876420          


Q ss_pred             CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          446 HGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       446 ~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      ..+++||+++..+|++|++++++.|+++++.+
T Consensus       371 ~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~  402 (403)
T TIGR01979       371 VPATCRASFYIYNTEEDIDALVEALKKVRKFF  402 (403)
T ss_pred             CCCEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence            14689999999999999999999999887653

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.87  E-value=9.7e-20  Score=184.28  Aligned_cols=327  Identities=15%  Similarity=0.139  Sum_probs=195.3

Q ss_pred             EEeecCCcccccCCCCCHHHHHHHHHHHhhcc---ccccccCChHHHHHHH---HHHhhCCC-CCCEEEEeCChHHHHHH
Q 011777           98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ---HATTIYLHHAIADFAE---ALASKMPG-NLKVVYFVNSGTEANEL  170 (477)
Q Consensus        98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~---~~~~~~~~~~~~~l~~---~La~~~~~-~~~~v~~~~sGseA~~~  170 (477)
                      |+|..++..      .++.|++++.+.+....   +....+.......+.+   ++.+.++. +.++|+||+|++|++..
T Consensus         2 yld~aa~~~------~~~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~   75 (382)
T TIGR03403         2 YLDNNATTM------LDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNW   75 (382)
T ss_pred             cccCcCCCC------CCHHHHHHHHHHHHhcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHH
Confidence            788776553      67899999999887532   1111122222333433   33444443 45789999999999999


Q ss_pred             HHHHHHh----ccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777          171 AMLMARL----STGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF  246 (477)
Q Consensus       171 Al~~ar~----~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~  246 (477)
                      +++.+..    ..+++.|++....|+...........          .|.....+|......++      .+++++.++ 
T Consensus        76 ~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~----------~G~~v~~v~~~~~g~~d------~~~l~~~i~-  138 (382)
T TIGR03403        76 VLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLES----------LGVEVTYLPINEQGTIT------AEQVREAIT-  138 (382)
T ss_pred             HHHHHHHhhcccCCCCEEEEcCCccHHHHHHHHHHHH----------CCCEEEEEecCCCCCCC------HHHHHHhcc-
Confidence            9986531    12345677765444433222111100          12222222211111112      467777775 


Q ss_pred             cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--cccc
Q 011777          247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIG  324 (477)
Q Consensus       247 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg  324 (477)
                         +++++|++..+++++|.+.+    +++|.++|++||+++|+|++|. +|.   .  .++.....+|++++|  |.+|
T Consensus       139 ---~~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~~ivD~a~~-~g~---~--~~~~~~~~~D~~~~s~~K~~g  205 (382)
T TIGR03403       139 ---EKTALVSVMWANNETGMIFP----IKEIGEICKERGVLFHTDAVQA-IGK---I--PVDVQKAGVDFLSFSAHKFHG  205 (382)
T ss_pred             ---cCCeEEEEEcccCCCccccC----HHHHHHHHHHcCCEEEEechhh-cCC---C--ccCccccCCCEEEEcchhhCC
Confidence               35677888878888998887    8999999999999999999987 332   1  123333457888777  9543


Q ss_pred             CccceEEEEeCHHHHHhhccccc-------ccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhC
Q 011777          325 NGLPLGAVVTTPEIANVMAQKIQ-------FNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERH  395 (477)
Q Consensus       325 ~G~pig~v~~~~~~~~~~~~~~~-------~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~  395 (477)
                       ...+|+++.+++..  +.....       ...++.|..++.++.++++.+.+  +...++.+++.+++.++|.+    .
T Consensus       206 -p~G~g~l~vr~~~~--~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~----~  278 (382)
T TIGR03403       206 -PKGVGGLYIRKGVE--LTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLE----L  278 (382)
T ss_pred             -CCceEEEEECCCCC--CCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc----C
Confidence             23478888776531  111110       11334667777777778876543  22334555555555555544    2


Q ss_pred             CCceeeec----cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC---------------------CCCEE
Q 011777          396 DIIGDVRG----RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL---------------------HGNVF  450 (477)
Q Consensus       396 ~~~~~v~g----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------~~~~i  450 (477)
                      +.+..+..    ...++.+.+..         .....+.+.|.++||.++.|..                     .++.+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~i  349 (382)
T TIGR03403       279 PDVFVVGDREHRVPNTILISIKG---------VEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAI  349 (382)
T ss_pred             CCEEEECCCCCCcCCEEEEEeCC---------CCHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeE
Confidence            32222211    12344444421         0134566778899999986411                     13579


Q ss_pred             EEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          451 RIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       451 Ri~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      |++++..+|++|||++++.|++++++
T Consensus       350 R~s~~~~~t~~did~~~~~l~~~~~~  375 (382)
T TIGR03403       350 RLSLSRFTTEEEIDYTIEVFKKAVQR  375 (382)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988764

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.87  E-value=1.1e-20  Score=194.15  Aligned_cols=339  Identities=12%  Similarity=0.048  Sum_probs=184.6

Q ss_pred             CCCCCHHHHHHHHHHHhhccccccccCChHHHHHHH-HHHhhCC---CCCC--EEEEeCChHHHHHHHHHHHH---hccC
Q 011777          110 CGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAE-ALASKMP---GNLK--VVYFVNSGTEANELAMLMAR---LSTG  180 (477)
Q Consensus       110 lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~-~La~~~~---~~~~--~v~~~~sGseA~~~Al~~ar---~~~~  180 (477)
                      .|...|+++.++.+.+....|.......+.++++++ .+.+.+.   ...+  +|++|+|+++|+..++....   ...+
T Consensus       104 p~~~~~~~~~~~~~~~~~~~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll~p  183 (521)
T TIGR03801       104 LGFDPDAFLYEMCDGIIGDNYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELLKK  183 (521)
T ss_pred             CCCCCCHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcCCC
Confidence            345566777777776532222222233344555554 3333322   1223  79999999999999887521   2346


Q ss_pred             CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCC-----CCCCHHHHHHHHHHHHhccCCCCeeEE
Q 011777          181 NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGS-----FGSDAARYAQDLQDHIDFGTSGKVAGF  255 (477)
Q Consensus       181 ~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~le~~i~~~~~~~~a~v  255 (477)
                      +++|++.+++|..+........           .++..++++......     |..|    .++++++++    .++++|
T Consensus       184 GD~Vlv~~P~y~~y~~~~~l~~-----------~g~~vv~i~~~~~~~~g~~~~~~d----~~~l~~~~~----~~~kai  244 (521)
T TIGR03801       184 GDKIALMTPIFTPYLEIPELPR-----------YDFEVVRIKADEMTEDGTHTWQYP----DKELEKLRD----PSIKAL  244 (521)
T ss_pred             CCEEEEeCCCcHHHHHHHHHhc-----------CCcEEEEeecccccccccccCCCC----HHHHHHhcC----CCCcEE
Confidence            7889999999987654322211           022222222111000     2212    356766554    355555


Q ss_pred             E-ecccCCCCCeeeCCchhHHHHHHHHHHh--CcEEEEcCcccCccCCCCCCccccccCCCcceeeeccccc-CccceEE
Q 011777          256 I-AETIQGVGGAVELAPGYLKLVYDIVRKA--GGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIG-NGLPLGA  331 (477)
Q Consensus       256 i-~epi~~~~G~~~~~~~~l~~l~~l~~~~--gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg-~G~pig~  331 (477)
                      + ++|. |++| .+.+++.+++|.++|++|  +++||+||+|..|......+... ..+...-+.+|||.++ .|||+||
T Consensus       245 ~l~nP~-NPTG-~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~-~~~~vI~v~SfSK~fg~~G~RlG~  321 (521)
T TIGR03801       245 FVVNPS-NPPS-VAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAE-LPYNTIGVYSFSKYFGATGWRLGT  321 (521)
T ss_pred             EEeCCC-CCCC-CCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhh-CCCCEEEEEcchhhccCchhhhhh
Confidence            5 5665 5555 566899999999999987  99999999999875311011111 1111222347999998 5999999


Q ss_pred             EEeCHH-----HH--------Hhh------------------------cccccccCCCCcHHHHH--H---HHHHHHhhc
Q 011777          332 VVTTPE-----IA--------NVM------------------------AQKIQFNTFGGNPVCSA--G---GLAVLRVID  369 (477)
Q Consensus       332 v~~~~~-----~~--------~~~------------------------~~~~~~~t~~~~~~~~a--a---a~a~l~~l~  369 (477)
                      ++++++     ++        +.+                        +......|.+.+.+.|.  |   +.+.++.  
T Consensus       322 i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~~--  399 (521)
T TIGR03801       322 IALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMDK--  399 (521)
T ss_pred             hhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcc--
Confidence            999864     22        111                        11112234444544443  2   3333331  


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhCCCce-eeecc-ceeEEEEEeeCCC---CCCccH-----HHHHHHHHHH-HHcCc
Q 011777          370 KERRQAHCADVGSHLLGRLRTLQERHDIIG-DVRGR-GLMVGMELVTDRK---EKTPAK-----AETAVLFEKL-RELGV  438 (477)
Q Consensus       370 ~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~-~v~g~-g~~~~i~~~~~~~---~~~~~~-----~~~~~~~~~l-~~~Gv  438 (477)
                      .+.+.+..   .+.++++...+.+..+... ..+.. |.++++++..-..   ..+-..     ....+++..| .+.||
T Consensus       400 ~~~y~~~~---~~~~~~R~~~l~~~Lg~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~gV  476 (521)
T TIGR03801       400 ENAYKAET---KDICRRREKLLFRGLGLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETGI  476 (521)
T ss_pred             chhHHHHH---HHHHHHHHHHHHHhcCCCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCCE
Confidence            12333333   3333333333333333211 12233 5666777642100   000000     0123444444 56799


Q ss_pred             eeeccCCCC---CEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          439 LVGKGGLHG---NVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       439 ~v~~~~~~~---~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .+.||..++   +++||+.. ..+++++.++.++|.+++.+
T Consensus       477 ~v~PG~~Fg~~~~~vRisla-~l~~~~~~~~~~rl~~~~~~  516 (521)
T TIGR03801       477 VLLPGGGFGGPEWSVRVSLA-NLNEYDYAEIGRAIRKILDE  516 (521)
T ss_pred             EEeCchhcCCCCCeEEEEec-CCCHHHHHHHHHHHHHHHHH
Confidence            999986554   57999642 26899999999999988753

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.87  E-value=2.1e-19  Score=184.32  Aligned_cols=336  Identities=15%  Similarity=0.090  Sum_probs=209.0

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccc---ccc----CChHHHHHHHHHHhhCCCC-CCEEEEeCChHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT---TIY----LHHAIADFAEALASKMPGN-LKVVYFVNSGTE  166 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~---~~~----~~~~~~~l~~~La~~~~~~-~~~v~~~~sGse  166 (477)
                      +..|||..+.      |..++.|.+++.+.+.......   ..+    ..+...++++.++++++.. .++|+|++|+|+
T Consensus        32 ~~iyLd~a~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~  105 (424)
T PLN02855         32 KLVYLDNAAT------SQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATE  105 (424)
T ss_pred             CeEEeeCccc------cCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHH
Confidence            3478887432      3467889999988776532111   111    1123568889999998864 468999999999


Q ss_pred             HHHHHHHHH-H-hccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHH
Q 011777          167 ANELAMLMA-R-LSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHI  244 (477)
Q Consensus       167 A~~~Al~~a-r-~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i  244 (477)
                      ++..+++.. . ...+++.|++....|++...........         .|+....++.......+      .+++++.+
T Consensus       106 al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~---------~g~~v~~v~~~~~~~~~------~~~l~~~i  170 (424)
T PLN02855        106 AINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQK---------TGAVLKFVGLTPDEVLD------VEQLKELL  170 (424)
T ss_pred             HHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHH---------cCCEEEEEecCCCCCcC------HHHHHHHh
Confidence            999988742 1 2345677888777776543221111000         12222221111111111      47788777


Q ss_pred             hccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eeccc
Q 011777          245 DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKG  322 (477)
Q Consensus       245 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~  322 (477)
                      .    .++++|++..+++++|.+.+    +++|.++|+++|+++|+|++|. +|..   .  ++.....+|++  ++.|.
T Consensus       171 ~----~~t~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~a~~-~g~~---~--~~~~~~~~d~~~~s~~K~  236 (424)
T PLN02855        171 S----EKTKLVATHHVSNVLGSILP----VEDIVHWAHAVGAKVLVDACQS-VPHM---P--VDVQTLGADFLVASSHKM  236 (424)
T ss_pred             c----cCceEEEEeCccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCc---C--CCchhcCCCEEEeecccc
Confidence            5    36788888888888998887    8999999999999999999995 4322   1  23223346766  46794


Q ss_pred             ccCccceEEEEeCHHHHHhhccccccc---------------------CCCCcHHHHHHHHHHHHhhch---hhHHHHHH
Q 011777          323 IGNGLPLGAVVTTPEIANVMAQKIQFN---------------------TFGGNPVCSAGGLAVLRVIDK---ERRQAHCA  378 (477)
Q Consensus       323 lg~G~pig~v~~~~~~~~~~~~~~~~~---------------------t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~  378 (477)
                      + |...+|++++++++.+.+.....++                     ..+.|..+.++..++++.+.+   ++..++..
T Consensus       237 ~-gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~  315 (424)
T PLN02855        237 C-GPTGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEV  315 (424)
T ss_pred             c-CCCccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            4 3345899999999887764321110                     112345556666677776654   34556666


Q ss_pred             HHHHHHHHHHHHHHHhCCCcee----eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccCC--------
Q 011777          379 DVGSHLLGRLRTLQERHDIIGD----VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGGL--------  445 (477)
Q Consensus       379 ~~~~~l~~~L~~l~~~~~~~~~----v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--------  445 (477)
                      ++.+++++.|.++. ...+...    ...++.++.+.+..         ....++.+.|.++ ||.+..+..        
T Consensus       316 ~l~~~l~~~L~~~~-g~~i~~~~~~~~~~r~~~v~~~~~~---------~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~  385 (424)
T PLN02855        316 ELGTYLYEKLSSVP-GVRIYGPKPSEGVGRAALCAFNVEG---------IHPTDLSTFLDQQHGVAIRSGHHCAQPLHRY  385 (424)
T ss_pred             HHHHHHHHHHhcCC-CEEEeCCCcccccCcccEEEEEECC---------cCHHHHHHHhcccCCEEEechhhhhHHHHHH
Confidence            66666666665431 0111111    11224455555521         1135688888887 999876421        


Q ss_pred             --CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          446 --HGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       446 --~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                        ..+++|++++...|++||+++++.|+++++.
T Consensus       386 ~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~  418 (424)
T PLN02855        386 LGVNASARASLYFYNTKEEVDAFIHALKDTIAF  418 (424)
T ss_pred             hCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence              1357999999999999999999999998764

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.87  E-value=2.7e-19  Score=182.11  Aligned_cols=329  Identities=15%  Similarity=0.139  Sum_probs=197.1

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccc-------cCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI-------YLHHAIADFAEALASKMPGNLKVVYFVNSGTEAN  168 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~-------~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~  168 (477)
                      +.|||..+..      ..++.|++++.+.+.........       ...+...++++.|+++++.+.+.|+|++|+|+++
T Consensus         4 ~~yld~aa~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~   77 (402)
T TIGR02006         4 PIYLDYAATT------PVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESN   77 (402)
T ss_pred             cEEeeCCcCC------CCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHH
Confidence            4799987644      35899999998887542111110       1123466788899999987777999999999999


Q ss_pred             HHHHHHHHh-c-cCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777          169 ELAMLMARL-S-TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF  246 (477)
Q Consensus       169 ~~Al~~ar~-~-~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~  246 (477)
                      +.+++.+.. . .+++.|++....|+...........          .|+....++.......+      .++++++++ 
T Consensus        78 ~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~----------~g~~v~~v~~~~~~~~d------~~~l~~~l~-  140 (402)
T TIGR02006        78 NLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLER----------EGFEVTYLPPKSNGLID------LEELKAAIR-  140 (402)
T ss_pred             HHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHh----------cCCEEEEEccCCCCcCC------HHHHHHhcC-
Confidence            999876643 1 2445666655544432222111100          12222222211111111      467777765 


Q ss_pred             cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--cccc
Q 011777          247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIG  324 (477)
Q Consensus       247 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg  324 (477)
                         +++++|++..+++++|.+.+    +++|.++|++||+++|+|++|+ +|..     .++..+..+|++++|  |.+|
T Consensus       141 ---~~~~lv~v~~~~n~tG~~~~----~~~I~~l~~~~g~~livD~a~a-~g~~-----~~~~~~~~~D~~~~s~~K~~g  207 (402)
T TIGR02006       141 ---DDTILVSIMHVNNEIGVIQD----IAAIGEICRERKVFFHVDAAQS-VGKI-----PINVNELKVDLMSISGHKIYG  207 (402)
T ss_pred             ---CCCEEEEEECCCcCceeccc----HHHHHHHHHHcCCEEEEEcchh-cCCc-----ccCccccCCCEEEEehhhhcC
Confidence               35788888888899998877    9999999999999999999997 4321     234445678999988  9654


Q ss_pred             CccceEEEEeCHHHHHhhccccccc-------CCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhC
Q 011777          325 NGLPLGAVVTTPEIANVMAQKIQFN-------TFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERH  395 (477)
Q Consensus       325 ~G~pig~v~~~~~~~~~~~~~~~~~-------t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~  395 (477)
                       ...+|+++.+++....+....+++       ..+.|...+.+..++++.+++  +...++.+++.++++++|+++    
T Consensus       208 -p~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~----  282 (402)
T TIGR02006       208 -PKGIGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKSI----  282 (402)
T ss_pred             -CCceEEEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC----
Confidence             345899988876544333322211       123345555555578877653  233445555555555555443    


Q ss_pred             CCcee---eecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC---------------------CCCCEE
Q 011777          396 DIIGD---VRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG---------------------LHGNVF  450 (477)
Q Consensus       396 ~~~~~---v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------------------~~~~~i  450 (477)
                      +.+.-   .... ...+.+.|...     +    .+.+...+  +|+.+..|.                     ...+++
T Consensus       283 ~~v~~~~~~~~~~p~~~~v~f~~~-----~----~~~~~~~l--~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~v  351 (402)
T TIGR02006       283 EEVYLNGDLEHRVPGNLNVSFNYV-----E----GESLIMAL--KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSI  351 (402)
T ss_pred             CCEEEeCCccccCCCeEEEEEeCc-----C----HHHHHHhc--CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceE
Confidence            22211   1101 01112333210     0    12333333  355544331                     013689


Q ss_pred             EEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          451 RIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       451 Ri~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      |+++...+|++|||++++.|++++++
T Consensus       352 R~S~~~~~t~edid~l~~~l~~~~~~  377 (402)
T TIGR02006       352 RFTIGRFTTEEEIDYAVKLVKSAIDK  377 (402)
T ss_pred             EEEecCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988753

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK10534 L-threonine aldolase; Provisional

Probab=99.87  E-value=5.6e-20  Score=182.55  Aligned_cols=321  Identities=17%  Similarity=0.172  Sum_probs=196.4

Q ss_pred             EEeecCCcccccCCCCCHHHHHHHHHHHhhcccccccc-CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHH
Q 011777           98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY-LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR  176 (477)
Q Consensus        98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~-~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar  176 (477)
                      .|||.++..+   | .+|.+.+++.+.....    ..| +.+...+|.+.|+++++.  +.+++++||++++..++....
T Consensus         1 ~~~~~~~~~~---~-p~~~~~~a~~~~~~~~----~~Y~~~~~~~~L~~~la~~~g~--~~~~v~~~g~~a~~~~l~~~~   70 (333)
T PRK10534          1 MIDLRSDTVT---R-PSRAMLEAMMAAPVGD----DVYGDDPTVNALQDYAAELSGK--EAALFLPTGTQANLVALLSHC   70 (333)
T ss_pred             CcccccccCC---C-CCHHHHHHHHhccCCC----cccCCCHHHHHHHHHHHHHhCC--CeEEEeCchHHHHHHHHHHhc
Confidence            3788877653   4 7899999987744332    234 678889999999999854  566799999999988887542


Q ss_pred             hccCCceEEEEccCccCCcc-cccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCee
Q 011777          177 LSTGNLGMIALRNAYHGGSS-GTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVA  253 (477)
Q Consensus       177 ~~~~~~~ii~~~~~yhG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a  253 (477)
                        .++++|++..++|..... ......+           +...+..+..  ..+..|    ++++++.+...  +..+++
T Consensus        71 --~~gd~vi~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~--~~~~~d----~~~l~~~i~~~~~~~~~~~  131 (333)
T PRK10534         71 --ERGEEYIVGQAAHNYLYEAGGAAVLG-----------SIQPQPIDAA--ADGTLP----LDKVAAKIKPDDIHFARTR  131 (333)
T ss_pred             --CCCCeeEEechhhhhHhcCCchHHhc-----------CceEEeecCC--CCCCCC----HHHHHHhhcccCcCcccce
Confidence              245667766554431111 0001100           1111211111  111112    46777766411  001455


Q ss_pred             EEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCC---CCCCccccccCCCc-ceeeecccccCccce
Q 011777          254 GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRT---GSHYWGFETQGVIP-DIVTMAKGIGNGLPL  329 (477)
Q Consensus       254 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~---G~~~~~~~~~gv~p-Divt~sK~lg~G~pi  329 (477)
                      +|+++.++  +|. +.+.+.+++|.++|++||+++|+||+|. |+..   + .... ......+ -+++|||+++.  ++
T Consensus       132 lv~l~np~--~G~-v~~~~~l~~i~~~~~~~~~~lvvDEA~~-~~~~~~~~-~~~~-~~~~~~~~~~~s~SK~~~~--~~  203 (333)
T PRK10534        132 LLSLENTH--NGK-VLPREYLKQAWEFTRERNLALHVDGARI-FNAVVAYG-CELK-EITQYCDSFTICLSKGLGT--PV  203 (333)
T ss_pred             EEEEecCC--CCe-ecCHHHHHHHHHHHHHcCCeEEeeHHHH-HHHHHHcC-CCHH-HHHhcCCEEEEEeEcCCCC--cc
Confidence            56655322  364 4578888999999999999999999876 4321   2 1110 1111111 24579998764  57


Q ss_pred             E-EEEeCHHHHHhhccccccc--CCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccce
Q 011777          330 G-AVVTTPEIANVMAQKIQFN--TFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGL  406 (477)
Q Consensus       330 g-~v~~~~~~~~~~~~~~~~~--t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~  406 (477)
                      | ++++++++++.+.......  .++.+.++++++.++|+..  .+.+++..+.++++.+.|+++    +. ...++.+.
T Consensus       204 G~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~r~~l~~~L~~~----g~-~~~~~~~n  276 (333)
T PRK10534        204 GSLLVGNRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHN--VARLQEDHDNAAWLAEQLREA----GA-DVMRQDTN  276 (333)
T ss_pred             cceEEcCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHhC----CC-ccCCCCce
Confidence            8 6888999998887543222  2334456677777777532  233333444456666666653    32 22334677


Q ss_pred             eEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          407 MVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       407 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      |+++.+..         ....++.+.|+++||++.++.    .+|+...+.+|++++++++++|++.+.
T Consensus       277 fv~~~~~~---------~~~~~~~~~l~~~gi~v~~~~----~~rl~~~~r~t~e~~~~~~~~l~~~~~  332 (333)
T PRK10534        277 MLFVRVGE---------EQAAALGEYMRERNVLINASP----IVRLVTHLDVSREQLAEVVAHWRAFLA  332 (333)
T ss_pred             EEEEECCc---------hhHHHHHHHHHHcCeeecCCc----eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence            88776621         124567889999999998752    578877667899999999999998764

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.87  E-value=8.5e-20  Score=185.46  Aligned_cols=322  Identities=14%  Similarity=0.091  Sum_probs=206.5

Q ss_pred             CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCC-CEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCc
Q 011777          113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNL-KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAY  191 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~-~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~y  191 (477)
                      -+++|++|+.+...  .|. .....+...+++++++++++.+. +.+++++||+++++.++...  ..++++|++.+++|
T Consensus        20 ~~~~V~~a~~~~~~--~~~-~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~--~~~Gd~Vlv~~~~~   94 (401)
T PLN02409         20 IPERVLRAMNRPNE--DHR-SPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNT--LSPGDKVVSFRIGQ   94 (401)
T ss_pred             CCHHHHHHhcCCCC--CCC-CHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhc--CCCCCEEEEeCCCc
Confidence            46777777754321  122 12234567788888988887653 57899999999999988754  34678899999888


Q ss_pred             cCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCc
Q 011777          192 HGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAP  271 (477)
Q Consensus       192 hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~  271 (477)
                      ++.....+.. .          .|.....++......++      .+++++.++....+++++|++..+.+.+|.+.+  
T Consensus        95 ~~~~~~~~~~-~----------~g~~v~~v~~~~~~~~~------~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~--  155 (401)
T PLN02409         95 FSLLWIDQMQ-R----------LNFDVDVVESPWGQGAD------LDILKSKLRQDTNHKIKAVCVVHNETSTGVTND--  155 (401)
T ss_pred             hhHHHHHHHH-H----------cCCceEEEECCCCCCCC------HHHHHHHHhhCcCCCccEEEEEeecccccccCC--
Confidence            7653211110 0          02122222111111111      478888887321136788888887778888877  


Q ss_pred             hhHHHHHHH--HHHhCcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccCccceEEEEeCHHHHHhhcccc-
Q 011777          272 GYLKLVYDI--VRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGLPLGAVVTTPEIANVMAQKI-  346 (477)
Q Consensus       272 ~~l~~l~~l--~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pig~v~~~~~~~~~~~~~~-  346 (477)
                        +++|.++  |+++|+++|+|++|+ +|.   ..  ++......|+++  .+|+++++.++|+++.++++++.+.... 
T Consensus       156 --~~~i~~l~~~~~~g~~~vvD~v~s-~g~---~~--id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~  227 (401)
T PLN02409        156 --LAGVRKLLDCAQHPALLLVDGVSS-IGA---LD--FRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKS  227 (401)
T ss_pred             --HHHHHHHHhhhccCcEEEEEcccc-cCC---cc--ccccccCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCC
Confidence              8888888  999999999999997 432   22  232233456664  5699988778999999999887765321 


Q ss_pred             --------------ccc---CCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCceee-ec-c
Q 011777          347 --------------QFN---TFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIGDV-RG-R  404 (477)
Q Consensus       347 --------------~~~---t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g-~  404 (477)
                                    ..+   .++.|...+.+..++++.+.+   ++..++.+++.+++++.|.++  ........ .. .
T Consensus       228 ~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~--g~~~~~~~~~~~s  305 (401)
T PLN02409        228 PRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAW--GLKLCTKKPEWRS  305 (401)
T ss_pred             CCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--CCeeccCChhhcc
Confidence                          011   234556667777788887654   345667777777777777654  12222211 11 1


Q ss_pred             ceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccC-C-CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          405 GLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGG-L-HGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       405 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~-~-~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +.+.++.+.        ......++.+.|. +.|+.+..|. . .+..||++....++++|+..++++|++++.+
T Consensus       306 ~~v~~~~~p--------~~~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~  372 (401)
T PLN02409        306 DTVTAVVVP--------EGIDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKD  372 (401)
T ss_pred             cceEEEeCC--------CCCCHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            233444431        1112345666654 6699998763 2 4689999999999999999999999999875

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.86  E-value=2.8e-20  Score=186.20  Aligned_cols=288  Identities=13%  Similarity=0.108  Sum_probs=182.6

Q ss_pred             ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCC
Q 011777          134 IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ  213 (477)
Q Consensus       134 ~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~  213 (477)
                      .|+.....+|.+.++++++.+.++|++|+|++|++..+++.... .|.+.|++..++|..+...+...            
T Consensus        56 ~Yp~~~~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~~-~g~d~vlv~~P~y~~y~~~~~~~------------  122 (354)
T PRK04635         56 RYPECQPPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFCE-PGQDSIACFGPTYGMYAISAETF------------  122 (354)
T ss_pred             cCCCCCHHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhcC-CCCCeEEEcCCChHHHHHHHHHc------------
Confidence            35555568899999999888888999999999999999885532 23378999999997654332221            


Q ss_pred             CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCc
Q 011777          214 GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEV  293 (477)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv  293 (477)
                       |...+.+|...  .+..|    .+.++. +     .++++|++...+|++|.+. +.+.+++|.+.|+  +++||+||+
T Consensus       123 -g~~v~~v~~~~--~~~~~----~~~l~~-~-----~~~~li~i~nP~NPTG~~~-~~~~l~~l~~~~~--~~~vivDea  186 (354)
T PRK04635        123 -NVGVKALPLTA--DYQLP----LDYIEQ-L-----DGAKLVFICNPNNPTGTVI-DRADIEQLIEMTP--DAIVVVDEA  186 (354)
T ss_pred             -CCEEEEEecCC--CCCCC----HHHHHh-c-----cCCCEEEEeCCCCCCCccC-CHHHHHHHHHhCC--CcEEEEeCc
Confidence             22222222211  12211    244432 2     2455555556667777554 5666666666655  599999999


Q ss_pred             ccCccCCCCCCccccccCCCcc---eeeeccccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc
Q 011777          294 QTGFGRTGSHYWGFETQGVIPD---IVTMAKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID  369 (477)
Q Consensus       294 ~~gfgr~G~~~~~~~~~gv~pD---ivt~sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~  369 (477)
                      |..|.... ...  +.....+.   +-+|||.+| .|+|+||+++++++++.+....  ..++.+...+.++.++|+...
T Consensus       187 y~~~~~~~-s~~--~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~~~~~~l~~~~--~~~~~~~~~~~~a~~~l~~~~  261 (354)
T PRK04635        187 YIEFCPEY-SVA--DLLASYPNLVVLRTLSKAFALAGARCGFTLANEELIEILMRVI--APYPVPLPVSEIATQALSEAG  261 (354)
T ss_pred             hHhhccCc-chH--HHHhhCCCEEEEechHHHhhhhHHHHhhhhCCHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhccc
Confidence            98875321 111  11111223   337999998 7999999999999998876432  346667777777777775321


Q ss_pred             hh---hHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-
Q 011777          370 KE---RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-  445 (477)
Q Consensus       370 ~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-  445 (477)
                      .+   +..+++++.++++.+.|++    ++.+...++.|.|+++.+.        +   ..++.+.|.++||.+..++. 
T Consensus       262 ~~~~~~~~~~~~~~r~~l~~~L~~----~~~~~~~~~~g~f~~~~~~--------~---~~~~~~~l~~~gv~v~~~~~~  326 (354)
T PRK04635        262 LARMKFQVLDLNAQGARLQAALSM----YGGAKVLEGNGNYVLAKFD--------D---VDAVFKALWDAGIVARAYKDP  326 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh----CCCceECCCCCcEEEEECC--------C---HHHHHHHHHHCCEEEEECCCC
Confidence            11   2223344444455555443    3423334556788887662        1   34677888999999976532 


Q ss_pred             -CCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          446 -HGNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       446 -~~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                       .++++||+.   .+++|++.++++|++-
T Consensus       327 ~~~~~lRis~---~~~e~~~~l~~al~~~  352 (354)
T PRK04635        327 RLANCIRFSF---SNRAETDKLIGLIRNQ  352 (354)
T ss_pred             CCCCeEEEEe---CCHHHHHHHHHHHHHh
Confidence             246899964   4789999999999764

>TIGR01814 kynureninase kynureninase

Probab=99.86  E-value=2.9e-19  Score=182.12  Aligned_cols=336  Identities=16%  Similarity=0.097  Sum_probs=197.5

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc--cc-----CChHHHHHHHHHHhhCCCCCCEEEEeCChHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT--IY-----LHHAIADFAEALASKMPGNLKVVYFVNSGTE  166 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~--~~-----~~~~~~~l~~~La~~~~~~~~~v~~~~sGse  166 (477)
                      ++..|||..+      +|-.++.+.+++.+.++.......  .+     ......++ +++ ++++.+.++|+|++|+|+
T Consensus        26 ~~~iyld~~a------~g~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~g~~~~~v~~~~~~t~   97 (406)
T TIGR01814        26 NAVIYLDGNS------LGLMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESL-LKL-RLVGAKEDEVVVMNTLTI   97 (406)
T ss_pred             CCcEEecCCC------cCcCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhh-ccc-cccCCCCCcEEEeCCchH
Confidence            4457888543      233578899999887765321111  11     11222233 345 677777788999999999


Q ss_pred             HHHHHHHHHHhccCCc-eEEEEccCccCCcccccccccCCCCCCCCCCCCeee----ecCCCCcCCCCCCCHHHHHHHHH
Q 011777          167 ANELAMLMARLSTGNL-GMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHH----VVNPDPYHGSFGSDAARYAQDLQ  241 (477)
Q Consensus       167 A~~~Al~~ar~~~~~~-~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~le  241 (477)
                      ++..+++......+++ .|++....|.............         .|+..    +..+.......+      .++++
T Consensus        98 ~l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~g~~~------~~~l~  162 (406)
T TIGR01814        98 NLHLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQL---------HGLTVEESMVQIEPREEETLR------LEDIL  162 (406)
T ss_pred             HHHHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHh---------cCCCcccceEEeccCCCCccC------HHHHH
Confidence            9999887642211223 4554444554322211110000         01111    111111000111      46777


Q ss_pred             HHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecc
Q 011777          242 DHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAK  321 (477)
Q Consensus       242 ~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK  321 (477)
                      +.++.. .+++++|+++.+++.+|.+.|    +++|.++|++||+++|+|++|+ +|..   .+.++.+++...+.+..|
T Consensus       163 ~~~~~~-~~~t~lv~~~~v~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~-~G~~---~id~~~~gvD~~~~s~hK  233 (406)
T TIGR01814       163 DTIEKN-GDDIAVILLSGVQYYTGQLFD----MAAITRAAHAKGALVGFDLAHA-VGNV---PLDLHDWGVDFACWCTYK  233 (406)
T ss_pred             HHHHhc-CCCeEEEEEeccccccceecC----HHHHHHHHHHcCCEEEEEcccc-cCCc---ccccccCCCCEEEEcCcc
Confidence            776532 257899999999999999888    9999999999999999999998 4432   233333444333334559


Q ss_pred             cccCccceEEEEeCHHHHHhhcccccc-------------c----------CCCCcHHHHHHHHHHHHhhch---hhHHH
Q 011777          322 GIGNGLPLGAVVTTPEIANVMAQKIQF-------------N----------TFGGNPVCSAGGLAVLRVIDK---ERRQA  375 (477)
Q Consensus       322 ~lg~G~pig~v~~~~~~~~~~~~~~~~-------------~----------t~~~~~~~~aaa~a~l~~l~~---~~~~~  375 (477)
                      .+++|.. |+++..++..+.+.....+             .          ..+.|..++++..++|+.+.+   +...+
T Consensus       234 ~l~g~pG-~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~  312 (406)
T TIGR01814       234 YLNAGPG-AGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRK  312 (406)
T ss_pred             ccCCCCC-eEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            9987654 5555544333223221000             0          112356677777788888754   44566


Q ss_pred             HHHHHHHHHHHHHHHHHH---hCCCce--eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEE
Q 011777          376 HCADVGSHLLGRLRTLQE---RHDIIG--DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVF  450 (477)
Q Consensus       376 ~~~~~~~~l~~~L~~l~~---~~~~~~--~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~i  450 (477)
                      +..++.+++++.|.++..   ...+..  +...++.++.+.+. .         ....+.+.|.++||.+...+  ++.+
T Consensus       313 ~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~---------~~~~~~~~L~~~gi~v~~~~--~~~i  380 (406)
T TIGR01814       313 KSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-V---------PGKAVFQALIKRGVIGDKRE--PSVI  380 (406)
T ss_pred             HHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-C---------CHHHHHHHHHHCCEEEeccC--CCeE
Confidence            677777777777665411   011111  11223445555542 0         13568888999999886432  4689


Q ss_pred             EEeC-CCCCcHHHHHHHHHHHHHHH
Q 011777          451 RIKP-PMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       451 Ri~p-~~~~t~e~i~~~l~~l~~~l  474 (477)
                      |++| ++.+|++||++++++|++++
T Consensus       381 RiS~~~~~nt~~did~l~~~l~~~~  405 (406)
T TIGR01814       381 RVAPVPLYNTFVDVYDAVNVLEEIL  405 (406)
T ss_pred             EEechhccCCHHHHHHHHHHHHHHh
Confidence            9999 68999999999999998865

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.86  E-value=4.4e-19  Score=178.74  Aligned_cols=320  Identities=19%  Similarity=0.204  Sum_probs=214.7

Q ss_pred             EEeecCCcccccCCCCCHHHHHHHHHHHhhccccc---cc----cCChHHHHHHHHHHhhCCCCC-CEEEEeCChHHHHH
Q 011777           98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT---TI----YLHHAIADFAEALASKMPGNL-KVVYFVNSGTEANE  169 (477)
Q Consensus        98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~---~~----~~~~~~~~l~~~La~~~~~~~-~~v~~~~sGseA~~  169 (477)
                      |||..+      .|..++.|.+++.+.+.......   ..    ...+...++++.++++++.+. +.|+|++|+|+|++
T Consensus         2 Yld~~~------~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~   75 (371)
T PF00266_consen    2 YLDNAG------TGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALN   75 (371)
T ss_dssp             EEBTSS------S-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHH
T ss_pred             EeeCCC------ccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhh
Confidence            777543      23578999999999887642211   11    113446788999999998877 78999999999999


Q ss_pred             HHHHHHHh-ccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          170 LAMLMARL-STGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       170 ~Al~~ar~-~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      .++...+. ..++++|++....|++...........         .|.....++.......+      ++++++.|.   
T Consensus        76 ~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~---------~g~~v~~i~~~~~~~~~------~~~~~~~l~---  137 (371)
T PF00266_consen   76 AVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKR---------KGAEVRVIPADPGGSLD------LEDLEEALN---  137 (371)
T ss_dssp             HHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHH---------TTEEEEEEEEGTTSSCS------HHHHHHHHH---
T ss_pred             hhhhcccccccccccccccccccccccccccccccc---------chhhhccccccccchhh------hhhhhhhhc---
Confidence            99987743 456788999999888775222222100         12222222221222222      578888886   


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--ccccCc
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGNG  326 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G  326 (477)
                       +++.+|++..+.+..|.+.|    +++|.++|+++|+++++|-+|+ +|..     .++.....+|++++|  | ++|+
T Consensus       138 -~~~~lv~~~~~~~~tG~~~p----i~~I~~~~~~~~~~~~vD~~~~-~g~~-----~id~~~~~~D~~~~s~~K-l~gp  205 (371)
T PF00266_consen  138 -PDTRLVSISHVENSTGVRNP----IEEIAKLAHEYGALLVVDAAQS-AGCV-----PIDLDELGADFLVFSSHK-LGGP  205 (371)
T ss_dssp             -TTESEEEEESBETTTTBBSS----HHHHHHHHHHTTSEEEEE-TTT-TTTS-----S--TTTTTESEEEEESTS-TTSS
T ss_pred             -cccceEEeecccccccEEee----eceehhhhhccCCceeEechhc-cccc-----cccccccccceeeecccc-cCCC
Confidence             68899999999889998888    9999999999999999999997 5432     234445567888776  9 9887


Q ss_pred             cceEEEEeCHHHHHhhcccccccC------------------C---CCcHHHHHHHHHHHHhhch---hhHHHHHHHHHH
Q 011777          327 LPLGAVVTTPEIANVMAQKIQFNT------------------F---GGNPVCSAGGLAVLRVIDK---ERRQAHCADVGS  382 (477)
Q Consensus       327 ~pig~v~~~~~~~~~~~~~~~~~t------------------~---~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~  382 (477)
                      ..+|+++.+++..+.+.+...++.                  |   ..|.....+..++++.+.+   ++..++..++.+
T Consensus       206 ~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~  285 (371)
T PF00266_consen  206 PGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAE  285 (371)
T ss_dssp             STEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhhheehhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHH
Confidence            789999999998888854321111                  1   2355566666678887744   344566666666


Q ss_pred             HHHHHHHHHHHhCCCce-----eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCC----------
Q 011777          383 HLLGRLRTLQERHDIIG-----DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHG----------  447 (477)
Q Consensus       383 ~l~~~L~~l~~~~~~~~-----~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~----------  447 (477)
                      ++++.|.++    +.+.     .....+.++.+.+...         ....+.+.|.++||.+..|....          
T Consensus       286 ~~~~~l~~~----~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~  352 (371)
T PF00266_consen  286 YLREALEEL----PGIEVLGPDDEPRRPSIVSFNLPGS---------DADDVVKYLEERGIAVSTGSACAGPSLDILGMG  352 (371)
T ss_dssp             HHHHHHHHT----TTEEESSSSCGGBGTTEEEEEETTS---------SHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTT
T ss_pred             HHHhhhhcC----CceeEeeecccccccceEEEeecCC---------CHHHHHHHHhhcCEEEeccCcccHHHHHHhCCC
Confidence            666666664    3221     1233456666666211         24678889999999998853322          


Q ss_pred             CEEEEeCCCCCcHHHHHHH
Q 011777          448 NVFRIKPPMCFTKDDADFL  466 (477)
Q Consensus       448 ~~iRi~p~~~~t~e~i~~~  466 (477)
                      +++|++++..+|++|||++
T Consensus       353 ~~iRvS~~~~nt~~dv~~l  371 (371)
T PF00266_consen  353 GVIRVSLHYYNTEEDVDRL  371 (371)
T ss_dssp             TEEEEE-GTTSSHHHHHHH
T ss_pred             CEEEEeccCCCCHHHHhhC
Confidence            7999999999999999975

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.86  E-value=2.4e-19  Score=180.02  Aligned_cols=330  Identities=15%  Similarity=0.116  Sum_probs=193.2

Q ss_pred             CCCCCHHHHHHHHHHHhhccccc------cccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCce
Q 011777          110 CGHCHPDVLNAIFEQSKLLQHAT------TIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG  183 (477)
Q Consensus       110 lGh~~p~v~~Av~~~l~~~~~~~------~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~  183 (477)
                      =|+..|++++++.+.......+.      ....++...++.++++++++.  +.+++++||++++..++....  .+++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~~i~~~~g~t~al~~~l~~~~--~~gd~   85 (361)
T cd06452          10 GGRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM--DEARVTPGAREGKFAVMHSLC--EKGDW   85 (361)
T ss_pred             CCCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCC--ceEEEeCCHHHHHHHHHHHhc--CCCCE
Confidence            36778999999888764322211      112246688999999999865  789999999999999988653  35567


Q ss_pred             EEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC---CCCeeEEEeccc
Q 011777          184 MIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT---SGKVAGFIAETI  260 (477)
Q Consensus       184 ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~---~~~~a~vi~epi  260 (477)
                      |++...+|++....+ ..            .|...+.++......+..|    .+++++.++...   ..++++|++...
T Consensus        86 Vl~~~~~~~~~~~~~-~~------------~g~~~~~v~~~~~~~~~~d----~~~l~~~l~~~~~~~~~~~~lv~l~~p  148 (361)
T cd06452          86 VVVDGLAHYTSYVAA-ER------------AGLNVREVPNTGHPEYHIT----PEGYAEVIEEVKDEFGKPPALALLTHV  148 (361)
T ss_pred             EEEcCCcchHHHHHH-Hh------------cCCEEEEEecCCCCCcccC----HHHHHHHHHHHhhccCCCceEEEEECC
Confidence            777766665543211 11            1222222221111111112    467777765211   135677777776


Q ss_pred             CCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHH
Q 011777          261 QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIAN  340 (477)
Q Consensus       261 ~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~  340 (477)
                      +++.|.+.+    +++|.++|+++|+++|+||+|. +|..   .+....++....+.+++|++++|.++|++++++++++
T Consensus       149 ~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~---~~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~  220 (361)
T cd06452         149 DGNYGNLHD----AKKIAKVCHEYGVPLLLNGAYT-VGRM---PVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWAD  220 (361)
T ss_pred             CCCCeeecc----HHHHHHHHHHcCCeEEEECCcc-cCCc---CCCHHHcCCCEEEecCCccccCCCCeEEEEECHHHHH
Confidence            777786655    8999999999999999999997 3321   1222334444445568899987789999999999988


Q ss_pred             hhcccccc------cCCCC--cHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceee---eccceeE
Q 011777          341 VMAQKIQF------NTFGG--NPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDV---RGRGLMV  408 (477)
Q Consensus       341 ~~~~~~~~------~t~~~--~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v---~g~g~~~  408 (477)
                      .+......      ..+++  +...+++++++++.+.+ -+...+..+..+++++.|+++    +.+...   .+...++
T Consensus       221 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~l----~g~~v~~~~~~~~n~~  296 (361)
T cd06452         221 IVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAELEKI----EGIKQLGEKPKNHDLM  296 (361)
T ss_pred             HHhccccccccceeeeeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEECCCCCCCceE
Confidence            87543211      11111  12234444555544321 111222223335666665543    211111   2233444


Q ss_pred             EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          409 GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       409 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      .++...-............++.+.|+++||.+...+ .++++|+.. ..++++|++.++++|+++.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~-~~~~~ri~~-~g~~~e~~~~l~~al~~~~  360 (361)
T cd06452         297 FFETPSFDEIAKKHKRRGYFLYSELKKRGIHGIKPG-LTRYFKLST-YGLTWEQVEYVVDAFKEIA  360 (361)
T ss_pred             EEEcCCcchhhhhccccchhHHHHHHHcCceEEcCC-CceEEEEEe-cCCCHHHHHHHHHHHHHHh
Confidence            444310000000000112358899999999965433 245889975 3379999999999998764

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PLN02397 aspartate transaminase

Probab=99.85  E-value=3e-19  Score=182.55  Aligned_cols=275  Identities=12%  Similarity=0.085  Sum_probs=157.0

Q ss_pred             eCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHH
Q 011777          161 VNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDL  240 (477)
Q Consensus       161 ~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  240 (477)
                      +.+|+.+..+++.+.....+++.|++.+++|.++.......+.             ..+++|......+..|    .+.+
T Consensus       122 i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~g~-------------~~~~v~l~~~~~~~~d----~~~l  184 (423)
T PLN02397        122 CLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHHNIFRDAGV-------------PVRTYRYYDPKTRGLD----FDGL  184 (423)
T ss_pred             cccchHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHcCC-------------eEEEeecccCcCCccC----HHHH
Confidence            3344444443333333334678999999999887555444322             2222221000012222    3555


Q ss_pred             HHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC--CCccc-cc--cC-CCc
Q 011777          241 QDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS--HYWGF-ET--QG-VIP  314 (477)
Q Consensus       241 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~--~~~~~-~~--~g-v~p  314 (477)
                      ++.+... ..++.++++...+|++| .+++++.+++|.++|++||+++|+||+|.+|...+.  ..... ..  .+ ...
T Consensus       185 ~~~l~~~-~~~~~~i~~~~P~NPTG-~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI  262 (423)
T PLN02397        185 LEDLKAA-PDGSFVLLHACAHNPTG-VDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEIL  262 (423)
T ss_pred             HHHHHhC-CCCCEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEE
Confidence            5555422 23455666555666677 556899999999999999999999999999965330  11111 11  11 112


Q ss_pred             ceeeeccccc-CccceEEEE--e-CHHHHHh----hcccccccCCCCcHHHHHHHHHHHHhhc-h-------hhHHHHHH
Q 011777          315 DIVTMAKGIG-NGLPLGAVV--T-TPEIANV----MAQKIQFNTFGGNPVCSAGGLAVLRVID-K-------ERRQAHCA  378 (477)
Q Consensus       315 Divt~sK~lg-~G~pig~v~--~-~~~~~~~----~~~~~~~~t~~~~~~~~aaa~a~l~~l~-~-------~~~~~~~~  378 (477)
                      -+-+|||.++ .|||+||++  + ++++++.    +........++.+.+++.++.++|+.-. .       ++..+.++
T Consensus       263 ~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~  342 (423)
T PLN02397        263 VAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRII  342 (423)
T ss_pred             EEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            2337999999 599999984  4 5665443    3222222334556778877777775321 0       12333445


Q ss_pred             HHHHHHHHHHHHHHHhCCCceeeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHH-HHcCceeeccCCCCCEEEEeCCC
Q 011777          379 DVGSHLLGRLRTLQERHDIIGDVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKL-RELGVLVGKGGLHGNVFRIKPPM  456 (477)
Q Consensus       379 ~~~~~l~~~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~~~iRi~p~~  456 (477)
                      ++.+.+.+.|+++.... .+..+.+. |+++|+.+.             .++++.| .+.||.+.++    +  |+++. 
T Consensus       343 ~rr~~l~~~L~~~~~~~-~~~~~~p~gg~fl~~~l~-------------~~~~~~Ll~~~~V~v~~~----~--Ri~~~-  401 (423)
T PLN02397        343 SMRQKLYDALEARGSPG-DWSHITKQIGMFSFTGLN-------------KEQVDRMTKEYHIYMTRD----G--RISMA-  401 (423)
T ss_pred             HHHHHHHHHHHhcCCCC-CCCcccCCceEEEecCCC-------------HHHHHHHHHhCCEEECCC----C--eEEEe-
Confidence            55555555555431000 12223344 555566541             2355555 5669998643    2  88642 


Q ss_pred             CCcHHHHHHHHHHHHHHHh
Q 011777          457 CFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       457 ~~t~e~i~~~l~~l~~~l~  475 (477)
                      ..+++++++++++|.+++.
T Consensus       402 ~~~~~~i~~~~~~i~~~~~  420 (423)
T PLN02397        402 GLSSKNVPYLADAIHAVVT  420 (423)
T ss_pred             eCCHHHHHHHHHHHHHHHh
Confidence            3789999999999999874

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.85  E-value=6.1e-19  Score=177.59  Aligned_cols=321  Identities=17%  Similarity=0.136  Sum_probs=197.6

Q ss_pred             CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCC--CEEEEeCChHHHHHHHHHHHHhccCCceEEEEccC
Q 011777          113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNL--KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNA  190 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~--~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~  190 (477)
                      ..|.+.+++.+..   .+....|. ....+++++++++++...  +.+++++||+++++.++....  .+++++++..++
T Consensus        16 ~~~~~~~a~~~~~---~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~--~~~~~vlv~~~~   89 (368)
T PRK13479         16 TSRTVREAMLRDW---GSWDDDFN-ALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLV--PRDGKVLVPDNG   89 (368)
T ss_pred             CCHHHHHHhCCCC---CCCChHHH-HHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhcc--CCCCeEEEEeCC
Confidence            4677777765543   12221122 467889999999987643  468899999999999998653  255678887777


Q ss_pred             ccCCcc-cccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeC
Q 011777          191 YHGGSS-GTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVEL  269 (477)
Q Consensus       191 yhG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~  269 (477)
                      |++... ......+          ..+..++.+  ....++      .+++++.++.  ..++..|.+..+++++|.+.+
T Consensus        90 ~~~~~~~~~~~~~g----------~~~~~i~~~--~~~~~d------~~~l~~~l~~--~~~~~~v~~~~~~~~tG~~~~  149 (368)
T PRK13479         90 AYGARIAQIAEYLG----------IAHVVLDTG--EDEPPD------AAEVEAALAA--DPRITHVALVHCETTTGILNP  149 (368)
T ss_pred             chHHHHHHHHHHcC----------CcEEEEECC--CCCCCC------HHHHHHHHHh--CCCCcEEEEEcccCccccccC
Confidence            776531 1111111          012222221  111111      4778887762  124555555566667787777


Q ss_pred             CchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccCccceEEEEeCHHHHHhhccccc
Q 011777          270 APGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGNGLPLGAVVTTPEIANVMAQKIQ  347 (477)
Q Consensus       270 ~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G~pig~v~~~~~~~~~~~~~~~  347 (477)
                          +++|.++|+++|+++|+|++|+ ||..   .....  ...+|++  +++|.+.++.++|++++++++++.+.....
T Consensus       150 ----~~~i~~l~~~~~~~livDa~~~-~g~~---~~~~~--~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~  219 (368)
T PRK13479        150 ----LDEIAAVAKRHGKRLIVDAMSS-FGAI---PIDIA--ELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSR  219 (368)
T ss_pred             ----HHHHHHHHHHcCCEEEEEcccc-cCCc---ccccc--ccCceEEEecCccccccCCCceEEEECHHHHHHhhcCCC
Confidence                8999999999999999998774 6532   22222  2345655  467998765568999999998877654311


Q ss_pred             -----------------ccCCCCcHHHHHHHHHHHHhhchh----hHHHHHHHHHHHHHHHHHHHHHhCCCceee-eccc
Q 011777          348 -----------------FNTFGGNPVCSAGGLAVLRVIDKE----RRQAHCADVGSHLLGRLRTLQERHDIIGDV-RGRG  405 (477)
Q Consensus       348 -----------------~~t~~~~~~~~aaa~a~l~~l~~~----~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g~g  405 (477)
                                       ...|+.|...+++..++++.+.++    +..+++.++.+++++.|.++  ........ ....
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~  297 (368)
T PRK13479        220 SLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL--GFEPLLDAEIQSP  297 (368)
T ss_pred             CeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc--CCcccCCchhcCc
Confidence                             112456666777777777766433    34455566666666666554  11111110 0111


Q ss_pred             eeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC-CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          406 LMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH-GNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       406 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      ....+.+...     + .....++.+.|.++||.+.++... .+++|++....++++|++++++.|+++++++
T Consensus       298 ~~~~~~~~~~-----~-~~~~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~  364 (368)
T PRK13479        298 IIVTFHAPAD-----P-AYDFKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVDAADIRRLVAAIAEALYWM  364 (368)
T ss_pred             eEEEEECCCC-----C-CcCHHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence            2222322111     0 012357888999999999876432 3689998766779999999999999988753

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.85  E-value=2.3e-18  Score=173.71  Aligned_cols=317  Identities=16%  Similarity=0.123  Sum_probs=196.0

Q ss_pred             CCHHHHHHHHHHHhhccccccccC--ChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc----cCCceEEE
Q 011777          113 CHPDVLNAIFEQSKLLQHATTIYL--HHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS----TGNLGMIA  186 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~~~--~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~----~~~~~ii~  186 (477)
                      ++|.+.+++.+.+.........+.  .+...++.++|+++++.+.+.+++++||++++..++..++..    .+++.|++
T Consensus        32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~  111 (373)
T TIGR03812        32 PHPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIV  111 (373)
T ss_pred             chHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEE
Confidence            578888888776554211112222  244578999999999876567889999999999998766532    23357888


Q ss_pred             EccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCe
Q 011777          187 LRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGA  266 (477)
Q Consensus       187 ~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~  266 (477)
                      .+++|+.+...+. ..            |.....++.......  |    .+++++.++   ++.++.+++.| ++++|.
T Consensus       112 ~~~~h~~~~~~~~-~~------------G~~~~~v~~~~~~~~--d----~~~l~~~l~---~~~~~vv~~~~-~~~tG~  168 (373)
T TIGR03812       112 PESAHFSFEKAAE-ML------------GLELRYAPLDEDYTV--D----VKDVEDLID---DNTIGIVGIAG-TTELGQ  168 (373)
T ss_pred             CCcchHHHHHHHH-Hc------------CCeEEEEeeCCCCCc--C----HHHHHHHHh---hCcEEEEEECC-CCCCCc
Confidence            7777765432211 11            222222221111111  1    477877775   23345666666 456787


Q ss_pred             eeCCchhHHHHHHHHHHhCcEEEEcCcccCccC--C--CCCCccccccCCCcceeeec--ccccCccceEEEE-eCHHHH
Q 011777          267 VELAPGYLKLVYDIVRKAGGVCIADEVQTGFGR--T--GSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVV-TTPEIA  339 (477)
Q Consensus       267 ~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr--~--G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~-~~~~~~  339 (477)
                      +.+    +++|.++|+++|+++|+|++|.++-.  .  |.....++..-...|.++++  |...++.|.|+++ .++++.
T Consensus       169 ~~~----~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~  244 (373)
T TIGR03812       169 IDD----IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYL  244 (373)
T ss_pred             cCC----HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHH
Confidence            766    99999999999999999999975421  0  00000111111134555543  7333567887665 577777


Q ss_pred             Hhhccccc--ccC------CCCcHHHHHHHHHHHHhhchh---hHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeE
Q 011777          340 NVMAQKIQ--FNT------FGGNPVCSAGGLAVLRVIDKE---RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMV  408 (477)
Q Consensus       340 ~~~~~~~~--~~t------~~~~~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~  408 (477)
                      +.+.....  ...      .+.++..++++.++|+.+.++   +..++..++.++++++|+++    +......+...++
T Consensus       245 ~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~v  320 (373)
T TIGR03812       245 KYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKI----GFEPVIEPVLNIV  320 (373)
T ss_pred             hhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC----CCeEEcCCCceEE
Confidence            76642111  010      123456777888888877553   45677778888888877764    2211122333444


Q ss_pred             EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777          409 GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDY  472 (477)
Q Consensus       409 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~  472 (477)
                      .+.+        +.   ...+.+.|.++||++.... ..+++|++++..+|++|++++++.|++
T Consensus       321 ~~~~--------~~---~~~v~~~L~~~gi~v~~~~-~~~~iRis~~~~~t~edid~l~~~L~~  372 (373)
T TIGR03812       321 AFEV--------DD---PEEVRKKLRDRGWYVSVTR-CPKALRIVVMPHVTREHIEEFLEDLKE  372 (373)
T ss_pred             EEEe--------CC---HHHHHHHHHHCCceeccCC-CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence            4443        11   2468889999999997652 357899999999999999999999975

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PLN02651 cysteine desulfurase

Probab=99.85  E-value=1.7e-19  Score=181.20  Aligned_cols=319  Identities=17%  Similarity=0.149  Sum_probs=194.0

Q ss_pred             EEeecCCcccccCCCCCHHHHHHHHHHHhhcc-cccc------ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHH
Q 011777           98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-HATT------IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANEL  170 (477)
Q Consensus        98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-~~~~------~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~  170 (477)
                      |||..+..      ..+++|.+++.+.+.... ....      ....+...+++++|+++++.+.+.|+|++|+|+|+..
T Consensus         2 Yld~a~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~   75 (364)
T PLN02651          2 YLDMQATT------PIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNL   75 (364)
T ss_pred             cccCcCCC------CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHH
Confidence            67765433      368999999988875421 1110      1113446788899999998777789999999999999


Q ss_pred             HHHHHHhc--cCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          171 AMLMARLS--TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       171 Al~~ar~~--~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      +++.+...  .++++|++....|+...........          .|+....++.......+      .++++++++   
T Consensus        76 ~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~----------~g~~v~~v~~~~~~~~d------~~~l~~~i~---  136 (364)
T PLN02651         76 AIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQ----------EGFEVTYLPVKSDGLVD------LDELAAAIR---  136 (364)
T ss_pred             HHHHHHHhccCCCCEEEEcccccHHHHHHHHHHHh----------cCCEEEEEccCCCCcCC------HHHHHHhcC---
Confidence            99876432  3456777766555543222111110          12222111111111111      477888775   


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--ccccCc
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGNG  326 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G  326 (477)
                       +++++|++..+++++|.+.+    +++|.++|++||+++++|.+|+ +|.     ..++.....+|++++|  | +++.
T Consensus       137 -~~t~lv~v~~~~n~tG~~~~----l~~I~~~~~~~g~~~~vD~a~~-~g~-----~~~~~~~~~~D~~~~s~hK-~~gp  204 (364)
T PLN02651        137 -PDTALVSVMAVNNEIGVIQP----VEEIGELCREKKVLFHTDAAQA-VGK-----IPVDVDDLGVDLMSISGHK-IYGP  204 (364)
T ss_pred             -CCcEEEEEECCCCCceeccc----HHHHHHHHHHcCCEEEEEcchh-hCC-----cccCcccCCCCEEEechhh-hCCC
Confidence             45788888888888998887    9999999999999999999997 332     1233334456888775  8 5544


Q ss_pred             cceEEEEeCHHHHHhhcccccc-------cCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 011777          327 LPLGAVVTTPEIANVMAQKIQF-------NTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDI  397 (477)
Q Consensus       327 ~pig~v~~~~~~~~~~~~~~~~-------~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~  397 (477)
                      ..+|+++++++..+.+.....+       -..+.|..++.+..++|+.+.+  ++..++.+++.++++++|.+......+
T Consensus       205 ~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i  284 (364)
T PLN02651        205 KGVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAKLGGVRV  284 (364)
T ss_pred             CceEEEEEcCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEE
Confidence            6799999998766555432211       1223456667777788887754  334455566666666665442111111


Q ss_pred             cee--e-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-----------------C----CCCEEEEe
Q 011777          398 IGD--V-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-----------------L----HGNVFRIK  453 (477)
Q Consensus       398 ~~~--v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------~----~~~~iRi~  453 (477)
                      ...  . +....++.+.+..         ....++.+.|.+  |.+..+.                 .    ..+.+|++
T Consensus       285 ~~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~L~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S  353 (364)
T PLN02651        285 NGPRDPEKRYPGTLNLSFAY---------VEGESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLG  353 (364)
T ss_pred             ECCCCcccCcCCEEEEEeCC---------CCHHHHHHHhCC--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEE
Confidence            111  0 1112344554421         113466767654  6665442                 0    13689999


Q ss_pred             CCCCCcHHHHH
Q 011777          454 PPMCFTKDDAD  464 (477)
Q Consensus       454 p~~~~t~e~i~  464 (477)
                      ++..+|++|||
T Consensus       354 ~~~~~t~~did  364 (364)
T PLN02651        354 VGRFTTEEEVD  364 (364)
T ss_pred             cCCCCCHHHcC
Confidence            99999999985

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.84  E-value=2e-18  Score=177.11  Aligned_cols=340  Identities=16%  Similarity=0.130  Sum_probs=201.5

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccccc-CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY-LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAML  173 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~-~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~  173 (477)
                      |.-++||..-.++       ..+.+++.+++.....   .| ......+|++.+++++..  +.+++|+||++|+..+++
T Consensus        44 g~p~~D~~tds~t-------~a~~~a~~~a~~~g~~---~Y~~~~g~~~Lreaia~~~~~--~~vv~t~ggt~A~~~~~~  111 (460)
T PRK13238         44 EDVFIDLLTDSGT-------GAMSDRQWAAMMRGDE---AYAGSRSYYRLEDAVKDIFGY--PYTIPTHQGRAAEQILFP  111 (460)
T ss_pred             CCCCCCCCCCCCc-------hhhhHHHHHHHHhCCc---ccCCCCCHHHHHHHHHHHhCC--CcEEECCCHHHHHHHHHH
Confidence            4445676643321       1477777777654322   22 345578899999999854  679999999999999987


Q ss_pred             HHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCC--------CCcCCCCCCCHHHHHHHHHHHHh
Q 011777          174 MARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNP--------DPYHGSFGSDAARYAQDLQDHID  245 (477)
Q Consensus       174 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~le~~i~  245 (477)
                      ...  .+++ ||..++.|..+.......++..           ..++..        +++.+.++      .++|++.++
T Consensus       112 all--~pGD-Vii~~p~~~~~~~~i~~~G~~~-----------v~v~~~~~~~~~~~~~f~g~id------~e~Le~~i~  171 (460)
T PRK13238        112 VLI--KKGD-VVPSNYHFDTTRAHIELNGATA-----------VDLVIDEALDTGSRHPFKGNFD------LEKLEALIE  171 (460)
T ss_pred             HhC--CCCC-EEccCCcccchHHHHHHcCCEE-----------EEEeccccccccccccccCCcC------HHHHHHHHh
Confidence            552  2445 7777776665433222222111           111111        11111122      588888887


Q ss_pred             ccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccC----ccC---CCCCCcccccc------CC
Q 011777          246 FGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG----FGR---TGSHYWGFETQ------GV  312 (477)
Q Consensus       246 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g----fgr---~G~~~~~~~~~------gv  312 (477)
                      ...++++++|+++..+|++|..+.+.+.+++|.++|++||++||+|+++..    |..   .|  .......      +-
T Consensus       172 ~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g--~~~~si~~i~~~~~s  249 (460)
T PRK13238        172 EVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPG--YKDKSIKEIAREMFS  249 (460)
T ss_pred             hcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhcccc--ccCCCHHHHhhhhcc
Confidence            433357888888877777665677899999999999999999999997742    110   01  0000100      11


Q ss_pred             Ccceeeec--ccccCccce-EEEEeC-HHHHHhhcccc---c-ccCCCCcHHH-HHHHHHHHHhhchhhHHHHHHHHHHH
Q 011777          313 IPDIVTMA--KGIGNGLPL-GAVVTT-PEIANVMAQKI---Q-FNTFGGNPVC-SAGGLAVLRVIDKERRQAHCADVGSH  383 (477)
Q Consensus       313 ~pDivt~s--K~lg~G~pi-g~v~~~-~~~~~~~~~~~---~-~~t~~~~~~~-~aaa~a~l~~l~~~~~~~~~~~~~~~  383 (477)
                      ..|+++||  |.+.+  |. |+++++ +++.+.++...   + ..|+++++.. +.|...+|+...+++..+...+..++
T Consensus       250 ~~D~~~~Sg~K~g~~--~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~~~~~~~  327 (460)
T PRK13238        250 YADGLTMSAKKDAMV--NIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYRIGQVEY  327 (460)
T ss_pred             cCcEEEEecccCCCC--cceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhChHHHHHHHHHHHH
Confidence            25666665  32222  32 566666 57887776542   2 3488887666 44444456544345555555556678


Q ss_pred             HHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCc-cHHHHHHH-HHHHHHcCceeeccCC---------------C
Q 011777          384 LLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTP-AKAETAVL-FEKLRELGVLVGKGGL---------------H  446 (477)
Q Consensus       384 l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~-~~~~~~~~-~~~l~~~Gv~v~~~~~---------------~  446 (477)
                      |.+.|++.  .++++  .+..|.++.+++..- ....+ ......++ .+.+.+.||.+.+++.               .
T Consensus       328 l~~~L~~~--G~~~~--~p~Gg~~v~~d~~~~-~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~  402 (460)
T PRK13238        328 LGEGLEEA--GVPIQ--TPAGGHAVFVDAGKF-LPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAP  402 (460)
T ss_pred             HHHHHHHC--CCCeE--ccCCceEEEEEchhc-CCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCc
Confidence            88877763  23332  233456666666321 11111 00012334 4555677999887641               0


Q ss_pred             CCEEEEeCCC-CCcHHHHHHHHHHHHHHHh
Q 011777          447 GNVFRIKPPM-CFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       447 ~~~iRi~p~~-~~t~e~i~~~l~~l~~~l~  475 (477)
                      .+.+||..|- ..|.++++.+.++|.++.+
T Consensus       403 ~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~  432 (460)
T PRK13238        403 AELLRLAIPRRVYTQSHMDYVAEALKAVKE  432 (460)
T ss_pred             cceEEEecccccCCHHHHHHHHHHHHHHHH
Confidence            2689998774 3489999999999988764

>PLN02368 alanine transaminase

Probab=99.84  E-value=2.9e-19  Score=180.89  Aligned_cols=249  Identities=12%  Similarity=0.045  Sum_probs=158.3

Q ss_pred             ChHHHHHHHHHHhhCC--CCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCC
Q 011777          137 HHAIADFAEALASKMP--GNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQG  214 (477)
Q Consensus       137 ~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~  214 (477)
                      .+.++.+++++.+..+  .+.++|++|+|+++++..+++.... .+++.|++.+++|..+.......+.           
T Consensus       110 ~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~-~pGd~Vli~~P~Y~~y~~~~~~~g~-----------  177 (407)
T PLN02368        110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIR-GEKDGVLVPVPQYPLYSATISLLGG-----------  177 (407)
T ss_pred             HHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcC-CCCCEEEEeCCCCccHHHHHHHcCC-----------
Confidence            3556666666665433  4567899999999999998886531 3568899999999988655433322           


Q ss_pred             CeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC--CCCee-EEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777          215 EIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT--SGKVA-GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD  291 (477)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~--~~~~a-~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  291 (477)
                        ..++++......|.-|    .+++++.++...  ..+++ .++++| +|++| .+.+++.+++|.++|++||++||+|
T Consensus       178 --~~v~v~~~~~~~~~~d----~~~le~~i~~~~~~~~~~k~l~l~nP-~NPTG-~v~s~e~l~~l~~~a~~~~~~II~D  249 (407)
T PLN02368        178 --TLVPYYLEESENWGLD----VNNLRQSVAQARSKGITVRAMVIINP-GNPTG-QCLSEANLREILKFCYQERLVLLGD  249 (407)
T ss_pred             --EEEEEecccccCCCCC----HHHHHHHHHHHhhcCCCeEEEEEECC-CCCCC-ccCCHHHHHHHHHHHHHcCCEEEEE
Confidence              2222222111112222    477877775211  11455 566667 55666 5668999999999999999999999


Q ss_pred             CcccCccCCCC-CCccc-ccc-CC------Cccee---eecccc-c-CccceEEEE---eCHHHHHhhcccccccCCCCc
Q 011777          292 EVQTGFGRTGS-HYWGF-ETQ-GV------IPDIV---TMAKGI-G-NGLPLGAVV---TTPEIANVMAQKIQFNTFGGN  354 (477)
Q Consensus       292 Ev~~gfgr~G~-~~~~~-~~~-gv------~pDiv---t~sK~l-g-~G~pig~v~---~~~~~~~~~~~~~~~~t~~~~  354 (477)
                      |+|..|.+.+. .+.++ +.. +.      .+.++   +|||++ + .|||+||++   +++++++.+.... ..+++.|
T Consensus       250 E~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~-~~~~~~~  328 (407)
T PLN02368        250 EVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVA-SIALSPN  328 (407)
T ss_pred             ccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHh-cccCCCC
Confidence            99998866552 12121 110 11      12333   689999 5 699999999   4888888877643 3467788


Q ss_pred             HHHHHHHHHHHHhhc--h----------hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEE
Q 011777          355 PVCSAGGLAVLRVID--K----------ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM  410 (477)
Q Consensus       355 ~~~~aaa~a~l~~l~--~----------~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i  410 (477)
                      .+++.++.++|+.-+  +          +++.+.++++.+.+.+.|++    .+.+....+.|.|+.+
T Consensus       329 ~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~----~~g~~~~~P~Gafy~~  392 (407)
T PLN02368        329 VSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNS----CKNVVCNFTEGAMYSF  392 (407)
T ss_pred             cHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCCeEeCCCCeeeEec
Confidence            899999999886321  0          12334444444445454444    3445556667766643

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.83  E-value=5.1e-18  Score=171.38  Aligned_cols=319  Identities=17%  Similarity=0.141  Sum_probs=195.4

Q ss_pred             CCHHHHHHHHHHHhhcc-cc-ccccC-----ChHHHHHHHHHHhhCCCCC-CEEEEeCChHHHHHHHHHHHHhccCCceE
Q 011777          113 CHPDVLNAIFEQSKLLQ-HA-TTIYL-----HHAIADFAEALASKMPGNL-KVVYFVNSGTEANELAMLMARLSTGNLGM  184 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~-~~-~~~~~-----~~~~~~l~~~La~~~~~~~-~~v~~~~sGseA~~~Al~~ar~~~~~~~i  184 (477)
                      .++.+.+++.+.++... .. ...|.     .+...++++.++++++... ++|+|++|+++++..++...  ..+++.|
T Consensus        12 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~--~~~gd~v   89 (376)
T TIGR01977        12 KPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGL--LKEGDHV   89 (376)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhc--cCCCCEE
Confidence            46799999988887632 11 11121     2456788999999987543 48999999999999988752  2356778


Q ss_pred             EEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCC
Q 011777          185 IALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVG  264 (477)
Q Consensus       185 i~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~  264 (477)
                      ++....|++...........         .|...+.++.......+      .+++++.++    +++++|++..+++++
T Consensus        90 l~~~~~~~~~~~~~~~~~~~---------~g~~~~~v~~~~~~~~d------~~~l~~~~~----~~~~~v~~~~~~n~t  150 (376)
T TIGR01977        90 ITTPMEHNSVARPLECLKEQ---------IGVEITIVKCDNEGLIS------PERIKRAIK----TNTKLIVVSHASNVT  150 (376)
T ss_pred             EECcchhhHHHHHHHHHHHH---------cCcEEEEEecCCCCCcC------HHHHHHhcC----CCCeEEEEECCCCCc
Confidence            87666654432211111000         01222222111111111      477777775    356778887878888


Q ss_pred             CeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeee--cccccCccceEEEEeCHHH-HHh
Q 011777          265 GAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTM--AKGIGNGLPLGAVVTTPEI-ANV  341 (477)
Q Consensus       265 G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~pig~v~~~~~~-~~~  341 (477)
                      |.+.+    +++|.++|+++|+++|+|++++ +|..   .+..+  ...+|++++  .|.+++.-..|+++.+++. +..
T Consensus       151 G~~~~----~~~i~~l~~~~~~~livD~a~~-~g~~---~~~~~--~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~  220 (376)
T TIGR01977       151 GTILP----IEEIGELAQENGIFFILDAAQT-AGVI---PIDMT--ELAIDMLAFTGHKGLLGPQGTGGLYIREGIKLKP  220 (376)
T ss_pred             cccCC----HHHHHHHHHHcCCEEEEEhhhc-cCcc---CCCch--hcCCCEEEecccccccCCCCceEEEEcCCcCcCc
Confidence            87777    8999999999999999999996 4432   22222  234677655  4999865557777776653 111


Q ss_pred             hcccc---c-------------ccCCCCcHHHHHHHHHHHHhhchh---hHHHHHHHHHHHHHHHHHHHHHhCCCce--e
Q 011777          342 MAQKI---Q-------------FNTFGGNPVCSAGGLAVLRVIDKE---RRQAHCADVGSHLLGRLRTLQERHDIIG--D  400 (477)
Q Consensus       342 ~~~~~---~-------------~~t~~~~~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~--~  400 (477)
                      +....   .             ....+.+....++..++++.+.+.   ...++.+++.++++++|.++.. ..+..  +
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~-~~~~~~~~  299 (376)
T TIGR01977       221 LKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINK-VKIYGPAD  299 (376)
T ss_pred             eecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC-eEEeCCCC
Confidence            11100   0             001123456666666788777553   4566777777777777765310 11111  1


Q ss_pred             eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccC------------CCCCEEEEeCCCCCcHHHHHHHH
Q 011777          401 VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGG------------LHGNVFRIKPPMCFTKDDADFLV  467 (477)
Q Consensus       401 v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~------------~~~~~iRi~p~~~~t~e~i~~~l  467 (477)
                      ....+.++.+.+..         ....++.+.|.++ ||.+..+.            ...+.||+++...+|++|++.++
T Consensus       300 ~~~~~~~v~~~~~~---------~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~  370 (376)
T TIGR01977       300 PANRVGVVSFTVEG---------IDSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLL  370 (376)
T ss_pred             ccccCCeEEEEECC---------CCHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHH
Confidence            11134555665521         1245688888887 99887642            13468999999999999999999


Q ss_pred             HHHHH
Q 011777          468 DALDY  472 (477)
Q Consensus       468 ~~l~~  472 (477)
                      ++|++
T Consensus       371 ~~l~~  375 (376)
T TIGR01977       371 EALSE  375 (376)
T ss_pred             HHHhh
Confidence            99975

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PRK14012 cysteine desulfurase; Provisional

Probab=99.82  E-value=4.4e-18  Score=173.42  Aligned_cols=327  Identities=14%  Similarity=0.144  Sum_probs=191.7

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHh--h-cccccc-----c-cCChHHHHHHHHHHhhCCCCCCEEEEeCChHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSK--L-LQHATT-----I-YLHHAIADFAEALASKMPGNLKVVYFVNSGTE  166 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~--~-~~~~~~-----~-~~~~~~~~l~~~La~~~~~~~~~v~~~~sGse  166 (477)
                      +.|+|..+..      ..++.+.+++.+.+.  . ......     . ...+...+++++++++++.+.+.++|++|||+
T Consensus         4 ~iyld~a~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~   77 (404)
T PRK14012          4 PIYLDYSATT------PVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATE   77 (404)
T ss_pred             eEEecCcCCC------CCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHH
Confidence            4688876543      468999999988775  2 111110     0 01244678889999999877778999999999


Q ss_pred             HHHHHHHHHHh--ccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHH
Q 011777          167 ANELAMLMARL--STGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHI  244 (477)
Q Consensus       167 A~~~Al~~ar~--~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i  244 (477)
                      |+..+++.+..  ..+++.||+....|+...........          .|...+.++.......+      .+++++++
T Consensus        78 al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~----------~g~~~~~v~~~~~g~~d------~~~l~~~i  141 (404)
T PRK14012         78 SDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLER----------EGFEVTYLDPQSNGIID------LEKLEAAM  141 (404)
T ss_pred             HHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHh----------CCCEEEEEccCCCCcCC------HHHHHHhc
Confidence            99999886542  23456677766666543222211100          02221111111111111      57888887


Q ss_pred             hccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--cc
Q 011777          245 DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KG  322 (477)
Q Consensus       245 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~  322 (477)
                      +    .++++|++..+++++|.+.+    +++|.++|+++|+++|+|++|+ +|..   .  ++.....+|++++|  |.
T Consensus       142 ~----~~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~vivD~a~~-~g~~---~--~~~~~~~~D~~~~s~~K~  207 (404)
T PRK14012        142 R----DDTILVSIMHVNNEIGVIQD----IAAIGEICRERGIIFHVDAAQS-VGKV---P--IDLSKLKVDLMSFSAHKI  207 (404)
T ss_pred             C----CCCEEEEEECcCCCccchhh----HHHHHHHHHHcCCEEEEEcchh-cCCc---c--cCcccCCCCEEEEehhhc
Confidence            6    35678888888888998777    8999999999999999999997 4322   1  22223457888777  96


Q ss_pred             ccCccceEEEEeCHHHHHhhcccccccC------C-CCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHH
Q 011777          323 IGNGLPLGAVVTTPEIANVMAQKIQFNT------F-GGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQE  393 (477)
Q Consensus       323 lg~G~pig~v~~~~~~~~~~~~~~~~~t------~-~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~  393 (477)
                      +|. .++|+++++++....+.....++.      . +.+.....+..++++.++.  ++..++.+++.+++.+.|++   
T Consensus       208 ~gp-~g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~---  283 (404)
T PRK14012        208 YGP-KGIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKD---  283 (404)
T ss_pred             cCC-CceEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc---
Confidence            653 368998888764333322111111      1 1233333333355554432  23445555556666665544   


Q ss_pred             hCCCceee-----eccce-eEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC---------------------CC
Q 011777          394 RHDIIGDV-----RGRGL-MVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG---------------------LH  446 (477)
Q Consensus       394 ~~~~~~~v-----~g~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------------------~~  446 (477)
                       .+.+...     +..+. .+++.+.        .   ...+...|.  ++.+..+.                     ..
T Consensus       284 -~~~i~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~l~--~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~  349 (404)
T PRK14012        284 -IEEVYLNGDLEQRVPGNLNVSFNYV--------E---GESLIMALK--DLAVSSGSACTSASLEPSYVLRALGLNDELA  349 (404)
T ss_pred             -CCCEEEeCCccccCCCEEEEEEeCc--------C---HHHHHHhCC--CeEEEchhhhCCCCCCCCHHHHHcCCChhhc
Confidence             2322110     11111 2222221        0   123444443  43333220                     11


Q ss_pred             CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          447 GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       447 ~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .+.+|++++...|++|+|++++.|+++++.
T Consensus       350 ~~~iRls~~~~~t~~dvd~~~~~l~~~~~~  379 (404)
T PRK14012        350 HSSIRFSLGRFTTEEEIDYAIELVRKSIGK  379 (404)
T ss_pred             CceEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999988753

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.82  E-value=7e-18  Score=171.94  Aligned_cols=333  Identities=16%  Similarity=0.116  Sum_probs=189.8

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHh-hcc--ccccc-c-CChH---HHH-HHHHHHhhCCCCCCEEEEeCChHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSK-LLQ--HATTI-Y-LHHA---IAD-FAEALASKMPGNLKVVYFVNSGTE  166 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~-~~~--~~~~~-~-~~~~---~~~-l~~~La~~~~~~~~~v~~~~sGse  166 (477)
                      +++|.+..+..     ..+|+|++++.+.+. +..  +.... + ..+.   .++ .++.++++++.+...+ +.+||++
T Consensus        19 ~~~~~~~~~~~-----~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v-~~~sgt~   92 (402)
T cd00378          19 RETLELIASEN-----FTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANV-QPHSGSQ   92 (402)
T ss_pred             HhCeeeeccCC-----cCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceee-ecCCcHH
Confidence            45777766553     248999999987652 221  11111 1 1222   233 3445667776654444 4457899


Q ss_pred             HHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCe--eeecCCCCc-CCCCCCCHHHHHHHHHHH
Q 011777          167 ANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEI--HHVVNPDPY-HGSFGSDAARYAQDLQDH  243 (477)
Q Consensus       167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~le~~  243 (477)
                      |+..+++...  .++++|++.++.|.+.........        ....|.  ..++.+... ...++      .+++++.
T Consensus        93 a~~~~l~~l~--~~Gd~Vl~~~~~~~~~~~~~~~~~--------~~~~g~~~~~~~~~~~~~~~~id------~~~l~~~  156 (402)
T cd00378          93 ANLAVYFALL--EPGDTIMGLDLSHGGHLTHGSFTK--------VSASGKLFESVPYGVDPETGLID------YDALEKM  156 (402)
T ss_pred             HHHHHHHHhc--CCCCEEEEecCccCcccccccccc--------ccccceeEEEecCCcCcccCCcC------HHHHHHH
Confidence            9999988663  356789998888866533211000        000121  112111100 11111      5778887


Q ss_pred             HhccCCCCeeEEEe-cccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcc-cCccCCCCCCccccccCCCccee--ee
Q 011777          244 IDFGTSGKVAGFIA-ETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQ-TGFGRTGSHYWGFETQGVIPDIV--TM  319 (477)
Q Consensus       244 i~~~~~~~~a~vi~-epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-~gfgr~G~~~~~~~~~gv~pDiv--t~  319 (477)
                      +..   .+++++++ .|.+   |...+    +++|.++|++||+++|+||+| .|+...|.....+.    ..|++  ++
T Consensus       157 i~~---~~~~~v~~~~~~~---~~~~~----~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~----~~dv~~~s~  222 (402)
T cd00378         157 ALE---FKPKLIVAGASAY---PRPID----FKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP----GADVVTTTT  222 (402)
T ss_pred             HHh---CCCCEEEecCccc---CCCcC----HHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc----CCcEEEecc
Confidence            752   23445554 5543   22333    899999999999999999996 44433331111112    24654  67


Q ss_pred             cccccCccceEEEEeCH-HHHHhhcccccccCCCCc-HHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHh
Q 011777          320 AKGIGNGLPLGAVVTTP-EIANVMAQKIQFNTFGGN-PVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQER  394 (477)
Q Consensus       320 sK~lg~G~pig~v~~~~-~~~~~~~~~~~~~t~~~~-~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~  394 (477)
                      +|++ +|++.|++++++ ++++.+......+.++.+ +..++++..++..+..   ++..+++.++.+++++.|.++  .
T Consensus       223 sK~l-~G~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g  299 (402)
T cd00378         223 HKTL-RGPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKER--G  299 (402)
T ss_pred             ccCC-CCCCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC--C
Confidence            8999 678899999987 888877554333333332 2333333334433322   345666777777777777653  1


Q ss_pred             CCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeecc----C----CCCCEEEEeCCCC----CcHHH
Q 011777          395 HDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG----G----LHGNVFRIKPPMC----FTKDD  462 (477)
Q Consensus       395 ~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~----~~~~~iRi~p~~~----~t~e~  462 (477)
                      +.... ....+.++++.+....       .....+.+.|.++||.+.+.    .    ...+.+|++++..    ++++|
T Consensus       300 ~~~~~-~~~~~~~v~v~~~~~~-------~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~d  371 (402)
T cd00378         300 FKVVS-GGTDNHLVLVDLRPKG-------ITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEE  371 (402)
T ss_pred             CeEee-cCCCCeEEEEeCCccC-------CCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHH
Confidence            21111 1124667777763211       01235667788899999642    1    1236799987664    47999


Q ss_pred             HHHHHHHHHHHHh
Q 011777          463 ADFLVDALDYSMS  475 (477)
Q Consensus       463 i~~~l~~l~~~l~  475 (477)
                      ++++++.|.+++.
T Consensus       372 i~~~~~~l~~~~~  384 (402)
T cd00378         372 MEEIADFIARALK  384 (402)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=99.82  E-value=2.1e-17  Score=157.62  Aligned_cols=318  Identities=16%  Similarity=0.183  Sum_probs=196.8

Q ss_pred             CCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCc
Q 011777          112 HCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAY  191 (477)
Q Consensus       112 h~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~y  191 (477)
                      |+.|...+|+.+.+......                  ...-+++++.+++++|.||++.+....  .+++..++..|-|
T Consensus       121 ~Gl~~frqa~A~Fm~~~r~~------------------~v~fdP~~~Vv~~G~T~ane~l~fcLa--dpgdafLvPtPyY  180 (471)
T KOG0256|consen  121 HGLPSFRQAVAEFMERARGN------------------RVKFDPERVVVTNGATSANETLMFCLA--DPGDAFLVPTPYY  180 (471)
T ss_pred             cCchHHHHHHHHHHHHHhCC------------------CCccCccceEEecccchhhHHHHHHhc--CCCceeeecCCCC
Confidence            56677777777766552110                  011245789999999999998766443  3778899999999


Q ss_pred             cCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeEEEecccCCCCCeeeC
Q 011777          192 HGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAGFIAETIQGVGGAVEL  269 (477)
Q Consensus       192 hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~  269 (477)
                      .|......       |+     .|+..+|+...-...|.-+.    +.+|.++++.  ...+++++|+...+|+-|. ..
T Consensus       181 ~gfdrdl~-------~r-----Tgveivpv~c~Ss~~f~itv----~alE~A~~~A~~~~~kVkGvlitNPsNPLG~-~~  243 (471)
T KOG0256|consen  181 PGFDRDLR-------WR-----TGVEIVPVHCSSSNGFQITV----EALEAALNQARKLGLKVKGVLITNPSNPLGT-TL  243 (471)
T ss_pred             Ccccccce-------ec-----cCceEEEEEeecCCCccccH----HHHHHHHHHHHHhCCceeEEEEeCCCCCCCC-cc
Confidence            88733221       11     25555554332222333333    4555555422  2457777777766677674 45


Q ss_pred             CchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cc---cCCCccee----eeccccc-CccceEEEEeC-HHHH
Q 011777          270 APGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ET---QGVIPDIV----TMAKGIG-NGLPLGAVVTT-PEIA  339 (477)
Q Consensus       270 ~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~---~gv~pDiv----t~sK~lg-~G~pig~v~~~-~~~~  339 (477)
                      +++.|..+.+.+.++++.+|+||||+|--+....+.++ +.   ....+|-+    ++||-+| .|+|+|.+... +++.
T Consensus       244 ~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~Vv  323 (471)
T KOG0256|consen  244 SPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVV  323 (471)
T ss_pred             CHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHH
Confidence            88889999999999999999999999754443233333 11   11245533    7999999 59999999885 5566


Q ss_pred             HhhcccccccCCCCcHHHHHHHHHHHHh--hch---hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEee
Q 011777          340 NVMAQKIQFNTFGGNPVCSAGGLAVLRV--IDK---ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVT  414 (477)
Q Consensus       340 ~~~~~~~~~~t~~~~~~~~aaa~a~l~~--l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~  414 (477)
                      ....+....+..  ++..|--...-|.-  ..+   .+..++++...+++.++|+++    ++..--++.|+|+|+++..
T Consensus       324 saA~kmssf~~v--Ss~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~l----gI~cl~s~AGlF~wvDlr~  397 (471)
T KOG0256|consen  324 SAATKMSSFGLV--SSQTQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKAL----GIPCLKSNAGLFCWVDLRK  397 (471)
T ss_pred             HHHHHHhhccCC--cHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhc----CCceeecCCeeEEEEEhHH
Confidence            666654433322  33444333333321  101   122345555566666666665    4455567789999999865


Q ss_pred             CCCCCCccHHHHHHHHHHHHHc-CceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          415 DRKEKTPAKAETAVLFEKLREL-GVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      --.+.+-  ..-.++++.+.++ ++.+.||...    .+|+|+++. ...++.++-++++|...+.
T Consensus       398 lL~s~tf--e~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvcFA-n~~~~t~~~am~Ri~~~~~  460 (471)
T KOG0256|consen  398 LLTSLTF--EGELELWERILDNVKLNLSPGSSCHCHEPGWFRVCFA-NMSEETLEVAMRRLKQFLD  460 (471)
T ss_pred             hcCcCCh--HHHHHHHHHHHHhhccccCCCCcceecCCCeEEEEec-cCCHHHHHHHHHHHHHHHH
Confidence            3222221  1223566666666 9999998542    479999753 3455556659999987764

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.81  E-value=1.5e-17  Score=158.04  Aligned_cols=333  Identities=18%  Similarity=0.153  Sum_probs=199.4

Q ss_pred             EeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc
Q 011777           99 LDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS  178 (477)
Q Consensus        99 lD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~  178 (477)
                      +||.|.++.   | .+|++++++.+.-.  ......+.++...++.+++++.++.  ..++|+.|||.||..+|....  
T Consensus         2 ~~f~SDn~~---g-~~~~m~eam~~a~~--~~~~~YG~D~~~~~~e~~~ae~~g~--~a~~Fv~sGT~aN~lal~~~~--   71 (342)
T COG2008           2 IDFRSDNVA---G-PTPEMREALAAANA--VGDDVYGEDPTTNALEQRIAELFGK--EAALFVPSGTQANQLALAAHC--   71 (342)
T ss_pred             CccccCccC---C-CCHHHHHHHHhccc--cCCCCCCCCHHHHHHHHHHHHHhCC--ceEEEecCccHHHHHHHHHhc--
Confidence            577776653   3 68999999977542  1222334577889999999999965  789999999999999998554  


Q ss_pred             cCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeEEE
Q 011777          179 TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAGFI  256 (477)
Q Consensus       179 ~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~vi  256 (477)
                       ++...++....-|-++..+-+..-.         .+....+......+.+.      +++++..|...  +...+..++
T Consensus        72 -~~~~~vi~~~~aHi~~~E~Ga~~~~---------~~~~~~~~~~g~~Gklt------~e~v~~~i~~~d~~~~~~~~~~  135 (342)
T COG2008          72 -QPGESVICHETAHIYTDECGAPEFF---------GGGQKLPIVPGADGKLT------PEDVEAAIRPDDIHHAPTPLAV  135 (342)
T ss_pred             -CCCCeEEEeccccceecccCcHHHH---------cCCceeccCCCCCCCcC------HHHHHHhhcCCCcccCCCceEE
Confidence             4444555555666554433222110         11111111111111122      58888877621  334556666


Q ss_pred             ecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccC--ccCCCCCCccccccCCCcceeeecccccCccceEEEE-
Q 011777          257 AETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG--FGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVV-  333 (477)
Q Consensus       257 ~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g--fgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~-  333 (477)
                      .|...+++| .++|.++|++|.++||+||+.|+.|-+--.  .-..|   -....+.-..|+++++=+-++|+|.|+|+ 
T Consensus       136 ~e~~~te~G-tVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg---~~~~~~~~~~D~v~~~~tK~g~~~~gAiv~  211 (342)
T COG2008         136 LENTATEGG-TVYPLDELEAISAVCKEHGLPLHMDGARLANALVALG---VALKTIKSYVDSVSFCLTKGGGAPVGAIVF  211 (342)
T ss_pred             EeeccCCCc-eecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcC---CCHHHHHhhCCEEEEecccCCcceeeeEEE
Confidence            666556777 567899999999999999999999964210  00011   01122233467776543334567777665 


Q ss_pred             eCHHHHHhhccc--ccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEE
Q 011777          334 TTPEIANVMAQK--IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGME  411 (477)
Q Consensus       334 ~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~  411 (477)
                      +++++++.+...  ..++-+....+..++++.+|+.---.....|..++.++|.+++.+.   .+.....+....++.+.
T Consensus       212 gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~~~~~~Han~mA~~La~~~~~~---~G~~~~~~~~tN~vf~~  288 (342)
T COG2008         212 GNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVWRLAADHANAMAARLAEGLEAK---PGVKLAFPVETNMVFVR  288 (342)
T ss_pred             cCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhhhc---CCceeccCCcccEEEEE
Confidence            588888776542  4556666666767777777652111112233333455565555532   23222333566677776


Q ss_pred             EeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          412 LVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      +...       ..........+...|+++.+.+   ..+||..+..++++||+++++.+++++
T Consensus       289 l~~~-------~i~~l~~~~~~~~~~~~~~~~~---~~vRfvts~a~~~edv~~~~~~~~~~~  341 (342)
T COG2008         289 LPES-------AIEALRLAGALFYRGVLIGAHG---EIVRFVTSWATSEEDVDELVAAIKALL  341 (342)
T ss_pred             CChH-------HHHHHHhhchhheeeeeccCCC---ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence            6321       0122233344445566554422   479999999999999999999998764

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.80  E-value=8.6e-18  Score=153.81  Aligned_cols=330  Identities=19%  Similarity=0.166  Sum_probs=213.1

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR  176 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar  176 (477)
                      ...|+-+-.-+.    +..+.+++|.++.-.-.   ..+.++...+|.++.+++++.  +--+|+.|||..|.+|++.-.
T Consensus        22 ~~vDLRSDTvT~----PTdeMr~am~eA~vgDd---VyGeD~tt~rLE~~vA~l~GK--EAgLFv~SGTmgNllaIm~Hc   92 (384)
T KOG1368|consen   22 RSVDLRSDTVTV----PTDEMRRAMAEASVGDD---VYGEDPTTNRLEQRVAELFGK--EAGLFVPSGTMGNLLAIMVHC   92 (384)
T ss_pred             eccccccccccC----ChHHHHHHHhhcccCcc---cccCCccHHHHHHHHHHHhCc--cceeeecccccccHHHHHHHh
Confidence            345666655432    44678888777543211   123456788999999999854  678999999999999999765


Q ss_pred             hccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHh----ccCCCCe
Q 011777          177 LSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHID----FGTSGKV  252 (477)
Q Consensus       177 ~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~----~~~~~~~  252 (477)
                      ...|...|+-....-|-+..+.++.-+           ++...+..+..      |+...++++|+.+.    ..+...+
T Consensus        93 ~~rg~eii~gd~~HI~~~E~gg~s~l~-----------gv~~~tv~~e~------dgtm~ledIe~~ir~~~GD~H~p~T  155 (384)
T KOG1368|consen   93 HQRGSEIIVGDRAHIHRYEQGGISQLA-----------GVHVRTVKNEN------DGTMDLEDIEAAIRVPKGDCHMPPT  155 (384)
T ss_pred             cCCCceEEeccchheeehhccChhhhc-----------cceeEeeeeCC------CCeeeHHHHHHhhcCCCCCccCCCc
Confidence            533433333333344545444444322           23322221111      11112689999887    2345578


Q ss_pred             eEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCcc---CCCCCCccccccCCCcce--eeecccccCcc
Q 011777          253 AGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG---RTGSHYWGFETQGVIPDI--VTMAKGIGNGL  327 (477)
Q Consensus       253 a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfg---r~G~~~~~~~~~gv~pDi--vt~sK~lg~G~  327 (477)
                      ..|.+|..+++.|..+.|.+|+.+|.++|++||+.|+.|-+.- |-   -.|   -+...+.-..|.  +||||++|.  
T Consensus       156 ~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi-~NAavasg---V~vk~i~~~fDSVsiCLSKglgA--  229 (384)
T KOG1368|consen  156 KLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARI-FNAAVASG---VPVKKICSAFDSVSICLSKGLGA--  229 (384)
T ss_pred             eEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhh-hhHHHHcC---CCHHHHHHhhhhhhhhhhccCCC--
Confidence            9999999777666577899999999999999999999996422 10   000   001111122454  479999975  


Q ss_pred             ce-EEEEeCHHHHHhhccc--ccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCC-Cceeee-
Q 011777          328 PL-GAVVTTPEIANVMAQK--IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHD-IIGDVR-  402 (477)
Q Consensus       328 pi-g~v~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~-~~~~v~-  402 (477)
                      |+ +.+++++++++..+..  ..++.+....+.++|++.+|+.  ....+.+-.++...+.+.++..    + +...+. 
T Consensus       230 PVGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~--~~~~L~~dHk~A~~lAe~~~~~----~~i~v~v~a  303 (384)
T KOG1368|consen  230 PVGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALDE--NVPLLRADHKRAKELAEYINTP----EEIRVEVPA  303 (384)
T ss_pred             CcccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHhccc----cceeeecch
Confidence            45 4678899988765432  3566677778888999988873  2234555555665565555532    2 223333 


Q ss_pred             ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          403 GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       403 g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      -+..|..+.+...+       ...+.+.+.+.+.||++..+.  ...+|+.+...+|+++++..+..+.+.
T Consensus       304 ~etNiv~~~l~q~~-------~~~~~l~~~~~k~gi~lm~~~--s~r~Rivlh~Qvt~~~ve~~~~~~~k~  365 (384)
T KOG1368|consen  304 VETNIVNMVLCQAR-------LTAEELCKFLEKNGILLMGGA--SRRIRIVLHHQVTDEDVEYVKSVLSKK  365 (384)
T ss_pred             hhcceeeeeccccc-------CCHHHHHHHHHHCCeEEeecc--ccceEEEEEEecCHHHHHHHHHHHHHH
Confidence            45667777664322       236788999999999998764  345899999999999999999999543

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.79  E-value=7.5e-18  Score=168.09  Aligned_cols=286  Identities=19%  Similarity=0.082  Sum_probs=164.9

Q ss_pred             ChHHHHHHHHHHhhCCCC--CCEEEEeCChHHHHHHHHHHHHhc-----------cCCceEEEEccCccCCccccccccc
Q 011777          137 HHAIADFAEALASKMPGN--LKVVYFVNSGTEANELAMLMARLS-----------TGNLGMIALRNAYHGGSSGTIGLTA  203 (477)
Q Consensus       137 ~~~~~~l~~~La~~~~~~--~~~v~~~~sGseA~~~Al~~ar~~-----------~~~~~ii~~~~~yhG~~~~~~~~~~  203 (477)
                      .+..++++++++++++.+  .+.++||+|||+|+..+++.++..           .+.+.+|+.....|..........+
T Consensus        37 ~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g  116 (345)
T cd06450          37 TEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLD  116 (345)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHHh
Confidence            455667777788887653  347999999999999999988642           1223455555555554322222111


Q ss_pred             CCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHH
Q 011777          204 LNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIV  281 (477)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~  281 (477)
                      .          .+..++..  .....  |    .++|++.++..  ...++++|++...++++|.+.+    +++|.++|
T Consensus       117 ~----------~~~~v~~~--~~~~~--d----~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~----~~~i~~~~  174 (345)
T cd06450         117 V----------KVRLVPVD--EDGRM--D----PEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP----LEEIADLA  174 (345)
T ss_pred             c----------CeEEeeeC--CCCCc--C----HHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC----HHHHHHHH
Confidence            1          11222211  11111  1    47788777621  1124555555555566776655    89999999


Q ss_pred             HHhCcEEEEcCcccCccCCCCCCccccccCC-Cccee--eecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHH
Q 011777          282 RKAGGVCIADEVQTGFGRTGSHYWGFETQGV-IPDIV--TMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCS  358 (477)
Q Consensus       282 ~~~gillI~DEv~~gfgr~G~~~~~~~~~gv-~pDiv--t~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~  358 (477)
                      ++||+++|+|++|.++.......... ..+. ..|.+  +++|.++++.++|+++.+                   .+++
T Consensus       175 ~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~-------------------~~~~  234 (345)
T cd06450         175 EKYDLWLHVDAAYGGFLLPFPEPRHL-DFGIERVDSISVDPHKYGLVPLGCSAVLVR-------------------ALKL  234 (345)
T ss_pred             HHhCCeEEEechhhHHHhhChhhHHH-hcCccccCEEEEchhHhhCCCcchHHHHHH-------------------HHHH
Confidence            99999999999998653211000000 0111 34644  567988877778876555                   2333


Q ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcC
Q 011777          359 AGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELG  437 (477)
Q Consensus       359 aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~G  437 (477)
                      .+++..+....-++..++..++.+++.+.|.++    +.+..+ ...+.++.+.+....   . ......++.+.|.++|
T Consensus       235 ~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~iv~f~~~~~~---~-~~~~~~~i~~~L~~~g  306 (345)
T cd06450         235 WATLRRFGRDGYGEHIDRIVDLAKYLAELIRAD----PGFELLGEPNLSLVCFRLKPSV---K-LDELNYDLSDRLNERG  306 (345)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCceeEEEEEECCcc---h-hhHHHHHHHHHHHhcC
Confidence            333333322111345566666666666666553    222111 223445555552110   0 0123467888999997


Q ss_pred             ceeeccCC--CCCEEEEeCCCCC-cHHHHHHHHHHHHH
Q 011777          438 VLVGKGGL--HGNVFRIKPPMCF-TKDDADFLVDALDY  472 (477)
Q Consensus       438 v~v~~~~~--~~~~iRi~p~~~~-t~e~i~~~l~~l~~  472 (477)
                      +++.+...  .++++|+++...+ |++|++++++.|++
T Consensus       307 ~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         307 GWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER  344 (345)
T ss_pred             CEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence            65544322  2568999998765 99999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.79  E-value=2.2e-16  Score=160.78  Aligned_cols=321  Identities=13%  Similarity=0.048  Sum_probs=186.8

Q ss_pred             CCHHHHHHHHHHH-hhcccc--cccc--CChHHHHHHH----HHHhhCCCCCCEE-EEeCChHHHHHHHHHHHHhccCCc
Q 011777          113 CHPDVLNAIFEQS-KLLQHA--TTIY--LHHAIADFAE----ALASKMPGNLKVV-YFVNSGTEANELAMLMARLSTGNL  182 (477)
Q Consensus       113 ~~p~v~~Av~~~l-~~~~~~--~~~~--~~~~~~~l~~----~La~~~~~~~~~v-~~~~sGseA~~~Al~~ar~~~~~~  182 (477)
                      .||+|++|+...+ .+....  ...+  .++...+|.+    +++++++.  +.+ ++++||+.||.+++...  ..+++
T Consensus        40 ~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~--~~alv~~~SG~~A~~~~l~al--~~~GD  115 (416)
T PRK13034         40 TSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGC--DYANVQPHSGSQANGAVYLAL--LKPGD  115 (416)
T ss_pred             CCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCC--CceEEecCCcHHHHHHHHHHh--cCCCC
Confidence            4899999999885 554321  1111  1567788887    99999865  345 56799999999998765  33667


Q ss_pred             eEEEEccCccCC-cccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEe-ccc
Q 011777          183 GMIALRNAYHGG-SSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIA-ETI  260 (477)
Q Consensus       183 ~ii~~~~~yhG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~-epi  260 (477)
                      .|++...+|.+. ..+........         .+....+.... .....|    .+++++.++.   .++++|++ +++
T Consensus       116 ~Vl~~~~~~~~~~~~g~~~~~~~~---------~~~~~~~~~~~-~~~~~d----~~~le~~l~~---~~~klVi~~~~~  178 (416)
T PRK13034        116 TILGMSLSHGGHLTHGAKVSLSGK---------WYNAVQYGVDR-LTGLID----YDEVEELAKE---HKPKLIIAGFSA  178 (416)
T ss_pred             EEEEcCccceeeeecCCcceeccc---------eeeeEEccccc-ccCCcC----HHHHHHHHhh---cCCeEEEECCCc
Confidence            788776666542 11211100000         00000000000 001111    4778887752   23567777 455


Q ss_pred             CCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccCccceEEEEeCHH-
Q 011777          261 QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGNGLPLGAVVTTPE-  337 (477)
Q Consensus       261 ~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G~pig~v~~~~~-  337 (477)
                      .+   ...+    +++|.++|++||++||+|++|+ +|-.+.... ....+ ..|++  +++|+++|+. -|+++++++ 
T Consensus       179 ~g---~~~d----l~~l~~la~~~g~~livD~Aha-~G~~~~g~~-~~~~~-~~Di~~~s~~K~l~g~~-GG~v~~~~~~  247 (416)
T PRK13034        179 YP---RELD----FARFREIADEVGALLMVDMAHI-AGLVAAGEH-PNPFP-HAHVVTTTTHKTLRGPR-GGMILTNDEE  247 (416)
T ss_pred             cc---cccC----HHHHHHHHHHcCCEEEEeCccc-ccCcccCCC-CCCCC-CceEEEEeCcccCCCCC-CeEEEECcHH
Confidence            44   3334    8999999999999999999986 554331110 11111 25666  5679996422 267777654 


Q ss_pred             HHHhhcccccccCC-CCcHHHHHHH-HHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEe
Q 011777          338 IANVMAQKIQFNTF-GGNPVCSAGG-LAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELV  413 (477)
Q Consensus       338 ~~~~~~~~~~~~t~-~~~~~~~aaa-~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~  413 (477)
                      +.+.+......+.. +.++...+++ .+.++.++.  .++.+++.++.++|+++|+++  .++.... .....+..+.+.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~--G~~~~~~-~~~t~i~~v~~~  324 (416)
T PRK13034        248 IAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER--GYDLVSG-GTDNHLLLVDLR  324 (416)
T ss_pred             HHHHHHhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc--CCEeccC-CCCCcEEEEEcC
Confidence            44444432222211 2223333333 344444432  345788889999999988765  2222211 124555566653


Q ss_pred             eCCCCCCccHHHHHHHHHHHHHcCceeeccC--------CCCCEEEEeCCC----CCcHHHHHHHHHHHHHHHh
Q 011777          414 TDRKEKTPAKAETAVLFEKLRELGVLVGKGG--------LHGNVFRIKPPM----CFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------~~~~~iRi~p~~----~~t~e~i~~~l~~l~~~l~  475 (477)
                      ...       .....+.+.|.++||++...+        .....+|++++.    .++++|++++++.|++++.
T Consensus       325 ~~~-------~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~  391 (416)
T PRK13034        325 PKG-------LSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLD  391 (416)
T ss_pred             CCC-------CCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            221       123456678888999987421        113579998888    7789999999999998875

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.79  E-value=2.1e-16  Score=161.81  Aligned_cols=333  Identities=14%  Similarity=0.079  Sum_probs=188.0

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhh-cc--cccccc--CChHHHHH----HHHHHhhCCCCCCEEEEeCChHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKL-LQ--HATTIY--LHHAIADF----AEALASKMPGNLKVVYFVNSGTE  166 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~-~~--~~~~~~--~~~~~~~l----~~~La~~~~~~~~~v~~~~sGse  166 (477)
                      +.+|++.++...     .+|+|.+|+.+.+.. ..  +....+  ..+....+    ++++++.++.+...|++ +||++
T Consensus        25 ~~~~~l~~~~n~-----~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i~~-~sgt~   98 (416)
T PRK00011         25 EEHIELIASENF-----VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYANVQP-HSGSQ   98 (416)
T ss_pred             hcCeeeecccCc-----CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceeeec-CCchH
Confidence            455776665532     489999998776532 11  111111  11223333    34788888765544544 57899


Q ss_pred             HHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777          167 ANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF  246 (477)
Q Consensus       167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~  246 (477)
                      |+..+++..  ..+++.|++..+.|.+..........        ...+...+..+.... .+..|    .++++++++.
T Consensus        99 al~~~l~~l--~~~gd~Vl~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~-~~~~d----~~~l~~~i~~  163 (416)
T PRK00011         99 ANAAVYFAL--LKPGDTILGMDLAHGGHLTHGSPVNF--------SGKLYNVVSYGVDEE-TGLID----YDEVEKLALE  163 (416)
T ss_pred             HHHHHHHHh--cCCCCEEEEeccccCCcccccccccc--------ccceeeEeecCcCcc-cCCcC----HHHHHHHHHh
Confidence            999988765  23567888888887654221110000        001112221111100 01111    4788888762


Q ss_pred             cCCCCeeEEEec-ccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCC--CCCCccccccCCCccee--eecc
Q 011777          247 GTSGKVAGFIAE-TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRT--GSHYWGFETQGVIPDIV--TMAK  321 (477)
Q Consensus       247 ~~~~~~a~vi~e-pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~--G~~~~~~~~~gv~pDiv--t~sK  321 (477)
                         .++++|++. ++.   |...+    +++|.++|++||+++|+||+|. +|..  |.....+   + ..|++  +++|
T Consensus       164 ---~~~k~v~~~~~~~---~~~~~----~~~I~~la~~~~~~livD~a~~-~g~~~~g~~~~~~---~-~~di~~~S~~K  228 (416)
T PRK00011        164 ---HKPKLIIAGASAY---SRPID----FKRFREIADEVGAYLMVDMAHI-AGLVAAGVHPSPV---P-HADVVTTTTHK  228 (416)
T ss_pred             ---cCCCEEEECCCcC---CCccC----HHHHHHHHHHcCCEEEEECcch-hcccccCccCCCC---C-CCcEEEecCCc
Confidence               245566663 432   33334    8999999999999999999985 3322  2111111   1 34655  5789


Q ss_pred             cccCccceEEEEeC-HHHHHhhcccccccCCCCc-HHHHHHHHHH-HHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCC
Q 011777          322 GIGNGLPLGAVVTT-PEIANVMAQKIQFNTFGGN-PVCSAGGLAV-LRVIDK--ERRQAHCADVGSHLLGRLRTLQERHD  396 (477)
Q Consensus       322 ~lg~G~pig~v~~~-~~~~~~~~~~~~~~t~~~~-~~~~aaa~a~-l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~  396 (477)
                      ++ +|++.|+++++ +++.+.+......++++.. ...+++...+ ++.+++  ++..++.+++.+++++.|+++  ...
T Consensus       229 ~l-~g~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~  305 (416)
T PRK00011        229 TL-RGPRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAER--GFR  305 (416)
T ss_pred             CC-CCCCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC--CCe
Confidence            98 46788999995 6888877654333333322 2233333333 333322  456777888888888888764  111


Q ss_pred             CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC--------CCCCEEEEeCC----CCCcHHHHH
Q 011777          397 IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG--------LHGNVFRIKPP----MCFTKDDAD  464 (477)
Q Consensus       397 ~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------~~~~~iRi~p~----~~~t~e~i~  464 (477)
                      ... -...+.++++.+...       ......+.+.|.++||.+..+.        ...+.+|+...    ..++++|++
T Consensus       306 ~~~-~~~~~~~~~i~~~~~-------~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~  377 (416)
T PRK00011        306 VVS-GGTDNHLVLVDLRSK-------GLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMK  377 (416)
T ss_pred             eee-cCCCCeEEEEeCccc-------CCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHH
Confidence            111 012345666665311       0123467888889999987321        11346888532    256799999


Q ss_pred             HHHHHHHHHHh
Q 011777          465 FLVDALDYSMS  475 (477)
Q Consensus       465 ~~l~~l~~~l~  475 (477)
                      ++++.|++++.
T Consensus       378 ~l~~~l~~~~~  388 (416)
T PRK00011        378 EIAELIADVLD  388 (416)
T ss_pred             HHHHHHHHHHh
Confidence            99999998865

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.79  E-value=2.3e-16  Score=158.03  Aligned_cols=321  Identities=14%  Similarity=0.106  Sum_probs=188.0

Q ss_pred             CEEEeecCCcccccCCCC--CHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHC--HPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAML  173 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~--~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~  173 (477)
                      +.+|+. +|.. .+||-+  +++|++++.+.++.+.     ...+...+++++++++++.  +.+++++|+|+|+.++++
T Consensus         8 ~~~ina-~g~~-t~~g~s~~~~~v~~a~~~~~~~~~-----~~~~~~~~~~~~~a~~~g~--~~~~~~~g~t~al~~al~   78 (363)
T TIGR01437         8 KKVINA-SGKM-TILGVSTVSDEVADAQKRGAQNYF-----EIKELVNKTGEYIANLLGV--EDAVIVSSASAGIAQSVA   78 (363)
T ss_pred             ceEEEC-CcEe-ecCCCCCCCHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHhhCC--CeEEEEcCHHHHHHHHHH
Confidence            345553 3333 567765  8999999999876421     2346688999999999854  578999999999999998


Q ss_pred             HHHhccCCc---------------eEEEEccCccCCc---ccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHH
Q 011777          174 MARLSTGNL---------------GMIALRNAYHGGS---SGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAAR  235 (477)
Q Consensus       174 ~ar~~~~~~---------------~ii~~~~~yhG~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (477)
                      ....  +++               .||+..+.|+.+.   ...+..            .|...+..+..  ...  |   
T Consensus        79 al~~--~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~------------~g~~~v~v~~~--~~~--d---  137 (363)
T TIGR01437        79 AVIT--RGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRL------------GGGKVVEAGYA--NEC--S---  137 (363)
T ss_pred             HHhc--CCCcchhhcccccccccceEEEECccchhcCCchHHHHHh------------cCCeEEEEcCC--CCC--C---
Confidence            7643  333               5666555444321   011111            12222222111  111  1   


Q ss_pred             HHHHHHHHHhccCCCCeeEEE-ecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCc
Q 011777          236 YAQDLQDHIDFGTSGKVAGFI-AETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIP  314 (477)
Q Consensus       236 ~~~~le~~i~~~~~~~~a~vi-~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~p  314 (477)
                       .++++++|.    +++++++ ++..++..|.+.+    +++|.++|++||+++|+|++|. +  .   ......+|  .
T Consensus       138 -~~~le~ai~----~~t~ai~~v~~~~~~~g~~~~----~~~i~~~a~~~gi~vivD~a~~-~--~---~~~~~~~g--~  200 (363)
T TIGR01437       138 -AEQLEAAIT----EKTAAILYIKSHHCVQKSMLS----VEDAAQVAQEHNLPLIVDAAAE-E--D---LQKYYRLG--A  200 (363)
T ss_pred             -HHHHHHhcC----hhceEEEEEecCCCCcCCcCC----HHHHHHHHHHcCCeEEEECCCC-C--c---hHHHHHcC--C
Confidence             588888886    3445444 4544445565666    8999999999999999999996 1  1   11111123  4


Q ss_pred             ceeee--cccccCccceEEEEeCHHHHHhhccccccc--CCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHH
Q 011777          315 DIVTM--AKGIGNGLPLGAVVTTPEIANVMAQKIQFN--TFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRL  388 (477)
Q Consensus       315 Divt~--sK~lg~G~pig~v~~~~~~~~~~~~~~~~~--t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L  388 (477)
                      |++++  +|.++ |++.|++++++++++.+....++.  .+......+++..++++.+.+  .+..+...++.++++++|
T Consensus       201 D~~~~S~~K~l~-gp~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L  279 (363)
T TIGR01437       201 DLVIYSGAKAIE-GPTSGLVLGKKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIEAL  279 (363)
T ss_pred             CEEEEeCCcccC-CCceEEEEEcHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHH
Confidence            77765  59885 556899999988887664322111  111111233444445554432  233344444555677766


Q ss_pred             HHHHHhCCCceee---eccce---eEEEEEeeCCCCCCccHHHHHHHHHHHHHcC--ceeeccCCCCCEEEEeCCCCCcH
Q 011777          389 RTLQERHDIIGDV---RGRGL---MVGMELVTDRKEKTPAKAETAVLFEKLRELG--VLVGKGGLHGNVFRIKPPMCFTK  460 (477)
Q Consensus       389 ~~l~~~~~~~~~v---~g~g~---~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~G--v~v~~~~~~~~~iRi~p~~~~t~  460 (477)
                      .++    +.+...   ...+.   ...+.+....     ......++.+.|.++|  |..++-....+.+|+.|.. .++
T Consensus       280 ~~i----~g~~~~~~~~~~~~~~~~~~v~~~~~~-----~g~~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~~-~~~  349 (363)
T TIGR01437       280 NTL----KGVSASIVQDEAGRDIARAEIRFDESE-----LGMTAADVVQALRQGEPAIYTRGYKANEGIIEIDPRS-VTG  349 (363)
T ss_pred             hcC----CCeEEEEecCCCCCcCceEEEEEeccC-----CCCCHHHHHHHHhcCCCCEEEeeeeecCCeEEEEeec-CCH
Confidence            654    222111   11111   1223332210     0112467888998877  6665433335688999875 679


Q ss_pred             HHHHHHHHHHHHHH
Q 011777          461 DDADFLVDALDYSM  474 (477)
Q Consensus       461 e~i~~~l~~l~~~l  474 (477)
                      +|++.++++|++.+
T Consensus       350 ~e~~~~~~~l~~~~  363 (363)
T TIGR01437       350 GQLDIIVERIREIV  363 (363)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999998753

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.78  E-value=2.5e-17  Score=165.60  Aligned_cols=291  Identities=15%  Similarity=0.119  Sum_probs=184.3

Q ss_pred             ccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCC
Q 011777          132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI  211 (477)
Q Consensus       132 ~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  211 (477)
                      ..++.++...+|+++|+++.+.  +.+++++||++|+..+++...  .+++.|++....|++..........        
T Consensus        34 y~r~~~p~~~~le~~la~l~g~--~~a~~~~sG~~Ai~~~l~~l~--~~gd~Vl~~~~~y~~~~~~~~~~~~--------  101 (369)
T cd00614          34 YSRIGNPTVDALEKKLAALEGG--EAALAFSSGMAAISTVLLALL--KAGDHVVASDDLYGGTYRLFERLLP--------  101 (369)
T ss_pred             eECCCChhHHHHHHHHHHHHCC--CCEEEEcCHHHHHHHHHHHHc--CCCCEEEECCCCcchHHHHHHHHHh--------
Confidence            4456788899999999999864  568889999999999998663  3567788888888775322111100        


Q ss_pred             CCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777          212 PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD  291 (477)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  291 (477)
                       ..|+....++.      + +    .+++++.++    .++++|++|.++++.|.+.+    +++|.++|++||+++|+|
T Consensus       102 -~~g~~~~~v~~------~-d----~~~l~~~i~----~~~~~v~~e~~~np~g~~~d----l~~i~~la~~~g~~livD  161 (369)
T cd00614         102 -KLGIEVTFVDP------D-D----PEALEAAIK----PETKLVYVESPTNPTLKVVD----IEAIAELAHEHGALLVVD  161 (369)
T ss_pred             -hcCeEEEEeCC------C-C----HHHHHHhcC----CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEE
Confidence             01222222111      1 1    467777775    36789999999999998776    999999999999999999


Q ss_pred             CcccCccCCCCCCccccccCCCccee--eecccccC-c-cceEEEEeCH-HHHHhhcccccccCCCCcHHHHHHHHHHHH
Q 011777          292 EVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-G-LPLGAVVTTP-EIANVMAQKIQFNTFGGNPVCSAGGLAVLR  366 (477)
Q Consensus       292 Ev~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pig~v~~~~-~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~  366 (477)
                      +++... ...      .......|++  +++|.++| | .+.|++++++ ++++.+...........+|+.+++++..|+
T Consensus       162 ~t~~~~-~~~------~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~  234 (369)
T cd00614         162 NTFATP-YLQ------RPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLK  234 (369)
T ss_pred             CCCcch-hcC------ChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCC
Confidence            998632 111      1112345666  68899986 4 7889999987 887777654332334566777777666665


Q ss_pred             hhchhhHHHHHHHHHHHHHHHHHHHHH----hCCCce----------eeeccceeEEEEEeeCCCCCCccHHHHHHHHHH
Q 011777          367 VIDKERRQAHCADVGSHLLGRLRTLQE----RHDIIG----------DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEK  432 (477)
Q Consensus       367 ~l~~~~~~~~~~~~~~~l~~~L~~l~~----~~~~~~----------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~  432 (477)
                      .+  +...++..++.+++.+.|++...    .||...          ...+.|.++.+++..       ......++.+.
T Consensus       235 tl--~~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~-------~~~~~~~f~~~  305 (369)
T cd00614         235 TL--PLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKG-------GLEAAKKFLNA  305 (369)
T ss_pred             CH--HHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCC-------CHHHHHHHHHc
Confidence            33  23456666677777777765310    022110          123568888888742       12234445544


Q ss_pred             HHHcCcee----------ecc---------------CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          433 LRELGVLV----------GKG---------------GLHGNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       433 l~~~Gv~v----------~~~---------------~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      |.--.+..          .+.               |...+.+|++..+    |+.+.+++-|++++
T Consensus       306 l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~liR~svGl----E~~~dl~~dl~~al  368 (369)
T cd00614         306 LKLFSLAVSLGGVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVGI----EDVEDLIADLEQAL  368 (369)
T ss_pred             CCcceEcccCCCCceeeeCCcccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence            43211110          010               1124689997665    67777888888776

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.78  E-value=1.9e-16  Score=152.27  Aligned_cols=296  Identities=14%  Similarity=0.095  Sum_probs=198.3

Q ss_pred             EEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHH
Q 011777          157 VVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARY  236 (477)
Q Consensus       157 ~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (477)
                      .+++|+|.+.+.+.+++++..  ..+.|++-+.+|.+.......             .|+..+|++....   +.+    
T Consensus       126 diiit~G~t~~l~~~l~~~~N--~gd~vlie~~ty~~AL~s~~a-------------~gv~~ipv~md~~---Gi~----  183 (472)
T KOG0634|consen  126 DIIITNGNTDGLFKVLRTLIN--RGDHVLIEEYTYPSALQSMEA-------------LGVKIIPVKMDQD---GID----  183 (472)
T ss_pred             eEEEecCCchHHHHHHHHhhc--CCCceEEecccchHHHHhccc-------------cCceEEeccccCC---CCC----
Confidence            699999999999999998865  556777777777654332222             2455555544211   111    


Q ss_pred             HHHHHHHHhccCC-----CCeeEEEecc-cCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCC---CC-----
Q 011777          237 AQDLQDHIDFGTS-----GKVAGFIAET-IQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRT---GS-----  302 (477)
Q Consensus       237 ~~~le~~i~~~~~-----~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~---G~-----  302 (477)
                      .+.|++++.....     .+.....+-| -||++|. ..+.+--++|.+||+||++++|.||+|--+-..   ++     
T Consensus       184 pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~-tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~  262 (472)
T KOG0634|consen  184 PESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGN-TLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELES  262 (472)
T ss_pred             HHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCC-ccCHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccC
Confidence            4888888875432     2356666777 7788885 457888899999999999999999998744332   10     


Q ss_pred             --------------CCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhh
Q 011777          303 --------------HYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVI  368 (477)
Q Consensus       303 --------------~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l  368 (477)
                                    .+...+..|.+..+-+|||-++.|+|+||+.+++-+++.........|-+.+.+++....+.|+..
T Consensus       263 p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~~~l~ril~~ae~~t~~pSg~sq~iv~a~l~~w  342 (472)
T KOG0634|consen  263 PAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNSLFLKRILDLAEVATSGPSGFSQGIVYAMLKRW  342 (472)
T ss_pred             ccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCHHHHHHHhhhcceeecCcccccHHHHHHHHHHH
Confidence                          111223334444455899999999999999999988877766666677778888888888888877


Q ss_pred             chhhHHHHHHHH---HHHHHHHHHHHHHhC-CC---ceeeeccceeEEEEEeeCC-CCCCccHHHHHHHHHHHHHcCcee
Q 011777          369 DKERRQAHCADV---GSHLLGRLRTLQERH-DI---IGDVRGRGLMVGMELVTDR-KEKTPAKAETAVLFEKLRELGVLV  440 (477)
Q Consensus       369 ~~~~~~~~~~~~---~~~l~~~L~~l~~~~-~~---~~~v~g~g~~~~i~~~~~~-~~~~~~~~~~~~~~~~l~~~Gv~v  440 (477)
                      .++++++.+.++   ....+..+-..+.++ |.   ...++-.|+|+|+++.-.. +.+..-....+.+...+.++||.+
T Consensus       343 gqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~  422 (472)
T KOG0634|consen  343 GQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKKSINQIEEIIFIKAVKNGVKL  422 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccccccccchHHHHHHHHHHHHHCCeEE
Confidence            776554444443   333344333334444 32   2334556999999985111 111111122345667888999999


Q ss_pred             eccCCC--------CC-EEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          441 GKGGLH--------GN-VFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       441 ~~~~~~--------~~-~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .+|..+        +. ++|++.++. +.|++++++++|..++++
T Consensus       423 v~G~~F~v~p~~s~~kiffRls~a~a-~~e~l~~g~~rf~~~ike  466 (472)
T KOG0634|consen  423 VCGSWFMVDPESSWSKIFFRLSIAFA-EPEKLDEGIERFGSVIKE  466 (472)
T ss_pred             ecCceeEEcCccCCCcceEEEEeecC-CHHHHHHHHHHHHHHHHH
Confidence            887321        23 899988765 678999999999998874

>PLN02242 methionine gamma-lyase

Probab=99.78  E-value=6.2e-17  Score=164.37  Aligned_cols=259  Identities=15%  Similarity=0.089  Sum_probs=163.7

Q ss_pred             ccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCC
Q 011777          132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI  211 (477)
Q Consensus       132 ~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  211 (477)
                      ++++.++...+|+++|+++.+.  +.+++++||++|+..++.....  .++.|++..+.|.+..........        
T Consensus        70 Y~r~~~Pt~~~LE~~lA~l~g~--~~~l~~~sG~~Ai~~al~al~~--~GD~Vl~~~~~Y~~~~~~~~~~~~--------  137 (418)
T PLN02242         70 YSRHFNPTVLNLGRQMAALEGT--EAAYCTASGMSAISSVLLQLCS--SGGHVVASNTLYGGTHALLAHFLP--------  137 (418)
T ss_pred             ccCCCChhHHHHHHHHHHHhCC--CeEEEEccHHHHHHHHHHHHhC--CCCEEEEcCCcHHHHHHHHHHhhh--------
Confidence            4456788999999999999854  6788999999999999986533  567888888877554221110000        


Q ss_pred             CCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777          212 PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD  291 (477)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  291 (477)
                      ...|+....++.      . |    .++++++++   ++++++|++|.++|++|.+.+    +++|.++|++||+++|+|
T Consensus       138 ~~~G~~~~~~d~------~-d----~e~l~~~i~---~~~tklV~lesp~NPtG~v~d----l~~I~~la~~~gi~livD  199 (418)
T PLN02242        138 RKCNITTTFVDI------T-D----LEAVKKAVV---PGKTKVLYFESISNPTLTVAD----IPELARIAHEKGVTVVVD  199 (418)
T ss_pred             hccCceEEEcCC------C-C----HHHHHHhcC---cCCCEEEEEecCCCCCCcccC----HHHHHHHHHHhCCEEEEE
Confidence            001222221111      0 1    477777775   225789999998888887775    999999999999999999


Q ss_pred             CcccCccCCCCCCccccccCCCcceeeecccccC-ccc-eEEEEeCHHHHHhhcccccc--cCCCCcHHHHHHHHHHHHh
Q 011777          292 EVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGN-GLP-LGAVVTTPEIANVMAQKIQF--NTFGGNPVCSAGGLAVLRV  367 (477)
Q Consensus       292 Ev~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~-G~p-ig~v~~~~~~~~~~~~~~~~--~t~~~~~~~~aaa~a~l~~  367 (477)
                      |+|+.+.. .     ...+|...-+.++||.+++ |.+ .|++++++++++.+......  ..++..+..+.|++..+..
T Consensus       200 ea~~~~~~-~-----~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l  273 (418)
T PLN02242        200 NTFAPMVL-S-----PARLGADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGALMLLGPTMNPKVAFELSERL  273 (418)
T ss_pred             CCCCccCC-C-----HHHcCCcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcCC
Confidence            99974432 1     1122433333468999986 666 58999999988887654332  2233444455555554432


Q ss_pred             hchhhHHHHHHHHHHHHHHHHHHHHHh--CCCc----------eee---eccceeEEEEEeeCCCCCCccHHHHHHHHHH
Q 011777          368 IDKERRQAHCADVGSHLLGRLRTLQER--HDII----------GDV---RGRGLMVGMELVTDRKEKTPAKAETAVLFEK  432 (477)
Q Consensus       368 l~~~~~~~~~~~~~~~l~~~L~~l~~~--~~~~----------~~v---~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~  432 (477)
                      -.-+...++..++.+++.+.|++...+  ||..          ...   .|.|.|+.|++..        ...+.++++.
T Consensus       274 ~tl~~r~~~~~~~a~~la~~L~~~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~--------~~~~~~f~~~  345 (418)
T PLN02242        274 PHLSLRMKEHCRRAMEYAKRMKELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDT--------EERANRLMRY  345 (418)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHhCCCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECC--------HHHHHHHHHH
Confidence            112334567777888888888765211  1211          011   3678888998831        2234556666


Q ss_pred             HH
Q 011777          433 LR  434 (477)
Q Consensus       433 l~  434 (477)
                      +.
T Consensus       346 l~  347 (418)
T PLN02242        346 LQ  347 (418)
T ss_pred             hh
Confidence            54

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.77  E-value=1.5e-16  Score=159.18  Aligned_cols=302  Identities=20%  Similarity=0.162  Sum_probs=183.6

Q ss_pred             HHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccc
Q 011777          119 NAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGT  198 (477)
Q Consensus       119 ~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~  198 (477)
                      +++.+.+....+    +..+...++++.|+++++.  +.+++++||++|++.+++..+. .+++.|++...+||+.....
T Consensus         3 ~~~~~~~~~~~~----~~~~~~~~~~~~la~~~~~--~~~~~~~sgt~al~~~l~~l~~-~~gd~vl~~~~~~~~~~~~~   75 (352)
T cd00616           3 EAVEEVLDSGWL----TLGPKVREFEKAFAEYLGV--KYAVAVSSGTAALHLALRALGI-GPGDEVIVPSFTFVATANAI   75 (352)
T ss_pred             HHHHHHHHcCCc----cCCHHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHcCC-CCCCEEEeCCcchHHHHHHH
Confidence            445555544322    3456788999999999864  5788999999999999986632 35678999999998764433


Q ss_pred             cccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHH
Q 011777          199 IGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVY  278 (477)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~  278 (477)
                      ...             |...+..+... ..+..|    ++++++.++    +++++|++.++   .|...+    +++|.
T Consensus        76 ~~~-------------g~~~~~~~~~~-~~~~~d----~~~l~~~i~----~~~~~v~~~~~---~G~~~~----~~~i~  126 (352)
T cd00616          76 LLL-------------GATPVFVDIDP-DTYNID----PELIEAAIT----PRTKAIIPVHL---YGNPAD----MDAIM  126 (352)
T ss_pred             HHc-------------CCeEEEEecCC-CcCCcC----HHHHHHhcC----cCCeEEEEECC---CCCcCC----HHHHH
Confidence            222             22222111111 011111    467777664    45677777643   454544    89999


Q ss_pred             HHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec----ccccCccceEEEEeC-HHHHHhhccccc------
Q 011777          279 DIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA----KGIGNGLPLGAVVTT-PEIANVMAQKIQ------  347 (477)
Q Consensus       279 ~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pig~v~~~-~~~~~~~~~~~~------  347 (477)
                      ++|+++|+++|+|++|+ +|...    .-...+...|+.++|    |.+++| +.|+++.+ +++.+.+.....      
T Consensus       127 ~l~~~~~i~li~D~a~~-~g~~~----~~~~~~~~~d~~~~S~~~~K~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~  200 (352)
T cd00616         127 AIAKRHGLPVIEDAAQA-LGATY----KGRKVGTFGDAGAFSFHPTKNLTTG-EGGAVVTNDEELAERARLLRNHGRDRD  200 (352)
T ss_pred             HHHHHcCCeEEEECCCC-CCCeE----CCEEcccCcceeEEcCCCCCCCccc-CceEEEECCHHHHHHHHHHHHcCCCCC
Confidence            99999999999999997 33211    111223334666665    999543 44777775 577665542111      


Q ss_pred             ---------ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeee---ccceeEEEEEeeC
Q 011777          348 ---------FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR---GRGLMVGMELVTD  415 (477)
Q Consensus       348 ---------~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~---g~g~~~~i~~~~~  415 (477)
                               +.++..+++.++.++..++.+  ++..++.+++.+++++.|.++. ....+....   ....++.+.+...
T Consensus       201 ~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~  277 (352)
T cd00616         201 RFKYEHEILGYNYRLSEIQAAIGLAQLEKL--DEIIARRREIAERYKELLADLP-GIRLPDVPPGVKHSYHLYVIRLDPE  277 (352)
T ss_pred             CCccccceeeeccCcCHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHhcCCC-CccCCCCCCCCceeeEEEEEEECCc
Confidence                     112344566666666655543  4566777778888888876641 111121111   1123334443210


Q ss_pred             CCCCCccHHHHHHHHHHHHHcCceeeccCC------------------C-------CCEEEEeCCCCCcHHHHHHHHHHH
Q 011777          416 RKEKTPAKAETAVLFEKLRELGVLVGKGGL------------------H-------GNVFRIKPPMCFTKDDADFLVDAL  470 (477)
Q Consensus       416 ~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~------------------~-------~~~iRi~p~~~~t~e~i~~~l~~l  470 (477)
                            ......++.+.|.++||.+.....                  .       .+.+|+.+....|++||+.++++|
T Consensus       278 ------~~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l  351 (352)
T cd00616         278 ------AGESRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEAL  351 (352)
T ss_pred             ------CCCCHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHh
Confidence                  011246788899999997652210                  0       157999999999999999999887


Q ss_pred             H
Q 011777          471 D  471 (477)
Q Consensus       471 ~  471 (477)
                      +
T Consensus       352 ~  352 (352)
T cd00616         352 R  352 (352)
T ss_pred             C
Confidence            4

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.76  E-value=3.6e-16  Score=158.38  Aligned_cols=355  Identities=16%  Similarity=0.113  Sum_probs=191.0

Q ss_pred             eCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHH
Q 011777           92 DENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELA  171 (477)
Q Consensus        92 d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~A  171 (477)
                      -..|..||||.+-.++       ..+.+++.+++......  ....+...+|++.++++++.  +.+++++||++|+..+
T Consensus        16 l~~~~v~iDlltds~t-------~ams~~~~~a~~~gd~~--Y~~~~g~~~Leeaia~~~g~--~~vv~t~~Gt~Al~la   84 (431)
T cd00617          16 LRSEDVYIDLLTDSGT-------GAMSDYQWAAMMLGDEA--YAGSKSFYDLEDAVQDLFGF--KHIIPTHQGRGAENIL   84 (431)
T ss_pred             CCCCCcCCCCCCCCCc-------HHHHHHHHHHHHhCCCc--cCCCCCHHHHHHHHHHHHCC--CeEEEcCCHHHHHHHH
Confidence            3457789999876654       34555555555433211  12345578999999999854  6899999999999999


Q ss_pred             HHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCC
Q 011777          172 MLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGK  251 (477)
Q Consensus       172 l~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~  251 (477)
                      ++...  .+++ +|...+.|..+.......++.+.+. ......  ......++...+  |    +++|+++|+.....+
T Consensus        85 ~~al~--~pGD-~V~~~~~f~~~~~~i~~~Ga~pv~v-~i~~~~--~~~~~~pf~gni--D----~e~Le~~I~~~~~~~  152 (431)
T cd00617          85 FSILL--KPGR-TVPSNMHFDTTRGHIEANGAVPVDL-VIDEAH--DAQELIPFKGNI--D----VAKLEKLIDEVGAEN  152 (431)
T ss_pred             HHHhC--CCCC-EEccCCcccchHHHHHhCCCEeEEE-eccccc--ccccccCCCCCc--C----HHHHHHHhCcccCCC
Confidence            87552  2344 4455555654433332222221110 000000  000000111112  2    588998887322345


Q ss_pred             eeEEEecccCCC-CCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCc----------cCCCCCCcccc-ccCCCcceeee
Q 011777          252 VAGFIAETIQGV-GGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGF----------GRTGSHYWGFE-TQGVIPDIVTM  319 (477)
Q Consensus       252 ~a~vi~epi~~~-~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gf----------gr~G~~~~~~~-~~gv~pDivt~  319 (477)
                      +++|+++..+|. +| .+.+.+.+++|.++|++||++||.|+++.-.          |+.+.+....- ...-..|..+|
T Consensus       153 ~~~I~v~~p~N~~gG-~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~m  231 (431)
T cd00617         153 IPYIVLTITNNTAGG-QPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTM  231 (431)
T ss_pred             ccEEEEECCcCCCCC-ccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEE
Confidence            777777654444 46 6678899999999999999999999996521          11110100000 00011333443


Q ss_pred             c--ccccCccce-EEEEeCH-HHHHhhccc----ccccCCCCc-HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 011777          320 A--KGIGNGLPL-GAVVTTP-EIANVMAQK----IQFNTFGGN-PVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRT  390 (477)
Q Consensus       320 s--K~lg~G~pi-g~v~~~~-~~~~~~~~~----~~~~t~~~~-~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~  390 (477)
                      |  |..+  .++ |++++++ ++++.++..    ....++++. ..-++|...+|+...+.+.+++..+..+++.+.|.+
T Consensus       232 S~~K~~~--~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~~~~l~~~~~~r~~l~~~L~~  309 (431)
T cd00617         232 SAKKDGL--VNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYLRHRVEQVRYLGDRLDE  309 (431)
T ss_pred             EeecCCC--CccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            3  3322  223 5888886 588777632    112234443 333333333665432233333334444666666665


Q ss_pred             HHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHH-HHHHHcCceeeccCC---------------CCCEEEEeC
Q 011777          391 LQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLF-EKLRELGVLVGKGGL---------------HGNVFRIKP  454 (477)
Q Consensus       391 l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~-~~l~~~Gv~v~~~~~---------------~~~~iRi~p  454 (477)
                      .    ++....+..|.+++++...-.....+.......++ +.+.+.||.+..-|.               .-+.+|+..
T Consensus       310 ~----G~~v~~P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~  385 (431)
T cd00617         310 A----GVPIVEPAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAI  385 (431)
T ss_pred             C----CCCccCCCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEec
Confidence            4    33222334456667765421100000111234555 455566787543111               125789987


Q ss_pred             CC-CCcHHHHHHHHHHHHHHHhh
Q 011777          455 PM-CFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       455 ~~-~~t~e~i~~~l~~l~~~l~~  476 (477)
                      |- ..|.+++|.+.+.|.+++++
T Consensus       386 prr~~t~~~~~~~~~~~~~~~~~  408 (431)
T cd00617         386 PRRVYTQDHMDYVAAAVIALYER  408 (431)
T ss_pred             cccccCHHHHHHHHHHHHHHHhh
Confidence            76 67999999999999988753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.76  E-value=6.7e-16  Score=151.16  Aligned_cols=322  Identities=19%  Similarity=0.207  Sum_probs=206.2

Q ss_pred             CHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCC-CCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCcc
Q 011777          114 HPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGN-LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYH  192 (477)
Q Consensus       114 ~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~-~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yh  192 (477)
                      +|+|.+|+.+..-.  |.+.. ......++.++|...+... .+.++++.|||-|+|+++.....  +.++|+++.++..
T Consensus        17 ~~~V~~am~~~~~~--h~s~~-F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~--pgdkVLv~~nG~F   91 (383)
T COG0075          17 PPRVLLAMARPMVG--HRSPD-FVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVE--PGDKVLVVVNGKF   91 (383)
T ss_pred             CHHHHHHhcCCCCC--CCCHH-HHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccC--CCCeEEEEeCChH
Confidence            68888888664422  33222 2355677888888888654 36788889999999999985533  6789999999998


Q ss_pred             CCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCch
Q 011777          193 GGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPG  272 (477)
Q Consensus       193 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~  272 (477)
                      |....-+.-..           |.....+...+..+++      ++++++++++.  +++.+|.+-.+-.++|+..|   
T Consensus        92 G~R~~~ia~~~-----------g~~v~~~~~~wg~~v~------p~~v~~~L~~~--~~~~~V~~vH~ETSTGvlnp---  149 (383)
T COG0075          92 GERFAEIAERY-----------GAEVVVLEVEWGEAVD------PEEVEEALDKD--PDIKAVAVVHNETSTGVLNP---  149 (383)
T ss_pred             HHHHHHHHHHh-----------CCceEEEeCCCCCCCC------HHHHHHHHhcC--CCccEEEEEeccCcccccCc---
Confidence            87655443321           1111111112333343      58899998832  34444444444456677777   


Q ss_pred             hHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhccccc-----
Q 011777          273 YLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQ-----  347 (477)
Q Consensus       273 ~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~-----  347 (477)
                       +++|.++|++||+++|+|.|-+ ||  | ..+..+.||+..-+..--|++++...+|++..+++..+.+....+     
T Consensus       150 -l~~I~~~~k~~g~l~iVDaVsS-~G--g-~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~yl  224 (383)
T COG0075         150 -LKEIAKAAKEHGALLIVDAVSS-LG--G-EPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYL  224 (383)
T ss_pred             -HHHHHHHHHHcCCEEEEEeccc-CC--C-cccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceee
Confidence             9999999999999999999876 43  3 455566777643333345999987778999999998877754311     


Q ss_pred             ------------ccC-CCCcHHHHHHHHHHHHhhchhh---HHHHHHHHHHHHHHHHHHHHHhCCCceeeeccc-eeEEE
Q 011777          348 ------------FNT-FGGNPVCSAGGLAVLRVIDKER---RQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG-LMVGM  410 (477)
Q Consensus       348 ------------~~t-~~~~~~~~aaa~a~l~~l~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g-~~~~i  410 (477)
                                  ..+ |..+.....+..++|+.+.++.   ..++.+++.+.+++++.++.  .....+..-.. .+..+
T Consensus       225 DL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alG--l~~~~~~~~~s~tvta~  302 (383)
T COG0075         225 DLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALG--LELFADPERRSPTVTAI  302 (383)
T ss_pred             cHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC--CccccCcccCCCceEEE
Confidence                        122 3333444455568899887754   45666666777777777652  22222111111 12222


Q ss_pred             EEeeCCCCCCccHHHHHHHHHHHHH-cCceeeccC--CCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          411 ELVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGG--LHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~--~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      ..        |.+....++...+++ .|+.+..+-  ..+..+||...-..+.+++..++.+|+.++.++
T Consensus       303 ~~--------P~g~~~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~  364 (383)
T COG0075         303 KV--------PEGVDDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALREL  364 (383)
T ss_pred             EC--------CCCCCcHHHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHHHHHHHHHHHHHHHc
Confidence            22        222222233334554 488887652  345799999888899999999999999998753

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.75  E-value=1.4e-16  Score=159.46  Aligned_cols=290  Identities=15%  Similarity=0.144  Sum_probs=170.3

Q ss_pred             CCCCHHHHHHHHHHHhhccccccc--c-----CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc---cC
Q 011777          111 GHCHPDVLNAIFEQSKLLQHATTI--Y-----LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS---TG  180 (477)
Q Consensus       111 Gh~~p~v~~Av~~~l~~~~~~~~~--~-----~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~---~~  180 (477)
                      |..++.|.+++.+.+.........  +     ..+...+++++|+++++.+.+.|+|++|+++|++.+++.....   .+
T Consensus         8 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g   87 (353)
T TIGR03235         8 TPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQKG   87 (353)
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence            346899999999887542111111  0     1134678999999999877778999999999999998865432   22


Q ss_pred             CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEeccc
Q 011777          181 NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETI  260 (477)
Q Consensus       181 ~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi  260 (477)
                      ++.|++.. ..|............         .|+....++.......+      .+++++.++    +++++|+++.+
T Consensus        88 ~~~vi~~~-~~~~s~~~~~~~~~~---------~G~~v~~v~~~~~~~~d------~~~l~~~l~----~~~~lv~~~~~  147 (353)
T TIGR03235        88 KKHIITSA-IEHPAVLEPIRALER---------NGFTVTYLPVDESGRID------VDELADAIR----PDTLLVSIMHV  147 (353)
T ss_pred             CCeeeEcc-cccHHHHHHHHHHHh---------cCCEEEEEccCCCCcCC------HHHHHHhCC----CCCEEEEEEcc
Confidence            24455543 334332211111000         12222222221111111      477777775    35788888888


Q ss_pred             CCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCHHH
Q 011777          261 QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPEI  338 (477)
Q Consensus       261 ~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~~  338 (477)
                      ++++|.+.+    +++|.++|+++|+++|+|++|. +|..   .  ++.....+|++++|  |.++ ...+|+++++++.
T Consensus       148 ~n~tG~~~~----~~~I~~l~~~~~~~~ivD~a~~-~g~~---~--~~~~~~~~D~~~~s~~K~~g-p~g~g~l~~~~~~  216 (353)
T TIGR03235       148 NNETGSIQP----IREIAEVLEAHEAFFHVDAAQV-VGKI---T--VDLSADRIDLISCSGHKIYG-PKGIGALVIRKRG  216 (353)
T ss_pred             cCCceeccC----HHHHHHHHHHcCCEEEEEchhh-cCCc---c--ccccccCCCEEEeehhhcCC-CCceEEEEEccCc
Confidence            889998877    8999999999999999999987 4322   2  22223357888776  9753 2348999998875


Q ss_pred             HHh--hccccc-------ccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceeee-ccce
Q 011777          339 ANV--MAQKIQ-------FNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDVR-GRGL  406 (477)
Q Consensus       339 ~~~--~~~~~~-------~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~-g~g~  406 (477)
                      .+.  +.....       ......|....++..++++.+.+  ++..++.+++.++++++|++.  ......... ....
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~--g~~~~~~~~~~~~~  294 (353)
T TIGR03235       217 KPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQTL--GVKLNGDPAETIPH  294 (353)
T ss_pred             ccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC--CeEEeCCcccccCC
Confidence            322  121101       11223455666666777776643  345667777777777766542  111111111 1122


Q ss_pred             eEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeecc
Q 011777          407 MVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG  443 (477)
Q Consensus       407 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~  443 (477)
                      +..+.+.         .....++.+.|.+ ||.+.+|
T Consensus       295 i~~~~~~---------~~~~~~v~~~L~~-~i~v~~g  321 (353)
T TIGR03235       295 ILNFSID---------GVNSEALIVNLRA-DAAVSTG  321 (353)
T ss_pred             EEEEEeC---------CcCHHHHHHHHhC-CeEEEch
Confidence            3333321         1124567777754 8888876

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.75  E-value=8.6e-16  Score=158.68  Aligned_cols=285  Identities=18%  Similarity=0.160  Sum_probs=167.9

Q ss_pred             HHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeee
Q 011777          140 IADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHV  219 (477)
Q Consensus       140 ~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (477)
                      ..++.+.++++++.+.+++.+++||+++++.++... ...++++|++.++.|+.+ .........        ..|...+
T Consensus       114 ~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~-~~~~g~~Vlv~~~~~~~~-~~~~~~~~~--------~~G~~~~  183 (447)
T PRK00451        114 IFEYQTMICELTGMDVANASMYDGATALAEAALMAV-RITKRKKVLVSGAVHPEY-REVLKTYLK--------GQGIEVV  183 (447)
T ss_pred             HHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHH-HhcCCCEEEEeCccCHHH-HHHHHHHHH--------hCCcEEE
Confidence            445557779988877778999999999888777543 334567788876655433 222211000        0122222


Q ss_pred             cCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEE--cCcccCc
Q 011777          220 VNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA--DEVQTGF  297 (477)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~--DEv~~gf  297 (477)
                      .+|.... ..+      .+++++.++    +++++|++... +.+|.+.+    +++|.++|+++|+++|+  |.+..|+
T Consensus       184 ~v~~~~~-~~d------~~~l~~~i~----~~t~~v~l~~p-n~tG~v~~----l~~I~~~a~~~~~~~iv~~d~~~~g~  247 (447)
T PRK00451        184 EVPYEDG-VTD------LEALEAAVD----DDTAAVVVQYP-NFFGVIED----LEEIAEIAHAGGALFIVGVDPVSLGL  247 (447)
T ss_pred             EecCCCC-CCC------HHHHHHhcC----CCeEEEEEECC-CCCCeeCC----HHHHHHHHHHCCCEEEEEcChHHhcc
Confidence            2221111 111      577877775    45777777665 56787766    99999999999999998  6553221


Q ss_pred             cCCCCCCccccccCCCcceee-----eccccc-CccceEEEEeCHHHHHhhccc--------------------------
Q 011777          298 GRTGSHYWGFETQGVIPDIVT-----MAKGIG-NGLPLGAVVTTPEIANVMAQK--------------------------  345 (477)
Q Consensus       298 gr~G~~~~~~~~~gv~pDivt-----~sK~lg-~G~pig~v~~~~~~~~~~~~~--------------------------  345 (477)
                        ..    ...  ....|+++     |||.+. +|+++|++++++++++.+...                          
T Consensus       248 --~~----~~~--~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  319 (447)
T PRK00451        248 --LK----PPG--EYGADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIR  319 (447)
T ss_pred             --CC----Ccc--cCCCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccc
Confidence              11    011  23456664     456665 578999999999988874211                          


Q ss_pred             --ccccCCCCcHHHH-HHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEE---EEEeeCC
Q 011777          346 --IQFNTFGGNPVCS-AGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVG---MELVTDR  416 (477)
Q Consensus       346 --~~~~t~~~~~~~~-aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~---i~~~~~~  416 (477)
                        ....+++.+...+ .++..+++.+.+   ++..+++.++.++++++|+++    +.+...  .+.++.   +.+  + 
T Consensus       320 ~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----~g~~~~--~~~~~~~~~v~~--~-  390 (447)
T PRK00451        320 REKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEI----GGVELF--DGPFFNEFVVRL--P-  390 (447)
T ss_pred             cccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhc----CCEEec--CCCeEEEEEEec--C-
Confidence              1111222222222 333334554433   344566666666776666553    322212  222222   222  1 


Q ss_pred             CCCCccHHHHHHHHHHHHHcCceee-ccCC----CCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          417 KEKTPAKAETAVLFEKLRELGVLVG-KGGL----HGNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       417 ~~~~~~~~~~~~~~~~l~~~Gv~v~-~~~~----~~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                           .  ...++.+.|+++|+... ++..    ..+++|++++..+|++||+++++.|++++
T Consensus       391 -----~--~~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~  446 (447)
T PRK00451        391 -----K--PAEEVNEALLEKGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL  446 (447)
T ss_pred             -----C--CHHHHHHHHHhcCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence                 0  13578899999988742 1111    13689999988899999999999998865

>PRK07049 methionine gamma-lyase; Validated

Probab=99.74  E-value=7.6e-16  Score=157.00  Aligned_cols=223  Identities=14%  Similarity=0.060  Sum_probs=144.1

Q ss_pred             ccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCC
Q 011777          132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI  211 (477)
Q Consensus       132 ~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  211 (477)
                      .++|.++....|.++|+++.+.  +.+++++||++|+..++.....  +++.|++.++.|.+..........        
T Consensus        77 y~R~~~Pt~~~Le~~lA~leg~--~~~iv~~sG~~Ai~~~l~al~~--~Gd~Vv~~~p~Y~~~~~~~~~~l~--------  144 (427)
T PRK07049         77 YSRFNHPNSEIVEDRLAVYEGA--ESAALFSSGMSAIATTLLAFVR--PGDVILHSQPLYGGTETLLAKTFR--------  144 (427)
T ss_pred             ccCCCCcCHHHHHHHHHHHhCC--CcEEEEccHHHHHHHHHHHHhC--CCCEEEEcCCCcccHHHHHHHHHH--------
Confidence            4567888899999999999854  5688999999999988875543  567899999999886443211100        


Q ss_pred             CCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc-cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHH------h
Q 011777          212 PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF-GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK------A  284 (477)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~-~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~------~  284 (477)
                       ..|+..+.+++.      .|    .+++++.+.. ...+++++|++|..+|++|.+.+    +++|.+++++      +
T Consensus       145 -~~Gi~~v~~~~~------~d----~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d----~~~l~~la~~~~~~~~~  209 (427)
T PRK07049        145 -NFGVGAVGFADG------LS----EAAIGAAAEAAAAKGRVSLILIETPANPTNSLVD----VAAVRRVADAIEARQGH  209 (427)
T ss_pred             -hcCcEEEEEeCC------CC----HHHHHHHHHhhccCCCceEEEEECCCCCCCcccC----HHHHHHHHHHhhhcccC
Confidence             013332322221      11    2556655542 12246789999988888886654    4555555554      8


Q ss_pred             CcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccC--ccceEEEEeCHHHHHhhcccccccCCCCcHHHHHH
Q 011777          285 GGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN--GLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAG  360 (477)
Q Consensus       285 gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~--G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aa  360 (477)
                      ++++|+||++.++....  .  .+ ++  .|++  ++||.++|  |+++|++++++++++.+.........+.+++.+.+
T Consensus       210 ~~~vvvDety~~~~~~~--p--l~-~g--~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~~~g~~ls~~~a~l  282 (427)
T PRK07049        210 RPIIACDNTLLGPVFQK--P--LE-HG--ADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSAIGTQLDPHSCWM  282 (427)
T ss_pred             CCEEEEECCccccccCC--c--cc-cC--CCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            99999999976542211  1  11 23  3555  68999994  79999999999988887654333334467888777


Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 011777          361 GLAVLRVIDKERRQAHCADVGSHLLGRLRT  390 (477)
Q Consensus       361 a~a~l~~l~~~~~~~~~~~~~~~l~~~L~~  390 (477)
                      ++..|+.+  ....++..++.+.+.+.|++
T Consensus       283 ~~r~L~tl--~~R~~~~~~~a~~la~~L~~  310 (427)
T PRK07049        283 LGRSLETL--VLRMERANRNARAVAEFLRD  310 (427)
T ss_pred             HHcCCChH--HHHHHHHHHHHHHHHHHHHh
Confidence            77766543  22234445555566665554

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.74  E-value=4.3e-16  Score=151.92  Aligned_cols=337  Identities=20%  Similarity=0.183  Sum_probs=196.4

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-ccccc-cC---ChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-HATTI-YL---HHAIADFAEALASKMPGNLKVVYFVNSGTEANEL  170 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-~~~~~-~~---~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~  170 (477)
                      .-|||..+.      |-++|+|.+|+.+.+.... ..... |.   ....++.++.++++++.+.++|.||+++||+|.+
T Consensus        44 ~vyld~~at------~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nl  117 (428)
T KOG1549|consen   44 PVYLDNQAT------GPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNL  117 (428)
T ss_pred             cEEEecCcC------CCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHH
Confidence            468887653      4479999999999887642 11111 22   3336788889999999888889999999999999


Q ss_pred             HHHH-HHhcc-CCc-eEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc
Q 011777          171 AMLM-ARLST-GNL-GMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG  247 (477)
Q Consensus       171 Al~~-ar~~~-~~~-~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~  247 (477)
                      +++- ++.+. +.+ .||.+...|.-...++..+-...        ..+..+|+++        ++...++.+++.|+  
T Consensus       118 vl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g--------~~Vt~lpv~~--------~~~~d~~~~~~~i~--  179 (428)
T KOG1549|consen  118 VLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEG--------LEVTYLPVED--------SGLVDISKLREAIR--  179 (428)
T ss_pred             HHHHhhccccccccceEEEecccCcchhHHHHHHHhcC--------eEEEEeccCc--------cccccHHHHHHhcC--
Confidence            9985 44433 233 45555444433333333332110        1333443332        22222577788776  


Q ss_pred             CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--ccccC
Q 011777          248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGN  325 (477)
Q Consensus       248 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~  325 (477)
                        .++.+|+++.++++.|++.|    +++|.++|+++|+.+++|.+|. .|.     ..++..++.+|.++++  |.+|.
T Consensus       180 --~~T~lv~I~~Vnn~~gv~~P----v~EI~~icr~~~v~v~~DaAQa-vG~-----i~vDV~eln~D~~s~s~HK~ygp  247 (428)
T KOG1549|consen  180 --SKTRLVSIMHVNNEIGVLQP----VKEIVKICREEGVQVHVDAAQA-VGK-----IPVDVQELNADFLSISAHKIYGP  247 (428)
T ss_pred             --CCceEEEEEecccCcccccc----HHHHHHHhCcCCcEEEeehhhh-cCC-----ccccHHHcCchheeeecccccCC
Confidence              58999999999999999999    9999999999999999999997 432     2357777888988876  88875


Q ss_pred             -ccceEEEEeCHHHHHhhc--cc---------ccccCCCCcHHHHHHHHHHHHhhchh--hHHHHHHHHHHHHHHHHHHH
Q 011777          326 -GLPLGAVVTTPEIANVMA--QK---------IQFNTFGGNPVCSAGGLAVLRVIDKE--RRQAHCADVGSHLLGRLRTL  391 (477)
Q Consensus       326 -G~pig~v~~~~~~~~~~~--~~---------~~~~t~~~~~~~~aaa~a~l~~l~~~--~~~~~~~~~~~~l~~~L~~l  391 (477)
                       |  +|++.+++.. ..+.  ..         ...+|-  +...+...-++.+....+  ....++.++...+..++..-
T Consensus       248 ~~--iGaLYvr~~~-~~~~~~p~~~GGgq~r~~rsGT~--~~~~~~~~gsA~e~~~~~~~~~~~~~~~~~~~ll~~i~~~  322 (428)
T KOG1549|consen  248 PG--IGALYVRRKR-PRLRVEPPLSGGGQERGLRSGTV--ATPLAVGLGSAAEFVNKEMAYDEAIIKRLSEKLLMGIGQS  322 (428)
T ss_pred             Cc--ceEEEEccCC-CcccccCcccCCccccccccCCc--CchhhhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhh
Confidence             4  9999998611 1111  11         111221  233333334445544332  22333444444444444321


Q ss_pred             HH---hCCCceeeeccceeEEEEEeeCCC-CCC---------ccHHHH-HHHHHHHHHcCceeeccCCCCCEEEEeCCCC
Q 011777          392 QE---RHDIIGDVRGRGLMVGMELVTDRK-EKT---------PAKAET-AVLFEKLRELGVLVGKGGLHGNVFRIKPPMC  457 (477)
Q Consensus       392 ~~---~~~~~~~v~g~g~~~~i~~~~~~~-~~~---------~~~~~~-~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~  457 (477)
                      ..   .++......+....+.+..+.... .+.         +..... .+....++..|+-..   ...+.+||+....
T Consensus       323 ~~~~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~s~~a~~~~~~epsy~l~~~G~~~~---~~~~~iRis~G~y  399 (428)
T KOG1549|consen  323 LPEVTLNGSGKSRYPGLVSLSFPYVEGESLLMDLKDVALSSGSACTSASLEPSYVLRAIGVDED---LAHSSIRISIGRY  399 (428)
T ss_pred             CchhhccCCcccccccceeeecccccCcchhhhhhhhhhcccchhhcCCCCcchhhhhcCcchh---hhcceeEEeeeee
Confidence            10   011111111112222222111100 000         000000 122234455555222   2357899999999


Q ss_pred             CcHHHHHHHHHHHHHHHhh
Q 011777          458 FTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       458 ~t~e~i~~~l~~l~~~l~~  476 (477)
                      .+++|++++++.+.+..+.
T Consensus       400 ~t~~di~~~~~~i~~~v~~  418 (428)
T KOG1549|consen  400 TTEEDIDYLVDAIKKLVSL  418 (428)
T ss_pred             CcHHHHHHHHHHHHHHHHh
Confidence            9999999999999887653

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.74  E-value=1.8e-15  Score=156.00  Aligned_cols=329  Identities=16%  Similarity=0.081  Sum_probs=187.7

Q ss_pred             CCHHHHHHHHHHHhhc---cccccccC--ChH---HHH-HHHHHHhhCCCCCCEEEEe---CChHHHHHHHHHHHHhccC
Q 011777          113 CHPDVLNAIFEQSKLL---QHATTIYL--HHA---IAD-FAEALASKMPGNLKVVYFV---NSGTEANELAMLMARLSTG  180 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~---~~~~~~~~--~~~---~~~-l~~~La~~~~~~~~~v~~~---~sGseA~~~Al~~ar~~~~  180 (477)
                      .+|.+.+++...+.+.   .+....+.  ...   .++ .++++++.++.+.+.+.|+   +||++||.++++...  .+
T Consensus        46 ~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al~--~~  123 (452)
T PTZ00094         46 TSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALL--QP  123 (452)
T ss_pred             CCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHhc--CC
Confidence            5799999988877542   12112211  122   232 4557888887766666677   799999999887652  24


Q ss_pred             CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEeccc
Q 011777          181 NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETI  260 (477)
Q Consensus       181 ~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi  260 (477)
                      ++.|++. ..-||...........  .........+...+++....+..+      .++++++++..   +.+.|++.  
T Consensus       124 gd~Ii~~-~~ehg~~l~~~~~l~~--~~~~~~~~~~~~~~~~~~~~g~id------~~~L~~~l~~~---~~~lvi~~--  189 (452)
T PTZ00094        124 HDRIMGL-DLPSGGHLTHGFYTAK--KKVSATSIYFESLPYQVNEKGLID------YDKLEELAKAF---RPKLIIAG--  189 (452)
T ss_pred             CCEEEec-ccccCCcccccccccc--cccccceeeeeeeecccCCCCCcC------HHHHHHHHHHh---CCCEEEEe--
Confidence            5666664 4445543332110000  000000001222221111111111      57888888622   23345552  


Q ss_pred             CCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCHHH
Q 011777          261 QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPEI  338 (477)
Q Consensus       261 ~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~~  338 (477)
                      .+..|...+    +++|.++|+++|+++++|++|+ +|..+...+.....  ..|++++|  |+++|.. -|++++++++
T Consensus       190 ~s~~g~~~d----i~~I~~i~~~~ga~l~vDaaq~-~G~i~~~~~~~~~~--~~D~l~~S~hK~l~GP~-Gg~l~~~~~~  261 (452)
T PTZ00094        190 ASAYPRDID----YKRFREICDSVGAYLMADIAHT-SGLVAAGVLPSPFP--YADVVTTTTHKSLRGPR-SGLIFYRKKV  261 (452)
T ss_pred             CCCCCCccC----HHHHHHHHHHcCCEEEEeccch-hccccCCCCCCCCC--CCcEEEcCCccCCCCCC-ceEEEEeccc
Confidence            234666666    9999999999999999999997 65543122211111  46887655  9997633 2777777665


Q ss_pred             HHhhcccc---cccCC--CCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEE
Q 011777          339 ANVMAQKI---QFNTF--GGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM  410 (477)
Q Consensus       339 ~~~~~~~~---~~~t~--~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i  410 (477)
                      .+.+....   ...+|  +.++...++..++++.+..   ++..+++.++.+++.+.|.+.  ...+..... ......+
T Consensus       262 ~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~--g~~v~~~~~-~~~~~~v  338 (452)
T PTZ00094        262 KPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR--GYDLVTGGT-DNHLVLV  338 (452)
T ss_pred             chHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC--CcEEecCCC-CCceEee
Confidence            43322111   11112  3466777777788888743   346778888888888887663  222211100 1122333


Q ss_pred             EEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-------CCCCEEEEeCCCCCc----HHHHHHHHHHHHHHHh
Q 011777          411 ELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-------LHGNVFRIKPPMCFT----KDDADFLVDALDYSMS  475 (477)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~iRi~p~~~~t----~e~i~~~l~~l~~~l~  475 (477)
                      .+...       ......+...|.++||.+...+       ...+.+|++++..++    ++||+++++.|.+++.
T Consensus       339 ~~~~~-------~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~  407 (452)
T PTZ00094        339 DLRPF-------GITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVK  407 (452)
T ss_pred             cCCcC-------CCCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            33211       1123467777777899995321       123689999977766    9999999999998875

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.74  E-value=4.7e-16  Score=157.06  Aligned_cols=289  Identities=18%  Similarity=0.176  Sum_probs=177.6

Q ss_pred             ccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCC
Q 011777          132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI  211 (477)
Q Consensus       132 ~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  211 (477)
                      ..+|.++...+|+++|+++.+.  +..++++||+.|+..++....  .+++.||+..+.|.+. ..........      
T Consensus        55 y~r~~~pt~~~Le~~lA~l~G~--~~al~~~sG~~Ai~~~l~al~--~~Gd~Vv~~~~~y~~~-~~~~~~~~~~------  123 (386)
T PRK06767         55 YSRLGNPTVKLFEERMAVLEGG--EEALAFGSGMAAISATLIGFL--KAGDHIICSNGLYGCT-YGFLEVLEEK------  123 (386)
T ss_pred             ccCCCCcchHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEEcCCcHHHH-HHHHHHHHhh------
Confidence            4456778889999999999864  457788999999988876442  3567788777665433 2222111100      


Q ss_pred             CCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777          212 PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD  291 (477)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  291 (477)
                        .++.....+.      . |    .+++++++.    +++++|++|..+|++|.+.+    +++|.++|+++|+++|+|
T Consensus       124 --~gi~~~~~~~------~-d----~~~l~~~i~----~~tklV~lesp~NptG~v~d----l~~I~~la~~~g~~vivD  182 (386)
T PRK06767        124 --FMITHSFCDM------E-T----EADIENKIR----PNTKLIFVETPINPTMKLID----LKQVIRVAKRNGLLVIVD  182 (386)
T ss_pred             --cCeEEEEeCC------C-C----HHHHHHhhC----cCceEEEEeCCCCCCceecC----HHHHHHHHHHcCCEEEEE
Confidence              1221111100      0 1    467777775    36788888888888887776    899999999999999999


Q ss_pred             CcccCccCCCCCCccccccCCCccee--eecccccC-ccce-EEEEeCHHHHHhhcccccccC-CCCcHHHHHHHHHHHH
Q 011777          292 EVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-GLPL-GAVVTTPEIANVMAQKIQFNT-FGGNPVCSAGGLAVLR  366 (477)
Q Consensus       292 Ev~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pi-g~v~~~~~~~~~~~~~~~~~t-~~~~~~~~aaa~a~l~  366 (477)
                      |+|+. +..+ ..  . ..|  .|++  +++|.+++ |.++ |+++++++.++.+........ -..+|+.+++++..|+
T Consensus       183 ~a~a~-~~~~-~p--l-~~g--~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~  255 (386)
T PRK06767        183 NTFCS-PYLQ-RP--L-ELG--CDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLK  255 (386)
T ss_pred             CCCcc-cccC-Cc--h-hcC--CcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCC
Confidence            99852 2222 11  1 123  3655  56799987 7775 889999887765432211111 1125666665555554


Q ss_pred             hhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee------------eccceeEEEEEeeCCCCCCccHHHHHHHHHHHH
Q 011777          367 VIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV------------RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR  434 (477)
Q Consensus       367 ~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v------------~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~  434 (477)
                      .+  +...++.+++..++.+.|++    ++.+..+            ++.|.++.+++..       ......++.+.|.
T Consensus       256 tl--~~r~~~~~~~a~~la~~L~~----~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~-------~~~~~~~f~~~l~  322 (386)
T PRK06767        256 TL--AVRMDRHCDNAEKIVSFLKN----HDAVEGVWYPEGELASRQMKRGGGVISFSIKG-------GKEETQAFINDLH  322 (386)
T ss_pred             cH--HHHHHHHHHHHHHHHHHHHc----CCCccEEECCCcHHHHHhCCCCCceEEEEEcC-------CHHHHHHHHHhCC
Confidence            33  23445666666666666654    3433322            3557788888732       1233567788877


Q ss_pred             HcCceeeccC-------------------------CCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          435 ELGVLVGKGG-------------------------LHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       435 ~~Gv~v~~~~-------------------------~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ..++.+.-|+                         ...+.+||+..+    ||.+.+++-|++++.+
T Consensus       323 ~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl----E~~~dl~~dl~~al~~  385 (386)
T PRK06767        323 FITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGL----ESWEDIVSDLEQALKK  385 (386)
T ss_pred             ccEEecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHhh
Confidence            6665544331                         113578997665    4566667777776654

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.73  E-value=4.3e-16  Score=157.00  Aligned_cols=241  Identities=16%  Similarity=0.159  Sum_probs=149.7

Q ss_pred             ccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCC
Q 011777          132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI  211 (477)
Q Consensus       132 ~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  211 (477)
                      ..+|.++...+|+++|+++.+.  +.+++++||++|+.++++....  ++++||+..+. ||.+........        
T Consensus        48 y~r~~~p~~~~le~~la~l~g~--~~~~~~~sG~~Ai~~al~al~~--~Gd~Vl~~~~~-~~~t~~~~~~~~--------  114 (380)
T TIGR01325        48 YSRYANPTVAAFEERIAALEGA--ERAVATATGMSAIQAALMTLLQ--AGDHVVASRSL-FGSTVGFISEIL--------  114 (380)
T ss_pred             eecCCCchHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHhC--CCCEEEEecCC-cchHHHHHHHHH--------
Confidence            4567788899999999999854  5788999999999999975532  45677776554 444322211100        


Q ss_pred             CCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777          212 PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD  291 (477)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  291 (477)
                      ...|+....++.      + |    .++++++++    +++++|++|.++++.|.+.+    +++|.++|+++|+++|+|
T Consensus       115 ~~~g~~v~~v~~------~-d----~~~l~~~i~----~~tklV~le~p~np~g~~~d----l~~I~~la~~~gi~livD  175 (380)
T TIGR01325       115 PRFGIEVSFVDP------T-D----LNAWEAAVK----PNTKLVFVETPSNPLGELVD----IAALAELAHAIGALLVVD  175 (380)
T ss_pred             HHhCCEEEEECC------C-C----HHHHHHhcC----CCceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEE
Confidence            001222211111      0 1    366777664    36789999988888887776    999999999999999999


Q ss_pred             CcccCccCCCCCCccccccCCCcceee--ecccccC-ccce-EEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHh
Q 011777          292 EVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGN-GLPL-GAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRV  367 (477)
Q Consensus       292 Ev~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G~pi-g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~  367 (477)
                      |+|+.+. .. ..     ....+|+++  ++|.++| |.++ |++++++++++.+...........+|..+..++..++.
T Consensus       176 ~a~~~~~-~~-~p-----l~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~g~~~~p~~a~~~l~~l~t  248 (380)
T TIGR01325       176 NVFATPV-LQ-QP-----LKLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRHTGPAMSPFNAWVLLKGLET  248 (380)
T ss_pred             CCCcccc-cC-Cc-----hhhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHhhCCCCCHHHHHHHHhccCc
Confidence            9987321 11 11     123467774  7899997 6666 77888888877766432212222345655555555554


Q ss_pred             hchhhHHHHHHHHHHHHHHHHHHHH--H--hCCCce----------eeeccceeEEEEEe
Q 011777          368 IDKERRQAHCADVGSHLLGRLRTLQ--E--RHDIIG----------DVRGRGLMVGMELV  413 (477)
Q Consensus       368 l~~~~~~~~~~~~~~~l~~~L~~l~--~--~~~~~~----------~v~g~g~~~~i~~~  413 (477)
                      +..  ..++..++..++.+.|++..  .  .||...          ...|.|.|+.+++.
T Consensus       249 l~~--r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~  306 (380)
T TIGR01325       249 LSL--RMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA  306 (380)
T ss_pred             HHH--HHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC
Confidence            432  34555556666666655421  0  022111          12466888888884

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK06460 hypothetical protein; Provisional

Probab=99.71  E-value=2.2e-15  Score=151.53  Aligned_cols=295  Identities=12%  Similarity=0.108  Sum_probs=171.3

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +..++..++...+|+++|+++.+..  ..+.++||++|+..++....  .++++|++..+.|.+..........      
T Consensus        37 ~~y~r~~~p~~~~L~~~lA~l~g~~--~~v~~~sG~~ai~~~l~al~--~~Gd~Vl~~~~~~~~ty~~~~~~~~------  106 (376)
T PRK06460         37 YRYSREANPTVLELTKKIVELENAE--MGVAFSSGMGAISTTALALL--KPGNSVLVHRDMFGRSYRFFTDYLK------  106 (376)
T ss_pred             cceeCCCCccHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHh--CCCCEEEEecCCcCcHHHHHHHHHH------
Confidence            3345566788899999999998663  34455888999998887542  2557788876555332111100000      


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                         ..|+.....+      .+ +    .+.++++++    +++++|+++.++|++|.+.+    +++|.++|++||+++|
T Consensus       107 ---~~G~~v~~~~------~~-~----~~~l~~~~~----~~tklV~l~sp~NPtG~v~d----~~~I~~la~~~g~~vi  164 (376)
T PRK06460        107 ---NWGVNVDASN------PG-S----DNIIEKAKS----KRYDVVFVENITNPLLRVVD----ITELSKVCKENGSILI  164 (376)
T ss_pred             ---hhCcEEEEEC------CC-C----HHHHHHhcC----CCceEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEE
Confidence               0122222111      11 1    123444332    46788889988888887777    7899999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCccee--eecccccC--ccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHH
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN--GLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVL  365 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~--G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l  365 (477)
                      +||+|..+ ... .  .. ..+  .|++  ++||.++|  +.++|++++++++++.+.......+.+.++..+..++..+
T Consensus       165 vDea~~~~-~~~-~--~l-~~~--~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~~g~~~~~~~a~~~l~~~  237 (376)
T PRK06460        165 VDATFSTP-INQ-K--PL-ELG--ADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLGTSLDPHAAYLTLRGI  237 (376)
T ss_pred             EECCcCcc-ccC-C--hh-hcC--CCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHHHhcCCCCCHHHHHHHHhch
Confidence            99998632 111 1  11 123  3555  68899975  3679999999999888765433333344555444444444


Q ss_pred             HhhchhhHHHHHHHHHHHHHHHHHHHHH----hCCCce----------eeeccceeEEEEEeeCCCCCCccHHHHHHHHH
Q 011777          366 RVIDKERRQAHCADVGSHLLGRLRTLQE----RHDIIG----------DVRGRGLMVGMELVTDRKEKTPAKAETAVLFE  431 (477)
Q Consensus       366 ~~l~~~~~~~~~~~~~~~l~~~L~~l~~----~~~~~~----------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~  431 (477)
                      +.+  +...+++.++.+++.+.|++...    .||...          ...|.|.|+.+++..+       ......+.+
T Consensus       238 ~~l--~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~-------~~~~~~~~~  308 (376)
T PRK06460        238 KTL--KIRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGG-------QESALKVMK  308 (376)
T ss_pred             hhH--HHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCc-------HHHHHHHHH
Confidence            433  23456667777777777664310    011111          1246788888888421       122344554


Q ss_pred             HHHH--cCc--------eeecc---------------CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          432 KLRE--LGV--------LVGKG---------------GLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       432 ~l~~--~Gv--------~v~~~---------------~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .|.=  .+.        +..|.               |...+.|||+..+    ||.+.+++-|++++.+
T Consensus       309 ~l~~~~~~~s~Gg~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~~  374 (376)
T PRK06460        309 SLKLIIPAQTLGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVGI----EDVNDLIEDLDRALST  374 (376)
T ss_pred             hCCcceeccCCCCCceEEeCccccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHHh
Confidence            4421  111        11111               1234689997765    4566667777776654

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.71  E-value=3.4e-15  Score=149.65  Aligned_cols=280  Identities=18%  Similarity=0.091  Sum_probs=170.4

Q ss_pred             ccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCC
Q 011777          132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI  211 (477)
Q Consensus       132 ~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  211 (477)
                      ..+|.++...+|+++|+++.  + +.+++++||++|+..++...  ..++++||+..++|++..........        
T Consensus        45 y~ry~~p~~~~Le~~lA~l~--~-~~~v~~~sG~~Ai~~~l~al--l~~Gd~Vl~~~~~y~~~~~~~~~~l~--------  111 (366)
T PRK07582         45 YGRASNPTWRALEAALGELE--G-AEALVFPSGMAAITAVLRAL--LRPGDTVVVPADGYYQVRALAREYLA--------  111 (366)
T ss_pred             eECCCCccHHHHHHHHHHHc--C-CCEEEECCHHHHHHHHHHHh--cCCCCEEEEeCCCcHhHHHHHHHHHh--------
Confidence            45677888999999999998  3 45677889999999888654  34568899999999876443211100        


Q ss_pred             CCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777          212 PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD  291 (477)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  291 (477)
                       ..|+....++.      ++       +.+. +.    +++++|++|..+|++|.+.+    +++|.++|+++|+++|+|
T Consensus       112 -~~G~~v~~v~~------~~-------~~~~-~~----~~t~lV~le~p~NPtg~v~d----i~~I~~~a~~~g~~lvVD  168 (366)
T PRK07582        112 -PLGVTVREAPT------AG-------MAEA-AL----AGADLVLAETPSNPGLDVCD----LAALAAAAHAAGALLVVD  168 (366)
T ss_pred             -cCeEEEEEECC------CC-------hHHH-hc----cCceEEEEECCCCCCCCccC----HHHHHHHHHHcCCEEEEE
Confidence             01333322221      10       1111 11    35678888887777776655    999999999999999999


Q ss_pred             CcccCccCCCCCCccccccCCCccee--eecccccC--ccceEEEEeC-HHHHHhhcccccccCCCCcHHHHHHHHHHHH
Q 011777          292 EVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN--GLPLGAVVTT-PEIANVMAQKIQFNTFGGNPVCSAGGLAVLR  366 (477)
Q Consensus       292 Ev~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~--G~pig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~  366 (477)
                      |+|...  .|...  ++   ...|++  +++|.++|  |+++||++++ +++.+.+...........+|+.+..++..|+
T Consensus       169 ~t~~~~--~~~~p--~~---~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~  241 (366)
T PRK07582        169 NTTATP--LGQRP--LE---LGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLG  241 (366)
T ss_pred             CCCCCc--cccCc--hh---cCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccc
Confidence            998521  12111  12   234666  57899976  6899999984 7777766543322233456777766666665


Q ss_pred             hhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee------------------eccceeEEEEEeeCCCCCCccHHHHHH
Q 011777          367 VIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV------------------RGRGLMVGMELVTDRKEKTPAKAETAV  428 (477)
Q Consensus       367 ~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v------------------~g~g~~~~i~~~~~~~~~~~~~~~~~~  428 (477)
                      .+  +-..++..++...+.+.|++.    +.+..|                  .+.|.++.+++. +          ..+
T Consensus       242 tl--~~R~~~~~~na~~la~~L~~~----p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~-~----------~~~  304 (366)
T PRK07582        242 TL--GLRFARQCANALAVAELLAGH----PAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA-D----------AAA  304 (366)
T ss_pred             cH--HHHHHHHHHHHHHHHHHHHhC----CCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC-C----------HHH
Confidence            33  233456666777776666643    322211                  246778888873 1          122


Q ss_pred             HHHHHHHcCceee---ccC--------------CCCCEEEEeCCCCCcHHHHHHHHHHHH
Q 011777          429 LFEKLRELGVLVG---KGG--------------LHGNVFRIKPPMCFTKDDADFLVDALD  471 (477)
Q Consensus       429 ~~~~l~~~Gv~v~---~~~--------------~~~~~iRi~p~~~~t~e~i~~~l~~l~  471 (477)
                      ..+.+.+.+++..   -|+              ..++.||++..+...++.|+.+.++|+
T Consensus       305 ~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~liR~svGlE~~~dli~dl~~al~  364 (366)
T PRK07582        305 AERFVAASRLVVAATSFGGVHTSADRRARWGDAVPEGFVRLSCGIEDTDDLVADLERALD  364 (366)
T ss_pred             HHHHHHhCCcceecccCCCccchhhhHHHcCCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Confidence            3334444444432   010              123679999888766555555555443

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.71  E-value=1.8e-15  Score=152.89  Aligned_cols=288  Identities=16%  Similarity=0.141  Sum_probs=169.7

Q ss_pred             ccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCC
Q 011777          132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI  211 (477)
Q Consensus       132 ~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  211 (477)
                      ..++.++...+++++|+++.+.  +.+++++||++|+..++....  .+++.||+....|.+.........         
T Consensus        55 y~r~~~p~~~~le~~la~l~g~--~~~v~~ssG~~Ai~~al~al~--~~Gd~Vi~~~~~y~~t~~~~~~~~---------  121 (390)
T PRK08133         55 YSRFTNPTVTMFQERLAALEGA--EACVATASGMAAILAVVMALL--QAGDHVVSSRSLFGSTVSLFEKIF---------  121 (390)
T ss_pred             eECCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEEccCcchhHHHHHHHHH---------
Confidence            4456788899999999999865  568899999999999987553  356778887766654322111000         


Q ss_pred             CCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777          212 PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD  291 (477)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  291 (477)
                      ...|+....++.      + |    .++++++++    +++++|++|.++++.|.+.+    +++|.++|++||+++|+|
T Consensus       122 ~~~G~~v~~vd~------~-d----~~~l~~~i~----~~tklV~ie~p~NptG~v~d----l~~I~~la~~~gi~livD  182 (390)
T PRK08133        122 ARFGIETTFVDL------T-D----LDAWRAAVR----PNTKLFFLETPSNPLTELAD----IAALAEIAHAAGALLVVD  182 (390)
T ss_pred             HHcCcEEEEECC------C-C----HHHHHHhcC----cCCeEEEEECCCCCCCCcCC----HHHHHHHHHHcCCEEEEE
Confidence            001222222111      1 1    467777775    46789999888888887776    899999999999999999


Q ss_pred             CcccCccCCCCCCccccccCCCccee--eecccccC-ccce-EEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHh
Q 011777          292 EVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-GLPL-GAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRV  367 (477)
Q Consensus       292 Ev~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pi-g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~  367 (477)
                      +++... ... ..  . ..|  .|++  +++|.+++ |.++ |++++++++++.+...........++..+..++..++.
T Consensus       183 ~t~~~~-~~~-~p--l-~~g--~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~g~~~~~~~a~~~l~gl~t  255 (390)
T PRK08133        183 NCFCTP-ALQ-QP--L-KLG--ADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTLSPFNAWVFLKGLET  255 (390)
T ss_pred             CCCccc-ccC-Cc--h-hhC--CcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHHHhCCCCCHHHHHHHHcccch
Confidence            998522 111 11  1 123  4655  57799986 7787 56777887766554322222233455555554444432


Q ss_pred             hchhhHHHHHHHHHHHHHHHHHHHHHhCCCce------------------eeeccceeEEEEEeeCCCCCCccHHHHHHH
Q 011777          368 IDKERRQAHCADVGSHLLGRLRTLQERHDIIG------------------DVRGRGLMVGMELVTDRKEKTPAKAETAVL  429 (477)
Q Consensus       368 l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~------------------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~  429 (477)
                      +.  ...++..++...+.+.|++    ++.+.                  ...|.|.|+.|++..+       .....++
T Consensus       256 l~--~R~~~~~~~a~~la~~L~~----~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~~-------~~~~~~f  322 (390)
T PRK08133        256 LS--LRMEAHSANALALAEWLEA----HPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGG-------REAAWRV  322 (390)
T ss_pred             HH--HHHHHHHHHHHHHHHHHHh----CCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCC-------HHHHHHH
Confidence            21  2233334444455555443    33221                  1246688888888421       1223445


Q ss_pred             HHHHHH--cCcee--------ecc---------------CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          430 FEKLRE--LGVLV--------GKG---------------GLHGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       430 ~~~l~~--~Gv~v--------~~~---------------~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      .+.|.=  .++-.        .|.               |...+.|||+..+    |+.+.+++-|+++|+
T Consensus       323 ~~~l~l~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~  389 (390)
T PRK08133        323 IDATRLISITANLGDTKTTITHPATTTHGRLSPEARAAAGITEGLIRVAVGL----EDVADIKADLARGLA  389 (390)
T ss_pred             HHhCCcceEeccCCCcceeeecCCCCCcccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHhh
Confidence            544431  11111        111               1124689997665    456667777777764

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.71  E-value=4.7e-15  Score=148.77  Aligned_cols=239  Identities=17%  Similarity=0.103  Sum_probs=149.9

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +...++.++...+|+++|+++.+.  +..++++||++|+..++.+   ..++++||+..+.|++..........      
T Consensus        44 ~~y~r~~~pt~~~le~~la~l~g~--~~~~~~~sG~~ai~~~~~l---l~~Gd~Vl~~~~~y~~t~~~~~~~~~------  112 (366)
T PRK08247         44 FDYSRTGNPTRGVLEQAIADLEGG--DQGFACSSGMAAIQLVMSL---FRSGDELIVSSDLYGGTYRLFEEHWK------  112 (366)
T ss_pred             ccccCCCCchHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHH---hCCCCEEEEecCCcCcHHHHHHHHhh------
Confidence            334567889999999999999865  4468899999999977642   23567899999999874322211100      


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                         ..|+.....+.      . |    .++++++++    +++++|++|..+|+.|.    ...+++|.++|++||+++|
T Consensus       113 ---~~G~~v~~vd~------~-d----~~~l~~~i~----~~tklv~le~P~NP~~~----~~dl~~I~~la~~~g~~lI  170 (366)
T PRK08247        113 ---KWNVRFVYVNT------A-S----LKAIEQAIT----PNTKAIFIETPTNPLMQ----ETDIAAIAKIAKKHGLLLI  170 (366)
T ss_pred             ---ccCceEEEECC------C-C----HHHHHHhcc----cCceEEEEECCCCCCCc----HHHHHHHHHHHHHcCCEEE
Confidence               01222222111      0 1    467777775    35778888776666553    3449999999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCcceeeecccccC--ccceEEEEeC-HHHHHhhcccccccCCCCcHHHHHHHHHHHH
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGN--GLPLGAVVTT-PEIANVMAQKIQFNTFGGNPVCSAGGLAVLR  366 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~--G~pig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~  366 (477)
                      +||+|... ..+ ..  .+ .+...-+.++||.++|  ++..|+++++ +++.+.+.......+...+|+.+..++..++
T Consensus       171 vD~t~~~~-~~~-~p--~~-~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~  245 (366)
T PRK08247        171 VDNTFYTP-VLQ-RP--LE-EGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMK  245 (366)
T ss_pred             EECCCccc-ccc-Cc--hh-cCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccC
Confidence            99998411 111 11  11 2332223368899996  4788999987 6677766543333444566777777666665


Q ss_pred             hhchhhHHHHHHHHHHHHHHHHHHHHHhCCCcee--eeccceeEEEEE
Q 011777          367 VIDKERRQAHCADVGSHLLGRLRTLQERHDIIGD--VRGRGLMVGMEL  412 (477)
Q Consensus       367 ~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~--v~g~g~~~~i~~  412 (477)
                      .+.  ...++.+++.+.+.+.|+    +++.+..  .++.|.|+.+++
T Consensus       246 tl~--~r~~~~~~~a~~l~~~L~----~~p~v~~v~~P~~gg~~sf~~  287 (366)
T PRK08247        246 TLA--LRMRQHEENAKAIAAFLN----EQPGVTDVLYPGRGGMLSFRL  287 (366)
T ss_pred             cHH--HHHHHHHHHHHHHHHHHH----hCCCeeEEecCCcCcEEEEEE
Confidence            332  233344555555555554    4554443  445688888876

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.70  E-value=5.9e-15  Score=149.23  Aligned_cols=239  Identities=14%  Similarity=0.137  Sum_probs=157.0

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +..+++.++...+|+++|+++.+.  +.+++++||++|+..++....  .+++.||+..+.|++.........       
T Consensus        56 ~~y~r~~~p~~~~le~~lA~l~g~--~~~i~~ssG~~Ai~~~l~all--~~GD~Vi~~~~~y~~~~~~~~~~~-------  124 (398)
T PRK08249         56 HIYSRNTNPTVQAFEEKVRILEGA--EAATAFSTGMAAISNTLYTFL--KPGDRVVSIKDTYGGTNKIFTEFL-------  124 (398)
T ss_pred             ccccCCCChHHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhc--CCCCEEEEcCCchHHHHHHHHHHH-------
Confidence            444567788999999999999864  567889999999999887543  356789999999876422111100       


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                        ...|+.....+.     .  |    .++++++++    +++++|++|.+++++|.+.+    +++|.++|++||+++|
T Consensus       125 --~~~Gi~v~~vd~-----~--d----~e~l~~~i~----~~tklV~ie~p~NPtg~v~d----l~~I~~la~~~gi~li  183 (398)
T PRK08249        125 --PRMGVDVTLCET-----G--D----HEQIEAEIA----KGCDLLYLETPTNPTLKIVD----IERLAAAAKKVGALVV  183 (398)
T ss_pred             --hhCCeEEEEcCC-----C--C----HHHHHHhcC----CCCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEE
Confidence              001222221111     0  1    467877775    35788988887788887776    9999999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCccee--eecccccC-ccce-EEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHH
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-GLPL-GAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVL  365 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pi-g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l  365 (477)
                      +|++|..+.. . ..     .....|++  +++|.+++ |..+ |++++++++++.+...........+++.++.++..+
T Consensus       184 vD~t~a~~~~-~-~~-----l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l  256 (398)
T PRK08249        184 VDNTFATPIN-Q-NP-----LALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREINGATMDPMSAYLILRGM  256 (398)
T ss_pred             EECCcCcccc-C-Cc-----hhhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhCc
Confidence            9999874321 1 11     12234555  57899986 5555 677788888887765444344556787777777777


Q ss_pred             HhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCce------------------eeeccceeEEEEEe
Q 011777          366 RVIDKERRQAHCADVGSHLLGRLRTLQERHDIIG------------------DVRGRGLMVGMELV  413 (477)
Q Consensus       366 ~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~------------------~v~g~g~~~~i~~~  413 (477)
                      +.+.  ...++..++.+.+.+.|++    ++.+.                  ...|.|.++.+++.
T Consensus       257 ~tL~--~R~~~~~~na~~la~~L~~----~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~  316 (398)
T PRK08249        257 KTLK--LRVRQQQESAMALAKYLQT----HPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLK  316 (398)
T ss_pred             chHH--HHHHHHHHHHHHHHHHHHc----CCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEc
Confidence            6552  2345555566666665553    33221                  12366888888884

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.70  E-value=4.4e-15  Score=150.52  Aligned_cols=256  Identities=13%  Similarity=0.067  Sum_probs=161.3

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +.+.+|.++...+|+++|+++.+.  +.+++++||++|+..++....  .+++.||+..+.|.+.........       
T Consensus        56 ~~Y~r~~~p~~~~Le~~iA~~~g~--~~~l~~~sG~~Ai~~al~~ll--~~Gd~Vl~~~~~y~~~~~~~~~~~-------  124 (400)
T PRK06234         56 YIYSRLGNPTSTEVENKLALLEGG--EAAVVAASGMGAISSSLWSAL--KAGDHVVASDTLYGCTFALLNHGL-------  124 (400)
T ss_pred             CcccCCCCccHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHHHh--CCCCEEEEecCccchHHHHHHHHH-------
Confidence            334566788899999999999864  468899999999998886443  356778887776644322211100       


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHh--CcE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKA--GGV  287 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~--gil  287 (477)
                        ...|+....++.      . |    ++++++.++    +++++|++|.++|++|.+.+    +++|.++|+++  |++
T Consensus       125 --~~~G~~v~~vd~------~-d----~e~l~~~i~----~~tklI~iesP~NPtG~v~d----l~~I~~la~~~~~~i~  183 (400)
T PRK06234        125 --TRYGVEVTFVDT------S-N----LEEVRNALK----ANTKVVYLETPANPTLKVTD----IKAISNIAHENNKECL  183 (400)
T ss_pred             --hhCCeEEEEECC------C-C----HHHHHHHhc----cCCeEEEEECCCCCCCCcCC----HHHHHHHHHhcCCCCE
Confidence              001232222211      0 1    477888775    35788999988888887766    99999999997  999


Q ss_pred             EEEcCcccCccCCCCCCccccccCCCccee--eecccccC-ccce-EEEEeCHHHHHhhccc--ccccCCCCcHHHHHHH
Q 011777          288 CIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-GLPL-GAVVTTPEIANVMAQK--IQFNTFGGNPVCSAGG  361 (477)
Q Consensus       288 lI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pi-g~v~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa  361 (477)
                      +|+||+|... ..+ ...     +...|++  +++|.+++ |.++ |++++++++++.++..  ....+...+|+.++.+
T Consensus       184 livDea~~~~-~~~-~~l-----~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~~g~~l~p~~a~l~  256 (400)
T PRK06234        184 VFVDNTFCTP-YIQ-RPL-----QLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLI  256 (400)
T ss_pred             EEEECCCCch-hcC-Cch-----hhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            9999998733 112 111     2234555  57899986 7665 8999999988877532  1122345677777777


Q ss_pred             HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCce------------------eeeccceeEEEEEeeCCCCCCccH
Q 011777          362 LAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIG------------------DVRGRGLMVGMELVTDRKEKTPAK  423 (477)
Q Consensus       362 ~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~------------------~v~g~g~~~~i~~~~~~~~~~~~~  423 (477)
                      +..|+.+  +...++..++..++.+.|.+    ++.+.                  ...+.|.++.+++...       .
T Consensus       257 ~~~l~tl--~~r~~~~~~na~~~a~~L~~----~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~-------~  323 (400)
T PRK06234        257 IRGMKTL--QIRMEKHCKNAMKVAKFLES----HPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGG-------V  323 (400)
T ss_pred             HhccCcH--HHHHHHHHHHHHHHHHHHHc----CCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCc-------H
Confidence            7666543  23445555666666665543    33221                  1235677888887421       1


Q ss_pred             HHHHHHHHHHHHcC
Q 011777          424 AETAVLFEKLRELG  437 (477)
Q Consensus       424 ~~~~~~~~~l~~~G  437 (477)
                      ....++.+.|.-.+
T Consensus       324 ~~~~~f~~~l~~~~  337 (400)
T PRK06234        324 EEGKVVMNNVKLAT  337 (400)
T ss_pred             HHHHHHHHhCCcce
Confidence            23456666665443

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.70  E-value=1e-14  Score=146.91  Aligned_cols=239  Identities=19%  Similarity=0.143  Sum_probs=155.5

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +..+++.++...+|+++|+++.+.  +.+++++||++|+..++....  .++++|++.++.|++...........     
T Consensus        44 ~~Y~R~~~pt~~~L~~~lA~l~g~--~~~i~~~sg~~Ai~~~l~~l~--~~GD~Vl~~~~~y~~~~~~~~~~~~~-----  114 (386)
T PRK08045         44 HDYSRRGNPTRDVVQRALAELEGG--AGAVLTNTGMSAIHLVTTVFL--KPGDLLVAPHDCYGGSYRLFDSLAKR-----  114 (386)
T ss_pred             ceeeCCCCccHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHHc--CCCCEEEEcCCCcHHHHHHHHHHHhh-----
Confidence            345577889999999999999864  469999999999999887543  36678999999998643221111100     


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                          .++.....+     ..  |    .++++++++    +++++|++|..+|++|.+.+    +++|.++|+++|+++|
T Consensus       115 ----~gi~v~~vd-----~~--d----~e~l~~~l~----~~tklV~l~sP~NPtG~v~d----i~~I~~ia~~~g~~vi  171 (386)
T PRK08045        115 ----GCYRVLFVD-----QG--D----EQALRAALA----EKPKLVLVESPSNPLLRVVD----IAKICHLAREAGAVSV  171 (386)
T ss_pred             ----CCeEEEEeC-----CC--C----HHHHHHhcc----cCCeEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEE
Confidence                111111111     01  1    367777765    36788888888888887776    8999999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCccee--eecccccC--ccceEEEEe-CHHHHHhhcccccccCCCCcHHHHHHHHHH
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN--GLPLGAVVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAV  364 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~--G~pig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~  364 (477)
                      +||+|..... . ..     .....|++  +++|.++|  +...|++++ ++++.+.+.......+...+|+.+..++..
T Consensus       172 vDeay~~~~~-~-~p-----l~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rg  244 (386)
T PRK08045        172 VDNTFLSPAL-Q-NP-----LALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRG  244 (386)
T ss_pred             EECCCCcccc-C-Cc-----hhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhh
Confidence            9999874321 1 11     12233655  57899985  477888877 577776665433334455778888777777


Q ss_pred             HHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCcee------------------eeccceeEEEEEe
Q 011777          365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGD------------------VRGRGLMVGMELV  413 (477)
Q Consensus       365 l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~~  413 (477)
                      |+.+.  ...++..++...+.+.|++    +|.+..                  ..|.|.++.+++.
T Consensus       245 l~tl~--~R~~~~~~na~~la~~L~~----~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~  305 (386)
T PRK08045        245 LRTLV--PRMELAQRNAQAIVKYLQT----QPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD  305 (386)
T ss_pred             hccHH--HHHHHHHHHHHHHHHHHHc----CCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEec
Confidence            76432  2234445555555555443    333221                  2466888888884

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.70  E-value=4e-15  Score=150.65  Aligned_cols=237  Identities=18%  Similarity=0.146  Sum_probs=150.8

Q ss_pred             ccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCC
Q 011777          132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI  211 (477)
Q Consensus       132 ~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  211 (477)
                      .++|.++...+|+++|+++.+.  +.+++++||+.|+..++....  .++++||+....|.+..........        
T Consensus        64 Y~r~~~p~~~~le~~lA~l~g~--~~al~~~sG~~Ai~~~l~all--~~Gd~Vl~~~~~~~~t~~~~~~~~~--------  131 (403)
T PRK07810         64 YSRYGNPTVSMFEERLRLIEGA--EACFATASGMSAVFTALGALL--GAGDRLVAARSLFGSCFVVCNEILP--------  131 (403)
T ss_pred             eeCCCCchHHHHHHHHHHHhCC--CcEEEECChHHHHHHHHHHHh--CCCCEEEEccCCcchHHHHHHHHHH--------
Confidence            4567888899999999999864  578899999999999887543  3567787766544332211111000        


Q ss_pred             CCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777          212 PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD  291 (477)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  291 (477)
                       ..|+....++.      . |    .++++++++    +++++|++|.+.|+.|.+.+    +++|.++|+++|+++|+|
T Consensus       132 -~~G~~v~~vd~------~-d----~~~l~~ai~----~~tklV~~esp~Nptg~v~d----l~~I~~la~~~g~~vivD  191 (403)
T PRK07810        132 -RWGVETVFVDG------E-D----LSQWEEALS----VPTQAVFFETPSNPMQSLVD----IAAVSELAHAAGAKVVLD  191 (403)
T ss_pred             -HcCcEEEEECC------C-C----HHHHHHhcC----cCceEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEE
Confidence             01222222111      0 1    477888775    36789999988888887776    999999999999999999


Q ss_pred             CcccCccCCCCCCccccccCCCccee--eecccccC-ccce-EEEEeCHHHHH-hhcccccccCCCCcHHHHHHHHHHHH
Q 011777          292 EVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-GLPL-GAVVTTPEIAN-VMAQKIQFNTFGGNPVCSAGGLAVLR  366 (477)
Q Consensus       292 Ev~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pi-g~v~~~~~~~~-~~~~~~~~~t~~~~~~~~aaa~a~l~  366 (477)
                      |+|... ... .  +.+ .|  .|++  +++|.+++ |.++ |+++++++.+. .+...........+|+.++.++..|+
T Consensus       192 ~a~a~~-~~~-~--~~~-~g--aDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~  264 (403)
T PRK07810        192 NVFATP-LLQ-R--GLP-LG--ADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLE  264 (403)
T ss_pred             CCCCcc-ccC-C--hhh-cC--CcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHhccC
Confidence            998621 111 1  111 23  4666  46799987 7776 77888877554 33322122223467888888777776


Q ss_pred             hhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee------------------eccceeEEEEEe
Q 011777          367 VIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV------------------RGRGLMVGMELV  413 (477)
Q Consensus       367 ~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v------------------~g~g~~~~i~~~  413 (477)
                      .+.  ...++..++..++.+.|++    ++.+..|                  .+.|.++.+++.
T Consensus       265 tl~--~R~~~~~~~a~~~a~~L~~----~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~  323 (403)
T PRK07810        265 TLA--LRVRHSNASALRIAEFLEG----HPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELD  323 (403)
T ss_pred             cHH--HHHHHHHHHHHHHHHHHhc----CCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEc
Confidence            543  3344555555555555543    3433322                  266888888884

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.70  E-value=6.1e-15  Score=149.01  Aligned_cols=294  Identities=18%  Similarity=0.117  Sum_probs=172.4

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +.++++.++...+|+++++++.+.  +.+++++||++|+.+++....  .+++.||+..+.|.+..........      
T Consensus        57 ~~Y~r~~~pt~~~Le~~lA~l~g~--~~~l~~~sgt~Ai~~~l~al~--~~GD~Vl~~~~~y~~~~~~~~~~~~------  126 (394)
T PRK07050         57 WRYGLHATPTSLALAQRLAEIEGG--RHALLQPSGLAAISLVYFGLV--KAGDDVLIPDNAYGPNRDHGEWLAR------  126 (394)
T ss_pred             cccCCCCCHHHHHHHHHHHHHhCC--CeEEEeccHHHHHHHHHHHHh--CCCCEEEEecCCcccHHHHHHHHHH------
Confidence            345567888899999999999854  689999999999999997653  3678899999888764321100000      


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                         ..|+....++..       +    .++++++++    +++++|++|...|+.|.    ...+++|.++|+++|+++|
T Consensus       127 ---~~Gi~v~~vd~~-------~----~~~l~~~i~----~~tklV~le~p~Np~~~----~~di~~I~~ia~~~gi~li  184 (394)
T PRK07050        127 ---DFGITVRFYDPL-------I----GAGIADLIQ----PNTRLIWLEAPGSVTME----VPDVPAITAAARARGVVTA  184 (394)
T ss_pred             ---hcCeEEEEECCC-------C----HHHHHHhcC----CCCeEEEEECCCCCCcc----HhhHHHHHHHHHHcCCEEE
Confidence               012222222110       1    256777775    45788888877776654    3449999999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCccee--eecccccCc--cceEEEEe-CHHHHHhhcccccccCCCCcHHHHHHHHHH
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGNG--LPLGAVVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAV  364 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G--~pig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~  364 (477)
                      +|++|..    |....+.+ .|  .|++  +++|.++||  .+.|++++ ++++.+.+.........+.+|..+..++..
T Consensus       185 vD~a~a~----~~~~~~l~-~G--aDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~  257 (394)
T PRK07050        185 IDNTYSA----GLAFKPFE-HG--VDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRG  257 (394)
T ss_pred             EECCccc----ccccCHHH-cC--CeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcC
Confidence            9999862    20111111 23  3655  578999864  67888777 577777665433222234455554444333


Q ss_pred             HHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCcee------------------eeccceeEEEEEeeCCCCCCccHHHH
Q 011777          365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGD------------------VRGRGLMVGMELVTDRKEKTPAKAET  426 (477)
Q Consensus       365 l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~~~~~~~~~~~~~~~  426 (477)
                      |+.+.  ...++..++..++.+.|.+    ++.+..                  ..+.|.++.+++..+.     .....
T Consensus       258 l~tl~--~Rl~~~~~~a~~la~~L~~----~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~-----~~~~~  326 (394)
T PRK07050        258 LPSLQ--VRLAAHDRSALEVAEWLKA----RPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERY-----SPAQV  326 (394)
T ss_pred             CCcHH--HHHHHHHHHHHHHHHHHHh----CCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCC-----CHHHH
Confidence            32221  1233344444444444443    332211                  1245666667663210     12345


Q ss_pred             HHHHHHHHHcCceeeccC-------------------CCCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          427 AVLFEKLRELGVLVGKGG-------------------LHGNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       427 ~~~~~~l~~~Gv~v~~~~-------------------~~~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      .++.+.|...++.+.-|+                   ..++.|||+..+...++-++.+.++|+.+
T Consensus       327 ~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~iR~svGlE~~~dl~~dl~~al~~~  392 (394)
T PRK07050        327 DAFVEALELFAIGWSWGGACSLAMPYDVASMRTAKWPHRGTLVRLYIGLEDEADLIADLEQALEAA  392 (394)
T ss_pred             HHHHHcCCCCeeccccCCccceEeeCcccccchhhcCCCCCEEEEEeCcCCHHHHHHHHHHHHHHh
Confidence            677777766554332221                   12367999877755444444554555444

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.69  E-value=6.1e-15  Score=148.95  Aligned_cols=296  Identities=16%  Similarity=0.085  Sum_probs=178.8

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +...++.++...+|+++|+++.+.  +..++++||+.|+.+++....  .+++.||+..+.|.+.........       
T Consensus        51 ~~y~r~~~p~~~~le~~lA~l~g~--~~av~~~sG~~Ai~~~l~al~--~~Gd~Vi~~~~~y~~t~~~~~~~~-------  119 (391)
T TIGR01328        51 YIYSRLGNPTVSNLEGRIAFLEGT--EAAVATSSGMGAIAATLLTIL--KAGDHLISDECLYGCTFALLEHAL-------  119 (391)
T ss_pred             CceeCCCCchHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEEecCcchHHHHHHHHHH-------
Confidence            445567788899999999999865  457899999999998886542  356778887776654322111110       


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                        ...|+....++.      + |    .+++++.+.    +++++|++|.++++.|.+.+    +++|.++|+++|+++|
T Consensus       120 --~~~G~~~~~vd~------~-d----~e~l~~~i~----~~tklV~le~p~Np~G~v~d----l~~I~~la~~~gi~li  178 (391)
T TIGR01328       120 --TKFGIQVDFINM------A-I----PEEVKAHIK----DNTKIVYFETPANPTMKLID----MERVCRDAHSQGVKVI  178 (391)
T ss_pred             --hcCCeEEEEECC------C-C----HHHHHHhhc----cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEE
Confidence              011322222111      1 1    467777775    46788999988888887766    9999999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCccee--eecccccC-ccc-eEEEEeCHHHHHhhcccc--cccCCCCcHHHHHHHHH
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-GLP-LGAVVTTPEIANVMAQKI--QFNTFGGNPVCSAGGLA  363 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~p-ig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a  363 (477)
                      +||++.. +..+ ..     .+...|++  +++|.+++ |.+ .|++++++++++.++...  ...+...+++.++.++.
T Consensus       179 vD~a~a~-~~~~-~~-----~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~  251 (391)
T TIGR01328       179 VDNTFAT-PMLT-NP-----VALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILR  251 (391)
T ss_pred             EECCCch-hccC-Cc-----hhcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHh
Confidence            9999862 2222 11     12235555  57799996 665 577888899887776321  11123345666666666


Q ss_pred             HHHhhchhhHHHHHHHHHHHHHHHHHHHHH----hCCCc----------eeeeccceeEEEEEeeCCCCCCccHHHHHHH
Q 011777          364 VLRVIDKERRQAHCADVGSHLLGRLRTLQE----RHDII----------GDVRGRGLMVGMELVTDRKEKTPAKAETAVL  429 (477)
Q Consensus       364 ~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~----~~~~~----------~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~  429 (477)
                      .|+.+  +...++..++.+++.+.|++...    .||..          ...++.|.++.|++..+       .....++
T Consensus       252 ~L~tl--~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~~-------~~~~~~f  322 (391)
T TIGR01328       252 GLKTL--NIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGG-------FAGAKKL  322 (391)
T ss_pred             CcCcH--HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCCC-------HHHHHHH
Confidence            55543  23355566667777666654210    11111          01245677888887421       1223445


Q ss_pred             HHHHHH--cCcee--------ecc---------------CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          430 FEKLRE--LGVLV--------GKG---------------GLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       430 ~~~l~~--~Gv~v--------~~~---------------~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      .+.|.=  .+.-.        .|.               |...+.|||+..+    ||.+.+++-|++++++|
T Consensus       323 ~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~~~  391 (391)
T TIGR01328       323 LNNLKLIRLAVSLGDAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGL----EDADDLIADLKQALDAL  391 (391)
T ss_pred             HHhCCcceEecCCCCCcccCcCCCccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHHhhC
Confidence            544431  11111        010               1123579997665    56777788888887654

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.69  E-value=7.7e-15  Score=147.66  Aligned_cols=289  Identities=18%  Similarity=0.183  Sum_probs=179.3

Q ss_pred             ccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCC
Q 011777          132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI  211 (477)
Q Consensus       132 ~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  211 (477)
                      .++|.++...+|+++|+++.+.  +.+++++||++|+..++....  .+++.|++..++|.+...........       
T Consensus        45 Y~R~~~p~~~~le~~lA~l~g~--~~v~~~~gg~~Ai~~~l~all--~~GD~Vl~~~p~y~~~~~~~~~~~~~-------  113 (382)
T TIGR02080        45 YSRSGNPTRDLLQQALAELEGG--AGAVVTNTGMSAIHLVTTALL--GPDDLLVAPHDCYGGTYRLLNALAKK-------  113 (382)
T ss_pred             ccCCCCchHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHHHc--CCCCEEEEcCCCcHHHHHHHHHHHhh-------
Confidence            4567889999999999998863  679999999999999987653  36678999999997643221111110       


Q ss_pred             CCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777          212 PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD  291 (477)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  291 (477)
                        .++.....+.       .|    .++++++++    +++++|+++..++++|.+.+    +++|.++|+++|+++|+|
T Consensus       114 --~~~~v~~~d~-------~d----~~~l~~ai~----~~tklV~l~~p~NPtG~~~d----l~~I~~la~~~g~~vvvD  172 (382)
T TIGR02080       114 --GCFRVLFVDQ-------GD----EQALRAALA----QKPKLVLIETPSNPLLRVVD----IAKICHLAKAVGAVVVVD  172 (382)
T ss_pred             --cCeEEEEECC-------CC----HHHHHHhcC----cCceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEE
Confidence              1111111110       01    467777775    35788888888888887776    899999999999999999


Q ss_pred             CcccCccCCCCCCccccccCCCccee--eecccccC--ccceEEEEe-CHHHHHhhcccccccCCCCcHHHHHHHHHHHH
Q 011777          292 EVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN--GLPLGAVVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLR  366 (477)
Q Consensus       292 Ev~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~--G~pig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~  366 (477)
                      |+|..+...  ..  .. .+  .|++  +++|.++|  ++..|++++ ++++.+.+.......+...+|+.+..++..++
T Consensus       173 ~a~~~~~~~--~p--l~-~g--aDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~  245 (382)
T TIGR02080       173 NTFLSPALQ--NP--LA-LG--ADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLR  245 (382)
T ss_pred             CCCcccccC--Cc--hh-hC--CCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHcccc
Confidence            999633111  11  11 23  3655  57899985  578899877 57777766544333445677888777766665


Q ss_pred             hhchhhHHHHHHHHHHHHHHHHHHHHHhCCCce------------------eeeccceeEEEEEeeCCCCCCccHHHHHH
Q 011777          367 VIDKERRQAHCADVGSHLLGRLRTLQERHDIIG------------------DVRGRGLMVGMELVTDRKEKTPAKAETAV  428 (477)
Q Consensus       367 ~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~------------------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~  428 (477)
                      .+..  ..++..++...+.+.|+    .+|.+.                  ...|.|.++.+++..+       ......
T Consensus       246 tl~~--R~~~~~~na~~~a~~L~----~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~-------~~~~~~  312 (382)
T TIGR02080       246 TLVA--RMRLQQRNAQAIVEYLQ----TQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGG-------EQTVRR  312 (382)
T ss_pred             hHHH--HHHHHHHHHHHHHHHHH----hCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecCc-------HHHHHH
Confidence            4432  23444455555555554    334322                  1246688888888421       112334


Q ss_pred             HHHHHHHcCceee----------cc---------------CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          429 LFEKLRELGVLVG----------KG---------------GLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       429 ~~~~l~~~Gv~v~----------~~---------------~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +.+.|.=-.+.+.          |.               |...+.|||+..+    |+.+.+++-|++++++
T Consensus       313 f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl----E~~~dl~~dl~~al~~  381 (382)
T TIGR02080       313 FLGGLSLFTLAESLGGVESLIAHPATMTHAAMGPEARAEAGISDTLLRLSVGL----EDADDLIADLEQGLRA  381 (382)
T ss_pred             HHHcCCcceEeccCCCCcceeECCCccCcccCCHHHHHhcCCCcCeEEEEecc----CCHHHHHHHHHHHHhh
Confidence            5544431111111          10               1123679997665    4566677777777653

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.69  E-value=1.8e-14  Score=149.43  Aligned_cols=324  Identities=17%  Similarity=0.153  Sum_probs=186.9

Q ss_pred             CCCHHHHHHHHHHHhhccc-cc-----cccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc------c
Q 011777          112 HCHPDVLNAIFEQSKLLQH-AT-----TIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS------T  179 (477)
Q Consensus       112 h~~p~v~~Av~~~l~~~~~-~~-----~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~------~  179 (477)
                      |.+|.|++++.+......+ ..     ..+..+.+.++.++++++++.+ ...++.++|+.+...++.+++.+      +
T Consensus        81 ~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~-~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~  159 (481)
T PRK04366         81 KYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMD-AVTLQPAAGAHGELTGLLMIRAYHEARGDT  159 (481)
T ss_pred             CCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCC-ceEEEeCcHHHHHHHHHHHHHHHhhccCcC
Confidence            4678888888775221111 11     1112345678888888888654 33455567777776655544331      1


Q ss_pred             CCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecc
Q 011777          180 GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAET  259 (477)
Q Consensus       180 ~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~ep  259 (477)
                      ++++|++.++.|+.+... ....            |+..+.+|...  .+..|    +++|+++++    +++++|++..
T Consensus       160 ~~~~Vlv~~~~hp~~~~~-~~~~------------G~~vv~v~~~~--~~~~D----~e~L~~~i~----~~t~~V~v~~  216 (481)
T PRK04366        160 KRTEVIVPDSAHGTNPAS-AAMA------------GFKVVEIPSNE--DGLVD----LEALKAAVG----EDTAALMLTN  216 (481)
T ss_pred             CCCEEEEcCCccHhHHHH-HHHc------------CCEEEEeecCC--CCCcC----HHHHHhhcc----cCCeEEEEeC
Confidence            345788877766554432 2221            22222222211  11111    477777775    3566665554


Q ss_pred             cCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeee--ccccc-----CccceEEE
Q 011777          260 IQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTM--AKGIG-----NGLPLGAV  332 (477)
Q Consensus       260 i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~--sK~lg-----~G~pig~v  332 (477)
                      .+ ++|.+   ...+++|.++|+++|+++|+|+++. .+..| . .....+|  .|++++  .|.++     ||..+|++
T Consensus       217 Pn-~tG~~---~~dl~eI~~~a~~~gal~iVD~a~~-~~~~g-~-~~~~~~G--aD~~~~~~hK~l~~P~g~Ggp~~G~l  287 (481)
T PRK04366        217 PN-TLGLF---ERNILEIAEIVHEAGGLLYYDGANL-NAILG-K-ARPGDMG--FDVVHLNLHKTFSTPHGGGGPGSGPV  287 (481)
T ss_pred             CC-Ccccc---chHHHHHHHHHHHcCCEEEEEecCh-hhhcc-c-CCccccC--CCEEEEechhhcCCCCCCCCCCeeee
Confidence            33 55644   2238999999999999999999985 32223 1 1112233  587765  49887     34567888


Q ss_pred             EeCHHHHHhhcccc-------------------cccCCCCcHHHHHHHHHHHHhhchhhH---HHHHHHHHHHHHHHHHH
Q 011777          333 VTTPEIANVMAQKI-------------------QFNTFGGNPVCSAGGLAVLRVIDKERR---QAHCADVGSHLLGRLRT  390 (477)
Q Consensus       333 ~~~~~~~~~~~~~~-------------------~~~t~~~~~~~~aaa~a~l~~l~~~~~---~~~~~~~~~~l~~~L~~  390 (477)
                      .+++++.+.+....                   ..-.++++.+...++...+..+..+.+   .++...+.++++++|.+
T Consensus       288 ~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~  367 (481)
T PRK04366        288 GVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKD  367 (481)
T ss_pred             eehhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            89988777663210                   001122345555666666666555544   35556678899998887


Q ss_pred             HHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC---CCCCEEEEeCCCCCcHHHHHHHH
Q 011777          391 LQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG---LHGNVFRIKPPMCFTKDDADFLV  467 (477)
Q Consensus       391 l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---~~~~~iRi~p~~~~t~e~i~~~l  467 (477)
                      +   +.+...  + ..+..+.+....- . ..+....++.+.|.++|+.+....   ...+.+|+++...+|++|||.++
T Consensus       368 ~---~~~~~~--~-~~~~~~~~~~~~~-~-~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e~~t~edid~l~  439 (481)
T PRK04366        368 I---YDLPYD--R-PCMHEFVLSGKKL-K-ETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTETESKETLDAFI  439 (481)
T ss_pred             h---CcccCC--C-CeeEEEEEECccc-c-ccCCCHHHHHHHHHHCCccCCccccccccCCeEEEcccCCCCHHHHHHHH
Confidence            6   222211  1 1111111111000 0 001125679999999999875221   12568999999999999999999


Q ss_pred             HHHHHHHhh
Q 011777          468 DALDYSMSK  476 (477)
Q Consensus       468 ~~l~~~l~~  476 (477)
                      +.|+++.++
T Consensus       440 ~~l~~i~~~  448 (481)
T PRK04366        440 AAMKQIAEE  448 (481)
T ss_pred             HHHHHHHHH
Confidence            999988653

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.69  E-value=2.1e-14  Score=144.31  Aligned_cols=309  Identities=14%  Similarity=0.074  Sum_probs=185.7

Q ss_pred             HHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCC
Q 011777          115 PDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGG  194 (477)
Q Consensus       115 p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~  194 (477)
                      ++..+++.+.+.....+   ...+...++++++++.++  .+.+++++||++|+..+++.. ...+++.||+...+|.+.
T Consensus        11 ~~e~~a~~~~~~~~~~~---~~g~~~~~~e~~la~~~g--~~~~v~~~sgt~aL~~~l~al-~~~pGd~Viv~~~t~~~~   84 (376)
T TIGR02379        11 GQELEYIAEAISEGKLS---GDGPFSRRCETWLENRTG--TKKALLTPSCTAALEMAALLL-DIQPGDEVIMPSYTFVST   84 (376)
T ss_pred             HHHHHHHHHHHHcCCcc---CCcHHHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHc-CCCCcCEEEECCCCcHHH
Confidence            55677888877654321   134668899999999874  478999999999999988754 234678899988888765


Q ss_pred             cccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhH
Q 011777          195 SSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYL  274 (477)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l  274 (477)
                      .......             |...+.++.... .++.|    .++++++++    .++++|+  |++ ..|...+    +
T Consensus        85 ~~~~~~~-------------G~~~v~vd~d~~-~~~~d----~~~le~~i~----~~tk~Ii--p~~-~~G~~~d----~  135 (376)
T TIGR02379        85 ANAFVLR-------------GAKIVFVDIRPD-TMNID----ETLIESAIT----HRTKAIV--PVH-YAGVACD----M  135 (376)
T ss_pred             HHHHHHc-------------CCEEEEEecCCC-cCCCC----HHHHHHhcC----cCceEEE--EeC-CCCCccC----H
Confidence            4433322             222222221111 12222    467777775    3566776  443 3455554    8


Q ss_pred             HHHHHHHHHhCcEEEEcCcccCcc-CCCCCCccccccCCCcceeeec----ccccCccceEEEEeC-HHHHHhhccccc-
Q 011777          275 KLVYDIVRKAGGVCIADEVQTGFG-RTGSHYWGFETQGVIPDIVTMA----KGIGNGLPLGAVVTT-PEIANVMAQKIQ-  347 (477)
Q Consensus       275 ~~l~~l~~~~gillI~DEv~~gfg-r~G~~~~~~~~~gv~pDivt~s----K~lg~G~pig~v~~~-~~~~~~~~~~~~-  347 (477)
                      ++|.++|++||+++|.|++|+-.. ..|      ...|..-|+.+||    |.+..|.+.|+++++ +++.+.++.... 
T Consensus       136 ~~I~~la~~~~i~vIeDaa~~~g~~~~~------~~~g~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~~~~~  209 (376)
T TIGR02379       136 DTIMALANKHQLFVIEDAAQGVMSTYKG------RALGSIGHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEIIREK  209 (376)
T ss_pred             HHHHHHHHHCCCEEEEECccccCCccCC------cccCCCCCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHHHHHh
Confidence            999999999999999999997322 222      1223344788888    999888788988876 777776653211 


Q ss_pred             --------------------ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhC--CCceeeecc-
Q 011777          348 --------------------FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERH--DIIGDVRGR-  404 (477)
Q Consensus       348 --------------------~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~--~~~~~v~g~-  404 (477)
                                          +..+..+.+.++.+++.|+.+  +++.++-++..++..+.|..+....  .......+. 
T Consensus       210 g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l--~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~  287 (376)
T TIGR02379       210 GTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQA--DRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQ  287 (376)
T ss_pred             CCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCe
Confidence                                111222355556666666654  3345555566666666665542110  000001111 


Q ss_pred             c--eeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC----C------C--------------CCEEEEeCCCCC
Q 011777          405 G--LMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG----L------H--------------GNVFRIKPPMCF  458 (477)
Q Consensus       405 g--~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~------~--------------~~~iRi~p~~~~  458 (477)
                      .  .++.+.+..        ....+++.+.|.++||.+....    .      +              .+.|.+=.....
T Consensus       288 ~~~~~~~i~~~~--------~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l  359 (376)
T TIGR02379       288 HNAHMFYIKLKD--------EDDRNELIKYLKEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGL  359 (376)
T ss_pred             eeeEEEEEEECC--------cCCHHHHHHHHHHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCC
Confidence            1  122333311        0124688999999999765210    0      0              123444223347


Q ss_pred             cHHHHHHHHHHHHHHH
Q 011777          459 TKDDADFLVDALDYSM  474 (477)
Q Consensus       459 t~e~i~~~l~~l~~~l  474 (477)
                      |++|+++.++.|.+++
T Consensus       360 ~~~~~~~i~~~i~~~~  375 (376)
T TIGR02379       360 SKEDQARVIQTICDYL  375 (376)
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999998865

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.69  E-value=3.1e-15  Score=150.00  Aligned_cols=293  Identities=14%  Similarity=0.093  Sum_probs=176.2

Q ss_pred             cccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCC
Q 011777          133 TIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP  212 (477)
Q Consensus       133 ~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  212 (477)
                      ++..+|....|+++|+++.+.  +.+++++||++|+..++...  ..++++||+.++.|++.........  .       
T Consensus        45 ~r~gnPt~~~lE~~lA~l~g~--~~~~~~~sG~~Ai~~al~al--l~~GD~Vl~~~~~y~~t~~~~~~~~--~-------  111 (377)
T TIGR01324        45 GRRGTLTHFALQDAMCELEGG--AGCYLYPSGLAAVTNSILAF--VKAGDHVLMVDSAYEPTRYFCDIVL--K-------  111 (377)
T ss_pred             cCCCCccHHHHHHHHHHHhCC--CcEEEECcHHHHHHHHHHHh--cCCCCEEEEcCCCcHHHHHHHHHHH--H-------
Confidence            345678888999999998864  57889999999999998755  2356788888999987532111000  0       


Q ss_pred             CCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcC
Q 011777          213 QGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADE  292 (477)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  292 (477)
                      ..++....+.      .. +    .+++++.++    +++++|++|.+.++.|.+.+    +++|.++|+++|+++|+|+
T Consensus       112 ~~gi~v~~~d------~~-~----~e~l~~~i~----~~tklV~lesp~Np~g~~~d----l~~I~~la~~~g~~livD~  172 (377)
T TIGR01324       112 RMGVDITYYD------PL-I----GEDIATLIQ----PNTKVLFLEAPSSITFEIQD----IPAIAKAARNPGIVIMIDN  172 (377)
T ss_pred             hcCcEEEEEC------CC-C----HHHHHHhcC----CCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEEC
Confidence            0122211110      01 1    156777665    46889999988888876665    9999999999999999999


Q ss_pred             cccCccCCCCCCccccccCCCcceee--ecccccC--ccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhh
Q 011777          293 VQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGN--GLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVI  368 (477)
Q Consensus       293 v~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~--G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l  368 (477)
                      +|+ .|... ..     .....|+++  ++|.++|  +.-.|+++++++.++.+...........+|..+...+..++.+
T Consensus       173 t~a-~g~~~-~p-----l~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~tl  245 (377)
T TIGR01324       173 TWA-AGLLF-KP-----LEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDADDAYTTLRGLRTL  245 (377)
T ss_pred             CCc-ccccc-Cc-----cccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCCCCCHHHHHHHHhhhhhH
Confidence            997 33222 11     123457665  5799986  3677899999887776653222222334566665555555543


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHH---H-hCCCce----------eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHH
Q 011777          369 DKERRQAHCADVGSHLLGRLRTLQ---E-RHDIIG----------DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR  434 (477)
Q Consensus       369 ~~~~~~~~~~~~~~~l~~~L~~l~---~-~~~~~~----------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~  434 (477)
                      .  -..++..++...+.+.|.+..   . .||...          ...+.|.++.+++...      ......++.+.|+
T Consensus       246 ~--~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~------~~~~~~~~~~~l~  317 (377)
T TIGR01324       246 G--VRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRL------TQKQVHAFLDHLQ  317 (377)
T ss_pred             H--HHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCC------CHHHHHHHHHhCC
Confidence            2  123344444444444444311   0 111110          1235677888888421      1233456666665


Q ss_pred             HcCceeeccC---------------------CCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          435 ELGVLVGKGG---------------------LHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       435 ~~Gv~v~~~~---------------------~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      -.++.+.-|+                     ..++.|||+..+    ||.+.+++-|++++++
T Consensus       318 ~~~~~~slG~~~sl~~~~~~~~~~~~~~~~~~~~~liR~svGl----E~~~dl~~dl~~al~~  376 (377)
T TIGR01324       318 LFGLGYSWGGYESLALCNQPELGHRPNIKRNLEGPLIRVHIGL----ENVDDLKADLKAGFEA  376 (377)
T ss_pred             cceEeccCCCccceeecCCCCCCHHHHHhccCCCCEEEEEeCC----CCHHHHHHHHHHHHhc
Confidence            4333322111                     123578997665    4566667777777654

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.69  E-value=7.8e-15  Score=148.55  Aligned_cols=243  Identities=16%  Similarity=0.123  Sum_probs=152.2

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +...+|.++...+|+++|+++.+.  +....++||+.|+..++....  .++++|++..+.|.+.........       
T Consensus        57 ~~y~r~~~p~~~~Le~~lA~l~G~--~~~~~~~sG~~Ai~~~l~~~l--~~Gd~Vl~~~~~y~~~~~~~~~~~-------  125 (398)
T PRK07504         57 FIYSRYSNPTVDMFEKRMCALEGA--EDARATASGMAAVTAAILCQV--KAGDHVVAARALFGSCRYVVETLL-------  125 (398)
T ss_pred             ceeecCCCchHHHHHHHHHHHhCC--CeeeEecCHHHHHHHHHHHHh--CCCCEEEEcCCchhHHHHHHHHHH-------
Confidence            334567788899999999999865  455678899999988776432  356788888887776432211110       


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                        ...|+....++.     .  |    .++++++++    +++++|++|.++++.|.+.+    +++|.++|+++|+++|
T Consensus       126 --~~~G~~v~~vd~-----~--d----~e~l~~ai~----~~tklV~lesp~NptG~v~d----l~~I~~la~~~gi~lv  184 (398)
T PRK07504        126 --PRYGIESTLVDG-----L--D----LDNWEKAVR----PNTKVFFLESPTNPTLEVID----IAAVAKIANQAGAKLV  184 (398)
T ss_pred             --hhcCeEEEEECC-----C--C----HHHHHHhcC----cCceEEEEECCCCCCcEecC----HHHHHHHHHHcCCEEE
Confidence              011222222211     1  1    477777775    46789999988888887776    9999999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCccee--eecccccC-ccceE-EEEeCHHHHHh-hcccccccCCCCcHHHHHHHHHH
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-GLPLG-AVVTTPEIANV-MAQKIQFNTFGGNPVCSAGGLAV  364 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pig-~v~~~~~~~~~-~~~~~~~~t~~~~~~~~aaa~a~  364 (477)
                      +||+|+.+. .. ...   ..|  .|++  +++|.+++ |.++| +++++++.++. +...........+++.++.++..
T Consensus       185 vD~a~a~~~-~~-~~~---~~g--aDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~~~A~~~l~~  257 (398)
T PRK07504        185 VDNVFATPL-FQ-KPL---ELG--AHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPSLSPFNAWTLLKG  257 (398)
T ss_pred             EECCccccc-cC-Cch---hhC--CCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Confidence            999987321 11 111   123  4665  56799986 88886 66677765542 33211112234567777777777


Q ss_pred             HHhhchhhHHHHHHHHHHHHHHHHHHHHH----hCCCce----------eeeccceeEEEEEe
Q 011777          365 LRVIDKERRQAHCADVGSHLLGRLRTLQE----RHDIIG----------DVRGRGLMVGMELV  413 (477)
Q Consensus       365 l~~l~~~~~~~~~~~~~~~l~~~L~~l~~----~~~~~~----------~v~g~g~~~~i~~~  413 (477)
                      |+.+.  ...++..++..++.+.|.+...    .||...          ..+|.|.|+.|++.
T Consensus       258 L~tl~--~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~  318 (398)
T PRK07504        258 LETLP--VRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELK  318 (398)
T ss_pred             cchHH--HHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeC
Confidence            76653  2344455666666666654210    111111          12456889999884

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.68  E-value=1.1e-14  Score=146.86  Aligned_cols=314  Identities=17%  Similarity=0.046  Sum_probs=181.8

Q ss_pred             CHH-HHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCC-CCEEEEeC-ChHHHHHHHHHHHHhccCCceEEEEccC
Q 011777          114 HPD-VLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGN-LKVVYFVN-SGTEANELAMLMARLSTGNLGMIALRNA  190 (477)
Q Consensus       114 ~p~-v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~-~~~v~~~~-sGseA~~~Al~~ar~~~~~~~ii~~~~~  190 (477)
                      +|+ |++|+.+.+....|... .......+.++.|+++++.. ..+|+|+. |||++++.++....  .+++.+++. .+
T Consensus        24 ~~~~v~~a~~~~~~~~~hr~~-~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~--~~~~~~vi~-~g   99 (378)
T PRK03080         24 RPGWQLEALADALLGRSHRQK-PVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLL--GARRVDHLA-WE   99 (378)
T ss_pred             ChHHHHHHHHhhhcccCcCCH-HHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcC--CCCcceEEE-eC
Confidence            677 99998765432223322 12455778888999988753 34677775 99999999987542  222223333 45


Q ss_pred             ccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCC
Q 011777          191 YHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELA  270 (477)
Q Consensus       191 yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~  270 (477)
                      .||..........   +..    ..+..+..+  +....         ++++ ++     .++.|.+..+.+.+|.+.| 
T Consensus       100 ~f~~~~~~~~~~~---~g~----~~v~~~~~~--~g~~~---------d~~~-i~-----~~~~V~~~h~~t~tG~~~p-  154 (378)
T PRK03080        100 SFGSKWATDVVKQ---LKL----EDPRVLEAD--YGSLP---------DLSA-VD-----FDRDVVFTWNGTTTGVRVP-  154 (378)
T ss_pred             HHHHHHHHHHHhh---cCC----CCceEeccC--CCCCC---------CHhh-cC-----CCCCEEEEecCCccceecc-
Confidence            6665332211000   000    011111111  11111         1222 22     1234666667777888887 


Q ss_pred             chhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCHHHHHhhcccc--
Q 011777          271 PGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPEIANVMAQKI--  346 (477)
Q Consensus       271 ~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~~~~~~~~~~--  346 (477)
                         +++|.+  ++||+++|+|-+|+ +|.   ..+  +..+  .|++++|  |++++...+|+++.+++..+.+....  
T Consensus       155 ---i~~I~~--~~~g~~~vVDa~qs-~G~---~pi--dv~~--iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~~  221 (378)
T PRK03080        155 ---VARWIG--ADREGLTICDATSA-AFA---LPL--DWSK--LDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTPA  221 (378)
T ss_pred             ---chhhcc--ccCCCeEEEecccc-ccc---CCC--CHHH--CcEEEEehhhhCCCCCceEEEEECHHHHHhhhcccCC
Confidence               888888  78999999999998 432   222  3333  4888766  99987677999999999887654321  


Q ss_pred             --------------------cccCCCCc-HHHHHHHHHHHHhhchh-h---HHHHHHHHHHHHHHHHHHHHHhCCCce-e
Q 011777          347 --------------------QFNTFGGN-PVCSAGGLAVLRVIDKE-R---RQAHCADVGSHLLGRLRTLQERHDIIG-D  400 (477)
Q Consensus       347 --------------------~~~t~~~~-~~~~aaa~a~l~~l~~~-~---~~~~~~~~~~~l~~~L~~l~~~~~~~~-~  400 (477)
                                          ..+|++.+ ..+..+..++|+.+.+. .   ..++.+++.+++++.|+++.. ..... .
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~-~~~~~~~  300 (378)
T PRK03080        222 RPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPW-ATPLVAD  300 (378)
T ss_pred             CCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCC-cccccCC
Confidence                                12233333 33444446778877653 3   345555566666666654420 01111 1


Q ss_pred             eeccc-eeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          401 VRGRG-LMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--HGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       401 v~g~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ...++ .++.+.+..      ++.....++...++++|+++..++.  .++.+|+++...++++||+.+++.|++++++
T Consensus       301 ~~~~s~~i~~~~~~~------~~~~~~~~~~~~l~~~~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l~~al~~~~~~  373 (378)
T PRK03080        301 PATRSNTSVTLDFVD------AQAAVDAAAVAKLLRENGAVDIEPYRDAPNGLRIWCGPTVEPADVEALTPWLDWAFER  373 (378)
T ss_pred             ccccCccEEEEEcCC------chHHHHHHHHHHHHHcCCeeccccccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence            11122 344554311      0001123455667778888876532  2478999999999999999999999998764

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.68  E-value=3e-14  Score=130.85  Aligned_cols=305  Identities=14%  Similarity=0.110  Sum_probs=179.8

Q ss_pred             CChHHHHHHHHHHhhCCCCC--CEEEEeCChHHHHHHHHHHHHhc--cCC-ceEE-EEccCccCCcccccccccCCCCCC
Q 011777          136 LHHAIADFAEALASKMPGNL--KVVYFVNSGTEANELAMLMARLS--TGN-LGMI-ALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       136 ~~~~~~~l~~~La~~~~~~~--~~v~~~~sGseA~~~Al~~ar~~--~~~-~~ii-~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      ..+....|++.|.+.++++.  +++.+||+...|.-.+..+.--+  .|. ++|+ -..+-|-|+.+..+.-.....++.
T Consensus        76 ~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~fVs~kP  155 (417)
T COG3977          76 KAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDLFVSAKP  155 (417)
T ss_pred             hhHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccceeeccC
Confidence            34667788888888887664  58999999988887776654211  222 2333 367788888666544322111221


Q ss_pred             CCCCCCeeeec-CCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEE
Q 011777          210 PIPQGEIHHVV-NPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVC  288 (477)
Q Consensus       210 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill  288 (477)
                      .+.     .++ -...|+           -|++.+--   .+.+.+|++.-..+++|. +.+.+.+.+|.+++++||+.+
T Consensus       156 ~ie-----l~~~g~FKY~-----------vDF~~l~i---~e~~g~ic~SRPtNPTGN-VlTdeE~~kldalA~~~giPl  215 (417)
T COG3977         156 NIE-----LLPAGQFKYH-----------VDFEHLHI---GESTGAICVSRPTNPTGN-VLTDEELAKLDALARQHGIPL  215 (417)
T ss_pred             Ccc-----cccccceeec-----------cCHHHccc---ccccceEEecCCCCCCCC-cccHHHHHHHHHHhhhcCCcE
Confidence            111     110 000111           12222211   357888888877777775 458888999999999999999


Q ss_pred             EEcCcccCccCCCCCCccccccCC----Cccee---eecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHH
Q 011777          289 IADEVQTGFGRTGSHYWGFETQGV----IPDIV---TMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGG  361 (477)
Q Consensus       289 I~DEv~~gfgr~G~~~~~~~~~gv----~pDiv---t~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa  361 (477)
                      |+|.+|. .-+.|     +-..++    .++++   ++||.=-.|.|+|.+++++++++.+.......+.....++.|.+
T Consensus       216 iIDnAYg-~PFP~-----iifsd~~~~w~~NiilC~SLSK~GLPG~R~GIiIane~viqaitnmn~iisLap~~~G~Aia  289 (417)
T COG3977         216 IIDNAYG-VPFPG-----IIFSDATPLWNENIILCMSLSKLGLPGSRCGIIIANEKVIQAITNMNGIISLAPGRMGPAIA  289 (417)
T ss_pred             EEecccC-CCCCc-----eecccccccCCCCEEEEeehhhcCCCCcceeEEEccHHHHHHHHhccceeeecCCCccHHHH
Confidence            9999985 32222     111222    23333   45675446999999999999999887643222222223344444


Q ss_pred             HHHHHhhc-----hhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeE-EEEEeeCCCCCCccHHHHHHHHHHHHH
Q 011777          362 LAVLRVID-----KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMV-GMELVTDRKEKTPAKAETAVLFEKLRE  435 (477)
Q Consensus       362 ~a~l~~l~-----~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~l~~  435 (477)
                      ...++..+     ++-...-+++..+.....|++....++ ..-.+++|.++ |+-|.+-     |  .....++++|++
T Consensus       290 ~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~-~~iHkpEGAIFlWLWf~dL-----P--Itt~~LYq~LKa  361 (417)
T COG3977         290 AEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYR-CLIHKPEGAIFLWLWFKDL-----P--ITTEELYQRLKA  361 (417)
T ss_pred             HHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCccc-eeeecCCcceeehhhhccC-----C--CCHHHHHHHHHh
Confidence            44443211     111111122222333333333222222 22346677644 5555321     1  235789999999


Q ss_pred             cCceeeccCC-----------CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          436 LGVLVGKGGL-----------HGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       436 ~Gv~v~~~~~-----------~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +||++.||..           .+.|+|+  +++-++++|+..+.+|.+.+++
T Consensus       362 ~Gvl~VPG~~FFpGl~~ewpH~hqC~Rm--n~~~~~~~ie~Gva~lae~ve~  411 (417)
T COG3977         362 RGVLMVPGHYFFPGLDKEWPHTHQCMRM--NYVPEPEKIEKGVAILAEEVER  411 (417)
T ss_pred             CeEEEecccccCCCCCCCCCCccceEEE--ecCCCHHHHHHHHHHHHHHHHH
Confidence            9999999832           2368999  5888999999999999887764

>PRK05968 hypothetical protein; Provisional

Probab=99.68  E-value=1.2e-14  Score=146.87  Aligned_cols=289  Identities=15%  Similarity=0.078  Sum_probs=174.1

Q ss_pred             cccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCC
Q 011777          131 ATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYP  210 (477)
Q Consensus       131 ~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  210 (477)
                      ...++.++...+|+++++++.+.  +..++++||+.|+..++...  ..++++||+..+.|++..........       
T Consensus        56 ~Y~r~~~p~~~~le~~lA~l~g~--~~av~~~sG~~Ai~~al~al--~~~Gd~Vl~~~~~y~~t~~~~~~~~~-------  124 (389)
T PRK05968         56 IYSRGDNPTVRAFEEMLAKLEGA--EDARGFASGMAAISSTVLSF--VEPGDRIVAVRHVYPDAFRLFETILK-------  124 (389)
T ss_pred             cccCCCChhHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHHHH-------
Confidence            34456678889999999999865  35667799999999888643  23567899988888764321111000       


Q ss_pred             CCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEE
Q 011777          211 IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA  290 (477)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  290 (477)
                        ..|+....++.      . |    .+++++.+.     ++++|++|.+.|..+    +...+++|.++|++||+++|+
T Consensus       125 --~~G~~v~~vd~------~-d----~~~l~~~i~-----~tklV~ie~pt~~~~----~~~dl~~i~~la~~~gi~viv  182 (389)
T PRK05968        125 --RMGVEVDYVDG------R-D----EEAVAKALP-----GAKLLYLESPTSWVF----ELQDVAALAALAKRHGVVTMI  182 (389)
T ss_pred             --HcCceEEEeCC------C-C----HHHHHHhcc-----cCCEEEEECCCCCCC----cHHHHHHHHHHHHHcCCEEEE
Confidence              01222221110      0 1    366776653     456788886655544    334599999999999999999


Q ss_pred             cCcccCccCCCCCCccccccCCCccee--eecccccC-c-cceEEEEeCHHHHHhhccccc-ccCCCCcHHHHHHHHHHH
Q 011777          291 DEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-G-LPLGAVVTTPEIANVMAQKIQ-FNTFGGNPVCSAGGLAVL  365 (477)
Q Consensus       291 DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pig~v~~~~~~~~~~~~~~~-~~t~~~~~~~~aaa~a~l  365 (477)
                      |+++..+.. . ..  .. .|.  |++  +++|.+++ | ...|++++++++++.+..... ......+++.++.++..|
T Consensus       183 D~a~a~~~~-~-~p--~~-~g~--Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L  255 (389)
T PRK05968        183 DNSWASPVF-Q-RP--IT-LGV--DLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSPFEAWLLLRGL  255 (389)
T ss_pred             ECCCcchhc-c-Cc--hh-cCC--cEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCCCCCChHHHHHHHccc
Confidence            999863321 1 11  11 243  555  57799996 4 677888999988877654211 111334577777766666


Q ss_pred             HhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeee-------------ccceeEEEEEeeCCCCCCccHHHHHHHHHH
Q 011777          366 RVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR-------------GRGLMVGMELVTDRKEKTPAKAETAVLFEK  432 (477)
Q Consensus       366 ~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~-------------g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~  432 (477)
                      +.+  +...++-.++.+++.+.|++    ++.+..+.             +.|.++.+++..        .....++.+.
T Consensus       256 ~tl--~~r~~~~~~~a~~la~~L~~----~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~--------~~~~~~f~~~  321 (389)
T PRK05968        256 RTL--PLRMKAHEASALEIARRLKA----HPVVERVCHPALANHPPAGLSGTSGLFSFIFRE--------GIDVRAFADA  321 (389)
T ss_pred             CcH--HHHHHHHHHHHHHHHHHHHh----CCCccEEECCCCCCChHHhCCCCceEEEEEECC--------HHHHHHHHHh
Confidence            644  23344444455555555543    44333222             456677777731        2235677777


Q ss_pred             HHHcCceeeccC-------------------------CCCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          433 LRELGVLVGKGG-------------------------LHGNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       433 l~~~Gv~v~~~~-------------------------~~~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      |...++.+.-|+                         ...+.+|++..+..+++-++.+-++|+++
T Consensus       322 L~~~~~~~s~G~~~slv~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGlE~~~dl~~dl~~al~~~  387 (389)
T PRK05968        322 LKLFRLGVSWGGHESLVVPAEVVLQQKAQPNSAARFGVSPRSVRLHVGLEGTEALWADLEQALAAA  387 (389)
T ss_pred             CCccEEecCCCCCCceeeeCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHHh
Confidence            766554332221                         11468999988876655555555555543

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.67  E-value=2.8e-14  Score=142.54  Aligned_cols=236  Identities=18%  Similarity=0.156  Sum_probs=151.8

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +.++++.++...+|+++|+++.+  .+.++.++||++|+.+++.+.   .++++||+....|++........ .      
T Consensus        46 ~~Y~R~~~p~~~~le~~lA~leg--~~~~v~~~sG~aAi~~~l~~l---~~GD~VI~~~~~yg~~~~~~~~~-~------  113 (364)
T PRK07269         46 FDYTRTKNPTRAKLEETLAAIES--ADYALATSSGMSAIVLAFSVF---PVGSKVVAVRDLYGGSFRWFNQQ-E------  113 (364)
T ss_pred             cceeCCCCccHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHh---CCCCEEEEecCCcCchHHHHHHH-H------
Confidence            33456788889999999999984  468999999999999988532   35678998888876543211110 0      


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                        +..++...         +..|    .+++++.++    +++++|++|..+++.|.+..    +++|.++|+++|+++|
T Consensus       114 --~~~~~~~~---------~~~d----~~~l~~~i~----~~TklV~lesP~NPtg~~~d----i~~I~~la~~~gi~vv  170 (364)
T PRK07269        114 --KEGRFHFT---------YANT----EEELIAAIE----EDTDIVYIETPTNPLMVEFD----IEKVAKLAHAKGAKVI  170 (364)
T ss_pred             --hcCcEEEE---------ecCC----HHHHHHhcC----cCceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEE
Confidence              00111111         1111    367877775    46788888888887787665    9999999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCcceee--ecccccC-c-cceEEEEe-CHHHHHhhcccccccCCCCcHHHHHHHHHH
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGN-G-LPLGAVVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAV  364 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~  364 (477)
                      +||++..    +  .+ ....+...|+++  ++|.++| | .-.|++++ ++++.+.+...........+|+.++.++..
T Consensus       171 vD~t~~~----~--~~-~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~  243 (364)
T PRK07269        171 VDNTFYS----P--IY-QRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRG  243 (364)
T ss_pred             EECCCcc----c--cc-CCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcC
Confidence            9999641    1  11 122344567775  5699986 3 33477777 466776665322122234578877777776


Q ss_pred             HHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee--eccceeEEEEEe
Q 011777          365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV--RGRGLMVGMELV  413 (477)
Q Consensus       365 l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v--~g~g~~~~i~~~  413 (477)
                      |+.+  +...++..++..++.+.|    +.+|.+..+  ++.|.++.+++.
T Consensus       244 L~tL--~~r~~~~~~na~~~a~~L----~~~p~v~~v~ypg~gg~~sf~~~  288 (364)
T PRK07269        244 LKTL--SLRMERSTANAQEVVAFL----KKSPAVKEVLYTGKGGMISFKVA  288 (364)
T ss_pred             CCcH--HHHHHHHHHHHHHHHHHH----HhCCCccEEeCCCcCcEEEEEEC
Confidence            6643  233444455555555544    446644333  577888888873

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.67  E-value=7.7e-14  Score=141.34  Aligned_cols=217  Identities=13%  Similarity=0.119  Sum_probs=137.0

Q ss_pred             HHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccC-CCcc
Q 011777          237 AQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQG-VIPD  315 (477)
Q Consensus       237 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~g-v~pD  315 (477)
                      .+++++++.    ..+..|++....+.++ ..+    +++|+++|++||+++++|++|+ +|..|...+.-+... -..|
T Consensus       209 ~d~l~~~~~----~~~plvii~g~S~~~~-~~d----l~~i~eia~~~gA~L~VD~AH~-~Gligg~~~~~~~~~~~~~D  278 (493)
T PRK13580        209 YDEIAALAR----EFKPLILVAGYSAYPR-RVN----FAKLREIADEVGAVLMVDMAHF-AGLVAGKVFTGDEDPVPHAD  278 (493)
T ss_pred             HHHHHHHHh----hcCCEEEEeCccccCC-CcC----HHHHHHHHHHcCCEEEEECchh-hceeccccchhhcCCCCCCc
Confidence            477888776    2334444445444444 455    8999999999999999999997 544331121101101 1356


Q ss_pred             ee--eecccccCccceEEEEeCHHHHHhhcccccccCCCCc-HHHHHHHHHHHHhhchh---hHHHHHHHHHHHHHHHHH
Q 011777          316 IV--TMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGN-PVCSAGGLAVLRVIDKE---RRQAHCADVGSHLLGRLR  389 (477)
Q Consensus       316 iv--t~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~-~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~  389 (477)
                      ++  |++|++.|. +.|++++++++.+.+.... ...|+++ +..++|+..++..+.++   ++.+++.++.++|++.|.
T Consensus       279 ~vtgT~hKaL~GP-~GG~I~~~~~l~~~L~~a~-P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~  356 (493)
T PRK13580        279 IVTTTTHKTLRGP-RGGLVLAKKEYADAVDKGC-PLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFL  356 (493)
T ss_pred             EEEeCChhhccCC-CeEEEEecHHHHHHHhhCC-CcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence            66  567999542 2389999999988874322 2333332 33444444456555432   367888899999999887


Q ss_pred             HHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeecc----CC----CCCEEEEeCCC----C
Q 011777          390 TLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG----GL----HGNVFRIKPPM----C  457 (477)
Q Consensus       390 ~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~~----~~~~iRi~p~~----~  457 (477)
                      +.  .+.++.. .....++.+++.+.       ......+.+.|.+.||++.+.    ..    ....|||+++.    .
T Consensus       357 ~~--G~~vv~g-gTdshIV~V~lg~~-------~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg  426 (493)
T PRK13580        357 KR--GARLVTG-GTDNHLVLIDVTSF-------GLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLG  426 (493)
T ss_pred             hc--CCCccCC-CCCCCEEEEEeCCH-------HHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcC
Confidence            75  2332211 12356677776321       112346677999999998643    11    14679999888    5


Q ss_pred             CcHHHHHHHHHHHHHHHh
Q 011777          458 FTKDDADFLVDALDYSMS  475 (477)
Q Consensus       458 ~t~e~i~~~l~~l~~~l~  475 (477)
                      ++++|++++++.|.++++
T Consensus       427 ~teedi~~iad~l~~~l~  444 (493)
T PRK13580        427 MGSDEMDEVAELIVKVLS  444 (493)
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            579999999999998875

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=4.7e-15  Score=140.82  Aligned_cols=350  Identities=14%  Similarity=0.089  Sum_probs=216.6

Q ss_pred             EEeeeccEEEeCCCCEEEeecCCcccccCCC-CCHHHHHHHHHHHhhcccccc-----ccCChHHHHHHHHHHhhCCCCC
Q 011777           82 IVEGKMQYLFDENGRRYLDAFAGIVTVSCGH-CHPDVLNAIFEQSKLLQHATT-----IYLHHAIADFAEALASKMPGNL  155 (477)
Q Consensus        82 ~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~Av~~~l~~~~~~~~-----~~~~~~~~~l~~~La~~~~~~~  155 (477)
                      +...-+..+ ..||+.+++|.+...   ||. .++++.+.+...++++..+..     .+.-....++.++|+++++.. 
T Consensus        81 ~e~~~~~~~-~i~G~~~~N~aS~Nf---L~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G~E-  155 (467)
T KOG1358|consen   81 LESVMLPHV-TIDGKDVLNFASANF---LGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMGTE-  155 (467)
T ss_pred             cccccCCce-EecCceeecccchhh---hhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhCCc-
Confidence            333333443 589999999987654   443 478999999999998643221     233566789999999999652 


Q ss_pred             CEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHH
Q 011777          156 KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAAR  235 (477)
Q Consensus       156 ~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (477)
                      +.+ +-+-|-.+++.++.   ++.++.+|+..+-.-+-...-.+.++......                    |..++  
T Consensus       156 ~ai-vYs~gF~ti~S~ip---afsKrGDIi~~de~~nfaIq~GlqlSRS~i~~--------------------Fkhnd--  209 (467)
T KOG1358|consen  156 DAI-VYSYGFSTIESAIP---AFSKRGDIIFVDEAVNFAIQKGLQLSRSTISY--------------------FKHND--  209 (467)
T ss_pred             cee-eeccccchhhhcch---hhhccCcEEEEehhhhHHHHHHHhhhhheeEE--------------------ecCCC--
Confidence            344 44455566666666   56678888876655443333323222211111                    11111  


Q ss_pred             HHHHHHHHHhcc------CCC---CeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCcc---CCCCC
Q 011777          236 YAQDLQDHIDFG------TSG---KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG---RTGSH  303 (477)
Q Consensus       236 ~~~~le~~i~~~------~~~---~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfg---r~G~~  303 (477)
                       ++++|.++...      ++.   ....+++|.+.-+.|.+.|    |++|.++..||..-+|.||.++ ||   ++| +
T Consensus       210 -m~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~p----l~~iv~lk~Kyk~RvildEs~S-fG~lg~~G-r  282 (467)
T KOG1358|consen  210 -MEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICP----LPEIVKLKNKYKFRVILDESLS-FGVLGKTG-R  282 (467)
T ss_pred             -HHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccc----cHHHHHHHhhheEEEEEecccc-cccccccC-c
Confidence             35555544311      111   2468899999999999998    9999999999999999999987 54   555 2


Q ss_pred             CccccccCCC---cceeee--cccccC-ccceEEEEeCHHHHHhhcccccccCCC--CcHHHHHHHHHHHHhhch-hhHH
Q 011777          304 YWGFETQGVI---PDIVTM--AKGIGN-GLPLGAVVTTPEIANVMAQKIQFNTFG--GNPVCSAGGLAVLRVIDK-ERRQ  374 (477)
Q Consensus       304 ~~~~~~~gv~---pDivt~--sK~lg~-G~pig~v~~~~~~~~~~~~~~~~~t~~--~~~~~~aaa~a~l~~l~~-~~~~  374 (477)
                       .-.+|+++.   .|+++.  +-+++. |   |+++++.-+.+.-+-...+..|+  .+|....||..++++++. .+..
T Consensus       283 -GvteH~~v~~~~iDiv~~sm~~alas~G---gFc~G~~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~~~~p~~~  358 (467)
T KOG1358|consen  283 -GVTEHFGVPITDIDIVTASMETALASGG---GFCAGKSFIADHQRLSGSGYCFSASLPPYLAGAAIKAILIEEWNPEIV  358 (467)
T ss_pred             -cccccCCCCccceeeeeecccccccccC---ceeecceeeEeeeeccccceeeeccCchhhhhhHHHHHHHHhhCcchh
Confidence             234788775   466654  456663 4   66666544433222122333443  457888888888888765 3455


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC--------CC
Q 011777          375 AHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG--------LH  446 (477)
Q Consensus       375 ~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------~~  446 (477)
                      +.++.....+...|+..   ......-...+.++.+.+.....+.+-.....+++++.+..+|+++....        .-
T Consensus       359 ~~L~~k~~~~H~~l~~~---s~~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~~~ll~~a~~~~~~e~~~~  435 (467)
T KOG1358|consen  359 QPLRAKVAKFHAALSSN---SGFIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAEGVLLTRAKYLEKLERCPI  435 (467)
T ss_pred             hhhhccccccchhhhcC---CceEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhhcceehhhhhhhhcccCCC
Confidence            55666555555555441   11222222334555555544333333333445778888877788875431        11


Q ss_pred             CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          447 GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       447 ~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .-.||++.+..+++||++++.+.++++...
T Consensus       436 ~pSiri~~~a~~seeel~ra~~~ik~~~~~  465 (467)
T KOG1358|consen  436 PPSIRICVSAGMSEEELERAAELIKEVASA  465 (467)
T ss_pred             CCcEEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence            246999999999999999999999987654

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.66  E-value=5e-14  Score=142.93  Aligned_cols=220  Identities=16%  Similarity=0.090  Sum_probs=142.0

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +...++.++...+|++.|+++.+.  +..+.++||+.|+.++++..  ..++++||+..+.| +.+.......       
T Consensus        57 ~~y~r~~~p~~~~le~~lA~l~g~--~~~i~~~sG~~Al~~~l~~l--l~~Gd~Viv~~~~y-~~t~~~~~~~-------  124 (403)
T PRK07503         57 HFYSRISNPTLALLEQRMASLEGG--EAAVALASGMGAITATLWTL--LRPGDEVIVDQTLY-GCTFAFLHHG-------  124 (403)
T ss_pred             ceeeCCCCchHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHHH--cCCCCEEEEccCcc-chHHHHHHHH-------
Confidence            334567788899999999999865  44678889999999998754  34567788877666 3322211100       


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                       ....|+....++.      . |    .+++++.++    +++++|++|.++++.|.+.+    +++|.++|++||+++|
T Consensus       125 -~~~~G~~v~~vd~------~-d----~~~l~~~i~----~~tklV~le~p~NPtG~~~d----i~~I~~la~~~gi~lI  184 (403)
T PRK07503        125 -LGEFGVTVRHVDL------T-D----PAALKAAIS----DKTRMVYFETPANPNMRLVD----IAAVAEIAHGAGAKVV  184 (403)
T ss_pred             -HhhCCEEEEEeCC------C-C----HHHHHHhcC----ccCcEEEEeCCCCCCCeeeC----HHHHHHHHHHcCCEEE
Confidence             0011333222211      0 1    467877775    36788888888888887776    8999999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCccee--eecccccC-c-cceEEEEeCHHHHHhhccc--ccccCCCCcHHHHHHHHH
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-G-LPLGAVVTTPEIANVMAQK--IQFNTFGGNPVCSAGGLA  363 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pig~v~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~a  363 (477)
                      +|++|... ..+ ...     +...|++  +++|.+++ | .+.|+++.++++.+.++..  ........+++.++.++.
T Consensus       185 vD~a~a~~-~~~-~~l-----~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~  257 (403)
T PRK07503        185 VDNTYCTP-YLQ-RPL-----ELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMR  257 (403)
T ss_pred             EECCCccc-ccC-Cch-----hhCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCCCCHHHHHHHHc
Confidence            99999732 222 221     2234655  57899996 5 7889999999988877532  222234567777777766


Q ss_pred             HHHhhchhhHHHHHHHHHHHHHHHHHH
Q 011777          364 VLRVIDKERRQAHCADVGSHLLGRLRT  390 (477)
Q Consensus       364 ~l~~l~~~~~~~~~~~~~~~l~~~L~~  390 (477)
                      .|+.+.  ...++..++...+.+.|.+
T Consensus       258 ~L~tl~--~r~~~~~~na~~~a~~L~~  282 (403)
T PRK07503        258 GLKTLA--LRMDRHCASAQAVAEWLAR  282 (403)
T ss_pred             CcchHH--HHHHHHHHHHHHHHHHHHh
Confidence            665442  2233334455555555543

>PRK02769 histidine decarboxylase; Provisional

Probab=99.66  E-value=1.2e-13  Score=138.52  Aligned_cols=287  Identities=19%  Similarity=0.206  Sum_probs=179.0

Q ss_pred             hHHHHHHHHHHhhCCCCCCE--EEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCC
Q 011777          138 HAIADFAEALASKMPGNLKV--VYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGE  215 (477)
Q Consensus       138 ~~~~~l~~~La~~~~~~~~~--v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~  215 (477)
                      ....+..++++++++.+.+.  .+||+||||||..|+..+|...+++.|++ ...-|.....+....+..          
T Consensus        65 ~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~-s~~~H~Sv~ka~~~lg~~----------  133 (380)
T PRK02769         65 DFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYY-SKDTHYSVSKIARLLRIK----------  133 (380)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEe-CCCceehHHHHHHHcCCC----------
Confidence            44567888888888754333  58999999999999998887544444444 444554433322222211          


Q ss_pred             eeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhC---cEEEEcC
Q 011777          216 IHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAG---GVCIADE  292 (477)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g---illI~DE  292 (477)
                      ...++...  .+..+      .++|+++++.. ..++.+|++.-.+++.|.+.|    +++|.++|++||   +++++|.
T Consensus       134 ~~~V~~~~--~g~id------~~~L~~~i~~~-~~~t~lvv~t~gtt~tG~idp----i~~I~~i~~~~g~~~~~lHVDa  200 (380)
T PRK02769        134 SRVITSLP--NGEID------YDDLISKIKEN-KNQPPIIFANIGTTMTGAIDN----IKEIQEILKKIGIDDYYIHADA  200 (380)
T ss_pred             CceeccCC--CCcCc------HHHHHHHHHhC-CCCcEEEEEEeCCCCCcccCC----HHHHHHHHHHhCCCceEEEEEe
Confidence            11122111  11122      57888888733 335788888888899998888    999999999998   6999999


Q ss_pred             cccCccCC---CCCCccccccCCCcceeeec--ccccCccceEEEEeCHHHHHhhcccc-----cccCCC--CcHHHHHH
Q 011777          293 VQTGFGRT---GSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPEIANVMAQKI-----QFNTFG--GNPVCSAG  360 (477)
Q Consensus       293 v~~gfgr~---G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~~~~~~~~~~-----~~~t~~--~~~~~~aa  360 (477)
                      +|.|+-..   ....+  +... ..|.+++|  |.+++..+.|+++.+++..+.+....     ...|+.  -|....++
T Consensus       201 A~gg~~~p~~~~~~~~--d~~~-~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~  277 (380)
T PRK02769        201 ALSGMILPFVNNPPPF--SFAD-GIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALL  277 (380)
T ss_pred             cccceeecccCccccC--CccC-CCCEEEECCcccCCCCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHH
Confidence            99875210   00012  2112 56888876  87776789999999988766553210     111222  34456667


Q ss_pred             HHHHHHhhchh---hHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcC
Q 011777          361 GLAVLRVIDKE---RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELG  437 (477)
Q Consensus       361 a~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~G  437 (477)
                      ..++|+.+..+   +..++..++.+++.++|++.    +...-..+....+.  |..      |.    ..+.     +|
T Consensus       278 lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~----g~~~~~~p~~~~v~--f~~------~~----~~~~-----~~  336 (380)
T PRK02769        278 LWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQAN----GIPAWRNPNSITVV--FPC------PS----ERIW-----KK  336 (380)
T ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC----CCEEEcCCCceEEE--EcC------CC----HHHH-----hC
Confidence            77788777654   44566777777888877653    22212222333333  321      21    1121     56


Q ss_pred             ceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          438 VLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       438 v~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      ..+.+.   ++.+|+.....++++.||++++-|...+.
T Consensus       337 w~l~~~---~~~~hi~~~~~~~~~~~~~f~~dl~~~~~  371 (380)
T PRK02769        337 WHLATS---GNQAHIITMPHHNKQQIDSLIDELIFDLK  371 (380)
T ss_pred             eeEccc---CCEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence            655543   35788887788899999999999987654

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.66  E-value=6e-14  Score=142.14  Aligned_cols=238  Identities=20%  Similarity=0.160  Sum_probs=152.8

Q ss_pred             cccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCC
Q 011777          131 ATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYP  210 (477)
Q Consensus       131 ~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  210 (477)
                      ...++.++...+|+++|+++.+.  +..++++||++|+..++....  .+++.|++..+.|++..........       
T Consensus        53 ~y~R~~~p~~~~Le~~lA~l~g~--~~~v~~~sG~~Ai~~~l~all--~pGD~Vvv~~p~Y~~t~~~~~~~~~-------  121 (405)
T PRK08776         53 DYTRSGNPTRDLLGEALAELEGG--AGGVITATGMGAINLVLNALL--QPGDTLVVPHDAYGGSWRLFNALAK-------  121 (405)
T ss_pred             cccCCCChHHHHHHHHHHHHhCC--CceEEEcCHHHHHHHHHHHHh--CCCCEEEEccCCchHHHHHHHHHHH-------
Confidence            34567788889999999998765  345678889999998887553  3567899888898763221111100       


Q ss_pred             CCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEE
Q 011777          211 IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA  290 (477)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  290 (477)
                        ..++..+..+.      . |    .+++++.++    +++++|+++..+|++|.+..    +++|.++|++||+++|+
T Consensus       122 --~~g~~v~~v~~------~-d----~~~l~~~i~----~~tklV~l~~P~NPtG~v~d----l~~I~~la~~~gi~vIv  180 (405)
T PRK08776        122 --KGHFALITADL------T-D----PRSLADALA----QSPKLVLIETPSNPLLRITD----LRFVIEAAHKVGALTVV  180 (405)
T ss_pred             --hcCcEEEEECC------C-C----HHHHHHhcC----cCCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEE
Confidence              01222222211      0 1    367777765    35677888877778887654    89999999999999999


Q ss_pred             cCcccCccCCCCCCccccccCCCccee--eecccccC--ccceEEEEe-CHHHHHhhcccccccCCCCcHHHHHHHHHHH
Q 011777          291 DEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN--GLPLGAVVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAVL  365 (477)
Q Consensus       291 DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~--G~pig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l  365 (477)
                      ||+|..-..    ...++ +  ..|++  +.+|.++|  ++..|++++ ++++.+.+........++.+++.+.+.+..+
T Consensus       181 D~a~a~~~~----~~pl~-~--gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl  253 (405)
T PRK08776        181 DNTFLSPAL----QKPLE-F--GADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGL  253 (405)
T ss_pred             ECCCccccc----CCccc-c--cCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh
Confidence            999873211    11112 2  34666  46699985  367788877 4677776654333334456888888887777


Q ss_pred             HhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCce------------------eeeccceeEEEEEe
Q 011777          366 RVIDKERRQAHCADVGSHLLGRLRTLQERHDIIG------------------DVRGRGLMVGMELV  413 (477)
Q Consensus       366 ~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~------------------~v~g~g~~~~i~~~  413 (477)
                      +.+  +...++..++...+.+.|++    +|.+.                  ...|.|.|+.+++.
T Consensus       254 ~tl--~~r~~~~~~na~~la~~L~~----~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~  313 (405)
T PRK08776        254 RTL--DARLRVHQENADAIAALLDG----HAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELE  313 (405)
T ss_pred             CcH--HHHHHHHHHHHHHHHHHHHc----CCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEc
Confidence            654  33455666666666665553    33221                  12467888899884

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.66  E-value=4.4e-14  Score=141.98  Aligned_cols=239  Identities=18%  Similarity=0.100  Sum_probs=150.1

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +.++++.++...+|+++|+++.+  .+.+++++||++|+..++....  .+++.|++..+.|.+.........       
T Consensus        45 ~~Y~R~~npt~~~Le~~lA~leg--~e~ivvt~gg~~Ai~~~l~all--~~Gd~Il~~~~~y~~~~~~~~~~~-------  113 (388)
T PRK08861         45 YDYTRSGNPNRGLLEQTLSELES--GKGAVVTNCGTSALNLWVSALL--GPDDLIVAPHDCYGGTYRLFNTRA-------  113 (388)
T ss_pred             ccccCCCCchHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHHc--CCCCEEEEcCCchHHHHHHHHHHH-------
Confidence            34557788999999999999985  4789999999999999997653  366788888888865322111110       


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                        ...++....++.     .  |    .++++++++    +++++|++|.++|++|.+.+    +++|.++|+++|+++|
T Consensus       114 --~~~gi~v~~vd~-----~--d----~e~l~~~i~----~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~vI  172 (388)
T PRK08861        114 --NKGDFKVQFVDQ-----S--D----AAALDAALA----KKPKLILLETPSNPLVRVVD----IAELCQKAKAVGALVA  172 (388)
T ss_pred             --hcCCeEEEEECC-----C--C----HHHHHHhcC----cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEE
Confidence              001233222211     0  1    467777765    36788888887888887776    8999999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCcceee--ecccccC--ccceEEEEeC-HHHHHhhcccccccCCCCcHHHHHHHHHH
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGN--GLPLGAVVTT-PEIANVMAQKIQFNTFGGNPVCSAGGLAV  364 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~--G~pig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~  364 (477)
                      +||+|..... . ..     .....|+++  ++|.++|  +...|+++++ +++.+.+...........+|+.+...+..
T Consensus       173 vDea~~~~~~-~-~p-----l~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rg  245 (388)
T PRK08861        173 VDNTFLTPVL-Q-KP-----LELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRG  245 (388)
T ss_pred             EECCcccccc-C-CC-----cccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhc
Confidence            9999863210 1 11     123356664  6699986  3667888775 55666554322222334467766655555


Q ss_pred             HHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCce------------------eeeccceeEEEEEe
Q 011777          365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIG------------------DVRGRGLMVGMELV  413 (477)
Q Consensus       365 l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~------------------~v~g~g~~~~i~~~  413 (477)
                      |+.+.  -..++..++...+.+.|++    +|.+.                  ...|.|.++.+++.
T Consensus       246 l~Tl~--lR~~~~~~~a~~~a~~L~~----~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~  306 (388)
T PRK08861        246 IRTLG--ARMRVHEESAQQILAYLQT----QSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFA  306 (388)
T ss_pred             CCCHH--HHHHHHHHHHHHHHHHHHh----CCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeC
Confidence            54332  1234444444455454443    33221                  12467888888884

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.65  E-value=6.4e-15  Score=150.21  Aligned_cols=166  Identities=19%  Similarity=0.165  Sum_probs=118.1

Q ss_pred             ccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCC
Q 011777          132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI  211 (477)
Q Consensus       132 ~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  211 (477)
                      .+++.++...+|+++|+++.+.  +.+++++||++|+..+++....  ++++||+..+.|+|..........        
T Consensus        51 ysr~~~p~~~~le~~lA~l~g~--~~~v~~~sG~~Ai~~al~~l~~--~Gd~Vl~~~~~y~~t~~~~~~~~~--------  118 (418)
T TIGR01326        51 YSRLMNPTTDVLEQRIAALEGG--VAALAVASGQAAITYAILNLAQ--AGDNIVSSSYLYGGTYNLFKHTLK--------  118 (418)
T ss_pred             eECCCChhHHHHHHHHHHHhCC--CeEEEEccHHHHHHHHHHHHhC--CCCEEEEECCCcHHHHHHHHHHHH--------
Confidence            4567788899999999999864  6789999999999999986543  567899988888764322111000        


Q ss_pred             CCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777          212 PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD  291 (477)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  291 (477)
                       ..|+....++.      + |    .++++++++    +++++|++|.++|++|.+.+    +++|.++|++||+++|+|
T Consensus       119 -~~G~~v~~v~~------~-d----~~~l~~~l~----~~t~~V~le~p~NPtg~v~d----l~~I~~la~~~~i~livD  178 (418)
T TIGR01326       119 -RLGIEVRFVDP------D-D----PEEFEKAID----ENTKAVFAETIGNPAINVPD----IEAIAEVAHAHGVPLIVD  178 (418)
T ss_pred             -HcCcEEEEECC------C-C----HHHHHHhcC----cCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEE
Confidence             01222222221      0 1    477887775    46788999988888887776    899999999999999999


Q ss_pred             CcccCccCCCCCCccccccCCCccee--eecccccC-ccceEEEEeCH
Q 011777          292 EVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-GLPLGAVVTTP  336 (477)
Q Consensus       292 Ev~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pig~v~~~~  336 (477)
                      |+|.. +...      ......+|++  +++|.+++ |+++|++++++
T Consensus       179 ~t~~~-~~~~------~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~~  219 (418)
T TIGR01326       179 NTFAT-PYLC------RPIDHGADIVVHSATKYIGGHGTAIGGVIVDG  219 (418)
T ss_pred             CCCch-hhcC------CchhcCCeEEEECccccccCCccceEEEEEec
Confidence            99862 2111      1122345766  68899997 89999998864

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.65  E-value=8.4e-14  Score=140.64  Aligned_cols=288  Identities=16%  Similarity=0.113  Sum_probs=171.3

Q ss_pred             ccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCC
Q 011777          132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI  211 (477)
Q Consensus       132 ~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  211 (477)
                      ...+.++...+|+++|+++.+..  ..+.++||++|+.++++...  .++++||+..+.|.+.........         
T Consensus        55 Y~r~~~p~~~~Le~~lA~~~g~~--~~i~~~sG~~Ai~~~l~all--~~Gd~Vl~~~~~y~~t~~~~~~~~---------  121 (388)
T PRK07811         55 YARTGNPTRTALEEQLAALEGGA--YGRAFSSGMAATDCLLRAVL--RPGDHIVIPNDAYGGTFRLIDKVF---------  121 (388)
T ss_pred             ccCCCCccHHHHHHHHHHHhCCC--ceEEeCCHHHHHHHHHHHHh--CCCCEEEEcCCCchHHHHHHHHhC---------
Confidence            34566788899999999998653  45666889999999998663  356789998888865422211110         


Q ss_pred             CCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777          212 PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD  291 (477)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  291 (477)
                      ...++.....+.      . |    .+++++.++    +++++|++|..+++.|.+.+    +++|.++|++||+++|+|
T Consensus       122 ~~~gi~~~~~d~------~-d----~e~l~~~i~----~~tklV~ie~p~NPtg~~~d----l~~I~~la~~~gi~lIvD  182 (388)
T PRK07811        122 TRWGVEYTPVDL------S-D----LDAVRAAIT----PRTKLIWVETPTNPLLSITD----IAALAELAHDAGAKVVVD  182 (388)
T ss_pred             cCCCeEEEEeCC------C-C----HHHHHHhcC----cCCeEEEEECCCCCcceecC----HHHHHHHHHHcCCEEEEE
Confidence            001222221111      0 1    477777775    36788988887777786665    999999999999999999


Q ss_pred             CcccCccCCCCCCccccccCCCccee--eecccccC-c-cceEEEEeC-HHHHHhhcccccccCCCCcHHHHHHHHHHHH
Q 011777          292 EVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-G-LPLGAVVTT-PEIANVMAQKIQFNTFGGNPVCSAGGLAVLR  366 (477)
Q Consensus       292 Ev~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~  366 (477)
                      |+|... ..+ ...     +...|++  +++|.+++ | ...|+++++ +++.+.+...........++..+..++..|+
T Consensus       183 ~a~a~~-~~~-~p~-----~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~  255 (388)
T PRK07811        183 NTFASP-YLQ-QPL-----ALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLK  255 (388)
T ss_pred             CCCCcc-ccC-Cch-----hhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccC
Confidence            998632 212 111     2234655  56799996 3 567888875 6666655433222223345666555555554


Q ss_pred             hhchhhHHHHHHHHHHHHHHHHHHHHHhCCCce------------------eeeccceeEEEEEeeCCCCCCccHHHHHH
Q 011777          367 VIDKERRQAHCADVGSHLLGRLRTLQERHDIIG------------------DVRGRGLMVGMELVTDRKEKTPAKAETAV  428 (477)
Q Consensus       367 ~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~------------------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~  428 (477)
                      .+  +...++..++...+.+.|++    ++.+.                  ...|.|.++.+++..+       ...+.+
T Consensus       256 tl--~~R~~~~~~na~~la~~L~~----~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~-------~~~~~~  322 (388)
T PRK07811        256 TL--AVRMDRHSENAEAVAEFLAG----HPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGG-------EEAARD  322 (388)
T ss_pred             cH--HHHHHHHHHHHHHHHHHHHh----CCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCCC-------HHHHHH
Confidence            32  23344555566666666554    33221                  1235688889988421       122344


Q ss_pred             HHHHHHH--cCc--------eeecc------------CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          429 LFEKLRE--LGV--------LVGKG------------GLHGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       429 ~~~~l~~--~Gv--------~v~~~------------~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      +.+.|.=  .|.        +..|.            |..++.|||+..+.    |.+.+++-|++++.
T Consensus       323 f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~  387 (388)
T PRK07811        323 FCARTKVFTLAESLGGVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIE----DVADLLADLEQALG  387 (388)
T ss_pred             HHHhCCcceeeccCCCCcceEeCCcccCcccCCHhhcCCCCCEEEEEeCCC----CHHHHHHHHHHHhh
Confidence            5554431  111        11110            11246899987664    55566666666654

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.65  E-value=4.8e-14  Score=142.09  Aligned_cols=217  Identities=16%  Similarity=0.075  Sum_probs=139.1

Q ss_pred             ccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCC
Q 011777          132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI  211 (477)
Q Consensus       132 ~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  211 (477)
                      +.++.++...+|+++++++.+.  +.+++++||++|+..++....  .+++.|++..+.|++.........         
T Consensus        47 y~r~~np~~~~lE~~lA~l~g~--~~~l~~~sG~~Ai~~~l~~ll--~~GD~Vlv~~~~y~~~~~~~~~~~---------  113 (385)
T PRK08574         47 YSREENPTLRPLEEALAKLEGG--VDALAFNSGMAAISTLFFSLL--KAGDRVVLPMEAYGTTLRLLKSLE---------  113 (385)
T ss_pred             EECCCCccHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHHh--CCCCEEEEcCCCchhHHHHHHHhh---------
Confidence            4466788899999999999864  567888999999999987543  356788888888876543221110         


Q ss_pred             CCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777          212 PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD  291 (477)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  291 (477)
                       ..++......      .  +    .++++++++   +.++++|++|.++++.|.+.+    +++|.++|+++|+++|+|
T Consensus       114 -~~g~~v~~~~------~--d----~~~l~~~i~---~~~tklV~ie~p~NPtG~v~d----l~~I~~la~~~gi~livD  173 (385)
T PRK08574        114 -KFGVKVVLAY------P--S----TEDIIEAIK---EGRTKLVFIETMTNPTLKVID----VPEVAKAAKELGAILVVD  173 (385)
T ss_pred             -ccCcEEEEEC------C--C----HHHHHHhcC---ccCceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEE
Confidence             0122211100      0  1    367777775   226789999998888887776    899999999999999999


Q ss_pred             CcccCccCCCCCCccccccCCCccee--eecccccC-ccce-EEEEe-CHHHHHhhcccccccCCCCcHHHHHHHHHHHH
Q 011777          292 EVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-GLPL-GAVVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLR  366 (477)
Q Consensus       292 Ev~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pi-g~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~  366 (477)
                      ++++ .+... .  .. ..|.  |++  +++|.++| |-.+ |++++ ++++.+.+.......+...+|+.++.++..|+
T Consensus       174 ~t~a-~~~~~-~--~l-~~Ga--Divv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~  246 (385)
T PRK08574        174 NTFA-TPLLY-R--PL-RHGA--DFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLK  246 (385)
T ss_pred             CCCC-ccccC-C--hh-hhCC--cEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccC
Confidence            9985 21111 1  11 1343  555  57899986 5443 64555 67777766533222233445776666666665


Q ss_pred             hhchhhHHHHHHHHHHHHHHHHHH
Q 011777          367 VIDKERRQAHCADVGSHLLGRLRT  390 (477)
Q Consensus       367 ~l~~~~~~~~~~~~~~~l~~~L~~  390 (477)
                      .+.  ...++..++..++.+.|++
T Consensus       247 tL~--~R~~~~~~na~~la~~L~~  268 (385)
T PRK08574        247 TLE--VRFERQCRNAMAIAEFLSE  268 (385)
T ss_pred             cHH--HHHHHHHHHHHHHHHHHHc
Confidence            442  2344445555566555543

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=1.5e-14  Score=139.79  Aligned_cols=309  Identities=19%  Similarity=0.181  Sum_probs=187.1

Q ss_pred             CCCHHHHHHHHHHHhhccccc--c---ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEE
Q 011777          112 HCHPDVLNAIFEQSKLLQHAT--T---IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIA  186 (477)
Q Consensus       112 h~~p~v~~Av~~~l~~~~~~~--~---~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~  186 (477)
                      .|++.+.+++..    ..+..  +   .+......++.+..+++++.. +-+.| +-|-..|..-+-   ..-++...|+
T Consensus       155 ~ca~~~~~~~~k----ygl~~css~~e~G~~~~hkelE~l~A~f~g~e-~a~vF-~mGf~TNs~~~p---~l~~~gsLIi  225 (519)
T KOG1357|consen  155 PCAEASLKSFDK----YGLSRCSSRHEAGTTEEHKELEELVARFLGVE-DAIVF-SMGFATNSMNIP---SLLGKGSLII  225 (519)
T ss_pred             cCChHHHHHHHH----hcccccccchhcccHHHHHHHHHHHHHhcCCc-ceEEE-eccccccccCcc---eeecCCccee
Confidence            356666665544    32221  1   245677889999999998763 33333 333333332222   1224455555


Q ss_pred             EccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc----c-----CCCCeeEEEe
Q 011777          187 LRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF----G-----TSGKVAGFIA  257 (477)
Q Consensus       187 ~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~----~-----~~~~~a~vi~  257 (477)
                      -+.--|+.......+++.....                    |..++   +.+||++++.    .     .+-+.-.||+
T Consensus       226 SDelNHaSi~~GaRLSgAtiRV--------------------fkHNd---m~~LEr~Lrd~I~~gqP~Thrp~kki~iiv  282 (519)
T KOG1357|consen  226 SDELNHASLITGARLSGATTRV--------------------FRHND---MQGLERLLRDAIVYGQPKTHRPWKKILICV  282 (519)
T ss_pred             eccccchheeccccccCceEEE--------------------EecCC---HHHHHHHHHHHHhcCCCCcCCcchheeeee
Confidence            5666676655444443322111                    11111   4566666642    1     1334568899


Q ss_pred             cccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccC--ccCCCCCCccccccCCCc---cee--eecccccC-ccce
Q 011777          258 ETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG--FGRTGSHYWGFETQGVIP---DIV--TMAKGIGN-GLPL  329 (477)
Q Consensus       258 epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g--fgr~G~~~~~~~~~gv~p---Div--t~sK~lg~-G~pi  329 (477)
                      |-+.++.|.++.    |+++.+++|||..+|+.||+++.  .|++|  ....+.+++.|   ||+  +|.|++|+ |   
T Consensus       283 egiysmEg~iv~----Lp~vvalkkkykayl~lDEAHSiGA~g~tG--rgvce~~g~d~~dvDImMGtftKSfga~G---  353 (519)
T KOG1357|consen  283 EGIYSMEGTIVD----LPEVVALKKKYKAYLYLDEAHSIGAMGATG--RGVCEYFGVDPEDVDIMMGTFTKSFGAAG---  353 (519)
T ss_pred             ccceeccCeecc----cHHHHHhhccccEEEEeeccccccccCCCC--cceeeccCCCchhheeecceehhhccccc---
Confidence            999999999998    89999999999999999999883  24565  23446677654   444  78999995 7   


Q ss_pred             EEEEeCHHHHHhhcccccccCCC--CcHHHHHHHHHHHHhhch-------hhHHHHHHHHHHHHHHHHHHHHHhCCCcee
Q 011777          330 GAVVTTPEIANVMAQKIQFNTFG--GNPVCSAGGLAVLRVIDK-------ERRQAHCADVGSHLLGRLRTLQERHDIIGD  400 (477)
Q Consensus       330 g~v~~~~~~~~~~~~~~~~~t~~--~~~~~~aaa~a~l~~l~~-------~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~  400 (477)
                      |++.+++++++.++......++.  -+|+.+.-.+..++++..       +.-.++++++..+++..|+..    +++..
T Consensus       354 Gyiagsk~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~----gfivy  429 (519)
T KOG1357|consen  354 GYIAGSKELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKM----GFIVY  429 (519)
T ss_pred             ceecCcHHHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcC----cEEEe
Confidence            89999999999988665444443  234444555666776643       234566777777777766553    22211


Q ss_pred             eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-----CCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          401 VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-----HGNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       401 v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      -......+.+-+.        .......+.+.|+++++.+.-++.     -....||+.+..++.|+++++++.++++
T Consensus       430 G~~dSpVvplll~--------~~~k~~~f~r~~l~~nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~  499 (519)
T KOG1357|consen  430 GNNDSPVVPLLLY--------GPAKIVAFSREMLERNIGVVVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRV  499 (519)
T ss_pred             cCCCCCcceeeec--------CcccccHHHHHHHhcCceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhh
Confidence            1111111111111        011234677889988776544321     1346799999999999999999998865

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.64  E-value=1.4e-13  Score=139.93  Aligned_cols=330  Identities=15%  Similarity=0.069  Sum_probs=193.9

Q ss_pred             CCHHHHHHHHHHHhhc-ccccc-ccCChHHHHHHHHHHhhCCCC-C-CEEEE--eCChHHHHHHHHHHHHhcc-------
Q 011777          113 CHPDVLNAIFEQSKLL-QHATT-IYLHHAIADFAEALASKMPGN-L-KVVYF--VNSGTEANELAMLMARLST-------  179 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~-~~~~~-~~~~~~~~~l~~~La~~~~~~-~-~~v~~--~~sGseA~~~Al~~ar~~~-------  179 (477)
                      .+|++.+++.+.+... .+... ....+..++..++++++++.+ . +.+.|  |+||||||..|++.+|...       
T Consensus        53 ~~p~~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~  132 (431)
T TIGR01788        53 MEPEARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAA  132 (431)
T ss_pred             CCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5889999998888642 11111 112356778889999998765 2 34555  8999999999998876321       


Q ss_pred             C---CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEE
Q 011777          180 G---NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFI  256 (477)
Q Consensus       180 ~---~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi  256 (477)
                      +   ....|+....-|-....+....+.          .+..++... .....+      .++|+++|+    +++.+|+
T Consensus       133 g~~~~~~~ii~s~~~H~sv~ka~~~lg~----------~v~~i~~d~-~~~~vd------~~~L~~~i~----~~t~lV~  191 (431)
T TIGR01788       133 GKPTDKPNLVMGSNVQVCWEKFARYFDV----------ELREVPMDP-GRYVID------PEQVVEAVD----ENTIGVV  191 (431)
T ss_pred             CCCCCCcEEEEcCcchHHHHHHHHHcCc----------eeEEEecCC-CceeeC------HHHHHHHHh----hCCeEEE
Confidence            1   122444444445433222111110          122232211 001111      578888886    3567888


Q ss_pred             ecccCCCCCeeeCCchhHHHHHHHHHHh------CcEEEEcCcccCccC---CCCCCccccccCCCcceeeec--ccccC
Q 011777          257 AETIQGVGGAVELAPGYLKLVYDIVRKA------GGVCIADEVQTGFGR---TGSHYWGFETQGVIPDIVTMA--KGIGN  325 (477)
Q Consensus       257 ~epi~~~~G~~~~~~~~l~~l~~l~~~~------gillI~DEv~~gfgr---~G~~~~~~~~~gv~pDivt~s--K~lg~  325 (477)
                      +.-.+++.|.+.|    +++|.++|+++      |+++++|.+|.|+-.   .+...+.+.  ....|.++++  |.+.+
T Consensus       192 ~t~g~t~tG~idp----i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~--~~~~DSis~s~HK~~~~  265 (431)
T TIGR01788       192 CILGTTYTGEYED----VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR--LPRVKSINVSGHKYGLV  265 (431)
T ss_pred             EEeCCCCCcccCC----HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC--CCCceEEEECchhccCC
Confidence            8889999999999    99999999999      999999999997531   221112222  2245778876  87655


Q ss_pred             ccceEEEEeCHH--HHHhhccc--cc-----ccCCCCc-H-HHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHH
Q 011777          326 GLPLGAVVTTPE--IANVMAQK--IQ-----FNTFGGN-P-VCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTL  391 (477)
Q Consensus       326 G~pig~v~~~~~--~~~~~~~~--~~-----~~t~~~~-~-~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l  391 (477)
                      ...+|+++.+++  +.+.+...  ..     ..++.+. + ...++....|..+..   ++..++..++.+++.++|+++
T Consensus       266 P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~  345 (431)
T TIGR01788       266 YPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKL  345 (431)
T ss_pred             CCCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            677899988764  32332210  00     0122221 1 122334445554443   345566666777777777654


Q ss_pred             HHhCCCceee-e-ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceee----ccCC-CCCEEEEeCCCCCcHHHHH
Q 011777          392 QERHDIIGDV-R-GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVG----KGGL-HGNVFRIKPPMCFTKDDAD  464 (477)
Q Consensus       392 ~~~~~~~~~v-~-g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~~~-~~~~iRi~p~~~~t~e~i~  464 (477)
                          +.+.-+ + ....++.|.+..+.    .......++.+.|.++|+.+.    |... ..-++|++..-.++++.++
T Consensus       346 ----~~~el~~~~~~~~iV~Fr~~~~~----~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~  417 (431)
T TIGR01788       346 ----GPFEIISDGSGIPLVAFKLKDDA----DPGYTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAE  417 (431)
T ss_pred             ----CCEEEeeCCCCceEEEEEeCCCC----CCCcCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHH
Confidence                322111 1 23344555553211    011124578889999998642    2211 1246898776678899999


Q ss_pred             HHHHHHHHHHhhC
Q 011777          465 FLVDALDYSMSKL  477 (477)
Q Consensus       465 ~~l~~l~~~l~~l  477 (477)
                      .+++.|+.++..+
T Consensus       418 ~~~~~~~~~~~~~  430 (431)
T TIGR01788       418 LLIEDIEAALAYL  430 (431)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988653

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.64  E-value=5.4e-14  Score=140.51  Aligned_cols=310  Identities=10%  Similarity=0.031  Sum_probs=187.2

Q ss_pred             CCHHHHHHHHHHHhhc----------cccccccCChHHHHHHHHHHhhCCC--CCCEEEEeCChHHHHHHHHHHHHhccC
Q 011777          113 CHPDVLNAIFEQSKLL----------QHATTIYLHHAIADFAEALASKMPG--NLKVVYFVNSGTEANELAMLMARLSTG  180 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~----------~~~~~~~~~~~~~~l~~~La~~~~~--~~~~v~~~~sGseA~~~Al~~ar~~~~  180 (477)
                      .+++|++|+...+.+.          .|.... ..+...+..++|+++++.  +.+.+++++||+.|+|+++.-...  +
T Consensus        14 ~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~-f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~--~   90 (360)
T PRK05355         14 LPEEVLEQAQQELLDWNGSGMSVMEISHRSKE-FEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLG--G   90 (360)
T ss_pred             CCHHHHHHHHHHhhccccCCccccccCCCCHH-HHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCC--C
Confidence            4899999999887432          121111 125577888999998874  234566668999999999875433  4


Q ss_pred             CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHH-HHhccCCCCeeEEEecc
Q 011777          181 NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQD-HIDFGTSGKVAGFIAET  259 (477)
Q Consensus       181 ~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~-~i~~~~~~~~a~vi~ep  259 (477)
                      ++++++...+..|....-+......          ...+..+...... .      ..++++ .++    .++.+|.+..
T Consensus        91 g~~~l~i~~G~fg~r~~~~a~~~g~----------~~~~~~~~~~g~~-~------~~~~~~~~l~----~~~~~V~~th  149 (360)
T PRK05355         91 GKKADYVDTGSWSKKAIKEAKKYGE----------VNVAASSEDDGFT-Y------IPPLDEWQLS----DDAAYVHYTS  149 (360)
T ss_pred             CCeEEEEECCHHHHHHHHHHHHhCC----------ceEEecccccCCC-C------CCChhhccCC----CCCCEEEEcc
Confidence            4667777777777655322221100          0111111001000 0      122333 343    2466777777


Q ss_pred             cCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCHH
Q 011777          260 IQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPE  337 (477)
Q Consensus       260 i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~  337 (477)
                      +-..+|+..++   +++|      ||+++|+|-+|+ +|.   ....++.+    |++++|  |++| ...+|+++++++
T Consensus       150 ~eTstGv~~~~---i~~i------~g~l~vVDavss-~g~---~~idv~~~----d~~~~ssqK~lg-P~Glg~l~~s~~  211 (360)
T PRK05355        150 NETIDGTEFHE---LPDT------GDVPLVADMSSD-ILS---RPIDVSKF----GLIYAGAQKNIG-PAGLTIVIVRED  211 (360)
T ss_pred             CCCcceEecCc---cccc------CCCcEEEEcCcc-ccC---ccCCHHHc----cEEEEecccccc-CCceEEEEECHH
Confidence            77777876532   4444      899999999998 432   23333332    466665  9885 445899999999


Q ss_pred             HHHhhccc-----------ccccC-CCCcHHHHHHHHHHHHhhchh----hHHHHHHHHHHHHHHHHHHHHHhCCCcee-
Q 011777          338 IANVMAQK-----------IQFNT-FGGNPVCSAGGLAVLRVIDKE----RRQAHCADVGSHLLGRLRTLQERHDIIGD-  400 (477)
Q Consensus       338 ~~~~~~~~-----------~~~~t-~~~~~~~~aaa~a~l~~l~~~----~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-  400 (477)
                      +.+.+.+.           ....+ ++.|.....+..++|+.+.++    +..++.+++.++++++|+++    +.... 
T Consensus       212 ~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~----~~~~~~  287 (360)
T PRK05355        212 LLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSS----DFYRNP  287 (360)
T ss_pred             HHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhC----CCcccC
Confidence            88776541           11112 334556666666888887655    34555556666666666654    32211 


Q ss_pred             --eeccc-eeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          401 --VRGRG-LMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       401 --v~g~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                        ...+. ..+.+.+        +......++...+.++|+.+..+....+.+|+++...+|++||+.+++.|++++..
T Consensus       288 ~~~~~rs~~v~sf~~--------~~~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~  358 (360)
T PRK05355        288 VAPEDRSRMNVPFTL--------ADEELDKKFLAEAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFERR  358 (360)
T ss_pred             CChhhcCCcEEEEEc--------CChHHHHHHHHHHHHCCCcccCCCCccCcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence              01112 3344443        22223356777888999998555322478999999999999999999999998753

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.64  E-value=1.2e-13  Score=138.72  Aligned_cols=236  Identities=13%  Similarity=0.036  Sum_probs=147.2

Q ss_pred             cccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCC
Q 011777          133 TIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP  212 (477)
Q Consensus       133 ~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  212 (477)
                      .+..++...+|+++|+++.+.  +.+++++||++|+..++....  .++++||+.++.|.+.........         .
T Consensus        56 ~r~~npt~~~Le~~iA~le~~--~~~~~~~sG~~Ai~~~l~all--~~GD~Vvv~~~~Y~~t~~l~~~~l---------~  122 (394)
T PRK09028         56 GRRGTPTHFAFQAAIVELEGG--AGTALYPSGAAAISNALLSFL--KAGDHLLMVDSCYEPTRDLCDKIL---------K  122 (394)
T ss_pred             cCCCCchHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEEECCCcHHHHHHHHHhh---------h
Confidence            344567788999999998754  468899999999999887543  367889999999866543211100         0


Q ss_pred             CCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcC
Q 011777          213 QGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADE  292 (477)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  292 (477)
                      ..|+....++.      . +    .++++++++    +++++|++|.+.|+.|.+.+    +++|.++|++||+++|+|+
T Consensus       123 ~~Gi~v~~v~~------~-~----~e~l~~~l~----~~TklV~lespsNPtg~v~d----l~~I~~la~~~g~~lvvD~  183 (394)
T PRK09028        123 GFGIETTYYDP------M-I----GEGIRELIR----PNTKVLFLESPGSITMEVQD----VPTLSRIAHEHDIVVMLDN  183 (394)
T ss_pred             hcceEEEEECC------C-C----HHHHHHhcC----cCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEEC
Confidence            01222211110      0 1    256777765    46889999998888876655    9999999999999999999


Q ss_pred             cccCccCCCCCCccccccCCCccee--eecccccC-c-cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhh
Q 011777          293 VQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-G-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVI  368 (477)
Q Consensus       293 v~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l  368 (477)
                      +|+.    +   ..+.-.....|++  +.+|.++| | .-.|+++.++++.+.+...........+|..+...+..|+.+
T Consensus       184 t~a~----p---~~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL  256 (394)
T PRK09028        184 TWAS----P---INSRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHSYLMGQCTSPDDVYLAMRGLRTL  256 (394)
T ss_pred             Cccc----c---ccCCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcH
Confidence            9972    2   1122223345766  46799987 3 777888778877665543221112234566666555555433


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhCCCcee------------------eeccceeEEEEEe
Q 011777          369 DKERRQAHCADVGSHLLGRLRTLQERHDIIGD------------------VRGRGLMVGMELV  413 (477)
Q Consensus       369 ~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~~  413 (477)
                      .  -..++..++...+.+.|++    +|.+..                  ..|.|.|+.+++.
T Consensus       257 ~--lR~~~~~~na~~la~~L~~----~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~  313 (394)
T PRK09028        257 G--VRLAQHEKNALKVANWLAT----RPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLK  313 (394)
T ss_pred             H--HHHHHHHHHHHHHHHHHhc----CCCccEEECCCCCCCccHHHHHHhccCCCceEEEEEC
Confidence            2  2234444455555555443    332211                  2356788888884

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.64  E-value=1.1e-13  Score=137.54  Aligned_cols=312  Identities=12%  Similarity=0.034  Sum_probs=183.6

Q ss_pred             CCHHHHHHHHHHHhhccc--ccc----ccCC---hHHHHHHHHHHhhCCC-CCCEEEEe-CChHHHHHHHHHHHHhccCC
Q 011777          113 CHPDVLNAIFEQSKLLQH--ATT----IYLH---HAIADFAEALASKMPG-NLKVVYFV-NSGTEANELAMLMARLSTGN  181 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~--~~~----~~~~---~~~~~l~~~La~~~~~-~~~~v~~~-~sGseA~~~Al~~ar~~~~~  181 (477)
                      .+..|++++.+.+.....  ...    ....   ....++.++|++++.. ...+|+|+ +|||+|+|+++.....  +.
T Consensus         3 ~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~--~~   80 (349)
T TIGR01364         3 LPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLA--EG   80 (349)
T ss_pred             CCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCC--CC
Confidence            356899999888774321  000    0111   4466778888888864 22345555 6699999999885432  45


Q ss_pred             ceEEEEccCccCCcccccccccCCCCCCCCCCCCe-eeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEeccc
Q 011777          182 LGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEI-HHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETI  260 (477)
Q Consensus       182 ~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi  260 (477)
                      ++++++..++.|....-++...           |. ..+..+  ...++++     ..++++...   ..++.+|.+..+
T Consensus        81 ~~~l~i~~G~fg~r~~~~a~~~-----------g~~~~~~~~--~~~~~~~-----~~~~~~~~~---~~~~~~v~~th~  139 (349)
T TIGR01364        81 KVADYIVTGAWSKKAAKEAKKY-----------GVVNVVASG--KEGNYTK-----IPDPSTWEI---SEDAAYVHYCAN  139 (349)
T ss_pred             CeEEEEECCHHHHHHHHHHHHh-----------CCcEEEecc--ccCCCCC-----CCCHHhcCC---CCCCCEEEEcCC
Confidence            6777777888776553332211           11 111111  0111111     112332221   135666777666


Q ss_pred             CCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCHHH
Q 011777          261 QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPEI  338 (477)
Q Consensus       261 ~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~~  338 (477)
                      -..+|+..+         ++++.+|+++++|-|++ +|.   ....++.+    |++++|  |++| ...+|+++.++++
T Consensus       140 ETstGv~~~---------~l~~~~~~l~iVDavss-~g~---~~id~~~~----d~~~~ssqK~lg-P~Glg~l~~s~~~  201 (349)
T TIGR01364       140 ETIHGVEFR---------ELPDVKNAPLVADMSSN-ILS---RPIDVSKF----GLIYAGAQKNIG-PAGLTVVIVRKDL  201 (349)
T ss_pred             CCcccEecc---------eecccCCCeEEEEcccc-ccC---ccCCHHHc----cEEEEecccccC-CCceEEEEECHHH
Confidence            667776543         67777899999999998 432   23333332    366555  9985 4458999999998


Q ss_pred             HHhhcccc-----------cccCC-CCcHHHHHHHHHHHHhhchh-h---HHHHHHHHHHHHHHHHHHHHHhCCCcee-e
Q 011777          339 ANVMAQKI-----------QFNTF-GGNPVCSAGGLAVLRVIDKE-R---RQAHCADVGSHLLGRLRTLQERHDIIGD-V  401 (477)
Q Consensus       339 ~~~~~~~~-----------~~~t~-~~~~~~~aaa~a~l~~l~~~-~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~-v  401 (477)
                      .+.+....           ...++ +.|.....+..++|+.+.++ +   ..++.+++.++++++|+++.   ++... .
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~---gl~~~~~  278 (349)
T TIGR01364       202 LGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSN---GFYRNPV  278 (349)
T ss_pred             HhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCC---CeeccCC
Confidence            87654320           11223 44555666666888887654 3   44555556666666665541   12111 1


Q ss_pred             --eccc-eeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          402 --RGRG-LMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       402 --~g~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                        ..+. ..+.+.+..        .....++...+.++|+.+.++....+.+|+++...+|+||||.++++|++++++
T Consensus       279 ~~~~rs~~v~sf~~~~--------~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRvS~~~~nt~edid~l~~al~~~~~~  348 (349)
T TIGR01364       279 DPRNRSRMNVVFTLGN--------EELEKRFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFQKK  348 (349)
T ss_pred             CHHHcCCeEEEEecCC--------hhHhHHHHHHHHHCCCcccCCccccCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence              1122 334444321        112356667888999966554322468999999999999999999999998764

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.63  E-value=1.2e-13  Score=140.58  Aligned_cols=167  Identities=19%  Similarity=0.203  Sum_probs=115.2

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +..+++.++...+|+++|+++.+.  +..++++||++|+.++++....  ++++||+..+.|++........        
T Consensus        50 ~~y~r~~~pt~~~Le~~lA~l~g~--~~~l~~ssG~~Ai~~al~al~~--~Gd~Vl~~~~~Y~~t~~~~~~~--------  117 (425)
T PRK06084         50 NIYTRIMNPTNDVLEQRVAALEGG--VGALAVASGMAAITYAIQTIAE--AGDNIVSVAKLYGGTYNLLAHT--------  117 (425)
T ss_pred             ccccCCCCchHHHHHHHHHHHhCC--CceeEehhHHHHHHHHHHHHhC--CCCEEEEeCCCcchHHHHHHHh--------
Confidence            334456678888999999999864  4677899999999999986543  4678999999998643322111        


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                       .+..++.....+.      . |    .++++++++    +++++|++|+++++.|.+.+    +++|.++|++||+++|
T Consensus       118 -l~~~gi~v~~~d~------~-d----~e~le~ai~----~~tklV~lesp~NPtG~v~d----l~~I~~la~~~~i~vV  177 (425)
T PRK06084        118 -LPRIGIETRFAAH------D-D----IAALEALID----ERTKAVFCESIGNPAGNIID----IQALADAAHRHGVPLI  177 (425)
T ss_pred             -cccceeEEEEECC------C-C----HHHHHHHhc----cCCcEEEEeCCCCCCCeecC----HHHHHHHHHHcCCEEE
Confidence             0011222211110      0 1    477888876    36789999998889997776    8999999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCccee--eecccccC-ccceEEEEeC
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-GLPLGAVVTT  335 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pig~v~~~  335 (477)
                      +||+|+ .+...      .......|++  +++|.++| |.++|.+++.
T Consensus       178 vD~a~a-~~~~~------~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~  219 (425)
T PRK06084        178 VDNTVA-TPVLC------RPFEHGADIVVHSLTKYIGGHGTSIGGIVVD  219 (425)
T ss_pred             EECCCc-ccccC------ChhhcCCCEEEECchhcccccccceeEEEEe
Confidence            999997 22211      1122345666  57899997 6788766653

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.63  E-value=2e-13  Score=149.33  Aligned_cols=302  Identities=15%  Similarity=0.159  Sum_probs=195.3

Q ss_pred             hHHHHHHHHHHhhCCCCCCEEEEeCChH----HHHHHHHHHHHhccC--CceEEEEccCccCCcccccccccCCCCCCCC
Q 011777          138 HAIADFAEALASKMPGNLKVVYFVNSGT----EANELAMLMARLSTG--NLGMIALRNAYHGGSSGTIGLTALNTWKYPI  211 (477)
Q Consensus       138 ~~~~~l~~~La~~~~~~~~~v~~~~sGs----eA~~~Al~~ar~~~~--~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  211 (477)
                      +...++.++|+++++.  +.|.|+++++    +|+..+++......|  +..+|+....-||.........         
T Consensus       568 ~~~~~~r~~la~i~g~--~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~---------  636 (993)
T PLN02414        568 EMFEDLGDLLCEITGF--DSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMC---------  636 (993)
T ss_pred             HHHHHHHHHHHHHhCC--CeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHHC---------
Confidence            4457899999999954  8899999888    888888886654322  1236666678888766444432         


Q ss_pred             CCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777          212 PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD  291 (477)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  291 (477)
                         |+..+.+|....+..+      +++|+++++. +.+++++|++...++.+|...+    +++|.++|+++|+++++|
T Consensus       637 ---G~~vv~v~~d~~G~vD------le~L~~~i~~-~~~~ta~V~vt~pSn~gg~e~~----I~eI~~iah~~Galv~vD  702 (993)
T PLN02414        637 ---GMKIVVVGTDAKGNIN------IEELRKAAEA-HKDNLAALMVTYPSTHGVYEEG----IDEICDIIHDNGGQVYMD  702 (993)
T ss_pred             ---CCEEEEeccCCCCCcC------HHHHHHHHhc-cCCCeEEEEEECCCccccccch----HHHHHHHHHHcCCEEEEE
Confidence               3333333322222222      6888888872 1247899999888888887777    999999999999999999


Q ss_pred             CcccCccCCCCCCccccccCCCcceeee--ccccc-----CccceEEEEeCHHHHHhhcccc-----------c---ccC
Q 011777          292 EVQTGFGRTGSHYWGFETQGVIPDIVTM--AKGIG-----NGLPLGAVVTTPEIANVMAQKI-----------Q---FNT  350 (477)
Q Consensus       292 Ev~~gfgr~G~~~~~~~~~gv~pDivt~--sK~lg-----~G~pig~v~~~~~~~~~~~~~~-----------~---~~t  350 (477)
                      -+|. .+..+  +  ..-.....|++++  .|+|+     ||..+|++.++++++..+....           .   .+|
T Consensus       703 gAq~-~a~~~--l--~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt  777 (993)
T PLN02414        703 GANM-NAQVG--L--TSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGT  777 (993)
T ss_pred             ecCH-HhccC--c--CCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCC
Confidence            9985 22111  0  1112345688876  49776     3467999999998876654310           0   123


Q ss_pred             CC----CcHHHHHHHHHHHHhhchhhH---HHHHHHHHHHHHHHHHHHHHhCCCceeeeccce---eEEEEEeeCCCCCC
Q 011777          351 FG----GNPVCSAGGLAVLRVIDKERR---QAHCADVGSHLLGRLRTLQERHDIIGDVRGRGL---MVGMELVTDRKEKT  420 (477)
Q Consensus       351 ~~----~~~~~~aaa~a~l~~l~~~~~---~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~---~~~i~~~~~~~~~~  420 (477)
                      ..    ++.+...++...++.+..+.+   .++...+..|++++|.+.   ++.... ...|.   -+.+.+..   .+.
T Consensus       778 ~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~---~~~~~~-~~~~~~~hEfv~~~~~---l~~  850 (993)
T PLN02414        778 ISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGH---YPVLFR-GKNGTCAHEFIIDLRP---FKN  850 (993)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhh---CCcccc-CCCCCeeeeEEEeccc---ccc
Confidence            22    344555566666776666666   667777888998888762   332221 11222   11222221   000


Q ss_pred             ccHHHHHHHHHHHHHcCceeeccC-CCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          421 PAKAETAVLFEKLRELGVLVGKGG-LHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       421 ~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ........+.+.|.+.|+...... ...+.+|++|.-..+++|||+++++|..+..+
T Consensus       851 ~~g~~~~di~krL~d~Gihapt~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e  907 (993)
T PLN02414        851 TAGIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREE  907 (993)
T ss_pred             ccCCCHHHHHHHHHHcCcEEeeeccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHH
Confidence            001224678899999999865421 12578999999999999999999999877543

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.63  E-value=2.2e-13  Score=137.37  Aligned_cols=308  Identities=14%  Similarity=0.080  Sum_probs=177.5

Q ss_pred             HHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCC
Q 011777          115 PDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGG  194 (477)
Q Consensus       115 p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~  194 (477)
                      ++-.+++.+.+.....+   ...+...++++++++.++.  +++++++||++|+.++++.+. ..+++.||+...+|.+.
T Consensus        11 ~~~~~~~~~~l~~~~~~---g~~~~~~~~e~~la~~~g~--~~~v~~~sgt~al~~~l~~~~-~~~Gd~Viv~~~t~~~~   84 (375)
T PRK11706         11 GTELDYIQQAMSSGKLC---GDGGFTRRCQQWLEQRFGS--AKVLLTPSCTAALEMAALLLD-IQPGDEVIMPSYTFVST   84 (375)
T ss_pred             HHHHHHHHHHHHcCCcc---CCCHHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHhC-CCCCCEEEECCCCcHHH
Confidence            34466677766553221   1246678899999998744  789999999999998887542 34567899988888866


Q ss_pred             cccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhH
Q 011777          195 SSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYL  274 (477)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l  274 (477)
                      .......             |...+..+.... .+..|    .+++++.++    .++++|++..   ..|....    +
T Consensus        85 ~~~~~~~-------------G~~~v~~d~d~~-~~~~d----~~~le~~i~----~~tk~i~~~~---~~G~~~~----~  135 (375)
T PRK11706         85 ANAFVLR-------------GAKIVFVDIRPD-TMNID----ETLIEAAIT----PKTRAIVPVH---YAGVACE----M  135 (375)
T ss_pred             HHHHHHc-------------CCEEEEEecCCC-cCCcC----HHHHHHhcC----CCCeEEEEeC---CCCCccC----H
Confidence            4443332             222222111100 11112    477888775    2466666432   3454444    8


Q ss_pred             HHHHHHHHHhCcEEEEcCcccCcc-CCCCCCccccccCCCcceeeec----ccccCccceEEEEeCHHHHHhhccccc--
Q 011777          275 KLVYDIVRKAGGVCIADEVQTGFG-RTGSHYWGFETQGVIPDIVTMA----KGIGNGLPLGAVVTTPEIANVMAQKIQ--  347 (477)
Q Consensus       275 ~~l~~l~~~~gillI~DEv~~gfg-r~G~~~~~~~~~gv~pDivt~s----K~lg~G~pig~v~~~~~~~~~~~~~~~--  347 (477)
                      ++|.++|++||+++|.|++|+-+. ..| ..     .|..-|+.+||    |.++.|.+.++++.++++.+.+.....  
T Consensus       136 ~~i~~la~~~~i~vIeD~a~a~g~~~~~-~~-----~g~~~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~~~~~~g  209 (375)
T PRK11706        136 DTIMALAKKHNLFVVEDAAQGVMSTYKG-RA-----LGTIGHIGCFSFHETKNYTAGEGGALLINDPALIERAEIIREKG  209 (375)
T ss_pred             HHHHHHHHHcCCEEEEECccccccccCC-ee-----eecCcCEEEEeCCCCccccccCCeEEEECCHHHHHHHHHHHHcC
Confidence            999999999999999999997332 122 11     12224777888    999866665666667887765443211  


Q ss_pred             -------------------ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCce--eee----
Q 011777          348 -------------------FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIG--DVR----  402 (477)
Q Consensus       348 -------------------~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~--~v~----  402 (477)
                                         +.++-.+.+.++.+++.++.+  ++..++-+++.+++.+.|..+.. .+.+.  ...    
T Consensus       210 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l--~~~~~~R~~~~~~~~~~L~~~~~-~~~~~~~~~~~~~~  286 (375)
T PRK11706        210 TNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAA--DRINQRRLALWQRYYDALAPLAE-AGRIELPSIPDDCK  286 (375)
T ss_pred             CCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCc-CCeeecCCCCCCCc
Confidence                               111222345555555555543  33445555555555555544310 01111  011    


Q ss_pred             ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-----------------C-------CCCEEEEeCCCCC
Q 011777          403 GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-----------------L-------HGNVFRIKPPMCF  458 (477)
Q Consensus       403 g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------~-------~~~~iRi~p~~~~  458 (477)
                      ....++++.+..        ....+++.+.|.++||.+....                 .       ..+.+.+=.....
T Consensus       287 ~~~~~~~~~~~~--------~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l  358 (375)
T PRK11706        287 HNAHMFYIKLRD--------LEDRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNL  358 (375)
T ss_pred             eeeEEEEEEECC--------cCCHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCC
Confidence            112233444421        1135678999999999854210                 0       1123333222336


Q ss_pred             cHHHHHHHHHHHHHHH
Q 011777          459 TKDDADFLVDALDYSM  474 (477)
Q Consensus       459 t~e~i~~~l~~l~~~l  474 (477)
                      +++|++..++.|++++
T Consensus       359 ~~~~~~~i~~~i~~~~  374 (375)
T PRK11706        359 TDVEQRTVIDTILEFF  374 (375)
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            8999999999998865

>PLN03032 serine decarboxylase; Provisional

Probab=99.63  E-value=3.2e-13  Score=134.41  Aligned_cols=286  Identities=17%  Similarity=0.117  Sum_probs=177.4

Q ss_pred             ChHHHHHHHHHHhhCCCCCCEE--EEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCC
Q 011777          137 HHAIADFAEALASKMPGNLKVV--YFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQG  214 (477)
Q Consensus       137 ~~~~~~l~~~La~~~~~~~~~v--~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~  214 (477)
                      .....++.++++++++.+.+.+  +||+||||||..|+..+|...++ .+++....-|-...-+....+.          
T Consensus        65 ~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~-~~vi~s~~~H~Sv~kaa~~lg~----------  133 (374)
T PLN03032         65 RQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPD-GILYASRESHYSVFKAARMYRM----------  133 (374)
T ss_pred             HHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCC-cEEEeCCCceeHHHHHHHHcCC----------
Confidence            3456788888999987665555  99999999999999999875443 3556666666554433322221          


Q ss_pred             CeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhC-----cEEE
Q 011777          215 EIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAG-----GVCI  289 (477)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g-----illI  289 (477)
                      ++..++..  ..+..+      +++|++.|+.. ..++.+|++.-.+++.|.+.|    +++|.++|++||     ++++
T Consensus       134 ~~~~V~~d--~~g~id------~~~L~~~i~~~-~~~~~lvv~tagtt~tG~idp----i~eI~~i~~~~g~~~~~~~lH  200 (374)
T PLN03032        134 EAVKVPTL--PSGEID------YDDLERALAKN-RDKPAILNVNIGTTVKGAVDD----LDRILRILKELGYTEDRFYIH  200 (374)
T ss_pred             CCeEeeeC--CCCcCc------HHHHHHHHHHc-CCCCEEEEEEecCcCCccCCC----HHHHHHHHHHhCCCCCCeeEE
Confidence            12222221  111222      58888888732 225667777777788898888    999999999997     5899


Q ss_pred             EcCcccCccC--CC-CCCccccccCCCcceeeec--ccccCccceEEEEeCHHHHHhhcccc-----cccCCCC--cHHH
Q 011777          290 ADEVQTGFGR--TG-SHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPEIANVMAQKI-----QFNTFGG--NPVC  357 (477)
Q Consensus       290 ~DEv~~gfgr--~G-~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~~~~~~~~~~-----~~~t~~~--~~~~  357 (477)
                      +|.+|.|+-.  .. ...+.+   ....|.++++  |-++...++|+++.+++..+.+....     ...|+.+  +...
T Consensus       201 vDaA~gg~~~p~~~~~~~~~~---~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~  277 (374)
T PLN03032        201 CDGALFGLMMPFVSRAPEVTF---RKPIGSVSVSGHKFLGCPMPCGVALTRKKHVKALSQNVEYLNSRDATIMGSRNGHA  277 (374)
T ss_pred             EEccchhhhhhccCCCcccCC---CcCCcEEEECcccccCCCcCeEEEEEEchhhHhhccCCcccCCCCCcccCCCchHH
Confidence            9999986411  00 001111   1246878776  86665788999999988776553211     1123333  3455


Q ss_pred             HHHHHHHHHhhchhh---HHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHH
Q 011777          358 SAGGLAVLRVIDKER---RQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR  434 (477)
Q Consensus       358 ~aaa~a~l~~l~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~  434 (477)
                      .++..++|+.+..+.   ..++..++.+++.++|++.    +......+..+.  +-|..+      ..   .    . .
T Consensus       278 ~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~----~~~~~~~p~~~~--V~f~~~------~~---~----~-~  337 (374)
T PLN03032        278 PLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA----GLTCRLNELSST--VVFERP------MD---E----A-F  337 (374)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC----CCcEEECCCceE--EEEcCC------Cc---H----h-H
Confidence            666677777766554   4566666777888877663    222222223333  333221      10   1    1 2


Q ss_pred             HcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777          435 ELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDY  472 (477)
Q Consensus       435 ~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~  472 (477)
                      .+|..+.+.   ++.+|+.....++++.+|++++-|.+
T Consensus       338 ~~~w~l~~~---~~~~hi~vm~~~~~~~id~fi~dl~~  372 (374)
T PLN03032        338 IKKWQLACE---GDIAHVVVMPNVTVEKLDEFVEELVE  372 (374)
T ss_pred             hheeeeccc---CCEEEEEECCCCCHHHHHHHHHHHhc
Confidence            246555532   35778877777889999999998865

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.62  E-value=2.2e-13  Score=140.29  Aligned_cols=324  Identities=13%  Similarity=0.027  Sum_probs=179.6

Q ss_pred             CCCHHHHHHHHHHH-hhccccc--cccC--ChHH---HHHHHH-HHhhCCCCCCEEEE---eCChHHHHHHHHHHHHhcc
Q 011777          112 HCHPDVLNAIFEQS-KLLQHAT--TIYL--HHAI---ADFAEA-LASKMPGNLKVVYF---VNSGTEANELAMLMARLST  179 (477)
Q Consensus       112 h~~p~v~~Av~~~l-~~~~~~~--~~~~--~~~~---~~l~~~-La~~~~~~~~~v~~---~~sGseA~~~Al~~ar~~~  179 (477)
                      +..|.|.+|+...+ .++....  .+|.  +...   ++++.+ ..+.+....+.+.+   .+||+.||.+++....  .
T Consensus        45 ~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~--~  122 (475)
T PLN03226         45 FTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALL--Q  122 (475)
T ss_pred             cCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhC--C
Confidence            35799999998888 4432211  1211  2233   333333 44455544333333   4899999999887553  3


Q ss_pred             CCceEEEEccCc-----cCCcccccccccCCCCCCCCCCCCeeeecCCC-CcCCCCCCCHHHHHHHHHHHHhccCCCCee
Q 011777          180 GNLGMIALRNAY-----HGGSSGTIGLTALNTWKYPIPQGEIHHVVNPD-PYHGSFGSDAARYAQDLQDHIDFGTSGKVA  253 (477)
Q Consensus       180 ~~~~ii~~~~~y-----hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~le~~i~~~~~~~~a  253 (477)
                      +++.|+..+-.-     |++......++....        .+..+++.. ......+      .++|++++...   +++
T Consensus       123 pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~--------~~~~~~y~~~~~~g~iD------~d~Le~~l~~~---~pk  185 (475)
T PLN03226        123 PHDRIMGLDLPHGGHLSHGYQTDGKKISATSI--------YFESMPYRLDESTGLID------YDKLEKKAMLF---RPK  185 (475)
T ss_pred             CCCEEEECCCCcCcchhhhhhhcccccccceE--------EEEeeeeeecCCCCCcC------HHHHHHHHhhc---CCe
Confidence            567777744211     332111111111000        001111100 0001111      58888887632   344


Q ss_pred             EEEe-cccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccCccceE
Q 011777          254 GFIA-ETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGNGLPLG  330 (477)
Q Consensus       254 ~vi~-epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G~pig  330 (477)
                      .|++ +.+.+   ...+    +++|+++|++||++|++|++|. +|..+....... .+ ..|++  |++|+|.|... |
T Consensus       186 lIv~~~S~~s---~~~D----~a~i~~ia~~~ga~LlvD~AH~-~Gli~~~~~~~p-~~-~~Div~~t~hK~L~GP~G-g  254 (475)
T PLN03226        186 LIIAGASAYP---RDWD----YARMRKIADKVGALLMCDMAHI-SGLVAAQEAASP-FE-YCDVVTTTTHKSLRGPRG-G  254 (475)
T ss_pred             EEEEecCcCC---CccC----HHHHHHHHHHcCCEEEEEchhh-hCcccCCCCCCC-CC-CCeEEEecCcccccCCCc-e
Confidence            5555 54433   2333    7899999999999999999987 544331111111 11 36766  46799965222 7


Q ss_pred             EEEeCHHHH-----------Hh---hccc-ccccCCCCcHHHHHHHHHHHHhhchh---hHHHHHHHHHHHHHHHHHHHH
Q 011777          331 AVVTTPEIA-----------NV---MAQK-IQFNTFGGNPVCSAGGLAVLRVIDKE---RRQAHCADVGSHLLGRLRTLQ  392 (477)
Q Consensus       331 ~v~~~~~~~-----------~~---~~~~-~~~~t~~~~~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~  392 (477)
                      ++++++++.           +.   +... ....+-+.++...++..++++.+.+.   ...+++.++.++|++.|.+. 
T Consensus       255 ~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~-  333 (475)
T PLN03226        255 MIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSK-  333 (475)
T ss_pred             EEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhC-
Confidence            888887544           22   2111 11122234566666677888887643   45788888888888887763 


Q ss_pred             HhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-------CCCCEEEE----eCCCCCcHH
Q 011777          393 ERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-------LHGNVFRI----KPPMCFTKD  461 (477)
Q Consensus       393 ~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~iRi----~p~~~~t~e  461 (477)
                       .+.++..- ....+..+++...       .....++.+.|.+.||++..+.       .....+|+    .....++++
T Consensus       334 -G~~l~~~~-t~~hi~lv~~~~~-------gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~  404 (475)
T PLN03226        334 -GYKLVTGG-TDNHLVLWDLRPL-------GLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEK  404 (475)
T ss_pred             -CCEEEcCC-CCCCEEEEEccCC-------CCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHH
Confidence             22222211 1235556666321       1123467778888999987542       12345787    445667899


Q ss_pred             HHHHHHHHHHHHHh
Q 011777          462 DADFLVDALDYSMS  475 (477)
Q Consensus       462 ~i~~~l~~l~~~l~  475 (477)
                      |++++.+.|.++++
T Consensus       405 d~~~ia~~i~~~~~  418 (475)
T PLN03226        405 DFEKVAEFLHRAVT  418 (475)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998875

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.61  E-value=2.1e-13  Score=137.23  Aligned_cols=285  Identities=15%  Similarity=0.142  Sum_probs=169.6

Q ss_pred             ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCC
Q 011777          134 IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ  213 (477)
Q Consensus       134 ~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~  213 (477)
                      ++.++...+|+++|+++.+.  +.+++++||+.|+..++.+   ..+++.||+....|++..........         .
T Consensus        43 r~~~p~~~~le~~la~l~g~--~~~l~~~sG~~al~~~l~l---l~~Gd~Vl~~~~~y~~~~~~~~~~~~---------~  108 (378)
T TIGR01329        43 RSGNPTRTALESLLAKLDKA--DRAFAFSSGMAALDVITRL---LNNGDEIIAGDDLYGGTDRLLTQVVP---------R  108 (378)
T ss_pred             CCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHH---hCCCCEEEEcCCCchHHHHHHHHHHH---------H
Confidence            34567788999999998865  5678889999999877652   24567888888777654221100000         0


Q ss_pred             CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCc
Q 011777          214 GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEV  293 (477)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv  293 (477)
                      .|+.....+.      . |    .++++++++    +++++|++|.+.++.|.+.+    +++|.++|++||+++|+|++
T Consensus       109 ~G~~v~~vd~------~-d----~~~le~~i~----~~tklv~le~psnptg~v~d----l~~I~~la~~~g~~vivD~a  169 (378)
T TIGR01329       109 SGVVVVHVDT------T-D----LDKVKAALG----PKTKLVLLESPTNPLQKIVD----IRKISEMAHAQNALVVVDNT  169 (378)
T ss_pred             cCcEEEEeCC------C-C----HHHHHHhcC----cCceEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECC
Confidence            1222222211      0 1    467887775    46789999988888887776    99999999999999999999


Q ss_pred             ccCccCCCCCCccccccCCCccee--eecccccC--ccceEEEEeC-HHHHHhhcccccccCCCCcHHHHHHHHHHHHhh
Q 011777          294 QTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN--GLPLGAVVTT-PEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVI  368 (477)
Q Consensus       294 ~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~--G~pig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l  368 (477)
                      |.. +... ..  +   +...|++  +++|.++|  +...|+++++ +++.+.+...........++..+...+..++.+
T Consensus       170 ~~~-~~~~-~~--l---~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~tl  242 (378)
T TIGR01329       170 MMS-PLLC-NP--L---ELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKTL  242 (378)
T ss_pred             Ccc-cccC-Ch--h---hcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCCH
Confidence            742 1111 11  1   2234666  46799986  3668998885 455555554322122334565554433333322


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhCCCce------------------eeeccceeEEEEEeeCCCCCCccHHHHHHHH
Q 011777          369 DKERRQAHCADVGSHLLGRLRTLQERHDIIG------------------DVRGRGLMVGMELVTDRKEKTPAKAETAVLF  430 (477)
Q Consensus       369 ~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~------------------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~  430 (477)
                        +...++..++...+.+.|++    ++.+.                  ...+.|.++.|++ .+       .....++.
T Consensus       243 --~~R~e~~~~na~~la~~L~~----~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~-~~-------~~~~~~~~  308 (378)
T TIGR01329       243 --AIRIEKQQENARAIAMFLST----HPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFET-GS-------VALSKRLV  308 (378)
T ss_pred             --HHHHHHHHHHHHHHHHHHHh----CCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEE-CC-------HHHHHHHH
Confidence              22344445555555555542    33211                  1235677888887 21       12245677


Q ss_pred             HHHHHcCceeeccC-------------------------CCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          431 EKLRELGVLVGKGG-------------------------LHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       431 ~~l~~~Gv~v~~~~-------------------------~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +.|...++.+..|+                         ...+.+||+..+    ||.+.+++-|++++++
T Consensus       309 ~~L~~~~i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~~  375 (378)
T TIGR01329       309 EATKLFSITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGI----EDVDDLISDLDIAFVT  375 (378)
T ss_pred             HhCcCcccccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHHh
Confidence            77755555444331                         123678997765    4556666666666653

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.61  E-value=3.7e-13  Score=147.72  Aligned_cols=350  Identities=15%  Similarity=0.099  Sum_probs=202.2

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHH-HHHHHhhc---cccc---cccCChHHHHHHHHHHhhCCCCCC--EEEEeCChHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNA-IFEQSKLL---QHAT---TIYLHHAIADFAEALASKMPGNLK--VVYFVNSGTE  166 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~A-v~~~l~~~---~~~~---~~~~~~~~~~l~~~La~~~~~~~~--~v~~~~sGse  166 (477)
                      ..|||..+...      ..|.++++ +.+.+...   .|..   .........+.+++++++++.+.+  .|+||+|+|+
T Consensus        35 ~iYLD~Aatt~------~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~  108 (805)
T PLN02724         35 VVYLDHAGATL------YSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATA  108 (805)
T ss_pred             CEeEeCCCCCC------CCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHH
Confidence            58999876543      34444444 44444432   1111   111234577888999999987544  5899999999


Q ss_pred             HHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHH--HHHHHHHHH
Q 011777          167 ANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAAR--YAQDLQDHI  244 (477)
Q Consensus       167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~le~~i  244 (477)
                      |+..+..... ..+++.||+ ....|...............       .+..++.+.....+.+.....  ..+++++.+
T Consensus       109 alnlva~~l~-~~~gd~Iv~-t~~eH~svl~~~~~a~~~G~-------~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~  179 (805)
T PLN02724        109 ALKLVGETFP-WSSESHFCY-TLENHNSVLGIREYALEKGA-------AAIAVDIEEAANQPTNSQGSVVVKSRGLQRRN  179 (805)
T ss_pred             HHHHHHHHCC-CCCCCeEEE-eeccccchHHHHHHHHHcCC-------eEEeccchhccccccccccccccchhhhhhhh
Confidence            9998876432 334556665 45555443322211100000       111221110000000000000  013454443


Q ss_pred             h----c--cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHh--------CcEEEEcCcccCccCCCCCCcccccc
Q 011777          245 D----F--GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKA--------GGVCIADEVQTGFGRTGSHYWGFETQ  310 (477)
Q Consensus       245 ~----~--~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~--------gillI~DEv~~gfgr~G~~~~~~~~~  310 (477)
                      +    .  ...+++.+|.+..+.+..|.+.|    ++.+..+++..        ++++++|.+|+ +|.     ..++..
T Consensus       180 ~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~p----i~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~-~g~-----~piDv~  249 (805)
T PLN02724        180 TSKLQKREDDGEAYNLFAFPSECNFSGAKFP----LDLVKLIKDNQHSNFSKSGRWMVLLDAAKG-CGT-----SPPDLS  249 (805)
T ss_pred             hhhhccccccCCCcceEEEEccccCCCCcCC----HHHHHHHHHhcccccccCcceEEEeehhhh-cCC-----CCCChh
Confidence            1    0  01235678888889999998888    66665444432        36899999997 432     234555


Q ss_pred             CCCcceeeec--ccccCccceEEEEeCHHHHHhhccccccc-C---------C--------------CCcHHHHHHHHHH
Q 011777          311 GVIPDIVTMA--KGIGNGLPLGAVVTTPEIANVMAQKIQFN-T---------F--------------GGNPVCSAGGLAV  364 (477)
Q Consensus       311 gv~pDivt~s--K~lg~G~pig~v~~~~~~~~~~~~~~~~~-t---------~--------------~~~~~~~aaa~a~  364 (477)
                      .+.+|.+++|  |.+|+...+|++++++++.+.+.+...++ +         +              +.|..+.++..++
T Consensus       250 ~~~~Dfl~~S~HK~~GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aa  329 (805)
T PLN02724        250 RYPADFVVVSFYKIFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHG  329 (805)
T ss_pred             hcCCCEEEEecceeccCCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHH
Confidence            5678999887  97765567999999998877665432221 1         0              2456666667777


Q ss_pred             HHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCC--Cc---ee------eeccceeEEEEEeeCCCCCCccHHHHHHHH
Q 011777          365 LRVIDK---ERRQAHCADVGSHLLGRLRTLQERHD--II---GD------VRGRGLMVGMELVTDRKEKTPAKAETAVLF  430 (477)
Q Consensus       365 l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~--~~---~~------v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~  430 (477)
                      ++.+.+   +...++..++.+++.++|.++....+  .+   +.      ...++.++.|.+......    ......+.
T Consensus       330 l~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~----~v~~~~v~  405 (805)
T PLN02724        330 FKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGS----WVGHREVE  405 (805)
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCC----EeCHHHHH
Confidence            777654   55678888888888888887631111  11   11      112456666666432211    01122344


Q ss_pred             HHHHHcCceeeccCC-------------------------------------CCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          431 EKLRELGVLVGKGGL-------------------------------------HGNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       431 ~~l~~~Gv~v~~~~~-------------------------------------~~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      ..+.++||.++.|..                                     ..+.+|+++....|.+|||++++.|++.
T Consensus       406 ~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~  485 (805)
T PLN02724        406 KLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISS  485 (805)
T ss_pred             HHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHH
Confidence            444567888865511                                     1267999999999999999999999986


Q ss_pred             H
Q 011777          474 M  474 (477)
Q Consensus       474 l  474 (477)
                      +
T Consensus       486 ~  486 (805)
T PLN02724        486 F  486 (805)
T ss_pred             h
Confidence            5

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.61  E-value=2.6e-13  Score=136.97  Aligned_cols=308  Identities=16%  Similarity=0.117  Sum_probs=176.2

Q ss_pred             HHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCC
Q 011777          115 PDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGG  194 (477)
Q Consensus       115 p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~  194 (477)
                      ++-.+++.+.+.....    +..+...+|+++++++++.  +.+++++||++|+.++++... ..++++||+..++|.+.
T Consensus        14 ~~e~~~~~~~l~~~~~----~~g~~~~~le~~la~~~g~--~~~v~~~sgt~al~lal~al~-~~~Gd~Viv~~~~~~~~   86 (379)
T PRK11658         14 DEELAAVKEVLRSGWI----TTGPKNQALEQAFCQLTGN--QHAIAVSSATAGMHITLMALG-IGPGDEVITPSLTWVST   86 (379)
T ss_pred             HHHHHHHHHHHHcCCc----cCCHhHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHcC-CCCCCEEEECCCcHHHH
Confidence            5567778777765322    2356788999999999865  568899999999999998552 23567899988888776


Q ss_pred             cccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhH
Q 011777          195 SSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYL  274 (477)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l  274 (477)
                      .......             |...+.++.... .+..|    .+++++.+.    +++++|+  |++. .|...+    +
T Consensus        87 ~~~~~~~-------------G~~~v~vd~~~~-~~~~d----~~~l~~~i~----~~tkav~--~~~~-~G~~~d----~  137 (379)
T PRK11658         87 LNMIVLL-------------GATPVMVDVDRD-TLMVT----PEAIEAAIT----PRTKAII--PVHY-AGAPAD----L  137 (379)
T ss_pred             HHHHHHc-------------CCEEEEEecCCC-cCCcC----HHHHHHhcc----cCCeEEE--EeCC-CCCcCC----H
Confidence            4333221             222222221110 11111    477888775    3566666  3333 455444    8


Q ss_pred             HHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeC-HHHHHhhcccc-cc-
Q 011777          275 KLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTT-PEIANVMAQKI-QF-  348 (477)
Q Consensus       275 ~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~-~~~~~~~~~~~-~~-  348 (477)
                      ++|.++|++||+++|+|++|+ |....| ..  ...+|.  ++.+|+  |.+.+| +.|+++++ +++.+.++... ++ 
T Consensus       138 ~~i~~~a~~~gi~vi~D~a~a~g~~~~~-~~--~g~~g~--~~~Sf~~~K~l~~g-~GG~v~~~~~~~~~~~~~~~~~G~  211 (379)
T PRK11658        138 DAIRAIGERYGIPVIEDAAHAVGTYYKG-RH--IGARGT--AIFSFHAIKNITCA-EGGLVVTDDDELADRLRSLKFHGL  211 (379)
T ss_pred             HHHHHHHHHcCCeEEEECCCccCCeECC-ee--cCCCCC--EEEeCCCCCcCccc-CceEEEECCHHHHHHHHHHHHcCC
Confidence            999999999999999999997 322223 11  122343  667776  777553 55777774 67776554321 11 


Q ss_pred             ----------------------cCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCc--eeee--
Q 011777          349 ----------------------NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDII--GDVR--  402 (477)
Q Consensus       349 ----------------------~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~--~~v~--  402 (477)
                                            ..+.-+.+..+.++..++.+  ++..++-+++.+++.+.|.++    +..  ....  
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l--~~~~~~r~~~a~~~~~~L~~~----~~~~~~~~~~~  285 (379)
T PRK11658        212 GVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKL--EALNARRREIAARYLQALADL----PFQPLSLPAWP  285 (379)
T ss_pred             CcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCC----CCccCcCCCCC
Confidence                                  01112233444444444332  344555566666666666543    211  1111  


Q ss_pred             ccce--eEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC----------------C-------CCCEEEEeCCCC
Q 011777          403 GRGL--MVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG----------------L-------HGNVFRIKPPMC  457 (477)
Q Consensus       403 g~g~--~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------------~-------~~~~iRi~p~~~  457 (477)
                      ....  ++.+.+...     ......+++.+.|.++||-+....                .       ....+.+=....
T Consensus       286 ~~~~~~~~~~~~~~~-----~~~~~r~~~~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~  360 (379)
T PRK11658        286 HQHAWHLFIIRVDEE-----RCGISRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPD  360 (379)
T ss_pred             CceeEEEEEEEECCc-----cccCCHHHHHHHHHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCC
Confidence            1111  122222111     011124678899999998765210                0       112344422344


Q ss_pred             CcHHHHHHHHHHHHHHHh
Q 011777          458 FTKDDADFLVDALDYSMS  475 (477)
Q Consensus       458 ~t~e~i~~~l~~l~~~l~  475 (477)
                      .|++|+++.++.|++++.
T Consensus       361 l~~~~~~~i~~~i~~~~~  378 (379)
T PRK11658        361 MTDADVDRVITALQQIAG  378 (379)
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            789999999999998764

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.61  E-value=6.2e-14  Score=140.28  Aligned_cols=313  Identities=15%  Similarity=0.121  Sum_probs=185.0

Q ss_pred             CCHHHHHHHHHHHhh---ccccccccCChHHHHHHHHHHhhCCCC-CCEEEEe-CChHHHHHHHHHHHHhccCCceEEEE
Q 011777          113 CHPDVLNAIFEQSKL---LQHATTIYLHHAIADFAEALASKMPGN-LKVVYFV-NSGTEANELAMLMARLSTGNLGMIAL  187 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~---~~~~~~~~~~~~~~~l~~~La~~~~~~-~~~v~~~-~sGseA~~~Al~~ar~~~~~~~ii~~  187 (477)
                      -+|+|.+|+..+...   ..|.... ......+..+.|+++++.. ..+|+|+ +|||.|++.++....  .+  +.+.+
T Consensus        14 ~~~~v~~a~~~~~~~~~~~~hr~~~-f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~--~~--~~l~i   88 (361)
T TIGR01366        14 VRLEQLQALTTTAASLFGTSHRQAP-VKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLI--EK--KSLHL   88 (361)
T ss_pred             CCHHHHHHHHhcCccccccCcCChH-HHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcc--cc--cccEE
Confidence            378999998754211   1233322 2466778889999998753 2367775 779999999997442  12  23333


Q ss_pred             ccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCee
Q 011777          188 RNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAV  267 (477)
Q Consensus       188 ~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~  267 (477)
                      ..+.||......+....  +.     ..+..++.+.      +       +.++..+    ..+++.|.+..+.+.+|++
T Consensus        89 ~~G~~~~~~~~~a~~~~--~~-----~~~~~~~~~~------~-------~~~~~~~----~~~~~lV~~~h~et~tG~~  144 (361)
T TIGR01366        89 SFGEFSSKFAKAVKLAP--WL-----GEPIIVTADP------G-------SAPEPQA----DPGVDVIAWAHNETSTGVA  144 (361)
T ss_pred             ecCHHHHHHHHHHHhhh--cc-----CCceEEecCC------C-------CCCCCcc----CCCCCEEEEcccCCcccee
Confidence            34555544333332210  00     0112222111      1       1111111    2478888888888888988


Q ss_pred             eCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCHHHHHhhccc
Q 011777          268 ELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPEIANVMAQK  345 (477)
Q Consensus       268 ~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~~~~~~~~~  345 (477)
                      .|    +++|   ++++|+++|+|.+|+ +|.   ....++  .  .|++++|  |++++--.++.++.++++.+.+...
T Consensus       145 ~p----i~~I---~~~~g~~~iVDavqs-~g~---~~idv~--~--~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~  209 (361)
T TIGR01366       145 VP----VRRP---EGSDDALVVIDATSG-AGG---LPVDIA--E--TDVYYFAPQKNFASDGGLWLAIMSPAALERIEAI  209 (361)
T ss_pred             cc----cccc---cccCCCeEEEEcCcc-ccC---CCCCHH--H--CCEEEEEchhhcCCCCceEEEEECHHHHhhhhcc
Confidence            87    5555   689999999999998 432   222222  2  5888776  9998522366777899877665421


Q ss_pred             c--------------------cccCCCCcHHHHH-HHHHHHHhhchh----hHHHHHHHHHHHHHHHHHHHHHhCCCcee
Q 011777          346 I--------------------QFNTFGGNPVCSA-GGLAVLRVIDKE----RRQAHCADVGSHLLGRLRTLQERHDIIGD  400 (477)
Q Consensus       346 ~--------------------~~~t~~~~~~~~a-aa~a~l~~l~~~----~~~~~~~~~~~~l~~~L~~l~~~~~~~~~  400 (477)
                      .                    ..+|.+.+++... +..++++.+.++    ...++.+++.+++++++.++..-......
T Consensus       210 ~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~  289 (361)
T TIGR01366       210 AASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTD  289 (361)
T ss_pred             cCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC
Confidence            1                    0234444444433 555777777653    33456666677777776665311011111


Q ss_pred             eeccc-eeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC--CCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          401 VRGRG-LMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG--LHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       401 v~g~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      ..... ....+.+. +       +....++.+.|.++||.+.++.  ..++.+|++....+|++||++++++|+++++++
T Consensus       290 ~~~~s~~v~~v~~~-~-------g~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~~  361 (361)
T TIGR01366       290 PGKRSQVVGTIDFV-D-------DIDAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDWVVERL  361 (361)
T ss_pred             hhhcccceEEEECC-C-------ccCHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhhC
Confidence            10011 11223331 1       1234568888889999987652  124689999999999999999999999998765

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.59  E-value=1.1e-12  Score=134.15  Aligned_cols=310  Identities=18%  Similarity=0.109  Sum_probs=177.4

Q ss_pred             HHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHH-------hccCCceEEEEcc
Q 011777          117 VLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR-------LSTGNLGMIALRN  189 (477)
Q Consensus       117 v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar-------~~~~~~~ii~~~~  189 (477)
                      -.+++.+.+......    ..+...+|+++|+++++.  +.+++++||++|+..|++.+.       ...+++.||+..+
T Consensus        46 ~~~a~~~~~~~~~~~----~G~~~~~fe~~lA~~~g~--~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~  119 (438)
T PRK15407         46 ELQNLVDASLDFWLT----TGRFNDAFEKKLAEFLGV--RYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAA  119 (438)
T ss_pred             HHHHHHHHHHhCccc----CChhHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCC
Confidence            344455555543221    234577899999999864  579999999999999998653       2345678999998


Q ss_pred             CccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeC
Q 011777          190 AYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVEL  269 (477)
Q Consensus       190 ~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~  269 (477)
                      +|.+........+             ...+..+... ..++.|    .+++++.+.    .++++|++.+..|.   .  
T Consensus       120 t~~a~~~~v~~~G-------------~~pv~vdvd~-~~~~id----~~~le~~i~----~~tkaVi~~~~~G~---p--  172 (438)
T PRK15407        120 GFPTTVNPIIQNG-------------LVPVFVDVEL-PTYNID----ASLLEAAVS----PKTKAIMIAHTLGN---P--  172 (438)
T ss_pred             CcHHHHHHHHHcC-------------CEEEEEecCC-CcCCcC----HHHHHHHcC----cCCeEEEEeCCCCC---h--
Confidence            9876644433321             1211111110 112222    467777775    46788888875443   2  


Q ss_pred             CchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec----ccccCccceEEEEeCHH-HHHhhcc
Q 011777          270 APGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA----KGIGNGLPLGAVVTTPE-IANVMAQ  344 (477)
Q Consensus       270 ~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pig~v~~~~~-~~~~~~~  344 (477)
                        ..+++|.++|++||++||+|++|+ +|-   .+-+ ...|-.-|+.+||    |.+..|- -|+++++.+ +.+.+..
T Consensus       173 --~dl~~I~~la~~~gi~vIeDaa~a-~G~---~~~g-~~~G~~gd~~~fSf~~~k~~~~ge-GG~l~t~d~~l~~~~~~  244 (438)
T PRK15407        173 --FDLAAVKAFCDKHNLWLIEDNCDA-LGS---TYDG-RMTGTFGDIATLSFYPAHHITMGE-GGAVFTNDPLLKKIIES  244 (438)
T ss_pred             --hhHHHHHHHHHHCCCEEEEECccc-hhh---hcCC-eeeeccCceEEEeCCCCCCccccC-ceEEEECCHHHHHHHHH
Confidence              248999999999999999999997 431   1111 1122233777766    7776432 288888644 4443321


Q ss_pred             cc---------------------------------------cccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 011777          345 KI---------------------------------------QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLL  385 (477)
Q Consensus       345 ~~---------------------------------------~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~  385 (477)
                      ..                                       .+..+.-+.+.++.++.-|+.+  ++..++-+++.+++.
T Consensus       245 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l--~~~~~~R~~~a~~y~  322 (438)
T PRK15407        245 FRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKL--PGFIEARKANFAYLK  322 (438)
T ss_pred             HHHhCcccccccccccccccccccccccccccccccccccccccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence            10                                       0112233567777777777755  445566666667777


Q ss_pred             HHHHHHHHhCCCceeeecc-ceeE--EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-----C------------
Q 011777          386 GRLRTLQERHDIIGDVRGR-GLMV--GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-----L------------  445 (477)
Q Consensus       386 ~~L~~l~~~~~~~~~v~g~-g~~~--~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~------------  445 (477)
                      +.|..+...........+. ..++  .+.+...  .    ....+++.+.|.++||-.....     .            
T Consensus       323 ~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~----~~~Rd~l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~  396 (438)
T PRK15407        323 EGLASLEDFLILPEATPNSDPSWFGFPITVKED--A----GFTRVELVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVV  396 (438)
T ss_pred             HHhccCCCccccCcCCCCCeeEEEEEEEEECCc--C----CCCHHHHHHHHHHCCCCccccCCCccccChhhhhcCCCCC
Confidence            7665431000011111111 1222  2222111  0    1124678999999999654210     0            


Q ss_pred             ---------CCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          446 ---------HGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       446 ---------~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                               ....+-+=.....|++|++..++.|+++++
T Consensus       397 ~~~P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~i~~~~~  435 (438)
T PRK15407        397 GELTNTDRIMNDTFWIGVYPGLTEEMLDYVIEKIEEFFG  435 (438)
T ss_pred             CCChHHHHHHhCeEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence                     011233322334589999999999998874

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.59  E-value=5.5e-13  Score=136.17  Aligned_cols=163  Identities=20%  Similarity=0.199  Sum_probs=113.2

Q ss_pred             cccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCC
Q 011777          133 TIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP  212 (477)
Q Consensus       133 ~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  212 (477)
                      .+..++...+|+++|+++.+.  +..++++||++|+.++++...  .++++||+....|++.........         .
T Consensus        58 ~r~~~p~~~~le~~lA~l~g~--~~al~~~SG~~Ai~~al~all--~pGd~VIv~~~~y~~t~~~~~~~~---------~  124 (427)
T PRK05994         58 TRITNPTNAVLEERVAALEGG--TAALAVASGHAAQFLVFHTLL--QPGDEFIAARKLYGGSINQFGHAF---------K  124 (427)
T ss_pred             ECCCCccHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHHHh--CCCCEEEEecCcchhHHHHHHHHH---------H
Confidence            345567788999999999865  458899999999999998663  356889999899987532211100         0


Q ss_pred             CCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcC
Q 011777          213 QGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADE  292 (477)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  292 (477)
                      ..|+.....+.      . |    .++++++++    +++++|++|.+++++|.+.+    +++|.++|++||+++|+|+
T Consensus       125 ~~G~~v~~vd~------~-d----~~~l~~ai~----~~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~  185 (427)
T PRK05994        125 SFGWQVRWADA------D-D----PASFERAIT----PRTKAIFIESIANPGGTVTD----IAAIAEVAHRAGLPLIVDN  185 (427)
T ss_pred             hcCcEEEEECC------C-C----HHHHHHhcC----cCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEEC
Confidence            11222222211      0 1    467887775    46889999999899998776    8999999999999999999


Q ss_pred             cccCccCCCCCCccccccCCCcceee--ecccccC-ccceEEEEe
Q 011777          293 VQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGN-GLPLGAVVT  334 (477)
Q Consensus       293 v~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G~pig~v~~  334 (477)
                      +|+.    +   +........+|+++  ++|.+++ |-.+|.++.
T Consensus       186 a~a~----~---~~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~  223 (427)
T PRK05994        186 TLAS----P---YLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIV  223 (427)
T ss_pred             Cccc----c---ccCCccccCCcEEEEcCccccCCCCCcEEEEEE
Confidence            9862    2   11222345677775  6799986 556665554

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.59  E-value=2.3e-13  Score=122.71  Aligned_cols=297  Identities=15%  Similarity=0.206  Sum_probs=179.7

Q ss_pred             CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCC
Q 011777          136 LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGE  215 (477)
Q Consensus       136 ~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~  215 (477)
                      +.+--.++...+++--|-..+.++...|..|.++..|+... .+|+++|+.+.++|.-++..+.-.           ..+
T Consensus        67 ~d~rnk~ls~a~~~dkpLt~dnic~GvGsDE~ID~iiR~~c-~PGkeKIl~cPPtysMY~v~A~iN-----------d~e  134 (375)
T KOG0633|consen   67 PDPRNKRLSDALAQDKPLTSDNICVGVGSDELIDLIIRCVC-DPGKEKILDCPPTYSMYVVDAAIN-----------DAE  134 (375)
T ss_pred             CCcccchhhhhcccCCCCCccceEEecCcHHHHHHHHhhee-cCCccceeecCCcceeEEEEeecC-----------Cce
Confidence            33334455566665555566889999999999999998664 478899999999985443322111           113


Q ss_pred             eeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc
Q 011777          216 IHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT  295 (477)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~  295 (477)
                      +..++...    .|+-+    .+.+.+.++.  ...++++.+....+++|... ..+.+.+|.+.-+  ++++++||+|-
T Consensus       135 Vvkvpl~p----dF~ln----vdai~evl~~--ds~iK~~F~tSPgNPtg~~i-k~~di~KiLe~p~--nglVVvDEAYi  201 (375)
T KOG0633|consen  135 VVKVPLNP----DFSLN----VDAIAEVLEL--DSKIKCIFLTSPGNPTGSII-KEDDILKILEMPD--NGLVVVDEAYI  201 (375)
T ss_pred             EEEecCCC----Ccccc----HHHHHHHHhc--cccceEEEEcCCCCCCcccc-cHHHHHHHHhCCC--CcEEEEeeeeE
Confidence            33332211    23322    3566666652  23566666665556666444 5555666655433  68999999999


Q ss_pred             CccCCCCCCccccccCCCccee---eeccccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhh--c
Q 011777          296 GFGRTGSHYWGFETQGVIPDIV---TMAKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVI--D  369 (477)
Q Consensus       296 gfgr~G~~~~~~~~~gv~pDiv---t~sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l--~  369 (477)
                      .|.-.++.   ..+-.-.|+++   ||||++| +|+|+|+...+.++++.+....  ..|+-+..+..+|++++.--  +
T Consensus       202 dFsg~~S~---~~lV~kYpNLivlqTlSKsfGLAGiRvG~~~~~~~ia~iln~~K--aPYNiS~~~s~~AL~Als~~n~k  276 (375)
T KOG0633|consen  202 DFSGVESR---MKLVKKYPNLIVLQTLSKSFGLAGIRVGYGAFPLSIAEILNRAK--APYNISVAGSVAALAALSDSNGK  276 (375)
T ss_pred             eecccccc---chHhHhCCceeehhhhhhhcCcceeEeecccccHHHHHHHHhcc--CCccccchhHHHHHHhcCcccch
Confidence            88433322   22223356666   6899999 6999999999999988877544  45555666777777777521  1


Q ss_pred             h-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeec--cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC
Q 011777          370 K-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRG--RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH  446 (477)
Q Consensus       370 ~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~  446 (477)
                      . ++..+-+.+.+.+|...|.    ..+...+..|  ...|+.+++....     .......+.+.+.+.||.++--+..
T Consensus       277 kme~~rdaiv~er~RL~keLt----~v~~~~~~~gg~daNFiLi~v~~~~-----n~~akkly~q~at~~gVvVRfrgse  347 (375)
T KOG0633|consen  277 KMEDVRDAIVRERERLFKELT----EVPFLNDYPGGSDANFILIEVTGGD-----NGMAKKLYKQDATKMGVVVRFRGSE  347 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh----cCccccCCCCcccccEEEEEEcCCC-----cHHHHHHHHHHHHhcceEEEEcCCc
Confidence            1 1222222222333333333    3344443332  2456666664321     1122233455666789999765432


Q ss_pred             ---CCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          447 ---GNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       447 ---~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                         .+++|+   .+.|+|+.+-+++.|++++
T Consensus       348 ~~c~G~lRi---tvGt~EentvL~k~~K~~l  375 (375)
T KOG0633|consen  348 EGCKGYLRI---TVGTPEENTVLMKCLKQFL  375 (375)
T ss_pred             cccceeEEE---EcCCcccchHHHHHHHhhC
Confidence               378999   5678899999999888753

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.59  E-value=4.6e-13  Score=134.28  Aligned_cols=237  Identities=11%  Similarity=0.019  Sum_probs=142.9

Q ss_pred             ccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCC
Q 011777          132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI  211 (477)
Q Consensus       132 ~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  211 (477)
                      +++..+|....|+++|+.+...  +..++++||++|+..++...  ..++++||+.++.|+++.........        
T Consensus        58 YsR~gnPt~~~Le~~la~le~~--~~~v~~sSG~aAi~~~l~al--l~~GD~Vlv~~~~Y~~~~~l~~~~l~--------  125 (395)
T PRK05967         58 YGTRGTPTTDALCKAIDALEGS--AGTILVPSGLAAVTVPFLGF--LSPGDHALIVDSVYYPTRHFCDTMLK--------  125 (395)
T ss_pred             cCCCCChHHHHHHHHHHHHhCC--CCEEEECcHHHHHHHHHHHh--cCCCCEEEEccCCcHHHHHHHHHHHH--------
Confidence            4456788899999999987643  34567777999999988654  23678899999999876432111100        


Q ss_pred             CCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777          212 PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD  291 (477)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  291 (477)
                       ..|+....++.      . +    .+.++++++    +++++|++|.+.|+.+.+.+    +++|.++|+++|+++|+|
T Consensus       126 -~~Gi~v~~vd~------~-~----~e~l~~al~----~~TklV~lesPsNP~l~v~d----l~~I~~la~~~g~~vvVD  185 (395)
T PRK05967        126 -RLGVEVEYYDP------E-I----GAGIAKLMR----PNTKVVHTEAPGSNTFEMQD----IPAIAEAAHRHGAIVMMD  185 (395)
T ss_pred             -hcCeEEEEeCC------C-C----HHHHHHhcC----cCceEEEEECCCCCCCcHHH----HHHHHHHHHHhCCEEEEE
Confidence             01222211110      0 1    256777775    46889999977776665554    999999999999999999


Q ss_pred             CcccCccCCCCCCccccccCCCccee--eecccccC-c-cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHh
Q 011777          292 EVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-G-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRV  367 (477)
Q Consensus       292 Ev~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~  367 (477)
                      +++....       .+.-.....|++  +.+|.++| | .-.|+++.+++..+.+........-..+|..+...+..|+.
T Consensus       186 ~t~a~p~-------~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~~~G~~~~p~da~l~~rgl~T  258 (395)
T PRK05967        186 NTWATPL-------YFRPLDFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHGTLGLCAGPDDTYQILRGLRT  258 (395)
T ss_pred             CCccCce-------ecChhHcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHHHcCCCCCHHHHHHHHcCccc
Confidence            9987321       112122234555  57899997 3 77788888887666554221111122456655544444433


Q ss_pred             hchhhHHHHHHHHHHHHHHHHHHHHHhCCCce------------------eeeccceeEEEEEe
Q 011777          368 IDKERRQAHCADVGSHLLGRLRTLQERHDIIG------------------DVRGRGLMVGMELV  413 (477)
Q Consensus       368 l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~------------------~v~g~g~~~~i~~~  413 (477)
                      +.  -..++..++...+.+.|++    +|.+.                  ...|.|.++.|++.
T Consensus       259 l~--lR~~~~~~na~~lA~~L~~----hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~  316 (395)
T PRK05967        259 MG--IRLEHHRKSALEIARWLEG----RPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLA  316 (395)
T ss_pred             HH--HHHHHHHHHHHHHHHHHHh----CCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEc
Confidence            21  1233334444444444443    33221                  12356788888884

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.58  E-value=2.7e-13  Score=137.00  Aligned_cols=288  Identities=15%  Similarity=0.103  Sum_probs=170.1

Q ss_pred             cccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCC
Q 011777          133 TIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP  212 (477)
Q Consensus       133 ~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  212 (477)
                      .+..++...+|+++|+++.+..  ..+.++||+.|+..++. .  ..++++||+.++.|++..........         
T Consensus        49 ~r~~~p~~~~le~~lA~l~g~~--~~v~~~sG~~ai~~~l~-~--l~~Gd~Vlv~~~~y~~~~~~~~~~~~---------  114 (390)
T PRK08064         49 SRSGNPTREALEDIIAELEGGT--KGFAFASGMAAISTAFL-L--LSKGDHVLISEDVYGGTYRMITEVLS---------  114 (390)
T ss_pred             cCCCChhHHHHHHHHHHHhCCC--CeEEECCHHHHHHHHHH-H--hCCCCEEEEccCccchHHHHHHHHHH---------
Confidence            3455788899999999998654  35667999999988885 2  23567899998888765432111100         


Q ss_pred             CCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcC
Q 011777          213 QGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADE  292 (477)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  292 (477)
                      ..|+....++.      . |    .+++++.++    +++++|++|..+|+.|.+.+    +++|.++|+++|+++|+|+
T Consensus       115 ~~G~~v~~v~~------~-d----~~~l~~~l~----~~tklV~l~~p~NptG~~~d----l~~I~~la~~~g~~vvvD~  175 (390)
T PRK08064        115 RFGIEHTFVDM------T-N----LEEVAQNIK----PNTKLFYVETPSNPLLKVTD----IRGVVKLAKAIGCLTFVDN  175 (390)
T ss_pred             HcCCEEEEECC------C-C----HHHHHHhcC----CCceEEEEECCCCCCcEecc----HHHHHHHHHHcCCEEEEEC
Confidence            01222221111      0 1    467777665    46788999988888887776    8999999999999999999


Q ss_pred             cccCccCCCCCCccccccCCCccee--eecccccC--ccceEEEEeC-HHHHHhhcccccccCCCCcHHHHHHHHHHHHh
Q 011777          293 VQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN--GLPLGAVVTT-PEIANVMAQKIQFNTFGGNPVCSAGGLAVLRV  367 (477)
Q Consensus       293 v~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~--G~pig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~  367 (477)
                      +|..+.. . .  .. .+|  .|++  +++|.++|  |.-.|+++++ +++.+.+...........+|..+...+..++.
T Consensus       176 a~~~~~~-~-~--~~-~~g--~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l~~~gl~t  248 (390)
T PRK08064        176 TFLTPLL-Q-K--PL-DLG--ADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLVLRGLKT  248 (390)
T ss_pred             CCCcccc-c-C--ch-hhC--CcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCc
Confidence            9864311 1 1  11 123  4666  46799975  3445766664 67877776544323333445444443333332


Q ss_pred             hchhhHHHHHHHHHHHHHHHHHHHHH----hCCCce----------eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHH
Q 011777          368 IDKERRQAHCADVGSHLLGRLRTLQE----RHDIIG----------DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKL  433 (477)
Q Consensus       368 l~~~~~~~~~~~~~~~l~~~L~~l~~----~~~~~~----------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l  433 (477)
                      +  ....++..++...+.+.|++...    .||...          ...+.|.++.+++..        ......+.   
T Consensus       249 l--~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~--------~~~~~~f~---  315 (390)
T PRK08064        249 L--HVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQS--------EEAVRQFV---  315 (390)
T ss_pred             H--HHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECC--------HHHHHHHH---
Confidence            2  12234444444455555543210    011111          234677788888831        11222333   


Q ss_pred             HHcCce---eecc-------------------------CCCCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          434 RELGVL---VGKG-------------------------GLHGNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       434 ~~~Gv~---v~~~-------------------------~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      ...++.   +..|                         |...+.+|++..+..+++.|+.+.++|+++
T Consensus       316 ~~l~l~~~~~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~~  383 (390)
T PRK08064        316 SHVKLPVFAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSYV  383 (390)
T ss_pred             HhCCcceEcccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhc
Confidence            333441   1111                         112468999999998888888888888764

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.58  E-value=1.7e-13  Score=137.80  Aligned_cols=174  Identities=14%  Similarity=0.057  Sum_probs=114.7

Q ss_pred             cccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCC
Q 011777          131 ATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYP  210 (477)
Q Consensus       131 ~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  210 (477)
                      ...++.++...+|+++++++.+.  +..++++||+.|+.+++.+   ..++++||+.++.|++..........       
T Consensus        43 ~y~r~~~p~~~~Le~~la~l~g~--~~al~~~SG~~Al~~~l~~---l~pGd~Vi~~~~~y~~t~~~~~~~~~-------  110 (380)
T PRK06176         43 EYSRSGNPTRFALEELIADLEGG--VKGFAFASGLAGIHAVFSL---FQSGDHVLLGDDVYGGTFRLFDKVLV-------  110 (380)
T ss_pred             cccCCCChhHHHHHHHHHHHhCC--CCEEEECCHHHHHHHHHHH---cCCCCEEEEcCCChhHHHHHHHHHHH-------
Confidence            34566788899999999999864  4567889999999876642   24568899988888665322111100       


Q ss_pred             CCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEE
Q 011777          211 IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA  290 (477)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  290 (477)
                        ..++....++.      . |    .++++++++    +++++|++|..+|+.|.+.+    +++|.++|++||+++|+
T Consensus       111 --~~gi~v~~vd~------~-d----~e~l~~ai~----~~t~lV~lesP~Nptg~~~d----i~~I~~la~~~gi~viv  169 (380)
T PRK06176        111 --KNGLSCTIIDT------S-D----LSQIKKAIK----PNTKALYLETPSNPLLKITD----LAQCASVAKDHGLLTIV  169 (380)
T ss_pred             --hcCeEEEEcCC------C-C----HHHHHHhcC----cCceEEEEECCCCCCceecC----HHHHHHHHHHcCCEEEE
Confidence              01222222111      0 1    467777765    46789999888888887776    89999999999999999


Q ss_pred             cCcccCccCCCCCCccccccCCCcceee--ecccccC-c-cceEEEEeC-HHHHHhhcc
Q 011777          291 DEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGN-G-LPLGAVVTT-PEIANVMAQ  344 (477)
Q Consensus       291 DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pig~v~~~-~~~~~~~~~  344 (477)
                      |++|+... .+ ..     .+...|+++  ++|.++| | .-.|+++++ +++.+.+..
T Consensus       170 D~t~a~~~-~~-~p-----~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~  221 (380)
T PRK06176        170 DNTFATPY-YQ-NP-----LLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAF  221 (380)
T ss_pred             ECCccccc-cC-Cc-----cccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHH
Confidence            99987421 12 11     133457765  5699986 4 345667774 556655543

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.58  E-value=2.6e-12  Score=129.89  Aligned_cols=313  Identities=18%  Similarity=0.121  Sum_probs=179.0

Q ss_pred             HHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCC
Q 011777          115 PDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGG  194 (477)
Q Consensus       115 p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~  194 (477)
                      ++-.+++.+.+.....    +..+...++++.++++++.  +..++++||++|+..+++... ..+++.||+..++|++.
T Consensus        10 ~~~~~~v~~~~~~~~~----~~g~~~~~le~~la~~~g~--~~~v~~~sgt~al~~~l~al~-~~~Gd~Viv~~~~~~~~   82 (380)
T TIGR03588        10 QDDIDAVVEVLKSDFL----TQGPTVPAFEEALAEYVGA--KYAVAFNSATSALHIACLALG-VGPGDRVWTTPITFVAT   82 (380)
T ss_pred             HHHHHHHHHHHhcCCc----cCChhHHHHHHHHHHHHCC--CeEEEEcCHHHHHHHHHHHcC-CCCCCEEEeCCcchHHH
Confidence            4557777777765322    2245578899999999865  456778899999999998552 23567899988888765


Q ss_pred             cccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhH
Q 011777          195 SSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYL  274 (477)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l  274 (477)
                      .......             |...+.++... ..+..|    .+++++.++.....++++|++..   ..|...+    +
T Consensus        83 ~~~~~~~-------------G~~~~~~~~~~-~~~~~d----~~~l~~~i~~~~~~~t~~v~~~~---~~G~~~~----~  137 (380)
T TIGR03588        83 ANCALYC-------------GAKVDFVDIDP-DTGNID----EDALEKKLAAAKGKLPKAIVPVD---FAGKSVD----M  137 (380)
T ss_pred             HHHHHHc-------------CCEEEEEecCC-CcCCcC----HHHHHHHhhcccCCCceEEEEeC---CCCccCC----H
Confidence            4332221             22222211100 011111    47788877632123566666432   2454444    8


Q ss_pred             HHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCC--Ccceeeec----ccccCccceEEEEe-CHHHHHhhccccc
Q 011777          275 KLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV--IPDIVTMA----KGIGNGLPLGAVVT-TPEIANVMAQKIQ  347 (477)
Q Consensus       275 ~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv--~pDivt~s----K~lg~G~pig~v~~-~~~~~~~~~~~~~  347 (477)
                      ++|.++|++||+++|+|++|+ +|.   . +.-...|.  .-|+.++|    |.++.| .-|+++. ++++.+.++....
T Consensus       138 ~~i~~l~~~~~~~lI~D~a~a-~g~---~-~~~~~~g~~~~~d~~~~S~~~~K~~~~~-~GG~v~~~~~~~~~~~~~~~~  211 (380)
T TIGR03588       138 QAIAALAKKHGLKIIEDASHA-LGA---E-YGGKPVGNCRYADATVFSFHPVKIITTA-EGGAVTTNDEELAERMRLLRS  211 (380)
T ss_pred             HHHHHHHHHcCCEEEEECCCc-ccC---c-cCCEeCCCccccceEEEecCCCCccccc-CceEEEECCHHHHHHHHHHHH
Confidence            999999999999999999998 321   1 11112233  34777766    888754 3366666 4666665532110


Q ss_pred             -------------------------ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeee
Q 011777          348 -------------------------FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR  402 (477)
Q Consensus       348 -------------------------~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~  402 (477)
                                               +..+.-+.+..+.+++.|+.+  +...++-+++.+++.+.|..+. .........
T Consensus       212 ~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l--~~~~~~r~~~~~~~~~~L~~~~-~~~~~~~~~  288 (380)
T TIGR03588       212 HGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKL--DRFVAKRREIAARYDRLLKDLP-YFTPLTIPL  288 (380)
T ss_pred             CCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCC-CccCCCCCC
Confidence                                     001122345555555556543  4456666777777777776542 111011111


Q ss_pred             cc--c-eeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC----------------C-------CCCEEEEeCCC
Q 011777          403 GR--G-LMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG----------------L-------HGNVFRIKPPM  456 (477)
Q Consensus       403 g~--g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------------~-------~~~~iRi~p~~  456 (477)
                      +.  . .++.+.+...      .....+++.+.|.++||.+....                .       ..+.+++-...
T Consensus       289 ~~~~~~~~~~i~~~~~------~~~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~  362 (380)
T TIGR03588       289 GSKSAWHLYPILLDQE------FGCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHP  362 (380)
T ss_pred             CCEeEEEEEEEEECCc------CCCCHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCC
Confidence            11  1 1222223110      01124678889999999775220                0       01457775566


Q ss_pred             CCcHHHHHHHHHHHHHHH
Q 011777          457 CFTKDDADFLVDALDYSM  474 (477)
Q Consensus       457 ~~t~e~i~~~l~~l~~~l  474 (477)
                      ..|++|++..++.|++++
T Consensus       363 ~l~~~dv~~i~~~l~~~~  380 (380)
T TIGR03588       363 ALTLEQQQRVVETLRKVL  380 (380)
T ss_pred             CCCHHHHHHHHHHHHHhC
Confidence            679999999999998764

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.58  E-value=8.5e-13  Score=134.61  Aligned_cols=164  Identities=21%  Similarity=0.192  Sum_probs=112.8

Q ss_pred             ccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCC
Q 011777          132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI  211 (477)
Q Consensus       132 ~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  211 (477)
                      +.+..++....|++.|+++.+.  +..++++||++|+..++....  .++++|++..+.|++..........        
T Consensus        58 y~r~~~p~~~~Le~~lA~leg~--~~al~~~sG~~Ai~~al~~ll--~~GD~Vlv~~~~y~~t~~~~~~~~~--------  125 (431)
T PRK08248         58 YTRIMNPTTDVFEKRIAALEGG--IGALAVSSGQAAITYSILNIA--SAGDEIVSSSSLYGGTYNLFAHTLP--------  125 (431)
T ss_pred             eECCCCchHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEEccCchhhHHHHHHHHHH--------
Confidence            3456678899999999999864  578899999999999987542  3567898888888765322111100        


Q ss_pred             CCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777          212 PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD  291 (477)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  291 (477)
                       ..|+..+.++.      . |    .++++++++    +++++|+++.++++.|.+.+    +++|.++|+++|+++|+|
T Consensus       126 -~~Gv~v~~vd~------~-d----~e~l~~ai~----~~tklV~l~sp~NPtG~v~d----i~~I~~la~~~gi~vIvD  185 (431)
T PRK08248        126 -KLGITVKFVDP------S-D----PENFEAAIT----DKTKALFAETIGNPKGDVLD----IEAVAAIAHEHGIPLIVD  185 (431)
T ss_pred             -hCCEEEEEECC------C-C----HHHHHHhcC----CCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEe
Confidence             01333322221      0 1    477887775    36788888888888887776    899999999999999999


Q ss_pred             CcccCccCCCCCCccccccCCCccee--eecccccC-ccceEEEEe
Q 011777          292 EVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-GLPLGAVVT  334 (477)
Q Consensus       292 Ev~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pig~v~~  334 (477)
                      +++.. +... .  ..   ....|++  +++|.+++ |.++|++++
T Consensus       186 ~t~a~-~~~~-~--pl---~~gaDivv~S~tK~lgg~g~~~Gg~v~  224 (431)
T PRK08248        186 NTFAS-PYLL-R--PI---EHGADIVVHSATKFIGGHGTSIGGVIV  224 (431)
T ss_pred             CCCCc-cccC-C--hh---HcCCCEEEEcCccccCCCCCceEEEEE
Confidence            99751 1111 1  11   2335665  46799997 778887766

>PRK05939 hypothetical protein; Provisional

Probab=99.57  E-value=9.1e-13  Score=133.18  Aligned_cols=166  Identities=18%  Similarity=0.152  Sum_probs=112.5

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +...++.++...+|+++|+++.+.  +..+.++||+.|+..++....  .++++||+.+..|++.......+..      
T Consensus        39 ~~Y~r~g~p~~~~lE~~la~leg~--~~~v~~ssG~~Ai~~~l~all--~~Gd~Vv~~~~~y~~t~~~~~~l~~------  108 (397)
T PRK05939         39 FTYARQGTPTTAALEAKITKMEGG--VGTVCFATGMAAIAAVFLTLL--RAGDHLVSSQFLFGNTNSLFGTLRG------  108 (397)
T ss_pred             CCcCCCCCHHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHHc--CCCCEEEECCCccccHHHHHHHHHh------
Confidence            334455678899999999999865  456788889999999887552  3567888887777554221111100      


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                          .|+....++.      . |    .++++++++    +++++|++|.++++.|.+.+    +++|.++|++||+++|
T Consensus       109 ----~G~~v~~v~~------~-d----~e~l~~~l~----~~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~li  165 (397)
T PRK05939        109 ----LGVEVTMVDA------T-D----VQNVAAAIR----PNTRMVFVETIANPGTQVAD----LAGIGALCRERGLLYV  165 (397)
T ss_pred             ----cCCEEEEECC------C-C----HHHHHHhCC----CCCeEEEEECCCCCCCCHHh----HHHHHHHHHHcCCEEE
Confidence                1222222111      0 1    477888775    46789999998888887765    9999999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCccee--eecccccC-ccceEEEEeC
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-GLPLGAVVTT  335 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pig~v~~~  335 (477)
                      +|++|+.    + ..  ++......|++  +++|.++| |..+|+++..
T Consensus       166 vD~t~a~----~-~~--~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~  207 (397)
T PRK05939        166 VDNTMTS----P-WL--FRPKDVGASLVINSLSKYIAGHGNALGGAVTD  207 (397)
T ss_pred             EECCccc----c-cc--cCccccCCEEEEecCeecccCCCCeEEEEEec
Confidence            9999852    1 11  12112234555  68899997 8888887764

>PLN02509 cystathionine beta-lyase

Probab=99.55  E-value=1.9e-12  Score=132.42  Aligned_cols=215  Identities=12%  Similarity=0.065  Sum_probs=134.4

Q ss_pred             ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCC
Q 011777          134 IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ  213 (477)
Q Consensus       134 ~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~  213 (477)
                      ++.++...+++++++++.+.  +.+++++||+.|+.+++.+   ..+++.||+.++.|++.........         ..
T Consensus       129 r~gnpt~~aLE~~lA~leg~--e~ai~~~SG~aAi~~il~l---l~~GD~VI~~~~~y~~t~~ll~~~l---------~~  194 (464)
T PLN02509        129 RSGNPTRDALESLLAKLDKA--DRAFCFTSGMAALSAVTHL---IKNGEEIVAGDDVYGGSDRLLSQVV---------PR  194 (464)
T ss_pred             CCCCHHHHHHHHHHHHHhCC--CEEEEeCcHHHHHHHHHHH---hCCCCEEEEcCCchhhHHHHHHHHH---------HH
Confidence            34567899999999998753  5778889999988655532   3466789998888876532111100         00


Q ss_pred             CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCc
Q 011777          214 GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEV  293 (477)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv  293 (477)
                      .|+....++.      . |    .+++++.+.    +++++|++|.+.++.|.+.+    +++|.++|++||+++|+||+
T Consensus       195 ~G~~v~~vd~------~-d----~e~l~~ai~----~~TklV~lesPsNPtG~i~D----l~~I~~lAk~~g~~lIVD~A  255 (464)
T PLN02509        195 SGVVVKRVNT------T-N----LDEVAAAIG----PQTKLVWLESPTNPRQQISD----IRKIAEMAHAQGALVLVDNS  255 (464)
T ss_pred             CCeEEEEeCC------C-C----HHHHHHhCC----cCCeEEEEECCCCCCCCHHH----HHHHHHHHHHcCCEEEEECC
Confidence            1222222111      1 1    467777765    46788999988888887655    99999999999999999999


Q ss_pred             ccCccCCCCCCccccccCCCccee--eecccccC-c-cceEEEEeC-HHHHHhhcccccccCCCCcHHHHHHHHHHHHhh
Q 011777          294 QTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-G-LPLGAVVTT-PEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVI  368 (477)
Q Consensus       294 ~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l  368 (477)
                      |. .+..+ ..     .+...|++  +++|.++| | .-.|+++++ +++.+.+...........+|..++.++..|+.+
T Consensus       256 ~a-~~~~~-~p-----l~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~lr~L~tL  328 (464)
T PLN02509        256 IM-SPVLS-RP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTM  328 (464)
T ss_pred             cc-ccccC-Ch-----hhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHHHhhhhhH
Confidence            75 22222 11     12345766  46799986 3 445777764 444443332111111224677777777777765


Q ss_pred             chhhHHHHHHHHHHHHHHHHHH
Q 011777          369 DKERRQAHCADVGSHLLGRLRT  390 (477)
Q Consensus       369 ~~~~~~~~~~~~~~~l~~~L~~  390 (477)
                      .  ...++..++.+++.+.|++
T Consensus       329 ~--~R~~r~~~nA~~la~~L~~  348 (464)
T PLN02509        329 A--LRIEKQQENARKIAMYLSS  348 (464)
T ss_pred             H--HHHHHHHHHHHHHHHHHhc
Confidence            2  3455566666666666653

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.55  E-value=2.2e-12  Score=130.61  Aligned_cols=306  Identities=14%  Similarity=0.065  Sum_probs=175.9

Q ss_pred             hHHHHHHHHHHhhCCCC-CCEEEEeCChH-HHHHHHHHHHHhcc-CCceEEEEccCccCCcccccccccCCCCCCCCCCC
Q 011777          138 HAIADFAEALASKMPGN-LKVVYFVNSGT-EANELAMLMARLST-GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQG  214 (477)
Q Consensus       138 ~~~~~l~~~La~~~~~~-~~~v~~~~sGs-eA~~~Al~~ar~~~-~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~  214 (477)
                      ....++.++++++++.+ .+..+++++|| .++.+++..++... +.+.||+...+ |-.+..++...+.          
T Consensus       105 ~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~t-h~S~~kAi~~~G~----------  173 (444)
T TIGR03531       105 KLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRID-QKSCIKAISTAGF----------  173 (444)
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcC-hHHHHHHHHHcCC----------
Confidence            45567778888887653 24789999999 78888888776432 34567777665 4444433333321          


Q ss_pred             CeeeecCCC-CcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCc
Q 011777          215 EIHHVVNPD-PYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEV  293 (477)
Q Consensus       215 ~~~~~~~~~-~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv  293 (477)
                        ..+.++. .....+.-|    .++|+++|+...++.+.+|+..|..+..|...+    +++|.++|++||+++|+|++
T Consensus       174 --~pv~Vd~~~d~~~~~iD----~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~dd----L~eIa~la~k~gI~lIvDaA  243 (444)
T TIGR03531       174 --EPRVIETVLDGDELTTD----VEDIERAIEEIGPDNILCVLSTTSCFAPRSPDD----IEEIAKICANYDIPHIVNNA  243 (444)
T ss_pred             --eEEEeeeeecCcCCCcC----HHHHHHHHHhccCCCEEEEEEcCCcCCCcchhC----HHHHHHHHHHcCCEEEEECc
Confidence              1111110 001112222    588999887322245667776665444443333    99999999999999999999


Q ss_pred             ccCccCCCCCCccccccCC-Ccceee--ecccccC-ccceEEEEe-CHHHHHhhcccccccCCCCcHHHHHHHHHHHHhh
Q 011777          294 QTGFGRTGSHYWGFETQGV-IPDIVT--MAKGIGN-GLPLGAVVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVI  368 (477)
Q Consensus       294 ~~gfgr~G~~~~~~~~~gv-~pDivt--~sK~lg~-G~pig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l  368 (477)
                      |......-.... -..... ..|+++  ++|.+.. |. -|.+++ ++++.+.+..... +.. .+...+.+....+...
T Consensus       244 yg~~~~~~~~~~-~~g~~~Grad~vv~s~hK~l~~pg~-Gg~I~~~d~el~~~i~~~y~-g~~-~~s~~~~~~~~ll~~G  319 (444)
T TIGR03531       244 YGLQSNKYMELI-NKAIKVGRVDAVVSSTDKNFMVPVG-GAIIYSFDENFIQEISKSYP-GRA-SASPSLDVLITLLSLG  319 (444)
T ss_pred             CcCcChhhhhhh-hccccccCCCeEEEeCccCCCCCCC-EEEEEECCHHHHHHHHHhcc-CCC-CChHHHHHHHHHHHhC
Confidence            973211000000 011111 246665  4599874 33 345556 6778777764322 222 2233444444444432


Q ss_pred             ch--hhHHHHHHHHHHHHHHHHHHHHHhCCC-ceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCce----ee
Q 011777          369 DK--ERRQAHCADVGSHLLGRLRTLQERHDI-IGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVL----VG  441 (477)
Q Consensus       369 ~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~-~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~----v~  441 (477)
                      .+  ++++++..++.+++.+.|+++.++++. +.+++..-.-+++.+..-.      ......+...|..++|-    +.
T Consensus       320 ~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~------~~~~~~~g~~l~~~~v~g~r~v~  393 (444)
T TIGR03531       320 SKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLK------GKDPTMLGSMLYSRRVTGPRVVT  393 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEeccccc------ccCHHHHHHHHHhCCCCCceeec
Confidence            22  467778888899999999999888753 3333333333344443211      11245667777777662    22


Q ss_pred             ccC-------CC---C--------CEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          442 KGG-------LH---G--------NVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       442 ~~~-------~~---~--------~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      ++.       .+   +        .++-+.....++++|||.++++|++++
T Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~~  444 (444)
T TIGR03531       394 NGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKSL  444 (444)
T ss_pred             CCCceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhcC
Confidence            321       01   1        134445556679999999999999864

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.55  E-value=1.2e-12  Score=130.88  Aligned_cols=290  Identities=17%  Similarity=0.170  Sum_probs=168.4

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +.++++.+|....|+++|+++.++  +.++.++||..|+.+++.....  .+++||+....|+|..........      
T Consensus        47 ~~Y~R~gnPt~~~le~~la~Le~g--~~a~~~~SGmaAi~~~l~~ll~--~Gd~iv~~~~~Y~~t~~~~~~~l~------  116 (386)
T PF01053_consen   47 YIYSRYGNPTVRALEQRLAALEGG--EDALLFSSGMAAISAALLALLK--PGDHIVASDDLYGGTYRLLEELLP------  116 (386)
T ss_dssp             CSBTTTC-HHHHHHHHHHHHHHT---SEEEEESSHHHHHHHHHHHHS---TTBEEEEESSSSHHHHHHHHHCHH------
T ss_pred             cceeccccccHHHHHHHHHHhhcc--cceeeccchHHHHHHHHHhhcc--cCCceEecCCccCcchhhhhhhhc------
Confidence            445567789999999999999755  6788999999999988875533  567899999999875433221111      


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhC-cEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAG-GVC  288 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g-ill  288 (477)
                         ..|+....+..      . |    .++++++++    +++++|++|++.|+...+..    +++|.++|+++| +++
T Consensus       117 ---~~gv~v~~~d~------~-d----~~~l~~~l~----~~t~~v~~EspsNP~l~v~D----l~~i~~~a~~~g~~~~  174 (386)
T PF01053_consen  117 ---RFGVEVTFVDP------T-D----LEALEAALR----PNTKLVFLESPSNPTLEVPD----LEAIAKLAKEHGDILV  174 (386)
T ss_dssp             ---HTTSEEEEEST------T-S----HHHHHHHHC----TTEEEEEEESSBTTTTB-------HHHHHHHHHHTTT-EE
T ss_pred             ---ccCcEEEEeCc------h-h----HHHHHhhcc----ccceEEEEEcCCCccccccc----HHHHHHHHHHhCCceE
Confidence               01333221110      0 1    578888887    48999999998888766666    999999999999 999


Q ss_pred             EEcCcccCccCCCCCCccccccCCCccee--eecccccC-c-cceEEEEeCH--HHHHhhcccccccCCCCcHHHHHHHH
Q 011777          289 IADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-G-LPLGAVVTTP--EIANVMAQKIQFNTFGGNPVCSAGGL  362 (477)
Q Consensus       289 I~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pig~v~~~~--~~~~~~~~~~~~~t~~~~~~~~aaa~  362 (477)
                      |+|......       +.++-.....|++  +++|-++| | .-.|+++++.  ++.+.+........-..+|..+...+
T Consensus       175 vVDnT~atp-------~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~  247 (386)
T PF01053_consen  175 VVDNTFATP-------YNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLL  247 (386)
T ss_dssp             EEECTTTHT-------TTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHH
T ss_pred             Eeeccccce-------eeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHh
Confidence            999987521       1222222235666  57799986 4 5668888764  67766553221111122355444444


Q ss_pred             HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee------------------eccceeEEEEEeeCCCCCCccHH
Q 011777          363 AVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV------------------RGRGLMVGMELVTDRKEKTPAKA  424 (477)
Q Consensus       363 a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v------------------~g~g~~~~i~~~~~~~~~~~~~~  424 (477)
                      ..|+.+  .-..++..++...+.+.|+    ++|.+..|                  .|.|.++.|++...       ..
T Consensus       248 rgl~Tl--~~R~~~~~~nA~~lA~~L~----~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~-------~~  314 (386)
T PF01053_consen  248 RGLRTL--PLRMERQNENAEALAEFLE----EHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGG-------EE  314 (386)
T ss_dssp             HHHTTH--HHHHHHHHHHHHHHHHHHH----TSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSH-------HH
T ss_pred             cCCCcH--HHHHHHHHHHHHHHHHHHH----hCCCCCeEEEcccccccceeeeeecccccCceeEEEeccc-------hh
Confidence            444432  1223444455555555444    45544322                  35667889998432       12


Q ss_pred             HHHHHHHHHHH--cCc--------eeecc---------------CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          425 ETAVLFEKLRE--LGV--------LVGKG---------------GLHGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       425 ~~~~~~~~l~~--~Gv--------~v~~~---------------~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      ....+.+.|.=  .|.        +..|.               |...+.||++..+    ||.+.+++-|+++|+
T Consensus       315 ~~~~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGl----Ed~~dLi~Dl~~AL~  386 (386)
T PF01053_consen  315 AARRFLDALKLFSIAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGL----EDPDDLIADLEQALE  386 (386)
T ss_dssp             HHHHHHHH-SSSEESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--S----S-HHHHHHHHHHHHH
T ss_pred             hhHhHHhhhhhHhhhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEecc----CCHHHHHHHHHHhcC
Confidence            34556666531  111        11111               1224679997665    567777777777764

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.55  E-value=1.2e-12  Score=131.69  Aligned_cols=217  Identities=18%  Similarity=0.105  Sum_probs=131.2

Q ss_pred             ccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCC
Q 011777          132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI  211 (477)
Q Consensus       132 ~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  211 (477)
                      ..++.++...+|+++|+++.+.  +..++++||+.|+..++.+   ..++++||+..+.|.+..........        
T Consensus        44 y~r~~~p~~~~Le~~lA~l~g~--~~~~~~~sG~aai~~~~~~---l~~Gd~Viv~~~~y~~~~~~~~~~~~--------  110 (377)
T PRK07671         44 YSRTGNPTRAALEELIAVLEGG--HAGFAFGSGMAAITAVMML---FSSGDHVILTDDVYGGTYRVMTKVLN--------  110 (377)
T ss_pred             cCCCCChHHHHHHHHHHHHhCC--CceEEeCCHHHHHHHHHHH---hCCCCEEEECCCccchHHHHHHHHHh--------
Confidence            4456788899999999999865  4567788999888766532   23567899988888654322111100        


Q ss_pred             CCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777          212 PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD  291 (477)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  291 (477)
                       ..|+....++.      . |    .++++++++    +++++|++|..+|+.|.+.+    +++|.++|+++|+++|+|
T Consensus       111 -~~G~~v~~v~~------~-d----~~~l~~ai~----~~tklV~le~P~NPtg~~~d----l~~I~~la~~~g~~lvvD  170 (377)
T PRK07671        111 -RFGIEHTFVDT------S-N----LEEVEEAIR----PNTKAIYVETPTNPLLKITD----IKKISTIAKEKGLLTIVD  170 (377)
T ss_pred             -cCCeEEEEECC------C-C----HHHHHHhcC----CCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEE
Confidence             01222222211      0 1    477877775    46788888887777786665    999999999999999999


Q ss_pred             CcccCccCCCCCCccccccCCCccee--eecccccC-c-cceEEEEe-CHHHHHhhcccccccCCCCcHHHHHHHHHHHH
Q 011777          292 EVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-G-LPLGAVVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLR  366 (477)
Q Consensus       292 Ev~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~  366 (477)
                      |+|... ..+ .+.     ....|++  +++|.++| + .-.|++++ ++++.+.+........-..++..+..++..++
T Consensus       171 ~a~~~~-~~~-~p~-----~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~  243 (377)
T PRK07671        171 NTFMTP-YWQ-SPI-----SLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLK  243 (377)
T ss_pred             CCCCcc-ccC-Chh-----hhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCcC
Confidence            998632 112 111     2234666  47799985 2 33455666 56677766543322222334555554444443


Q ss_pred             hhchhhHHHHHHHHHHHHHHHHHH
Q 011777          367 VIDKERRQAHCADVGSHLLGRLRT  390 (477)
Q Consensus       367 ~l~~~~~~~~~~~~~~~l~~~L~~  390 (477)
                      .+.  -..++..++...+.+.|.+
T Consensus       244 tl~--~R~~~~~~na~~la~~L~~  265 (377)
T PRK07671        244 TLG--IRMEEHETNSRAIAEFLNN  265 (377)
T ss_pred             hHH--HHHHHHHHHHHHHHHHHHc
Confidence            322  2344445555555555543

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.55  E-value=2.1e-13  Score=121.00  Aligned_cols=167  Identities=22%  Similarity=0.164  Sum_probs=113.0

Q ss_pred             HHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeee
Q 011777          140 IADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHV  219 (477)
Q Consensus       140 ~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (477)
                      ..++.+++++.++.+.+.+++++||++|++.+++.++.  .+++|++.++.||+.........            +....
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~------------g~~~~   67 (170)
T cd01494           2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLG--PGDEVIVDANGHGSRYWVAAELA------------GAKPV   67 (170)
T ss_pred             HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCC--CCCEEEEeecccceehhhHHHhc------------CCEEE
Confidence            35788889998855567899999999999999997753  36789999999988763111111            22222


Q ss_pred             cCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccC
Q 011777          220 VNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGR  299 (477)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr  299 (477)
                      .++.......       ..+++++.+.....+++++++++.++++|...+    +++|.++|+++|+++|+|++|.++..
T Consensus        68 ~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~  136 (170)
T cd01494          68 PVPVDDAGYG-------GLDVAILEELKAKPNVALIVITPNTTSGGVLVP----LKEIRKIAKEYGILLLVDAASAGGAS  136 (170)
T ss_pred             EeccCCCCcc-------chhhhhhhhccccCceEEEEEecCcCCCCeEcC----HHHHHHHHHHcCCEEEEecccccccc
Confidence            2211110000       011112222222467899999999888887776    69999999999999999999997765


Q ss_pred             CCCCCccccccCCCcceeeec--ccccCccceEEEEeC
Q 011777          300 TGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTT  335 (477)
Q Consensus       300 ~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~  335 (477)
                      .. ..  .+.....+|+++.|  |.+++ .+.|+++++
T Consensus       137 ~~-~~--~~~~~~~~d~~~~s~~K~~~~-~~~G~l~~~  170 (170)
T cd01494         137 PA-PG--VLIPEGGADVVTFSLHKNLGG-EGGGVVIVK  170 (170)
T ss_pred             cc-cc--cccccccCCEEEEEcccccCC-CceEEEEeC
Confidence            43 11  22233457888776  99987 788998764

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.53  E-value=2e-12  Score=129.34  Aligned_cols=315  Identities=11%  Similarity=0.035  Sum_probs=175.6

Q ss_pred             CCHHHHHHHHHHHhhccccccc---cC-------ChHHHHHHHHHHhhCCC-CCCEEEEeCC-hHHHHHHHHHHHHhccC
Q 011777          113 CHPDVLNAIFEQSKLLQHATTI---YL-------HHAIADFAEALASKMPG-NLKVVYFVNS-GTEANELAMLMARLSTG  180 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~---~~-------~~~~~~l~~~La~~~~~-~~~~v~~~~s-GseA~~~Al~~ar~~~~  180 (477)
                      .++.|++|+.+.+.... ...+   ..       .....+.+++++++++. +.++|+|++| ||+|++.++.......+
T Consensus        10 ~p~~V~~a~~~~~~~~~-~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~~~   88 (355)
T cd00611          10 LPEEVLEQAQKELLDFN-GLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLGDKG   88 (355)
T ss_pred             CCHHHHHHHHHHHhhcc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCC
Confidence            47899999999875421 1111   01       14467889999999875 3457888866 99999998885522111


Q ss_pred             CceEEEEccCccCCccccccc-ccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecc
Q 011777          181 NLGMIALRNAYHGGSSGTIGL-TALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAET  259 (477)
Q Consensus       181 ~~~ii~~~~~yhG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~ep  259 (477)
                      +..+|+ .+.|.-+ ...+.. .+.          .+..+..+..  ..+.+ .   .+..+..+.    ++++.|.+..
T Consensus        89 ~~~~i~-~g~~~~~-~~~~a~~~g~----------~~~~~~~~~~--g~~~~-~---~~~~~~~~~----~~~~lV~~~h  146 (355)
T cd00611          89 TADYVV-TGAWSAK-AAKEAKRYGG----------VVVIVAAKEE--GKYTK-I---PDVETWDLA----PDAAYVHYCS  146 (355)
T ss_pred             eEEEEE-CCHHHHH-HHHHHHhcCC----------CcEEEecccc--cCCCC-C---CCHhhcCCC----CCCCEEEEeC
Confidence            223333 2333211 110100 000          1122221110  00100 0   011112222    4667777777


Q ss_pred             cCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHH
Q 011777          260 IQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIA  339 (477)
Q Consensus       260 i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~  339 (477)
                      +.+.+|.+.+         ++++.||+++++|-+|+ +|.   ....++.+++  ++.+--|.+| ...+|++++++++.
T Consensus       147 ~~t~tG~~~~---------~i~~~~g~~~~VDa~qs-~g~---~~idv~~~~~--~~ss~~K~lG-P~G~g~l~~~~~~~  210 (355)
T cd00611         147 NETIHGVEFD---------EVPDTGGVPLVADMSSN-ILS---RPIDVSKFGV--IYAGAQKNLG-PAGVTVVIVRKDLL  210 (355)
T ss_pred             CcccccEEcc---------eecccCCCeEEEEcccc-ccC---CCCCHHHhCE--EEeecccccC-CCceEEEEECHHHH
Confidence            7777786532         45566999999999998 432   2333333332  3322448774 44589999999988


Q ss_pred             Hhhcccc-----------cccCC-CCcHHHHHHHHHHHHhhchh----hHHHHHHHHHHHHHHHHHHHHHhCCCceeeec
Q 011777          340 NVMAQKI-----------QFNTF-GGNPVCSAGGLAVLRVIDKE----RRQAHCADVGSHLLGRLRTLQERHDIIGDVRG  403 (477)
Q Consensus       340 ~~~~~~~-----------~~~t~-~~~~~~~aaa~a~l~~l~~~----~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g  403 (477)
                      +.+....           ...++ +.|.....+..++|+.+.++    +..++.+++.++++++|.++..-+....+...
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~  290 (355)
T cd00611         211 GKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRA  290 (355)
T ss_pred             hhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHH
Confidence            7654321           11113 33455666666888887654    34555666666776666665110101111111


Q ss_pred             cc-eeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          404 RG-LMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       404 ~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      +. ..+.+.+...        .....+...+.++|+...++-...+.+|+++...+|++|||++++.|+++.
T Consensus       291 rs~~vvsf~~~~~--------~l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~~  354 (355)
T cd00611         291 RSRMNVPFRLGKE--------ELEKEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEFQ  354 (355)
T ss_pred             cCceEEEEEcCCh--------hhhHHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHHh
Confidence            22 3344544210        112455568888999854442224789999999999999999999999853

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.53  E-value=6.8e-12  Score=116.20  Aligned_cols=315  Identities=16%  Similarity=0.179  Sum_probs=187.5

Q ss_pred             cccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEE
Q 011777          107 TVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIA  186 (477)
Q Consensus       107 ~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~  186 (477)
                      .+++||.||++.+-+.+.++...+.                -+..  +.....+..||+.+.|.|+--...  +++.+++
T Consensus        38 ~~~lgh~sPe~~qIm~~v~egikyV----------------FkT~--n~~tf~isgsGh~g~E~al~N~le--Pgd~vLv   97 (385)
T KOG2862|consen   38 RPSLGHMSPEFVQIMDEVLEGIKYV----------------FKTA--NAQTFVISGSGHSGWEAALVNLLE--PGDNVLV   97 (385)
T ss_pred             CCccccCCHHHHHHHHHHHHHHHHH----------------hccC--CCceEEEecCCcchHHHHHHhhcC--CCCeEEE
Confidence            3468899999888877755543221                1111  224577899999999999875443  6778888


Q ss_pred             EccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCe
Q 011777          187 LRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGA  266 (477)
Q Consensus       187 ~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~  266 (477)
                      +..+-.|...+-+.-.    +.     ..++.+  +.++.....      ++++.+.+.+   +++.+|.+...-..+|+
T Consensus        98 ~~~G~wg~ra~D~~~r----~g-----a~V~~v--~~~~G~~~~------le~i~~~lsq---h~p~~vfv~hgdsSTgV  157 (385)
T KOG2862|consen   98 VSTGTWGQRAADCARR----YG-----AEVDVV--EADIGQAVP------LEEITEKLSQ---HKPKAVFVTHGDSSTGV  157 (385)
T ss_pred             EEechHHHHHHHHHHh----hC-----ceeeEE--ecCcccCcc------HHHHHHHHHh---cCCceEEEEecCccccc
Confidence            7665554322211110    00     122222  222211122      5778887774   45667777777777887


Q ss_pred             eeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccc
Q 011777          267 VELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKI  346 (477)
Q Consensus       267 ~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~  346 (477)
                      ..+   .++...++|++|+.++++|-|-+ +|  | ..|.++.+|+..-...--|++++.-.++.+..++...+.++...
T Consensus       158 ~q~---~~~~~g~lc~k~~~lllVD~VaS-lg--g-t~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK  230 (385)
T KOG2862|consen  158 LQD---LLAISGELCHKHEALLLVDTVAS-LG--G-TEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRK  230 (385)
T ss_pred             cch---HHHHHHHHhhcCCeEEEEechhh-cC--C-ccceehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhcc
Confidence            665   25677899999999999999987 33  4 56778888874433334599997445566888888888776432


Q ss_pred             c-----------ccCCC-----------CcHHHH-HHHHHHHHhhchh---hHHHHHHHHHHHHHHHHHHHHHhCCCcee
Q 011777          347 Q-----------FNTFG-----------GNPVCS-AGGLAVLRVIDKE---RRQAHCADVGSHLLGRLRTLQERHDIIGD  400 (477)
Q Consensus       347 ~-----------~~t~~-----------~~~~~~-aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~  400 (477)
                      .           .++|+           ..|+.. -+..++|+.+-++   +..++-++++++++..|+++.-+.-....
T Consensus       231 ~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e  310 (385)
T KOG2862|consen  231 TKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALGLQLFVVDE  310 (385)
T ss_pred             CCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceecCh
Confidence            1           11221           123333 3344677776654   44566677777888887775221110000


Q ss_pred             eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC---CCCCEEEEeCCCC-CcHHHHHHHHHHHHHHHhh
Q 011777          401 VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG---LHGNVFRIKPPMC-FTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       401 v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---~~~~~iRi~p~~~-~t~e~i~~~l~~l~~~l~~  476 (477)
                      -...-..-.+        +.|...+..+++..+++++.+...++   ..+.++||..--+ .+.|.|+..++.|..++.+
T Consensus       311 ~~rlptvttv--------~vp~gvDw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~  382 (385)
T KOG2862|consen  311 ELRLPTVTTV--------KVPYGVDWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQR  382 (385)
T ss_pred             hhccCcceee--------ecCCCCCHHHHHHHHHHhcCEEeccccCCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence            0000001111        22444456788888888865544443   2357899964333 4678899999999888753

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.52  E-value=4.2e-12  Score=127.28  Aligned_cols=239  Identities=13%  Similarity=0.039  Sum_probs=151.3

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +.+++..+|....|+++|+++-+.  +..++++||+.|+.+++...  ..++++||+....|++.........       
T Consensus        54 ~~YsR~~nPt~~~le~~la~LEg~--~~a~~~~SGmaAi~~~~~~l--l~~GD~Vv~~~~~Yg~t~~l~~~~l-------  122 (395)
T PRK08114         54 LFYGRRGTLTHFSLQEAMCELEGG--AGCALYPCGAAAVANAILAF--VEQGDHVLMTGTAYEPTQDFCSKIL-------  122 (395)
T ss_pred             ccccCCCChhHHHHHHHHHHHhCC--CeEEEEhHHHHHHHHHHHHH--cCCCCEEEEeCCCcHHHHHHHHHHH-------
Confidence            334566789999999999998754  57888999999999988744  2356788888777776543321100       


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhC--cE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAG--GV  287 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g--il  287 (477)
                        ...|+....++.      . |    .++++++++    +++++|++|.+.|+.|.+.+    +++|.++|+++|  ++
T Consensus       123 --~~~Gi~v~~vd~------~-d----~~~l~~~l~----~~TrlV~~EtpsNp~~~v~D----I~~Ia~ia~~~g~g~~  181 (395)
T PRK08114        123 --SKLGVTTTWFDP------L-I----GADIAKLIQ----PNTKVVFLESPGSITMEVHD----VPAIVAAVRSVNPDAV  181 (395)
T ss_pred             --HhcCcEEEEECC------C-C----HHHHHHhcC----CCceEEEEECCCCCCCEeec----HHHHHHHHHHhCCCCE
Confidence              001222211110      0 1    367888776    46899999999999998888    999999999985  99


Q ss_pred             EEEcCcccCccCCCCCCccccccCCCcceee--ecccccC-c-cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHH
Q 011777          288 CIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGN-G-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLA  363 (477)
Q Consensus       288 lI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a  363 (477)
                      +|+|.+++    +| ..  ++-.....|+++  ..|.++| | .-.|.++.+++..+.+........-..+|..+...+.
T Consensus       182 lvVDnT~a----~p-~~--~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~r  254 (395)
T PRK08114        182 IMIDNTWA----AG-VL--FKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYLMGQMVDADTAYMTSR  254 (395)
T ss_pred             EEEECCCc----cc-cc--cCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHhccCCCCHHHHHHHHc
Confidence            99999986    23 11  343444567775  5599997 4 7788888888766655422111112335665554444


Q ss_pred             HHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCce------------------eeeccceeEEEEEe
Q 011777          364 VLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIG------------------DVRGRGLMVGMELV  413 (477)
Q Consensus       364 ~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~------------------~v~g~g~~~~i~~~  413 (477)
                      .|+.+.  -..++..++...+.+.|++    ||.+.                  ...|.|.|+.+++.
T Consensus       255 gl~TL~--lR~~~~~~na~~va~~L~~----hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~  316 (395)
T PRK08114        255 GLRTLG--VRLRQHEESSLKVAEWLAE----HPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLK  316 (395)
T ss_pred             CCCcHH--HHHHHHHHHHHHHHHHHHc----CCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEec
Confidence            443321  1234444455555555543    33221                  12466888888884

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.52  E-value=5.2e-12  Score=128.04  Aligned_cols=260  Identities=16%  Similarity=0.057  Sum_probs=153.2

Q ss_pred             CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCcc
Q 011777          113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYH  192 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yh  192 (477)
                      ...+-.+++.+.... .+.+.+..+|...+|++.++++.+.  +.++.++||+.|+.+++....  ..+++||+....|.
T Consensus        37 ~~~~~~~~~~~~~~~-g~~ysR~~nPtv~~lE~~la~leg~--~~av~~~SG~aAi~~al~all--~~GD~VI~~~~~Y~  111 (432)
T PRK06702         37 DTSDDLAALFNLEAE-GYIYTRIGNPTLAAFEQKLAELEGG--VGAVATASGQAAIMLAVLNIC--SSGDHLLCSSTVYG  111 (432)
T ss_pred             CCHHHHHHHHhcccc-CceeECCCCcHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHhc--CCCCEEEECCCchH
Confidence            344444444443322 2222334478899999999999865  468899999999999997552  46688999888887


Q ss_pred             CCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCch
Q 011777          193 GGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPG  272 (477)
Q Consensus       193 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~  272 (477)
                      +..........         ..|+......      ++.|    .++++++|+    +++++|++|...++.+.+..   
T Consensus       112 ~T~~~~~~~l~---------~~Gi~v~~vd------~~~d----~~~l~~~I~----~~Tk~I~~e~pgnP~~~v~D---  165 (432)
T PRK06702        112 GTFNLFGVSLR---------KLGIDVTFFN------PNLT----ADEIVALAN----DKTKLVYAESLGNPAMNVLN---  165 (432)
T ss_pred             HHHHHHHHHHH---------HCCCEEEEEC------CCCC----HHHHHHhCC----cCCeEEEEEcCCCccccccC---
Confidence            65433111000         0122221110      1111    367888886    46789999987777776666   


Q ss_pred             hHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccC-ccceE-EEEeCH----------HH
Q 011777          273 YLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-GLPLG-AVVTTP----------EI  338 (477)
Q Consensus       273 ~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pig-~v~~~~----------~~  338 (477)
                       +++|.++|++||+++|+|+++.    +   +..++-+..-.||+  +++|-++| +--+| .++...          ++
T Consensus       166 -i~~I~~iA~~~gi~livD~T~~----t---P~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l  237 (432)
T PRK06702        166 -FKEFSDAAKELEVPFIVDNTLA----T---PYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPEL  237 (432)
T ss_pred             -HHHHHHHHHHcCCEEEEECCCC----c---hhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCccccccccccc
Confidence             9999999999999999999874    2   22233233345655  68898886 33333 333211          11


Q ss_pred             HH---------------------hhc-ccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH---
Q 011777          339 AN---------------------VMA-QKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQE---  393 (477)
Q Consensus       339 ~~---------------------~~~-~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~---  393 (477)
                      .+                     ... ..........+|+.+..++..|+.+  +...++..++...+.+.|++...   
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~rgL~Tl--~lR~~r~~~Na~~la~~L~~~p~V~~  315 (432)
T PRK06702        238 VEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGLETL--HLRMERHSENALAVAKWLADHERIEW  315 (432)
T ss_pred             ccccccccccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHhccCcH--HHHHHHHHHHHHHHHHHHHhCCCcce
Confidence            10                     000 0111123466788877777777644  23445555666666666654210   


Q ss_pred             -hCCCce----------ee-eccceeEEEEEe
Q 011777          394 -RHDIIG----------DV-RGRGLMVGMELV  413 (477)
Q Consensus       394 -~~~~~~----------~v-~g~g~~~~i~~~  413 (477)
                       .||...          .. .|.|.++.+++.
T Consensus       316 V~yPgl~~~p~~~l~~~~~~~g~gg~~sf~l~  347 (432)
T PRK06702        316 VNYPGLDSNENYSLAQKYLKKGASGVLTFGIK  347 (432)
T ss_pred             EECCCCCCCccHHHHHHhCcCCCceEEEEEec
Confidence             112111          11 456788888884

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.52  E-value=6.7e-12  Score=138.03  Aligned_cols=303  Identities=14%  Similarity=0.169  Sum_probs=175.8

Q ss_pred             hHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhcc---C--CceEEEEccCccCCcccccccccCCCCCCCCC
Q 011777          138 HAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLST---G--NLGMIALRNAYHGGSSGTIGLTALNTWKYPIP  212 (477)
Q Consensus       138 ~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~---~--~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  212 (477)
                      ....++.++|+++++.+ .-.+..|+|+.++.+++..+|.+.   |  +..++....+-|+.........          
T Consensus       542 ~~i~e~q~~l~eltG~d-~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~----------  610 (954)
T PRK05367        542 ELIDQLEAWLAEITGYD-AVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMA----------  610 (954)
T ss_pred             HHHHHHHHHHHHHHCCC-CEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHC----------
Confidence            34568889999998643 334446688888888887777542   1  1234444566666544433222          


Q ss_pred             CCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcC
Q 011777          213 QGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADE  292 (477)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  292 (477)
                        |+..+.++....+..+      .++|++.++.. ..++++|++......|+...+    +++|.++|+++|+++++|.
T Consensus       611 --G~~vv~v~~d~~G~iD------~~~L~~~i~~~-~~~la~V~it~pst~G~~e~~----I~eI~~i~h~~G~~v~VDg  677 (954)
T PRK05367        611 --GMKVVVVACDENGNID------LDDLRAKAEEH-ADNLAAIMITYPSTHGVFEET----IREICEIVHEHGGQVYLDG  677 (954)
T ss_pred             --CCEEEEECCCCCCCcC------HHHHHHHHhcc-CCCeEEEEEEcCCCCeeecCC----HHHHHHHHHHcCCEEEEEC
Confidence              3333333222112222      57888887621 235777766543333332345    8999999999999999999


Q ss_pred             cccCccCCCCCCcccccc-CCCcceeeec--cccc-----CccceEEEEeCHHHHHhhccccc--------ccCCCCcHH
Q 011777          293 VQTGFGRTGSHYWGFETQ-GVIPDIVTMA--KGIG-----NGLPLGAVVTTPEIANVMAQKIQ--------FNTFGGNPV  356 (477)
Q Consensus       293 v~~gfgr~G~~~~~~~~~-gv~pDivt~s--K~lg-----~G~pig~v~~~~~~~~~~~~~~~--------~~t~~~~~~  356 (477)
                      ++.+ +..+     +... ....|+++++  |.|+     ||..+|++.+++.+...+.....        .++....+.
T Consensus       678 A~~~-al~~-----l~~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~  751 (954)
T PRK05367        678 ANMN-AQVG-----LARPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPF  751 (954)
T ss_pred             cChh-hccC-----CCChhhcCCCEEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHH
Confidence            9852 1111     1111 2346888776  9885     34668899888776655543210        122222233


Q ss_pred             ----HHHHHHHHHHhhchhhHHHHHH---HHHHHHHHHHHHHHHhCCCceeeecc--ceeEEEEEeeCCCCCCccHHHHH
Q 011777          357 ----CSAGGLAVLRVIDKERRQAHCA---DVGSHLLGRLRTLQERHDIIGDVRGR--GLMVGMELVTDRKEKTPAKAETA  427 (477)
Q Consensus       357 ----~~aaa~a~l~~l~~~~~~~~~~---~~~~~l~~~L~~l~~~~~~~~~v~g~--g~~~~i~~~~~~~~~~~~~~~~~  427 (477)
                          ....+...+..+..+.+.+..+   .+..|+.++|.+.   ++....-++.  -.-+.+++..-+   ........
T Consensus       752 g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~---~~~~~~~~~~~~~~e~i~~~~~~~---~~~g~~~~  825 (954)
T PRK05367        752 GSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDH---YPVLYTGANGRVAHECILDLRPLK---ESTGITVD  825 (954)
T ss_pred             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh---cCccccCCCCCcccceEEEeeccc---ccCCCCHH
Confidence                2222344455555566655555   7888998888763   3322110000  001223332100   01112346


Q ss_pred             HHHHHHHHcCceeeccC-CCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          428 VLFEKLRELGVLVGKGG-LHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       428 ~~~~~l~~~Gv~v~~~~-~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ++.++|.+.|+...... ...+.++|+|.-..+++|||+++++|..+..+
T Consensus       826 di~krL~d~G~~~~t~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e  875 (954)
T PRK05367        826 DIAKRLIDYGFHAPTMSFPVAGTLMVEPTESESKAELDRFCDAMIAIRAE  875 (954)
T ss_pred             HHHHHHHHCCCeEeecCCccCCEEEEEeeecCCHHHHHHHHHHHHHHHHH
Confidence            79999999999876521 12578999999999999999999999876543

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.52  E-value=5.8e-12  Score=128.53  Aligned_cols=166  Identities=21%  Similarity=0.169  Sum_probs=112.6

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +.+.++.++...+|+++++++.+.  +..++++||++|+.+++....  .++++||+....|++........        
T Consensus        56 ~~y~R~~~p~~~~le~~lA~l~g~--~~av~~sSGt~Al~~al~~ll--~~Gd~Vi~~~~~y~~t~~~~~~~--------  123 (433)
T PRK08134         56 HVYSRISNPTVAVLEERVAALEGG--VGAIATASGQAALHLAIATLM--GAGSHIVASSALYGGSHNLLHYT--------  123 (433)
T ss_pred             ceeecCcChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHHh--CCCCEEEEeCCccHHHHHHHHHH--------
Confidence            334456678899999999999865  357899999999999987552  35678888887887643221110        


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                       ....|+.....+.      + |    .++++++|+    +++++|++|.+.++.|.+.+    +++|.++|++||+++|
T Consensus       124 -l~~~Gi~v~~vd~------~-d----~~~l~~~i~----~~TklV~~e~~~np~g~v~D----i~~I~~la~~~gi~li  183 (433)
T PRK08134        124 -LRRFGIETTFVKP------G-D----IDGWRAAIR----PNTRLLFGETLGNPGLEVLD----IPTVAAIAHEAGVPLL  183 (433)
T ss_pred             -HhhCCeEEEEECC------C-C----HHHHHHhcC----CCCeEEEEECCCcccCcccC----HHHHHHHHHHcCCEEE
Confidence             0011333222111      0 1    478888886    46789999998888888887    9999999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCcceeee--cccccC-ccceEEEEe
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIVTM--AKGIGN-GLPLGAVVT  334 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDivt~--sK~lg~-G~pig~v~~  334 (477)
                      +|.+|+    +| ..  ........|++++  .|.++| |--+|.++.
T Consensus       184 vD~t~a----~~-~~--~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~  224 (433)
T PRK08134        184 VDSTFT----TP-YL--LRPFEHGADLVYHSATKFLGGHGTAIGGVLV  224 (433)
T ss_pred             EECCCc----cc-cc--CCchhcCCCEEEeccccccCCCCCceEEEEE
Confidence            999986    22 11  1112334577755  598886 555555544

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.52  E-value=1.8e-11  Score=132.48  Aligned_cols=300  Identities=14%  Similarity=0.140  Sum_probs=187.0

Q ss_pred             hHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhcc-----CCceEEEEccCccCCcccccccccCCCCCCCCC
Q 011777          138 HAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLST-----GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP  212 (477)
Q Consensus       138 ~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~-----~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  212 (477)
                      ....++.++|+++++-+ ..-++.++|+.|..+++..+|.|.     ++..++....+-||.........          
T Consensus       530 q~i~elq~~l~eltGmd-~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~~----------  598 (939)
T TIGR00461       530 ELIAQLEKWLCSITGFD-AISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMA----------  598 (939)
T ss_pred             HHHHHHHHHHHHHHCCC-CcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHHC----------
Confidence            34578999999998654 356678899999888888887752     22345555678887765443322          


Q ss_pred             CCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcC
Q 011777          213 QGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADE  292 (477)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  292 (477)
                        |+..+.++....+..+      +++|++.++. +..++++|++...++. |.+.++   +++|.++|+++|.++++|-
T Consensus       599 --G~~Vv~V~~d~~G~iD------le~L~~~i~~-~~~~taaV~iT~pst~-G~~e~~---I~eI~~iah~~G~~v~VDg  665 (939)
T TIGR00461       599 --GMQVVPVNCDQDGNID------LVDLKNKAEQ-HGDELAAVMVTYPSTH-GVFEPT---IQHACDIVHSFGGQVYLDG  665 (939)
T ss_pred             --CCEEEEeccCCCCCcC------HHHHHHHHhh-cCCceEEEEEEeCCcC-ceeccc---HHHHHHHHHHcCCEEEEEe
Confidence              3333333322222222      5888888873 2357888888665554 544432   8999999999999999999


Q ss_pred             cccC-ccCCCCCCccccc-cCCCcceeeec--cccc-----CccceEEEEeCHHHHHhhccccc----------------
Q 011777          293 VQTG-FGRTGSHYWGFET-QGVIPDIVTMA--KGIG-----NGLPLGAVVTTPEIANVMAQKIQ----------------  347 (477)
Q Consensus       293 v~~g-fgr~G~~~~~~~~-~gv~pDivt~s--K~lg-----~G~pig~v~~~~~~~~~~~~~~~----------------  347 (477)
                      +|.. ..  +     ... -....|+++++  |+|+     ||..+|++.+++++...+.....                
T Consensus       666 Aq~~al~--~-----l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~  738 (939)
T TIGR00461       666 ANMNAQV--G-----LTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSV  738 (939)
T ss_pred             cChhhCC--C-----CCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCccccccc
Confidence            9852 11  1     111 12456888875  9888     56788999999876655542110                


Q ss_pred             ccCCCCcHHHHHHHHHHHHhhchhhH---HHHHHHHHHHHHHHHHHHHHhCCCceeeecccee---EEEEEeeCCCCCCc
Q 011777          348 FNTFGGNPVCSAGGLAVLRVIDKERR---QAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLM---VGMELVTDRKEKTP  421 (477)
Q Consensus       348 ~~t~~~~~~~~aaa~a~l~~l~~~~~---~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~---~~i~~~~~~~~~~~  421 (477)
                      .+.+.++......+...|..+..+.+   .+....+..|+.++|.+   .++.... ...+.+   +.+++..   .+..
T Consensus       739 s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~---~~~~l~~-~~~~~~~hEfv~~~~~---~~~~  811 (939)
T TIGR00461       739 SAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD---HYPILFV-GTLKHVAHECILDLRP---LKAK  811 (939)
T ss_pred             cccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc---cCccccc-CCCCceeEEEEEeccc---hhhh
Confidence            01234455555666777777766654   34455577788888876   2332221 111221   2223211   0111


Q ss_pred             cHHHHHHHHHHHHHcCceeeccC-CCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          422 AKAETAVLFEKLRELGVLVGKGG-LHGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       422 ~~~~~~~~~~~l~~~Gv~v~~~~-~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      .+....++.++|.+.|++..... .-.+.+-|.|.-..|++|||++++++.++-+
T Consensus       812 ~g~~~~dIakrL~d~G~hapt~~~pv~g~lmiepTE~eskeelD~f~~al~~I~~  866 (939)
T TIGR00461       812 TGIEAIDVAKRLQDYGFHAPTLSFPVPGTLMVEPTESESLEELDRFCDAMIAIKE  866 (939)
T ss_pred             cCCCHHHHHHHHHhCCeeccccCCccCCeEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence            12246789999999999864432 1124677888889999999999999976643

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PLN02880 tyrosine decarboxylase

Probab=99.51  E-value=5.5e-12  Score=130.56  Aligned_cols=318  Identities=13%  Similarity=0.028  Sum_probs=177.8

Q ss_pred             ChHHHHHHHHHHhhCCCCC-------CEEEEeCChHHHHHHHHHHHHhcc-------C-CceEEEEccCccCCccccccc
Q 011777          137 HHAIADFAEALASKMPGNL-------KVVYFVNSGTEANELAMLMARLST-------G-NLGMIALRNAYHGGSSGTIGL  201 (477)
Q Consensus       137 ~~~~~~l~~~La~~~~~~~-------~~v~~~~sGseA~~~Al~~ar~~~-------~-~~~ii~~~~~yhG~~~~~~~~  201 (477)
                      .....++.++|+++++.+.       ..-+|++||||||..|+.+||...       + +..++.....-|-...-+...
T Consensus       121 ~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~  200 (490)
T PLN02880        121 TELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQI  200 (490)
T ss_pred             HHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHHH
Confidence            4556678888888875432       136789999999999999998642       1 122343344445544433333


Q ss_pred             ccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeEEEecccCCCCCeeeCCchhHHHHHH
Q 011777          202 TALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAGFIAETIQGVGGAVELAPGYLKLVYD  279 (477)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~  279 (477)
                      .+..       ...+..++.....+...+      .++|++.|++.  ....+.+|+..--....|.+-|    +++|.+
T Consensus       201 lGlg-------~~~v~~Vp~d~~~~~~md------~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp----l~eI~~  263 (490)
T PLN02880        201 AGIH-------PENCRLLKTDSSTNYALA------PELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP----LLELGK  263 (490)
T ss_pred             cCCC-------HHHEEEeecCCCcCCcCC------HHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc----HHHHHH
Confidence            2211       112334443211111222      47787777632  2234566666655555677777    999999


Q ss_pred             HHHHhCcEEEEcCcccCccCCCCCCccccccCC-Ccceeee--cccccCccceEEEEeCHH--HHHhhcccc----c---
Q 011777          280 IVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV-IPDIVTM--AKGIGNGLPLGAVVTTPE--IANVMAQKI----Q---  347 (477)
Q Consensus       280 l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv-~pDivt~--sK~lg~G~pig~v~~~~~--~~~~~~~~~----~---  347 (477)
                      +|++||+++++|.+|.|+-..- ..+-....|+ ..|.+++  -|.+...++.|+++.+..  +.+.+....    +   
T Consensus       264 i~~~~~iwlHVDaA~gg~~~~~-~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~  342 (490)
T PLN02880        264 IAKSNGMWFHVDAAYAGSACIC-PEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKAS  342 (490)
T ss_pred             HHHHcCCEEEEehhhHHHHHhC-HHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCccc
Confidence            9999999999999998763221 1111123454 5787775  499988899999988742  222221110    0   


Q ss_pred             --ccCC--------CCcHHHHHHHHHHHHhhchhhHHHHHH---HHHHHHHHHHHHHHHhCCCcee-eeccceeEEEEEe
Q 011777          348 --FNTF--------GGNPVCSAGGLAVLRVIDKERRQAHCA---DVGSHLLGRLRTLQERHDIIGD-VRGRGLMVGMELV  413 (477)
Q Consensus       348 --~~t~--------~~~~~~~aaa~a~l~~l~~~~~~~~~~---~~~~~l~~~L~~l~~~~~~~~~-v~g~g~~~~i~~~  413 (477)
                        ..++        .+..+.......+|+.+..+.+.++++   ++.+++.+.|++.    +...- .+....++.+.+.
T Consensus       343 ~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~----~~~el~~~~~~~iv~Fr~~  418 (490)
T PLN02880        343 QANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQD----SRFEVVTPRIFSLVCFRLV  418 (490)
T ss_pred             cccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEecCCceEEEEEEEe
Confidence              0011        111122333445566666666666666   6677776666542    22211 1223335555553


Q ss_pred             eCCCCCCccHHHHHHHHHHHHHcCceeeccCC--CCCEEEEeCCCCCc-HHHHHHHHHHHHHHHhh
Q 011777          414 TDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--HGNVFRIKPPMCFT-KDDADFLVDALDYSMSK  476 (477)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t-~e~i~~~l~~l~~~l~~  476 (477)
                      ...............+.+.|.+.|-+......  ...++|+++....| ++|++.+++.|.+...+
T Consensus       419 ~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~  484 (490)
T PLN02880        419 PPKNNEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASK  484 (490)
T ss_pred             CCCCChhhHHHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence            22111000122234677777777754433221  23579998755544 69999999999887654

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.50  E-value=5.9e-12  Score=128.31  Aligned_cols=164  Identities=20%  Similarity=0.181  Sum_probs=108.9

Q ss_pred             cccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCC
Q 011777          133 TIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP  212 (477)
Q Consensus       133 ~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  212 (477)
                      .++.++...+|+++|+++.+.  +..++++||+.|+.+++....  .+++.||+....|.+........         ..
T Consensus        64 sr~~~p~~~~Le~~lA~l~g~--~~av~~sSG~aAi~~al~all--~~Gd~Vv~~~~~y~~t~~~~~~~---------l~  130 (436)
T PRK07812         64 TRIMNPTQDVVEQRIAALEGG--VAALLLASGQAAETFAILNLA--GAGDHIVSSPRLYGGTYNLFHYT---------LP  130 (436)
T ss_pred             cCCCCchHHHHHHHHHHHhCC--CeEEEEccHHHHHHHHHHHHh--CCCCEEEEeCCcchHHHHHHHHH---------hh
Confidence            345578888999999999854  568899999999999986442  35678888777665432211110         01


Q ss_pred             CCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcC
Q 011777          213 QGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADE  292 (477)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  292 (477)
                      ..|+.....+++    .  |    +++++++++    +++++|++|.+.++.|.+.+    +++|.++|++||+++|+|+
T Consensus       131 ~~Gi~v~~vdd~----~--d----~e~l~~ai~----~~tklV~ie~~sNp~G~v~D----l~~I~~la~~~gi~liVD~  192 (436)
T PRK07812        131 KLGIEVSFVEDP----D--D----LDAWRAAVR----PNTKAFFAETISNPQIDVLD----IPGVAEVAHEAGVPLIVDN  192 (436)
T ss_pred             cCeEEEEEECCC----C--C----HHHHHHhCC----CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEEC
Confidence            113333222111    0  1    467777665    46789999999999998888    9999999999999999999


Q ss_pred             cccCccCCCCCCccccccCCCccee--eecccccC-ccceEEEEe
Q 011777          293 VQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-GLPLGAVVT  334 (477)
Q Consensus       293 v~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pig~v~~  334 (477)
                      ++.. +...      .......|++  +++|.++| |--+|.++.
T Consensus       193 t~a~-~~~~------~pl~~GaDivv~S~tK~lgg~G~~i~G~vv  230 (436)
T PRK07812        193 TIAT-PYLI------RPLEHGADIVVHSATKYLGGHGTAIAGVIV  230 (436)
T ss_pred             CCcc-cccC------CchhcCCCEEEEecccccCCCCCeEEEEEE
Confidence            8762 1111      1112235665  57799986 544554444

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.50  E-value=1.7e-11  Score=122.61  Aligned_cols=346  Identities=14%  Similarity=0.115  Sum_probs=183.7

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAML  173 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~  173 (477)
                      ....|||+.+-.++       ++..++-...+..+.-  ...-++...+|.+.++++++  .+.+++++||+.|...+..
T Consensus        36 ~~~v~iDLltDsgT-------~aMs~~q~a~~~~GDe--~yag~~s~~~lE~~va~~~G--~~~av~v~sGT~Al~ll~~  104 (450)
T TIGR02618        36 SEDVYIDLLTDSGT-------NAMSDKQWAGLMMGDE--AYAGSRNFYHLERTVRELYG--FKYVVPTHQGRGAENLLSQ  104 (450)
T ss_pred             cCceEEEcccCCCc-------HHHHHHHHHHhhhcch--hhcCCCcHHHHHHHHHHHHC--CCeEEEcCCHHHHHHHHHH
Confidence            34579999987764       4455541222222211  11235667899999999995  4789999999999886432


Q ss_pred             HHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCC---CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCC
Q 011777          174 MARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ---GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG  250 (477)
Q Consensus       174 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~  250 (477)
                         ...++.+.| ..+.|...+.......+. .+ .....   .+..   ...+....++      +++|+++|+..+..
T Consensus       105 ---l~l~pGDeV-psn~~f~Tt~ahIe~~Ga-v~-vDi~~dea~~~~---~~~p~~GniD------~~~Le~aI~~~~~~  169 (450)
T TIGR02618       105 ---IAIKPGDYV-PGNMYFTTTRYHQEKNGA-TF-VDIIIDEAHDAQ---LNIPFKGNVD------LKKLQKLIDEVGAD  169 (450)
T ss_pred             ---hCCCCcCEE-CCceeHHHHHHHHHhCCe-EE-Eeeecccccccc---cCCCCCCCcC------HHHHHHHhccccCc
Confidence               222333343 334443333322222111 00 00000   0000   1112222222      58899988743333


Q ss_pred             CeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCcc-----------CCCCCCccc-cccCCCcceee
Q 011777          251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG-----------RTGSHYWGF-ETQGVIPDIVT  318 (477)
Q Consensus       251 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfg-----------r~G~~~~~~-~~~gv~pDivt  318 (477)
                      +++.|.++-..+..|..+.+.+.+++|+++|++||+.||.|-.+. |+           +.+...+-+ ....-..|.++
T Consensus       170 ~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~-~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~  248 (450)
T TIGR02618       170 KIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRC-VENAYFIKEREQGYEDKSIAEILKEMMSYADGCT  248 (450)
T ss_pred             ccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccch-hhChhhhhcccccccCCCHHHHHHHHhccCcEEE
Confidence            455666655455443366788889999999999999999999876 31           111000000 00011346644


Q ss_pred             eccccc-CccceEEEEe--CHHHHHhhccc--cc--ccCCCC-cHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 011777          319 MAKGIG-NGLPLGAVVT--TPEIANVMAQK--IQ--FNTFGG-NPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRT  390 (477)
Q Consensus       319 ~sK~lg-~G~pig~v~~--~~~~~~~~~~~--~~--~~t~~~-~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~  390 (477)
                      + |+.- +|.|+|.+++  ++++.+.++..  ..  .-|+++ ..-.+.|...+|+...++...++.....++|.++|.+
T Consensus       249 ~-S~~Kd~~~~~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y~~~r~~~a~~La~~L~~  327 (450)
T TIGR02618       249 M-SGKKDCLVNIGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEYIEHRVKQVRYLGDKLKA  327 (450)
T ss_pred             E-eeccCCCCCCceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            4 4442 3446554444  67787776543  11  124444 1223334344565544555666666678888888877


Q ss_pred             HHHhCCCceeeeccceeEEEEEeeC----CCCCCccHHHHHHHHHHH-HHcCcee---ecc--CC--------C--CCEE
Q 011777          391 LQERHDIIGDVRGRGLMVGMELVTD----RKEKTPAKAETAVLFEKL-RELGVLV---GKG--GL--------H--GNVF  450 (477)
Q Consensus       391 l~~~~~~~~~v~g~g~~~~i~~~~~----~~~~~~~~~~~~~~~~~l-~~~Gv~v---~~~--~~--------~--~~~i  450 (477)
                      .  ..+++  .+..|..+.++...-    +....|    +..+.-.| ++-||-.   +..  +.        .  -..+
T Consensus       328 ~--Gvpv~--~p~ggh~V~vda~~~lph~~~~~~p----~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~  399 (450)
T TIGR02618       328 A--GVPIV--EPVGGHAVFLDARRFLPHIPQDQFP----AQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELV  399 (450)
T ss_pred             C--CCccc--CCCCcceEEEEhHHhCCCCChhhCh----HHHHHHHHHHHhCccEEeecceecccCCCCCcccCCcccee
Confidence            6  33332  234567777765431    111223    23333333 3445422   111  00        0  1467


Q ss_pred             EEeCCC-CCcHHHHHHHHHHHHHHHh
Q 011777          451 RIKPPM-CFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       451 Ri~p~~-~~t~e~i~~~l~~l~~~l~  475 (477)
                      |+..|- +.|.+++|...++|..+.+
T Consensus       400 rlaiprr~yt~~h~~~v~~~~~~~~~  425 (450)
T TIGR02618       400 RLTIPRRVYTYAHMDVVADGIIKLYK  425 (450)
T ss_pred             eeccccccccHhHHHHHHHHHHHHHh
Confidence            886554 4588999999999988765

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK04311 selenocysteine synthase; Provisional

Probab=99.49  E-value=1.5e-11  Score=125.81  Aligned_cols=338  Identities=15%  Similarity=0.104  Sum_probs=184.3

Q ss_pred             EEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccc-c---ccCChHHHHHHHHHHhhCCCCCCEEEEeCChH
Q 011777           90 LFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT-T---IYLHHAIADFAEALASKMPGNLKVVYFVNSGT  165 (477)
Q Consensus        90 ~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~-~---~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGs  165 (477)
                      ++...|..|.+..+..      .-++++.+++.+.+....... .   ....+....+++.++++++.  +.++++|||+
T Consensus        81 vinatg~v~~tNlg~s------~l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Ga--e~a~vv~sgt  152 (464)
T PRK04311         81 VINATGVVLHTNLGRA------LLSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGA--EDALVVNNNA  152 (464)
T ss_pred             eecCCccEEeccCCCC------CCCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCC--CeEEEECCHH
Confidence            4556666666654332      147899999999886542110 0   00123356888999998854  5688999999


Q ss_pred             HHHHHHHHHHHhccCCceEEEEccCcc--CCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHH
Q 011777          166 EANELAMLMARLSTGNLGMIALRNAYH--GGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDH  243 (477)
Q Consensus       166 eA~~~Al~~ar~~~~~~~ii~~~~~yh--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~  243 (477)
                      .|+..++...   .++++||+.++.+.  |.+......         ....|+..+.+...-  ..      ..++++++
T Consensus       153 aAl~l~l~~l---~~GdeVIvs~~e~~~~ggs~~i~~~---------~~~~G~~l~~v~~~~--~t------~~~dle~a  212 (464)
T PRK04311        153 AAVLLALNAL---AAGKEVIVSRGELVEIGGAFRIPDV---------MRQAGARLVEVGTTN--RT------HLRDYEQA  212 (464)
T ss_pred             HHHHHHHHHh---CCCCEEEEcchhhhhcCcchhhHHH---------HHHCCcEEEEECCCC--CC------CHHHHHHh
Confidence            9999888542   35667877665332  211110000         001233322221100  00      15788888


Q ss_pred             HhccCCCCeeEEEecccCCC--CC--eeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCC-----CCCccccccCCCc
Q 011777          244 IDFGTSGKVAGFIAETIQGV--GG--AVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTG-----SHYWGFETQGVIP  314 (477)
Q Consensus       244 i~~~~~~~~a~vi~epi~~~--~G--~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G-----~~~~~~~~~gv~p  314 (477)
                      |+    +++++|+++...+.  .|  ..++    +++|.++|++||+++|+|....-++-.+     ..+...+......
T Consensus       213 I~----~~TklV~~vh~sN~~i~G~~~~~d----l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~Ga  284 (464)
T PRK04311        213 IN----ENTALLLKVHTSNYRIEGFTKEVS----LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGV  284 (464)
T ss_pred             cC----ccCeEEEEEcCCCccccccCCcCC----HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCC
Confidence            86    45777777765442  23  2344    9999999999999999998432111111     0111112223457


Q ss_pred             ceeeec--ccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc-hh-hH------------HHHHH
Q 011777          315 DIVTMA--KGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID-KE-RR------------QAHCA  378 (477)
Q Consensus       315 Divt~s--K~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~-~~-~~------------~~~~~  378 (477)
                      |++++|  |.++|. ..|++++++++++.+......-.+...-...++..++|.... .+ .+            .++..
T Consensus       285 Div~fSg~K~LgGp-~~G~i~g~~~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~  363 (464)
T PRK04311        285 DLVTFSGDKLLGGP-QAGIIVGKKELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELR  363 (464)
T ss_pred             cEEEecCcccccCC-ceEEEEEcHHHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHH
Confidence            999887  999865 478999999998877632111122222333444444444221 11 11            24455


Q ss_pred             HHHHHHHHHHHHHHHh-C--CCcee--eecccee-------EEEEEeeCCCCCCccHHHHHHHHHHHHHc--CceeeccC
Q 011777          379 DVGSHLLGRLRTLQER-H--DIIGD--VRGRGLM-------VGMELVTDRKEKTPAKAETAVLFEKLREL--GVLVGKGG  444 (477)
Q Consensus       379 ~~~~~l~~~L~~l~~~-~--~~~~~--v~g~g~~-------~~i~~~~~~~~~~~~~~~~~~~~~~l~~~--Gv~v~~~~  444 (477)
                      ++.+.+.+.|...... .  .++.+  .-|-|.+       +.+.+..       .......+.+.|++-  .|+.+.  
T Consensus       364 ~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~-------~~~~~~~l~~~lr~~~~~i~~r~--  434 (464)
T PRK04311        364 ARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTP-------KDRSLEALAARLRLLPPPVIGRI--  434 (464)
T ss_pred             HHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeC-------CCCCHHHHHHHHhcCCCCEEEEE--
Confidence            5566666665543110 0  01111  0112222       1233321       112246677777763  355542  


Q ss_pred             CCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          445 LHGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       445 ~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                       ..+.+.+-+ -++.++|++.++++|.+++.
T Consensus       435 -~~~~~~ld~-r~~~~~~~~~~~~~~~~~~~  463 (464)
T PRK04311        435 -EDGRLLLDL-RTLEEEDEERLAAALLEALN  463 (464)
T ss_pred             -ECCEEEEEe-CcCCHHHHHHHHHHHHHHhh
Confidence             345666664 56688999999999998764

>PLN02590 probable tyrosine decarboxylase

Probab=99.47  E-value=4.1e-10  Score=116.94  Aligned_cols=317  Identities=13%  Similarity=0.037  Sum_probs=174.1

Q ss_pred             hHHHHHHHHHHhhCCCCC-------CEEEEeCChHHHHHHHHHHHHhccC-------Cce-EEEEccCccCCcccccccc
Q 011777          138 HAIADFAEALASKMPGNL-------KVVYFVNSGTEANELAMLMARLSTG-------NLG-MIALRNAYHGGSSGTIGLT  202 (477)
Q Consensus       138 ~~~~~l~~~La~~~~~~~-------~~v~~~~sGseA~~~Al~~ar~~~~-------~~~-ii~~~~~yhG~~~~~~~~~  202 (477)
                      ....++.++|+++++.+.       ..-+|++||||||..||.+||....       ..+ ++.....-|-+..-+....
T Consensus       170 ~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~il  249 (539)
T PLN02590        170 ELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACLIG  249 (539)
T ss_pred             HHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHHHc
Confidence            445677778888875332       2367899999999999999987421       122 3333333343332222222


Q ss_pred             cCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeEEEecccCCCCCeeeCCchhHHHHHHH
Q 011777          203 ALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDI  280 (477)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l  280 (477)
                      +       +....+..++........+  |    .++|++.|++.  ....+.+|+..--....|.+-|    |++|.++
T Consensus       250 G-------lg~~~vr~Vp~d~~~~~~m--d----~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp----l~~Ia~i  312 (539)
T PLN02590        250 G-------IHEENIRLLKTDSSTNYGM--P----PESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP----LVPLGNI  312 (539)
T ss_pred             C-------CCcccEEEEeCCCCCCCcC--C----HHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC----HHHHHHH
Confidence            1       1112344444321111112  2    47788777632  1234455665555555677777    9999999


Q ss_pred             HHHhCcEEEEcCcccCccCCCCCCccccccCC-Ccceeee--cccccCccceEEEEeCHH--HHHhhccc-----cc---
Q 011777          281 VRKAGGVCIADEVQTGFGRTGSHYWGFETQGV-IPDIVTM--AKGIGNGLPLGAVVTTPE--IANVMAQK-----IQ---  347 (477)
Q Consensus       281 ~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv-~pDivt~--sK~lg~G~pig~v~~~~~--~~~~~~~~-----~~---  347 (477)
                      |++||++|++|.+|.|+...-.. +..-..|+ ..|-+++  -|.+...++.|+++.+..  +.+.+...     ..   
T Consensus       313 ~~~~g~WlHVDaA~GG~al~~~~-~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~  391 (539)
T PLN02590        313 AKKYGIWLHVDAAYAGNACICPE-YRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSK  391 (539)
T ss_pred             HHHhCCeEEEecchhhhhhcChh-hHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcccc
Confidence            99999999999999887422101 00112344 3577765  499988899999988753  33322110     00   


Q ss_pred             ------cc--CC-CCcHHHHHHHHHHHHhhchhhHH---HHHHHHHHHHHHHHHHHHHhCCCceeee-ccceeEEEEEee
Q 011777          348 ------FN--TF-GGNPVCSAGGLAVLRVIDKERRQ---AHCADVGSHLLGRLRTLQERHDIIGDVR-GRGLMVGMELVT  414 (477)
Q Consensus       348 ------~~--t~-~~~~~~~aaa~a~l~~l~~~~~~---~~~~~~~~~l~~~L~~l~~~~~~~~~v~-g~g~~~~i~~~~  414 (477)
                            ..  +. .+-.+.......+|+.+..+.+.   ++..++.+++.+.|++    .+...-+. ..-.++.|.+..
T Consensus       392 ~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~----~~~fel~~~~~l~iVcFr~~~  467 (539)
T PLN02590        392 KDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQ----DPSFEVVTTRYFSLVCFRLAP  467 (539)
T ss_pred             cccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCeEEecCCceEEEEEEecC
Confidence                  00  11 11234445555666666555544   4444455566665544    33221111 122233444422


Q ss_pred             CCCCCCccHHHHHHHHHHHHHcCceeeccCC-C-CCEEEEeC-CCCCcHHHHHHHHHHHHHHHhh
Q 011777          415 DRKEKTPAKAETAVLFEKLRELGVLVGKGGL-H-GNVFRIKP-PMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~-~~~iRi~p-~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .............++.+.+.+.|.+...... . ..+||++. +..++++||+++++.|.+...+
T Consensus       468 ~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~  532 (539)
T PLN02590        468 VDGDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASK  532 (539)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence            1100000122346778888888865533221 1 24789865 4456899999999999887654

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.47  E-value=6.7e-11  Score=118.76  Aligned_cols=347  Identities=16%  Similarity=0.105  Sum_probs=181.2

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAML  173 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~  173 (477)
                      ....|||+.+-.++       +...+++...+..+.-.  ..-++...+|.+.++++++.  +.+++++||+.|+.++..
T Consensus        43 ~~~v~IDLlSDS~T-------~aMs~~q~a~~~vGDd~--Yagd~s~~~LE~~vAe~lG~--e~aV~v~sGTaAl~ll~~  111 (460)
T PRK13237         43 SEDVYIDLLTDSGT-------NAMSDRQWAGMMIGDEA--YAGSRNFYHLEETVQEYYGF--KHVVPTHQGRGAENLLSR  111 (460)
T ss_pred             cCcEEEECcccCCc-------hhccHHHHHHHhhcchh--hcCCCcHHHHHHHHHHHHCC--CeEEEeCCHHHHHHHHHH
Confidence            34579999988875       23333433333222111  12356678999999999954  679999999999998643


Q ss_pred             HHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCee
Q 011777          174 MARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA  253 (477)
Q Consensus       174 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a  253 (477)
                      +   ..++.++| ..+.+...+...+...+. .+ ......+........+....++      +++|+++|+..+..+++
T Consensus       112 l---~v~pGd~V-p~n~~f~Tt~ahI~~~Ga-~f-vDi~~d~a~~~~~~~p~tgnlD------~d~Le~~I~~~~~~~~~  179 (460)
T PRK13237        112 I---AIKPGQYV-PGNMYFTTTRYHQELNGG-IF-VDIIIDEAHDAQSDHPFKGNVD------LDKLQALIDEVGAENIA  179 (460)
T ss_pred             h---CCCCcCEE-CCccchHhhHHHHHhCCc-EE-EeeecccccccccCCCCCCCcC------HHHHHHHhccccCCccC
Confidence            2   22333343 222222222221211111 00 0000000000001112222222      58899988743334555


Q ss_pred             EEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCcc-------CCCCCCcccc------ccCCCcceeeec
Q 011777          254 GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG-------RTGSHYWGFE------TQGVIPDIVTMA  320 (477)
Q Consensus       254 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfg-------r~G~~~~~~~------~~gv~pDivt~s  320 (477)
                      .+.++-..+..|..+.+.+.+++|.++|++||+.||.|-++. +|       |.. .+++-.      ...-.-|+++||
T Consensus       180 lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra-~gna~fI~~re~-~y~~~~i~ei~~e~~s~aD~~t~S  257 (460)
T PRK13237        180 YICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRC-VENAYFIKEREE-GYQDKSIKEIVHEMFSYADGCTMS  257 (460)
T ss_pred             ceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcch-hcChhhhccccc-ccCCCcHhHHhhhccCcCcEEEEe
Confidence            555444334443366677889999999999999999999876 33       101 011111      011235777766


Q ss_pred             --ccccCccce-EEEEeC-HHHHHhhccc----ccccCCCCcHH-HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHH
Q 011777          321 --KGIGNGLPL-GAVVTT-PEIANVMAQK----IQFNTFGGNPV-CSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTL  391 (477)
Q Consensus       321 --K~lg~G~pi-g~v~~~-~~~~~~~~~~----~~~~t~~~~~~-~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l  391 (477)
                        |.++.  ++ |+++++ +++.+.++..    ....|+++-.- -+.|....|....++++.++..+..++|.+.|.+.
T Consensus       258 ~~K~~~~--~~GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~y~~~ri~~~~~l~~~L~~~  335 (460)
T PRK13237        258 GKKDCLV--NIGGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYEYIEHRVGQVRYLGEKLLAA  335 (460)
T ss_pred             CCCCCCC--CCceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhchHHHHHHHHHHHHHHHHHHHHC
Confidence              66653  33 677664 6677776643    12235555322 22232233444444566666666777888877664


Q ss_pred             HHhCCCceeeeccceeEEEEEeeC----CCCCCccHHHHHHHHHHH-HHcCceee---cc--CC--------C--CCEEE
Q 011777          392 QERHDIIGDVRGRGLMVGMELVTD----RKEKTPAKAETAVLFEKL-RELGVLVG---KG--GL--------H--GNVFR  451 (477)
Q Consensus       392 ~~~~~~~~~v~g~g~~~~i~~~~~----~~~~~~~~~~~~~~~~~l-~~~Gv~v~---~~--~~--------~--~~~iR  451 (477)
                        ..|++.  +..|.-+.++...-    +....|    +..+...| ++-||-..   ..  +.        .  -..+|
T Consensus       336 --Gvpv~~--p~ggH~v~vda~~~lph~~~~~~p----~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~r  407 (460)
T PRK13237        336 --GVPIVE--PVGGHAVFLDARRFLPHLPQDQFP----AQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVR  407 (460)
T ss_pred             --CCceec--CCCceEEEEEhHHhCCCCCcccCh----HHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceee
Confidence              233332  33454445543221    111223    23333333 33444221   11  00        0  14678


Q ss_pred             EeCCC-CCcHHHHHHHHHHHHHHHh
Q 011777          452 IKPPM-CFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       452 i~p~~-~~t~e~i~~~l~~l~~~l~  475 (477)
                      +..|- +.|.+++|...++|..+.+
T Consensus       408 laiprr~yt~~h~~~v~~~~~~~~~  432 (460)
T PRK13237        408 LTIPRRVYTYAHMDVVADSVIKLYK  432 (460)
T ss_pred             eccccccccHHHHHHHHHHHHHHHH
Confidence            86554 4588999999999988765

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.47  E-value=3.7e-11  Score=129.39  Aligned_cols=298  Identities=13%  Similarity=0.136  Sum_probs=178.0

Q ss_pred             HHHHHHHHHHhhCCCCCCEEEE-eCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccCCCCCCCC
Q 011777          139 AIADFAEALASKMPGNLKVVYF-VNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI  211 (477)
Q Consensus       139 ~~~~l~~~La~~~~~~~~~v~~-~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  211 (477)
                      ...+|.+.|+++++  ++.+-+ -+||+.+..++++..|.|      ++|++|++ ..+-||........          
T Consensus       544 ~i~elq~~l~eLtG--md~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLI-p~saHgtNpasa~~----------  610 (954)
T PRK12566        544 MIDELEAWLCAITG--FDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLI-PSSAHGTNPASAQM----------  610 (954)
T ss_pred             HHHHHHHHHHHHHC--CCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEe-cccccccCHHHHHH----------
Confidence            34688889999984  454444 458999998888887775      34555555 45667654433222          


Q ss_pred             CCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777          212 PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD  291 (477)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  291 (477)
                        .|+..+.++....+..+      +++|++.++.. .+++++|++...+..|+...    .+++|.++|+++|+++++|
T Consensus       611 --~GieVv~Vp~D~~G~iD------le~L~a~I~~~-~~~laaVmiT~Pnt~Gv~e~----~V~eI~~iah~~Galv~vD  677 (954)
T PRK12566        611 --AGMRVVIVECDPDGNVD------LDDLKAKAAAA-GDRLSCLMITYPSTHGVYEE----GIREICEVVHQHGGQVYMD  677 (954)
T ss_pred             --CCCEEEEeccCCCCCcC------HHHHHHHhhcc-CCCEEEEEEEecCcCceecc----hHHHHHHHHHHcCCEEEEE
Confidence              14444443332222222      68888888632 35788887766554444323    3899999999999999999


Q ss_pred             CcccCccCCCCCCccccc-cCCCcceeeec--cccc-----CccceEEEEeCHHHHHhhcccc-------------cccC
Q 011777          292 EVQTGFGRTGSHYWGFET-QGVIPDIVTMA--KGIG-----NGLPLGAVVTTPEIANVMAQKI-------------QFNT  350 (477)
Q Consensus       292 Ev~~gfgr~G~~~~~~~~-~gv~pDivt~s--K~lg-----~G~pig~v~~~~~~~~~~~~~~-------------~~~t  350 (477)
                      -++. .+..     .+.. -.+..|+++++  |.|+     ||.-+|.+.+++.+...+....             ....
T Consensus       678 gA~~-~a~~-----~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~  751 (954)
T PRK12566        678 GANL-NAQV-----GLARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAA  751 (954)
T ss_pred             eeCh-hhcc-----CCCChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeec
Confidence            9885 2211     1221 23456888776  9886     2456788777776665554210             1112


Q ss_pred             CCCcHHHHHHHHHHHHhhchhhHHH---HHHHHHHHHHHHHHHHHHhCCCceeeeccce---eEEEEEeeCCCCCCccHH
Q 011777          351 FGGNPVCSAGGLAVLRVIDKERRQA---HCADVGSHLLGRLRTLQERHDIIGDVRGRGL---MVGMELVTDRKEKTPAKA  424 (477)
Q Consensus       351 ~~~~~~~~aaa~a~l~~l~~~~~~~---~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~---~~~i~~~~~~~~~~~~~~  424 (477)
                      ..++.....++...++.+..+ +.+   ....+..|++++|.+   .++.... ...+.   -+.+++..-+  + ..+.
T Consensus       752 ~~gsa~~l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~---~~~v~~~-~~~~~~~hEfii~~~~l~--~-~~g~  823 (954)
T PRK12566        752 PWGSASILPISWMYIAMMGPQ-LADASEVAILSANYLANQLGG---AFPVLYR-GRNERVAHECILDLRPLK--A-QTGI  823 (954)
T ss_pred             ccchHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhHh---hCCCCcC-CCCCCeeeEEEEEccccc--c-ccCC
Confidence            233444445555556655544 322   123467788888866   2343331 11122   1223322111  0 1112


Q ss_pred             HHHHHHHHHHHcCceeeccC-CCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          425 ETAVLFEKLRELGVLVGKGG-LHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       425 ~~~~~~~~l~~~Gv~v~~~~-~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ...++.++|.+.|+...... ...+.+|++|.-..+++|||+++++|..+.++
T Consensus       824 ~~~dvakRL~d~Gihapt~~fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~e  876 (954)
T PRK12566        824 SEEDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESKAELDRFVEAMLSIRAE  876 (954)
T ss_pred             CHHHHHHHHHHCCcEEeEEeeccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHH
Confidence            24668889999998765321 12578999999999999999999999887654

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.45  E-value=8.5e-12  Score=125.26  Aligned_cols=306  Identities=21%  Similarity=0.203  Sum_probs=180.6

Q ss_pred             HHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCC
Q 011777          115 PDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGG  194 (477)
Q Consensus       115 p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~  194 (477)
                      .+..+++.+.++....+.   ..+...+++++++++++  .+.++.++|||.|+.+|++.. ...++++||+..-+|+..
T Consensus         5 ~e~~~~v~~~l~s~~~~~---~g~~~~~fE~~~a~~~g--~~~~~~~~sgt~Al~~al~~l-~~~~gdeVi~p~~t~~~~   78 (363)
T PF01041_consen    5 EEEIDAVLEVLRSGWLST---YGPYVEEFEKEFAEYFG--VKYAVAVSSGTSALHLALRAL-GLGPGDEVIVPAYTFPAT   78 (363)
T ss_dssp             HHHHHHHHHHHHHTCCSS---SSHHHHHHHHHHHHHHT--SSEEEEESSHHHHHHHHHHHT-TGGTTSEEEEESSS-THH
T ss_pred             HHHHHHHHHHHHhCCccC---CCHHHHHHHHHHHHHhC--CCeEEEeCChhHHHHHHHHhc-CCCcCceEecCCCcchHH
Confidence            456677777776643221   15778999999999995  478999999999999999964 345678999988888776


Q ss_pred             cccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhH
Q 011777          195 SSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYL  274 (477)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l  274 (477)
                      .......+..+.           .+.+.   ...++.|    .++++++|+    +++++|++-...|.   ...    +
T Consensus        79 ~~ai~~~G~~pv-----------~~Di~---~~~~~id----~~~~~~~i~----~~t~ai~~~h~~G~---~~d----~  129 (363)
T PF01041_consen   79 ASAILWAGAEPV-----------FVDID---PETLNID----PEALEKAIT----PKTKAILVVHLFGN---PAD----M  129 (363)
T ss_dssp             HHHHHHTT-EEE-----------EE-BE---TTTSSB-----HHHHHHHHH----TTEEEEEEE-GGGB----------H
T ss_pred             HHHHHHhccEEE-----------EEecc---CCcCCcC----HHHHHHHhc----cCccEEEEecCCCC---ccc----H
Confidence            665555543221           11110   0112222    488999987    56788888776653   223    8


Q ss_pred             HHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec----ccccCccceEEEEeC-HHHHHhhcccc---
Q 011777          275 KLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA----KGIGNGLPLGAVVTT-PEIANVMAQKI---  346 (477)
Q Consensus       275 ~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pig~v~~~-~~~~~~~~~~~---  346 (477)
                      .+|.++|++||++||.|-+|+ +|-   . +.-...|-.-|+.+||    |.+..|-. |+|+++ +++.+.++...   
T Consensus       130 ~~i~~~~~~~~i~lIeD~a~a-~g~---~-~~g~~~G~~gd~~~fSf~~~K~i~~geG-G~v~~~~~~~~~~~~~~~~~g  203 (363)
T PF01041_consen  130 DAIRAIARKHGIPLIEDAAQA-FGA---R-YKGRPVGSFGDIAIFSFHPTKIITTGEG-GAVVTNDPELAERARALRNHG  203 (363)
T ss_dssp             HHHHHHHHHTT-EEEEE-TTT-TT----E-ETTEETTSSSSEEEEESSTTSSS-SSS--EEEEESTHHHHHHHHHHTBTT
T ss_pred             HHHHHHHHHcCCcEEEccccc-cCc---e-eCCEeccCCCCceEecCCCCCCCcCCCC-eeEEecHHHHHHHhhhhhccC
Confidence            999999999999999999998 431   1 1112234445888776    99873211 888886 55555554321   


Q ss_pred             --------------cccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCcee---eecc--cee
Q 011777          347 --------------QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGD---VRGR--GLM  407 (477)
Q Consensus       347 --------------~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~---v~g~--g~~  407 (477)
                                    .+..+..+.+..+.+++-|+.+  +...++-+++.+++.+.|..+    +.+..   ..+.  ..+
T Consensus       204 ~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L--~~~~~~R~~~a~~y~~~L~~~----~~~~~~~~~~~~~~~~~  277 (363)
T PF01041_consen  204 RSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRL--DEIIARRRENAQRYREALAGI----PGIKPPPIPDGAERSSY  277 (363)
T ss_dssp             EETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHTTG----TTEEEEGCGTTTEEBCE
T ss_pred             cCccccccccccccCCcccccHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhcC----CCccccccccccccccc
Confidence                          1223445677777777777754  334455555666666665554    32211   1111  122


Q ss_pred             EEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--------C------------------CCEEEEeCCCCCcHH
Q 011777          408 VGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--------H------------------GNVFRIKPPMCFTKD  461 (477)
Q Consensus       408 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--------~------------------~~~iRi~p~~~~t~e  461 (477)
                      +.+.+.-+...  .  ...+.+.+.|.++||-+.+...        +                  ...|.+-.....+++
T Consensus       278 ~~f~i~~~~~~--~--~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~e  353 (363)
T PF01041_consen  278 YRFPIRLPDEA--L--ADRDELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEE  353 (363)
T ss_dssp             SSEEEEETCCG--C--STHHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHH
T ss_pred             ccccccccccc--c--chHHHHHHHHHHCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHH
Confidence            22222211110  0  1256789999999998765421        0                  023445444557899


Q ss_pred             HHHHHHHHHH
Q 011777          462 DADFLVDALD  471 (477)
Q Consensus       462 ~i~~~l~~l~  471 (477)
                      |+++.++.|+
T Consensus       354 dv~~I~~~ir  363 (363)
T PF01041_consen  354 DVDYIAEAIR  363 (363)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHhhccC
Confidence            9999888774

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.45  E-value=5e-11  Score=117.28  Aligned_cols=312  Identities=20%  Similarity=0.196  Sum_probs=186.0

Q ss_pred             HHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCC
Q 011777          115 PDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGG  194 (477)
Q Consensus       115 p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~  194 (477)
                      .+..+++.+.++......    -+...++.++++++++.  +.++.++|||.|+.+|++..- ..+++.||+..-+|-..
T Consensus        15 ~~e~~~v~~vl~sg~i~~----G~~v~~FE~~~ae~~G~--k~ava~~sgT~AL~laL~al~-ig~GDeVI~ps~TfvAT   87 (374)
T COG0399          15 EEELAAVQEVLKSGWLTG----GPFVRRFEQAFAEYLGV--KYAVAVSSGTAALHLALLALA-IGPGDEVIVPSFTFVAT   87 (374)
T ss_pred             hHHHHHHHHHHHcCCeec----ChHHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHhcC-CCCCCEEEecCCchHHH
Confidence            466777777777654332    36678999999999955  689999999999999998443 56778888877777655


Q ss_pred             cccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhH
Q 011777          195 SSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYL  274 (477)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l  274 (477)
                      ....+..+..+.+           +.+.   ...++.|    .+.+|+.|+    +++++||.-...|.   ...    +
T Consensus        88 an~i~~~Ga~PVF-----------vDid---~~T~nid----~~~ie~aIt----~~tKAIipVhl~G~---~~d----m  138 (374)
T COG0399          88 ANAVLLVGAKPVF-----------VDID---PDTLNID----PDLIEAAIT----PRTKAIIPVHLAGQ---PCD----M  138 (374)
T ss_pred             HHHHHHcCCeEEE-----------EecC---CcccCCC----HHHHHHHcc----cCCeEEEEehhccC---CCC----H
Confidence            5544444433221           1110   1112222    488999987    45888887666553   233    8


Q ss_pred             HHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec----ccccCccceEEEEeC-HHHHHhhccc-ccc
Q 011777          275 KLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA----KGIGNGLPLGAVVTT-PEIANVMAQK-IQF  348 (477)
Q Consensus       275 ~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pig~v~~~-~~~~~~~~~~-~~~  348 (477)
                      ++|.++|++||++||.|..|+ +|-+    +.-..-|-.-|+.+||    |.++.| --|+++++ +++.+.++.. .|+
T Consensus       139 ~~i~~la~~~~l~vIEDaAqa-~Ga~----y~gk~vGt~Gd~~~fSF~~~K~ittg-EGGav~tnd~ela~k~~~lr~hG  212 (374)
T COG0399         139 DAIMALAKRHGLPVIEDAAQA-HGAT----YKGKKVGSFGDIGAFSFHATKNLTTG-EGGAVVTNDEELAEKARSLRNHG  212 (374)
T ss_pred             HHHHHHHHHcCCeEEEEcchh-ccCe----ecCcccccccceEEEEecCCCCcccc-CceEEEeCCHHHHHHHHHHHHhC
Confidence            999999999999999999997 5421    1112334455777776    999853 33888886 5566665432 111


Q ss_pred             c---------------CCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc-ceeEEEEE
Q 011777          349 N---------------TFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGR-GLMVGMEL  412 (477)
Q Consensus       349 ~---------------t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-g~~~~i~~  412 (477)
                      -               .+.-+-+.++.+++-|+.+  +++.++-+++.++..+.|+++.. ........+. ..+..+.+
T Consensus       213 ~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l--~~~~~~R~~~a~~Y~~~l~~~~~-~~~p~~~~~~~~~~~~~~i  289 (374)
T COG0399         213 LSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERL--DEINERRREIAQIYAEALKGLPG-ITLPPEPDGAVHAWHLYTI  289 (374)
T ss_pred             cCCCccccceeeecccccCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-ccccCCCCCceeeeeeeEE
Confidence            1               1122344555555555543  44555555666666666655421 1111111111 11211111


Q ss_pred             eeCCCCCCccHHHHHHHHHHHHHcCce----eecc---------C-----C-------CCCEEEEeCCCCCcHHHHHHHH
Q 011777          413 VTDRKEKTPAKAETAVLFEKLRELGVL----VGKG---------G-----L-------HGNVFRIKPPMCFTKDDADFLV  467 (477)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~----v~~~---------~-----~-------~~~~iRi~p~~~~t~e~i~~~l  467 (477)
                      .-+..     ...-+.+.+.|.++||.    ..|.         +     .       ....+.+=..-..+++|+++.+
T Consensus       290 ~~~~~-----~~~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~  364 (374)
T COG0399         290 LVDEE-----GISRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVI  364 (374)
T ss_pred             EecCC-----CCCHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHH
Confidence            11110     12246788899999654    3331         0     0       0134555333446899999999


Q ss_pred             HHHHHHHhh
Q 011777          468 DALDYSMSK  476 (477)
Q Consensus       468 ~~l~~~l~~  476 (477)
                      +.|.+++.+
T Consensus       365 ~~l~~~~~~  373 (374)
T COG0399         365 EALKEVLGS  373 (374)
T ss_pred             HHHHHHhcc
Confidence            999998864

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.42  E-value=3.3e-11  Score=120.83  Aligned_cols=284  Identities=19%  Similarity=0.173  Sum_probs=165.3

Q ss_pred             ccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCC
Q 011777          132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI  211 (477)
Q Consensus       132 ~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  211 (477)
                      ++++.+|...+|+++++++.+.  +.++.++||+.|+.+++...  ..++++||+....|.+.........         
T Consensus        58 Y~r~~~P~~~~lE~~la~leg~--~~av~~sSG~aAi~~al~al--l~~GD~Vl~~~~~yg~t~~~~~~~~---------  124 (384)
T PRK06434         58 YTRWGNPTVQAFEEKYAVLENA--EHALSFSSGMGAITSAILSL--IKKGKRILSISDLYGQTFYFFNKVL---------  124 (384)
T ss_pred             eeCCCChhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHH--hCCCCEEEEecCccchHHHHHHHHH---------
Confidence            4455688899999999999854  56889999999999999754  2356788887666654433221110         


Q ss_pred             CCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777          212 PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD  291 (477)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  291 (477)
                      ...|+....++.      ++     .+.++  +.   ++++++|++|.+.++.+.+.+    +++|.++|+++|  +++|
T Consensus       125 ~~~Gi~v~fvd~------~~-----~~~~~--l~---~~~tklv~~e~~snpt~~v~D----i~~I~~la~~~~--lvVD  182 (384)
T PRK06434        125 KTLGIHVDYIDT------DR-----LNSLD--FD---PSNYDLIYAESITNPTLKVPD----IKNVSSFCHEND--VIVD  182 (384)
T ss_pred             HhcCcEEEEECC------CC-----hhhee--ec---CCCeeEEEEEcCCCCCceeec----HHHHHHHHHHcC--eEEE
Confidence            011222221111      00     01222  22   346889999998888876666    999999999998  4569


Q ss_pred             CcccCccCCCCCCccccccCCCcceeeec--ccccC-c-cceEEEEe-CHHHHHhhcccccccCCCCcHHHHHHHHHHHH
Q 011777          292 EVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGN-G-LPLGAVVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLR  366 (477)
Q Consensus       292 Ev~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~-G-~pig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~  366 (477)
                      .++.. ...+      ...+...|++++|  |.++| | .-.|++++ ++++.+.+...........+++.++.++.-|+
T Consensus       183 ~t~~s-~~~~------~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~  255 (384)
T PRK06434        183 ATFAS-PYNQ------NPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLK  255 (384)
T ss_pred             CCCCC-cccC------CchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCC
Confidence            98631 1122      2234457888765  99986 3 44566766 45566655432211223345666666555554


Q ss_pred             hhchhhHHHHHHHHHHHHHHHHHHHHHhCCCcee------------eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHH
Q 011777          367 VIDKERRQAHCADVGSHLLGRLRTLQERHDIIGD------------VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR  434 (477)
Q Consensus       367 ~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~  434 (477)
                      .+  +...++..++...+.+.|.    .+|.+..            .+|.|.|+.+++..        .....++.+.|.
T Consensus       256 tL--~~R~~r~~~~a~~~a~~L~----~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~--------~~~~~~f~~~l~  321 (384)
T PRK06434        256 TL--GLRMEKHNKNGMELARFLR----DSKKISNVYYPDTEIGKKVLRGFGGMLSFELRS--------MEDVHKFIRNLE  321 (384)
T ss_pred             cH--HHHHHHHHHHHHHHHHHHH----cCCCccEEECCChHHHHHhcCCCCceEEEEECC--------HHHHHHHHHhCC
Confidence            43  3344555555555555554    3443322            23668888888831        122344555443


Q ss_pred             H--cCcee--------ecc---------------CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          435 E--LGVLV--------GKG---------------GLHGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       435 ~--~Gv~v--------~~~---------------~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      =  .++-.        .|.               |...+.|||+..+    ||++.+++-|++++.
T Consensus       322 l~~~~~slG~~~sl~~~p~~~~h~~~~~e~~~~~gi~~~liRlsvGl----Ed~~dLi~dl~~Al~  383 (384)
T PRK06434        322 IPMVAASLGGVESLITLPVETSHSSLSPEERERLGISDNLVRFSIGI----EDIDDLIKDIENALS  383 (384)
T ss_pred             cceEccCCCCCCeeeECCCccccccCCHHHHHhcCCCcCeEEEEeCc----CCHHHHHHHHHHHhc
Confidence            1  11111        111               1124679997665    466667777777764

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.42  E-value=6.8e-11  Score=120.75  Aligned_cols=332  Identities=16%  Similarity=0.133  Sum_probs=176.7

Q ss_pred             EEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccc---cc-ccCChHHHHHHHHHHhhCCCCCCEEEEeCChH
Q 011777           90 LFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA---TT-IYLHHAIADFAEALASKMPGNLKVVYFVNSGT  165 (477)
Q Consensus        90 ~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~---~~-~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGs  165 (477)
                      ++...|..|.+..+..      .-++++++++.+.+......   .. ....+....+++.|+++++.  +..++++||+
T Consensus        76 vinatg~v~~tNlg~s------~l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~ga--e~alvv~sg~  147 (454)
T TIGR00474        76 VINATGVVLHTNLGRA------PLAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGA--EDALVVNNNA  147 (454)
T ss_pred             eeCCCCcEEeccCCCC------CCCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCC--CcEEEECCHH
Confidence            3455666666654321      25799999999988754210   00 01123457889999999865  4567889999


Q ss_pred             HHHHHHHHHHHhccCCceEEEEccCc---cCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHH
Q 011777          166 EANELAMLMARLSTGNLGMIALRNAY---HGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQD  242 (477)
Q Consensus       166 eA~~~Al~~ar~~~~~~~ii~~~~~y---hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~  242 (477)
                      .|+.+++..   ..+++.||+.++.+   .|........          ...|+....++..  .. . +    .+++++
T Consensus       148 aAi~l~l~~---l~~GdeVIvs~~e~v~~ggs~~i~~~~----------~~~G~~~~~v~~~--~~-~-~----l~dle~  206 (454)
T TIGR00474       148 AAVLLALNT---LAKGKEVIVSRGELVEIGGSFRIPDVM----------EQSGAKLVEVGTT--NR-T-H----LKDYED  206 (454)
T ss_pred             HHHHHHHHH---hCCcCEEEECCChhhhhcchhhHHHHH----------HHcCCEEEEeCCC--CC-C-C----HHHHHH
Confidence            999888853   23566777766553   2211110000          0113333222110  00 0 1    477888


Q ss_pred             HHhccCCCCeeEEEecccCCC--CC--eeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCC-----CCCccccccCCC
Q 011777          243 HIDFGTSGKVAGFIAETIQGV--GG--AVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTG-----SHYWGFETQGVI  313 (477)
Q Consensus       243 ~i~~~~~~~~a~vi~epi~~~--~G--~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G-----~~~~~~~~~gv~  313 (477)
                      +|+    +++++|+++...+.  .|  .+++    +++|.++|++||+++|+|....-++-.+     ..+...+.....
T Consensus       207 aI~----~~T~lv~~~h~sN~~~~G~~~~~d----l~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~G  278 (454)
T TIGR00474       207 AIT----ENTALLLKVHTSNYRIVGFTEEVS----IAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAG  278 (454)
T ss_pred             hcC----cCCEEEEEEccCcccccCCCCCCC----HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcC
Confidence            775    45777777765443  34  2455    9999999999999999996421111111     011111222345


Q ss_pred             cceeeec--ccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch-h-hH------------HHHH
Q 011777          314 PDIVTMA--KGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK-E-RR------------QAHC  377 (477)
Q Consensus       314 pDivt~s--K~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~-~-~~------------~~~~  377 (477)
                      .|++++|  |.++|. ..|++++++++++.+......-.+...-+..++..+++...-. + .+            .++.
T Consensus       279 aDiv~fSg~K~LgGp-~~G~i~g~~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~  357 (454)
T TIGR00474       279 VDLVTFSGDKLLGGP-QAGIIVGKKELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEEL  357 (454)
T ss_pred             CCEEEecCccccCCC-eEEEEEECHHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHH
Confidence            7999998  999764 3689999999887665321111111122223333344432211 1 11            2244


Q ss_pred             HHHHHHHHHHHHHHHH-hC--CCceee--ecccee-------EEEEEeeCCCCCCccHHHHHHHHHHHHHcC--ceeecc
Q 011777          378 ADVGSHLLGRLRTLQE-RH--DIIGDV--RGRGLM-------VGMELVTDRKEKTPAKAETAVLFEKLRELG--VLVGKG  443 (477)
Q Consensus       378 ~~~~~~l~~~L~~l~~-~~--~~~~~v--~g~g~~-------~~i~~~~~~~~~~~~~~~~~~~~~~l~~~G--v~v~~~  443 (477)
                      .++...+.+.|.+... ..  .++.+.  -|-|.+       +.+.+..       .......+.+.|++..  |+.+  
T Consensus       358 ~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~-------~~~~~~~l~~~lr~~~~~ii~r--  428 (454)
T TIGR00474       358 RARAERLAKRLKAALGPGFELEIVPGLSQVGGGSLPDERLPSYAVTLTP-------DGLSAEKLEARLRELPPPIIGR--  428 (454)
T ss_pred             HHHHHHHHHHHHhhccCCceEEEEEcCCcccCCCCcCCCCCeEEEEEec-------CCCCHHHHHHHHhcCCCCEEEE--
Confidence            5556666666655321 00  011110  112222       2233321       1122466777777654  4444  


Q ss_pred             CCCCCEEEEeCCCCCcHHHHHHHHHHH
Q 011777          444 GLHGNVFRIKPPMCFTKDDADFLVDAL  470 (477)
Q Consensus       444 ~~~~~~iRi~p~~~~t~e~i~~~l~~l  470 (477)
                       ...+.+.+-+ -++.++|++.++++|
T Consensus       429 -~~~~~~~ld~-r~~~~~~~~~~~~~~  453 (454)
T TIGR00474       429 -IEDDRFLLDL-RTLLEDEEELLIEAL  453 (454)
T ss_pred             -EECCEEEEEe-CcCCHHHHHHHHHHh
Confidence             2345666664 456788888888765

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.41  E-value=5.3e-11  Score=121.41  Aligned_cols=165  Identities=18%  Similarity=0.153  Sum_probs=107.5

Q ss_pred             ccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCC
Q 011777          132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI  211 (477)
Q Consensus       132 ~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  211 (477)
                      +.+..++....++++++++.+.  +..++++||+.|+.+++...  ..++++||+....|++.........         
T Consensus        63 Y~r~~~pt~~~le~~la~l~g~--~~~v~fsSG~~Ai~~al~~l--l~~Gd~VI~~~~~y~~t~~~~~~~l---------  129 (437)
T PRK05613         63 YSRLTNPTVEALENRIASLEGG--VHAVAFASGQAAETAAILNL--AGAGDHIVTSPRLYGGTETLFLVTL---------  129 (437)
T ss_pred             eeCccChHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHh--cCCCCEEEECCCccHHHHHHHHHHH---------
Confidence            3445678899999999999865  57788899999999888644  2356778887777766522110100         


Q ss_pred             CCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777          212 PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD  291 (477)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  291 (477)
                      ...|+....++++    .  |    .++++++++    +++++|++|...++.|.+.+    +++|.++|+++|+++|+|
T Consensus       130 ~~~Gi~v~~vd~~----~--d----~e~l~~~l~----~~tk~V~~e~~~Np~~~v~d----i~~I~~la~~~gi~livD  191 (437)
T PRK05613        130 NRLGIEVTFVENP----D--D----PESWQAAVQ----PNTKAFFGETFANPQADVLD----IPAVAEVAHRNQVPLIVD  191 (437)
T ss_pred             HhcCeEEEEECCC----C--C----HHHHHHhCC----ccCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCeEEEE
Confidence            0113333222211    0  1    477888776    45778888887777777777    999999999999999999


Q ss_pred             CcccCccCCCCCCccccccCCCcceeee--cccccC-ccceEEEEe
Q 011777          292 EVQTGFGRTGSHYWGFETQGVIPDIVTM--AKGIGN-GLPLGAVVT  334 (477)
Q Consensus       292 Ev~~gfgr~G~~~~~~~~~gv~pDivt~--sK~lg~-G~pig~v~~  334 (477)
                      .+++. +.    ......+|  .|++++  .|.++| |--+|.+++
T Consensus       192 ~t~a~-g~----~~~p~~~G--aDivv~S~~K~l~G~gd~~gG~vv  230 (437)
T PRK05613        192 NTIAT-AA----LVRPLELG--ADVVVASLTKFYTGNGSGLGGVLI  230 (437)
T ss_pred             CCCcc-cc----ccChHHhC--CCEEEeeccceecCCCcceeEEEE
Confidence            99852 21    11111234  477765  599886 555554444

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.41  E-value=2.4e-12  Score=125.47  Aligned_cols=227  Identities=11%  Similarity=0.055  Sum_probs=127.6

Q ss_pred             CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCC
Q 011777          136 LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGE  215 (477)
Q Consensus       136 ~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~  215 (477)
                      +.....++.+++++.++.+ +.+++++|+++|+..++....  .++++|++.+++|.....+. ...+            
T Consensus        57 ~~g~i~~~~~~~A~~~ga~-~~~~~~~Gst~a~~~~l~al~--~~gd~Vlv~~~~h~s~~~~~-~~~g------------  120 (294)
T cd00615          57 PTGPIKEAQELAARAFGAK-HTFFLVNGTSSSNKAVILAVC--GPGDKILIDRNCHKSVINGL-VLSG------------  120 (294)
T ss_pred             CChHHHHHHHHHHHHhCCC-CEEEEcCcHHHHHHHHHHHcC--CCCCEEEEeCCchHHHHHHH-HHCC------------
Confidence            4556788888899888653 344459999999999887553  36678888877765543322 2221            


Q ss_pred             eeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeE-EEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcc
Q 011777          216 IHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAG-FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQ  294 (477)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~-vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~  294 (477)
                      ...+..+......++.......++++++++..  .++++ +++.|  +..|.+.+    +++|.++|++||+++|+||+|
T Consensus       121 ~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~--~~~k~v~l~~p--~~~G~~~d----l~~I~~~~~~~g~~livDeA~  192 (294)
T cd00615         121 AVPVYLKPERNPYYGIAGGIPPETFKKALIEH--PDAKAAVITNP--TYYGICYN----LRKIVEEAHHRGLPVLVDEAH  192 (294)
T ss_pred             CEEEEecCccCcccCcCCCCCHHHHHHHHHhC--CCceEEEEECC--CCCCEecC----HHHHHHHHHhcCCeEEEECcc
Confidence            11111111100000000000157888887631  24554 44445  34676666    899999999999999999998


Q ss_pred             cCc-cCCCCCCccccccCCCccee--eecccccCccceE-EEEeCHHHH--Hhhcc-cccccCCCCcHHHHHHHHHHHHh
Q 011777          295 TGF-GRTGSHYWGFETQGVIPDIV--TMAKGIGNGLPLG-AVVTTPEIA--NVMAQ-KIQFNTFGGNPVCSAGGLAVLRV  367 (477)
Q Consensus       295 ~gf-gr~G~~~~~~~~~gv~pDiv--t~sK~lg~G~pig-~v~~~~~~~--~~~~~-~~~~~t~~~~~~~~aaa~a~l~~  367 (477)
                      ... ...+ . +.........|++  +++|.++ |++.| ++..+.+..  +.+.. .....|.+.+.+.+++..++++.
T Consensus       193 ~~~~~~~~-~-~~~~~~~~~~div~~S~hK~l~-g~~~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~  269 (294)
T cd00615         193 GAHFRFHP-I-LPSSAAMAGADIVVQSTHKTLP-ALTQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAM  269 (294)
T ss_pred             hhhhccCc-c-cCcchhhcCCcEEEEchhcccc-hHhHHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHH
Confidence            742 2222 1 1111122245666  5679874 45443 333433311  11211 11223445666777777777776


Q ss_pred             hch--hhHHHHHHHHHHHHHHHHH
Q 011777          368 IDK--ERRQAHCADVGSHLLGRLR  389 (477)
Q Consensus       368 l~~--~~~~~~~~~~~~~l~~~L~  389 (477)
                      +..  +++.++..++.++++++|+
T Consensus       270 ~~~~g~~~~~~~~~~~~~~r~~l~  293 (294)
T cd00615         270 MALEGKELVEELIELALYARQEIN  293 (294)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHh
Confidence            643  3466667777777777654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.39  E-value=2.5e-11  Score=115.39  Aligned_cols=189  Identities=22%  Similarity=0.197  Sum_probs=127.3

Q ss_pred             CCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEcc
Q 011777          110 CGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRN  189 (477)
Q Consensus       110 lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~  189 (477)
                      +.+.+++=.+++- +++...+.+++..+|....|.++++.+-++ . -.+.+.||..|+..|+.....  .++.||+-..
T Consensus        35 y~F~d~~haa~lF-~l~~~G~iYsRi~NPT~~vlE~RiAaLEGG-~-aa~a~aSG~AA~~~ai~~la~--aGD~iVss~~  109 (426)
T COG2873          35 YVFDDTDHAAALF-GLKEPGNIYTRIMNPTTDVLEERIAALEGG-V-AALAVASGQAAITYAILNLAG--AGDNIVSSSK  109 (426)
T ss_pred             eecCCHHHHHHHh-CCCcCCceeeeccCchHHHHHHHHHHhhcc-h-hhhhhccchHHHHHHHHHhcc--CCCeeEeecc
Confidence            3455544333322 234444555667789999999999988654 2 356789999999998875432  5678888766


Q ss_pred             CccCCcccccccccCCCCCCCCCCCCe--eeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCee
Q 011777          190 AYHGGSSGTIGLTALNTWKYPIPQGEI--HHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAV  267 (477)
Q Consensus       190 ~yhG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~  267 (477)
                      -|-|. ...++.+-        +..|+  .++...+             .+.+++.|+    +++++|.+|.+-|+.+.+
T Consensus       110 LYGGT-~~lf~~tl--------~~~Gi~v~fvd~~d-------------~~~~~~aI~----~nTkavf~EtigNP~~~v  163 (426)
T COG2873         110 LYGGT-YNLFSHTL--------KRLGIEVRFVDPDD-------------PENFEAAID----ENTKAVFAETIGNPGLDV  163 (426)
T ss_pred             ccCch-HHHHHHHH--------HhcCcEEEEeCCCC-------------HHHHHHHhC----cccceEEEEeccCCCccc
Confidence            66443 33222221        11233  2332111             488898887    689999999999999888


Q ss_pred             eCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccC-ccceEEEEeCHHHHH
Q 011777          268 ELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-GLPLGAVVTTPEIAN  340 (477)
Q Consensus       268 ~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pig~v~~~~~~~~  340 (477)
                      +.    +++|.++|++||+++|+|...+.       ++-+.-.+.-.|||  +++|-+|| |--||.+++...-.+
T Consensus       164 ~D----ie~ia~iAh~~gvpliVDNT~at-------pyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FD  228 (426)
T COG2873         164 LD----IEAIAEIAHRHGVPLIVDNTFAT-------PYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFD  228 (426)
T ss_pred             cC----HHHHHHHHHHcCCcEEEecCCCc-------ceecchhhcCCCEEEEeecccccCCccccceEEEeCCccc
Confidence            77    99999999999999999987652       23333344456777  57899998 888887776544333

>PLN02263 serine decarboxylase

Probab=99.39  E-value=9.3e-10  Score=111.55  Aligned_cols=288  Identities=19%  Similarity=0.134  Sum_probs=171.2

Q ss_pred             hHHHHHHHHHHhhCCCCCC--EEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCC
Q 011777          138 HAIADFAEALASKMPGNLK--VVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGE  215 (477)
Q Consensus       138 ~~~~~l~~~La~~~~~~~~--~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~  215 (477)
                      +...++.++++++++.+.+  .-++|+||||||..|+..||.+.++ .+++..-.-|-...-+....+.          .
T Consensus       133 ~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~-~vvy~S~~aH~Sv~KAa~llgi----------~  201 (470)
T PLN02263        133 QFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPD-GILYASRESHYSVFKAARMYRM----------E  201 (470)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCC-cEEEEcCCccHHHHHHHHhcCC----------c
Confidence            4456788888888865332  4689999999999999999986543 3555555555443333333221          2


Q ss_pred             eeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCc-----EEEE
Q 011777          216 IHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGG-----VCIA  290 (477)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gi-----llI~  290 (477)
                      +..++..  .....+      .++|++.|.... ..+.+|+..--.-+.|.+-|    +++|.++|++||+     +|++
T Consensus       202 ~~~Vp~d--~~g~mD------~~aL~~aI~~d~-~~P~iVvataGTT~~GAiDp----i~eIa~i~~~~g~~~~~iwlHV  268 (470)
T PLN02263        202 CVKVDTL--VSGEID------CADFKAKLLANK-DKPAIINVNIGTTVKGAVDD----LDLVIKTLEECGFSQDRFYIHC  268 (470)
T ss_pred             ceEeccC--CCCcCc------HHHHHHHHHhCC-CCcEEEEEEecCCCCcCCCC----HHHHHHHHHHcCCccCCeeEEE
Confidence            2233221  112222      588888886322 23455555544444576777    9999999999997     9999


Q ss_pred             cCcccCccCC---CCCCccccccCCCcceeeec--ccccCccceEEEEeCHHHHHhhcccc-----cccCCCC--cHHHH
Q 011777          291 DEVQTGFGRT---GSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPEIANVMAQKI-----QFNTFGG--NPVCS  358 (477)
Q Consensus       291 DEv~~gfgr~---G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~~~~~~~~~~-----~~~t~~~--~~~~~  358 (477)
                      |.++.|+-..   ....|.+   ....|-++++  |.++..++.|.++.+++..+.+....     ...|..+  +....
T Consensus       269 DAA~GG~~lPf~~~~~~~df---~~~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~a  345 (470)
T PLN02263        269 DGALFGLMMPFVKRAPKVTF---KKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAP  345 (470)
T ss_pred             eccchhhHhhhcccccccCC---CcCccEEEECCccccCCCcCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHH
Confidence            9999886320   0011111   1225666655  98888899999999977655443210     1112222  22234


Q ss_pred             HHHHHHHHhhchhhH---HHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHH
Q 011777          359 AGGLAVLRVIDKERR---QAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRE  435 (477)
Q Consensus       359 aaa~a~l~~l~~~~~---~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~  435 (477)
                      +....+|+.+..+++   .++..++.+++.++|++.    +...-.....+.+.+.  .      |..        .+..
T Consensus       346 l~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~----g~~~~~~p~s~~V~f~--~------p~~--------~~~~  405 (470)
T PLN02263        346 IFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA----GISAMLNELSSTVVFE--R------PKD--------EEFV  405 (470)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC----CCeEEeCCCceEEEEe--c------Cch--------HHhh
Confidence            556667776655554   444455666777777654    3322233344443332  1      111        1134


Q ss_pred             cCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          436 LGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       436 ~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      +|..+.+.   ++.+++...-.++++.+|++++-|.+..+
T Consensus       406 ~gW~L~~~---~~~~Hivvmphv~~~~id~fi~DL~~~~~  442 (470)
T PLN02263        406 RRWQLACQ---GNIAHVVVMPSVTIEKLDYFLKELVEKRS  442 (470)
T ss_pred             cceEEccC---CCcEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence            67666543   34577766655788999999999987654

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.38  E-value=9e-10  Score=100.36  Aligned_cols=327  Identities=17%  Similarity=0.205  Sum_probs=194.0

Q ss_pred             CCHHHHHHHHHHHhhccccccc-------cCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEE
Q 011777          113 CHPDVLNAIFEQSKLLQHATTI-------YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMI  185 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~-------~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii  185 (477)
                      -.++.++|+.+.-+-+......       ...|++.++-+.|++++  +.|.+.+|++.-||-.++|....   +++..+
T Consensus        29 Lt~eArkal~E~gDGYSvCD~C~~Grldei~kPpI~~F~~dlaeFl--g~D~~R~t~GARe~KfavMhal~---~~gd~v  103 (382)
T COG1103          29 LTEEARKALLEWGDGYSVCDFCLEGRLDEITKPPIKDFLEDLAEFL--GMDEVRVTAGAREAKFAVMHALC---KEGDWV  103 (382)
T ss_pred             CCHHHHHHHHHhcCCcchhhhhccCccccccCCcHHHHHHHHHHHh--CCceeeecccchhhHHHHHHHhc---cCCCEE
Confidence            3677777777654432211111       23577889999999999  45789999999999988877432   566777


Q ss_pred             EEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCC
Q 011777          186 ALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGG  265 (477)
Q Consensus       186 ~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G  265 (477)
                      +.++-.|=.+..+.-..+            .....+|+.-...+..+.+.|.+-+++..+. ..+.++..++..+.++.|
T Consensus       104 V~D~~aHYttyvAAErag------------l~v~eVp~tg~Pey~i~~e~y~~viee~~~~-~g~~~~lallTh~Dg~YG  170 (382)
T COG1103         104 VVDSLAHYTTYVAAERAG------------LNVAEVPNTGYPEYKITPEGYAEVIEEVKDE-GGDPPALALLTHVDGEYG  170 (382)
T ss_pred             EEcCcchHHHHHHHHhcC------------CeEEecCCCCCCceEecHHHHHHHHHHHHhc-cCCCceEEEEeccCCCcC
Confidence            778877755544333222            2222222211112333455566667776653 234578888888889999


Q ss_pred             eeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCHHHHHhhc
Q 011777          266 AVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPEIANVMA  343 (477)
Q Consensus       266 ~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~~~~~~~  343 (477)
                      .+..    -+++.++|+++|++++..-+|+ .||..     .....+.+|.++-|  |++++.-|+|.+..++|+.+..-
T Consensus       171 Nl~D----akkva~ic~e~gvPlllN~AYt-~Grmp-----vs~ke~g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~V~  240 (382)
T COG1103         171 NLAD----AKKVAKICREYGVPLLLNCAYT-VGRMP-----VSGKEIGADFIVGSGHKSMAASAPIGVLAMSEEWAEIVL  240 (382)
T ss_pred             Cchh----hHHHHHHHHHcCCceEeeccee-ecccc-----ccccccCCCEEEecCccchhccCCeeEEeehhHHHHHHH
Confidence            7766    7899999999999999999998 66543     34456778988766  99998679999999999887654


Q ss_pred             ccc-----------cccCCCCcHHH-HHHHH-HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccc-eeEE
Q 011777          344 QKI-----------QFNTFGGNPVC-SAGGL-AVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG-LMVG  409 (477)
Q Consensus       344 ~~~-----------~~~t~~~~~~~-~aaa~-a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g-~~~~  409 (477)
                      ..+           .+-|-.+.|+. +.|.. .+.+.+  .+|-+. -+..+++.+.|.++.. ....+ .++.. -+..
T Consensus       241 r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V~eRV--krWdeE-v~kaR~fv~elEkigg-~~qlG-~rPk~HdLm~  315 (382)
T COG1103         241 RRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHVVERV--KRWDEE-VEKARWFVAELEKIGG-VKQLG-ERPKNHDLMK  315 (382)
T ss_pred             hhcccccccceeeeecccccCchHHHHHhcCHHHHHHH--HHHHHH-HHHHHHHHHHHHHhhh-HHHhC-CCCcccceee
Confidence            322           12233333332 22222 222222  122222 2334566666665530 00011 11111 1112


Q ss_pred             EEEee--CCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          410 MELVT--DRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       410 i~~~~--~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ++...  .-..+  .....-.++++|+++||.-...|. ..+|.++. +..+.|+++..++++++++++
T Consensus       316 Fetp~f~eIakk--~~r~gyFlY~ELK~RgI~GI~~G~-Tk~~K~sv-yGl~~Eqve~V~~afkeI~ek  380 (382)
T COG1103         316 FETPVFHEIAKK--HKRKGYFLYEELKKRGIHGIQPGQ-TKYFKLSV-YGLSWEQVEYVVDAFKEIAEK  380 (382)
T ss_pred             ecCchHHHHHHh--CcCCceeeHHHHHhcCccccccCc-eeEEEEEe-ecCCHHHHHHHHHHHHHHHHh
Confidence            22100  00000  000112467899999987543222 34677763 678999999999999998764

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.38  E-value=2.7e-10  Score=118.34  Aligned_cols=309  Identities=15%  Similarity=0.110  Sum_probs=165.2

Q ss_pred             ChHHHHHHHHHHhhCCCC-------------CCEEEEeCChHHHHHHHHHHHHhccC-----------------------
Q 011777          137 HHAIADFAEALASKMPGN-------------LKVVYFVNSGTEANELAMLMARLSTG-----------------------  180 (477)
Q Consensus       137 ~~~~~~l~~~La~~~~~~-------------~~~v~~~~sGseA~~~Al~~ar~~~~-----------------------  180 (477)
                      .+....+.++|++++...             ...-.||+|||+||..||..||...-                       
T Consensus       128 t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~  207 (522)
T TIGR03799       128 TPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGY  207 (522)
T ss_pred             HHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccC
Confidence            344556667777765210             12357899999999999999987421                       


Q ss_pred             CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeEEEec
Q 011777          181 NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAGFIAE  258 (477)
Q Consensus       181 ~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~vi~e  258 (477)
                      ++.+|+....-|-...-+....+       .....+..++...  .+..+      .++|++.|+..  ....+.+|+..
T Consensus       208 ~~~~v~~S~~~H~S~~kaa~~lg-------lg~~~v~~vp~d~--~g~~d------~~~L~~~i~~~~~~g~~~~~vvat  272 (522)
T TIGR03799       208 DGLAILVSERGHYSLGKAADVLG-------IGRDNLIAIKTDA--NNRID------VDALRDKCAELAEQNIKPLAIVGV  272 (522)
T ss_pred             CceEEEECCCchHHHHHHHHHcC-------CCcccEEEEEeCC--CCcCC------HHHHHHHHHHHHHCCCCcEEEEEE
Confidence            11233333344433221111111       1111233343321  11222      57788777522  12234445444


Q ss_pred             ccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCC-Ccceeeec--ccccCccceEEEEeC
Q 011777          259 TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV-IPDIVTMA--KGIGNGLPLGAVVTT  335 (477)
Q Consensus       259 pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv-~pDivt~s--K~lg~G~pig~v~~~  335 (477)
                      ....+.|.+.|    +++|.++|++||+++++|.+|.|....- .-+.....++ ..|.++++  |.+.+.+..|+++.+
T Consensus       273 aGtt~tGaiDp----l~eIa~i~~~~g~~lHVDaA~gg~~~~~-~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr  347 (522)
T TIGR03799       273 AGTTETGNIDP----LDEMADIAQELGCHFHVDAAWGGATLLS-NTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFK  347 (522)
T ss_pred             ecCcCCCCcCC----HHHHHHHHHHcCCeEEEEchhhhHHHhC-HHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEe
Confidence            44556788888    9999999999999999999998642111 0000012455 57988887  988877889999886


Q ss_pred             -HHHHHhhccc----cc-c------cCCCCc-HHHHHHHHHHHHhhchh---hHHHHHHHHHHHHHHHHHHHHHhCCCce
Q 011777          336 -PEIANVMAQK----IQ-F------NTFGGN-PVCSAGGLAVLRVIDKE---RRQAHCADVGSHLLGRLRTLQERHDIIG  399 (477)
Q Consensus       336 -~~~~~~~~~~----~~-~------~t~~~~-~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~  399 (477)
                       ++..+.+...    .. +      .++.+. +.......++|+.+..+   .+.++..++.+++.+.|++.    +.+.
T Consensus       348 ~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~----~~~e  423 (522)
T TIGR03799       348 DPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQ----PDFE  423 (522)
T ss_pred             CHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC----CCeE
Confidence             4555544321    00 0      122221 22222455667766543   45566666666666666543    3221


Q ss_pred             ee-eccceeEEEEEeeCCCCC----------Cc----cHHHHHHHHHHHHHcCceeeccC-----CC----CCEEEEeC-
Q 011777          400 DV-RGRGLMVGMELVTDRKEK----------TP----AKAETAVLFEKLRELGVLVGKGG-----LH----GNVFRIKP-  454 (477)
Q Consensus       400 ~v-~g~g~~~~i~~~~~~~~~----------~~----~~~~~~~~~~~l~~~Gv~v~~~~-----~~----~~~iRi~p-  454 (477)
                      -+ .+.-.++.+.+.......          ..    .......+.+.+.+.|.......     .+    ..+||++. 
T Consensus       424 l~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~  503 (522)
T TIGR03799       424 LVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLA  503 (522)
T ss_pred             EecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEec
Confidence            11 122234444443211000          00    01123467777888886554311     11    14689865 


Q ss_pred             CCCCcHHHHHHHHHH
Q 011777          455 PMCFTKDDADFLVDA  469 (477)
Q Consensus       455 ~~~~t~e~i~~~l~~  469 (477)
                      +..+|+++|+.+++.
T Consensus       504 np~tt~~~i~~~l~~  518 (522)
T TIGR03799       504 NPLTTHEILQDILDE  518 (522)
T ss_pred             CCCCCHHHHHHHHHH
Confidence            444688999887764

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PLN02452 phosphoserine transaminase

Probab=99.32  E-value=7.6e-10  Score=110.31  Aligned_cols=326  Identities=12%  Similarity=0.001  Sum_probs=190.9

Q ss_pred             EEeecCCcccccCCCCCHHHHHHHHHHHhh----------ccccccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChH
Q 011777           98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKL----------LQHATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGT  165 (477)
Q Consensus        98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~----------~~~~~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGs  165 (477)
                      .+.|..|-..     -+++|.+++.+.+-+          ..|....+ .....+..+.|.+++.  .+.+.+++..|||
T Consensus         8 ~~~f~pGP~~-----lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f-~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt   81 (365)
T PLN02452          8 VFNFSAGPAT-----LPANVLAKAQAELYNWEGSGMSVMEMSHRGKEF-LSIIQKAEADLRELLDIPDNYEVLFLQGGAS   81 (365)
T ss_pred             eEeeeCCCCC-----CCHHHHHHHHHHHhcccccCccccccCCCchHH-HHHHHHHHHHHHHHhCCCCCceEEEEeCccH
Confidence            4456665542     378999999887643          22322211 3556777888888875  3455677779999


Q ss_pred             HHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHh
Q 011777          166 EANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHID  245 (477)
Q Consensus       166 eA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~  245 (477)
                      .++++++.-...  +++++++...++.|....-.+..-...        .+........+.....      ++++    +
T Consensus        82 ~~~ea~~~nl~~--~~~~~l~~~~G~fg~r~~~~a~~~g~~--------~~~~~~~~~~~~~~~~------~~~~----~  141 (365)
T PLN02452         82 TQFAAIPLNLCK--PGDKADFVVTGSWSKKAAKEAKKYCKT--------NVIASGKDEKYTKIPS------VSEW----E  141 (365)
T ss_pred             HHHHHHHHhcCC--CCCeEEEEECCHHHHHHHHHHHHhCCC--------cEEEecCCCCCCCCCC------hHHc----C
Confidence            999998875432  446677777777665443332211000        0000000111111111      1222    2


Q ss_pred             ccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccC
Q 011777          246 FGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGN  325 (477)
Q Consensus       246 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~  325 (477)
                      .  ..++..|.+..+...+|+...+   ++++.      ++++|+|-+++ +|  + ....++.+++  |..+--|.+| 
T Consensus       142 ~--~~~~~~v~~~hnETstGv~~~~---~~~i~------~~~lvVDa~Ss-~g--~-~pidv~~~~v--~~~saqK~lG-  203 (365)
T PLN02452        142 L--TPDAKFVHICANETIHGVEFKD---YPDVG------NVPLVADMSSN-FL--S-KPVDVSKYGV--IYAGAQKNVG-  203 (365)
T ss_pred             C--CCCCcEEEECCCCCCCcEecCc---ccccC------CCeEEEECCcc-cc--C-cccCHHHcCE--EEEecccccC-
Confidence            1  2356677776666667763222   34332      38999999998 32  2 3444555565  6666679995 


Q ss_pred             ccceEEEEeCHHHHHhhccc-----------ccccCCC-CcHHHHHHHHHHHHhhchh----hHHHHHHHHHHHHHHHHH
Q 011777          326 GLPLGAVVTTPEIANVMAQK-----------IQFNTFG-GNPVCSAGGLAVLRVIDKE----RRQAHCADVGSHLLGRLR  389 (477)
Q Consensus       326 G~pig~v~~~~~~~~~~~~~-----------~~~~t~~-~~~~~~aaa~a~l~~l~~~----~~~~~~~~~~~~l~~~L~  389 (477)
                      ...+|.+++++++.+.+...           ....+++ .|..++.+..++|+.+.++    ...++.+++.+++++.|+
T Consensus       204 P~Gl~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~  283 (365)
T PLN02452        204 PSGVTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAID  283 (365)
T ss_pred             CCCeEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence            33489999999988765432           1223343 4455666666888888654    355666666777777776


Q ss_pred             HHHHhCCCceeeeccce-eEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-CCCEEEEeCCCCCcHHHHHHHH
Q 011777          390 TLQERHDIIGDVRGRGL-MVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-HGNVFRIKPPMCFTKDDADFLV  467 (477)
Q Consensus       390 ~l~~~~~~~~~v~g~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~iRi~p~~~~t~e~i~~~l  467 (477)
                      +...-+....+..-+.. .+.+.+.        ......++.+.+.++|++..+|-. .++ +|++.=-.++.++++.++
T Consensus       284 ~~~G~y~~~~~~~~rs~~~vsF~~~--------~~~~~~~f~~~~~~~g~~~~~G~r~~gg-~R~s~yna~~~~~v~~L~  354 (365)
T PLN02452        284 ESNGFYVCPVEKSVRSLMNVPFTLG--------GSELEAEFVKEAAKAGMVQLKGHRSVGG-MRASIYNAMPLAGVEKLV  354 (365)
T ss_pred             hCCCcccCCCChHHhCCeEEEEEcC--------CchhHHHHHHHHHHCCCcccCCccccCc-eEEECcCCCCHHHHHHHH
Confidence            53100111111111222 3333331        122567899999999999988732 234 999888889999999999


Q ss_pred             HHHHHHHhh
Q 011777          468 DALDYSMSK  476 (477)
Q Consensus       468 ~~l~~~l~~  476 (477)
                      +.+++.-++
T Consensus       355 ~~m~~f~~~  363 (365)
T PLN02452        355 AFMKDFQAK  363 (365)
T ss_pred             HHHHHHHHh
Confidence            999987653

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.31  E-value=1.2e-09  Score=108.94  Aligned_cols=317  Identities=15%  Similarity=0.112  Sum_probs=175.4

Q ss_pred             CHH-HHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCC--CCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccC
Q 011777          114 HPD-VLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPG--NLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNA  190 (477)
Q Consensus       114 ~p~-v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~--~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~  190 (477)
                      +|. .++++.+++-...|.+.. ..+...+..+.|.+++..  +.+.++++.|||.++|+++.-... .++.++++.  +
T Consensus        15 ~~~~~~~~~~~~~~~~~HRs~~-F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~-~~g~~vLv~--g   90 (374)
T TIGR01365        15 RPGWSIEELKNAPLGRSHRSKL-GKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLG-CRGVDVLAW--E   90 (374)
T ss_pred             CchhhHHHHhhhhcccCcCCHH-HHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCC-CCCCeEEEE--C
Confidence            566 666666655444444332 235566777888888763  345678899999999999985432 134566653  3


Q ss_pred             ccCCccc-cccc-ccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeee
Q 011777          191 YHGGSSG-TIGL-TALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVE  268 (477)
Q Consensus       191 yhG~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~  268 (477)
                      +.|.... -+.. .+.+         .+..+.  .++...++      +++++.      ...+..+..|+   .+|+..
T Consensus        91 ~FG~r~~~eia~~~g~~---------~v~~l~--~~~g~~~~------~~~ve~------~~~v~~vhnET---STGv~n  144 (374)
T TIGR01365        91 SFGKGWVTDVTKQLKLP---------DVRVLE--AEYGKLPD------LKKVDF------KNDVVFTWNGT---TSGVRV  144 (374)
T ss_pred             HHHHHHHHHHHHhcCCC---------CcEEEc--CCCCCCCC------HHHcCC------CCCEEEecCCC---chheec
Confidence            5454322 1111 0100         011111  12222222      344441      12344444443   456555


Q ss_pred             CCchhHHHHHHHHHH-hCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCHHHHHhhccc
Q 011777          269 LAPGYLKLVYDIVRK-AGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPEIANVMAQK  345 (477)
Q Consensus       269 ~~~~~l~~l~~l~~~-~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~~~~~~~~~  345 (477)
                      +    +++   ++++ +++++|+|-|-+ ||  + ..+.++  +  .|++..|  |+|++--.+|+++.+++..+.....
T Consensus       145 p----v~~---i~~~~~~~lliVDavSs-~g--~-~~l~~d--~--iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~  209 (374)
T TIGR01365       145 P----NGD---FIPADREGLTICDATSA-AF--A-QDLDYH--K--LDVVTFSWQKVLGGEGAHGMLILSPRAVARLESY  209 (374)
T ss_pred             c----ccc---cccccCCCcEEEEccch-hc--C-CCCChh--H--CcEEEEechhccCCCCceEEEEECHHHHHHHhhc
Confidence            5    343   3333 589999999876 43  2 333333  3  6777554  9999755688999999877654420


Q ss_pred             ----------------------ccccCCCC-cHHHHHHHHHHHHhhchh----hHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 011777          346 ----------------------IQFNTFGG-NPVCSAGGLAVLRVIDKE----RRQAHCADVGSHLLGRLRTLQERHDII  398 (477)
Q Consensus       346 ----------------------~~~~t~~~-~~~~~aaa~a~l~~l~~~----~~~~~~~~~~~~l~~~L~~l~~~~~~~  398 (477)
                                            ....|... +..+..+.+.+|+.+.++    +..++.+++.+.+++.++++.. ....
T Consensus       210 ~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~-l~~~  288 (374)
T TIGR01365       210 TPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNW-IHFL  288 (374)
T ss_pred             CCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCC-cccC
Confidence                                  01223333 344445555667655543    3455566666666666666520 1111


Q ss_pred             ee-eecccee-EEEEEeeCCC---CCCccHHHHHHHHHHHHHcCceeeccC--CCCCEEEEeCCCCCcHHHHHHHHHHHH
Q 011777          399 GD-VRGRGLM-VGMELVTDRK---EKTPAKAETAVLFEKLRELGVLVGKGG--LHGNVFRIKPPMCFTKDDADFLVDALD  471 (477)
Q Consensus       399 ~~-v~g~g~~-~~i~~~~~~~---~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~iRi~p~~~~t~e~i~~~l~~l~  471 (477)
                      .. ..-++.. ..+.+..+..   ...|.-....++.+.|+++|+.+.+|.  ..++.|||..--.++++||+.+++.|+
T Consensus       289 ~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~  368 (374)
T TIGR01365       289 AETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLD  368 (374)
T ss_pred             CCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHH
Confidence            11 1112222 2333311100   001111114678999999999888663  235889999888899999999999999


Q ss_pred             HHHhh
Q 011777          472 YSMSK  476 (477)
Q Consensus       472 ~~l~~  476 (477)
                      -+...
T Consensus       369 ~~~~~  373 (374)
T TIGR01365       369 WAFAL  373 (374)
T ss_pred             HHHhc
Confidence            77654

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=99.30  E-value=8.2e-10  Score=105.48  Aligned_cols=327  Identities=15%  Similarity=0.119  Sum_probs=184.6

Q ss_pred             CHHHHHHHHHHHhhcc-----ccccccCChHHHHHHHHHHhh--CCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEE
Q 011777          114 HPDVLNAIFEQSKLLQ-----HATTIYLHHAIADFAEALASK--MPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIA  186 (477)
Q Consensus       114 ~p~v~~Av~~~l~~~~-----~~~~~~~~~~~~~l~~~La~~--~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~  186 (477)
                      +..+++...+.++...     ++.+.+..-.+...++-|.++  .|.+.+.|++|.|.|.|+...|++.... .++.|++
T Consensus        88 p~Dai~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~-~~~Gvli  166 (475)
T KOG0258|consen   88 PTDAIKRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAG-KKTGVLI  166 (475)
T ss_pred             CHHHHHHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcC-CCCceEe
Confidence            3455555555555432     222233444567777777766  3567789999999999999999987653 6788999


Q ss_pred             EccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeEEEecccCCCC
Q 011777          187 LRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAGFIAETIQGVG  264 (477)
Q Consensus       187 ~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~  264 (477)
                      .-+-|.-++.. +++.+            ...+++.......|+-|.    ++|++.++..  +-+..++|+++|-|++|
T Consensus       167 PiPQYPLYsAt-i~l~~------------~~~v~YyLdEe~~W~ld~----~el~~~~~eA~k~i~~r~lvvINPGNPTG  229 (475)
T KOG0258|consen  167 PIPQYPLYSAT-ISLLG------------GTQVPYYLDEESNWSLDV----AELERSVDEARKGINPRALVVINPGNPTG  229 (475)
T ss_pred             ecCCCchhHHH-HHHhC------------CcccceeeccccCCCCCH----HHHHHHHHHHhccCCceEEEEECCCCccc
Confidence            99999766432 22221            112222222233444444    4555555422  12345789999977665


Q ss_pred             CeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccC-CCCCCcccc----ccC-CCccee------eecccccC--ccceE
Q 011777          265 GAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGR-TGSHYWGFE----TQG-VIPDIV------TMAKGIGN--GLPLG  330 (477)
Q Consensus       265 G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr-~G~~~~~~~----~~g-v~pDiv------t~sK~lg~--G~pig  330 (477)
                        .+.+++-+++|..+|.++|++|+.||||..--+ .+++++++.    ..| -.||-+      +.||++.|  |.|-|
T Consensus       230 --qvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGG  307 (475)
T KOG0258|consen  230 --QVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGG  307 (475)
T ss_pred             --hhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCC
Confidence              566899999999999999999999999875433 344565552    122 344433      35799886  88889


Q ss_pred             EEEe---CHHHHHhhcccccccCCCCcHHHHHHHHHH----------HHh--hchhhHHHHHHHHHHHHHHHHHHHHHhC
Q 011777          331 AVVT---TPEIANVMAQKIQFNTFGGNPVCSAGGLAV----------LRV--IDKERRQAHCADVGSHLLGRLRTLQERH  395 (477)
Q Consensus       331 ~v~~---~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~----------l~~--l~~~~~~~~~~~~~~~l~~~L~~l~~~~  395 (477)
                      ++=.   .+++.+.+.+... .....+..+++..-..          .+.  -+.+...+.++++...+.+.++++    
T Consensus       308 YmEv~n~~prv~~qi~Kl~s-i~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~----  382 (475)
T KOG0258|consen  308 YMESLNRDPRVKQQIKKLAS-IKLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSL----  382 (475)
T ss_pred             eeecccCChhHHHHHHHHHh-hhhcCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhc----
Confidence            8743   3555554432210 0001111111111000          110  012345555666665555555554    


Q ss_pred             CCceeeeccceeEEEEEeeCC---------CCCCccHHHHHHHHHHHHHcCceeeccCCCC-----CEEEEeCCCCCcHH
Q 011777          396 DIIGDVRGRGLMVGMELVTDR---------KEKTPAKAETAVLFEKLRELGVLVGKGGLHG-----NVFRIKPPMCFTKD  461 (477)
Q Consensus       396 ~~~~~v~g~g~~~~i~~~~~~---------~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~-----~~iRi~p~~~~t~e  461 (477)
                      +.+.+-+.+|.|+.+.-..-+         ....|+   .-...+.|..-||.+.||..+|     -++|..   ...+.
T Consensus       383 ~gi~cn~~qGAMY~fP~i~lP~kaie~A~~~~~~PD---~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~T---iLp~~  456 (475)
T KOG0258|consen  383 EGISCNPVQGAMYLFPQISLPPKAIEAAKALGIAPD---EFYCLKLLEATGICVVPGSGFGQKEGTYHFRTT---ILPPG  456 (475)
T ss_pred             CceeeccCccceeecccccCCHHHHHHHHHhCCCCc---HHHHHHHHHhcCeEEecCCCCCCCCceeEEEEe---ecCch
Confidence            567777888998876432211         011121   1123345556799999985544     246652   22222


Q ss_pred             HHHHHHHHHHHH
Q 011777          462 DADFLVDALDYS  473 (477)
Q Consensus       462 ~i~~~l~~l~~~  473 (477)
                       + +.++++.++
T Consensus       457 -~-~~i~~~~~f  466 (475)
T KOG0258|consen  457 -L-EIIEKFKKF  466 (475)
T ss_pred             -h-HHHHHHHHH
Confidence             3 556665543

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.28  E-value=7.6e-09  Score=96.91  Aligned_cols=335  Identities=14%  Similarity=0.085  Sum_probs=196.9

Q ss_pred             EEeCCCCEEEeecCCcccccCCCCCHHHHHHHH-HHHhhcccc---ccc----cCChHHHHHHHHHHhhCCCCCCEEEEe
Q 011777           90 LFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIF-EQSKLLQHA---TTI----YLHHAIADFAEALASKMPGNLKVVYFV  161 (477)
Q Consensus        90 ~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~-~~l~~~~~~---~~~----~~~~~~~~l~~~La~~~~~~~~~v~~~  161 (477)
                      .-+.+|-.|||-      |+||-.++.+.+... ...+...+.   +..    .....-..|..+|+-+.+....+|..+
T Consensus        26 f~lp~~viyLdg------nSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLiGA~~~Evvv~   99 (407)
T COG3844          26 FALPGGVIYLDG------NSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIGARAGEVVVT   99 (407)
T ss_pred             ccCCCCeEEeec------cccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhhhcCCCCceEEe
Confidence            345677788884      347754434444333 333332111   110    011233566777777777777889888


Q ss_pred             CChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHH
Q 011777          162 NSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQ  241 (477)
Q Consensus       162 ~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le  241 (477)
                      +|.+--+.-.+-.+...+.++.||++++.-.. ++......-.......   ..+..+           ..    .++++
T Consensus       100 dtts~nl~k~L~aalr~~~~r~vIv~E~~~fp-Tdly~a~g~~~~~~~~---~~~~~~-----------~~----P~~~~  160 (407)
T COG3844         100 DTTSINLFKVLAAALRPQEGRRVIVSEGDNFP-TDLYIAEGLADLLGIG---YDLEGV-----------IA----PRALE  160 (407)
T ss_pred             CCcchHHHHHHHHHhccCCCceEEeecCCCCC-cchhhhcchhhhhccc---ccceee-----------eC----hHHHH
Confidence            88776555555555555556667777664322 1211111100000000   000000           01    25777


Q ss_pred             HHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcc--eeee
Q 011777          242 DHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPD--IVTM  319 (477)
Q Consensus       242 ~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pD--ivt~  319 (477)
                      +++.    ++++.|++..++--+|....    +.+|-+++++||++++.|=.++    .|  ....+...-..|  |-|-
T Consensus       161 ~~~~----dd~AvV~L~~V~y~TGql~d----m~aiT~~AH~~galv~wDLAHs----aG--avp~~Lh~~gaDfaigcs  226 (407)
T COG3844         161 EAIT----DDVAVVLLSHVNYKTGQLLD----MRAITALAHQHGALVGWDLAHS----AG--AVPVDLHAAGADFAIGCS  226 (407)
T ss_pred             Hhhc----cceEEEEeccccccccceee----HHHHHHHHHhcCceEEeehhcc----cC--CcceeecccCCCeeeeee
Confidence            7776    78999999999999997776    8999999999999999998887    34  233444333344  4455


Q ss_pred             cccccCcc-ceEEEEeCHHHHHhhcccc--------------------cccCC--C-CcHHHHHHHHHHHHhhch---hh
Q 011777          320 AKGIGNGL-PLGAVVTTPEIANVMAQKI--------------------QFNTF--G-GNPVCSAGGLAVLRVIDK---ER  372 (477)
Q Consensus       320 sK~lg~G~-pig~v~~~~~~~~~~~~~~--------------------~~~t~--~-~~~~~~aaa~a~l~~l~~---~~  372 (477)
                      =|-+++|. ..+++.+.++..+...+..                    +..-|  + .+-.++++...+|++..+   .+
T Consensus       227 yKYLNgGPGapa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~  306 (407)
T COG3844         227 YKYLNGGPGAPAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITE  306 (407)
T ss_pred             ceeccCCCCCceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHH
Confidence            59998763 4456666555444332110                    00011  1 234455555567776544   45


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCce----eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCC
Q 011777          373 RQAHCADVGSHLLGRLRTLQERHDIIG----DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGN  448 (477)
Q Consensus       373 ~~~~~~~~~~~l~~~L~~l~~~~~~~~----~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~  448 (477)
                      +.++...+.+++.+.+......++.-.    .-..+|.-+.+..        |   ...++++.|.++||+.--  ...+
T Consensus       307 lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~h--------p---~~~~V~qaLi~rGVigD~--R~P~  373 (407)
T COG3844         307 LRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYH--------P---HGYQVMQALIDRGVIGDF--REPD  373 (407)
T ss_pred             HHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEec--------C---cHHHHHHHHHHcCccccc--cCCC
Confidence            666666777788777766554443211    1112344434333        1   256799999999998643  2368


Q ss_pred             EEEEeC-CCCCcHHHHHHHHHHHHHHHhh
Q 011777          449 VFRIKP-PMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       449 ~iRi~p-~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ++||.| |+..+-+|+=.+++.|++++.+
T Consensus       374 vlRfgftPlY~~~~DVw~AV~~L~evL~t  402 (407)
T COG3844         374 VLRFGFTPLYVSFVDVWDAVDALEEVLDT  402 (407)
T ss_pred             eeeecCccceechhHHHHHHHHHHHHHHh
Confidence            999965 6788999999999999999875

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.26  E-value=3e-09  Score=105.49  Aligned_cols=291  Identities=16%  Similarity=0.136  Sum_probs=171.0

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +.+++..+|....|.+.++++-+.  +..+.++||..|+..++.....  .+++|+..+..|.|..........      
T Consensus        55 ~~Y~R~~nPT~~~lE~~~a~LEg~--~~~~afsSGmaAI~~~~l~ll~--~GD~vl~~~~~YG~t~~~~~~~l~------  124 (396)
T COG0626          55 YDYSRTGNPTRDALEEALAELEGG--EDAFAFSSGMAAISTALLALLK--AGDHVLLPDDLYGGTYRLFEKILQ------  124 (396)
T ss_pred             cccccCCCccHHHHHHHHHHhhCC--CcEEEecCcHHHHHHHHHHhcC--CCCEEEecCCccchHHHHHHHHHH------
Confidence            334456689999999999998744  6789999999999998765433  568899988888765443332211      


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                         ..|+....+...       +    .+++++.+.   ++++++|++|+..|+.--++.    +++|.++|+++|+++|
T Consensus       125 ---~~gi~~~~~d~~-------~----~~~~~~~~~---~~~tk~v~lEtPsNP~l~v~D----I~~i~~~A~~~g~~vv  183 (396)
T COG0626         125 ---KFGVEVTFVDPG-------D----DEALEAAIK---EPNTKLVFLETPSNPLLEVPD----IPAIARLAKAYGALVV  183 (396)
T ss_pred             ---hcCeEEEEECCC-------C----hHHHHHHhc---ccCceEEEEeCCCCccccccc----HHHHHHHHHhcCCEEE
Confidence               123333321110       0    134555444   257999999998777655555    9999999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCccee--eecccccC-c-cceEEEEeCHH-HHHhhcccccc-cCCCCcHHHHHHHHH
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-G-LPLGAVVTTPE-IANVMAQKIQF-NTFGGNPVCSAGGLA  363 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pig~v~~~~~-~~~~~~~~~~~-~t~~~~~~~~aaa~a  363 (477)
                      +|.....    +   ..++-+..-.||+  +.+|-++| + .-.|.++++.+ +.+.+...... ......|..+...+.
T Consensus       184 VDNTfat----P---~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lR  256 (396)
T COG0626         184 VDNTFAT----P---VLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLR  256 (396)
T ss_pred             EECCccc----c---cccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHh
Confidence            9998762    2   1123233346777  47799998 3 55676776554 55544211110 111234555554444


Q ss_pred             HHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCcee------------------eeccceeEEEEEeeCCCCCCccHHH
Q 011777          364 VLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGD------------------VRGRGLMVGMELVTDRKEKTPAKAE  425 (477)
Q Consensus       364 ~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~~~~~~~~~~~~~~  425 (477)
                      .|+.+.  -..++..++...+.+.|.+    ++.+..                  ..|.|.++.+++...        ..
T Consensus       257 GlkTL~--~Rm~~~~~nA~~IA~~L~~----~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~--------~~  322 (396)
T COG0626         257 GLRTLA--LRMERHNENALKIAEFLAD----HPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNE--------EA  322 (396)
T ss_pred             ccchHH--HHHHHHHHHHHHHHHHHhc----CCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCCh--------HH
Confidence            444332  1234444444444444443    443322                  224788888888531        23


Q ss_pred             HHHHHHHHHHcCcee----------ecc---------------CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          426 TAVLFEKLRELGVLV----------GKG---------------GLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       426 ~~~~~~~l~~~Gv~v----------~~~---------------~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +.++.+.|.--.+..          .|.               |..++.+|++..+    |+++.+++-|++++++
T Consensus       323 ~~~f~~~L~l~~~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGl----Ed~eDLi~Dl~~Al~~  394 (396)
T COG0626         323 AKKFLDSLKLFKLAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVGL----EDVEDLIADLEQALAK  394 (396)
T ss_pred             HHHHHHhCCccEEeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHHh
Confidence            445555443222111          110               2235789997665    5566666666666654

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.26  E-value=5.3e-12  Score=121.60  Aligned_cols=201  Identities=19%  Similarity=0.180  Sum_probs=120.0

Q ss_pred             CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCcc
Q 011777          113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYH  192 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yh  192 (477)
                      .+|++.+++.+ ..... . ..+.++...++.++++++++.  +.++|+.|||.||..+++....  +...||.-+. .|
T Consensus         7 ~~~~m~~a~~~-a~~gd-~-~Yg~D~~~~~l~~~i~~l~g~--e~a~f~~sGT~An~~al~~~~~--~~~~vi~~~~-aH   78 (290)
T PF01212_consen    7 PTPAMLEAMAA-ANVGD-D-AYGEDPTTARLEERIAELFGK--EAALFVPSGTMANQLALRAHLR--PGESVICADT-AH   78 (290)
T ss_dssp             S-HHEEHHHHH-TTSB--C-CTTSSHHHHHHHHHHHHHHTS--SEEEEESSHHHHHHHHHHHHHH--TTEEEEEETT-EH
T ss_pred             CCHHHHHHHHc-cccCC-c-ccCCChhHHHHHHHHHHHcCC--CEEEEeCCCChHHHHHHHHHHh--cCCceecccc-ce
Confidence            57999999944 33222 1 234578889999999999954  6778999999999999997653  4455555433 44


Q ss_pred             CCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeEEEecccCCCCCeeeCC
Q 011777          193 GGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAGFIAETIQGVGGAVELA  270 (477)
Q Consensus       193 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~  270 (477)
                      -.....-.....         .|...++++....+.++      +++|++.++..  |..++++|.+|..++..|..+++
T Consensus        79 i~~~E~ga~~~~---------~G~~~~~l~~~~~G~l~------~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s  143 (290)
T PF01212_consen   79 IHFDETGAIEEL---------SGAKLIPLPSDDDGKLT------PEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYS  143 (290)
T ss_dssp             HHHSSTTHHHHH---------TTCEEEEEBECTGTBB-------HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---
T ss_pred             eeeeccchhhHh---------cCcEEEECCCcccCCCC------HHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCC
Confidence            332222111000         13333333332212232      68899888742  34678999999877775557889


Q ss_pred             chhHHHHHHHHHHhCcEEEEcCcccCc--cCCCCCCccccccCCCcceeeec--ccccCccceE-EEEeCHHHHHh
Q 011777          271 PGYLKLVYDIVRKAGGVCIADEVQTGF--GRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLG-AVVTTPEIANV  341 (477)
Q Consensus       271 ~~~l~~l~~l~~~~gillI~DEv~~gf--gr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig-~v~~~~~~~~~  341 (477)
                      .+.|++|.++|++||+.++.|-+--.-  ...| .  .....-...|++++|  |.++  .+.| .+++++++++.
T Consensus       144 ~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~-~--~~~e~~~~~D~v~~~~tK~~g--~~~Gavl~~~~~~i~~  214 (290)
T PF01212_consen  144 LEELRAISELAREHGLPLHMDGARLANAAAALG-V--SLAEIAAGADSVSFGGTKNGG--APGGAVLAGNKEFIAK  214 (290)
T ss_dssp             HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHH-H--HHHHHHTTSSEEEEETTSTT---SSSEEEEEESHHHHHH
T ss_pred             HHHHHHHHHHHHhCceEEEEehhhHHHhhhccc-c--cHHHHhhhCCEEEEEEEcccc--cccceEEEechHHHHH
Confidence            999999999999999999999652100  0001 0  011111345777654  7654  3444 55678886544

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.21  E-value=8.7e-09  Score=102.49  Aligned_cols=349  Identities=14%  Similarity=0.119  Sum_probs=182.7

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMA  175 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~a  175 (477)
                      ..|||+.+-.++.   -..++..+||..    +.-  ...-++...+|.+..+++++  .+.++++.+|..|+..+++..
T Consensus        41 dV~IDLrSDTgT~---apS~~m~aAM~~----GDD--~Y~gdpSv~~Lee~vael~G--~E~alpthqGRgaE~Il~~~~  109 (467)
T TIGR02617        41 DVFIDLLTDSGTG---AVTQSMQAAMMR----GDE--AYSGSRSYYALAESVKNIFG--YQYTIPTHQGRGAEQIYIPVL  109 (467)
T ss_pred             CeEEECccCCCCC---CCCHHHHHHHHc----CCc--ccccCchHHHHHHHHHHHhC--CceEEECCCCchHHHHHHHhh
Confidence            4589999887652   246777887764    211  11235668899999999994  478999999999999888754


Q ss_pred             HhccCCceEE------EEccCccCCcc-cccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          176 RLSTGNLGMI------ALRNAYHGGSS-GTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       176 r~~~~~~~ii------~~~~~yhG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      ... +++.++      ++.+.||-.+. +...+++.....  .........+.+.++++.++      +++|+++|+...
T Consensus       110 ~~~-~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~--l~~~ea~~~~~~~~fkG~~d------l~~le~~I~~~g  180 (467)
T TIGR02617       110 IKK-REQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARN--VYTKEAFDTGVRYDFKGNFD------LEGLERGIEEVG  180 (467)
T ss_pred             ccc-ccccccccccccccceEEEEecchHHHHHcCceeec--ccchhhcccccCCCCCCCcC------HHHHHHHHhhcC
Confidence            331 111111      11122332221 122222111000  00000000111223333343      688999987433


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc----Cc------cCCCCCCccc-cccCCCccee
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT----GF------GRTGSHYWGF-ETQGVIPDIV  317 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~----gf------gr~G~~~~~~-~~~gv~pDiv  317 (477)
                      .+++..+...-.+|..|..+.+.+.+++++++|++||+.++.|-+--    -|      +..|....-+ ...--..|.+
T Consensus       181 ~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsv  260 (467)
T TIGR02617       181 PNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADML  260 (467)
T ss_pred             CCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEE
Confidence            35666666665556656678899999999999999999999997531    11      2222111100 0001124655


Q ss_pred             --eecccccCccceE-EEEeCHH----HHHhhccc----ccccCCCCcHH-HHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 011777          318 --TMAKGIGNGLPLG-AVVTTPE----IANVMAQK----IQFNTFGGNPV-CSAGGLAVLRVIDKERRQAHCADVGSHLL  385 (477)
Q Consensus       318 --t~sK~lg~G~pig-~v~~~~~----~~~~~~~~----~~~~t~~~~~~-~~aaa~a~l~~l~~~~~~~~~~~~~~~l~  385 (477)
                        |+||+++  .|+| +++++++    +.+..+..    ..+-||+|-.- -+.|....|+...+++++.+--...++|.
T Consensus       261 t~slsKglg--ApvGg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl~  338 (467)
T TIGR02617       261 AMSAKKDAM--VPMGGLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRINQVQYLV  338 (467)
T ss_pred             EEEcCCCCC--CcccceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHHHHHHHH
Confidence              5678775  3554 6666654    23332221    23456665321 22222223544444556655556667787


Q ss_pred             HHHHHHHHhCCCceeeeccceeEEEEEee----CCCCCCccHHHHHHHHHHH-HHcCcee---ecc-------C-C--C-
Q 011777          386 GRLRTLQERHDIIGDVRGRGLMVGMELVT----DRKEKTPAKAETAVLFEKL-RELGVLV---GKG-------G-L--H-  446 (477)
Q Consensus       386 ~~L~~l~~~~~~~~~v~g~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~l-~~~Gv~v---~~~-------~-~--~-  446 (477)
                      ++|.+.  ..|++. +  -|.-+.++-..    -+....|.    ..+.-+| ++-||-.   +..       + .  . 
T Consensus       339 ~~L~~~--Gvpi~~-~--Gghav~iDa~~~lphip~~~fpa----~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~  409 (467)
T TIGR02617       339 NGLEEI--GVVCQQ-A--GGHAAFVDAGKLLPHIPADQFPA----HALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPC  409 (467)
T ss_pred             HHHHhC--CCcEEe-c--CccEEEEehhhhCCCCChhhCcH----HHHHHHHHHHcCcceEeecceecccCCCCCccCCC
Confidence            777664  223322 2  23333343211    11122232    3333333 3444432   111       0 0  0 


Q ss_pred             -CCEEEEeCCC-CCcHHHHHHHHHHHHHHHh
Q 011777          447 -GNVFRIKPPM-CFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       447 -~~~iRi~p~~-~~t~e~i~~~l~~l~~~l~  475 (477)
                       -..+|+..|- +.|.+++|...+++..+.+
T Consensus       410 ~~el~RlaipRrvyt~~h~d~v~~~~~~~~~  440 (467)
T TIGR02617       410 PAELLRLTIPRATYTQTHMDFIIEAFKHVKE  440 (467)
T ss_pred             ccceeeeccccccccHhHHHHHHHHHHHHHh
Confidence             1467886554 4589999999999988765

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.20  E-value=2.7e-09  Score=102.52  Aligned_cols=299  Identities=15%  Similarity=0.186  Sum_probs=165.3

Q ss_pred             hHHHHHHHHHHhhCCC-C-----CC--EEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          138 HAIADFAEALASKMPG-N-----LK--VVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       138 ~~~~~l~~~La~~~~~-~-----~~--~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +...++.+.+.+++-+ +     .+  ..+-|.|||-|+-.+-+......++..|.+.++++..+.......        
T Consensus        69 ~G~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~a--------  140 (396)
T COG1448          69 EGLPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAA--------  140 (396)
T ss_pred             CCcHHHHHHHHHHhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhc--------
Confidence            3355666666665432 1     11  235678999999999987777777888888888885443222222        


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                           |+....+|+-......-|    .+.+-..++...++. ..++-.+-+|++| +-++.+.|++|.++.++.|.+-+
T Consensus       141 -----Gl~v~~Y~Yyd~~~~~~d----f~~mla~L~~a~~~~-vvLLH~CcHNPTG-~D~t~~qW~~l~~~~~~r~lip~  209 (396)
T COG1448         141 -----GLEVETYPYYDAETKGLD----FDGMLADLKTAPEGS-VVLLHGCCHNPTG-IDPTEEQWQELADLIKERGLIPF  209 (396)
T ss_pred             -----CCceeeeecccccccccc----HHHHHHHHHhCCCCC-EEEEecCCCCCCC-CCCCHHHHHHHHHHHHHcCCeee
Confidence                 222222222111000011    233333344333333 3444455677777 67899999999999999999999


Q ss_pred             EcCcccCccCCCCC-Ccccccc-CCCc-cee--eecccccC-ccceEEEEe---CHHHHHhhccc---ccccCCCCcHH-
Q 011777          290 ADEVQTGFGRTGSH-YWGFETQ-GVIP-DIV--TMAKGIGN-GLPLGAVVT---TPEIANVMAQK---IQFNTFGGNPV-  356 (477)
Q Consensus       290 ~DEv~~gfgr~G~~-~~~~~~~-gv~p-Div--t~sK~lg~-G~pig~v~~---~~~~~~~~~~~---~~~~t~~~~~~-  356 (477)
                      +|=+|.||+..... .++...+ ...+ -++  +|||.||- |-|+|++..   +++..+.+...   .--++|+.+|- 
T Consensus       210 ~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~  289 (396)
T COG1448         210 FDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAH  289 (396)
T ss_pred             eehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchh
Confidence            99999999753311 1111111 1122 333  58899995 899986643   34444433321   11244544332 


Q ss_pred             HHHHHHHHHHh--h------chhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHH
Q 011777          357 CSAGGLAVLRV--I------DKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAV  428 (477)
Q Consensus       357 ~~aaa~a~l~~--l------~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~  428 (477)
                      ++......|+-  +      +-+.+.+++.+++..|.+.|++.......-.-....|+|...-+            ..++
T Consensus       290 Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gl------------s~~Q  357 (396)
T COG1448         290 GAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKALGAPRNFDFIISQRGMFSYTGL------------SPEQ  357 (396)
T ss_pred             hHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchHhhcCceeecCCC------------CHHH
Confidence            22222222221  0      01234566666666666666664333222222334455443222            1234


Q ss_pred             HHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          429 LFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       429 ~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      +.+...+.||+....|      ||+.. .+++..|+.+.+.+.+++
T Consensus       358 V~rLree~~IY~v~sG------Ri~va-Gl~~~ni~~va~ai~~v~  396 (396)
T COG1448         358 VDRLREEFGIYLVASG------RINVA-GLNTSNIDYVAKAIAAVL  396 (396)
T ss_pred             HHHHHHhccEEEecCC------eeeec-cCChhhHHHHHHHHHhhC
Confidence            4444456799987654      77654 578899999999988753

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.16  E-value=7.1e-09  Score=99.88  Aligned_cols=303  Identities=13%  Similarity=0.114  Sum_probs=168.9

Q ss_pred             ChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHH-HHHHHHhcc-----------CCceEEEEccCccCCcccccccccC
Q 011777          137 HHAIADFAEALASKMPGNLKVVYFVNSGTEANEL-AMLMARLST-----------GNLGMIALRNAYHGGSSGTIGLTAL  204 (477)
Q Consensus       137 ~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~-Al~~ar~~~-----------~~~~ii~~~~~yhG~~~~~~~~~~~  204 (477)
                      -..+.++++..+++++.+.++|+..++.|--++. .+..+..+.           ++-++++..++|-.+...+..    
T Consensus        68 l~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~E~----  143 (425)
T PF12897_consen   68 LDGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFAITEH----  143 (425)
T ss_dssp             SS--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHHHHHH----
T ss_pred             cCChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHHHHHh----
Confidence            3456777888888888777887777666654433 222222211           245788888888654332222    


Q ss_pred             CCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHH-HHH
Q 011777          205 NTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDI-VRK  283 (477)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l-~~~  283 (477)
                               .|+..+++|....+|   |    ++.+|+++..  ...+++++|-|..++...+..+.+-.+++.++ +..
T Consensus       144 ---------~Giemi~VpM~~dGP---D----mD~Ve~LV~~--D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA  205 (425)
T PF12897_consen  144 ---------FGIEMIPVPMTEDGP---D----MDMVEELVAE--DPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAA  205 (425)
T ss_dssp             ---------CT-EEEEEEEETTEE--------HHHHHHHTHT--STTEEEEEE-SSS-TTT-----HHHHHHHHHS--SS
T ss_pred             ---------hCcEEEecCCCCCCC---C----HHHHHHHHhc--CCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCC
Confidence                     355655555433222   1    5788888852  36799999999655544477899999999888 456


Q ss_pred             hCcEEEEcCcccCccCCCC--CCc--cc----cccCCCccee----eecccccCccceEEEEeCHHHHHhhcccccccCC
Q 011777          284 AGGVCIADEVQTGFGRTGS--HYW--GF----ETQGVIPDIV----TMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTF  351 (477)
Q Consensus       284 ~gillI~DEv~~gfgr~G~--~~~--~~----~~~gv~pDiv----t~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~  351 (477)
                      .+.-|+.|.+|+---.++.  ..-  .+    ...| .||.+    +.||---.|-.++++.++++-++.+.......|.
T Consensus       206 ~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AG-npdrv~~F~STSKITf~GaGva~~aaS~~Nl~~~~~~~~~~tI  284 (425)
T PF12897_consen  206 PDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAG-NPDRVYVFASTSKITFPGAGVAFFAASEANLAWIKKHLSVQTI  284 (425)
T ss_dssp             TT-EEEEE-TTTT-BSSSSSS------HHHHHHHTT--TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHHHHHHH-S
T ss_pred             cCeEEEeecCceEeeccccccchhhhHHHHHHHHcC-CCCeEEEEecccccccCCcceeeeecCHHHHHHHHHHhcCcee
Confidence            8999999999872111110  000  00    0111 35533    6789888888999999999988888766666778


Q ss_pred             CCcHHHHHHHHHHHHhhchh-hHHHHHHHHHHHHHHHHHHH----HHh----CCCceeeec-cceeEEEEEeeCCCCCCc
Q 011777          352 GGNPVCSAGGLAVLRVIDKE-RRQAHCADVGSHLLGRLRTL----QER----HDIIGDVRG-RGLMVGMELVTDRKEKTP  421 (477)
Q Consensus       352 ~~~~~~~aaa~a~l~~l~~~-~~~~~~~~~~~~l~~~L~~l----~~~----~~~~~~v~g-~g~~~~i~~~~~~~~~~~  421 (477)
                      +.+-+.|..-..-++-  .+ ++.+++++..+.++-++...    .++    .++.....+ -|.|+.++....      
T Consensus       285 gpdKvNQLRHvrff~d--~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G------  356 (425)
T PF12897_consen  285 GPDKVNQLRHVRFFKD--AEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDG------  356 (425)
T ss_dssp             ---HHHHHHHHHHHHS--HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT------
T ss_pred             CccHHHHHHHHHHhcC--hhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCC------
Confidence            8888888776666653  34 67788888777666555432    122    233333333 367777776431      


Q ss_pred             cHHHHHHHHHHHHHcCceeeccCC--------CCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          422 AKAETAVLFEKLRELGVLVGKGGL--------HGNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       422 ~~~~~~~~~~~l~~~Gv~v~~~~~--------~~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                         .+.++++.+++.||.+.+.|.        ....|||.|++ -+.+|++.+++.+.-++
T Consensus       357 ---~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~-P~leel~~Am~~~~~cv  413 (425)
T PF12897_consen  357 ---TAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSY-PSLEELETAMDVFATCV  413 (425)
T ss_dssp             ----HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SS-S-HHHHHHHHHHHHHHH
T ss_pred             ---hHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCC-CCHHHHHHHHHHHHHHH
Confidence               367899999999999987532        24689999876 57899999999886554

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>PLN02271 serine hydroxymethyltransferase

Probab=99.16  E-value=4.1e-08  Score=100.56  Aligned_cols=281  Identities=14%  Similarity=0.003  Sum_probs=151.0

Q ss_pred             CChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCC-cCCCCCCCHHHHHHHH
Q 011777          162 NSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDP-YHGSFGSDAARYAQDL  240 (477)
Q Consensus       162 ~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l  240 (477)
                      .||+.||.+++...  ..++++|+..+..+-|+........  ...+.......+..++++.. .....+      .+++
T Consensus       221 ~SGs~AN~aV~~AL--l~PGD~IL~ldl~~GGHlshg~~~~--~g~~vs~sG~~~~~vpY~~d~~~g~ID------yd~l  290 (586)
T PLN02271        221 YSCTSANFAVYTGL--LLPGDRIMGLDSPSGGHMSHGYYTP--GGKKVSGASIFFESLPYKVNPQTGYID------YDKL  290 (586)
T ss_pred             ccHHHHHHHHHHHh--cCCCCEEEEecCCCCCchhcccccc--cccccccccceEEEEEcccccccCccC------HHHH
Confidence            39999999988654  3477889888775555433211000  00000000011233332221 111111      4777


Q ss_pred             HHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec
Q 011777          241 QDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA  320 (477)
Q Consensus       241 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s  320 (477)
                      ++...   ..++++||+......      ..-.+++++++|+++|++|++|-.|. .|.-....+  ...-...|+++++
T Consensus       291 ek~a~---~~rPKLII~g~Sayp------r~~D~~~i~eIAdevGA~LmvD~AH~-aGLIa~g~~--~sP~~~aDvvt~T  358 (586)
T PLN02271        291 EEKAL---DFRPKILICGGSSYP------REWDYARFRQIADKCGAVLMCDMAHI-SGLVAAKEC--VNPFDYCDIVTST  358 (586)
T ss_pred             HHHhh---hcCCeEEEECchhcc------CcCCHHHHHHHHHHcCCEEEEECccc-ccccccCcC--CCCCcCCcEEEeC
Confidence            77443   257788888553332      22228999999999999999999987 333211111  1111136888755


Q ss_pred             --ccccCccceEEEEeCHH--------------------HHHhhcccccccCCCCcHHH-HHHHHHHHHhhch---hhHH
Q 011777          321 --KGIGNGLPLGAVVTTPE--------------------IANVMAQKIQFNTFGGNPVC-SAGGLAVLRVIDK---ERRQ  374 (477)
Q Consensus       321 --K~lg~G~pig~v~~~~~--------------------~~~~~~~~~~~~t~~~~~~~-~aaa~a~l~~l~~---~~~~  374 (477)
                        |+|.|.-. |.++.+++                    +.+.+......+..+++... +++...+++.+..   .++.
T Consensus       359 THKtLrGPrG-G~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya  437 (586)
T PLN02271        359 THKSLRGPRG-GIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYM  437 (586)
T ss_pred             CcccCCCCCc-eEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHH
Confidence              99976322 77777754                    33333322222333333222 3333345665443   3466


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-------CCC
Q 011777          375 AHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-------LHG  447 (477)
Q Consensus       375 ~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~  447 (477)
                      +++.++.+.|.+.|.+.  .+.++..-. ...++.+++...       ........+.|.+-||.+....       ...
T Consensus       438 ~QVv~NAkaLA~~L~~~--G~~vv~ggT-dnHlvLvDl~~~-------g~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~p  507 (586)
T PLN02271        438 QQVKKNAQALASALLRR--KCRLVTGGT-DNHLLLWDLTTL-------GLTGKNYEKVCEMCHITLNKTAIFGDNGTISP  507 (586)
T ss_pred             HHHHHHHHHHHHHHHHC--CCeEeeCCC-CcceeeecCccc-------CCCHHHHHHHHHHcCeEeccccCCCCCCCCCC
Confidence            67777777777777654  233332111 244566666321       1113445566667799885431       112


Q ss_pred             CEEEEeCCCCC----cHHHHHHHHHHHHHHHh
Q 011777          448 NVFRIKPPMCF----TKDDADFLVDALDYSMS  475 (477)
Q Consensus       448 ~~iRi~p~~~~----t~e~i~~~l~~l~~~l~  475 (477)
                      +-|||..|..+    .++|+++..+.|.++++
T Consensus       508 sGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~  539 (586)
T PLN02271        508 GGVRIGTPAMTSRGCLESDFETIADFLLRAAQ  539 (586)
T ss_pred             CcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence            45888655443    56888888888877764

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.16  E-value=2.3e-08  Score=98.91  Aligned_cols=320  Identities=14%  Similarity=0.055  Sum_probs=182.7

Q ss_pred             eecCCcccccCCCCCHHHHHHHHHHHhhc----------cccccccCChHHHHHHHHHHhhCCC--CCCEEEEeCChHHH
Q 011777          100 DAFAGIVTVSCGHCHPDVLNAIFEQSKLL----------QHATTIYLHHAIADFAEALASKMPG--NLKVVYFVNSGTEA  167 (477)
Q Consensus       100 D~~~g~~~~~lGh~~p~v~~Av~~~l~~~----------~~~~~~~~~~~~~~l~~~La~~~~~--~~~~v~~~~sGseA  167 (477)
                      .|..|-..     -+++|.+++.+.+.+.          .|.+.. ......+..+.|.+++..  +.+.+++..|||.+
T Consensus         7 nF~aGPa~-----lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~-F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~   80 (364)
T PRK12462          7 NFSGGPGA-----LPDTVLEQVRQAVVELPETGLSVLGMSHRSSW-FSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQ   80 (364)
T ss_pred             eecCCCcC-----CCHHHHHHHHHHHhcccccCccccccccccHH-HHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHH
Confidence            45555542     3789999998777652          222211 134456777778887753  45556666779999


Q ss_pred             HHHHHHHHHhccCCceEE-EEccCccCCcccccccccCCCCCCCCCCCCeeeec--CCCCcCCCCCCCHHHHHHHHHHHH
Q 011777          168 NELAMLMARLSTGNLGMI-ALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVV--NPDPYHGSFGSDAARYAQDLQDHI  244 (477)
Q Consensus       168 ~~~Al~~ar~~~~~~~ii-~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~le~~i  244 (477)
                      .++++.-...  ++++++ +...++.|....-.+..-.          .+..+.  ....+.....      .+++    
T Consensus        81 ~ea~~~Nll~--~g~~~~~~~~tG~fg~r~~~ea~~~g----------~v~~~~~~~~~~~~~~p~------~~~~----  138 (364)
T PRK12462         81 FSMIPMNFSR--PGAAAPEYVTTGYWSRKAIGEASRVA----------AMRVVWDGAASGYRTLPS------LAEL----  138 (364)
T ss_pred             HHHHHHHcCC--CCCcEEEEEeCCHHHHHHHHHHHhcC----------CceEecCcCCCCCCcCCC------HHHh----
Confidence            9988874432  344454 5555655543322221100          011110  0001100000      1222    


Q ss_pred             hccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--cc
Q 011777          245 DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KG  322 (477)
Q Consensus       245 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~  322 (477)
                      + . ..+.+.|.+..+...+|+..+         ++.+.+++++|+|-+-+ ++  + ..+.++.+    |++..|  |+
T Consensus       139 ~-~-~~d~~~v~~t~NETstGv~~~---------~~~~~~~~llvvD~sS~-~~--s-~pid~~~~----dvi~agsQKn  199 (364)
T PRK12462        139 D-W-DARAPFRHYVSNETVEGLQFP---------DAAGLPDSPLIADMSSD-FM--S-RPFDVEAY----GMVYAHAQKN  199 (364)
T ss_pred             c-c-CCCCcEEEEccCCCCceEecC---------cccccCCCeEEEEcCch-hh--C-CCCChHHc----cEEEeecccc
Confidence            1 1 134566777776666775553         23334799999998866 32  2 34444444    777554  99


Q ss_pred             ccCccceEEEEeCHHHHHhhccc-----------ccccCCCCc-HHHHHHHHHHHHhhchh--h---HHHHHHHHHHHHH
Q 011777          323 IGNGLPLGAVVTTPEIANVMAQK-----------IQFNTFGGN-PVCSAGGLAVLRVIDKE--R---RQAHCADVGSHLL  385 (477)
Q Consensus       323 lg~G~pig~v~~~~~~~~~~~~~-----------~~~~t~~~~-~~~~aaa~a~l~~l~~~--~---~~~~~~~~~~~l~  385 (477)
                      +| .-.++.++.+++.++.....           ....+++.+ ....-+...+++.+.++  .   ..++-++..+.++
T Consensus       200 lg-P~Gltvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly  278 (364)
T PRK12462        200 LG-PAGVTVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLY  278 (364)
T ss_pred             CC-CCceEEEEECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            98 44578889999988665431           122455544 45555666788888665  3   3444455555566


Q ss_pred             HHHHHHHHhCCCceeeeccceeE-EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHH
Q 011777          386 GRLRTLQERHDIIGDVRGRGLMV-GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDAD  464 (477)
Q Consensus       386 ~~L~~l~~~~~~~~~v~g~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~  464 (477)
                      +.+.++..-+....+..-++.|. .+.+        ++.....++.+.+.++|+....|-..-+-+|.+.=-.++.|+++
T Consensus       279 ~~id~~~~~~~~~~~~~~RS~mnv~f~~--------~~~~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~  350 (364)
T PRK12462        279 ATLDALNEVIDCHAHRAARSTMNVAFRF--------RQPRLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVS  350 (364)
T ss_pred             HHHHhCCCcccCCCChhhcCcceEEEEc--------CCHHHHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHHHHH
Confidence            55555421122222333344443 2222        23345678999999999988766332244899887888999999


Q ss_pred             HHHHHHHHHHh
Q 011777          465 FLVDALDYSMS  475 (477)
Q Consensus       465 ~~l~~l~~~l~  475 (477)
                      .+++-+++.-+
T Consensus       351 ~L~~fm~~f~~  361 (364)
T PRK12462        351 RLCAFLKDFAI  361 (364)
T ss_pred             HHHHHHHHHHH
Confidence            99999987654

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.15  E-value=5.6e-09  Score=102.31  Aligned_cols=195  Identities=15%  Similarity=0.034  Sum_probs=132.6

Q ss_pred             cccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCC
Q 011777          133 TIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP  212 (477)
Q Consensus       133 ~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  212 (477)
                      .+..+|....+...+++..+.  ..++.++||..|+..|+....  ...++||.+...|.|..........    +    
T Consensus        72 sr~~nPt~~~le~~iaal~ga--~~~l~fsSGmaA~~~al~~L~--~~g~~iV~~~~~Y~gT~~~l~~~~~----~----  139 (409)
T KOG0053|consen   72 SRSGNPTRDVLESGIAALEGA--AHALLFSSGMAAITVALLHLL--PAGDHIVATGDVYGGTLRILRKFLP----K----  139 (409)
T ss_pred             ccCCCCchHHHHHHHHHHhCC--ceEEEecccHHHHHHHHHHhc--CCCCcEEEeCCCcccHHHHHHHHHH----H----
Confidence            345578888888889888744  569999999999999998654  3567899999999876433222211    0    


Q ss_pred             CCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcC
Q 011777          213 QGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADE  292 (477)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  292 (477)
                       .|+.....        +.+   .+++++++++    +++.+|.+|.+.|+...++.    +++|+++|+++|+++|+|+
T Consensus       140 -~gie~~~v--------d~~---~~~~~~~~i~----~~t~~V~~ESPsNPll~v~D----I~~l~~la~~~g~~vvVDn  199 (409)
T KOG0053|consen  140 -FGGEGDFV--------DVD---DLKKILKAIK----ENTKAVFLESPSNPLLKVPD----IEKLARLAHKYGFLVVVDN  199 (409)
T ss_pred             -hCceeeee--------chh---hHHHHHHhhc----cCceEEEEECCCCCcccccc----HHHHHHHHhhCCCEEEEeC
Confidence             12211110        000   1355666665    37999999998888776666    9999999999999999999


Q ss_pred             cccCccCCCCCCccccccCCCcceee--ecccccCc--cceEEEEeC-HHHHHhhcccccccCCCCcHHHHHHHHHHHH
Q 011777          293 VQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNG--LPLGAVVTT-PEIANVMAQKIQFNTFGGNPVCSAGGLAVLR  366 (477)
Q Consensus       293 v~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G--~pig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~  366 (477)
                      ...+..       -++-...-.||++  .+|-|+|.  +-.|.++.+ +++...+......-.+..+|+.+.-...-++
T Consensus       200 Tf~~p~-------~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rglk  271 (409)
T KOG0053|consen  200 TFGSPY-------NQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLSRGLK  271 (409)
T ss_pred             CcCccc-------ccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHHhcCcc
Confidence            876431       1233334478885  66999983  666888885 7887777655444455667777665554443

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.15  E-value=2.8e-08  Score=109.41  Aligned_cols=302  Identities=15%  Similarity=0.131  Sum_probs=172.5

Q ss_pred             CCHHHHHHHHHHHhhccccccccCC-------hHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhcc-CCceE
Q 011777          113 CHPDVLNAIFEQSKLLQHATTIYLH-------HAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLST-GNLGM  184 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~~~~-------~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~-~~~~i  184 (477)
                      .++.|.+++.+....+..++ .|..       +...++...++++++.+.+++-++.++|.+.++++...+... ++++|
T Consensus       117 ~P~~v~~~i~~~~~~~Tayt-PYqaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~~~~g~~~~V  195 (993)
T PLN02414        117 VPPVILRNILENPGWYTQYT-PYQAEIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKKF  195 (993)
T ss_pred             CCHHHHHHHHhChHHHhhcC-CCchHHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHhcccCCCCEE
Confidence            45666688877665432222 2222       235678888999998877889999999999997775443322 34567


Q ss_pred             EEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCC
Q 011777          185 IALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVG  264 (477)
Q Consensus       185 i~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~  264 (477)
                      ++.+..|...... +....        ...|+..+..+.              ++.. .    ..+.++++++ .+.+..
T Consensus       196 lVs~~~hP~~~~v-~~t~a--------~~~GieV~~v~~--------------~~~~-~----~~~~v~~vlv-q~P~~~  246 (993)
T PLN02414        196 LIASNCHPQTIDV-CQTRA--------DGLGLEVVVADE--------------KDFD-Y----SSGDVCGVLV-QYPATD  246 (993)
T ss_pred             EEcCccCHhHHHH-HHHhh--------hhcCCEEEEecc--------------hhhc-c----ccCceEEEEE-ecCCCC
Confidence            7766666443222 21110        012333332221              1100 0    1235666653 334557


Q ss_pred             CeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec-cccc-----CccceEEEEeCHHH
Q 011777          265 GAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA-KGIG-----NGLPLGAVVTTPEI  338 (477)
Q Consensus       265 G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s-K~lg-----~G~pig~v~~~~~~  338 (477)
                      |.+.+    +++|.++|+++|+++++ -++. ++-.+  .-.  --.+..|+++.+ ..++     ||...|++.+++++
T Consensus       247 G~v~d----v~~I~~~ah~~GaL~iV-aad~-lal~~--l~~--pge~GADi~vgsgqKwg~P~G~GGP~aGflavr~~~  316 (993)
T PLN02414        247 GEVLD----YAEFVKNAHANGVKVVM-ATDL-LALTM--LKP--PGEWGADIVVGSAQRFGVPMGYGGPHAAFLATSQEY  316 (993)
T ss_pred             eEEcC----HHHHHHHHHHcCCEEEE-EECH-HHhcC--CCC--HhhccCcEEEECCCccccCCCCCCCCeeEEEECHHH
Confidence            87777    99999999999999999 3332 22222  111  112345777542 3333     46569999999988


Q ss_pred             HHhhcccc-------ccc-----------------CCCCcHHHHHHHHHHHH-----hhch---hhHHHHHHHHHHHHHH
Q 011777          339 ANVMAQKI-------QFN-----------------TFGGNPVCSAGGLAVLR-----VIDK---ERRQAHCADVGSHLLG  386 (477)
Q Consensus       339 ~~~~~~~~-------~~~-----------------t~~~~~~~~aaa~a~l~-----~l~~---~~~~~~~~~~~~~l~~  386 (477)
                      ...+....       .+.                 ....|..+..+..+++.     .+..   ++..+++..+..++++
T Consensus       317 ~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~  396 (993)
T PLN02414        317 KRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAA  396 (993)
T ss_pred             HhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            76554210       000                 01223322222222222     2122   3445677778888888


Q ss_pred             HHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHH
Q 011777          387 RLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFL  466 (477)
Q Consensus       387 ~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~  466 (477)
                      +|.++  .+..... +-.+ .+.+.+        +   ...++.+.|.++||.+....  .+.+|+++...+|++|||.+
T Consensus       397 ~L~~~--G~~~~~~-~~f~-~vt~~~--------~---~~~~v~~~L~~~gI~l~~~~--~~~lrvs~~e~~T~edId~L  459 (993)
T PLN02414        397 GLKKL--GFQVQSL-PFFD-TVKVKC--------S---DADAIADAAAKVGINLRVVD--ANTVTVSFDETTTLEDVDKL  459 (993)
T ss_pred             HHhhc--CCccCCC-CCcC-eEEEec--------C---CHHHHHHHHHHCCCeeEEec--CCeEEEEeeccCCHHHHHHH
Confidence            88653  1222221 1111 122222        1   12578899999999887543  56899999999999999999


Q ss_pred             HHHHH
Q 011777          467 VDALD  471 (477)
Q Consensus       467 l~~l~  471 (477)
                      ++.|.
T Consensus       460 ~~~l~  464 (993)
T PLN02414        460 FKVFA  464 (993)
T ss_pred             HHHHc
Confidence            99996

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.05  E-value=7.4e-08  Score=106.52  Aligned_cols=275  Identities=14%  Similarity=0.124  Sum_probs=160.0

Q ss_pred             HHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccC--CceEEEEccCccCCcccccccccCCCCCCCCCCCCee
Q 011777          140 IADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTG--NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIH  217 (477)
Q Consensus       140 ~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~--~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~  217 (477)
                      ..++...++++++.+..++-+..++|.+.++++...+ +.+  +++|++.+..|.... .++....        ...|+.
T Consensus       123 l~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~-~~~~~~~~vlv~~~~hP~~~-~v~~t~a--------~~~G~e  192 (954)
T PRK05367        123 LLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKR-VSKSKSNRFFVDDDVHPQTL-DVLRTRA--------EPLGIE  192 (954)
T ss_pred             HHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhh-hccCCCCEEEEcCccCHHHH-HHHHHHH--------HhCCCE
Confidence            4577888899987777788999999999996665443 443  367777666664332 2221110        012444


Q ss_pred             eecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCc
Q 011777          218 HVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGF  297 (477)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gf  297 (477)
                      .+..+..             +++    +   .++++++++. +.+..|.+.+    +++|.++|+++|+++++|-.+..+
T Consensus       193 v~~~~~~-------------~d~----~---~~~~~~vlvq-~p~~~G~i~d----~~~i~~~ah~~Gal~~vda~~~Al  247 (954)
T PRK05367        193 VVVGDAA-------------KAL----D---HDDVFGVLLQ-YPGTSGEVRD----YTALIAAAHARGALVAVAADLLAL  247 (954)
T ss_pred             EEEecCc-------------cCC----C---cccEEEEEEe-cCCCCeeecc----HHHHHHHHHHcCCEEEEEehhhhc
Confidence            3332211             111    1   1356666543 3466787776    999999999999999999865322


Q ss_pred             cCCCCCCccccccCCCcceeeec--cc---cc-CccceEEEEeCHHHHHhhcccccc------c----C-----------
Q 011777          298 GRTGSHYWGFETQGVIPDIVTMA--KG---IG-NGLPLGAVVTTPEIANVMAQKIQF------N----T-----------  350 (477)
Q Consensus       298 gr~G~~~~~~~~~gv~pDivt~s--K~---lg-~G~pig~v~~~~~~~~~~~~~~~~------~----t-----------  350 (477)
                      +. . .    .--....|+++.+  |.   +| ||.-.|++.+++++...+....-+      +    .           
T Consensus       248 ~~-l-~----~pge~GaDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiR  321 (954)
T PRK05367        248 TL-L-T----PPGEMGADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIR  321 (954)
T ss_pred             cC-C-C----ChhhcCCCEEEeeCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCCccccccccccccccc
Confidence            21 1 0    1112345777543  43   22 345689999999988776532111      0    0           


Q ss_pred             C---CCcH---HHHHHHHHH--HHhhchh---hHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCC
Q 011777          351 F---GGNP---VCSAGGLAV--LRVIDKE---RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEK  419 (477)
Q Consensus       351 ~---~~~~---~~~aaa~a~--l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~  419 (477)
                      +   ..|.   .+..+..+.  +..+..+   +..+++..+..+++++|.+.  .+.....    ..+-.+.+..     
T Consensus       322 rekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~--G~~~~~~----~~f~~~~~~~-----  390 (954)
T PRK05367        322 REKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRAL--GLEVVHD----SFFDTLTVEV-----  390 (954)
T ss_pred             ccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc--CcccCCC----CCCCeEEEeC-----
Confidence            0   1111   111112222  2333333   34566777777888777552  2222211    1111122211     


Q ss_pred             CccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHH
Q 011777          420 TPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALD  471 (477)
Q Consensus       420 ~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~  471 (477)
                       +  ....++.+.|+++||.+....  ++.+|++|....|++||+.+++.|.
T Consensus       391 -~--~~~~~i~~~l~~~gi~~~~~~--~~~l~is~~e~~t~~did~l~~~l~  437 (954)
T PRK05367        391 -G--GDAAAVLARALAAGINLRRVD--DDHVGISLDETTTREDLAALLAVFG  437 (954)
T ss_pred             -C--CCHHHHHHHHHHCCceecccc--CCEEEEEecccCCHHHHHHHHHHHc
Confidence             1  125679999999999985432  5689999999999999999999996

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.04  E-value=2.5e-07  Score=89.48  Aligned_cols=324  Identities=15%  Similarity=0.121  Sum_probs=179.7

Q ss_pred             CCCHHHHHHHHHHHhh-ccccc--ccc-----CChHHHHH-HHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCc
Q 011777          112 HCHPDVLNAIFEQSKL-LQHAT--TIY-----LHHAIADF-AEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNL  182 (477)
Q Consensus       112 h~~p~v~~Av~~~l~~-~~~~~--~~~-----~~~~~~~l-~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~  182 (477)
                      +..|.|.+|+-..+.+ +....  -+|     .-+..+.| .++..++++.+.-+| =-.||+.||.+++.....  +++
T Consensus        37 ~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~anV-QPhSGs~AN~av~~All~--pGD  113 (413)
T COG0112          37 FTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYANV-QPHSGSQANQAVYLALLQ--PGD  113 (413)
T ss_pred             cCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCcccc-CCCCchHHHHHHHHHHcC--CCC
Confidence            3679999998776653 22111  111     11223344 344455565544444 346899999988875543  677


Q ss_pred             eEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCC
Q 011777          183 GMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQG  262 (477)
Q Consensus       183 ~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~  262 (477)
                      +|+..+-..-|+..-....+        ....-+..++++....     +..-..|+++++...   .+++.||+=    
T Consensus       114 timgm~l~~GGHltHg~~v~--------~sG~~~~~v~Y~vd~e-----t~~IDyD~~~k~a~e---~kPK~ii~G----  173 (413)
T COG0112         114 TIMGLDLSHGGHLTHGSPVN--------FSGKLFNVVSYGVDPE-----TGLIDYDEVEKLAKE---VKPKLIIAG----  173 (413)
T ss_pred             eEecccCCCCCcccCCCCCC--------ccceeEEeEecccccc-----cCccCHHHHHHHHHH---hCCCEEEEC----
Confidence            88776544433322111111        1111122333222111     011114777777763   355666652    


Q ss_pred             CCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCH-HH
Q 011777          263 VGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTP-EI  338 (477)
Q Consensus       263 ~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~-~~  338 (477)
                        +..-+..-.+++++++|++.|++|.+|-++- |+--.|...-.+.    ..|++|-+  |.|-| .|-|.+++++ ++
T Consensus       174 --~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~----~AdvVTtTTHKTlrG-PrGG~Il~~~eel  246 (413)
T COG0112         174 --GSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLP----HADVVTTTTHKTLRG-PRGGIILTNDEEL  246 (413)
T ss_pred             --ccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCC----ccceEeCCcccCCCC-CCceEEEeccHHH
Confidence              2233333448999999999999999998753 4433341111111    25788644  99875 3558888884 88


Q ss_pred             HHhhcccccccCCCCcHHHHHHHH-HHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEee
Q 011777          339 ANVMAQKIQFNTFGGNPVCSAGGL-AVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVT  414 (477)
Q Consensus       339 ~~~~~~~~~~~t~~~~~~~~aaa~-a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~  414 (477)
                      .+.+.+....++.+++.+-..|+. .++....+   ++..+++.++.+.|.+.|.+.  .+.++..- -...++.+++..
T Consensus       247 ~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~--G~~vvsGg-TdnHl~lVDl~~  323 (413)
T COG0112         247 AKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER--GFKVVSGG-TDNHLVLVDLRS  323 (413)
T ss_pred             HHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc--CCeEecCC-ccceEEEEEccc
Confidence            888877655666666544444443 33443333   345677777777787777663  23333211 123455666652


Q ss_pred             CCCCCCccHHHHHHHHHHHHHcCceeeccC--------CCCCEEEEeCCCCC----cHHHHHHHHHHHHHHHh
Q 011777          415 DRKEKTPAKAETAVLFEKLRELGVLVGKGG--------LHGNVFRIKPPMCF----TKDDADFLVDALDYSMS  475 (477)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------~~~~~iRi~p~~~~----t~e~i~~~l~~l~~~l~  475 (477)
                      ..       .........|.+-||.+....        ...+-|||..|..+    .++|+++..+.+.+++.
T Consensus       324 ~~-------~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~  389 (413)
T COG0112         324 KG-------LTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLD  389 (413)
T ss_pred             CC-------CCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHh
Confidence            11       113344556666788886441        11245898766554    56788888888888775

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.03  E-value=8.3e-08  Score=98.20  Aligned_cols=252  Identities=17%  Similarity=0.094  Sum_probs=144.8

Q ss_pred             CCHHHHHHHHHHHhhcccccccc--CChHHHHHHHHHHhhCCC-CCCEEEEeCChHHHHHHHHHHHHhccC----C----
Q 011777          113 CHPDVLNAIFEQSKLLQHATTIY--LHHAIADFAEALASKMPG-NLKVVYFVNSGTEANELAMLMARLSTG----N----  181 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~~--~~~~~~~l~~~La~~~~~-~~~~v~~~~sGseA~~~Al~~ar~~~~----~----  181 (477)
                      .++...+++...+.+.......+  ......++...+++++.. ....-.||+||||||..|+.++|....    +    
T Consensus        74 ~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~  153 (460)
T COG0076          74 VPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGK  153 (460)
T ss_pred             CHHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            56777777777766532211122  234455677777777754 223578999999999999999976431    1    


Q ss_pred             ---ceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCee-EEEe
Q 011777          182 ---LGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA-GFIA  257 (477)
Q Consensus       182 ---~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a-~vi~  257 (477)
                         ...|++....|-...-+....+.          +...++.... +...+      .++|++.|+..   .+. +|+.
T Consensus       154 ~~~~P~ii~s~~aH~s~~Kaa~~lG~----------~~~~v~~~~~-~~~id------~~~l~~~i~~~---t~~g~vV~  213 (460)
T COG0076         154 PGGKPNIVCSETAHFSFEKAARYLGL----------GLRRVPTVPT-DYRID------VDALEEAIDEN---TIGGVVVG  213 (460)
T ss_pred             cCCCCeEEecCcchhHHHHHHHHhCC----------CceeEEeccC-ccccC------HHHHHHHHHhh---ccCceEEE
Confidence               11345455566544333333221          1112211110 11122      58899988732   222 2555


Q ss_pred             cccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCC-CCC--CccccccCC-Ccceeeec--ccccCccceEE
Q 011777          258 ETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRT-GSH--YWGFETQGV-IPDIVTMA--KGIGNGLPLGA  331 (477)
Q Consensus       258 epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~-G~~--~~~~~~~gv-~pDivt~s--K~lg~G~pig~  331 (477)
                      ..-....|.+-+    +++|.++|+++|+++++|.++.||-.. ...  .|.   +++ ..|.++++  |-....++.|+
T Consensus       214 ~aGtT~~G~iDd----i~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~---f~l~~vdSIt~d~HK~g~aP~~~G~  286 (460)
T COG0076         214 TAGTTDTGSIDD----IEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWD---FGLEGVDSITVDGHKYGLAPIGCGV  286 (460)
T ss_pred             EecCCCCCccCC----HHHHHHHHHHcCCcEEEEccccceeecccCccchhh---cCCCCceEEEECcccccCCCCCceE
Confidence            444455566666    999999999999999999999987421 000  111   233 34666654  77766788899


Q ss_pred             EEeCHH--HHHhhcccc---cc-----cCC--CCcHHHHHHHHHHHHhhchhh---HHHHHHHHHHHHHHHHHHH
Q 011777          332 VVTTPE--IANVMAQKI---QF-----NTF--GGNPVCSAGGLAVLRVIDKER---RQAHCADVGSHLLGRLRTL  391 (477)
Q Consensus       332 v~~~~~--~~~~~~~~~---~~-----~t~--~~~~~~~aaa~a~l~~l~~~~---~~~~~~~~~~~l~~~L~~l  391 (477)
                      ++.+.+  +.+.+....   .+     .|.  +.+.-..++..+.++.+..++   +.++..++.+++.++|++.
T Consensus       287 il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~  361 (460)
T COG0076         287 VLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKL  361 (460)
T ss_pred             EEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhC
Confidence            998765  444333110   10     011  122334555667777775554   4455557777777777665

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=98.99  E-value=2.3e-07  Score=90.48  Aligned_cols=297  Identities=18%  Similarity=0.207  Sum_probs=185.7

Q ss_pred             ChHHHHHHHHHHhhCCCCCCEEEE-eCChHHHHHHHHHHHHhcc-----CCceEEEEccCccCCcccccccccCCCCCCC
Q 011777          137 HHAIADFAEALASKMPGNLKVVYF-VNSGTEANELAMLMARLST-----GNLGMIALRNAYHGGSSGTIGLTALNTWKYP  210 (477)
Q Consensus       137 ~~~~~~l~~~La~~~~~~~~~v~~-~~sGseA~~~Al~~ar~~~-----~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  210 (477)
                      .+...+|.++|++..  +++.|.+ -|+|++.=.+.+.+.|+|.     +..+++....+-||.-.+..++.        
T Consensus       108 l~li~~Lq~~L~~IT--G~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~--------  177 (496)
T COG1003         108 LELIYELQEWLKEIT--GMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMA--------  177 (496)
T ss_pred             HHHHHHHHHHHHHhc--CCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhc--------
Confidence            355678999999988  4555544 5689999888888888873     23345555568899866555543        


Q ss_pred             CCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEE
Q 011777          211 IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA  290 (477)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  290 (477)
                          |+..+.++....+..+      ++||++.+.    +++|++++... ++-|+.   ++-+++|.++.+++|..|..
T Consensus       178 ----G~~VV~V~~~~~G~VD------lddLk~k~~----~~~AalMiTnP-sT~GvF---E~~I~ei~~ivH~~Gg~vY~  239 (496)
T COG1003         178 ----GFKVVVVKCDENGNVD------LDDLRAKAE----DNLAALMITNP-STLGVF---EEDIREICEIVHEAGGQVYY  239 (496)
T ss_pred             ----CceEEEEecCCCCCcc------HHHHHHHhc----cceeEEEeccC-cccccc---hhhHHHHHHHHHHcCCEEEe
Confidence                4555555444444443      688888776    67887777543 344543   34488999999999999999


Q ss_pred             cCc----ccCccCCCCCCccccccCCCccee------eecccccC-ccceEEEEeCHHHHHhhcc----cc---------
Q 011777          291 DEV----QTGFGRTGSHYWGFETQGVIPDIV------TMAKGIGN-GLPLGAVVTTPEIANVMAQ----KI---------  346 (477)
Q Consensus       291 DEv----~~gfgr~G~~~~~~~~~gv~pDiv------t~sK~lg~-G~pig~v~~~~~~~~~~~~----~~---------  346 (477)
                      |-+    +-|..|.|.  +       -.|++      ||+=.-|| |...|-|.++.++...+..    ..         
T Consensus       240 DGANlNA~vG~~rPGd--~-------G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~  310 (496)
T COG1003         240 DGANLNAIVGLARPGD--M-------GFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYD  310 (496)
T ss_pred             cCcchhhhhccccccc--c-------ccceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCC
Confidence            975    445556661  2       23444      34444454 5778888888887766543    00         


Q ss_pred             ------cccCCCCcHHHHHHHHHHHHhhchhhHH---HHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeC-C
Q 011777          347 ------QFNTFGGNPVCSAGGLAVLRVIDKERRQ---AHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTD-R  416 (477)
Q Consensus       347 ------~~~t~~~~~~~~aaa~a~l~~l~~~~~~---~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~-~  416 (477)
                            ....|.||.....-+.+.+..+..+.+.   +...-+..|+..+|+.   .|+++...  .. .+.=+++-+ +
T Consensus       311 ~~~s~g~~~a~~Gs~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~---~y~~~y~~--~~-~~~HE~ild~r  384 (496)
T COG1003         311 GKKSIGVSAAPYGSASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKG---YYPVPYTG--EN-RVAHECILDAR  384 (496)
T ss_pred             CCccceeeccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhh---cCccccCC--CC-cceeEEEeech
Confidence                  1123445555555666777766655442   3444467788887765   34433221  11 122222211 1


Q ss_pred             CCCCccHHHHHHHHHHHHHcCceeeccCC---CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          417 KEKTPAKAETAVLFEKLRELGVLVGKGGL---HGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       417 ~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ..+...+....+++++|++.|+.-.+...   -.+.+.|-|.=.-+++++|+++++|.++.++
T Consensus       385 ~l~~~~Gv~~~DvAKrLlD~GfHaPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~E  447 (496)
T COG1003         385 PLKKETGVRALDVAKRLLDYGFHAPTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREE  447 (496)
T ss_pred             HhHhhcCCcHHHHHHHHHhcCCCCCcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHH
Confidence            11122234567899999999997644311   1367888888888999999999999877643

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=98.87  E-value=8e-07  Score=89.20  Aligned_cols=229  Identities=19%  Similarity=0.195  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHhhCCCC-------CCEEEEeCChHHHHHHHHHHHHhcc-------C----CceEEEEccCccCCcccccc
Q 011777          139 AIADFAEALASKMPGN-------LKVVYFVNSGTEANELAMLMARLST-------G----NLGMIALRNAYHGGSSGTIG  200 (477)
Q Consensus       139 ~~~~l~~~La~~~~~~-------~~~v~~~~sGseA~~~Al~~ar~~~-------~----~~~ii~~~~~yhG~~~~~~~  200 (477)
                      ...++.++|+++++.+       ...-+||+||||||..|+..||...       +    .+.+++....-|-...-+..
T Consensus        80 ~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~  159 (373)
T PF00282_consen   80 IEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAAR  159 (373)
T ss_dssp             HHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHHH
T ss_pred             chHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHhcc
Confidence            3456677777777543       1357899999999999999997642       1    22355555545644333333


Q ss_pred             cccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc-CCCC-eeEEEecccCCCCCeeeCCchhHHHHH
Q 011777          201 LTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG-TSGK-VAGFIAETIQGVGGAVELAPGYLKLVY  278 (477)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~-~~~~-~a~vi~epi~~~~G~~~~~~~~l~~l~  278 (477)
                      ..+.          ++..++...  .+.++      .++|++.|+.. ..+. +.+|+..--....|.+-+    +++|.
T Consensus       160 ~lGl----------g~~~I~~~~--~~~md------~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~----l~~i~  217 (373)
T PF00282_consen  160 ILGL----------GVRKIPTDE--DGRMD------IEALEKALEKDIANGKTPFAVVATAGTTNTGAIDP----LEEIA  217 (373)
T ss_dssp             HTTS----------EEEEE-BBT--TSSB-------HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-S----HHHHH
T ss_pred             eeee----------EEEEecCCc--chhhh------HHHhhhhhcccccccccceeeeccCCCcccccccC----HHHHh
Confidence            3221          233333222  12222      57787777632 1223 335555544445677766    99999


Q ss_pred             HHHHHhCcEEEEcCcccCccCCCCCCccccccCC-Ccceeee--cccccCccceEEEEeCHH--HHHhhcc----cc---
Q 011777          279 DIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV-IPDIVTM--AKGIGNGLPLGAVVTTPE--IANVMAQ----KI---  346 (477)
Q Consensus       279 ~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv-~pDivt~--sK~lg~G~pig~v~~~~~--~~~~~~~----~~---  346 (477)
                      ++|+++++++++|.++.|...-- ..+-.-..++ ..|-+++  -|.++..++.|+++.+.+  +...+..    ..   
T Consensus       218 ~i~~~~~~wlHVDaA~gg~~~~~-~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~  296 (373)
T PF00282_consen  218 DICEKYNIWLHVDAAYGGSALLS-PEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDD  296 (373)
T ss_dssp             HHHHHCT-EEEEEETTGGGGGGH-CTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-
T ss_pred             hhccccceeeeeccccccccccc-ccccccccccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccc
Confidence            99999999999999998732111 1111112233 2466664  499988899999988764  3333311    01   


Q ss_pred             ---------cccCCC-CcHHHHHHHHHHHHhhchhhHH---HHHHHHHHHHHHHHHH
Q 011777          347 ---------QFNTFG-GNPVCSAGGLAVLRVIDKERRQ---AHCADVGSHLLGRLRT  390 (477)
Q Consensus       347 ---------~~~t~~-~~~~~~aaa~a~l~~l~~~~~~---~~~~~~~~~l~~~L~~  390 (477)
                               ...|+. +-.........+|+.+..+.+.   ++..++.+++.++|++
T Consensus       297 ~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~  353 (373)
T PF00282_consen  297 RESDESYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRK  353 (373)
T ss_dssp             SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                     001222 2245555566677766555544   4444455566555544

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PRK15029 arginine decarboxylase; Provisional

Probab=98.86  E-value=1e-06  Score=94.66  Aligned_cols=311  Identities=14%  Similarity=0.081  Sum_probs=161.4

Q ss_pred             HHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccC-CCCCCCCC-CCCe
Q 011777          139 AIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTAL-NTWKYPIP-QGEI  216 (477)
Q Consensus       139 ~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~-~~~~~~~~-~~~~  216 (477)
                      ...+..+..++.++.+ ...|.+||.|.+|.+++..+.  +++++|++ ....|-+...++.+++. +.|-.+.. ..|+
T Consensus       206 ~I~eAq~~aA~~fgA~-~t~FlvNGST~gn~a~i~a~~--~~gd~Vlv-~RN~HKSv~~al~L~ga~Pvyl~P~~~~~Gi  281 (755)
T PRK15029        206 AFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACM--TDNDVVVV-DRNCHKSIEQGLILTGAKPVYMVPSRNRYGI  281 (755)
T ss_pred             HHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHHhc--CCCCEEEe-ecccHHHHHHHHHHcCCeEEEecccccccCC
Confidence            3455556666667553 567777888888886666443  34555555 45556655555555543 33322111 1111


Q ss_pred             eeecCCCCcCCCCCCCHHHHHHHHHHHHhccCC------CC-eeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          217 HHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS------GK-VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~------~~-~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                      ....   +. ..+.      .+.+++.|+....      .+ .++|+..|..  -|++..    +++|.++|+++|+.|+
T Consensus       282 ~~~i---~~-~~~~------~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~ll  345 (755)
T PRK15029        282 IGPI---YP-QEMQ------PETLQKKISESPLTKDKAGQKPSYCVVTNCTY--DGVCYN----AKEAQDLLEKTSDRLH  345 (755)
T ss_pred             ccCC---Cc-cccC------HHHHHHHHHhCchhhhccccCceEEEEECCCC--cceeeC----HHHHHHHHHhcCCeEE
Confidence            1100   00 0011      3677777753210      11 2566666633  355555    8999999999999999


Q ss_pred             EcCcccCccCCCCCCccc-ccc-----C-CCcc-eeeec--ccccCccce-EEEEeCHH--HH--Hhhccc-ccccCCCC
Q 011777          290 ADEVQTGFGRTGSHYWGF-ETQ-----G-VIPD-IVTMA--KGIGNGLPL-GAVVTTPE--IA--NVMAQK-IQFNTFGG  353 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~-~~~-----g-v~pD-ivt~s--K~lg~G~pi-g~v~~~~~--~~--~~~~~~-~~~~t~~~  353 (477)
                      +||++.+.-.-. ..+.- ...     . ..+| +++-|  |.+++ +.- +++-.+..  .+  +.+... ....|-+.
T Consensus       346 vDEAhGah~~F~-~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~a-lTQaS~LHv~~~~~~id~~r~~~~l~~~qSTSP  423 (755)
T PRK15029        346 FDEAWYGYARFN-PIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREGRGAINFSRFNQAYMMHATTSP  423 (755)
T ss_pred             EECccccccccC-ccccccccccccccccCCCceEEEEchhhcccc-hhhhhhheeCCCccccCHHHHHHHHHHHcCCCc
Confidence            999987542222 12221 111     1 3477 66544  87764 222 33333211  11  122211 12234455


Q ss_pred             cHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCC----C---------c-------------------
Q 011777          354 NPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHD----I---------I-------------------  398 (477)
Q Consensus       354 ~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~----~---------~-------------------  398 (477)
                      +.+-++..-.+.+.++.   +++.++..+....+++.++++..++.    .         +                   
T Consensus       424 SY~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  503 (755)
T PRK15029        424 LYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLL  503 (755)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhccccccccccccccccCccccccccccccccccccchhhh
Confidence            66666655555555543   35667777788888888876642100    0         0                   


Q ss_pred             -----eeeecc-----c-------e-e---EEEEEeeCC--CCC--CccHHHHHHHHHHHHHcCceeeccCCCCCEEEEe
Q 011777          399 -----GDVRGR-----G-------L-M---VGMELVTDR--KEK--TPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIK  453 (477)
Q Consensus       399 -----~~v~g~-----g-------~-~---~~i~~~~~~--~~~--~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~  453 (477)
                           ..+-+.     |       . +   .-+.+....  .+.  ...+.-+..+.+.|.++||.+...+  .+.+-+.
T Consensus       504 ~~~~~~~~~~~~~~~~g~~~~~~~~~~lDp~Klti~~~~~g~sG~~~~~gip~~~l~~~L~~~gI~~E~~~--~~~vL~l  581 (755)
T PRK15029        504 TTVQDCWVMHPGESWHGFKDLPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTT--DFQIMFL  581 (755)
T ss_pred             ccccceeeecccccccCcccccccccccCCceEEEEcCCCCCCCcccccCCcHHHHHHHHHHcCCEEEecC--CCeEEEE
Confidence                 000000     0       0 0   000010000  000  0011123467888888899998765  3445566


Q ss_pred             CCCCCcHHHHHHHHHHHHHH
Q 011777          454 PPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       454 p~~~~t~e~i~~~l~~l~~~  473 (477)
                      .+...|++++++++++|.+.
T Consensus       582 ~s~g~t~~~~~~L~~aL~~~  601 (755)
T PRK15029        582 FSMGVTRGKWGTLVNTLCSF  601 (755)
T ss_pred             eCCCCCHHHHHHHHHHHHHH
Confidence            67889999999999998865

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=98.82  E-value=2.3e-07  Score=92.57  Aligned_cols=273  Identities=17%  Similarity=0.128  Sum_probs=140.1

Q ss_pred             eCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCC-cCCCCCCCHHHHHHH
Q 011777          161 VNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDP-YHGSFGSDAARYAQD  239 (477)
Q Consensus       161 ~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  239 (477)
                      ..||+.||.+++.....  ++++|+.++...-|+.........   .+.......+..++++.. .....+      .++
T Consensus        92 p~SGs~An~av~~aLl~--pGD~Im~l~l~~GGHlshg~~~~~---~~~~~~~~~~~~~~y~~d~~~~~ID------~d~  160 (399)
T PF00464_consen   92 PHSGSQANLAVYMALLK--PGDTIMGLSLPHGGHLSHGSSVNF---KKISASGLYFESVPYPVDPDTGLID------YDE  160 (399)
T ss_dssp             -SSHHHHHHHHHHHHT---TT-EEEEEEGGGT--GGGT-TTSH---SBSSHHHHHSEEEEEEB-TTTSSB-------HHH
T ss_pred             cCCchHHHHHHHHHHHh--hcCcEEecChhhcccccccccccc---cccccccceEEEEeeeeecCCCeEC------HHH
Confidence            45999999888775543  678898887544333211111000   000000001222222211 111111      477


Q ss_pred             HHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCcceee
Q 011777          240 LQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIVT  318 (477)
Q Consensus       240 le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDivt  318 (477)
                      ++++++.   .+++.||+....-      +-+-.+++++++|++.|++|++|-.|. |+--.|  .+.-. +. ..|++|
T Consensus       161 l~~~a~~---~kPklIi~G~S~y------~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g--~~~~P-~~-~ADvvt  227 (399)
T PF00464_consen  161 LEKLAKE---HKPKLIICGASSY------PRPIDFKRFREIADEVGAYLMADISHIAGLIAGG--LFPNP-FP-YADVVT  227 (399)
T ss_dssp             HHHHHHH---H--SEEEEE-SST------SS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTT--SS--G-CC-TSSEEE
T ss_pred             HHHHHhh---cCCCEEEECchhc------cCccCHHHHHHHHHhcCcEEEecccccccceehh--eecCc-cc-cceEEE
Confidence            8777763   3567888876432      222236999999999999999998865 442233  22111 12 268887


Q ss_pred             ec--ccccCccceEEEEeC--------------HHHHHhhcccccccCCCCcHHHHHHHH-HHHHhhch---hhHHHHHH
Q 011777          319 MA--KGIGNGLPLGAVVTT--------------PEIANVMAQKIQFNTFGGNPVCSAGGL-AVLRVIDK---ERRQAHCA  378 (477)
Q Consensus       319 ~s--K~lg~G~pig~v~~~--------------~~~~~~~~~~~~~~t~~~~~~~~aaa~-a~l~~l~~---~~~~~~~~  378 (477)
                      +|  |.|.| .+-|.++++              +++.+.+......+..+++.....|++ .++.....   .++.+++.
T Consensus       228 ~sThKtl~G-PrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv  306 (399)
T PF00464_consen  228 GSTHKTLRG-PRGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVV  306 (399)
T ss_dssp             EESSGGG-S-SS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             eeccccccc-cCceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHH
Confidence            66  99975 355888999              788888876544454454444444443 34444322   35667777


Q ss_pred             HHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-------CCCCEEE
Q 011777          379 DVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-------LHGNVFR  451 (477)
Q Consensus       379 ~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~iR  451 (477)
                      ++.+.|.+.|.+.  .+.++..- -...++++++...       ........+.|.+.||.+....       ...+-||
T Consensus       307 ~NAk~La~~L~~~--G~~v~~gg-Td~H~vlvd~~~~-------~~~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlR  376 (399)
T PF00464_consen  307 KNAKALAEALQER--GFKVVTGG-TDNHQVLVDLRSF-------GIDGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLR  376 (399)
T ss_dssp             HHHHHHHHHHHHT--T-EEGGGS--SSSEEEEEGGGG-------TS-HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEE
T ss_pred             HHHHHHHHHHhhC--CcEEEECC-CCCCeEEEEeccc-------ccchHHHHHHHHhcCeeecccccCCCCCCCCCCEEE
Confidence            7888888887764  23333211 1345667776321       1124456678888999986431       1235799


Q ss_pred             EeCCCCC----cHHHHHHHHH
Q 011777          452 IKPPMCF----TKDDADFLVD  468 (477)
Q Consensus       452 i~p~~~~----t~e~i~~~l~  468 (477)
                      |..+..+    .++|++++.+
T Consensus       377 lGT~~lT~rG~~e~dm~~iA~  397 (399)
T PF00464_consen  377 LGTPALTRRGMKEEDMKEIAE  397 (399)
T ss_dssp             EESHHHHHTT--HHHHHHHHH
T ss_pred             ECCHHHHhCCCCHHHHHHHHh
Confidence            9755433    4566655544

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=98.77  E-value=5.8e-07  Score=90.08  Aligned_cols=232  Identities=14%  Similarity=0.106  Sum_probs=124.9

Q ss_pred             ChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccC-CCCCCCCC-CC
Q 011777          137 HHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTAL-NTWKYPIP-QG  214 (477)
Q Consensus       137 ~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~-~~~~~~~~-~~  214 (477)
                      .....+..+..++.++.+ +..|.+||.|.+|.+++..+.  .++++|++-+ ..|-+...++.+++. +.|..+.. ..
T Consensus        65 ~G~I~eAe~~aA~~fGAd-~t~flvnGsT~g~~a~i~a~~--~~gd~VLv~R-N~HkSv~~alil~ga~Pvyi~p~~~~~  140 (417)
T PF01276_consen   65 EGIIKEAEELAARAFGAD-KTFFLVNGSTSGNQAMIMALC--RPGDKVLVDR-NCHKSVYNALILSGAIPVYIPPEDNEY  140 (417)
T ss_dssp             BTHHHHHHHHHHHHHTES-EEEEESSHHHHHHHHHHHHHT--TTTCEEEEET-T--HHHHHHHHHHTEEEEEEEEEE-TT
T ss_pred             ccHHHHHHHHHHHhcCCC-eEEEEecCchHHHHHHHHHhc--CCCCEEEEcC-CcHHHHHHHHHHcCCeEEEecCCcccc
Confidence            345677777778888552 345666777777777776553  3556666655 445554445555432 22222110 01


Q ss_pred             CeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCee---EEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777          215 EIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA---GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD  291 (477)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a---~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  291 (477)
                      |+.....+.    .++      .+.+++.|++. +...+   +||..|..  .|++..    +++|.++|+++++.|++|
T Consensus       141 gi~~~i~~~----~~~------~~~i~~~l~~~-p~~k~~~~vvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~llvD  203 (417)
T PF01276_consen  141 GIIGGISPD----EFN------EEDIEEALKEH-PDAKAPRLVVLTSPTY--YGVCYD----IKEIAEICHKHGIPLLVD  203 (417)
T ss_dssp             S-BEEB-GG----GGS------HHHHHHHHHHC-TTCHCESEEEEESS-T--TSEEE-----HHHHHHHHCCTECEEEEE
T ss_pred             CCccCCChh----hhh------HHHHHHHHHhC-ccccCceEEEEeCCCC--CeEEEC----HHHHHHHhcccCCEEEEE
Confidence            221111000    011      36788888743 23333   66766633  366666    999999999999999999


Q ss_pred             CcccCccCCCCCCccccccCCCcc-------eeeec--ccccCccceEEEEeCHHH---HHhhccc-ccccCCCCcHHHH
Q 011777          292 EVQTGFGRTGSHYWGFETQGVIPD-------IVTMA--KGIGNGLPLGAVVTTPEI---ANVMAQK-IQFNTFGGNPVCS  358 (477)
Q Consensus       292 Ev~~gfgr~G~~~~~~~~~gv~pD-------ivt~s--K~lg~G~pig~v~~~~~~---~~~~~~~-~~~~t~~~~~~~~  358 (477)
                      |++.+.-.-.  .+.-.......|       +++-|  |.+++=-.-+++-.+.+.   .+.+... ....|-+.+.+-+
T Consensus       204 EAhGah~~F~--~lp~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lm  281 (417)
T PF01276_consen  204 EAHGAHFGFH--PLPRSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLM  281 (417)
T ss_dssp             -TT-TTGGCS--GGGTTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHH
T ss_pred             ccccccccCC--CCccchhhccCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHHHHHHcCCChHHHHH
Confidence            9986431111  111122334456       77655  887641122555554331   1222221 2234556666666


Q ss_pred             HHHHHHHHhhc-h--hhHHHHHHHHHHHHHHHHHHH
Q 011777          359 AGGLAVLRVID-K--ERRQAHCADVGSHLLGRLRTL  391 (477)
Q Consensus       359 aaa~a~l~~l~-~--~~~~~~~~~~~~~l~~~L~~l  391 (477)
                      +..-.+.+.++ .  +++.++..+..+.+|++|+++
T Consensus       282 ASlD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~~  317 (417)
T PF01276_consen  282 ASLDVARAQMEEEEGRELLEEAIELAEEFRKKINRL  317 (417)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence            66666666662 2  457888888899999998663

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=98.75  E-value=5.4e-06  Score=79.05  Aligned_cols=354  Identities=19%  Similarity=0.205  Sum_probs=186.5

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAML  173 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~  173 (477)
                      .+..|||+..-.++..+   ...-..||..    +....  ..+.....|++...+.++  .+.++.+.-|--|=...+.
T Consensus        44 Sedv~IDLLTDSGTgam---s~~qwaamm~----GDEAY--agsrs~~~L~~avkdifG--fq~~iPthQGRgAE~Il~~  112 (471)
T COG3033          44 SEDVFIDLLTDSGTGAM---TDKQWAAMMR----GDEAY--AGSRSYYALADAVKDIFG--FQYTIPTHQGRGAENILIP  112 (471)
T ss_pred             ccceEEEeeccCCcccc---cHHHHHHHhc----cchhh--cccccHHHHHHHHHHhcC--ceeeeeccCCccHHHHHHH
Confidence            45678999876664332   2333333322    22111  123445678888888884  5778888876655544444


Q ss_pred             HHHh---ccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCC
Q 011777          174 MARL---STGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG  250 (477)
Q Consensus       174 ~ar~---~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~  250 (477)
                      ..+.   .-+..++++|++.|.-.+.+.....+........+  +........++.+.++      ++.|+++|+....+
T Consensus       113 i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~~ng~~~~n~~~~--ea~d~~~~~pFKGd~D------~~kLe~lidevG~~  184 (471)
T COG3033         113 ILIKKGEQEPGSKMVAFSNYHFDTTRGHIQINGATPRNVYVD--EAFDTEVKYPFKGNFD------LEKLERLIDEVGAD  184 (471)
T ss_pred             HHhhhccccCCccccccccceecchhHHHHhcCCcccccccc--ccccccccCCCCCccC------HHHHHHHHHHhCcc
Confidence            3332   22446788898888877776655544221111111  1111122234455555      68899999877677


Q ss_pred             CeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccC----cc--C-CCCCCcccccc----CCCcceeee
Q 011777          251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG----FG--R-TGSHYWGFETQ----GVIPDIVTM  319 (477)
Q Consensus       251 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g----fg--r-~G~~~~~~~~~----gv~pDivt~  319 (477)
                      .+..|++.-.+|..|..+-+-.-+++++++|++||+.++.|.....    |-  | .|-+-|.+..-    =-..|-.++
T Consensus       185 nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~m  264 (471)
T COG3033         185 NVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTM  264 (471)
T ss_pred             cCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhhee
Confidence            7777766655555555677888899999999999999999976321    10  0 01011111100    002455556


Q ss_pred             c-ccccCccce-EEEEeCHH----HHHhhccc----ccccCCCC----cHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 011777          320 A-KGIGNGLPL-GAVVTTPE----IANVMAQK----IQFNTFGG----NPVCSAGGLAVLRVIDKERRQAHCADVGSHLL  385 (477)
Q Consensus       320 s-K~lg~G~pi-g~v~~~~~----~~~~~~~~----~~~~t~~~----~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~  385 (477)
                      | |-=+ =.++ |++..+.+    +...++..    ....||++    ...++|++   |...-+.+++++-.+..+||.
T Consensus       265 S~KKD~-lvnmGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl~GrdmealAvG---L~e~~~~~yl~~Rv~Qv~YL~  340 (471)
T COG3033         265 SAKKDG-LVNMGGFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVG---LREGVNFDYLAHRVAQVQYLA  340 (471)
T ss_pred             eccccc-eeccccEEEecCccHHHHHHHHHhheEeeccccccCcccchhHHHHHHH---HHHhcCcHHHHHHHHHHHHHH
Confidence            5 3211 0233 56666655    44444322    11234433    33333433   333334455555556677888


Q ss_pred             HHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHH-HHHHHHHHH-HHcCceeeccC-----------C----CCC
Q 011777          386 GRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKA-ETAVLFEKL-RELGVLVGKGG-----------L----HGN  448 (477)
Q Consensus       386 ~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~-~~~~~~~~l-~~~Gv~v~~~~-----------~----~~~  448 (477)
                      ++|.+.  .-|++..+-  |.-+.++-..- .+.-|... -++.+.-+| ++-||-...-|           .    .-+
T Consensus       341 ~~l~~~--GVpi~~paG--GHavfvda~~~-lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~e  415 (471)
T COG3033         341 DGLEEA--GVPIVQPAG--GHAVFVDAGKF-LPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAE  415 (471)
T ss_pred             HHHHhc--CCeeEecCC--CceEEeehhhh-cCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchh
Confidence            888775  223333333  33333332110 11112111 123333333 44465432211           0    115


Q ss_pred             EEEEeCCCC-CcHHHHHHHHHHHHHHHh
Q 011777          449 VFRIKPPMC-FTKDDADFLVDALDYSMS  475 (477)
Q Consensus       449 ~iRi~p~~~-~t~e~i~~~l~~l~~~l~  475 (477)
                      .+|+..|-. -|.+++|..++.++++.+
T Consensus       416 lvRltipRrtYt~~HmD~V~~a~~~l~e  443 (471)
T COG3033         416 LVRLTIPRRTYTQTHMDFVIEAFKALKE  443 (471)
T ss_pred             eeeEeccccccchhHHHHHHHHHHHHHh
Confidence            789876654 588999999999988764

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=98.64  E-value=4.2e-05  Score=74.97  Aligned_cols=284  Identities=17%  Similarity=0.168  Sum_probs=158.7

Q ss_pred             HHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccC-CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeee
Q 011777          141 ADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTG-NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHV  219 (477)
Q Consensus       141 ~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~-~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (477)
                      -++...++++++-+..+.-....+|.+-|+++..-|...+ ++++++ ...-|-.+..++.....        ..|+..+
T Consensus       123 fefQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V-~~~vhpqt~~Vl~Tra~--------~~g~~i~  193 (450)
T COG0403         123 FEFQTLVADLTGLDVANASMLDEATAAAEAMLMAKRVTKKKRNKFLV-PKDVHPQTLDVLRTRAE--------GLGIEIE  193 (450)
T ss_pred             HHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHhhcCcCceEEe-cCCCCHHHHHHHHhhcc--------cCceEEE
Confidence            4566667777755444555666777777766654444332 455554 55556555554443221        1244444


Q ss_pred             cCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEE--cCcccCc
Q 011777          220 VNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA--DEVQTGF  297 (477)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~--DEv~~gf  297 (477)
                      ..+..           ..+++++. .   ..++++++++-.+..|+....    +++|.+.++++|+++|+  |=+--++
T Consensus       194 ~~~~~-----------d~~~l~~~-~---~~~~~gv~vQyP~~~G~~~~d----~~~l~~~~h~~~al~~v~aDplaL~L  254 (450)
T COG0403         194 VVDAD-----------DLDDLESA-D---DGDVFGVLVQYPNTFGIVEED----LRALIEAAHSAGALVIVAADPLALGL  254 (450)
T ss_pred             Eeccc-----------hhhhhhhc-c---ccCeEEEEEecCCCCCccchh----HHHHHHHHhhcCCEEEEEechhHhhc
Confidence            32211           03555554 3   358899999977654433332    89999999999998884  4333222


Q ss_pred             cC-CCCCCccccccCCCcceee-----eccccc-CccceEEEEeCHHHHHhhccc-------------------------
Q 011777          298 GR-TGSHYWGFETQGVIPDIVT-----MAKGIG-NGLPLGAVVTTPEIANVMAQK-------------------------  345 (477)
Q Consensus       298 gr-~G~~~~~~~~~gv~pDivt-----~sK~lg-~G~pig~v~~~~~~~~~~~~~-------------------------  345 (477)
                      -. .|         ..-.||++     |+=.++ ||.-.|++.++++++..+..+                         
T Consensus       255 L~pPG---------e~GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHI  325 (450)
T COG0403         255 LKPPG---------EFGADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHI  325 (450)
T ss_pred             cCCcc---------ccCCceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHH
Confidence            11 11         12346664     666666 577889999999987766432                         


Q ss_pred             ---ccccCCCCcHHHHHHHHHHH-Hhhchh---hHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCC
Q 011777          346 ---IQFNTFGGNPVCSAGGLAVL-RVIDKE---RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKE  418 (477)
Q Consensus       346 ---~~~~t~~~~~~~~aaa~a~l-~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~  418 (477)
                         ...+..+.|...+|.+.+.. -.+..+   ++-++..++..++.++|++....+    .+.....|--+.+.-    
T Consensus       326 RReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~----~~~~~~fFdt~~v~~----  397 (450)
T COG0403         326 RREKATSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGV----ELVFDHFFDTFTVRV----  397 (450)
T ss_pred             hhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCce----EeccccceeeEEEec----
Confidence               11233344432222222222 122233   344566667777877777652111    111122222222211    


Q ss_pred             CCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          419 KTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       419 ~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                        +. .....+..+....|+-++...  ...+-++..=..|+++|+.+++.+....
T Consensus       398 --~~-~~~~~l~~~~~~~G~~L~~~~--~~~~~ia~tEt~t~~~i~~l~~~~~~~~  448 (450)
T COG0403         398 --PE-EVAEALLAAAIAGGINLRRVD--ADTVLIALTETTTKEDIDALVAAFGGVN  448 (450)
T ss_pred             --ch-hHHHHHHHHHHhcCCceeeec--CCceEEEeecccCHHHHHHHHHHHhhhc
Confidence              11 235566777777888777543  3355677677789999999999987654

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=98.63  E-value=2.1e-05  Score=86.13  Aligned_cols=277  Identities=14%  Similarity=0.118  Sum_probs=154.0

Q ss_pred             HHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccC-CceEEEEccCccCCcccccccccCCCCCCCCCCCCeee
Q 011777          140 IADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTG-NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHH  218 (477)
Q Consensus       140 ~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~-~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~  218 (477)
                      .-++...++++++-+..+.-+..++|.+-|++++..+...+ +++|++.+ +-|..+...+....        ...|+..
T Consensus       111 l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~-~~hP~~~~v~~t~a--------~~~g~~v  181 (939)
T TIGR00461       111 LLNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVAK-DLHPQTKSVLHTRA--------KPFGIEV  181 (939)
T ss_pred             HHHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEECC-CCCcchHHHHHHHH--------HhcCcEE
Confidence            45778888888865555667778888888855554333222 35666654 44433332222111        1124433


Q ss_pred             ecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCcc
Q 011777          219 VVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG  298 (477)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfg  298 (477)
                      +..+              .++|++.+      +++++++... +..|.+..    +++|.++++++|.++|++--...++
T Consensus       182 ~~~~--------------~~~l~~~~------~~~~v~~q~P-n~~G~ied----~~~i~~~~h~~gal~~~~ad~~al~  236 (939)
T TIGR00461       182 IVVD--------------CSDIKKAV------DVFGCLLQYP-ATDGSILD----YKQLIDALHSHKSLVSVAADLMALT  236 (939)
T ss_pred             EEEc--------------HHHHhhcC------CEEEEEEECC-CCCeEEec----HHHHHHHHHHcCCEEEEEechHHhC
Confidence            3210              24444332      4677766433 45566654    8999999999999999975443322


Q ss_pred             CCCCCCccccccCCCcceee-eccccc-----CccceEEEEeCHHHHHhhccccc-------------------------
Q 011777          299 RTGSHYWGFETQGVIPDIVT-MAKGIG-----NGLPLGAVVTTPEIANVMAQKIQ-------------------------  347 (477)
Q Consensus       299 r~G~~~~~~~~~gv~pDivt-~sK~lg-----~G~pig~v~~~~~~~~~~~~~~~-------------------------  347 (477)
                      ..- .+   .  +.-.||++ .+|.||     ||.-.|++.+++++...+....-                         
T Consensus       237 ll~-~P---g--e~GaDi~vg~~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrR  310 (939)
T TIGR00461       237 LLT-PP---G--HYGADIVLGSSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRR  310 (939)
T ss_pred             CcC-CH---H--HcCCcEEeeCCCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccc
Confidence            110 00   1  12346663 335554     25568899999988877643210                         


Q ss_pred             ---ccCCCCcHHHHH-HHHHHHHhhchhhH---HHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCC
Q 011777          348 ---FNTFGGNPVCSA-GGLAVLRVIDKERR---QAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKT  420 (477)
Q Consensus       348 ---~~t~~~~~~~~a-aa~a~l~~l~~~~~---~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~  420 (477)
                         .+.++.+...++ .+...+..+..+.+   -+++..+..++.++|.+.  .+..+..    ..|--+.+.-+.    
T Consensus       311 ekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~--G~~~~~~----~fF~~~~v~~~~----  380 (939)
T TIGR00461       311 DKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLEND--PHELINK----TWFDTLTVKVGN----  380 (939)
T ss_pred             cccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC--CCcccCC----CccceEEEEeCC----
Confidence               011112222222 12222343444433   455566667777777663  2222221    112122221110    


Q ss_pred             ccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHH
Q 011777          421 PAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALD  471 (477)
Q Consensus       421 ~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~  471 (477)
                         ....++.+.+.++||.+....  ++.+++++.-.+|++||+.+++.|.
T Consensus       381 ---~~~~~i~~~~~~~gi~l~~~~--~~~i~~s~~E~~t~~di~~l~~~~~  426 (939)
T TIGR00461       381 ---GISSELLKAAEEFNINLRAVD--TTTVGIALDETTTKADVENLLKVFD  426 (939)
T ss_pred             ---CCHHHHHHHHHHCCCeeeecC--CCEEEEEeecCCCHHHHHHHHHHhc
Confidence               125678899999999987642  5689999999999999999999984

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK13578 ornithine decarboxylase; Provisional

Probab=98.54  E-value=1.3e-05  Score=85.59  Aligned_cols=310  Identities=13%  Similarity=0.013  Sum_probs=152.9

Q ss_pred             HHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCccc-cccccc-CCCCCCCCC-CCC
Q 011777          139 AIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSG-TIGLTA-LNTWKYPIP-QGE  215 (477)
Q Consensus       139 ~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~-~~~~~~-~~~~~~~~~-~~~  215 (477)
                      ...+..+..++.++.+ +..|.+||.|.+|.+++..+.  ++++.|++ +...|-+... ++.+++ .+.|-.+.. ..|
T Consensus       175 ~i~eAq~~AA~~fgAd-~tyFlvNGTS~gn~a~i~a~~--~~Gd~VLv-dRN~HKSv~hgaLiLsGa~PVYl~P~~n~~G  250 (720)
T PRK13578        175 AAKDAQKHAAKVFNAD-KTYFVLNGTSASNKVVTNALL--TPGDLVLF-DRNNHKSNHHGALIQAGATPVYLETARNPFG  250 (720)
T ss_pred             HHHHHHHHHHHHhCCC-ceEEEeCChhHHHHHHHHHhc--CCCCEEEe-ecccHHHHHHHHHHHcCCeEEEeeccccccC
Confidence            3556666666667653 467777888888887776543  24555555 5555555443 344443 233322111 011


Q ss_pred             eeeecCCCCcCCCCCCCHHH-HHHHHHHHHhccCCC------C-eeEEEecccCCCCCeeeCCchhHHHHHHH-HHHhCc
Q 011777          216 IHHVVNPDPYHGSFGSDAAR-YAQDLQDHIDFGTSG------K-VAGFIAETIQGVGGAVELAPGYLKLVYDI-VRKAGG  286 (477)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~-~~~~le~~i~~~~~~------~-~a~vi~epi~~~~G~~~~~~~~l~~l~~l-~~~~gi  286 (477)
                      +..         +.  +... ..+.+++.|+...++      . .++||..|..  .|++..    +++|.++ |++++ 
T Consensus       251 i~g---------~I--~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY--dG~~yd----i~~I~~~~~h~~~-  312 (720)
T PRK13578        251 FIG---------GI--DAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY--DGTIYN----ARQVVDKIGHLCD-  312 (720)
T ss_pred             CcC---------CC--ChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC--cceeec----HHHHHHHhhccCC-
Confidence            111         11  1100 025577777643111      2 3455555532  355555    8899988 78888 


Q ss_pred             EEEEcCcccCccCCCCCC--ccccccCCCcc----eeeec--ccccCccce-EEEEeCHHHH---------Hhhccc-cc
Q 011777          287 VCIADEVQTGFGRTGSHY--WGFETQGVIPD----IVTMA--KGIGNGLPL-GAVVTTPEIA---------NVMAQK-IQ  347 (477)
Q Consensus       287 llI~DEv~~gfgr~G~~~--~~~~~~gv~pD----ivt~s--K~lg~G~pi-g~v~~~~~~~---------~~~~~~-~~  347 (477)
                      .|++||++.+.-.-...+  +.-......+|    ++|=|  |.+++ +-- +++-.+...+         +.+... ..
T Consensus       313 ~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~a-lTQaS~LHvk~~~i~g~~~~v~~~r~~~al~m  391 (720)
T PRK13578        313 YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAG-FSQTSQIHKKDNHIKGQARYCPHKRLNNAFML  391 (720)
T ss_pred             cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchh-hhhHhhhhcCCcccccccccCCHHHHHHHHHH
Confidence            999999987542211010  11011233456    66544  77764 222 3332322111         112211 11


Q ss_pred             ccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCce--eee--------------------
Q 011777          348 FNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIG--DVR--------------------  402 (477)
Q Consensus       348 ~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~--~v~--------------------  402 (477)
                      ..|-+.+.+-+|..-.+-..++.   +.+.+...+....+|+.|.+....+....  .+.                    
T Consensus       392 ~qSTSPsY~LmASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~w~  471 (720)
T PRK13578        392 HASTSPFYPLFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFS  471 (720)
T ss_pred             HcCCChHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccccccccCchhhhcccccccc
Confidence            12334444444433333343432   45677777788888887733221111110  000                    


Q ss_pred             --------ccc-----e-e---EEEEEeeCCCC-----CCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcH
Q 011777          403 --------GRG-----L-M---VGMELVTDRKE-----KTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTK  460 (477)
Q Consensus       403 --------g~g-----~-~---~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~  460 (477)
                              |..     . +   .-+.+.....+     ....+.-+..+.+.|.++||.+...+  .+.+-+.++...|+
T Consensus       472 ~~p~~~whgf~~~~~~~~~lDP~KltI~t~G~~~~~G~~~~~Gipg~~l~~~L~e~gI~~E~~d--~~~vL~l~s~g~t~  549 (720)
T PRK13578        472 FEPGEKWHGFEGYAEDQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANYLRENGIVPEKCD--LNSILFLLTPAEDM  549 (720)
T ss_pred             cccCccccccccccccccccCCceEEEEcCCcCcccccccccCccHHHHHHHHHHcCCEEEecC--CCeEEEEeCCCCCH
Confidence                    000     0 0   00001000000     00011124568888888899998765  44555666788999


Q ss_pred             HHHHHHHHHHHHH
Q 011777          461 DDADFLVDALDYS  473 (477)
Q Consensus       461 e~i~~~l~~l~~~  473 (477)
                      ++++.++++|.++
T Consensus       550 ~~~~~Lv~aL~~f  562 (720)
T PRK13578        550 AKLQQLVAMLARF  562 (720)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998765

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=98.52  E-value=3e-05  Score=77.90  Aligned_cols=275  Identities=18%  Similarity=0.176  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCc--eEEEEccCccCCcccccccccCCCCCCCCCCCCe
Q 011777          139 AIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNL--GMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEI  216 (477)
Q Consensus       139 ~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~--~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~  216 (477)
                      ..-++...++++++-+...+-+-.+++.+-|+++...|. ++++  +|++. .+-|+.+..++......        .++
T Consensus       111 ~lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~-~~~~~~~vlv~-~~~hP~~~~v~~t~a~~--------~g~  180 (429)
T PF02347_consen  111 ALFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRA-TKRKRNKVLVP-ESLHPQTRAVLRTYAAP--------LGI  180 (429)
T ss_dssp             HHHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHH-HTT---EEEEE-TTS-CHHHHHHHHHCCH--------CCE
T ss_pred             HHHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHh-cccCCcEEEEc-CCcChhhHHHHHHhhhh--------CCe
Confidence            346888889998843322234555677666755544444 4433  55554 55666554443322211        244


Q ss_pred             eeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCc---
Q 011777          217 HHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEV---  293 (477)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv---  293 (477)
                      ..+..+..... .        .+         .+++++|+++..+. -|.+..    +++|.++++++|+++|+ -+   
T Consensus       181 ~iv~~~~~~~~-~--------~d---------~~~~a~v~vq~Pn~-~G~~ed----~~~i~~~~h~~gal~~~-~ad~~  236 (429)
T PF02347_consen  181 EIVEVPLDEDG-T--------TD---------DDDTAAVMVQNPNT-FGVFED----IKEIADIAHAAGALVIV-GADPN  236 (429)
T ss_dssp             EEEEE-BBTTC-S--------B----------STTEEEEEEESS-T-TSB--T----HHHHHHHHHHTT-EEEE-CGGCC
T ss_pred             EEEEecccccC-C--------cc---------ccCeEEEEeecCCC-CceEee----HHHHHHHHHHcCCEEEE-ecCHH
Confidence            44443321100 0        01         36899999887654 454544    89999999999999986 22   


Q ss_pred             -ccCccCCCCCCccccccCCCcceee-eccccc-----CccceEEEEeCHHHHHhhccc---------------------
Q 011777          294 -QTGFGRTGSHYWGFETQGVIPDIVT-MAKGIG-----NGLPLGAVVTTPEIANVMAQK---------------------  345 (477)
Q Consensus       294 -~~gfgr~G~~~~~~~~~gv~pDivt-~sK~lg-----~G~pig~v~~~~~~~~~~~~~---------------------  345 (477)
                       ..++-+.|       .+  -.||++ .+|.||     ||.-.|++.++++++..+..+                     
T Consensus       237 aL~~l~~Pg-------e~--GADI~vg~~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtR  307 (429)
T PF02347_consen  237 ALGGLKSPG-------EY--GADIVVGEHQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTR  307 (429)
T ss_dssp             GCCTC--GG-------GG--T-SEEEECCTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGG
T ss_pred             HHhCcCChh-------hc--CccEEeeCCCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccc
Confidence             11111111       12  347764 346665     357789999999988766432                     


Q ss_pred             -------ccccCCCCcHHHHH-HHHHHHHhhchhh---HHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEee
Q 011777          346 -------IQFNTFGGNPVCSA-GGLAVLRVIDKER---RQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVT  414 (477)
Q Consensus       346 -------~~~~t~~~~~~~~a-aa~a~l~~l~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~  414 (477)
                             ...+.++.|...++ ++...+..+..+.   .-++...+..|+.++|.++ -..+    ..+. .|.-+.+..
T Consensus       308 EQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~-~~~~----~~~~-~f~e~v~~~  381 (429)
T PF02347_consen  308 EQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKI-YGLP----FDNP-FFFEFVVVF  381 (429)
T ss_dssp             TCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TBEC----SSSS-SBSSEEEEE
T ss_pred             cccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh-cCcc----cCCC-Cceeeeeec
Confidence                   11233444533333 3333444444443   4566666777888877664 1111    1111 122111111


Q ss_pred             CCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHH
Q 011777          415 DRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDAL  470 (477)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l  470 (477)
                      .     .. ....++.+.+...|+.....  ..+.+-+++.=..|++|||.++++|
T Consensus       382 ~-----~~-~~~~~l~~~~~~~gl~~~~~--~~~~~li~~TE~~t~edid~lv~~f  429 (429)
T PF02347_consen  382 S-----KD-KEVEELLKRGIEGGLNLRYP--DDGALLICVTETRTKEDIDRLVEAF  429 (429)
T ss_dssp             S-----S--HHHHHHHHTT----EEEGGG---SSEEEEE--TT--HHHHHHHHH--
T ss_pred             C-----Cc-HHHHHHHHHHHhcCCCcccc--CCCeEEEEccCCCCHHHHHHHHhcC
Confidence            1     11 23344666666667444322  2347889999999999999999875

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=98.50  E-value=1.2e-05  Score=79.02  Aligned_cols=223  Identities=15%  Similarity=0.068  Sum_probs=125.4

Q ss_pred             CHHHHHHHHHHHhhccccc-c---ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEcc
Q 011777          114 HPDVLNAIFEQSKLLQHAT-T---IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRN  189 (477)
Q Consensus       114 ~p~v~~Av~~~l~~~~~~~-~---~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~  189 (477)
                      +|++++++.+.+.....-. .   ...-+-...+++.++....  .+.+.++|.-+-|+...+-..-.  ++..|+..-+
T Consensus        40 ~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~~~~~--aea~~ivnnn~aAVll~~~al~~--~~EvVis~g~  115 (395)
T COG1921          40 SPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLCGLTG--AEAAAIVNNNAAAVLLTLNALAE--GKEVVVSRGE  115 (395)
T ss_pred             CHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHhcccc--hhheeeECCcHHHHHHHHhhhcc--CCeEEEEccc
Confidence            7899999988877532110 0   0111112355555555542  36788888888888876652211  3344443211


Q ss_pred             ---CccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCe
Q 011777          190 ---AYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGA  266 (477)
Q Consensus       190 ---~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~  266 (477)
                         ++|-.....+..            .|...+..-+.-+        ....+++.+|...  .....-+..+..+-.+.
T Consensus       116 lV~gg~~~v~d~~~~------------aG~~l~EvG~tn~--------t~~~d~~~AIne~--ta~llkV~s~~~~f~~~  173 (395)
T COG1921         116 LVEGGAFRVPDIIRL------------AGAKLVEVGTTNR--------THLKDYELAINEN--TALLLKVHSSNYGFTGM  173 (395)
T ss_pred             cccCCCCChhHHHHH------------cCCEEEEecccCc--------CCHHHHHHHhccC--CeeEEEEeecccccccc
Confidence               233332222222            2333332211111        1257888888721  11222233443344454


Q ss_pred             eeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCHHHHHhhcc
Q 011777          267 VELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPEIANVMAQ  344 (477)
Q Consensus       267 ~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~~~~~~~~  344 (477)
                      +.     ++++.++|++||+++|+|..-...-+ - .+---+.....+|+|+||  |-|+| ..-|.+++++++++.+..
T Consensus       174 l~-----~~~l~~ia~~~~lpvivD~aSg~~v~-~-e~~l~~~la~GaDLV~~SgdKllgG-PqaGii~GkKelI~~lq~  245 (395)
T COG1921         174 LS-----EEELVEIAHEKGLPVIVDLASGALVD-K-EPDLREALALGADLVSFSGDKLLGG-PQAGIIVGKKELIEKLQS  245 (395)
T ss_pred             cc-----HHHHHHHHHHcCCCEEEecCCccccc-c-ccchhHHHhcCCCEEEEecchhcCC-CccceEechHHHHHHHHh
Confidence            33     78899999999999999986432111 0 111113344568999998  87764 567999999999988875


Q ss_pred             cccccCCCCcHHHHHHHHHHHHhhch
Q 011777          345 KIQFNTFGGNPVCSAGGLAVLRVIDK  370 (477)
Q Consensus       345 ~~~~~t~~~~~~~~aaa~a~l~~l~~  370 (477)
                      ....-.+-......++..++|+....
T Consensus       246 ~~l~Ralrv~K~tla~l~~aLe~y~~  271 (395)
T COG1921         246 HPLKRALRVDKETLAALEAALELYLQ  271 (395)
T ss_pred             hhhhhhhhcCcHhHHHHHHHHHHHcC
Confidence            43333344556777777788876654

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=98.49  E-value=4.1e-05  Score=81.70  Aligned_cols=308  Identities=13%  Similarity=0.120  Sum_probs=157.5

Q ss_pred             HHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccC-CCCCCCCC-CCCe
Q 011777          139 AIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTAL-NTWKYPIP-QGEI  216 (477)
Q Consensus       139 ~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~-~~~~~~~~-~~~~  216 (477)
                      ...+..+..++.++.+ ...+.+||.|.+|.+++..+.  +++++|+ ++...|-+...++.+++. +.|-.+.. ..|+
T Consensus       196 ~i~eAe~~aA~~fgAd-~tyfvvNGTS~~n~av~~a~~--~~Gd~VL-vdRN~HKSv~~aLilsga~PVYl~P~~n~~Gi  271 (713)
T PRK15399        196 PHLEAEEYIARTFGAE-QSYIVTNGTSTSNKIVGMYAA--PAGSTLL-IDRNCHKSLAHLLMMSDVVPIWLKPTRNALGI  271 (713)
T ss_pred             HHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHhc--CCCCEEE-eecccHHHHHHHHHHcCCeeEEecccccccCC
Confidence            3556666666777653 456677777888887776543  3455555 455555554445555443 33322111 1111


Q ss_pred             eeecCCCCcCCCCCCCHHHHHHHHHHHHhccCC--CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEE-EEcCc
Q 011777          217 HHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS--GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVC-IADEV  293 (477)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~--~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill-I~DEv  293 (477)
                      ..-..+.    .|.      .+.+++.|+....  ...++||..|..  .|++..    +++|.++|   |+.+ ++||+
T Consensus       272 ~g~I~~~----~~~------~e~I~~~i~~~p~~~~p~~vvit~pTY--dGi~yd----~~~I~~~~---g~~~ilvDEA  332 (713)
T PRK15399        272 LGGIPRR----EFT------RDSIEEKVAATTQAQWPVHAVITNSTY--DGLLYN----TDWIKQTL---DVPSIHFDSA  332 (713)
T ss_pred             cCCCChh----hcc------HHHHHHHHHhCCCcCCceEEEEECCCC--CceeeC----HHHHHHHh---CCCEEEEecc
Confidence            1100000    011      2677888864321  114677776632  355555    77788877   6766 59999


Q ss_pred             ccCccCCCCCC---ccccccCCCccee---e--ecccccCccce-EEEEeCHHHH-Hhhccc-ccccCCCCcHHHHHHHH
Q 011777          294 QTGFGRTGSHY---WGFETQGVIPDIV---T--MAKGIGNGLPL-GAVVTTPEIA-NVMAQK-IQFNTFGGNPVCSAGGL  362 (477)
Q Consensus       294 ~~gfgr~G~~~---~~~~~~gv~pDiv---t--~sK~lg~G~pi-g~v~~~~~~~-~~~~~~-~~~~t~~~~~~~~aaa~  362 (477)
                      +.+.-.-...+   .++. .+-.+|.+   +  .-|.+++ +-- +++-.+..+- +.+... ....|-+.+.+-+|..-
T Consensus       333 hgah~~F~p~~~~~sam~-~~~~aD~~i~~tQStHKtL~a-lTQaS~iHvk~~vd~~~~n~a~~m~~STSPsY~LmASLD  410 (713)
T PRK15399        333 WVPYTHFHPIYQGKSGMS-GERVPGKVIFETQSTHKMLAA-FSQASLIHIKGEYDEETFNEAFMMHTSTSPSYPIVASVE  410 (713)
T ss_pred             chhhhhcCcccCCcChhh-CCCCCCeeeeeeeehhccccc-cchheeeeecCCCCHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            87542211011   1111 11145766   3  3388764 222 3443332211 112111 12234455555555555


Q ss_pred             HHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCc-eeeec------ccee--------E----------E-----
Q 011777          363 AVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDII-GDVRG------RGLM--------V----------G-----  409 (477)
Q Consensus       363 a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~-~~v~g------~g~~--------~----------~-----  409 (477)
                      .+.+.++.   +.+.+...+....+|+.|.++....... ..+.+      ...+        .          .     
T Consensus       411 ~a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP~K  490 (713)
T PRK15399        411 TAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDPVK  490 (713)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCcccccccccccccccCCCce
Confidence            55555542   4577788888888888887763211000 00000      0000        0          0     


Q ss_pred             EEEeeCC----CCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          410 MELVTDR----KEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       410 i~~~~~~----~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      +.+....    ...+..+..+..+.+.|.++||.+...+  .+.+-+.++...|+++++.+++.|.+.
T Consensus       491 ltI~t~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~d--~~~vL~l~s~g~t~~~~~~L~~aL~~f  556 (713)
T PRK15399        491 VTILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTG--PYNLLFLFSIGIDKTKAMGLLRGLTEF  556 (713)
T ss_pred             EEEEecCcccccccccCCCCHHHHHHHHHHcCCEEEecC--CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            0010000    0000112335567888999999998765  445667778889999999999988765

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=98.48  E-value=1.2e-05  Score=78.26  Aligned_cols=311  Identities=19%  Similarity=0.186  Sum_probs=157.6

Q ss_pred             HHHHHHHHhhCCCCCC-EEEEeCChHHHHHHHHHHHHhcc--C---------CceEEEEccCccCCcccccccccCCCCC
Q 011777          141 ADFAEALASKMPGNLK-VVYFVNSGTEANELAMLMARLST--G---------NLGMIALRNAYHGGSSGTIGLTALNTWK  208 (477)
Q Consensus       141 ~~l~~~La~~~~~~~~-~v~~~~sGseA~~~Al~~ar~~~--~---------~~~ii~~~~~yhG~~~~~~~~~~~~~~~  208 (477)
                      .++-.++.+..++..+ .-+|++||+-+|..|+..||...  +         +..|+..+.--|=+..-+....+     
T Consensus       144 ~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg-----  218 (510)
T KOG0629|consen  144 EEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLG-----  218 (510)
T ss_pred             HHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhc-----
Confidence            3455555665554432 56799999999999999998621  1         11222222222222111111111     


Q ss_pred             CCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC-CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcE
Q 011777          209 YPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT-SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGV  287 (477)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~-~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gil  287 (477)
                        +....+..  ++...++...      .+|||+.|...+ ++.+-++ ++..-|++  +.-.-+.|..|.++|++|+.+
T Consensus       219 --~gtd~c~~--v~t~e~Gkm~------~~dLe~kile~k~kg~~Pf~-vnaTaGTT--V~GAFDdL~~iadiC~k~~lW  285 (510)
T KOG0629|consen  219 --LGTDHCIK--VKTDERGKMI------PDDLEKKILEAKAKGGVPFF-VNATAGTT--VLGAFDDLNGIADICEKHKLW  285 (510)
T ss_pred             --cCCceeEE--ecccccCccc------hHHHHHHHHHHHhcCCCCeE-EEecCCce--eeeccCcHHHHHHHHHhcCEE
Confidence              00011222  2223333333      588988876332 2223233 33222332  222233399999999999999


Q ss_pred             EEEcCcccCccCCCCCCccc----cccCCC-cceeeec--ccccCccceEEEEeCHH-HHHhhcccc----------ccc
Q 011777          288 CIADEVQTGFGRTGSHYWGF----ETQGVI-PDIVTMA--KGIGNGLPLGAVVTTPE-IANVMAQKI----------QFN  349 (477)
Q Consensus       288 lI~DEv~~gfgr~G~~~~~~----~~~gv~-pDivt~s--K~lg~G~pig~v~~~~~-~~~~~~~~~----------~~~  349 (477)
                      +++|.+..|    | -+.+.    ...|+. .|.++.+  |-+|..++.++.+.+.+ +.+...+..          +-.
T Consensus       286 mHvDAAwGG----g-lLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~Ydv  360 (510)
T KOG0629|consen  286 MHVDAAWGG----G-LLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDV  360 (510)
T ss_pred             EEeeccccc----c-cccChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhhccCceeec
Confidence            999998765    1 11111    223453 4666654  88888899999888876 333332211          001


Q ss_pred             CC-CCcHHHHHH-------HHHHHHhh---chhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCC--
Q 011777          350 TF-GGNPVCSAG-------GLAVLRVI---DKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDR--  416 (477)
Q Consensus       350 t~-~~~~~~~aa-------a~a~l~~l---~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~--  416 (477)
                      .| .++-..+..       ..-.++.-   .-+..++++-++.+||.++|++... +..+....++-.-+.+-++...  
T Consensus       361 S~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~-~~~l~~~~pe~~nv~fw~vp~~lR  439 (510)
T KOG0629|consen  361 SYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREG-FEMLFELEPEHVNVCFWYVPPSLR  439 (510)
T ss_pred             ccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhccc-ceehhcCCCceEEEeeccCchHhc
Confidence            11 111111111       11111110   1145677888889999999887531 1112121111111111111110  


Q ss_pred             -CCCCccH-----HHHHHHHHHHHHcCcee---eccCCCCCEEEE--eCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          417 -KEKTPAK-----AETAVLFEKLRELGVLV---GKGGLHGNVFRI--KPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       417 -~~~~~~~-----~~~~~~~~~l~~~Gv~v---~~~~~~~~~iRi--~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                       ....+..     ..+..+...|.++|-..   .|.+...|++|+  ++| +.+.+|+|.+++.|++.=++
T Consensus       440 ~~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~-a~~~ad~dflldEIerlgq~  509 (510)
T KOG0629|consen  440 GWQENPERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNP-ALTEADLDFLLDEIERLGQD  509 (510)
T ss_pred             cCcccchhhhHHHhhCcHHHHHHHhccceeeEecccccccchhheecccc-hhhhhhHHHHHHHHHHhccC
Confidence             0111111     11235667888888543   455556787775  333 67899999999999876443

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=98.46  E-value=3.6e-07  Score=88.71  Aligned_cols=224  Identities=19%  Similarity=0.167  Sum_probs=54.2

Q ss_pred             ccCCCC--CHHHHHHHHHHHhhccccccccC-----C-hHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhcc
Q 011777          108 VSCGHC--HPDVLNAIFEQSKLLQHATTIYL-----H-HAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLST  179 (477)
Q Consensus       108 ~~lGh~--~p~v~~Av~~~l~~~~~~~~~~~-----~-~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~  179 (477)
                      .|||-+  ++++.+++.+.+..+..  -.|.     . .-...+.+.|+..++  .+..+++|+.+.|+.+++....  .
T Consensus        11 TnLGRs~l~~~a~~a~~~~a~~Y~n--LE~dl~~G~Rg~R~~~v~~ll~~ltg--AeaA~VvNnnaAAv~L~l~~la--~   84 (367)
T PF03841_consen   11 TNLGRSPLSEEAIEAVAEVASGYSN--LEYDLETGKRGSRYAHVEELLCELTG--AEAALVVNNNAAAVLLALNTLA--K   84 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccc--cccccccccccccccccccccccccc--cccccccccccccccccccccc--c
Confidence            456653  57888888776654221  1110     0 002344555666663  4678899999988888776332  2


Q ss_pred             CCceEEEEccC---ccCC--cccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeE
Q 011777          180 GNLGMIALRNA---YHGG--SSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAG  254 (477)
Q Consensus       180 ~~~~ii~~~~~---yhG~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~  254 (477)
                      ++ .||+-.|-   +-|.  ....+..            .|...+.+        +....-.+.|++++|.    +++++
T Consensus        85 ~~-EvIvsRGelVeiGgsFRip~vm~~------------sGa~lvEV--------GttN~t~~~Dye~AI~----e~Ta~  139 (367)
T PF03841_consen   85 GK-EVIVSRGELVEIGGSFRIPDVMRQ------------SGARLVEV--------GTTNRTHLSDYEKAIT----ENTAA  139 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cc-cccccccccccccccccccccccc------------cccccccc--------cccccccccccccccc----ccccc
Confidence            44 34443321   1110  1111111            22222211        1111122577888886    45555


Q ss_pred             E-EecccC----CCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccC------ccCCCCCCccccccCCCcceeeec--c
Q 011777          255 F-IAETIQ----GVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG------FGRTGSHYWGFETQGVIPDIVTMA--K  321 (477)
Q Consensus       255 v-i~epi~----~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g------fgr~G~~~~~~~~~gv~pDivt~s--K  321 (477)
                      + .+-+.|    |-.+. ++    ++++.+++++|++++|.|---..      +|..+ ...-.+....-.|++|||  |
T Consensus       140 ll~Vh~Sn~~i~GFt~~-~~----~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~-Ep~v~~~~~~GaDlV~fSGdK  213 (367)
T PF03841_consen  140 LLKVHTSNFRIQGFTGE-VS----LEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPD-EPTVQEYLAAGADLVTFSGDK  213 (367)
T ss_dssp             --------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT-----------CCCCT-SEEEEETTS
T ss_pred             ccccccccccccccccc-cc----HHHHHHHHhhcCCcEEEECCCCCCcCcccccCcc-ccHHHHHhhcCCCEEEEECCC
Confidence            4 454322    22222 22    89999999999999999975421      12222 122223344568999998  8


Q ss_pred             cccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc
Q 011777          322 GIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID  369 (477)
Q Consensus       322 ~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~  369 (477)
                      -+|| ...|.+++++++++.++.-...-.+-..-+..++..++|+...
T Consensus       214 lLGG-PQaGiI~Gkk~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~  260 (367)
T PF03841_consen  214 LLGG-PQAGIIVGKKELIEKLKKHPLGRALRVDKLTLAALEATLRLYL  260 (367)
T ss_dssp             SSSS--S-EEEEEEHHHHHHHHHHHHTTT-B--HHHHHHHHHHHHH--
T ss_pred             cCCC-CCeEEEEeCHHHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHH
Confidence            8876 3469999999999988753333344556777888888887643

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=98.45  E-value=6.6e-05  Score=79.35  Aligned_cols=151  Identities=16%  Similarity=0.181  Sum_probs=86.3

Q ss_pred             HHHHHHHHhcc--CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHH---HHhCc--EEEEcCcccCccCC---C-C-CC
Q 011777          237 AQDLQDHIDFG--TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIV---RKAGG--VCIADEVQTGFGRT---G-S-HY  304 (477)
Q Consensus       237 ~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~---~~~gi--llI~DEv~~gfgr~---G-~-~~  304 (477)
                      .++|++.|+..  ....+.+|+..--..+.|.+-|    +++|.++|   +++|+  ++++|.++.|+.+.   . . .+
T Consensus       262 ~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDp----l~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~  337 (608)
T TIGR03811       262 INELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDG----IDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNF  337 (608)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCC----HHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccc
Confidence            47777777532  2234455555544444576766    88888888   77898  69999999987421   0 0 00


Q ss_pred             ccc--------------------------cccCC-Ccceeeec--ccccCccceEEEEeCHH-HHHhhccc---c--cc-
Q 011777          305 WGF--------------------------ETQGV-IPDIVTMA--KGIGNGLPLGAVVTTPE-IANVMAQK---I--QF-  348 (477)
Q Consensus       305 ~~~--------------------------~~~gv-~pDivt~s--K~lg~G~pig~v~~~~~-~~~~~~~~---~--~~-  348 (477)
                      ..+                          ...++ ..|-+|+.  |.+.-.++.|+++.+.. +.+.+...   .  .. 
T Consensus       338 ~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~  417 (608)
T TIGR03811       338 IPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISYFATYVFEKGA  417 (608)
T ss_pred             cccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHHHHHHHhcCcchhccccc
Confidence            000                          01123 35666654  88777788998888754 43433211   0  00 


Q ss_pred             --------cCCCCc--HHHHHHHHHHHHhh--ch---hhHHHHHHHHHHHHHHHHHHH
Q 011777          349 --------NTFGGN--PVCSAGGLAVLRVI--DK---ERRQAHCADVGSHLLGRLRTL  391 (477)
Q Consensus       349 --------~t~~~~--~~~~aaa~a~l~~l--~~---~~~~~~~~~~~~~l~~~L~~l  391 (477)
                              .+..+.  ....++...+++.+  ..   .+++++..+..+++.+.|++.
T Consensus       418 ~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~  475 (608)
T TIGR03811       418 DIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNL  475 (608)
T ss_pred             cCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                    112222  23345555667665  33   345666677777787777663

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=98.42  E-value=3.8e-05  Score=73.58  Aligned_cols=281  Identities=16%  Similarity=0.151  Sum_probs=146.7

Q ss_pred             ChHHHHHHHHHHhhCC---CCCCEEEEeCChHHHHHHHHHHHHhc----cCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          137 HHAIADFAEALASKMP---GNLKVVYFVNSGTEANELAMLMARLS----TGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       137 ~~~~~~l~~~La~~~~---~~~~~v~~~~sGseA~~~Al~~ar~~----~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      .+..++..++|.+..+   .+-..|+|.+|+|+-+.+|+-..-..    .+.-+|++-.|-|.-+...+--..       
T Consensus        45 s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~-------  117 (363)
T PF04864_consen   45 SPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFD-------  117 (363)
T ss_dssp             -HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT--------
T ss_pred             cHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhcc-------
Confidence            3434444444444443   12357999999999999988744221    123467776666643322211110       


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                         ...+...-....+.                  ........-=+++.|+|+.|....+          +++.-+..+|
T Consensus       118 ---s~~y~w~Gda~~~~------------------~~~~~~~~IElVTSPNNPDG~lr~~----------V~~g~~~k~I  166 (363)
T PF04864_consen  118 ---SRLYKWAGDASNFK------------------NSDNPSPYIELVTSPNNPDGQLREA----------VLNGSSGKVI  166 (363)
T ss_dssp             ---BTTEEEEEECCCGT------------------T-S-CCGEEEEEESS-TTT----------------SSTTTEEEEE
T ss_pred             ---ccCccccccHHhhc------------------cCCCCCCeEEEEeCCCCCcccccch----------hcCCCCccee
Confidence               00111110000010                  1011234556778887766643221          3456667789


Q ss_pred             EcCcccCccCCCCCCccccccCCCccee--eeccccc-CccceEEEEeCH-HHHHhhcccccccCCCCcHHHHHHHHHHH
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIG-NGLPLGAVVTTP-EIANVMAQKIQFNTFGGNPVCSAGGLAVL  365 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg-~G~pig~v~~~~-~~~~~~~~~~~~~t~~~~~~~~aaa~a~l  365 (477)
                      .|=+|---     ++.++.. ...-||+  |+||.-| +|-|+||.+.+. ++.+.+......+|.+.+-=+|.=++..|
T Consensus       167 ~D~AYYWP-----hyTpI~~-~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiL  240 (363)
T PF04864_consen  167 HDLAYYWP-----HYTPITA-PADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKIL  240 (363)
T ss_dssp             EE-TT-ST-----TTS---S--B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHH
T ss_pred             eeeeeecc-----cccccCC-CCCCceEEEEEecccCccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHH
Confidence            99887411     1222211 1223544  7899998 699999998875 57777766666788888888888787777


Q ss_pred             Hhhch----h----hHHHHHHHHHHHHHHHHHHHHHhCCC-------------cee-eeccceeEEEEEeeCCCCCCccH
Q 011777          366 RVIDK----E----RRQAHCADVGSHLLGRLRTLQERHDI-------------IGD-VRGRGLMVGMELVTDRKEKTPAK  423 (477)
Q Consensus       366 ~~l~~----~----~~~~~~~~~~~~l~~~L~~l~~~~~~-------------~~~-v~g~g~~~~i~~~~~~~~~~~~~  423 (477)
                      +.+.+    +    ++.+.-.+.-+..-++|+++..+...             ... ......+.|+.+..+.       
T Consensus       241 k~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~ee-------  313 (363)
T PF04864_consen  241 KVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREE-------  313 (363)
T ss_dssp             HHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSCG-------
T ss_pred             HHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCcc-------
Confidence            76533    1    24333333333333444444433221             111 2234667788875321       


Q ss_pred             HHHHHHHHHHHHcCceeeccCCC---CCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777          424 AETAVLFEKLRELGVLVGKGGLH---GNVFRIKPPMCFTKDDADFLVDALDY  472 (477)
Q Consensus       424 ~~~~~~~~~l~~~Gv~v~~~~~~---~~~iRi~p~~~~t~e~i~~~l~~l~~  472 (477)
                        ...+...|++.||+.+.|..+   ..++|+  ++..++++.|.++++|..
T Consensus       314 --d~DC~~~l~~~~I~tr~G~~fga~~ryVRl--Sml~~~d~Fd~l~~rL~~  361 (363)
T PF04864_consen  314 --DEDCYAVLREAKIITRSGVLFGADSRYVRL--SMLKRDDDFDQLLERLSK  361 (363)
T ss_dssp             --GSSHHHHHHCTTEEEEEGGGGTS-TTEEEE--ESSS-HHHHHHHHHHHHC
T ss_pred             --cccHHHHHHhCCcccCCCCccCCCCCeEEE--eccCCHHHHHHHHHHHHh
Confidence              124677888899999887544   478999  588999999999999875

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=98.42  E-value=0.00027  Score=68.24  Aligned_cols=198  Identities=15%  Similarity=0.094  Sum_probs=120.3

Q ss_pred             eeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--ccccC-ccc
Q 011777          252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGN-GLP  328 (477)
Q Consensus       252 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~-G~p  328 (477)
                      .+-|...++....|+..+...+.      ..  +.++|+|-.-.-|+|.    ..+.    +-|++.+|  |.+|+ |  
T Consensus       145 ~ayv~~~~NeTi~Gv~v~~~p~~------~~--~~~~v~D~SS~ilsr~----iDvs----k~dviyagaQKnlGpaG--  206 (365)
T COG1932         145 DAYVHFCWNETISGVEVPELPDI------GS--DGLLVADASSAILSRP----IDVS----KYDVIYAGAQKNLGPAG--  206 (365)
T ss_pred             ccEEEEecCCcccceEccCCCCC------CC--CceEEEecccHHhcCC----CChh----HcceEEEehhhccCccc--
Confidence            45577777666677666543321      11  2789999765434331    1111    34778776  99996 7  


Q ss_pred             eEEEEeCHHHHHhhccc------------ccccCCCCcHHHHH-HHHHHHHhhchhh----HHHHHHHHHHHHHHHHHHH
Q 011777          329 LGAVVTTPEIANVMAQK------------IQFNTFGGNPVCSA-GGLAVLRVIDKER----RQAHCADVGSHLLGRLRTL  391 (477)
Q Consensus       329 ig~v~~~~~~~~~~~~~------------~~~~t~~~~~~~~a-aa~a~l~~l~~~~----~~~~~~~~~~~l~~~L~~l  391 (477)
                      ++.++.++++.+.+...            ...++|+.+|..+. ....+++.+....    +.++-++..+.|.+.+.+-
T Consensus       207 ltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s  286 (365)
T COG1932         207 LTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKS  286 (365)
T ss_pred             eEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence            88999999998877542            24567877665443 3446677776643    4444444444454444332


Q ss_pred             HHhCCCceeeeccceeE-EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHH
Q 011777          392 QERHDIIGDVRGRGLMV-GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDAL  470 (477)
Q Consensus       392 ~~~~~~~~~v~g~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l  470 (477)
                       .-+........++.|. .+.+.        +......+..++.++|+..-.|-...+-+|++.--+++.++++.+++-+
T Consensus       287 -~fy~~~v~~~~RS~mnV~f~~~--------~~~ld~~fv~eae~~gl~~lkGhr~vgGmRasiynA~~~e~veaL~~fm  357 (365)
T COG1932         287 -DFYRNLVAKANRSRMNVTFTLV--------DAELDKGFVAEAEAAGLIYLKGHRSVGGLRASIYNAVPLEDVEALTDFM  357 (365)
T ss_pred             -CccccccchhhccceeEEEEcC--------cHHHHHHHHHHHHHcCCceeccccCCCceeeeeecCCCHHHHHHHHHHH
Confidence             1111111113344443 34442        2334567888899999888766332334899888889999999999999


Q ss_pred             HHHHhh
Q 011777          471 DYSMSK  476 (477)
Q Consensus       471 ~~~l~~  476 (477)
                      +.+.++
T Consensus       358 ~~f~~~  363 (365)
T COG1932         358 DWFEET  363 (365)
T ss_pred             HHHHHh
Confidence            887653

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=98.38  E-value=8.3e-05  Score=79.43  Aligned_cols=305  Identities=13%  Similarity=0.124  Sum_probs=156.4

Q ss_pred             HHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccC-CCCCCCCC-CCCe
Q 011777          139 AIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTAL-NTWKYPIP-QGEI  216 (477)
Q Consensus       139 ~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~-~~~~~~~~-~~~~  216 (477)
                      ...+..+..++.++.+ ...+.+||.|.+|.+++..+.  ++++.|+ ++...|-+...++.+++. +.|-.+.. ..|+
T Consensus       196 ~i~eAe~~AA~~fgAd-~tyfvvNGTS~~n~av~~a~~--~~Gd~VL-vdRN~HKSv~haLilsga~PVYl~P~rn~~Gi  271 (714)
T PRK15400        196 PHKEAEEYIARVFNAD-RSYMVTNGTSTANKIVGMYSA--PAGSTVL-IDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGI  271 (714)
T ss_pred             HHHHHHHHHHHHhCCC-cEEEEeCchHHHHHHHHHHhc--CCCCEEE-eecccHHHHHHHHHHcCCeEEEecccccccCC
Confidence            3556666666667553 456667777888877766542  3445555 555556555555555543 33322111 1111


Q ss_pred             eeecCCCCcCCCCCCCHHHHHHHHHHHHhccCC--CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcc
Q 011777          217 HHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS--GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQ  294 (477)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~--~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~  294 (477)
                      .....+    ..|+      .+.+++.|+....  ...++||..|..  .|.+..    +++|.++|+.++  |++||++
T Consensus       272 ~g~I~~----~~~~------~e~i~~~i~~~p~ak~p~~~vit~pTY--dG~~yd----~~~I~~~~~~~~--ilvDEAw  333 (714)
T PRK15400        272 LGGIPQ----SEFQ------HATIAKRVKETPNATWPVHAVITNSTY--DGLLYN----TDFIKKTLDVKS--IHFDSAW  333 (714)
T ss_pred             ccCCCc----cccC------HHHHHHHHHhCccccCccEEEEECCCC--ccEecC----HHHHHHHhCCCC--EEEEccc
Confidence            110000    0111      3677777764321  122577777632  355555    789999999887  6899998


Q ss_pred             cCccCCCCCCc----cccccCCCc-c--eeeec--ccccC---c--cce-EEEEeCHHHHHhhcccccccCCCCcHHHHH
Q 011777          295 TGFGRTGSHYW----GFETQGVIP-D--IVTMA--KGIGN---G--LPL-GAVVTTPEIANVMAQKIQFNTFGGNPVCSA  359 (477)
Q Consensus       295 ~gfgr~G~~~~----~~~~~gv~p-D--ivt~s--K~lg~---G--~pi-g~v~~~~~~~~~~~~~~~~~t~~~~~~~~a  359 (477)
                      .+.-.-. ..+    +++ .|-.+ |  ++|=|  |.+++   +  +-+ |. +-.+.+.+.+.   ...|-+.+.+-+|
T Consensus       334 gah~~F~-p~~~~~sam~-~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~-vd~~~~n~a~~---m~~STSPsY~l~A  407 (714)
T PRK15400        334 VPYTNFS-PIYEGKCGMS-GGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD-VNEETFNEAYM---MHTTTSPHYGIVA  407 (714)
T ss_pred             hhhhccC-cccCCcChhh-cCCCCCCceEEEEchhhcccchhHHhHHHHcCC-CCHHHHHHHHH---HHcCCCcHHHHHH
Confidence            7652211 111    111 12211 3  55444  77764   2  111 21 11122222222   2233445555555


Q ss_pred             HHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhC-CCceeee--------------------ccce------e--
Q 011777          360 GGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERH-DIIGDVR--------------------GRGL------M--  407 (477)
Q Consensus       360 aa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~-~~~~~v~--------------------g~g~------~--  407 (477)
                      ..-.+...++.   +.+.+...+....+|+.|.++.... +....+.                    |...      +  
T Consensus       408 SLD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lD  487 (714)
T PRK15400        408 STETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLD  487 (714)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCcccccccccccC
Confidence            55555555542   4577788888888888887753210 0000000                    0000      0  


Q ss_pred             -EEEEEeeCCCC----CCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          408 -VGMELVTDRKE----KTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       408 -~~i~~~~~~~~----~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                       .-+.+......    ....+..+..+.+.|.++||.+...+  .+.+-|.++...|+++++.+++.|.+.
T Consensus       488 P~Klti~tpgi~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~d--~~~iLfl~s~g~t~~~~~~L~~aL~~f  556 (714)
T PRK15400        488 PIKVTLLTPGMKKDGTMSDFGIPASIVAKYLDEHGIVVEKTG--PYNLLFLFSIGIDKTKALSLLRALTDF  556 (714)
T ss_pred             CceEEEEeCCCCCCccccccCCCHHHHHHHHHHcCCEEEecC--CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence             00001000000    00012224567788899999998765  455667778889999999999998765

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=98.25  E-value=0.00023  Score=66.67  Aligned_cols=330  Identities=17%  Similarity=0.158  Sum_probs=181.0

Q ss_pred             ccCCCCCHHHHHHHHHHHhhcc------ccccc----cCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHh
Q 011777          108 VSCGHCHPDVLNAIFEQSKLLQ------HATTI----YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARL  177 (477)
Q Consensus       108 ~~lGh~~p~v~~Av~~~l~~~~------~~~~~----~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~  177 (477)
                      ++||..+....+.+.+.+++..      |..+.    ...+.   ....++...+.+.+.|-++||=|--+...+-...+
T Consensus        74 NSLGLmPK~t~~~~~~eLDkWak~av~gH~~GkvPW~~~De~---il~l~~~iVGA~e~EvavmNsLTvNlh~Ll~sFyK  150 (465)
T KOG3846|consen   74 NSLGLMPKSTRNSINAELDKWAKCAVEGHFKGKVPWVSIDEP---ILPLLAPIVGAQENEVAVMNSLTVNLHSLLISFYK  150 (465)
T ss_pred             cccccCchhhHhHHHHHHHHHHhhhhhcccccccceeecchh---hhhhhhhhccCCchhhhhHhhhhhHHHHHHHHhcC
Confidence            3589888888888888887632      21111    11233   33445555566667788888776444443333333


Q ss_pred             cc-CCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHH--HHHHHHHHHhccCCCCeeE
Q 011777          178 ST-GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAAR--YAQDLQDHIDFGTSGKVAG  254 (477)
Q Consensus       178 ~~-~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~le~~i~~~~~~~~a~  254 (477)
                      .| +|.+|+.-..+|.....+.-+........   +......+.   |.      ++++  ..+|+.+.|+.. .+.+|.
T Consensus       151 PTekR~KILlE~kaFPSDhYAiesQ~~lhG~~---~e~sm~~ie---PR------EGEetlRteDILd~IEkn-gDeiA~  217 (465)
T KOG3846|consen  151 PTEKRFKILLEKKAFPSDHYAIESQCKLHGIS---PENSMIQIE---PR------EGEETLRTEDILDTIEKN-GDEIAL  217 (465)
T ss_pred             CcchhhhhhhccCCCCchHHHHHhhhhhcCCC---hHHheEEec---cc------ccccchhHHHHHHHHHhc-CCeEEE
Confidence            33 45677776667765444333221110000   001111110   10      1111  136666667643 468999


Q ss_pred             EEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccCc-cceEE
Q 011777          255 FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNG-LPLGA  331 (477)
Q Consensus       255 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G-~pig~  331 (477)
                      |.+..+|--+|....    +.+|-..-+..|+++=+|=+++ +|-   -..-...||+  |..|  -=|-+..| =.||.
T Consensus       218 v~fSGvqyYTGQ~Fd----i~aIT~Agq~kgc~VGfDLAHA-vgN---VpL~LHdWgV--DFACWCSYKYlnaGaGgIgG  287 (465)
T KOG3846|consen  218 VCFSGVQYYTGQYFD----IGAITFAGQFKGCLVGFDLAHA-VGN---VPLQLHDWGV--DFACWCSYKYLNAGAGGIGG  287 (465)
T ss_pred             EEeecceeecccccc----hhhhhhcccCCCcEechhhhhh-hcC---CceEEeecCC--ceEEEeeecccccCCCccce
Confidence            999989888886554    6666665666799998998876 442   2333345565  5554  33766644 25666


Q ss_pred             EEeCHHHHHhhccc------------------------ccccCCCCcH-HHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 011777          332 VVTTPEIANVMAQK------------------------IQFNTFGGNP-VCSAGGLAVLRVIDKERRQAHCADVGSHLLG  386 (477)
Q Consensus       332 v~~~~~~~~~~~~~------------------------~~~~t~~~~~-~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~  386 (477)
                      +...++........                        ..+.-.+.+| +..+|....|++...-. .+.++++.-+|-.
T Consensus       288 lFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~-~~~lRkrS~lLTg  366 (465)
T KOG3846|consen  288 LFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFN-INELRKRSLLLTG  366 (465)
T ss_pred             eeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhh-HHHHhhhhhhHHh
Confidence            66554433221111                        0111112233 34445556676654322 3444444433333


Q ss_pred             HHHHHHHhC-----CC-----------ceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEE
Q 011777          387 RLRTLQERH-----DI-----------IGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVF  450 (477)
Q Consensus       387 ~L~~l~~~~-----~~-----------~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~i  450 (477)
                      -|..+.+..     +.           +..+..+|.-+.+.|..+          ...++++|.++|+++-.-  ..|+|
T Consensus       367 YleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fssp----------~~~vfqeL~krGv~~DkR--~PNvI  434 (465)
T KOG3846|consen  367 YLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSSP----------TPKVFQELHKRGVIGDKR--RPNVI  434 (465)
T ss_pred             HHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeCCC----------chHHHHHHHHcCeecccc--CCCce
Confidence            333332211     10           112333455555555432          357899999999998753  47899


Q ss_pred             EEeC-CCCCcHHHHHHHHHHHHHHHhh
Q 011777          451 RIKP-PMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       451 Ri~p-~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      |+.| |+..+-.|+-.+++.|.+++..
T Consensus       435 RvAPvpLYN~f~Dvy~f~n~L~e~~d~  461 (465)
T KOG3846|consen  435 RVAPVPLYNTFSDVYIFVNALNEAMDK  461 (465)
T ss_pred             EeecchhhccHHHHHHHHHHHHHHHHH
Confidence            9987 6788999999999999998864

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=98.16  E-value=0.00036  Score=68.70  Aligned_cols=226  Identities=12%  Similarity=0.052  Sum_probs=118.0

Q ss_pred             HHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCc-cc---cccCC
Q 011777          237 AQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW-GF---ETQGV  312 (477)
Q Consensus       237 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~-~~---~~~gv  312 (477)
                      .+++|+.++..+++.+.+|+ .......+ ..  ++.+++|.++|++||+..|+.-+|+ .  ..++.. -+   ...|.
T Consensus       141 ~~~ie~~i~~~G~~~iLcvl-tttscfap-r~--~D~i~~IakiC~~~~IPhlvNnAYg-v--Q~~~~~~~i~~a~~~GR  213 (389)
T PF05889_consen  141 LEAIEAKIEELGADNILCVL-TTTSCFAP-RL--PDDIEEIAKICKEYDIPHLVNNAYG-V--QSSKCMHLIQQAWRVGR  213 (389)
T ss_dssp             HHHHHHHHHHHCGGGEEEEE-EESSTTTT-B------HHHHHHHHHHHT--EEEEGTTT-T--T-HHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHhCCCCeEEEE-EecCccCC-CC--CccHHHHHHHHHHcCCceEEccchh-h--hHHHHHHHHHHHHhcCC
Confidence            46777777654444454544 44444444 22  2348999999999999999999885 4  000000 00   00122


Q ss_pred             Cc-ceeeecccccCccceEEEEe-CHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHH
Q 011777          313 IP-DIVTMAKGIGNGLPLGAVVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGR  387 (477)
Q Consensus       313 ~p-Divt~sK~lg~G~pig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~  387 (477)
                      .| ++-++.|-|--+..-+.+.+ .+..++.+....-+-.+..+.+-   ....|..+..   ..++....+...+++++
T Consensus       214 vda~vqS~dkNF~VPvGgai~As~~~~~i~~vs~~YpGRas~sp~ld---~~itLl~LG~~g~~~ll~~r~~~f~~l~er  290 (389)
T PF05889_consen  214 VDAFVQSTDKNFMVPVGGAIMASFDPSGILAVSKEYPGRASASPSLD---LFITLLSLGCTGYGALLKERKASFPYLKER  290 (389)
T ss_dssp             CSEEEEEHHHHHCEESSHEEEEESSHHHHHHHHHTSHSHBTSHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceeeeecCCCEEecCCCcEEEecCHHHHHHHHHHhhhhhhcccchH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            22 22345566541111123333 34566555432211111111111   1222222222   35667777888999999


Q ss_pred             HHHHHHhCC-CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceee----ccCC---------CCCEEEEe
Q 011777          388 LRTLQERHD-IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVG----KGGL---------HGNVFRIK  453 (477)
Q Consensus       388 L~~l~~~~~-~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~~~---------~~~~iRi~  453 (477)
                      |+++.++++ .+.+.+.....+.+++..-...  .. .....+...|..+||.-.    +...         ...++-+.
T Consensus       291 l~~~aee~~e~ll~~p~N~is~a~tl~~l~~~--~~-k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~A  367 (389)
T PF05889_consen  291 LKKWAEEVGERLLETPRNHISMAFTLDTLYEI--SQ-KDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAA  367 (389)
T ss_dssp             HHHHHHHTTEEBSSSTT-SSEEEEE-TTCCTC--CS-SHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEEE
T ss_pred             HHHHHHHhhhhhcCCCCCCeeEEEECccchhh--cc-chhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHHH
Confidence            999998886 3444444444556665321111  11 234678889999987422    2111         12577786


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHh
Q 011777          454 PPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       454 p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      -.+.+++||||.++++|+++++
T Consensus       368 saiG~~~eevd~~v~rL~k~i~  389 (389)
T PF05889_consen  368 SAIGMTREEVDYFVKRLDKIIK  389 (389)
T ss_dssp             E-TT--HHHHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHhC
Confidence            6788999999999999999875

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=98.12  E-value=0.00025  Score=68.62  Aligned_cols=210  Identities=17%  Similarity=0.146  Sum_probs=115.5

Q ss_pred             CCHHHHHHHHHH-Hhhc-cccccc--cCChHHHHHHHHHHhhCCCCCCEEEEe---CChHHHHHHHHHHHHhccCCceEE
Q 011777          113 CHPDVLNAIFEQ-SKLL-QHATTI--YLHHAIADFAEALASKMPGNLKVVYFV---NSGTEANELAMLMARLSTGNLGMI  185 (477)
Q Consensus       113 ~~p~v~~Av~~~-l~~~-~~~~~~--~~~~~~~~l~~~La~~~~~~~~~v~~~---~sGseA~~~Al~~ar~~~~~~~ii  185 (477)
                      |+.+|.+|+++. +... ...++.  |.+..+..|.+-.++.+..  +..++-   -|||+|+..++.....  +.++++
T Consensus        25 Nq~KVL~Af~~~~vs~~hf~~tTGYGY~D~GRd~le~iyA~vfga--E~ALVRpq~vSGTHAi~~~Lfg~Lr--pGD~ll  100 (403)
T PF06838_consen   25 NQLKVLKAFQENRVSDSHFAGTTGYGYDDIGRDKLERIYADVFGA--EDALVRPQFVSGTHAIALALFGVLR--PGDELL  100 (403)
T ss_dssp             HHHHHHHHHHHTT--GGGCS---TT-TT-HHHHHHHHHHHHHCT---SEEEEETTS-SHHHHHHHHHHHH----TT-EEE
T ss_pred             HHHHHHHHHHHcCCChhhcCCCCcCCCCCccHHHHHHHHHHHhCc--hhhhhcccccchHHHHHHHHHhcCC--CCCeEE
Confidence            445677776552 1111 112222  3456688899999999965  445443   3899999999986654  678888


Q ss_pred             EEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCC
Q 011777          186 ALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGG  265 (477)
Q Consensus       186 ~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G  265 (477)
                      +..|.=.-....++...+..  .......|+..-.++....+.++      .+.+++.++    .++++|.+.=.-|=.-
T Consensus       101 ~~tG~PYDTL~~VIG~~g~~--~GSL~e~Gi~Y~~v~L~~dg~~D------~~~i~~~~~----~~tk~v~IQRSrGYs~  168 (403)
T PF06838_consen  101 SITGKPYDTLEEVIGIRGNG--PGSLKEFGIKYREVPLTEDGTID------WEAIKKALK----PNTKMVLIQRSRGYSW  168 (403)
T ss_dssp             ESSSS--CCHHHHHTSSSSS--SSSTGGGT-EEEE--B-TTSSB-------HHHHHHHHH----TTEEEEEEE-S-TTSS
T ss_pred             EcCCCchhhHHHHhCCCCCC--CCChHHhCceeEEEeecCCCCcC------HHHHHHhhc----cCceEEEEecCCCCCC
Confidence            87764444444444444321  11111234443333222222222      577888887    5788888755433222


Q ss_pred             eeeCCchhHHHHHHHHHHh--CcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccCcc-ce-EEEEeCHHHH
Q 011777          266 AVELAPGYLKLVYDIVRKA--GGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGL-PL-GAVVTTPEIA  339 (477)
Q Consensus       266 ~~~~~~~~l~~l~~l~~~~--gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~-pi-g~v~~~~~~~  339 (477)
                      --..+-+.++++.+++|+.  ++++.+|..|..|--+-      +-..+-.|++.  +=|..|||+ |. ||++++++++
T Consensus       169 R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~------EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lV  242 (403)
T PF06838_consen  169 RPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQ------EPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLV  242 (403)
T ss_dssp             S----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-------GGGGT-SEEEEETTSGGGTTT-SS-EEEEESHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceecccc------CccccchhheeccceeCCCCCccCcCCEEechHHHH
Confidence            1223445566666666654  78999999998774332      33345668774  559999985 44 7999999999


Q ss_pred             Hhhcc
Q 011777          340 NVMAQ  344 (477)
Q Consensus       340 ~~~~~  344 (477)
                      +....
T Consensus       243 e~~a~  247 (403)
T PF06838_consen  243 ERAAY  247 (403)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            87654

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PRK12566 glycine dehydrogenase; Provisional

Probab=98.05  E-value=0.0033  Score=69.04  Aligned_cols=271  Identities=13%  Similarity=0.105  Sum_probs=149.4

Q ss_pred             HHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccC--CceEEEEccCccCCcccccccccCCCCCCCCCCCCee
Q 011777          140 IADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTG--NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIH  217 (477)
Q Consensus       140 ~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~--~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~  217 (477)
                      ..++...++++++-+..+.-....+|.+-| |+.+++.+++  +.++++ ..+-|-.+..++.....        ..|+.
T Consensus       126 l~e~Qtmi~~LtGm~vaNASl~D~atA~aE-A~~ma~~~~~~k~~~~~v-~~~~hP~~~~v~~t~~~--------~~g~~  195 (954)
T PRK12566        126 LLNFQQMTIDLTGLDLANASLLDEATAAAE-AMALAKRVAKSKSNRFFV-DEHCHPQTLSVLRTRAE--------GFGFE  195 (954)
T ss_pred             HHHHHHHHHHHhCchhhhhhhccchhHHHH-HHHHHHHHhhcCCCEEEE-CCCCCHHHHHHHHHhhh--------cCCcE
Confidence            457777888887543333344556666666 4444544444  455555 44555443333322111        12444


Q ss_pred             eecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc--Ccc-
Q 011777          218 HVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD--EVQ-  294 (477)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D--Ev~-  294 (477)
                      .+.                 +++++.+.    +++++|++...+ .-|.+..    +++|.++++++|+++|+-  =.- 
T Consensus       196 i~~-----------------~~~~~~~~----~~~~~v~vq~P~-~~G~i~d----~~~i~~~~h~~gal~~~~~d~laL  249 (954)
T PRK12566        196 LVV-----------------DAVDNLAA----HAVFGALLQYPD-THGEIRD----LRPLIDQLHGQQALACVAADLLSL  249 (954)
T ss_pred             EEE-----------------cchhhcCC----CCEEEEEEECCC-CceEEcc----HHHHHHHHHHcCCEEEEEeCHHHH
Confidence            331                 34555443    468899885433 3455543    899999999999998732  111 


Q ss_pred             cCccCCCCCCccccccCCCcceee-----eccccc-CccceEEEEeCHHHHHhhcccc----------------------
Q 011777          295 TGFGRTGSHYWGFETQGVIPDIVT-----MAKGIG-NGLPLGAVVTTPEIANVMAQKI----------------------  346 (477)
Q Consensus       295 ~gfgr~G~~~~~~~~~gv~pDivt-----~sK~lg-~G~pig~v~~~~~~~~~~~~~~----------------------  346 (477)
                      +.+-..|         +.-.||++     |+=.++ ||.-.|++.+++++...+..+.                      
T Consensus       250 ~ll~~Pg---------e~GADI~vG~~Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQ  320 (954)
T PRK12566        250 LVLTPPG---------ELGADVVLGSTQRFGVPMGYGGPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQ  320 (954)
T ss_pred             hCCCChh---------hcCCcEEeeCCCcCCCCCCCCCCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHH
Confidence            1111111         12347764     344444 4566889999998887775321                      


Q ss_pred             ------cccCCCCcHHHHHHHHHHHH-hhchhhH---HHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCC
Q 011777          347 ------QFNTFGGNPVCSAGGLAVLR-VIDKERR---QAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDR  416 (477)
Q Consensus       347 ------~~~t~~~~~~~~aaa~a~l~-~l~~~~~---~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~  416 (477)
                            ..+..+.|...+|.+.+..- .+..+.+   -+++..+..++.++|.+.  .+....    ...|--+.+.-. 
T Consensus       321 HIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~--g~~~~~----~~fF~~~~v~~~-  393 (954)
T PRK12566        321 HIRREKANSNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEAK--GIKRLN----RHFFDTLTLEVG-  393 (954)
T ss_pred             HhhhccccchhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc--CCcccc----CCccceEEEEcc-
Confidence                  11233334333333222222 2233433   344555666777777663  222211    122222222111 


Q ss_pred             CCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHH
Q 011777          417 KEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALD  471 (477)
Q Consensus       417 ~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~  471 (477)
                           .  ...++.+...++|+.++...  .+.+.++.-=.+|.+|++.+++.+.
T Consensus       394 -----~--~~~~~~~~a~~~~~n~r~~~--~~~~~~s~de~~~~~~~~~~~~~f~  439 (954)
T PRK12566        394 -----G--AQAAIIESAEAARINLRILG--RGRLGVSLDETCDEATVARLFDIFL  439 (954)
T ss_pred             -----C--CHHHHHHHHHHCCCeeEEeC--CCeEEEEeCCCCCHHHHHHHHHHhc
Confidence                 0  24578888889999988653  5678898888899999999999883

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=98.03  E-value=0.00084  Score=68.91  Aligned_cols=301  Identities=17%  Similarity=0.221  Sum_probs=174.2

Q ss_pred             hHHHHHHHHHHhhCCCCCCEEEE-eCChHHHHHHHHHHHHhcc-----CCceEEEEccCccCCcccccccccCCCCCCCC
Q 011777          138 HAIADFAEALASKMPGNLKVVYF-VNSGTEANELAMLMARLST-----GNLGMIALRNAYHGGSSGTIGLTALNTWKYPI  211 (477)
Q Consensus       138 ~~~~~l~~~La~~~~~~~~~v~~-~~sGseA~~~Al~~ar~~~-----~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  211 (477)
                      ....+|.+.|++..+  .|.+.| -|||++.-.+.++..|.|.     +...|-...-+-||...+...+.         
T Consensus       582 ~lf~~Le~~Lc~iTG--~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~Ma---------  650 (1001)
T KOG2040|consen  582 QLFTELEKDLCEITG--FDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMA---------  650 (1001)
T ss_pred             HHHHHHHHHhheeec--ccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChhhHHhc---------
Confidence            345688888888874  455555 5789999888899888873     22344445568888765544443         


Q ss_pred             CCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777          212 PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD  291 (477)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  291 (477)
                         |...+++.....+..+      +.+|+...++ +.++.+++++.-. ++-|+..+   -++++.++.++||.-+..|
T Consensus       651 ---gmkvvpV~~~~~G~id------~~dLk~kaek-h~~~Laa~MvTYP-ST~GvfE~---~i~d~cd~iHehGGQVYlD  716 (1001)
T KOG2040|consen  651 ---GMKVVPVGCDANGNID------MVDLKAKAEK-HKDNLAALMVTYP-STHGVFEE---GIDDICDIIHEHGGQVYLD  716 (1001)
T ss_pred             ---CCEEEEeeccCCCCcc------HHHHHHHHHH-hhhhhheeEEecc-cccccccc---cHHHHHHHHHhcCCEEEec
Confidence               3333333222222222      4666665553 3567888777643 44454433   3788999999999999999


Q ss_pred             Cc----ccCccCCCCCCcccc--ccCCCcceeeecccccC-ccceEEEEeCHHHHHhhccc-----------ccccCCC-
Q 011777          292 EV----QTGFGRTGSHYWGFE--TQGVIPDIVTMAKGIGN-GLPLGAVVTTPEIANVMAQK-----------IQFNTFG-  352 (477)
Q Consensus       292 Ev----~~gfgr~G~~~~~~~--~~gv~pDivt~sK~lg~-G~pig~v~~~~~~~~~~~~~-----------~~~~t~~-  352 (477)
                      -+    |-|+.|.|  .++.+  |..+.   -||.=.-|| |..+|-+.+++.++..+..-           .-.++.+ 
T Consensus       717 GANMNAqVGlc~pG--d~GaDV~HLNLH---KTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsa  791 (1001)
T KOG2040|consen  717 GANMNAQVGLCRPG--DIGADVCHLNLH---KTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSA  791 (1001)
T ss_pred             CCCccceecccCCc--cccccceeeccc---ceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceec
Confidence            75    66777777  22222  11110   033333344 56777777777766554321           0112222 


Q ss_pred             ---CcHHHHHHHHHHHHhhchhhHH---HHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeC-CCCCCccHHH
Q 011777          353 ---GNPVCSAGGLAVLRVIDKERRQ---AHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTD-RKEKTPAKAE  425 (477)
Q Consensus       353 ---~~~~~~aaa~a~l~~l~~~~~~---~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~-~~~~~~~~~~  425 (477)
                         |+..-....++.++.+....+.   +-..-+..|..++|..   .|.++. ....| .+.-+|.-| +.-|.....+
T Consensus       792 aP~Gsa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~---hYkil~-~~~~~-~vaHEFIlD~r~fK~~agie  866 (1001)
T KOG2040|consen  792 APWGSALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLES---HYKILF-RGENG-LVAHEFILDLRPFKKTAGIE  866 (1001)
T ss_pred             cCCCcceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhh---ccceeE-ecCCc-ceeeeeeeechhhccccCCc
Confidence               2233333455677776554432   2333456677777655   344332 12223 333333211 1122223345


Q ss_pred             HHHHHHHHHHcCceeeccC-CCCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          426 TAVLFEKLRELGVLVGKGG-LHGNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       426 ~~~~~~~l~~~Gv~v~~~~-~~~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      +..++++|.+.|....+.. +-.+.+.|-|.-.-+++|+|+++++|-.+
T Consensus       867 avDvAKRL~DYgFHaPTmswPV~gtLMIEPTESE~k~ElDRfcdAliSI  915 (1001)
T KOG2040|consen  867 AVDVAKRLMDYGFHAPTMSWPVAGTLMIEPTESEDKAELDRFCDALISI  915 (1001)
T ss_pred             HHHHHHHHHhccCCCCccccccCCceEeccCccccHHHHHHHHHHHHHH
Confidence            6789999999998764321 12467889988888999999999998654

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=97.93  E-value=0.0012  Score=68.01  Aligned_cols=302  Identities=15%  Similarity=0.107  Sum_probs=142.8

Q ss_pred             hHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccC-CCCCCCCCCCCe
Q 011777          138 HAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTAL-NTWKYPIPQGEI  216 (477)
Q Consensus       138 ~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~-~~~~~~~~~~~~  216 (477)
                      -...+..+..++.++.+ ...|.+||.|-||...+....  +.+++|++- ...|-+....+.+++. +.|..+.     
T Consensus        70 G~i~eAqe~aA~~fgAd-~tyFvvNGTS~ank~vi~a~~--~~GD~VLvd-RN~HKSi~~glilaGa~Pvyl~p~-----  140 (557)
T COG1982          70 GPIKEAQELAARVFGAD-HTYFVVNGTSTANKAVINAVL--TPGDKVLVD-RNCHKSIHHGLILAGATPVYLEPS-----  140 (557)
T ss_pred             ccHHHHHHHHHHHhCCC-ceEEEECCccHHHHHHHHhhc--CCCCEEEec-CCccHHHHHHHHHcCCceEEecCC-----
Confidence            34566666666777553 467778888888887776442  345555554 4455544444444432 3322211     


Q ss_pred             eeecCCCCcCCC-CCCCHHHHHHHHHHHHhccCCCC-eeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcc
Q 011777          217 HHVVNPDPYHGS-FGSDAARYAQDLQDHIDFGTSGK-VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQ  294 (477)
Q Consensus       217 ~~~~~~~~~~~~-~~~~~~~~~~~le~~i~~~~~~~-~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~  294 (477)
                               +.+ ++--..-..+.+++.+... +.. ..+||..|..  .|++..    +++|.+.+.++++++..||.+
T Consensus       141 ---------~np~~gi~ggI~~~~~~~~l~~~-~~~~k~~vitnpTY--dGv~~n----~~~i~~~~~~~~a~v~~deah  204 (557)
T COG1982         141 ---------RNPLYGIIGGIPLETFKEALLAH-PDAEKLAVITNPTY--DGVCYN----LRKIVELLHHYGAWVLYDEAH  204 (557)
T ss_pred             ---------CCccccccCCCCHHHHHHHHHhC-hhhheeEEEecCcc--ceEeec----HHHHHHHHhhcCceEEhhhcC
Confidence                     111 1110000135565555422 222 5677776633  355555    899999999999999999987


Q ss_pred             cCc-cCCCCCCccccccCCCcceeeec--ccccCccceEEEEeC-------HHHHHhhcccccccCCCCcHHHHHHHHHH
Q 011777          295 TGF-GRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTT-------PEIANVMAQKIQFNTFGGNPVCSAGGLAV  364 (477)
Q Consensus       295 ~gf-gr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~-------~~~~~~~~~~~~~~t~~~~~~~~aaa~a~  364 (477)
                      .-. +..+  ...-....-..|++|-|  |.+++.---+.+-.+       +++.+.+.  .+.+ -+.+...+ |.+.+
T Consensus       205 ~~~~~~~~--~l~~~~~~~~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~~r~nea~~--~h~S-TSPsY~l~-ASlD~  278 (557)
T COG1982         205 PAHFDFSP--MLPESALNGGADFVTQSTHKLLAALSQASMIHVKDGRAVNHERFNEALM--MHQS-TSPSYPLM-ASLDV  278 (557)
T ss_pred             cccccccc--cCcchhhhcCceEEEechhhhhhhhhhhHHHhhCCCccCCHHHHHHHHH--HHcc-CCchHHHH-HHHHH
Confidence            421 2222  11111122334677655  766642222333333       22333332  1222 23333322 33333


Q ss_pred             HHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccce------eEEEEEeeCC-----CCC----C-ccHHH
Q 011777          365 LRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGL------MVGMELVTDR-----KEK----T-PAKAE  425 (477)
Q Consensus       365 l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~------~~~i~~~~~~-----~~~----~-~~~~~  425 (477)
                      -+.+..   ..+.+..-+..-.+++.+++.....+.+.. .+.+.      +-|++-..++     ..|    . ..+..
T Consensus       279 Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~~Gip  357 (557)
T COG1982         279 ARMQEGNAGRELWQEVIDEAIDFRKALRRLINEIGFFPV-LQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPEFGIP  357 (557)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCeee-ccccccCCcccccccccccccceeccccEEEEecCCCCCc
Confidence            222222   123222223333333333333333331111 11111      1122111100     000    1 12334


Q ss_pred             HHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHH
Q 011777          426 TAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALD  471 (477)
Q Consensus       426 ~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~  471 (477)
                      +..+.+.|+++|++....+...+.+-|.|.-..+..+++.+++.+.
T Consensus       358 g~~v~~~L~e~gii~e~~~d~~~lll~~~~~gk~~~lv~~L~~f~r  403 (557)
T COG1982         358 GAIVAKYLREHGIIPEETGDYSNLLLFSPGIGKWQTLVDRLLEFKR  403 (557)
T ss_pred             HHHHHHHHHHcCCeeeecCCceeeEEeeeccchHHHHHHHHHHHHH
Confidence            5678889999999998877665555554432445566666666554

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=97.77  E-value=0.0016  Score=61.39  Aligned_cols=193  Identities=17%  Similarity=0.226  Sum_probs=106.4

Q ss_pred             cCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCC--CCCCcccccc---CCCccee--eecccccC-ccceEE
Q 011777          260 IQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRT--GSHYWGFETQ---GVIPDIV--TMAKGIGN-GLPLGA  331 (477)
Q Consensus       260 i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~--G~~~~~~~~~---gv~pDiv--t~sK~lg~-G~pig~  331 (477)
                      -++++| +-|+++.+.+|.++-++.+.+-.+|-+|.||.-.  ....|+..++   | .+-++  +|+|.+|- +-|+|-
T Consensus       187 AhNPTG-mDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g-~e~fv~QSFaKNfGlYneRvGn  264 (410)
T KOG1412|consen  187 AHNPTG-MDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQG-FELFVCQSFAKNFGLYNERVGN  264 (410)
T ss_pred             ccCCCC-CCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcC-CeEEEEhhhhhhcccccccccc
Confidence            466677 7889999999999999999999999999999422  1123444332   3 22233  58999994 778773


Q ss_pred             ---EEeCHHHHHhhccc---ccccCCC-CcHHHHHHHHHHHHhhch-hhH-------HHHHHHHHHHHHHHHHHHHHhCC
Q 011777          332 ---VVTTPEIANVMAQK---IQFNTFG-GNPVCSAGGLAVLRVIDK-ERR-------QAHCADVGSHLLGRLRTLQERHD  396 (477)
Q Consensus       332 ---v~~~~~~~~~~~~~---~~~~t~~-~~~~~~aaa~a~l~~l~~-~~~-------~~~~~~~~~~l~~~L~~l~~~~~  396 (477)
                         ++-++.++..+...   ..-++++ .+..+......+|+.-+. +++       -.++.+++..|++.|..+.  -|
T Consensus       265 ltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~L~aL~--TP  342 (410)
T KOG1412|consen  265 LTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDHLVALK--TP  342 (410)
T ss_pred             eEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC
Confidence               33345555444322   1113333 333344444445543221 233       3444555555555555552  22


Q ss_pred             Cc-ee-eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          397 II-GD-VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       397 ~~-~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      .- .. ++..|+|..--+             ...-++.|. ++.|+..+.|      |++.+ ..+...+|....+++++
T Consensus       343 GtWDHI~~QiGMFSyTGL-------------tp~qV~~li~~h~vyLl~~G------RInis-GLN~~NveyVAkAIde~  402 (410)
T KOG1412|consen  343 GTWDHITQQIGMFSYTGL-------------TPAQVDHLIENHKVYLLSDG------RINIS-GLNMKNVEYVAKAIDET  402 (410)
T ss_pred             CcHHHHHhhccceeecCC-------------CHHHHHHHHHhceEEEecCC------cEeee-ccccccHHHHHHHHHHH
Confidence            11 11 233454432111             123344554 4577776543      45433 34567788888888877


Q ss_pred             Hhh
Q 011777          474 MSK  476 (477)
Q Consensus       474 l~~  476 (477)
                      .+.
T Consensus       403 Vr~  405 (410)
T KOG1412|consen  403 VRA  405 (410)
T ss_pred             HHh
Confidence            653

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=97.59  E-value=0.015  Score=58.02  Aligned_cols=322  Identities=15%  Similarity=0.153  Sum_probs=156.3

Q ss_pred             CHHHHHHHHHHHhhcccc-cccc--CChHHHHHHHHHHhhCCCCCC-EEEEeCChHHHHHHHHHHHHhccC------Cce
Q 011777          114 HPDVLNAIFEQSKLLQHA-TTIY--LHHAIADFAEALASKMPGNLK-VVYFVNSGTEANELAMLMARLSTG------NLG  183 (477)
Q Consensus       114 ~p~v~~Av~~~l~~~~~~-~~~~--~~~~~~~l~~~La~~~~~~~~-~v~~~~sGseA~~~Al~~ar~~~~------~~~  183 (477)
                      +++..+-+.+.+.+.... ...|  ......+....++.+++.+.+ -=.-|.|||||..++.|.-+....      +..
T Consensus        93 ~~~~~~l~~~~~~k~N~l~~d~fp~~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~  172 (491)
T KOG1383|consen   93 EPELDKLIMEAYNKFNPLHPDEFPVVRKLEAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPN  172 (491)
T ss_pred             CcchhhHHHHHHhhcCccCccccchhHHHHHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCCCCcc
Confidence            455555555555543111 1112  123345566666777765433 234677999998888876543221      123


Q ss_pred             EEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCC-CCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCC
Q 011777          184 MIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNP-DPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQG  262 (477)
Q Consensus       184 ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~  262 (477)
                      |++... -|-...-+       ..++.+   .+..+++. ..++    -|    ...+.+.++    +++.+++.+-.+-
T Consensus       173 iv~~~~-v~~a~eK~-------a~yf~v---~l~~V~~~~~~~~----~D----~~k~~~~i~----eNti~lv~~~~~~  229 (491)
T KOG1383|consen  173 IVTPQN-VHAAFEKA-------ARYFEV---ELREVPLDEGDYR----VD----PGKVVRMID----ENTIMLVGSLPNF  229 (491)
T ss_pred             ccchHH-HHHHHHHH-------HhhEEE---EEEeeeccccceE----ec----HHHHHHHhc----cceEEEEEEcCCC
Confidence            333211 11000000       000000   12222221 1111    11    244555554    5677777776666


Q ss_pred             CCCeeeCCchhHHHHHHHHHH-hCcEEEEcCcccCccCC-C---CCCccccccCCCcceeeecccccC-ccceEEEEeCH
Q 011777          263 VGGAVELAPGYLKLVYDIVRK-AGGVCIADEVQTGFGRT-G---SHYWGFETQGVIPDIVTMAKGIGN-GLPLGAVVTTP  336 (477)
Q Consensus       263 ~~G~~~~~~~~l~~l~~l~~~-~gillI~DEv~~gfgr~-G---~~~~~~~~~gv~pDivt~sK~lg~-G~pig~v~~~~  336 (477)
                      +.|.+-+    .++|.++..+ +++.+++|..-.||--. +   -..|++...++ +-+.+-+--+|- --.+|+++-+.
T Consensus       230 p~G~~e~----ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~V-~Sisa~~HKYGl~~~G~~~vl~r~  304 (491)
T KOG1383|consen  230 PTGEIED----VEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVPGV-TSISADGHKYGLAPAGSSWVLYRN  304 (491)
T ss_pred             Cccchhh----HHHHHHHHHHHhCCceeecccCccccccccccCccccccCCCCc-eeEeeccceeeeeecCcEEEEEcc
Confidence            6675555    8999999988 99999999998888432 2   11233333333 222222222221 11356776653


Q ss_pred             -HH-HHhhcc-------cccccCCCCc--HHHHHHHHHHHHhhchhh---HHHHHHHHHHHHHHHHHHHHHhCCCceeee
Q 011777          337 -EI-ANVMAQ-------KIQFNTFGGN--PVCSAGGLAVLRVIDKER---RQAHCADVGSHLLGRLRTLQERHDIIGDVR  402 (477)
Q Consensus       337 -~~-~~~~~~-------~~~~~t~~~~--~~~~aaa~a~l~~l~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~  402 (477)
                       ++ .+++..       ...+.|.+++  ..-.++..+++=.+..++   ..+++.+....++++++++. +..    +-
T Consensus       305 k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~-~i~----i~  379 (491)
T KOG1383|consen  305 KELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENIK-GIK----IV  379 (491)
T ss_pred             cccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccc-cce----ec
Confidence             32 222211       0111222222  233344445554444444   34566667778888887742 111    12


Q ss_pred             ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHH-HHHHHHHHHHHHhh
Q 011777          403 GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDD-ADFLVDALDYSMSK  476 (477)
Q Consensus       403 g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~-i~~~l~~l~~~l~~  476 (477)
                      |...+..+-+.+       .....-++.+.|.+.|-.+..- .+...+.++.-..+..++ .|+++.-+++++++
T Consensus       380 gkp~vs~~~~~s-------~~~~i~elsd~l~~~GW~lnal-q~P~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~e  446 (491)
T KOG1383|consen  380 GKPLVSFILFGS-------NDVNIFELSDLLRKKGWILNAL-QFPAAIHICVTRVHAREDVADRFVADIRKVVEE  446 (491)
T ss_pred             CCCcEEEEEccC-------CccchhhhhHHHHhcCcCcccc-CCCCceEEEEEeeeccHHHHHHHHHHHHHHHHH
Confidence            222222222211       1122446788999999887543 223344444445555555 57777777777654

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=97.46  E-value=0.033  Score=53.92  Aligned_cols=210  Identities=17%  Similarity=0.131  Sum_probs=108.8

Q ss_pred             HHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcc-cCccCCCCCCccccccCCCcce
Q 011777          238 QDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQ-TGFGRTGSHYWGFETQGVIPDI  316 (477)
Q Consensus       238 ~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-~gfgr~G~~~~~~~~~gv~pDi  316 (477)
                      +.||+.-..   -+.+.+|+-.      ..-+..-...+++++|++.|++|.+|=++ +|+--.|.-...|++    .||
T Consensus       179 D~Le~~A~~---frPk~iiaG~------SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey----~Di  245 (477)
T KOG2467|consen  179 DKLEKTATL---FRPKLIIAGT------SAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEY----CDI  245 (477)
T ss_pred             HHHHHHHHh---cCCcEEEecc------ccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccc----cce
Confidence            566654432   2445666522      12222233689999999999999999764 344333312223343    367


Q ss_pred             eee--cccccCccceEEEEeCHHHHHh-----------hc--------ccccccCCCCcHHHHHHHHHHHHhhch---hh
Q 011777          317 VTM--AKGIGNGLPLGAVVTTPEIANV-----------MA--------QKIQFNTFGGNPVCSAGGLAVLRVIDK---ER  372 (477)
Q Consensus       317 vt~--sK~lg~G~pig~v~~~~~~~~~-----------~~--------~~~~~~t~~~~~~~~aaa~a~l~~l~~---~~  372 (477)
                      ||.  -|++-| .|-|.+..++.+...           +.        +..+++.++....+.|.   +|+....   ..
T Consensus       246 VTTTTHKsLRG-PRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAv---ALkQa~tpefk~  321 (477)
T KOG2467|consen  246 VTTTTHKSLRG-PRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAV---ALKQAMTPEFKE  321 (477)
T ss_pred             eeccccccccC-CcceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHH---HHHhhCCHHHHH
Confidence            754  488875 344666665532211           11        11233333333333333   3443333   34


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeecc-------CC
Q 011777          373 RQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG-------GL  445 (477)
Q Consensus       373 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-------~~  445 (477)
                      .++++.++.+.|.++|.+.  .+.++..-. ...++.+++....    -++...+.+.+.+   +|.+...       ..
T Consensus       322 Yq~qV~~Nakala~~l~~~--Gy~lvtgGT-DnHlvLvDLr~~G----~dGarvE~vle~~---~I~~NKNtvpGD~Sal  391 (477)
T KOG2467|consen  322 YQKQVLKNAKALASALISR--GYKLVTGGT-DNHLVLVDLRPKG----VDGARVEKVLELC---HIALNKNTVPGDKSAL  391 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHc--CceEecCCc-cceEEEEeccccC----CchHHHHHHHHHh---hhhhcCCcCCCCcccc
Confidence            5677777788888877665  333332211 2345566664321    2333444444433   3333211       12


Q ss_pred             CCCEEEEeCCCCC----cHHHHHHHHHHHHHHH
Q 011777          446 HGNVFRIKPPMCF----TKDDADFLVDALDYSM  474 (477)
Q Consensus       446 ~~~~iRi~p~~~~----t~e~i~~~l~~l~~~l  474 (477)
                      ..+-||+..|..+    .++|.++..+-|++++
T Consensus       392 ~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av  424 (477)
T KOG2467|consen  392 SPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAV  424 (477)
T ss_pred             CCCceeccchhhcccCccHHHHHHHHHHHHHHH
Confidence            2345899776655    4678888877777665

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=97.41  E-value=0.014  Score=58.18  Aligned_cols=221  Identities=20%  Similarity=0.139  Sum_probs=110.6

Q ss_pred             HHHHHHHhcc-CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc-----C
Q 011777          238 QDLQDHIDFG-TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ-----G  311 (477)
Q Consensus       238 ~~le~~i~~~-~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~-----g  311 (477)
                      +.|+++|++. ..+-+-.+++-+ .|++|..  .-+.|.+|..+|+++|++|++|.+|+|-      .+.++.+     |
T Consensus       220 ~~L~~AIe~D~arGlIPf~v~at-~GTT~~c--a~D~l~elg~Vc~~~glWLHVDAAYAGs------a~iCpE~r~l~rG  290 (511)
T KOG0628|consen  220 DTLRKAIEEDIARGLIPFFVCAT-LGTTSSC--AFDELEELGPVCREEGLWLHVDAAYAGS------AFICPEFRYLMRG  290 (511)
T ss_pred             HHHHHHHHHHHhCCCccEEEEEe-ecCcccc--ccccHHHhcchhhhcCEEEEeehhhccc------cccCHHHHHHhhc
Confidence            6677777632 234455555544 4666543  3455999999999999999999999853      2222211     2


Q ss_pred             C-Ccceee--eccccc-----------CccceE-EEEeCHHHHHhhcccc-cccCCCCcHHH----HHHHHHHHHhhchh
Q 011777          312 V-IPDIVT--MAKGIG-----------NGLPLG-AVVTTPEIANVMAQKI-QFNTFGGNPVC----SAGGLAVLRVIDKE  371 (477)
Q Consensus       312 v-~pDivt--~sK~lg-----------~G~pig-~v~~~~~~~~~~~~~~-~~~t~~~~~~~----~aaa~a~l~~l~~~  371 (477)
                      + ..|-..  .+|.+-           .|..+. +.-+.+...+.-.... .-.-++.=|++    ..=..-+++.+.-+
T Consensus       291 ie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve  370 (511)
T KOG0628|consen  291 IEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVE  370 (511)
T ss_pred             chhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcchhhccCCCccccccccccchhhHHHHHHHHHHhHH
Confidence            2 123221  234332           232222 2222222221111100 00111111222    22222345555557


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCc--eeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcC-ceeeccCCCCC
Q 011777          372 RRQAHCADVGSHLLGRLRTLQERHDII--GDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELG-VLVGKGGLHGN  448 (477)
Q Consensus       372 ~~~~~~~~~~~~l~~~L~~l~~~~~~~--~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~G-v~v~~~~~~~~  448 (477)
                      ++++++++..+ |.+.+.++..+-+..  ...+-.|+. .+.+..       .......+.+++...| |.+.+....+.
T Consensus       371 ~lq~~iR~h~~-La~~fe~lv~~d~~FE~~~~~~lgLv-cFRlk~-------~N~~ne~Ll~~in~~g~i~l~~~~l~gk  441 (511)
T KOG0628|consen  371 NLQNYIREHVR-LAKEFETLVRADPRFEIVNKRILGLV-CFRLKG-------DNEINEALLNRLNSSGRIHLVPASLHGK  441 (511)
T ss_pred             HHHHHHHHHHH-HHHHHHHHhhcCCcceeeccccccee-EEeecC-------CcHHHHHHHHHHHhcCcEEEEEeeecce
Confidence            77777776543 334444443332221  222223332 333322       1234566777776655 77777654443


Q ss_pred             -EEEEeCCCC-CcHHHHHHHHHHHHHHHhh
Q 011777          449 -VFRIKPPMC-FTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       449 -~iRi~p~~~-~t~e~i~~~l~~l~~~l~~  476 (477)
                       +|||....- .+++||++.-+.|.+....
T Consensus       442 ~vlRf~V~s~~t~~~di~~a~~~I~~~a~~  471 (511)
T KOG0628|consen  442 FVLRFAVCSPLTNESDIDEAWKIIFEAADE  471 (511)
T ss_pred             EEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Confidence             578865544 4678899998888776543

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=96.98  E-value=0.012  Score=56.34  Aligned_cols=215  Identities=20%  Similarity=0.235  Sum_probs=108.5

Q ss_pred             ceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccC-ChHHHHHHHHHHhhC-CCC--
Q 011777           79 PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL-HHAIADFAEALASKM-PGN--  154 (477)
Q Consensus        79 p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~-~~~~~~l~~~La~~~-~~~--  154 (477)
                      |.-+-=|-|.| .|.+|+.|+              -|.|++|=++.+....  .-.|. -....++.+.-+++. +.+  
T Consensus        52 ~~KiNLgvGaY-Rdd~gKp~v--------------L~~VrkAE~ql~~~~l--dKEYlpI~Gl~eF~k~sakLa~G~~s~  114 (427)
T KOG1411|consen   52 PKKINLGVGAY-RDDNGKPYV--------------LPSVRKAEQQLASLSL--DKEYLPITGLAEFNKLSAKLALGDNSP  114 (427)
T ss_pred             cceeeecccce-ecCCCCeee--------------eHHHHHHHHHHhhhcc--cchhccccchHHHHHHHHHHhhcCCch
Confidence            44455577777 477888774              2556666544333110  01121 112334444433332 111  


Q ss_pred             ---CCEEEE--eCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCC
Q 011777          155 ---LKVVYF--VNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSF  229 (477)
Q Consensus       155 ---~~~v~~--~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (477)
                         .+++.+  |-|||-|+-.+-.....+-+...|.+.++++-.+.. .....+.          .+....+.++..+.+
T Consensus       115 ~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~-if~~ag~----------~~~~yrYyd~~t~gl  183 (427)
T KOG1411|consen  115 VIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKN-IFKDAGL----------PVKFYRYYDPKTRGL  183 (427)
T ss_pred             hhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccccCc-cccccCc----------ceeeeeecccccccc
Confidence               234433  447888877766654444456678888887632211 1111111          111111111111111


Q ss_pred             CCCHHHHHHHHHHHHhccCCCCeeEEEecc-cCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC---CCc
Q 011777          230 GSDAARYAQDLQDHIDFGTSGKVAGFIAET-IQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS---HYW  305 (477)
Q Consensus       230 ~~~~~~~~~~le~~i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~---~~~  305 (477)
                        |....++++.+    ..++.  .|++-. -++++| +-|+++.+++|.++.++.+.+-++|-+|.||. .|+   ..+
T Consensus       184 --d~~g~ledl~~----~p~gs--~ilLhaCaHNPTG-vDPt~eqw~ki~~~~~~k~~~pffDmAYQGfa-SG~~d~DA~  253 (427)
T KOG1411|consen  184 --DFKGMLEDLGE----APEGS--IILLHACAHNPTG-VDPTKEQWEKISDLIKEKNLLPFFDMAYQGFA-SGDLDKDAQ  253 (427)
T ss_pred             --chHHHHHHHhc----CCCCc--EEEeehhhcCCCC-CCccHHHHHHHHHHhhhccccchhhhhhcccc-cCCchhhHH
Confidence              11111223222    21222  333333 555666 78899999999999999999999999999994 331   111


Q ss_pred             ccccc---CCCccee--eecccccC-ccceEEE
Q 011777          306 GFETQ---GVIPDIV--TMAKGIGN-GLPLGAV  332 (477)
Q Consensus       306 ~~~~~---gv~pDiv--t~sK~lg~-G~pig~v  332 (477)
                      +..++   |.. -++  +++|.+|- |-|+|++
T Consensus       254 avR~F~~~g~~-~~laQSyAKNMGLYgERvGa~  285 (427)
T KOG1411|consen  254 AVRLFVEDGHE-ILLAQSYAKNMGLYGERVGAL  285 (427)
T ss_pred             HHHHHHHcCCc-eEeehhhhhhcchhhhcccee
Confidence            11111   221 122  58899994 7788865

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=96.29  E-value=0.099  Score=49.45  Aligned_cols=211  Identities=16%  Similarity=0.130  Sum_probs=116.5

Q ss_pred             CCHHHHHHHHHHHhhcccc---ccc-cCChHHHHHHHHHHhhCCCCCC--EEEEeCChHHHHHHHHHHHHhccCCceEEE
Q 011777          113 CHPDVLNAIFEQSKLLQHA---TTI-YLHHAIADFAEALASKMPGNLK--VVYFVNSGTEANELAMLMARLSTGNLGMIA  186 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~---~~~-~~~~~~~~l~~~La~~~~~~~~--~v~~~~sGseA~~~Al~~ar~~~~~~~ii~  186 (477)
                      |..+|.+|.++.--.-.|.   +.. |.+-.+..|.+-.++.++....  +..| -|||.|+..|+.-.+.  +++.++.
T Consensus        36 Nq~kVL~AF~~~rvs~~hf~~stGYGydD~GRdtLe~vyA~vf~aE~a~VRpq~-isGTHAI~~aLfg~LR--pgDell~  112 (416)
T COG4100          36 NQKKVLEAFRHHRVSESHFTGSTGYGYDDLGRDTLERVYAQVFGAEAALVRPQI-ISGTHAIACALFGILR--PGDELLY  112 (416)
T ss_pred             HHHHHHHHHHhcccchhccCCCCCCCccccchhHHHHHHHHHhccccceeeeee-ecchhHHHHHHHhccC--CCCeEEE
Confidence            4456677665532211221   122 2334477888888888865322  2323 4799999999875543  6777877


Q ss_pred             EccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCe
Q 011777          187 LRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGA  266 (477)
Q Consensus       187 ~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~  266 (477)
                      ..|.=.-.....+.+.+...-  .....++..-.+|....+..+      .+.++..++    ++++.|.+.-.-|-.--
T Consensus       113 i~G~PYDTLeevIG~rg~~~g--SL~dfgi~Y~~v~Lt~~gkiD------~~~v~~~i~----~~tkli~IQRS~GY~~R  180 (416)
T COG4100         113 ITGSPYDTLEEVIGLRGEGQG--SLKDFGIKYKAVPLTADGKID------IQAVKTAIS----DRTKLIGIQRSKGYAWR  180 (416)
T ss_pred             ecCCcchhHHHHhccCCCCcc--cHHHhCcceeecccccCCccc------HHHHHHhcC----ccceEEEEEeccCcCCC
Confidence            766443333333333332110  011112222111111111111      356666665    57788876553332211


Q ss_pred             eeCCchhHHHHHHHHHHh--CcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccCcc--ceEEEEeCHHHHH
Q 011777          267 VELAPGYLKLVYDIVRKA--GGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGNGL--PLGAVVTTPEIAN  340 (477)
Q Consensus       267 ~~~~~~~l~~l~~l~~~~--gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G~--pig~v~~~~~~~~  340 (477)
                      -..+-+.++++.++.|+-  ++++.+|..|..|--+-      +-..+-.|++  ++=|..|||+  --||+.+++++.+
T Consensus       181 pS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~------EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve  254 (416)
T COG4100         181 PSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEK------EPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVE  254 (416)
T ss_pred             CcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhcc------CccccchhhhccceeeCCCCceeeccceeechHHHHH
Confidence            112335567777777764  78999999998774322      2234556777  4669999885  3479999999988


Q ss_pred             hhcc
Q 011777          341 VMAQ  344 (477)
Q Consensus       341 ~~~~  344 (477)
                      ....
T Consensus       255 ~~~y  258 (416)
T COG4100         255 AAAY  258 (416)
T ss_pred             hhce
Confidence            7653

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=96.15  E-value=0.025  Score=49.06  Aligned_cols=73  Identities=12%  Similarity=0.069  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCC----CCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCc
Q 011777          116 DVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMP----GNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAY  191 (477)
Q Consensus       116 ~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~----~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~y  191 (477)
                      .+++++.+ +.  .+....+..+.++.+++.+.+..+    .+.++|++|+|+++|++.+++....  +++.|++.++.|
T Consensus        77 ~i~~~~~~-~a--~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~d--pGD~VlVp~P~Y  151 (153)
T PLN02994         77 GTIDSFKD-IA--LFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIAD--PGDAFLVPTPYY  151 (153)
T ss_pred             HHHHHHHH-Hh--cCCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcC--CCCEEEEeCCCC
Confidence            44555544 21  133333456778888888877654    3567899999999999998886643  678899999999


Q ss_pred             cC
Q 011777          192 HG  193 (477)
Q Consensus       192 hG  193 (477)
                      +|
T Consensus       152 ~~  153 (153)
T PLN02994        152 AA  153 (153)
T ss_pred             CC
Confidence            75

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=91.90  E-value=20  Score=38.16  Aligned_cols=44  Identities=9%  Similarity=0.087  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHH
Q 011777          426 TAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALD  471 (477)
Q Consensus       426 ~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~  471 (477)
                      .+++.....++++-++...  .+.|-++.--+.+++|+|.++..+.
T Consensus       435 ~~~~l~rA~~~~iNlr~~e--d~tigvslDETv~~~DvddLl~vf~  478 (1001)
T KOG2040|consen  435 AEEVLDRAAKRQINLRLVE--DGTIGVSLDETVTEKDVDDLLWVFN  478 (1001)
T ss_pred             HHHHHHHHHhhcCceEEee--cCceEEeecccccHHHHHHHHHHHc
Confidence            5677777778888776532  4667787777889999999998875

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=90.89  E-value=2  Score=40.07  Aligned_cols=55  Identities=11%  Similarity=0.007  Sum_probs=37.6

Q ss_pred             HHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc
Q 011777          237 AQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT  295 (477)
Q Consensus       237 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~  295 (477)
                      ++.+++.++..+++-+-+|...+.    -..+-.++-+++|..+|..|+++-|+..+|.
T Consensus       143 leav~~~iee~g~dcilci~stts----cfapr~pd~leaiaaica~~diphivnnayg  197 (432)
T KOG3843|consen  143 LEAVEAIIEELGEDCILCIHSTTS----CFAPRSPDNLEAIAAICAAHDIPHIVNNAYG  197 (432)
T ss_pred             HHHHHHHHHHhCCceEEEEeeccc----ccCCCCCchHHHHHHHHHccCchhhhccccc
Confidence            566777777554444444433221    1234466779999999999999999998763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	477
1z3z_A	431	The Crystal Structure Of A Dgd Mutant: Q52a Length		5e-51
1m0n_A	433	Structure Of Dialkylglycine Decarboxylase Complexed		8e-51
1d7r_A	433	Crystal Structure Of The Complex Of 2,2-Dialkylglyc		1e-50
1dgd_A	432	An Alkali Metal Ion Size-Dependent Switch In The Ac		1e-50
1vef_A	395	Acetylornithine Aminotransferase From Thermus Therm		3e-47
2e54_A	385	Crystal Structure Of Acetylornithine Aminotransfera		6e-45
1szk_A	426	The Structure Of Gamma-Aminobutyrate Aminotransfera		2e-44
1sf2_A	426	Structure Of E. Coli Gamma-Aminobutyrate Aminotrans		3e-44
1szu_A	426	The Structure Of Gamma-Aminobutyrate Aminotransfera		8e-44
1szs_A	426	The Structure Of Gamma-aminobutyrate Aminotransfera		2e-43
2ord_A	397	Crystal Structure Of Acetylornithine Aminotransfera		4e-43
2eh6_A	375	Crystal Structure Of Acetylornithine Aminotransfera		4e-42
3dxw_A	452	The Crystal Structure Of Alpha-Amino-Epsilon-Caprol		1e-41
2zuk_A	439	The Crystal Structure Of Alpha-Amino-Epsilon-Caprol		1e-41
4ffc_A	453	Crystal Structure Of A 4-Aminobutyrate Aminotransfe		4e-41
3n5m_A	452	Crystals Structure Of A Bacillus Anthracis Aminotra		4e-40
4adb_A	406	Structural And Functional Study Of Succinyl-ornithi		2e-38
3hmu_A	472	Crystal Structure Of A Class Iii Aminotransferase F		7e-37
2pb0_A	420	Structure Of Biosynthetic N-Acetylornithine Aminotr		1e-36
3q8n_A	453	Crystal Structure Of 4-Aminobutyrate Transaminase F		9e-36
4e3r_A	473	Plp-Bound Aminotransferase Mutant Crystal Structure		2e-35
3r4t_A	467	Crystal Structure Of 4-Aminobutyrate Aminotransfera		2e-35
3fcr_A	459	Crystal Structure Of Putative Aminotransferase (Yp_		3e-35
3oks_A	451	Crystal Structure Of 4-Aminobutyrate Transaminase F		4e-35
3nui_A	478	Crystal Structure Of Omega-Transferase From Vibrio		4e-35
1z7d_A	433	Ornithine Aminotransferase Py00104 From Plasmodium		8e-34
4atp_A	456	Structure Of Gaba-Transaminase A1r958 From Arthroba		3e-33
3gju_A	459	Crystal Structure Of A Putative Aminotransferase (M		7e-33
4e3q_A	473	Pmp-Bound Form Of Aminotransferase Crystal Structur		1e-32
4grx_A	465	Structure Of An Omega-Aminotransferase From Paracoc		1e-32
2byl_A	439	Structure Of Ornithine Aminotransferase Triple Muta		1e-32
2byj_A	439	Ornithine Aminotransferase Mutant Y85i Length = 439		2e-32
2eo5_A	419	Crystal Structure Of 4-Aminobutyrate Aminotransfera		7e-32
1oat_A	439	Ornithine Aminotransferase Length = 439		8e-32
4a6r_A	459	Crystal Structure Of The Omega Transaminase From Ch		8e-32
2can_A	402	Human Ornithine Aminotransferase Complexed With L-C		8e-32
3lg0_A	422	Structure Of Plasmodium Falciparum Ornithine Delta-		1e-31
3ruy_A	392	Crystal Structure Of The Ornithine-Oxo Acid Transam		3e-31
3i4j_A	430	Crystal Structure Of Aminotransferase, Class Iii Fr		5e-30
3i5t_A	476	Crystal Structure Of Aminotransferase Prk07036 From		8e-29
3nx3_A	395	Crystal Structure Of Acetylornithine Aminotransfera		2e-28
3du4_A	448	Crystal Structure Of 7-Keto-8-Aminopelargonic Acid		4e-28
3dod_A	448	Crystal Structure Of Plp Bound 7,8-diaminopelargoni		6e-28
3a8u_X	449	Crystal Structure Of Omega-Amino Acid:pyruvate Amin		2e-25
3l44_A	434	Crystal Structure Of Bacillus Anthracis Heml-1, Glu		9e-24
1dty_A	429	Crystal Structure Of Adenosylmethionine-8-Amino-7-O		1e-21
1mgv_A	429	Crystal Structure Of The R391a Mutant Of 7,8-Diamin		2e-21
1qj3_A	429	Crystal Structure Of 7,8-Diaminopelargonic Acid Syn		2e-21
1s08_A	429	Crystal Structure Of The D147n Mutant Of 7,8- Diami		8e-21
1s0a_A	429	Crystal Structure Of The Y17f Mutant Of 7,8- Diamin		1e-20
2epj_A	434	Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A		1e-20
1s07_A	429	Crystal Structure Of The R253a Mutant Of 7,8-Diamin		1e-20
1s06_A	429	Crystal Structure Of The R253k Mutant Of 7,8- Diami		3e-20
1s09_A	429	Crystal Structure Of The Y144f Mutant Of 7,8- Diami		3e-20
2gsa_A	432	Crystal Structure Of Glutamate-1-Semialdehyde Amino		4e-20
3fq7_A	427	Gabaculine Complex Of Gsam Length = 427		5e-20
2hoy_A	432	Inter-Subunit Signaling In Gsam Length = 432		6e-20
3fqa_A	427	Gabaculien Complex Of Gabaculine Resistant Gsam Ver		8e-20
2e7u_A	424	Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A		8e-20
3fq8_A	427	M248i Mutant Of Gsam Length = 427		9e-20
3bs8_A	438	Crystal Structure Of Glutamate 1-Semialdehyde Amino		9e-19
3k28_A	429	Crystal Structure Of A Glutamate-1-Semialdehyde Ami		3e-18
3lv2_A	462	Crystal Structure Of Mycobacterium Tuberculosis 7,8		2e-17
3bv0_A	437	Crystal Structure Of Plp Bound 7,8-Diaminopelargoni		2e-17
2cfb_A	411	Glutamate-1-Semialdehyde 2,1-Aminomutase From Therm		2e-17
3tft_A	457	Crystal Structure Of 7,8-Diaminopelargonic Acid Syn		2e-17
2jjh_A	449	E243 Mutant Of M. Tuberculosis Rv3290c Length = 449		3e-17
2cin_A	449	Lysine Aminotransferase From M. Tuberculosis In The		5e-17
1ohv_A	472	4-aminobutyrate-aminotransferase From Pig Length =		7e-17
2jje_A	449	Crystal Structure Of T330s Mutant Of Rv3290c From M		1e-16
2jjf_A	449	N328a Mutant Of M. Tuberculosis Rv3290c Length = 44		2e-16
4ao9_A	454	Biochemical Properties And Crystal Structure Of A N		3e-16
4e77_A	429	2.0a Crystal Structure Of A Glutamate-1-Semialdehyd		1e-15
2yku_A	465	Structural Determinants Of The Beta-Selectivity Of		4e-14
2cy8_A	453	Crystal Structure Of D-Phenylglycine Aminotransfera		3e-11
4a0g_A	831	Structure Of Bifunctional Dapa Aminotransferase-Dtb		6e-05
4a0f_A	831	Structure Of Selenomethionine Substituted Bifunctio		3e-04

>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a Length = 431

Iteration: 1
 Score =  198 bits (504), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 133/409 (32%), Positives = 207/409 (50%), Gaps = 12/409 (2%)
Query: 78  KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH 137
           +P+ I   K  +++D +GR  LD  +G ++   GHCHP++++ I E +  L H  +  L 
Sbjct: 23  EPMIIERAKGSFVYDADGRAILDFTSGAMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLS 82
Query: 138 HAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG--GS 195
             + D A  LA+  P  L     +++G E+NE A+ MA+L TG   ++    ++HG  G+
Sbjct: 83  RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGA 142
Query: 196 SGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAA-RYAQDLQ---DHIDFGTSGK 251
           + +   +A      P   G    +  P  Y   F  + A  Y  +L    D ID  +SG 
Sbjct: 143 AASATYSAGRKGVGPAAVGSF-AIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGN 201
Query: 252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQG 311
           +A FIAE I   GG +EL  GY+  +       G + I DE QTG GRTG+ +   +  G
Sbjct: 202 LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDG 260
Query: 312 VIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQ--KIQFNTFGGNPVCSAGGLAVLRVID 369
           V PDI+T++K +G GLPL A+VT+  I     +   + + T   +P+ +A GL VL V+ 
Sbjct: 261 VTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ 320
Query: 370 KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVL 429
           ++   A    +G  L   L  L ER D IGDVRGRGL++G+E+V DR+ K PA    A +
Sbjct: 321 RDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKI 380
Query: 430 FEKLREXXXXXXXXXX--XXXXFRIKPPMCFTKDDADFLVDALDYSMSK 476
             +                   FRI PP+  ++D+ D  +  L  ++ +
Sbjct: 381 TRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 429

>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate Length = 433

Iteration: 1
 Score =  197 bits (502), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 133/409 (32%), Positives = 207/409 (50%), Gaps = 12/409 (2%)
Query: 78  KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH 137
           +P+ I   K  +++D +GR  LD  +G ++   GHCHP++++ I E +  L H  +  L 
Sbjct: 25  EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLS 84
Query: 138 HAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG--GS 195
             + D A  LA+  P  L     +++G E+NE A+ MA+L TG   ++    ++HG  G+
Sbjct: 85  RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGA 144
Query: 196 SGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAA-RYAQDLQ---DHIDFGTSGK 251
           + +   +A      P   G    +  P  Y   F  + A  Y  +L    D ID  +SG 
Sbjct: 145 AASATYSAGRKGVGPAAVGSF-AIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGN 203
Query: 252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQG 311
           +A FIAE I   GG +EL  GY+  +       G + I DE QTG GRTG+ +   +  G
Sbjct: 204 LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDG 262
Query: 312 VIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQ--KIQFNTFGGNPVCSAGGLAVLRVID 369
           V PDI+T++K +G GLPL A+VT+  I     +   + + T   +P+ +A GL VL V+ 
Sbjct: 263 VTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ 322
Query: 370 KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVL 429
           ++   A    +G  L   L  L ER D IGDVRGRGL++G+E+V DR+ K PA    A +
Sbjct: 323 RDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKI 382
Query: 430 FEKLREXXXXXXXXXX--XXXXFRIKPPMCFTKDDADFLVDALDYSMSK 476
             +                   FRI PP+  ++D+ D  +  L  ++ +
Sbjct: 383 TRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 431

>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decarboxylase With 5pa Length = 433

Iteration: 1
 Score =  197 bits (501), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 133/409 (32%), Positives = 207/409 (50%), Gaps = 12/409 (2%)
Query: 78  KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH 137
           +P+ I   K  +++D +GR  LD  +G ++   GHCHP++++ I E +  L H  +  L 
Sbjct: 25  EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSGMLS 84
Query: 138 HAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG--GS 195
             + D A  LA+  P  L     +++G E+NE A+ MA+L TG   ++    ++HG  G+
Sbjct: 85  RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGA 144
Query: 196 SGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAA-RYAQDLQ---DHIDFGTSGK 251
           + +   +A      P   G    +  P  Y   F  + A  Y  +L    D ID  +SG 
Sbjct: 145 AASATYSAGRKGVGPAAVGSF-AIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGN 203
Query: 252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQG 311
           +A FIAE I   GG +EL  GY+  +       G + I DE QTG GRTG+ +   +  G
Sbjct: 204 LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDG 262
Query: 312 VIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQ--KIQFNTFGGNPVCSAGGLAVLRVID 369
           V PDI+T++K +G GLPL A+VT+  I     +   + + T   +P+ +A GL VL V+ 
Sbjct: 263 VTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ 322
Query: 370 KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVL 429
           ++   A    +G  L   L  L ER D IGDVRGRGL++G+E+V DR+ K PA    A +
Sbjct: 323 RDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKI 382
Query: 430 FEKLREXXXXXXXXXX--XXXXFRIKPPMCFTKDDADFLVDALDYSMSK 476
             +                   FRI PP+  ++D+ D  +  L  ++ +
Sbjct: 383 TRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 431

>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active Site Structure Of Dialkylglycine Decarboxylase Length = 432

Iteration: 1
 Score =  197 bits (501), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 133/409 (32%), Positives = 207/409 (50%), Gaps = 12/409 (2%)
Query: 78  KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH 137
           +P+ I   K  +++D +GR  LD  +G ++   GHCHP++++ I E +  L H  +  L 
Sbjct: 24  EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSGMLS 83
Query: 138 HAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG--GS 195
             + D A  LA+  P  L     +++G E+NE A+ MA+L TG   ++    ++HG  G+
Sbjct: 84  RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGA 143
Query: 196 SGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAA-RYAQDLQ---DHIDFGTSGK 251
           + +   +A      P   G    +  P  Y   F  + A  Y  +L    D ID  +SG 
Sbjct: 144 AASATYSAGRKGVGPAAVGSF-AIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGN 202
Query: 252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQG 311
           +A FIAE I   GG +EL  GY+  +       G + I DE QTG GRTG+ +   +  G
Sbjct: 203 LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDG 261
Query: 312 VIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQ--KIQFNTFGGNPVCSAGGLAVLRVID 369
           V PDI+T++K +G GLPL A+VT+  I     +   + + T   +P+ +A GL VL V+ 
Sbjct: 262 VTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ 321
Query: 370 KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVL 429
           ++   A    +G  L   L  L ER D IGDVRGRGL++G+E+V DR+ K PA    A +
Sbjct: 322 RDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKI 381
Query: 430 FEKLREXXXXXXXXXX--XXXXFRIKPPMCFTKDDADFLVDALDYSMSK 476
             +                   FRI PP+  ++D+ D  +  L  ++ +
Sbjct: 382 TRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 430

>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus Hb8 Length = 395

Iteration: 1
 Score =  186 bits (472), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 126/398 (31%), Positives = 192/398 (48%), Gaps = 33/398 (8%)
Query: 75  YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI 134
           Y +  L IV G+   ++D  G  Y+D   G    + GH +P+V+ A+  Q++ L      
Sbjct: 24  YNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQT 83
Query: 135 YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGG 194
                  +F   L + +P  L  V+ VNSGTEANE A+  AR  TG    +A    + G 
Sbjct: 84  LPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGR 143
Query: 195 SSGTIGLTALNTW--KYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKV 252
           + G++ +T    W  KY  P   +   V   PY+           + L+  +D  T    
Sbjct: 144 TMGSLSVT----WEPKYREPFLPLVEPVEFIPYND---------VEALKRAVDEET---- 186
Query: 253 AGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV 312
           A  I E +QG GG     P +L+   +I ++ G + I DE+QTG GRTG  +  FE  G+
Sbjct: 187 AAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF-AFEHFGI 245
Query: 313 IPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKER 372
           +PDI+T+AK +G G+PLG  V   E+A  M +     TFGGNP+  A G+A +R +++ R
Sbjct: 246 VPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTR 305
Query: 373 RQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEK 432
                A++G   + +LR +      I +VRG GLMVG+EL          K + A    +
Sbjct: 306 LWERAAELGPWFMEKLRAIPSPK--IREVRGMGLMVGLEL----------KEKAAPYIAR 353
Query: 433 LREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDAL 470
           L E               R  PP+   K+D + +V+A+
Sbjct: 354 L-EKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAV 390

>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Thermotoga Maritima Length = 385

Iteration: 1
 Score =  178 bits (452), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 123/401 (30%), Positives = 193/401 (48%), Gaps = 34/401 (8%)
Query: 75  YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI 134
           Y + P   V GK  +++DE G  YLD  +GI     GH HP ++ AI +Q++ L H + +
Sbjct: 7   YSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNL 66
Query: 135 YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALR-----N 189
           + +    + AE L+    G    V+F N+GTEANE A+ +AR           R     N
Sbjct: 67  FWNRPQMELAELLSKNTFGG--KVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHN 124
Query: 190 AYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS 249
           ++HG + G+  LTA    KY  P          +P    F        +DL+  +    S
Sbjct: 125 SFHGRTLGS--LTATGQPKYQKPF---------EPLVPGFEYFEFNNVEDLRRKM----S 169
Query: 250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET 309
             V     E IQG  G V     +L+    +  +   + + DEVQ G GRTG  +  ++ 
Sbjct: 170 EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLF-AYQK 228
Query: 310 QGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID 369
            GV+PD++T AKG+G G+P+GAV+   E ANV+       TFGGNP+    G+ V++ + 
Sbjct: 229 YGVVPDVLTTAKGLGGGVPIGAVIVN-ERANVLEPGDHGTTFGGNPLACRAGVTVIKELT 287
Query: 370 KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVL 429
           KE       + G++L+ +L+ ++E +D++ DVRG GLM+G++    R+E +  +  T   
Sbjct: 288 KEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQF---REEVSNREVATKCF 344
Query: 430 FEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDAL 470
             KL                 R  PP+     + D  V+ L
Sbjct: 345 ENKL-------LVVPAGNNTIRFLPPLTVEYGEIDLAVETL 378

>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: E211s Length = 426

Iteration: 1
 Score =  176 bits (446), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/415 (30%), Positives = 194/415 (46%), Gaps = 12/415 (2%)
Query: 56  SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHP 115
           S  ++ Q+R Q +   +   +  P+     +   ++D  GR YLD   GI  ++ GH HP
Sbjct: 3   SNKELMQRRSQAIPRGVGQIH--PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHP 60
Query: 116 DVLNAIFEQSKLLQHAT-TIYLHHAIADFAEALASKMPGNL-KVVYFVNSGTEANELAML 173
            V+ A+  Q K L H    +  +    +  E +  K+PG+  K    V +G+EA E A+ 
Sbjct: 61  KVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVK 120
Query: 174 MARLSTGNLGMIALRNAYHGGSSGTIGLTA-LNTWK--YPIPQGEIHHVVNPDPYHGSFG 230
           +AR +T   G IA   AYHG +  T+ LT  +N +     +  G ++  + P P HG   
Sbjct: 121 IARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISE 180
Query: 231 SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA 290
            DA   A   +   +      +A  + E +QG GG    +P +++ +  +  + G + IA
Sbjct: 181 DDA--IASIHRIFKNDAAPEDIAAIVIEPVQGSGGFYASSPAFMQRLRALCDEHGIMLIA 238
Query: 291 DEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNT 350
           DEVQ+G GRTG+  +  E  GV PD+ T AK I  G PL  V    E+ + +A      T
Sbjct: 239 DEVQSGAGRTGT-LFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGT 297
Query: 351 FGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM 410
           + GNP+     L VL+V ++E       D+G  L   L  + E+H  IGDVRG G M+ +
Sbjct: 298 YAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAI 357
Query: 411 ELVTDRKEKTPAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADF 465
           EL  D     P    TA +  + R+               RI  P+  T +DA  
Sbjct: 358 ELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPL--TIEDAQI 410

>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase Length = 426

Iteration: 1
 Score =  176 bits (445), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 126/415 (30%), Positives = 194/415 (46%), Gaps = 12/415 (2%)
Query: 56  SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHP 115
           S  ++ Q+R Q +   +   +  P+     +   ++D  GR YLD   GI  ++ GH HP
Sbjct: 3   SNKELMQRRSQAIPRGVGQIH--PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHP 60
Query: 116 DVLNAIFEQSKLLQHAT-TIYLHHAIADFAEALASKMPGNL-KVVYFVNSGTEANELAML 173
            V+ A+  Q K L H    +  +    +  E +  K+PG+  K    V +G+EA E A+ 
Sbjct: 61  KVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVK 120
Query: 174 MARLSTGNLGMIALRNAYHGGSSGTIGLTA-LNTWK--YPIPQGEIHHVVNPDPYHGSFG 230
           +AR +T   G IA   AYHG +  T+ LT  +N +     +  G ++  + P P HG   
Sbjct: 121 IARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISE 180
Query: 231 SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA 290
            DA   A   +   +      +A  + E +QG GG    +P +++ +  +  + G + IA
Sbjct: 181 DDA--IASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIA 238
Query: 291 DEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNT 350
           DEVQ+G GRTG+  +  E  GV PD+ T AK I  G PL  V    E+ + +A      T
Sbjct: 239 DEVQSGAGRTGT-LFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGT 297
Query: 351 FGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM 410
           + GNP+     L VL+V ++E       D+G  L   L  + E+H  IGDVRG G M+ +
Sbjct: 298 YAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAI 357
Query: 411 ELVTDRKEKTPAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADF 465
           EL  D     P    TA +  + R+               RI  P+  T +DA  
Sbjct: 358 ELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPL--TIEDAQI 410

>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: V241a Length = 426

Iteration: 1
 Score =  174 bits (442), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 125/415 (30%), Positives = 193/415 (46%), Gaps = 12/415 (2%)
Query: 56  SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHP 115
           S  ++ Q+R Q +   +   +  P+     +   ++D  GR YLD   GI  ++ GH HP
Sbjct: 3   SNKELMQRRSQAIPRGVGQIH--PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHP 60
Query: 116 DVLNAIFEQSKLLQHAT-TIYLHHAIADFAEALASKMPGNL-KVVYFVNSGTEANELAML 173
            V+ A+  Q K L H    +  +    +  E +  K+PG+  K    V +G+EA E A+ 
Sbjct: 61  KVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVK 120
Query: 174 MARLSTGNLGMIALRNAYHGGSSGTIGLTA-LNTWK--YPIPQGEIHHVVNPDPYHGSFG 230
           +AR +T   G IA   AYHG +  T+ LT  +N +     +  G ++  + P P HG   
Sbjct: 121 IARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISE 180
Query: 231 SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA 290
            DA   A   +   +      +A  + E +QG GG    +P +++ +  +  + G + IA
Sbjct: 181 DDA--IASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIA 238
Query: 291 DEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNT 350
           DE Q+G GRTG+  +  E  GV PD+ T AK I  G PL  V    E+ + +A      T
Sbjct: 239 DEAQSGAGRTGT-LFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGT 297
Query: 351 FGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM 410
           + GNP+     L VL+V ++E       D+G  L   L  + E+H  IGDVRG G M+ +
Sbjct: 298 YAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAI 357
Query: 411 ELVTDRKEKTPAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADF 465
           EL  D     P    TA +  + R+               RI  P+  T +DA  
Sbjct: 358 ELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPL--TIEDAQI 410

>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase Mutant: I50q Length = 426

Iteration: 1
 Score =  173 bits (438), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/415 (30%), Positives = 193/415 (46%), Gaps = 12/415 (2%)
Query: 56  SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHP 115
           S  ++ Q+R Q +   +   +  P+     +   ++D  GR YLD   G   ++ GH HP
Sbjct: 3   SNKELMQRRSQAIPRGVGQIH--PIFADRAENCRVWDVEGREYLDFAGGQAVLNTGHLHP 60
Query: 116 DVLNAIFEQSKLLQHAT-TIYLHHAIADFAEALASKMPGNL-KVVYFVNSGTEANELAML 173
            V+ A+  Q K L H    +  +    +  E +  K+PG+  K    V +G+EA E A+ 
Sbjct: 61  KVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVK 120
Query: 174 MARLSTGNLGMIALRNAYHGGSSGTIGLTA-LNTWK--YPIPQGEIHHVVNPDPYHGSFG 230
           +AR +T   G IA   AYHG +  T+ LT  +N +     +  G ++  + P P HG   
Sbjct: 121 IARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISE 180
Query: 231 SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA 290
            DA   A   +   +      +A  + E +QG GG    +P +++ +  +  + G + IA
Sbjct: 181 DDA--IASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIA 238
Query: 291 DEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNT 350
           DEVQ+G GRTG+  +  E  GV PD+ T AK I  G PL  V    E+ + +A      T
Sbjct: 239 DEVQSGAGRTGT-LFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGT 297
Query: 351 FGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM 410
           + GNP+     L VL+V ++E       D+G  L   L  + E+H  IGDVRG G M+ +
Sbjct: 298 YAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAI 357
Query: 411 ELVTDRKEKTPAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADF 465
           EL  D     P    TA +  + R+               RI  P+  T +DA  
Sbjct: 358 ELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPL--TIEDAQI 410

>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec 2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At 1.40 A Resolution Length = 397

Iteration: 1
 Score =  172 bits (436), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 122/401 (30%), Positives = 189/401 (47%), Gaps = 34/401 (8%)
Query: 75  YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI 134
           Y + P   V GK  +++DE G  YLD  +GI     GH HP ++ AI +Q++ L H + +
Sbjct: 19  YSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNL 78
Query: 135 YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALR-----N 189
           + +    + AE L+    G    V+F N+GTEANE A+ +AR           R     N
Sbjct: 79  FWNRPQXELAELLSKNTFGG--KVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHN 136
Query: 190 AYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS 249
           ++HG + G+  LTA    KY  P          +P    F        +DL+       S
Sbjct: 137 SFHGRTLGS--LTATGQPKYQKPF---------EPLVPGFEYFEFNNVEDLRRK----XS 181
Query: 250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET 309
             V     E IQG  G V     +L+    +  +   + + DEVQ G GRTG  +  ++ 
Sbjct: 182 EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGXGRTGKLF-AYQK 240
Query: 310 QGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID 369
            GV+PD++T AKG+G G+P+GAV+   E ANV+       TFGGNP+    G+ V++ + 
Sbjct: 241 YGVVPDVLTTAKGLGGGVPIGAVIVN-ERANVLEPGDHGTTFGGNPLACRAGVTVIKELT 299
Query: 370 KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVL 429
           KE       + G++L  +L+  +E +D++ DVRG GL +G++    R+E +  +  T   
Sbjct: 300 KEGFLEEVEEKGNYLXKKLQEXKEEYDVVADVRGXGLXIGIQF---REEVSNREVATKCF 356
Query: 430 FEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDAL 470
             KL                 R  PP+     + D  V+ L
Sbjct: 357 ENKL-------LVVPAGNNTIRFLPPLTVEYGEIDLAVETL 390

>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Aquifex Aeolicus Vf5 Length = 375

Iteration: 1
 Score =  169 bits (428), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 124/403 (30%), Positives = 192/403 (47%), Gaps = 43/403 (10%)
Query: 74  HYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT 133
           +Y + P+  V GK  YL+DE G+ YLD  +GI   S GH +P +  A+ EQ + L H + 
Sbjct: 6   NYARLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSN 65
Query: 134 IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG-----MIALR 188
           +Y +    + A  L        K V+F NSGTE+ E A+ +AR    + G      I+  
Sbjct: 66  LYENPWQEELAHKLVKHFWTEGK-VFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFE 124
Query: 189 NAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT 248
           N++HG + G++  T          Q + H    P     S+         D+ D +    
Sbjct: 125 NSFHGRTYGSLSATG---------QPKFHKGFEPLVPGFSYAK-----LNDI-DSVYKLL 169
Query: 249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE 308
             + AG I E IQG GG  E +  +L  + +I ++   + I DEVQTG GRTG  Y  ++
Sbjct: 170 DEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFY-AYQ 228
Query: 309 TQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPV-CSAGGLAVLRV 367
              + PD++ +AKG+G G+P+GA++   E+A         +TFGGNP+ C AG + V  V
Sbjct: 229 HFNLKPDVIALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV 288
Query: 368 IDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETA 427
              E+   H  +VG++   +L+ L +     G V+GRGLM+G+EL  + K+      E  
Sbjct: 289 ---EKLLPHVREVGNYFKEKLKELGK-----GKVKGRGLMLGLELERECKDYVLKALEKG 340
Query: 428 VLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDAL 470
           +L                     R  PP+   K+  D  +  L
Sbjct: 341 LLIN------------CTAGKVLRFLPPLIIQKEHIDRAISVL 371

>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam Length = 452

Iteration: 1
 Score =  167 bits (423), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 134/403 (33%), Positives = 197/403 (48%), Gaps = 7/403 (1%)
Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH 138
           PL I  G+   L +ENGR  +D        S G+ HP ++ A+   +     AT +   +
Sbjct: 39  PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 98
Query: 139 AIA-DFAEALASKMPGN-LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSS 196
           A A   AE L +  PG     ++F +SG++ANE A      +TG  G+IA   AYHG + 
Sbjct: 99  APAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTV 158
Query: 197 GTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYA--QDLQDHIDFGTSGKVAG 254
           G++  +  +          +  +  PDPY   + +D    A    L + +    +G +  
Sbjct: 159 GSMAFSGHSVQADAAKADGLILLPYPDPYR-PYRNDPTGDAILTLLTEKLAAVPAGSIGA 217
Query: 255 FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIP 314
              E IQ  GG +    G+L+   DI R  G + + DEV+ G  R+G  +  FE +G +P
Sbjct: 218 AFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHC-FEHEGFVP 276
Query: 315 DIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQ 374
           DI+ + KG+G GLPL AV+   EI +  A      T  GNP+ +A GLAVL  ID++   
Sbjct: 277 DILVLGKGLGGGLPLSAVIAPAEILDC-ASAFAMQTLHGNPISAAAGLAVLETIDRDDLP 335
Query: 375 AHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR 434
           A     G  L   L  L +RH +IGD+RGRGL  GMELV DR+ + PA+AETA L  +  
Sbjct: 336 AMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAY 395
Query: 435 EXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDALDYSMSKL 477
           +                  PP+  T+ D    +D LD + S+L
Sbjct: 396 QLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSEL 438

>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam (Different Binding Mode) Length = 439

Iteration: 1
 Score =  167 bits (422), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 134/403 (33%), Positives = 197/403 (48%), Gaps = 7/403 (1%)
Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH 138
           PL I  G+   L +ENGR  +D        S G+ HP ++ A+   +     AT +   +
Sbjct: 26  PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 85
Query: 139 AIA-DFAEALASKMPGN-LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSS 196
           A A   AE L +  PG     ++F +SG++ANE A      +TG  G+IA   AYHG + 
Sbjct: 86  APAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTV 145
Query: 197 GTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYA--QDLQDHIDFGTSGKVAG 254
           G++  +  +          +  +  PDPY   + +D    A    L + +    +G +  
Sbjct: 146 GSMAFSGHSVQADAAKADGLILLPYPDPYR-PYRNDPTGDAILTLLTEKLAAVPAGSIGA 204
Query: 255 FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIP 314
              E IQ  GG +    G+L+   DI R  G + + DEV+ G  R+G  +  FE +G +P
Sbjct: 205 AFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHC-FEHEGFVP 263
Query: 315 DIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQ 374
           DI+ + KG+G GLPL AV+   EI +  A      T  GNP+ +A GLAVL  ID++   
Sbjct: 264 DILVLGKGLGGGLPLSAVIAPAEILDC-ASAFAMQTLHGNPISAAAGLAVLETIDRDDLP 322
Query: 375 AHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR 434
           A     G  L   L  L +RH +IGD+RGRGL  GMELV DR+ + PA+AETA L  +  
Sbjct: 323 AMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAY 382
Query: 435 EXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDALDYSMSKL 477
           +                  PP+  T+ D    +D LD + S+L
Sbjct: 383 QLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSEL 425

>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase (Gabt) From Mycobacterium Abscessus Length = 453

Iteration: 1
 Score =  166 bits (419), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 139/431 (32%), Positives = 208/431 (48%), Gaps = 18/431 (4%)
Query: 51  PYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSC 110
           P  GP +  + ++R+  +   +      P+  V+     + D +G  ++D  AGI   + 
Sbjct: 21  PLPGPRSGALAERRRAAVSAGVGS--TAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTV 78
Query: 111 GHCHPDVLNAIFEQSKLLQHAT-TIYLHHAIADFAEALASKMPGNL-KVVYFVNSGTEAN 168
           G  HP V  AI +Q+    H    +  +      AE L +  PG+  K     NSG EA 
Sbjct: 79  GASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAV 138
Query: 169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQG----EIHHVVNPDP 224
           E A+ +ARL+TG   ++A  NAYHG ++ T+ LTA  +  Y    G    E++ +    P
Sbjct: 139 ENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTA-KSMPYKSQFGPFAPEVYRMPASYP 197
Query: 225 YH---GSFGSDAARYA-QDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDI 280
                G  G +AAR A   ++  I    +  +A  I E IQG GG +  APG+L  +   
Sbjct: 198 LRDEPGLTGEEAARRAISRIETQIG---AQSLAAIIIEPIQGEGGFIVPAPGFLATLTAW 254
Query: 281 VRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIAN 340
             + G V IADEVQTGF RTG+ ++  E +G++PDIVTMA GI  G+PL AV    E+ +
Sbjct: 255 ASENGVVFIADEVQTGFARTGA-WFASEHEGIVPDIVTMAXGIAGGMPLSAVTGRAELMD 313
Query: 341 VMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGD 400
            +       T+GGNPV  A  +A L V+ +    A    + + +  RL  L E  DIIG+
Sbjct: 314 AVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGE 373
Query: 401 VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTK 460
           VRGRG M+ +E+V     +  A    ++  E L +               R+ PP+    
Sbjct: 374 VRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQ-GVLILTCGTFGNVIRLLPPLVIGD 432
Query: 461 DDADFLVDALD 471
           D  D  + AL 
Sbjct: 433 DLLDEGITALS 443

>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis Aminotransferase Length = 452

Iteration: 1
 Score =  162 bits (410), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 126/414 (30%), Positives = 189/414 (45%), Gaps = 28/414 (6%)
Query: 89  YLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALA 148
           ++ D  G+RYLD  +G+  V+ G+   ++  A ++Q + L +      H      AE L 
Sbjct: 42  WVEDIQGKRYLDGXSGLWCVNSGYGRKELAEAAYKQLQTLSYFPXSQSHEPAIKLAEKLN 101
Query: 149 SKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRNAYHGGSSGTIGLT 202
             + G   V++F NSG+EANE A  +AR      G        +    YHG +  T   T
Sbjct: 102 EWLGGEY-VIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFXSRYRGYHGNTXATXAAT 160
Query: 203 ALNTWKY---PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHID----FGTSGKVAGF 255
                +Y   P   G +H V  PD Y          Y  +    +D    +  S  +A F
Sbjct: 161 GQAQRRYQYEPFASGFLH-VTPPDCYRXPGIERENIYDVECVKEVDRVXTWELSETIAAF 219
Query: 256 IAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPD 315
           I E I   GG +     Y K V++  +K G + I+DEV  GFGRTG  + GF    V PD
Sbjct: 220 IXEPIITGGGILXAPQDYXKAVHETCQKHGALLISDEVICGFGRTGKAF-GFXNYDVKPD 278
Query: 316 IVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQF------NTFGGNPVCSAGGLAVLRVI 368
           I+T AKGI +  LPL A     EI      K ++      NTFGGNP   A  L  L +I
Sbjct: 279 IITXAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEII 338
Query: 369 DKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAET-A 427
           + E      A  GS LL +L+     H ++GD+RG+GL+VG+ELV D++ K P   +  A
Sbjct: 339 ENENLIERSAQXGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIA 398
Query: 428 VLFEKLREXXXXXXXXXXXXXXFR----IKPPMCFTKDDADFLVDALDYSMSKL 477
            +    +E              +     + PP+  + ++  F++  L  +  ++
Sbjct: 399 SVVNACKEKGLIIGRNGXTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAXERI 452

>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine Transaminase From E. Coli Length = 406

Iteration: 1
 Score =  157 bits (396), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/361 (31%), Positives = 169/361 (46%), Gaps = 30/361 (8%)
Query: 64  RKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFE 123
           R+ F    I  Y   P   V G+   L+D+ G+ Y+D   GI   + GH HP++  A+ E
Sbjct: 7   RENFDEWMIPVYAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNE 66
Query: 124 QSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR------L 177
           Q+    H    Y +  +   A+ L      +   V+F NSG EANE A+ +AR       
Sbjct: 67  QASKFWHTGNGYTNEPVLRLAKKLIDATFADR--VFFCNSGAEANEAALKLARKFAHDRY 124
Query: 178 STGNLGMIALRNAYHGGSSGTI---GLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAA 234
            +   G++A +NA+HG +  T+   G  A +    P+P  +I H    D    S   D +
Sbjct: 125 GSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLP-ADIRHAAYNDINSASALIDDS 183
Query: 235 RYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQ 294
             A                  I E IQG GG V  +  +L+ + ++  +   + I DEVQ
Sbjct: 184 TCA-----------------VIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQ 226
Query: 295 TGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGN 354
           TG GRTG  Y  +   GV PD++T AK +G G P+GA++ T E A VM       T+GGN
Sbjct: 227 TGVGRTGELY-AYMHYGVTPDLLTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGN 285
Query: 355 PVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVT 414
           P+ SA    VL +I+               + RL T+  R+ +  +VRG GL++G  L  
Sbjct: 286 PLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNA 345
Query: 415 D 415
           D
Sbjct: 346 D 346

>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From Silicibacter Pomeroyi Length = 472

Iteration: 1
 Score =  151 bits (382), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 116/403 (28%), Positives = 190/403 (47%), Gaps = 24/403 (5%)
Query: 82  IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY--LHHA 139
           I   +  +L D  G   LDA AG+  V+ G+   ++      Q + L +  T +   H  
Sbjct: 41  ITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHVP 100
Query: 140 IADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRNAYHG 193
               A+ LA   PG+L  V+F   G+EAN+  + M R    N G      +I+ +NAYHG
Sbjct: 101 AIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHG 160
Query: 194 ---GSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARY----AQDLQDHIDF 246
               SS   G+  ++     IP  ++HH+  P+ +      D   +    A++L++ I  
Sbjct: 161 STVASSALGGMAGMHAQSGLIP--DVHHINQPNWWAEGGDMDPEEFGLARARELEEAILE 218
Query: 247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG 306
               +VA FIAE +QG GG +     Y   +  I  K   + IADEV  GFGRTG+ ++G
Sbjct: 219 LGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGN-WFG 277
Query: 307 FETQGVIPDIVTMAKGIGNGL-PLGAVVTTPEIANVMAQKIQFN---TFGGNPVCSAGGL 362
            +T G+ P I+T+AKG+ +G  P+G  +   E+A+V+  K +FN   T+ G+PV +A  L
Sbjct: 278 TQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIG-KDEFNHGYTYSGHPVAAAVAL 336
Query: 363 AVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA 422
             LR++++E    H  +V +  L         H ++G+ +  G+M  + L  ++  +   
Sbjct: 337 ENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKF 396
Query: 423 KAETAVLFEKLREXX-XXXXXXXXXXXXFRIKPPMCFTKDDAD 464
            +E   +    RE                 I PP+  T  + D
Sbjct: 397 ASEPGTIGYICRERCFANNLIMRHVGDRMIISPPLVITPAEID 439

>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine Aminotransferase From Salmonella Typhimurium: Studies On Substrate Specificity And Inhibitor Binding Length = 420

Iteration: 1
 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 163/348 (46%), Gaps = 48/348 (13%)
Query: 83  VEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIAD 142
           V+GK   ++D+ G+ Y+D   GI   + GHCHP ++ A+  Q + L H + ++ +     
Sbjct: 44  VKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALR 103
Query: 143 FAEALASKMPGNLKVVYFVNSGTEANELAMLMARL------STGNLGMIALRNAYHGGSS 196
               L        + V F+NSGTEANE A  +AR       S     +IA  NA+HG S 
Sbjct: 104 LGRKLIDATFA--ERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSL 161
Query: 197 GTIGLTALNTWKY---PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA 253
            T+ +     +     P P   IH   N          D       + DH          
Sbjct: 162 FTVSVGGQPKYSDGFGPKPADIIHVPFN----------DLHAVKAVMDDH--------TC 203
Query: 254 GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVI 313
             + E IQG GG     P +LK + D+  +   + + DEVQ G GRTG   + +   GV 
Sbjct: 204 AVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGD-LFAYMHYGVT 262
Query: 314 PDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPV-CSAGGLA--------V 364
           PDI+T AK +G G P+ A++TT EIA+        +T+GGNP+ C+  G A        V
Sbjct: 263 PDILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEV 322
Query: 365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMEL 412
           L+ I  +R+Q          +  L+ + E+ DI  D+RG GL++G EL
Sbjct: 323 LQGIHTKRQQ---------FVQHLQAIDEQFDIFSDIRGMGLLIGAEL 361

>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 453

Iteration: 1
 Score =  147 bits (372), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 169/342 (49%), Gaps = 10/342 (2%)
Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT-TIYLH 137
           P+ +V      L D +G + +D  +GI   + G+  P V++A+ +Q     H    +  +
Sbjct: 51  PVYVVAAGGGVLADADGNQLIDFGSGIAVTTVGNSAPAVVDAVTQQVAAFTHTCFMVTPY 110
Query: 138 HAIADFAEALASKMPGN-LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSS 196
                 AE L    PG+  K     NSG EA E A+ +AR  T    ++   +AYHG ++
Sbjct: 111 EGYVKVAEHLNRLTPGDHEKRTALFNSGAEAVENAVKIARAYTRRQAVVVFDHAYHGRTN 170
Query: 197 GTIGLTALNT-WKY---PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG-K 251
            T+ +TA N  +K+   P    E++ V    P+     +D A  A    D I+       
Sbjct: 171 LTMAMTAKNQPYKHGFGPFAN-EVYRVPTSYPFRDG-ETDGAAAAAHALDLINKQVGADN 228
Query: 252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQG 311
           VA  + E + G GG V  APG+L  +       G V +ADEVQTGF RTG+  +  E + 
Sbjct: 229 VAAVVIEPVHGEGGFVVPAPGFLGALQKWCTDNGAVFVADEVQTGFARTGA-LFACEHEN 287
Query: 312 VIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKE 371
           V+PD++  AKGI  GLPL AV    EI +         T+GGNP+  A  LAV+  I++E
Sbjct: 288 VVPDLIVTAKGIAGGLPLSAVTGRAEIMDGPQSGGLGGTYGGNPLACAAALAVIDTIERE 347
Query: 372 RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELV 413
              A    +G  +L RL  L      IG+VRGRG M+ +ELV
Sbjct: 348 NLVARARAIGETMLSRLGALAAADPRIGEVRGRGAMIAVELV 389

>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From Vibrio Fluvialis Length = 473

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 189/422 (44%), Gaps = 32/422 (7%)
Query: 82  IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL--QHATTIYLHHA 139
           +  G+  Y+ D NGRRYLDA +G+  +  G  H  +++A   Q +     HA    +   
Sbjct: 53  VTHGEGPYIVDVNGRRYLDANSGLFNMVAGFDHKGLIDAAKAQYERFPGYHAAFGKMSDQ 112
Query: 140 IADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRNAYHG 193
               +E L    P +   V++ NSG+EAN+  + M        G      ++   NAYHG
Sbjct: 113 TVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHG 172
Query: 194 GSSGTIGLTAL---NTWKYPIPQGEIHHVVNPDPYHGSFGSDA-------ARYAQDLQDH 243
            ++ +  +T     + +  P+P G +H      P++  +G +        AR A++L++ 
Sbjct: 173 ATAVSASMTGFPYNSVFGLPLP-GFVHLTC---PHYWRYGEEGETEEQFVARLARELEET 228
Query: 244 IDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH 303
           I    +  +AGF AE + G GG +  A GY + +  I+RK     I+DEV  GFGRTG+ 
Sbjct: 229 IQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVVCGFGRTGNT 288
Query: 304 YWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQF-------NTFGGNP 355
            WG  T    PD +  +  +  G  P+GAV+  PE++  +   I+         T  G+P
Sbjct: 289 -WGCVTYDFTPDAIISSXNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHP 347
Query: 356 VCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTD 415
           V  A  L  + V+  E    +   +      RL+ + ER + IG+ RG G M  +E V D
Sbjct: 348 VGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPN-IGEYRGIGFMWALEAVKD 406
Query: 416 RKEKTPAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDALDYSMS 475
           +  KTP     +V                       + PP   T+   D + D L+ ++ 
Sbjct: 407 KASKTPFDGNLSVSERIANTCTDLGLICFPLGQSVVLCPPFILTEAQMDEMFDKLEKALD 466
Query: 476 KL 477
           K+
Sbjct: 467 KV 468

>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound To Pyridoxal Phosphate Length = 467

Iteration: 1
 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 128/413 (30%), Positives = 184/413 (44%), Gaps = 34/413 (8%)
Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT-TIYLH 137
           P+ +V      + D +G R +D  +GI   + G+  P V++A+ +Q +   H    +  +
Sbjct: 61  PVFVVRAGGGIVEDADGNRLIDLGSGIAVTTIGNSAPRVVDAVRDQVEQFTHTCFMVTPY 120
Query: 138 HAIADFAEALASKMPGN-LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSS 196
                 AE L    PG+  K     NSG EA E ++ +AR  T    ++A   AYHG ++
Sbjct: 121 EQYVAVAEQLNRITPGSGEKRTVLFNSGAEAVENSIKVARAHTRKQAVVAFDYAYHGRTN 180
Query: 197 GTIGLTALNTWKYPIPQG------EIHHVVNPDPYHGSF--------GSDAARYAQDLQD 242
            T+ LTA      P   G      EI+      PY  +         G  AA  A +L D
Sbjct: 181 LTMALTA---KSMPYKSGFGPFAPEIYRAPVSYPYRDNLLDKDIATDGELAAERAINLID 237
Query: 243 HIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS 302
               G +  +A  I E I G GG +  A G+L  +    R    V IADEVQTGF RTG+
Sbjct: 238 K-QIG-AANLAAVIIEPIAGEGGFIVPADGFLPALQRWCRDNDVVFIADEVQTGFARTGA 295
Query: 303 HYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGL 362
            +   + + V PD++  A GI +G PL AV    EI +         TFGGNPV  A  L
Sbjct: 296 MF-ACDHENVEPDLIVTAXGIADGFPLSAVTGRAEIMDAPHTSGLGGTFGGNPVACAAAL 354
Query: 363 AVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA 422
           A +  I+++        +   ++ RL  LQ   D +GDVRGRG M+ MELV     K+  
Sbjct: 355 ATIETIERDGMVERARQIERLVMDRLLRLQAADDRLGDVRGRGAMIAMELV-----KSGT 409
Query: 423 KAETAVLFEKLREXXXXXXXXXXXXXXF----RIKPPMCFTKDDADFLVDALD 471
               A L +KL                F    R+ PP+  +    + L + LD
Sbjct: 410 AEPDAALTQKLAAAAHAAGVIVLTCGMFGNVIRLLPPLTISD---ELLSEGLD 459

>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 451

Iteration: 1
 Score =  145 bits (367), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 117/355 (32%), Positives = 160/355 (45%), Gaps = 30/355 (8%)
Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT-TIYLH 137
           P+  V      + D +G R +D  +GI   + G+  P V+ A+  Q     H    +  +
Sbjct: 44  PVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPY 103
Query: 138 HAIADFAEALASKMP--GNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGS 195
                  E L    P  G+ +   F NSG+EA E A+ +AR  T    ++A  +AYHG +
Sbjct: 104 EGYVAVCEQLNRLTPVRGDKRSALF-NSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRT 162
Query: 196 SGTIGLTA-----------------LNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQ 238
           + T+ LTA                      YP    E    +  D   G   +  A    
Sbjct: 163 NLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATD---GELAAKRAITVI 219
Query: 239 DLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG 298
           D Q   D      +A  + E IQG GG +  A G+L  + D  RK   V IADEVQTGF 
Sbjct: 220 DKQIGAD-----NLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFA 274
Query: 299 RTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCS 358
           RTG+ +   E +G+ PD++  A GI  GLPL AV    EI +         T+GGNP+  
Sbjct: 275 RTGAMF-ACEHEGIDPDLIVTAXGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIAC 333
Query: 359 AGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELV 413
           A  LA +  I+ E   A    +   +  RL  LQ   D IGDVRGRG M+ MELV
Sbjct: 334 AAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELV 388

>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio Fluvialis Js17 Length = 478

Iteration: 1
 Score =  145 bits (366), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 190/422 (45%), Gaps = 32/422 (7%)
Query: 82  IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL--QHATTIYLHHA 139
           +  G+  Y+ D NGRRYLDA +G+  +  G  H  +++A   Q +     HA    +   
Sbjct: 47  VTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQ 106
Query: 140 IADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRNAYHG 193
               +E L    P +   V++ NSG+EAN+  + M        G      ++   NAYHG
Sbjct: 107 TVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHG 166
Query: 194 GSSGTIGLTAL---NTWKYPIPQGEIHHVVNPDPYHGSFGSDA-------ARYAQDLQDH 243
            ++ +  +T     + +  P+P G +H      P++  +G +        AR A++L++ 
Sbjct: 167 VTAVSASMTGKPYNSVFGLPLP-GFVHLTC---PHYWRYGEEGETEEQFVARLARELEET 222
Query: 244 IDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH 303
           I    +  +AGF AE + G GG +  A GY + +  I+RK     I+DEV  GFGRTG +
Sbjct: 223 IQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG-N 281
Query: 304 YWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQF-------NTFGGNP 355
            WG  T    PD +  +K +  G  P+GAV+  PE++  +   I+         T  G+P
Sbjct: 282 TWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHP 341
Query: 356 VCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTD 415
           V  A  L  + V+  E    +   +      RL+ + ER + IG+ RG G M  +E V D
Sbjct: 342 VGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPN-IGEYRGIGFMWALEAVKD 400
Query: 416 RKEKTPAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDALDYSMS 475
           +  KTP     +V                       + PP   T+   D + D L+ ++ 
Sbjct: 401 KASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVLCPPFILTEAQMDEMFDKLEKALD 460
Query: 476 KL 477
           K+
Sbjct: 461 KV 462

>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii Length = 433

Iteration: 1
 Score =  141 bits (355), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 182/404 (45%), Gaps = 43/404 (10%)
Query: 74  HYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT 133
           +Y   P+ +   K  +++D N +RY D  +   +V+ GHCHP++LNA+  Q+K L   + 
Sbjct: 43  NYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSR 102
Query: 134 IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR--------LSTGNLGMI 185
            +    +    E   + + G  KV+  +N+G EANE A  + R        +      ++
Sbjct: 103 AFFSVPLG-ICERYLTNLLGYDKVL-MMNTGAEANETAYKLCRKWGYEVKKIPENMAKIV 160
Query: 186 ALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHID 245
             +N + G + G I  +A  T K     G      +  PY      D     ++L+D   
Sbjct: 161 VCKNNFSGRTLGCI--SASTTKKCTSNFGPFAPQFSKVPY-----DDLEALEEELKD--- 210
Query: 246 FGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS--- 302
                 V  FI E IQG  G +  +  YL+ VYDI +K   + +ADEVQTG GRTG    
Sbjct: 211 ----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLC 266
Query: 303 -HYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAG 360
            H++      V PD++ + K +  G  P+ AV+   +I  V+      +T+GGNP+ ++ 
Sbjct: 267 VHHY-----NVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASI 321
Query: 361 GLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKT 420
            +  L V+  E+   +   +G   L  L+   +   I+ DVRG+GL+  +E   +     
Sbjct: 322 CVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL---- 377
Query: 421 PAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDAD 464
                  VL   L+                R+ PP+C TK+  D
Sbjct: 378 -----VNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLD 416

>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter Aurescens In Complex With Plp Length = 456

Iteration: 1
 Score =  139 bits (351), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 127/435 (29%), Positives = 207/435 (47%), Gaps = 25/435 (5%)
Query: 52  YTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCG 111
           + GP +  + ++R   +   +      P+ + +     + D +G  ++D  +GI   S G
Sbjct: 22  FPGPKSQALAERRSAVVAAGVASGV--PVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVG 79
Query: 112 HCHPDVLNAIFEQSKLLQHAT-TIYLHHAIADFAEALASKMPGN-LKVVYFVNSGTEANE 169
              P V+ A+ E +    H    +  +       E L    PG+  K     NSG EA E
Sbjct: 80  ASDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVE 139
Query: 170 LAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQG----EIHHVVNPDPY 225
            A+ +ARL+TG   ++A  +AYHG ++ T+ LTA     Y    G    E++ +    P+
Sbjct: 140 NAVKVARLATGRDAVVAFDHAYHGRTNLTMALTA-KAMPYKTNFGPFAPEVYRMPMSYPF 198
Query: 226 HGS----FGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIV 281
                   G++AA+ A  + +    G   +VA  I E IQG GG +  A G+L  + +  
Sbjct: 199 REENPEITGAEAAKRAITMIEKQIGGD--QVAAIIIEPIQGEGGFIVPAEGFLPALSEWA 256
Query: 282 RKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANV 341
           ++ G V IADEVQ+GF RTG  ++  + +GV+PDI+TMAKGI  GLPL A+    ++ + 
Sbjct: 257 KEKGIVFIADEVQSGFCRTG-EWFAVDHEGVVPDIITMAKGIAGGLPLSAITGRADLLDA 315
Query: 342 MAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQER-----HD 396
           +       T+GGNPV  A  LA +  +++         +    LG+LR L          
Sbjct: 316 VHPGGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGS 375
Query: 397 IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPM 456
           ++GD+RGRG M+ +ELV    ++  A+   AV    L+E               R+ PP+
Sbjct: 376 VVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLKE-GVIILTCGTYGNVIRLLPPL 434
Query: 457 CFTKDDADFLVDALD 471
             +    + L+D L+
Sbjct: 435 VISD---ELLIDGLE 446

>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From Vibrio Fluvialis Length = 473

Iteration: 1
 Score =  137 bits (346), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 120/422 (28%), Positives = 183/422 (43%), Gaps = 32/422 (7%)
Query: 82  IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHA 139
           +  G+  Y+ D NGRRYLDA +G+     G  H  +++A   Q +     HA        
Sbjct: 53  VTHGEGPYIVDVNGRRYLDANSGLWNXVAGFDHKGLIDAAKAQYERFPGYHAFFGRXSDQ 112
Query: 140 IADFAEALASKMPGNLKVVYFVNSGTEANE-----LAMLMARLSTGNLGMIALR-NAYHG 193
               +E L    P +   V++ NSG+EAN+     L  L A         I  R NAYHG
Sbjct: 113 TVXLSEKLVEVSPFDSGRVFYTNSGSEANDTXVKXLWFLHAAEGKPQKRKILTRWNAYHG 172
Query: 194 G---SSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDA-------ARYAQDLQDH 243
               S+   G    + +  P+P G +H      P++  +G +        AR A++L++ 
Sbjct: 173 VTAVSASXTGKPYNSVFGLPLP-GFVHLTC---PHYWRYGEEGETEEQFVARLARELEET 228
Query: 244 IDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH 303
           I    +  +AGF AE + G GG +  A GY + +  I+RK     I+DEV  GFGRTG +
Sbjct: 229 IQREGADTIAGFFAEPVXGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG-N 287
Query: 304 YWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQF-------NTFGGNP 355
            WG  T    PD +  +K +  G  P GAV+  PE++  +   I+         T  G+P
Sbjct: 288 TWGCVTYDFTPDAIISSKNLTAGFFPXGAVILGPELSKRLETAIEAIEEFPHGFTASGHP 347
Query: 356 VCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTD 415
           V  A  L  + V+  E    +   +      RL+ + ER + IG+ RG G    +E V D
Sbjct: 348 VGCAIALKAIDVVXNEGLAENVRRLAPRFEERLKHIAERPN-IGEYRGIGFXWALEAVKD 406
Query: 416 RKEKTPAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDALDYSMS 475
           +  KTP     +V                       + PP   T+   D   D L+ ++ 
Sbjct: 407 KASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVLCPPFILTEAQXDEXFDKLEKALD 466
Query: 476 KL 477
           K+
Sbjct: 467 KV 468

>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus Denitrificans Length = 465

Iteration: 1
 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/422 (27%), Positives = 188/422 (44%), Gaps = 32/422 (7%)
Query: 82  IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHA 139
           +  G+  Y+ D +GRRYLDA +G+  +  G  H  ++ A   Q       HA    +   
Sbjct: 45  VTHGEGPYIVDVHGRRYLDANSGLWNMVAGFDHKGLIEAAKAQYDRFPGYHAFFGRMSDQ 104
Query: 140 IADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRNAYHG 193
               +E L    P +   V++ NSG+EAN+  + M        G      ++   NAYHG
Sbjct: 105 TVMLSEKLVEVSPFDNGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHG 164
Query: 194 GSSGTIGLTAL---NTWKYPIPQGEIHHVVNPDPYHGSFGSDA-------ARYAQDLQDH 243
            ++ +  +T     + +  P+P G IH      P++  +G +        AR A++L+D 
Sbjct: 165 VTAVSASMTGKPYNSVFGLPLP-GFIHLTC---PHYWRYGEEGETEAQFVARLARELEDT 220
Query: 244 IDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH 303
           I    +  +AGF AE + G GG +  A GY + +  I+RK     I+DEV  GFGRTG+ 
Sbjct: 221 ITREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPMISDEVICGFGRTGNT 280
Query: 304 YWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQF-------NTFGGNP 355
            WG  T   +PD +  +  +  G  P+GAV+  P++A  +   ++         T  G+P
Sbjct: 281 -WGCLTYDFMPDAIISSXNLTAGFFPMGAVILGPDLAKRVEAAVEAIEEFPHGFTASGHP 339
Query: 356 VCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTD 415
           V  A  L  + V+  E    +   +       L+ + +R + IG+ RG G M  +E V D
Sbjct: 340 VGCAIALKAIDVVMNEGLAENVRRLAPRFEAGLKRIADRPN-IGEYRGIGFMWALEAVKD 398
Query: 416 RKEKTPAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDALDYSMS 475
           +  KTP  A  +V                       + PP   T+   D + + L+ ++ 
Sbjct: 399 KPTKTPFDANLSVSERIANTCTDLGLICRPLGQSIVLCPPFILTEAQMDEMFEKLEKALD 458
Query: 476 KL 477
           K+
Sbjct: 459 KV 460

>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i Y55a G320f Length = 439

Iteration: 1
 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/365 (29%), Positives = 169/365 (46%), Gaps = 37/365 (10%)
Query: 55  PSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCH 114
           P++D +F++  ++      + +  P+ +  GK  YL+D  GR+Y D  + I  V+ GHCH
Sbjct: 38  PTSDDIFEREYKY---GAHNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCH 94
Query: 115 PDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLM 174
           P ++NA+  Q   L   +  + ++ + ++ E +      N   V  +N+G EA E A  +
Sbjct: 95  PKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKL 152
Query: 175 ARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFG---- 230
           AR     +  I    A        I   A N W   +    I    +P  Y G FG    
Sbjct: 153 ARKWGYTVKGIQKYKA-------KIVFAAGNFWGRTL--SAISSSTDPTSYDG-FGPFMP 202
Query: 231 -------SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK 283
                  +D     + LQD         VA F+ E IQG  G V   PGYL  V ++  +
Sbjct: 203 GFDIIPYNDLPALERALQDP-------NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTR 255
Query: 284 AGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGL-PLGAVVTTPEIANVM 342
              + IADE+QTG  RTG  +   + + V PDIV + K +  GL P+ AV+   +I   +
Sbjct: 256 HQVLFIADEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTI 314
Query: 343 AQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR 402
                F+T+GGNP+     +A L V+++E    +   +G  L   L  L    D++  VR
Sbjct: 315 KPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPS--DVVTAVR 372
Query: 403 GRGLM 407
           G+GL+
Sbjct: 373 GKGLL 377

>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i Length = 439

Iteration: 1
 Score =  137 bits (344), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/365 (29%), Positives = 169/365 (46%), Gaps = 37/365 (10%)
Query: 55  PSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCH 114
           P++D +F++  ++      +Y+  P+ +  GK  YL+D  GR+Y D  + I  V+ GHCH
Sbjct: 38  PTSDDIFEREYKY---GAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCH 94
Query: 115 PDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLM 174
           P ++NA+  Q   L   +  + ++ + ++ E +      N   V  +N+G EA E A  +
Sbjct: 95  PKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKL 152
Query: 175 ARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFG---- 230
           AR     +  I    A        I   A N W   +    I    +P  Y G FG    
Sbjct: 153 ARKWGYTVKGIQKYKA-------KIVFAAGNFWGRTL--SAISSSTDPTSYDG-FGPFMP 202
Query: 231 -------SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK 283
                  +D     + LQD         VA F+ E IQG  G V   PGYL  V ++  +
Sbjct: 203 GFDIIPYNDLPALERALQDP-------NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTR 255
Query: 284 AGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGL-PLGAVVTTPEIANVM 342
              + IADE+QTG  RTG  +   + + V PDIV + K +  GL P+ AV+   +I   +
Sbjct: 256 HQVLFIADEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTI 314
Query: 343 AQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR 402
                 +T+GGNP+     +A L V+++E    +   +G  L   L  L    D++  VR
Sbjct: 315 KPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPS--DVVTAVR 372
Query: 403 GRGLM 407
           G+GL+
Sbjct: 373 GKGLL 377

>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From Sulfolobus Tokodaii Strain7 Length = 419

Iteration: 1
 Score =  135 bits (339), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 174/351 (49%), Gaps = 31/351 (8%)
Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGH-CHPDVLNAIFEQSKLLQHATTIYLH 137
           PL I  G+  +++D +G +YLD  +GI   + G   HP+V+    EQ + L HA     +
Sbjct: 25  PLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFY 84
Query: 138 HAIA-DFAEALASKMPGNL-KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGS 195
           +    + A+ L +  PGN  K V+F NSGTEA E ++ + + +TG   +IA    +HG +
Sbjct: 85  NIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVK-NTGRKYIIAFLGGFHGRT 143
Query: 196 SGTIGLTALNTWKY----PIPQGEIHHVVNPDPYHGSFGSD--------AARYAQDLQDH 243
            G+I LTA    +     P   G IH V  P+PY   +  +          R  + ++D+
Sbjct: 144 FGSISLTASKAVQRSIVGPFMPGVIH-VPYPNPYRNPWHINGYENPSELVNRVIEFIEDY 202
Query: 244 I--DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTG 301
           I  +     +VAG   E IQG GG V     +   +  + +K G + + DEVQ G GRTG
Sbjct: 203 IFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTG 262
Query: 302 SHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAG 360
             +   E    +PD++T+AK +G G +P+GA +   ++       +  NTFGGN +  A 
Sbjct: 263 KLF-AIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD--FKPGMHSNTFGGNALACAI 319
Query: 361 GLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGME 411
           G  V+ ++  +    H  ++G      L+ L +      DVRG GL  G+E
Sbjct: 320 GSKVIDIV--KDLLPHVNEIGKIFAEELQGLAD------DVRGIGLAWGLE 362

>pdb|1OAT|A Chain A, Ornithine Aminotransferase Length = 439

Iteration: 1
 Score =  134 bits (338), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 168/365 (46%), Gaps = 37/365 (10%)
Query: 55  PSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCH 114
           P++D +F++  ++      +Y+  P+ +  GK  YL+D  GR+Y D  +    V+ GHCH
Sbjct: 38  PTSDDIFEREYKY---GAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCH 94
Query: 115 PDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLM 174
           P ++NA+  Q   L   +  + ++ + ++ E +      N   V  +N+G EA E A  +
Sbjct: 95  PKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKL 152
Query: 175 ARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFG---- 230
           AR     +  I    A        I   A N W   +    I    +P  Y G FG    
Sbjct: 153 ARKWGYTVKGIQKYKA-------KIVFAAGNFWGRTL--SAISSSTDPTSYDG-FGPFMP 202
Query: 231 -------SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK 283
                  +D     + LQD         VA F+ E IQG  G V   PGYL  V ++  +
Sbjct: 203 GFDIIPYNDLPALERALQDP-------NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTR 255
Query: 284 AGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGL-PLGAVVTTPEIANVM 342
              + IADE+QTG  RTG  +   + + V PDIV + K +  GL P+ AV+   +I   +
Sbjct: 256 HQVLFIADEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTI 314
Query: 343 AQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR 402
                 +T+GGNP+     +A L V+++E    +   +G  L   L  L    D++  VR
Sbjct: 315 KPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPS--DVVTAVR 372
Query: 403 GRGLM 407
           G+GL+
Sbjct: 373 GKGLL 377

>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From Chromobacterium Violaceum In The Apo Form, Crystallised From Polyacrylic Acid Length = 459

Iteration: 1
 Score =  134 bits (338), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 115/363 (31%), Positives = 174/363 (47%), Gaps = 32/363 (8%)
Query: 82  IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY--LHHA 139
           +  G+  YL+D  G + +D  AG+  V+ G+   D   A   Q + L    T +   H A
Sbjct: 36  MTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPA 95
Query: 140 IADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRNAYHG 193
           + + +  LA   P     V++ NSG+E+ +  + M R      G      +I   N YHG
Sbjct: 96  VVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHG 155
Query: 194 GSSGTIGLTALNTWKYPIPQGEI-----HHVVNPDPY-HG------SFGSDAARYAQDLQ 241
               TIG  +L   KY   QG++      H+  P  Y HG       FG  AAR+   L+
Sbjct: 156 S---TIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARW---LE 209
Query: 242 DHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTG 301
           + I    + KVA F+ E IQG GG +     Y   +  I RK   + +ADEV  GFGRTG
Sbjct: 210 EKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTG 269
Query: 302 SHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFN---TFGGNPVC 357
             ++G +  G  PD+ T AKG+ +G LP+GAV     +A  +     FN   T+ G+PVC
Sbjct: 270 E-WFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVC 328
Query: 358 SAGGLAVLRVI-DKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDR 416
           +A   A +  + D+   Q    D+G ++  R R    R + + DVRG G++    LV ++
Sbjct: 329 AAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNK 388
Query: 417 KEK 419
            ++
Sbjct: 389 AKR 391

>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline Length = 402

Iteration: 1
 Score =  134 bits (338), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 168/365 (46%), Gaps = 37/365 (10%)
Query: 55  PSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCH 114
           P++D +F++  ++      +Y+  P+ +  GK  YL+D  GR+Y D  +    V+ GHCH
Sbjct: 1   PTSDDIFEREYKY---GAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCH 57
Query: 115 PDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLM 174
           P ++NA+  Q   L   +  + ++ + ++ E +      N   V  +N+G EA E A  +
Sbjct: 58  PKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKL 115
Query: 175 ARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFG---- 230
           AR     +  I    A        I   A N W   +    I    +P  Y G FG    
Sbjct: 116 ARKWGYTVKGIQKYKA-------KIVFAAGNFWGRTL--SAISSSTDPTSYDG-FGPFMP 165
Query: 231 -------SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK 283
                  +D     + LQD         VA F+ E IQG  G V   PGYL  V ++  +
Sbjct: 166 GFDIIPYNDLPALERALQDP-------NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTR 218
Query: 284 AGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGL-PLGAVVTTPEIANVM 342
              + IADE+QTG  RTG  +   + + V PDIV + K +  GL P+ AV+   +I   +
Sbjct: 219 HQVLFIADEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTI 277
Query: 343 AQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR 402
                 +T+GGNP+     +A L V+++E    +   +G  L   L  L    D++  VR
Sbjct: 278 KPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPS--DVVTAVR 335
Query: 403 GRGLM 407
           G+GL+
Sbjct: 336 GKGLL 340

>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine Delta-Aminotransferase Length = 422

Iteration: 1
 Score =  134 bits (337), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 181/408 (44%), Gaps = 51/408 (12%)
Query: 74  HYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT 133
           +Y   P+ +  GK  +++D   RRY D  +   +V+ GHCHPD+LNA+  Q+K L   + 
Sbjct: 24  NYDPIPVVLKRGKGVFVYDIEDRRYYDFLSAYSSVNQGHCHPDILNAMINQAKKLTICSR 83
Query: 134 IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR--------LSTGNLGMI 185
            +   ++    E   + + G  KV+  +N+G EA+E A  + R        +   +  +I
Sbjct: 84  AFFSDSLG-VCERYLTNLFGYDKVL-MMNTGAEASETAYKLCRKWGYEVKKIPENSAKII 141
Query: 186 ALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSF----GSDAARYAQDLQ 241
              N + G + G +  +     K            N  P+  +F      D     ++LQ
Sbjct: 142 VCNNNFSGRTLGCVSASTDKKCKN-----------NFGPFVPNFLKVPYDDLEALEKELQ 190
Query: 242 DHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTG 301
           D         V  FI E +QG  G +  +  Y   V  + +K   + +ADEVQTG GRTG
Sbjct: 191 D-------PNVCAFIVEPVQGEAGVIVPSDSYFPGVASLCKKYNVLFVADEVQTGLGRTG 243
Query: 302 ----SHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGGNPV 356
               +H++     GV PD++ + K +  G  P+ A++   ++  V+      +T+GGNP+
Sbjct: 244 KLLCTHHY-----GVKPDVILLGKALSGGHYPISAILANDDVMLVLKPGEHGSTYGGNPL 298
Query: 357 CSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDR 416
            +A  +  L+V+  E+   +   +G+  L  L+   +   ++ +VRG+GL+  +E   D 
Sbjct: 299 AAAICVEALKVLINEKLCENADKLGAPFLQNLKEQLKDSKVVREVRGKGLLCAIEFKNDL 358
Query: 417 KEKTPAKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDAD 464
                      V    L+                R+ PP+C TK+  D
Sbjct: 359 ---------VNVWDICLKFKENGLITRSVHDKTVRLTPPLCITKEQLD 397

>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase Rocd From Bacillus Anthracis Length = 392

Iteration: 1
 Score =  132 bits (333), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/414 (24%), Positives = 189/414 (45%), Gaps = 47/414 (11%)
Query: 74  HYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT 133
           +Y+  P+ I + +  ++ D  G RY+D  +    V+ GH HP ++NA+ +Q+  +   + 
Sbjct: 14  NYHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSR 73
Query: 134 IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR--------LSTGNLGMI 185
            +    +  + E +A     N ++V  +N+G EA E A+  AR        +      +I
Sbjct: 74  AFHSDQLGPWYEKVAKLT--NKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEII 131
Query: 186 ALRNAYHGGSSGTIGLTALNTWKY---PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQD 242
              + +HG + G + +++   +K    P+  G I  V+   PY             DL+ 
Sbjct: 132 VCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGII--VI---PYG------------DLE- 173
Query: 243 HIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS 302
            +    +   A FI E IQG  G      G+LK   ++ +K   + +ADE+QTG GRTG 
Sbjct: 174 ALKAAITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK 233
Query: 303 HYWGFETQGVIPDIVTMAKGIGNGL-PLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGG 361
            +   +   V PD+  +   +G G+ P+       +I  V       +TFGGNP+  A  
Sbjct: 234 VF-ACDWDNVTPDMYILGXALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVS 292
Query: 362 LAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTP 421
           +A L V+++E+       +G  L+G+L+ +   + +I +VRG+GL +G+EL    +    
Sbjct: 293 IAALEVLEEEKLTERSLQLGEKLVGQLKEID--NPMITEVRGKGLFIGIELNEPARPYCE 350
Query: 422 AKAETAVLFEKLREXXXXXXXXXXXXXXFRIKPPMCFTKDDADFLVDALDYSMS 475
                 +L ++  E               RI PP+  +++D ++    +   +S
Sbjct: 351 QLKAAGLLCKETHE------------NVIRIAPPLVISEEDLEWAFQKIKAVLS 392

>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From Deinococcus Radiodurans Length = 430

Iteration: 1
 Score =  128 bits (322), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 168/350 (48%), Gaps = 23/350 (6%)
Query: 71  SIFHYYQKPLNI-VEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ 129
           ++F+   KP  + V G+  +L+D+ GRRYLD  +G +  + GH   +V   +  Q+  L 
Sbjct: 3   NVFYRSSKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLP 62
Query: 130 HA-TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARL------STGNL 182
               + +    + ++A  LA  +       + V+ G+EA E A+ +AR         G  
Sbjct: 63  FVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRF 122
Query: 183 GMIALRNAYHGGSSGTI---GLTALNTWKYPIPQGEIH-HVVNPDPYHGSFGSDAARYAQ 238
            +I    +YHG S G++   G+ A      P+ + E    +  PDP       + A  A+
Sbjct: 123 KVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPAR-----NGAEDAE 177
Query: 239 DLQDHIDFGTSGKVAGFIAETIQGVG-GAVELAPGYLKLVYDIVRKAGGVCIADEVQTGF 297
            L+  ++      VA F+AE + G    A+  APGY + V DI  +AG + IADEV +G 
Sbjct: 178 GLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGM 237
Query: 298 GRTGSHYWGFETQGVIPDIVTMAKGIGNGL-PLGAVVTTPEI-ANVMAQKIQFN---TFG 352
           GR GS        GV PDI  + KG+  G  PL  ++  P++   VM     F    T+ 
Sbjct: 238 GRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYA 297
Query: 353 GNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR 402
           G+PV  A GL+VL ++++E       + G+ LL  L+ LQ R   +  VR
Sbjct: 298 GHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVR 347

>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From Rhodobacter Sphaeroides Kd131 Length = 476

Iteration: 1
 Score =  124 bits (312), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 165/347 (47%), Gaps = 21/347 (6%)
Query: 89  YLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHA-IADFAEAL 147
           Y+  E+GRR +D  AG+     G+   ++++A+  Q+ +L +A+  Y+  +  A  AE +
Sbjct: 47  YVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPWYMATSPAARLAEKI 106
Query: 148 ASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRNAYHGGSSGTIGL 201
           A+  PG+L  ++F   G+ A + A+  +      LG      +I   + YHG ++ T   
Sbjct: 107 ATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAAC 166
Query: 202 TA-LNTW-KYPIPQGEIHHVVNPDPYHGSFGSDAA---RYAQDLQDHIDFGTSGKVAGFI 256
           T     W  + I Q  I  + +P+P H    S  A      Q+ +D I+      +A F+
Sbjct: 167 TGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFL 226
Query: 257 AETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDI 316
           AE I   GG +    GY      I  K   + I+DEV TGFGR G  +   +  GV+PDI
Sbjct: 227 AEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDI 286
Query: 317 VTMAKGIGNG-LPLGAVVTT----PEIANVMAQKIQFN---TFGGNPVCSAGGLAVLRVI 368
           +T AKG+ +G +PLG +  +      I+   A+   F    T+   PV  A  LA + ++
Sbjct: 287 ITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELM 346
Query: 369 DKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTD 415
           ++E       ++  +    L +L++    + + R  GL+  ++ + D
Sbjct: 347 EREGIVDQAREMADYFAAALASLRDLPG-VAETRSVGLVGCVQCLLD 392

>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Argd) From Campylobacter Jejuni Length = 395

Iteration: 1
 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 160/343 (46%), Gaps = 26/343 (7%)
Query: 78  KPLNIVEGKMQ--YLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY 135
           K  +IV  K Q  YLFD+  ++YLD  +GI   + G+ H      I  Q   L H + +Y
Sbjct: 16  KRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLY 75
Query: 136 LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGM-----IALRNA 190
            +  IA  A A        L+ V+F NSGTE+ E A   AR    N G+     IA +++
Sbjct: 76  YNENIA--AAAKNLAKASALERVFFTNSGTESIEGAXKTARKYAFNKGVKGGQFIAFKHS 133
Query: 191 YHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG 250
           +HG + G + LTA   ++ P             P     G   A+Y  D+   ++   + 
Sbjct: 134 FHGRTLGALSLTANEKYQKPFK-----------PLIS--GVKFAKY-NDISS-VEKLVNE 178
Query: 251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ 310
           K    I E++QG GG       + K +  +  +   + IADE+Q G GR+G  ++ +E  
Sbjct: 179 KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGXGRSGK-FFAYEHA 237
Query: 311 GVIPDIVTMAKGIGNGLPLGAVVTTPEIA-NVMAQKIQFNTFGGNPVCSAGGLAVLRVID 369
            ++PDI T AK +G GL +GA V   ++A N +      +T+GGNP+  AG  AV  +  
Sbjct: 238 QILPDIXTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFK 297
Query: 370 KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMEL 412
           +E+   +   +  +L   L  L    D     +G G   G+ L
Sbjct: 298 EEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFXQGLSL 340

>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound 7,8- Diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448

Iteration: 1
 Score =  122 bits (306), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 112/414 (27%), Positives = 182/414 (43%), Gaps = 49/414 (11%)
Query: 58  DQVFQKRKQFLGP--SIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHP 115
           D + + +K    P   +  Y + PL I  G    + D NG+ Y D F+ +     GH   
Sbjct: 4   DLIEKSKKHLWLPFTQMKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKK 63
Query: 116 DVLNAIFEQSKLLQHATTIYLHHAIA-DFAEALASKMPGNLKVVYFVNSGTEANELAMLM 174
           ++ +AI +Q   + H+T + + +  A   AE L    P  L  V++ +SG EA E+A+ M
Sbjct: 64  ELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKM 123
Query: 175 ARLSTGNLG------MIALRNAYHGGSSGTIGLTALN------------TWKYPIPQGEI 216
           A     N+G       IA++N YHG + G + + ++             ++K PIP    
Sbjct: 124 AFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYR 183
Query: 217 HHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKL 276
               +PD        + A+  ++  + I        A  I   +QG  G + +  GYL  
Sbjct: 184 SESGDPDECRDQXLRELAQLLEEHHEEI-------AALSIESMVQGASGMIVMPEGYLAG 236
Query: 277 VYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTT 335
           V ++      + I DEV TGFGRTG  +   E + V PD++   KGI  G LP+     T
Sbjct: 237 VRELCTTYDVLMIVDEVATGFGRTGKMF-ACEHENVQPDLMAAGKGITGGYLPIAVTFAT 295
Query: 336 PEIANVMAQKIQF-------NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGS--HLLG 386
            +I        +        +++ GN +  A  L  L + + E      A+     H L 
Sbjct: 296 EDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFL- 354
Query: 387 RLRTLQERHDI--IGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFE---KLRE 435
               LQ+ H +  +GD+R  G M G ELV  ++ K P  A+  + ++   K+RE
Sbjct: 355 ----LQDLHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRE 404

>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448

Iteration: 1
 Score =  122 bits (305), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 112/414 (27%), Positives = 182/414 (43%), Gaps = 49/414 (11%)
Query: 58  DQVFQKRKQFLGP--SIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHP 115
           D + + +K    P   +  Y + PL I  G    + D NG+ Y D F+ +     GH   
Sbjct: 4   DLIEKSKKHLWLPFTQMKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKK 63
Query: 116 DVLNAIFEQSKLLQHATTIYLHHAIA-DFAEALASKMPGNLKVVYFVNSGTEANELAMLM 174
           ++ +AI +Q   + H+T + + +  A   AE L    P  L  V++ +SG EA E+A+ M
Sbjct: 64  ELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKM 123
Query: 175 ARLSTGNLG------MIALRNAYHGGSSGTIGLTALN------------TWKYPIPQGEI 216
           A     N+G       IA++N YHG + G + + ++             ++K PIP    
Sbjct: 124 AFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYR 183
Query: 217 HHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKL 276
               +PD        + A+  ++  + I        A  I   +QG  G + +  GYL  
Sbjct: 184 SESGDPDECRDQCLRELAQLLEEHHEEI-------AALSIESMVQGASGMIVMPEGYLAG 236
Query: 277 VYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTT 335
           V ++      + I DEV TGFGRTG  +   E + V PD++   KGI  G LP+     T
Sbjct: 237 VRELCTTYDVLMIVDEVATGFGRTGKMF-ACEHENVQPDLMAAGKGITGGYLPIAVTFAT 295
Query: 336 PEIANVMAQKIQF-------NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGS--HLLG 386
            +I        +        +++ GN +  A  L  L + + E      A+     H L 
Sbjct: 296 EDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFL- 354
Query: 387 RLRTLQERHDI--IGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFE---KLRE 435
               LQ+ H +  +GD+R  G M G ELV  ++ K P  A+  + ++   K+RE
Sbjct: 355 ----LQDLHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRE 404

>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate Aminotransferase Length = 449

Iteration: 1
 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 168/363 (46%), Gaps = 26/363 (7%)
Query: 74  HYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT 133
           ++ + P  IV  +  +L D+ GR+  D+ +G+ T   GH   ++  A+ +Q   L ++  
Sbjct: 28  NFLRDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPG 87
Query: 134 IYLHHAIA-DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARL------STGNLGMIA 186
               H ++   AE +    PGNL  V+F +SG+E    A+ M R             MI 
Sbjct: 88  FQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIG 147
Query: 187 LRNAYHGGSSGTIGLTALNTWK--YPIPQGEIHHVVNPDPYHGSFGSDAAR-----YAQD 239
               YHG +     L  +N  +  +  P  ++ H+ +      ++     +      A +
Sbjct: 148 RARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADE 207
Query: 240 LQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGR 299
           L   I+   +  +A    E + G  G +    GYLK   +I  +   + + DEV TGFGR
Sbjct: 208 LLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGR 267
Query: 300 TGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK------IQF---N 349
           TGS + G ++ GV PD++ +AK + NG +P+GAV+ + EI      +      ++F    
Sbjct: 268 TGSMF-GADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGY 326
Query: 350 TFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVG 409
           T+  +PV  A GLA L ++ KE      A+V  H    L  ++   ++I D+R  GL   
Sbjct: 327 TYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVI-DIRNFGLAGA 385
Query: 410 MEL 412
           +++
Sbjct: 386 IQI 388

>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate Semialdehyde Aminotransferase Length = 434

Iteration: 1
 Score =  108 bits (269), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 102/332 (30%), Positives = 145/332 (43%), Gaps = 33/332 (9%)
Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIF---EQSKLLQHATTIY 135
           P+    GK  Y +D +G +Y+D  A    +  GH HP +  AI    E   L    T + 
Sbjct: 38  PIAXERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYGTPTALE 97
Query: 136 LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGS 195
           +      FA+ L    P  L  V FVNSGTEA    + +AR  TG   +      YHG S
Sbjct: 98  VK-----FAKXLKEAXPA-LDKVRFVNSGTEAVXTTIRVARAYTGRTKIXKFAGCYHGHS 151
Query: 196 SGTI-----GLTALNTWKYP-IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS 249
              +     G + L T     +PQ     V+   P++     +  + A D   H      
Sbjct: 152 DLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITV-PFNNV---ETLKEALDKWGH------ 201
Query: 250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET 309
            +VA  + E I G  G VE  PG+L+ V ++V +AG + I DEV T F      Y G + 
Sbjct: 202 -EVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFX---YGGAQD 257
Query: 310 -QGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMA---QKIQFNTFGGNPVCSAGGLAVL 365
             GV PD+  +   IG GLP+GA     EI   +A      Q  T  GNP   A G+A L
Sbjct: 258 LLGVTPDLTALGXVIGGGLPIGAYGGKKEIXEQVAPLGPAYQAGTXAGNPASXASGIACL 317
Query: 366 RVIDKERRQAHCADVGSHLLGRLRTLQERHDI 397
            V+ +E       ++G+ L   +     +H+I
Sbjct: 318 EVLQQEGLYEKLDELGATLEKGILEQAAKHNI 349

>pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase With Pyridoxal Phosphate Cofactor. Length = 429

Iteration: 1
 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 155/346 (44%), Gaps = 33/346 (9%)
Query: 82  IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIA 141
           +V  +   L   +GRR +D  +       G+ HP +  A+  Q   + H     + HA A
Sbjct: 29  VVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGEITHAPA 88
Query: 142 -DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG-----MIALRNAYHGGS 195
            +    L +  P  L+ V+  +SG+ A E+AM MA       G      +  RN YHG +
Sbjct: 89  IELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWDAKGEARDRFLTFRNGYHGDT 148
Query: 196 SGTIGL-----TALNTWKYPIPQGEIHHVVNPDPYHGSFGS----DAARYAQDLQDHIDF 246
            G + +     +  + WK  +P+    ++  P P     G     D   +A+ +  H   
Sbjct: 149 FGAMSVCDPDNSMHSLWKGYLPE----NLFAPAPQSRMDGEWDERDMVGFARLMAAH--- 201
Query: 247 GTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW 305
               ++A  I E I QG GG     P +LK +  I  + G + IADE+ TGFGRTG  + 
Sbjct: 202 --RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF- 258
Query: 306 GFETQGVIPDIVTMAKGI-GNGLPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSA 359
             E   + PDI+ + K + G  + L A +TT E+A  ++       +   TF GNP+  A
Sbjct: 259 ACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISDGEAGCFMHGPTFMGNPLACA 318
Query: 360 GGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG 405
              A L +++    Q   AD+   L  +L   ++  +++ DVR  G
Sbjct: 319 AANASLAILESGDWQQQVADIEVQLREQLAPARDA-EMVADVRVLG 363

>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 155/346 (44%), Gaps = 33/346 (9%)
Query: 82  IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIA 141
           +V  +   L   +GRR +D  +       G+ HP +  A+  Q   + H     + HA A
Sbjct: 29  VVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPA 88
Query: 142 -DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG-----MIALRNAYHGGS 195
            +    L +  P  L+ V+  +SG+ A E+AM MA       G      +  RN YHG +
Sbjct: 89  IELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDT 148
Query: 196 SGTIGL-----TALNTWKYPIPQGEIHHVVNPDPYHGSFGS----DAARYAQDLQDHIDF 246
            G + +     +  + WK  +P+    ++  P P     G     D   +A+ +  H   
Sbjct: 149 FGAMSVCDPDNSMHSLWKGYLPE----NLFAPAPQSRMDGEWDERDMVGFARLMAAH--- 201
Query: 247 GTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW 305
               ++A  I E I QG GG     P +LK +  I  + G + IADE+ TGFGRTG  + 
Sbjct: 202 --RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF- 258
Query: 306 GFETQGVIPDIVTMAKGI-GNGLPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSA 359
             E   + PDI+ + K + G  + L A +TT E+A  ++       +   TF GNP+  A
Sbjct: 259 ACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACA 318
Query: 360 GGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG 405
              A L +++    Q   AD+   L  +L   ++  +++ DVR  G
Sbjct: 319 AANASLAILESGDWQQQVADIEVQLREQLAPARDA-EMVADVRVLG 363

>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase In Complex With 7-Keto-8-Aminopelargonic Acid Length = 429

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 155/346 (44%), Gaps = 33/346 (9%)
Query: 82  IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIA 141
           +V  +   L   +GRR +D  +       G+ HP +  A+  Q   + H     + HA A
Sbjct: 29  VVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPA 88
Query: 142 -DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG-----MIALRNAYHGGS 195
            +    L +  P  L+ V+  +SG+ A E+AM MA       G      +  RN YHG +
Sbjct: 89  IELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDT 148
Query: 196 SGTIGL-----TALNTWKYPIPQGEIHHVVNPDPYHGSFGS----DAARYAQDLQDHIDF 246
            G + +     +  + WK  +P+    ++  P P     G     D   +A+ +  H   
Sbjct: 149 FGAMSVCDPDNSMHSLWKGYLPE----NLFAPAPQSRMDGEWDERDMVGFARLMAAH--- 201
Query: 247 GTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW 305
               ++A  I E I QG GG     P +LK +  I  + G + IADE+ TGFGRTG  + 
Sbjct: 202 --RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF- 258
Query: 306 GFETQGVIPDIVTMAKGI-GNGLPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSA 359
             E   + PDI+ + K + G  + L A +TT E+A  ++       +   TF GNP+  A
Sbjct: 259 ACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACA 318
Query: 360 GGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG 405
              A L +++    Q   AD+   L  +L   ++  +++ DVR  G
Sbjct: 319 AANASLAILESGDWQQQVADIEVQLREQLAPARDA-EMVADVRVLG 363

>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 98.2 bits (243), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 154/346 (44%), Gaps = 33/346 (9%)
Query: 82  IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIA 141
           +V  +   L   +GRR +D  +       G+ HP +  A+  Q   + H     + HA A
Sbjct: 29  VVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPA 88
Query: 142 -DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG-----MIALRNAYHGGS 195
            +    L +  P  L+ V+  +SG+ A E+AM MA       G      +  RN YHG +
Sbjct: 89  IELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGNT 148
Query: 196 SGTIGL-----TALNTWKYPIPQGEIHHVVNPDPYHGSFGS----DAARYAQDLQDHIDF 246
            G + +     +  + WK  +P+    ++  P P     G     D   +A+ +  H   
Sbjct: 149 FGAMSVCDPDNSMHSLWKGYLPE----NLFAPAPQSRMDGEWDERDMVGFARLMAAH--- 201
Query: 247 GTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW 305
               ++A  I E I QG GG     P +LK +  I  + G + IADE+ TGFGRTG  + 
Sbjct: 202 --RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF- 258
Query: 306 GFETQGVIPDIVTMAKGI-GNGLPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSA 359
             E   + PDI+ +   + G  + L A +TT E+A  ++       +   TF GNP+  A
Sbjct: 259 ACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACA 318
Query: 360 GGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG 405
              A L +++    Q   AD+   L  +L   ++  +++ DVR  G
Sbjct: 319 AANASLAILESGDWQQQVADIEVQLREQLAPARDA-EMVADVRVLG 363

>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 154/346 (44%), Gaps = 33/346 (9%)
Query: 82  IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIA 141
           +V  +   L   +GRR +D  +       G+ HP +  A+  Q   + H     + HA A
Sbjct: 29  VVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPA 88
Query: 142 -DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG-----MIALRNAYHGGS 195
            +    L +  P  L+ V+  +SG+ A E+AM MA       G      +  RN YHG +
Sbjct: 89  IELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDT 148
Query: 196 SGTIGL-----TALNTWKYPIPQGEIHHVVNPDPYHGSFGS----DAARYAQDLQDHIDF 246
            G + +     +  + WK  +P+    ++  P P     G     D   +A+ +  H   
Sbjct: 149 FGAMSVCDPDNSMHSLWKGYLPE----NLFAPAPQSRMDGEWDERDMVGFARLMAAH--- 201
Query: 247 GTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW 305
               ++A  I E I QG GG     P +LK +  I  + G + IADE+ TGFGRTG  + 
Sbjct: 202 --RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF- 258
Query: 306 GFETQGVIPDIVTMAKGI-GNGLPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSA 359
             E   + PDI+ +   + G  + L A +TT E+A  ++       +   TF GNP+  A
Sbjct: 259 ACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACA 318
Query: 360 GGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG 405
              A L +++    Q   AD+   L  +L   ++  +++ DVR  G
Sbjct: 319 AANASLAILESGDWQQQVADIEVQLREQLAPARDA-EMVADVRVLG 363

>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Aeropyrum Pernix Length = 434

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 149/337 (44%), Gaps = 38/337 (11%)
Query: 53  TGPSADQVFQKRKQFL-----GPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVT 107
           +G  +  +F++ K+        P        P  +  G+  YL+  +G R +D       
Sbjct: 8   SGEKSRMLFERTKELFPGGVNSPVRAAVKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGP 67
Query: 108 VSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLK---VVYFVNSG 164
           +  GH HP VL A+ E           +L+ A  +    LA K+ G +K   ++ FVNSG
Sbjct: 68  LILGHKHPRVLEAVEEA------LARGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSG 121
Query: 165 TEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQG-----EIHHV 219
           TEA   A+ +AR  TG   ++     YHG     +         Y +P        +  +
Sbjct: 122 TEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARL 181
Query: 220 VNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYD 279
               PY+     D     +   ++ D     ++AG I E +    G +     +L  +  
Sbjct: 182 TLVTPYN-----DVEALERVFAEYGD-----RIAGVIVEPVIANAGVIPPRREFLAALQR 231
Query: 280 IVRKAGGVCIADEVQTGF--GRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPE 337
           + R++G + I DEV TGF  G  G+  + F  +G   DI+ + K IG G P+GAV  + E
Sbjct: 232 LSRESGALLILDEVVTGFRLGLEGAQGY-FNIEG---DIIVLGKIIGGGFPVGAVAGSRE 287
Query: 338 IANVMA-QKIQFN--TFGGNPVCSAGGLAVLRVIDKE 371
           + +++  Q   FN  TF  +P+  A GLA L+ +++E
Sbjct: 288 VMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEE 324

>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 154/346 (44%), Gaps = 33/346 (9%)
Query: 82  IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIA 141
           +V  +   L   +GRR +D  +       G+ HP +  A+  Q   + H     + HA A
Sbjct: 29  VVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPA 88
Query: 142 -DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG-----MIALRNAYHGGS 195
            +    L +  P  L+ V+  +SG+ A E+AM MA       G      +  RN YHG +
Sbjct: 89  IELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDT 148
Query: 196 SGTIGL-----TALNTWKYPIPQGEIHHVVNPDPYHGSFGS----DAARYAQDLQDHIDF 246
            G + +     +  + WK  +P+    ++  P P     G     D   +A+ +  H   
Sbjct: 149 FGAMSVCDPDNSMHSLWKGYLPE----NLFAPAPQSRMDGEWDERDMVGFARLMAAH--- 201
Query: 247 GTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW 305
               ++A  I E I QG GG     P +LK +  I  + G + IADE+ TGFG TG  + 
Sbjct: 202 --RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGATGKLF- 258
Query: 306 GFETQGVIPDIVTMAKGI-GNGLPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSA 359
             E   + PDI+ + K + G  + L A +TT E+A  ++       +   TF GNP+  A
Sbjct: 259 ACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACA 318
Query: 360 GGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG 405
              A L +++    Q   AD+   L  +L   ++  +++ DVR  G
Sbjct: 319 AANASLAILESGDWQQQVADIEVQLREQLAPARDA-EMVADVRVLG 363

>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 154/346 (44%), Gaps = 33/346 (9%)
Query: 82  IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIA 141
           +V  +   L   +GRR +D  +       G+ HP +  A+  Q   + H     + HA A
Sbjct: 29  VVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPA 88
Query: 142 -DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG-----MIALRNAYHGGS 195
            +    L +  P  L+ V+  +SG+ A E+AM MA       G      +  RN YHG +
Sbjct: 89  IELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDT 148
Query: 196 SGTIGL-----TALNTWKYPIPQGEIHHVVNPDPYHGSFGS----DAARYAQDLQDHIDF 246
            G + +     +  + WK  +P+    ++  P P     G     D   +A+ +  H   
Sbjct: 149 FGAMSVCDPDNSMHSLWKGYLPE----NLFAPAPQSRMDGEWDERDMVGFARLMAAH--- 201
Query: 247 GTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW 305
               ++A  I E I QG GG     P +LK +  I  + G + IADE+ TGFG+TG  + 
Sbjct: 202 --RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGKTGKLF- 258
Query: 306 GFETQGVIPDIVTMAKGI-GNGLPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSA 359
             E   + PDI+ +   + G  + L A +TT E+A  ++       +   TF GNP+  A
Sbjct: 259 ACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACA 318
Query: 360 GGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG 405
              A L +++    Q   AD+   L  +L   ++  +++ DVR  G
Sbjct: 319 AANASLAILESGDWQQQVADIEVQLREQLAPARDA-EMVADVRVLG 363

>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 154/346 (44%), Gaps = 33/346 (9%)
Query: 82  IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIA 141
           +V  +   L   +GRR +D  +       G+ HP +  A+  Q   + H     + HA A
Sbjct: 29  VVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPA 88
Query: 142 -DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG-----MIALRNAYHGGS 195
            +    L +  P  L+ V+  +SG+ A E+AM MA       G      +  RN +HG +
Sbjct: 89  IELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGFHGDT 148
Query: 196 SGTIGL-----TALNTWKYPIPQGEIHHVVNPDPYHGSFGS----DAARYAQDLQDHIDF 246
            G + +     +  + WK  +P+    ++  P P     G     D   +A+ +  H   
Sbjct: 149 FGAMSVCDPDNSMHSLWKGYLPE----NLFAPAPQSRMDGEWDERDMVGFARLMAAH--- 201
Query: 247 GTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW 305
               ++A  I E I QG GG     P +LK +  I  + G + IADE+ TGFGRTG  + 
Sbjct: 202 --RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF- 258
Query: 306 GFETQGVIPDIVTMAKGI-GNGLPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSA 359
             E   + PDI+ +   + G  + L A +TT E+A  ++       +   TF GNP+  A
Sbjct: 259 ACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACA 318
Query: 360 GGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG 405
              A L +++    Q   AD+   L  +L   ++  +++ DVR  G
Sbjct: 319 AANASLAILESGDWQQQVADIEVQLREQLAPARDA-EMVADVRVLG 363

>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase (Aminotransferase, Wild-Type Form) Length = 432

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 141/302 (46%), Gaps = 29/302 (9%)
Query: 78  KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH 137
           +P+     K  Y +D +G RY+D         CGH HP+V+ A+      ++  T+    
Sbjct: 39  QPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEAL---KVAMEKGTSFGAP 95
Query: 138 HAIAD-FAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSS 196
            A+ +  AE +   +P ++++V FVNSGTEA    + + R  TG   +I     YHG + 
Sbjct: 96  CALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHAD 154
Query: 197 GTI-----GLTALNTWKYP-IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG 250
             +     G+  L     P +P+    + +   PY+    +  A +A++          G
Sbjct: 155 MFLVKAGSGVATLGLPSSPGVPKKTTANTLT-TPYN-DLEAVKALFAEN---------PG 203
Query: 251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ 310
           ++AG I E I G  G +    G+L+ + +I  +   + + DEV TGF      Y G + +
Sbjct: 204 EIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIA---YGGVQEK 260
Query: 311 -GVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGLAVLR 366
            GV PD+ T+ K IG GLP+GA     EI  ++A      Q  T  GNP+    G+  L 
Sbjct: 261 FGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLE 320
Query: 367 VI 368
           ++
Sbjct: 321 LL 322

>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam Length = 427

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 141/302 (46%), Gaps = 29/302 (9%)
Query: 78  KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH 137
           +P+     K  Y +D +G RY+D         CGH HP+V+ A+      ++  T+    
Sbjct: 34  QPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEAL---KVAMEKGTSFGAP 90
Query: 138 HAIAD-FAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSS 196
            A+ +  AE +   +P ++++V FVNSGTEA    + + R  TG   +I     YHG + 
Sbjct: 91  CALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHAD 149
Query: 197 GTI-----GLTALNTWKYP-IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG 250
             +     G+  L     P +P+    + +   PY+    +  A +A++          G
Sbjct: 150 MFLVKAGSGVATLGLPSSPGVPKKTTANTLT-TPYN-DLEAVKALFAEN---------PG 198
Query: 251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ 310
           ++AG I E I G  G +    G+L+ + +I  +   + + DEV TGF      Y G + +
Sbjct: 199 EIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIA---YGGVQEK 255
Query: 311 -GVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGLAVLR 366
            GV PD+ T+ K IG GLP+GA     EI  ++A      Q  T  GNP+    G+  L 
Sbjct: 256 FGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLE 315
Query: 367 VI 368
           ++
Sbjct: 316 LL 317

>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam Length = 432

Iteration: 1
 Score = 95.5 bits (236), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 141/302 (46%), Gaps = 29/302 (9%)
Query: 78  KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH 137
           +P+     K  Y +D +G RY+D         CGH HP+V+ A+      ++  T+    
Sbjct: 39  QPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEAL---KVAMEKGTSFGAP 95
Query: 138 HAIAD-FAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSS 196
            A+ +  AE +   +P ++++V FVNSGTEA    + + R  TG   +I     YHG + 
Sbjct: 96  CALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHAD 154
Query: 197 GTI-----GLTALNTWKYP-IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG 250
             +     G+  L     P +P+    + +   PY+    +  A +A++          G
Sbjct: 155 MFLVKAGSGVATLGLPSSPGVPKKTTANTLT-TPYN-DLEAVKALFAEN---------PG 203
Query: 251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ 310
           ++AG I E I G  G +    G+L+ + +I  +   + + DEV TGF      Y G + +
Sbjct: 204 EIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIA---YGGVQEK 260
Query: 311 -GVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGLAVLR 366
            GV PD+ T+ K IG GLP+GA     EI  ++A      Q  T  GNP+    G+  L 
Sbjct: 261 FGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLE 320
Query: 367 VI 368
           ++
Sbjct: 321 LL 322

>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version Length = 427

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 141/302 (46%), Gaps = 29/302 (9%)
Query: 78  KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH 137
           +P+     K  Y +D +G RY+D         CGH HP+V+ A+      ++  T+    
Sbjct: 34  QPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEAL---KVAMEKGTSFGAP 90
Query: 138 HAIAD-FAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSS 196
            A+ +  AE +   +P ++++V FVNSGTEA    + + R  TG   +I     YHG + 
Sbjct: 91  CALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHAD 149
Query: 197 GTI-----GLTALNTWKYP-IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG 250
             +     G+  L     P +P+    + +   PY+    +  A +A++          G
Sbjct: 150 MFLVKAGSGVATLGLPSSPGVPKKTTANTLT-TPYN-DLEAVKALFAEN---------PG 198
Query: 251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ 310
           ++AG I E I G  G +    G+L+ + +I  +   + + DEV TGF      Y G + +
Sbjct: 199 EIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIA---YGGVQEK 255
Query: 311 -GVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGLAVLR 366
            GV PD+ T+ K IG GLP+GA     EI  ++A      Q  T  GNP+    G+  L 
Sbjct: 256 FGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLE 315
Query: 367 VI 368
           ++
Sbjct: 316 LL 317

>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus Hb8 Length = 424

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 154/350 (44%), Gaps = 47/350 (13%)
Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH 138
           P  +V G+  Y++D +G RYLD       +  GH HP VL  + E    L+   T     
Sbjct: 35  PPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRET---LERGLTF---G 88
Query: 139 AIADFAEALASKMPGN---LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG-- 193
           A +    ALA K+      + +V FVNSGTEA   A+ +AR  TG   ++  R  YHG  
Sbjct: 89  APSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHA 148
Query: 194 ------GSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG 247
                   SG + L   ++   P    ++  V+  +        D     + L+   +  
Sbjct: 149 DGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYN--------DPEGLREVLKRRGE-- 198
Query: 248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGF-----GRTGS 302
              ++A  I E + G  G +     +LK +++  +  G + IADEV TGF     G T  
Sbjct: 199 ---EIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLLIADEVMTGFRLAFGGAT-- 252
Query: 303 HYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMA---QKIQFNTFGGNPVCSA 359
                E  G+ PD+VT+ K +G GLP  A     EI   +A      Q  T  GNP+  A
Sbjct: 253 -----ELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMA 307
Query: 360 GGLAVLRVIDKER-RQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMV 408
            GLA L ++++     A+  D+G+ L   L+ + +   +   V   G M+
Sbjct: 308 AGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMI 357

>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam Length = 427

Iteration: 1
 Score = 94.7 bits (234), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 141/302 (46%), Gaps = 29/302 (9%)
Query: 78  KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH 137
           +P+     K  Y +D +G RY+D         CGH HP+V+ A+      ++  T+    
Sbjct: 34  QPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEAL---KVAMEKGTSFGAP 90
Query: 138 HAIAD-FAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSS 196
            A+ +  AE +   +P ++++V FVNSGTEA    + + R  TG   +I     YHG + 
Sbjct: 91  CALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHAD 149
Query: 197 GTI-----GLTALNTWKYP-IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG 250
             +     G+  L     P +P+    + +   PY+    +  A +A++          G
Sbjct: 150 MFLVKAGSGVATLGLPSSPGVPKKTTANTLT-TPYN-DLEAVKALFAEN---------PG 198
Query: 251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ 310
           ++AG I E I G  G +    G+L+ + +I  +   + + DEV TGF      Y G + +
Sbjct: 199 EIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIA---YGGVQEK 255
Query: 311 -GVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGLAVLR 366
            GV PD+ T+ K IG GLP+GA     EI  ++A      Q  T  GNP+    G+  L 
Sbjct: 256 FGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLE 315
Query: 367 VI 368
           ++
Sbjct: 316 LL 317

>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde Aminotransferase Complexed With Pyridoxamine-5'-Phosphate From Bacillus Subtilis Length = 438

Iteration: 1
 Score = 91.7 bits (226), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 153/344 (44%), Gaps = 32/344 (9%)
Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH 138
           P+ +  GK   +FD +G  Y+D       +  GH +  V+ ++    K+ ++ T+     
Sbjct: 44  PIFMERGKGSKIFDIDGNEYIDYVLSWGPLILGHTNDRVVESL---KKVAEYGTSFGAPT 100
Query: 139 AIA-DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG-GSS 196
            +  + A+ +  ++P ++++V  V+SGTEA   A+ +AR  TG   ++     YHG G S
Sbjct: 101 EVENELAKLVIDRVP-SVEIVRMVSSGTEATMSALRLARGYTGRNKILKFEGCYHGHGDS 159
Query: 197 GTI----GLTALNTWKYP-IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQD-HIDFGTSG 250
             I    G+  L     P +P+G   + +   PY+            DL+   + F   G
Sbjct: 160 LLIKAGSGVATLGLPDSPGVPEGIAKNTITV-PYN------------DLESVKLAFQQFG 206
Query: 251 K-VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET 309
           + +AG I E + G  G V    G+L+ + DI  + G + I DEV TGF    +   G+  
Sbjct: 207 EDIAGVIVEPVAGNMGVVPPQEGFLQGLRDITEQYGSLLIFDEVMTGFRVDYNCAQGY-- 264
Query: 310 QGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGLAVLR 366
            GV PD+  + K IG GLP+GA     EI   +A      Q  T  GNP+    GL  L+
Sbjct: 265 FGVTPDLTCLGKVIGGGLPVGAYGGKAEIMEQIAPSGPIYQAGTLSGNPLAMTAGLETLK 324
Query: 367 VIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM 410
            +  +  +      G  L   +    E H I       G M+G 
Sbjct: 325 QLTPDSYKNFIKK-GDRLEEGISKAAEAHGIPHTFNRAGSMIGF 367

>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis With Bound Pyridoxal 5'phosphate Length = 429

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 154/351 (43%), Gaps = 44/351 (12%)
Query: 78  KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH 137
            PL    GK   ++D +G  Y+D       +  GH +  V+ A+     + +  T+    
Sbjct: 35  NPLFXERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEAL---KAVAERGTSFGAP 91
Query: 138 HAIAD-FAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG-GS 195
             I +  A+ +  ++P ++++V  VNSGTEA   A+ +AR  TG   ++     YHG G 
Sbjct: 92  TEIENKLAKLVIERVP-SIEIVRXVNSGTEATXSALRLARGYTGRNKILKFIGCYHGHGD 150
Query: 196 SGTI----GLTALNTWKYP-IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG 250
           S  I    G+  L     P +P+G   + +    Y+     ++ +YA +      FG   
Sbjct: 151 SLLIKAGSGVATLGLPDSPGVPEGVAKNTITV-AYNDL---ESVKYAFE-----QFGDD- 200
Query: 251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG---RTGSHYWGF 307
            +A  I E + G  G V   PG+L+ + ++  + G + I DEV TGF      G  Y+  
Sbjct: 201 -IACVIVEPVAGNXGVVPPQPGFLEGLREVTEQNGALLIFDEVXTGFRVAYNCGQGYY-- 257
Query: 308 ETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGLAV 364
              GV PD+  + K IG GLP+GA     EI   +A      Q  T  GNP+  A G   
Sbjct: 258 ---GVTPDLTCLGKVIGGGLPVGAYGGKAEIXRQVAPSGPIYQAGTLSGNPLAXAAGYET 314
Query: 365 LRVIDKE-----RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM 410
           L  +  E      R+A   + G      LR   E+H I   +   G  +G+
Sbjct: 315 LVQLTPESYVEFERKAEXLEAG------LRKAAEKHGIPHHINRAGSXIGI 359

>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis 7,8-Diaminopelargonic Acid Synthase In Complex With Substrate Analog Sinefungin Length = 462

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 157/357 (43%), Gaps = 30/357 (8%)
Query: 99  LDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL-HHAIADFAEALASKMPGNLKV 157
           LDA +   T   GH HP +  A+  Q +++ H     L H   A  A+ L    P  L  
Sbjct: 83  LDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDT 142
Query: 158 VYFVNSGTEANELAMLMA------RLSTGNLGMIALRNAYHGGSSGTIGLT----ALNTW 207
           V+F +SG+ + E+A  MA      R   G   ++  R  YHG +   + +      +++ 
Sbjct: 143 VFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL 202
Query: 208 KYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAE-TIQGVGGA 266
              +   ++     P  Y  ++   +A +   L  H     +G++A  + E  +QG GG 
Sbjct: 203 WTDVLAAQVFAPQVPRDYDPAY---SAAFEAQLAQH-----AGELAAVVVEPVVQGAGGM 254
Query: 267 VELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG 326
               P YL  + DI R+   + I DE+ TGFGRTG+ +   +  GV PDI+ + K +  G
Sbjct: 255 RFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALF-AADHAGVSPDIMCVGKALTGG 313
Query: 327 -LPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADV 380
            L L A + T ++A+ ++       ++  TF  NP+  A  +A + ++  +  +    ++
Sbjct: 314 YLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQDWRTRITEL 373
Query: 381 GSHLLGRLRTLQERHDIIGDVRGRGLMVGMEL--VTDRKEKTPAKAETAVLFEKLRE 435
            + L   L T +     + DVR  G +  +E     D    TPA  +  V     R 
Sbjct: 374 AAGLTAGLDTARAL-PAVTDVRVCGAIGVIECDRPVDLAVATPAALDRGVWLRPFRN 429

>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid Synthase In Mycobacterium Tuberculosis Length = 437

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 157/357 (43%), Gaps = 30/357 (8%)
Query: 99  LDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL-HHAIADFAEALASKMPGNLKV 157
           LDA +   T   GH HP +  A+  Q +++ H     L H   A  A+ L    P  L  
Sbjct: 58  LDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDT 117
Query: 158 VYFVNSGTEANELAMLMA------RLSTGNLGMIALRNAYHGGSSGTIGLT----ALNTW 207
           V+F +SG+ + E+A  MA      R   G   ++  R  YHG +   + +      +++ 
Sbjct: 118 VFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL 177
Query: 208 KYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAE-TIQGVGGA 266
              +   ++     P  Y  ++   +A +   L  H     +G++A  + E  +QG GG 
Sbjct: 178 WTDVLAAQVFAPQVPRDYDPAY---SAAFEAQLAQH-----AGELAAVVVEPVVQGAGGM 229
Query: 267 VELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG 326
               P YL  + DI R+   + I DE+ TGFGRTG+ +   +  GV PDI+ + K +  G
Sbjct: 230 RFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALF-AADHAGVSPDIMCVGKALTGG 288
Query: 327 -LPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADV 380
            L L A + T ++A+ ++       ++  TF  NP+  A  +A + ++  +  +    ++
Sbjct: 289 YLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQDWRTRITEL 348
Query: 381 GSHLLGRLRTLQERHDIIGDVRGRGLMVGMEL--VTDRKEKTPAKAETAVLFEKLRE 435
            + L   L T +     + DVR  G +  +E     D    TPA  +  V     R 
Sbjct: 349 AAGLTAGLDTARAL-PAVTDVRVCGAIGVIECDRPVDLAVATPAALDRGVWLRPFRN 404

>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermosynechococcus Elongatus Length = 411

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 149/334 (44%), Gaps = 29/334 (8%)
Query: 78  KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH 137
           +P+     K  +++D +G +Y+D          GH HP+V++A+      L+  T+    
Sbjct: 18  QPIVFDHVKGAHIWDVDGNQYIDYVGSWGPAIVGHAHPEVIDAL---HAALEKGTSFGAP 74
Query: 138 HAIAD-FAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSS 196
             + +  AE + + +P ++++V FVNSGTEA    + + R  T    +I     YHG + 
Sbjct: 75  CLLENILAEMVIAAVP-SVEMVRFVNSGTEACMAVLRLMRAYTQREKVIKFEGCYHGHAD 133
Query: 197 GTI-----GLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGK 251
             +     G+  L     P             PY+     D    ++  + + +      
Sbjct: 134 MFLVKAGSGVATLGLPDSPGVPKATTAATLTAPYN-----DLEAVSRLFEQYPN-----D 183
Query: 252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ- 310
           +AG I E + G  G +    G+L+ + ++ ++ G + + DEV TGF      Y G + + 
Sbjct: 184 IAGVILEPVVGNAGFIPPDAGFLEGLRELTKQYGALLVFDEVMTGFRIA---YGGAQEKF 240
Query: 311 GVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGLAVLRV 367
           GV PD+ T+ K IG GLP+GA     EI  ++A      Q  T  GNP+    G+  L +
Sbjct: 241 GVTPDLTTLGKVIGGGLPVGAYGGRAEIMKMVAPAGPVYQAGTLSGNPLAMTAGIKTLEI 300
Query: 368 IDKERRQAHCADVGSHLL-GRLRTLQE-RHDIIG 399
           + +     H   +   L+ G L   +E  H++ G
Sbjct: 301 LSRPGSYEHLDRITGKLVQGLLDAAREFGHEVCG 334

>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase (Bioa) From Mycobacterium Tuberculosis, Pre-Reaction Complex With A 3,6- Dihydropyrid-2-One Heterocycle Inhibitor Length = 457

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 156/357 (43%), Gaps = 30/357 (8%)
Query: 99  LDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL-HHAIADFAEALASKMPGNLKV 157
           LDA +   T   GH HP +  A+  Q +++ H     L H   A  A+ L    P  L  
Sbjct: 78  LDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDT 137
Query: 158 VYFVNSGTEANELAMLMA------RLSTGNLGMIALRNAYHGGSSGTIGLT----ALNTW 207
           V+F +SG+ + E+A  MA      R   G   ++  R  YHG +   + +      +++ 
Sbjct: 138 VFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL 197
Query: 208 KYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAE-TIQGVGGA 266
              +   ++     P  Y  ++   +A +   L  H     +G++A  + E  +QG GG 
Sbjct: 198 WTDVLAAQVFAPQVPRDYDPAY---SAAFEAQLAQH-----AGELAAVVVEPVVQGAGGM 249
Query: 267 VELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG 326
               P YL  + DI R+   + I DE+ TGFGRTG+ +   +  GV PDI+ + K +  G
Sbjct: 250 RFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALF-AADHAGVSPDIMCVGKALTGG 308
Query: 327 -LPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADV 380
            L L A + T ++A+ ++       +   TF  NP+  A  +A + ++  +  +    ++
Sbjct: 309 YLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITEL 368
Query: 381 GSHLLGRLRTLQERHDIIGDVRGRGLMVGMEL--VTDRKEKTPAKAETAVLFEKLRE 435
            + L   L T +     + DVR  G +  +E     D    TPA  +  V     R 
Sbjct: 369 AAGLTAGLDTARAL-PAVTDVRVCGAIGVIECDRPVDLAVATPAALDRGVWLRPFRN 424

>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c Length = 449

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 164/377 (43%), Gaps = 50/377 (13%)
Query: 80  LNIVEGKMQYLFDE-NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA------T 132
           L++      YL D   GRRYLD F  + + + G   P +++     ++L+Q A      +
Sbjct: 37  LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 133 TIYLHHAIADFAEALASKMPGN--LKVVYFVNSGTEANELAMLMA-----RLSTGN---- 181
            +Y   A+A F E  A ++ G+  L  ++FV  G  A E A+  A     R +  +    
Sbjct: 97  DVY-SVAMARFVETFA-RVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDP 154
Query: 182 -LG--MIALRNAYHGGSSGTIGLTALN-TWKYPIPQGEIHHVVNPDPYHG---------- 227
            LG  ++ LR A+HG S  T+ LT    T     P+ +   +  P    G          
Sbjct: 155 ALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALE 214
Query: 228 SFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGV 287
           +     AR A + + H        +A F+AE IQG GG     P +   + ++  +   +
Sbjct: 215 AEALRQARAAFETRPH-------DIACFVAEPIQGAGGDRHFRPEFFAAMRELCDEFDAL 267
Query: 288 CIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIG-NGLPLGAVVTTPEIA-NVMAQK 345
            I DEVQTG G TG+  W ++   V PDIV   K     G+  G  V   E+A NV A  
Sbjct: 268 LIFDEVQTGCGLTGTA-WAYQQLDVAPDIVAFGKKTQVCGVMAGRRVD--EVADNVFAVP 324
Query: 346 IQFN-TFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHD-IIGDVRG 403
            + N T+GGN         +L VI+ E         G +L  RL  L      ++ D RG
Sbjct: 325 SRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRG 384
Query: 404 RGLMVGMELVT--DRKE 418
           RGLM    L T  DR E
Sbjct: 385 RGLMCAFSLPTTADRDE 401

>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The Internal Aldimine Form Length = 449

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 165/377 (43%), Gaps = 50/377 (13%)
Query: 80  LNIVEGKMQYLFDE-NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA------T 132
           L++      YL D   GRRYLD F  + + + G   P +++     ++L+Q A      +
Sbjct: 37  LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 133 TIYLHHAIADFAEALASKMPGN--LKVVYFVNSGTEANELAMLMA-----RLSTGN---- 181
            +Y   A+A F E  A ++ G+  L  ++FV  G  A E A+  A     R +  +    
Sbjct: 97  DVY-SVAMARFVETFA-RVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDP 154
Query: 182 -LG--MIALRNAYHGGSSGTIGLTALN-TWKYPIPQGEIHHVVNPDPYHG---------- 227
            LG  ++ LR A+HG S  T+ LT    T     P+ +   +  P    G          
Sbjct: 155 ALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALE 214
Query: 228 SFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGV 287
           +     AR A + + H        +A F+AE IQG GG     P +   + ++  +   +
Sbjct: 215 AEALRQARAAFETRPH-------DIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDAL 267
Query: 288 CIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIG-NGLPLGAVVTTPEIA-NVMAQK 345
            I DEVQTG G TG+  W ++   V PDIV   K     G+  G  V   E+A NV A  
Sbjct: 268 LIFDEVQTGCGLTGTA-WAYQQLDVAPDIVAFGKKTQVCGVMAGRRVD--EVADNVFAVP 324
Query: 346 IQFN-TFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTL-QERHDIIGDVRG 403
            + N T+GGN         +L VI+ E         G +L  RL  L  +   ++ D RG
Sbjct: 325 SRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRG 384
Query: 404 RGLMVGMELVT--DRKE 418
           RGLM    L T  DR E
Sbjct: 385 RGLMCAFSLPTTADRDE 401

>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig Length = 472

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 165/403 (40%), Gaps = 56/403 (13%)
Query: 54  GPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHC 113
           GP + ++ ++          H++    N  E +  YL D +G R LD ++ I ++  G+ 
Sbjct: 24  GPRSRELMKQLNIIQNAEAVHFF---CNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYS 80
Query: 114 HPDVLNAIFEQSKLLQHATTIYL-----HHAIADFAEALASKMPGNLKVVYFVNSGTEAN 168
           HP ++  + +   +        L      + +    E+L S  P  +  +  +  G+ +N
Sbjct: 81  HPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSN 140
Query: 169 E------------------------LAMLMARLSTG--NLGMIALRNAYHGGSSGTIGLT 202
           E                        L   M   + G  +  +++   A+HG + G +  T
Sbjct: 141 ENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATT 200
Query: 203 --------ALNTWKYPI-PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGK-- 251
                    + ++ +PI P   + + +  + +      + AR  ++++D I      K  
Sbjct: 201 HSKAIHKIDIPSFDWPIAPFPRLKYPL--EEFVKENQQEEARCLEEVEDLIVKYRKKKKT 258
Query: 252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQG 311
           VAG I E IQ  GG    +  + + + DI RK G   + DEVQTG G TG  +W  E  G
Sbjct: 259 VAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGK-FWAHEHWG 317
Query: 312 V--IPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID 369
           +    D++T +K +      G      E       +I FNT+ G+P  +     V+ +I 
Sbjct: 318 LDDPADVMTFSKKMMT----GGFFHKEEFRPNAPYRI-FNTWLGDPSKNLLLAEVINIIK 372
Query: 370 KERRQAHCADVGSHLLGRLRTLQERH-DIIGDVRGRGLMVGME 411
           +E   ++ A  G  LL  L  LQ R+   I  VRGRG     +
Sbjct: 373 REDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFD 415

>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M. Tuberculosis Length = 449

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 111/377 (29%), Positives = 165/377 (43%), Gaps = 50/377 (13%)
Query: 80  LNIVEGKMQYLFDE-NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA------T 132
           L++      YL D   GRRYLD F  + + + G   P +++     ++L+Q A      +
Sbjct: 37  LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 133 TIYLHHAIADFAEALASKMPGN--LKVVYFVNSGTEANELAMLMA-----RLSTGN---- 181
            +Y   A+A F E  A ++ G+  L  ++FV  G  A E A+  A     R +  +    
Sbjct: 97  DVY-SVAMARFVETFA-RVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDP 154
Query: 182 -LG--MIALRNAYHGGSSGTIGLTALN-TWKYPIPQGEIHHVVNPDPYHG---------- 227
            LG  ++ LR A+HG S  T+ LT    T     P+ +   +  P    G          
Sbjct: 155 ALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALE 214
Query: 228 SFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGV 287
           +     AR A + + H        +A F+AE IQG GG     P +   + ++  +   +
Sbjct: 215 AEALRQARAAFETRPH-------DIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDAL 267
Query: 288 CIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIG-NGLPLGAVVTTPEIA-NVMAQK 345
            I DEVQTG G TG+  W ++   V PDIV   K     G+  G  V   E+A NV A  
Sbjct: 268 LIFDEVQTGCGLTGTA-WAYQQLDVAPDIVAFGKKTQVCGVMAGRRVD--EVADNVFAVP 324
Query: 346 IQFN-TFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTL-QERHDIIGDVRG 403
            + N ++GGN         +L VI+ E         G +L  RL  L  +   ++ D RG
Sbjct: 325 SRLNSSWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRG 384
Query: 404 RGLMVGMELVT--DRKE 418
           RGLM    L T  DR E
Sbjct: 385 RGLMCAFSLPTTADRDE 401

>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c Length = 449

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 111/377 (29%), Positives = 164/377 (43%), Gaps = 50/377 (13%)
Query: 80  LNIVEGKMQYLFDE-NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA------T 132
           L++      YL D   GRRYLD F  + + + G   P +++     ++L+Q A      +
Sbjct: 37  LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 133 TIYLHHAIADFAEALASKMPGN--LKVVYFVNSGTEANELAMLMA-----RLSTGN---- 181
            +Y   A+A F E  A ++ G+  L  ++FV  G  A E A+  A     R +  +    
Sbjct: 97  DVY-SVAMARFVETFA-RVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDP 154
Query: 182 -LG--MIALRNAYHGGSSGTIGLTALN-TWKYPIPQGEIHHVVNPDPYHG---------- 227
            LG  ++ LR A+HG S  T+ LT    T     P+ +   +  P    G          
Sbjct: 155 ALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALE 214
Query: 228 SFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGV 287
           +     AR A + + H        +A F+AE IQG GG     P +   + ++  +   +
Sbjct: 215 AEALRQARAAFETRPH-------DIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDAL 267
Query: 288 CIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIG-NGLPLGAVVTTPEIA-NVMAQK 345
            I DEVQTG G TG+  W ++   V PDIV   K     G+  G  V   E+A NV A  
Sbjct: 268 LIFDEVQTGCGLTGTA-WAYQQLDVAPDIVAFGKKTQVCGVMAGRRVD--EVADNVFAVP 324
Query: 346 IQF-NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHD-IIGDVRG 403
            +  +T+GGN         +L VI+ E         G +L  RL  L      ++ D RG
Sbjct: 325 SRLASTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRG 384
Query: 404 RGLMVGMELVT--DRKE 418
           RGLM    L T  DR E
Sbjct: 385 RGLMCAFSLPTTADRDE 401

>pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel Beta-phenylalanine Aminotransferase From Variovorax Paradoxus Length = 454

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 147/368 (39%), Gaps = 35/368 (9%)
Query: 55  PSADQVFQKRKQFL----GPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSC 110
           P++ + F+ + +++      S+  Y   PL I  G+   L+D +G RY D  A       
Sbjct: 42  PASQRQFEAQARYMPGANSRSVLFYAPFPLTIARGEGAALWDADGHRYADFIAEYTAGVY 101
Query: 111 GHCHPDVLNAIFEQSKLLQHATTIYLHHAI-ADFAEALASKMPGNLKVVYFVNSGTEANE 169
           GH  P++ +A+ E    +Q    +  H+ +    A  +  + P  ++ + F NSGTEAN 
Sbjct: 102 GHSAPEIRDAVIEA---MQGGINLTGHNLLEGRLARLICERFP-QIEQLRFTNSGTEANL 157
Query: 170 LAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSF 229
           +A+  A   TG   ++     YHGG  G     +  T  +         +V P       
Sbjct: 158 MALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDF-------LVLPY------ 204
Query: 230 GSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI 289
            +DA      ++ H       ++A  + E +QG  G +   P +L+ + +   + G + +
Sbjct: 205 -NDAQTARAQIERH-----GPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLV 258
Query: 290 ADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKI--- 346
            DEV T   R   H       G+  D+ T+ K IG G+  GA     ++  +   +    
Sbjct: 259 FDEVMT--SRLAPHGLA-NKLGIRSDLTTLGKYIGGGMSFGAFGGRADVMALFDPRTGPL 315
Query: 347 -QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG 405
               TF  N +  A G A L  +         A+ G  L  RL  L     +     G G
Sbjct: 316 AHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNALCANEGVAMQFTGIG 375
Query: 406 LMVGMELV 413
            ++    V
Sbjct: 376 SLMNAHFV 383

>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis Co92 Length = 429

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 120/303 (39%), Gaps = 29/303 (9%)
Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH 138
           PL I      YLFD +G+ Y+D          GH HP +  A+ E    ++   +     
Sbjct: 36  PLFIERADGAYLFDVDGKAYIDYVGSWGPXILGHNHPAIRQAVIEA---VERGLSFGAPT 92
Query: 139 AIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGS--- 195
                   L + +      V  VNSGTEA   A+ +AR  TG   +I     YHG +   
Sbjct: 93  EXEVKXAQLVTDLVPTXDXVRXVNSGTEATXSAIRLARGYTGRDKIIKFEGCYHGHADCL 152
Query: 196 ---SGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKV 252
              +G+  LT        +P     H +          +D A   Q  + +       +V
Sbjct: 153 LVKAGSGALTLGQPNSPGVPTDFAKHTLT------CTYNDLASVRQAFEQYPQ-----EV 201
Query: 253 AGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGF--GRTGSHYWGFETQ 310
           A  I E + G    +   P +L  +  +  + G + I DEV TGF     G+  +     
Sbjct: 202 ACIIVEPVAGNXNCIPPLPEFLPGLRALCDEFGALLIIDEVXTGFRVALAGAQDY----Y 257
Query: 311 GVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGLAVLRV 367
            VIPD+  + K IG G P+GA     E+ N +A      Q  T  GNP+  A G A L  
Sbjct: 258 HVIPDLTCLGKIIGGGXPVGAFGGRREVXNALAPTGPVYQAGTLSGNPIAXAAGFACLTE 317
Query: 368 IDK 370
           I +
Sbjct: 318 ISQ 320

>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A Bacterial Aminotransferase Length = 465

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 108/263 (41%), Gaps = 29/263 (11%)
Query: 71  SIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH 130
           SI  +   PL I +G      D +G  Y++          GH HP +  A+     +  +
Sbjct: 75  SILFHRPFPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLN 134
Query: 131 ATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNA 190
            +T   + A+  FAEA+  + P ++ +V F NSGTEAN +A+  A   TG   ++A    
Sbjct: 135 LSTQTENEAL--FAEAVCDRFP-SIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGG 191
Query: 191 YHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFG--SDAARYAQDLQDHIDFGT 248
           YHGG         LN            H     PYH   G  +D    A  L+ H     
Sbjct: 192 YHGG--------LLNFAS--------GHAPTNAPYHVVLGVYNDVEGTADLLKRH----- 230
Query: 249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE 308
               A  + E + G GG V     +L L+     + G + I DEV T     G      E
Sbjct: 231 GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTSRLSGGGAQ---E 287
Query: 309 TQGVIPDIVTMAKGIGNGLPLGA 331
             G+  D+ T+ K IG G+  GA
Sbjct: 288 MLGISADLTTLGKYIGGGMSFGA 310

>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase (D-Phgat) From Pseudomonas Strutzeri St-201 Length = 453

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 117/277 (42%), Gaps = 34/277 (12%)
Query: 92  DENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAI-ADFAEALASK 150
           D +G  YLD F G   +  GH HP V  AI E    L H       H +   +AE + + 
Sbjct: 53  DVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEA---LSHGVQYAASHPLEVRWAERIVAA 109
Query: 151 MPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYP 210
            P +++ + F  SGTE   LA+ +AR  TG   ++     YHG             W   
Sbjct: 110 FP-SIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHG-------------WHDF 155
Query: 211 IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHID-----FGTSGK-VAGFIAETIQGVG 264
              G   H  +  P  G      A       D I+     F   G  +A FIAE +    
Sbjct: 156 SASGYNSH-FDGQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHF 214
Query: 265 GAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET-QGVIPDIVTMAKGI 323
           G   ++  +L+   ++ R+ G + I DEV +GF R G+H  G +    V PD+  +AK  
Sbjct: 215 GVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNH--GMQALLDVQPDLTCLAKAS 271
Query: 324 GNGLPLGAVVTTPEIANVMAQK-----IQFNTFGGNP 355
             GLP G +    ++  V+++      +   TF GNP
Sbjct: 272 AGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNP 308

>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 97/259 (37%), Gaps = 76/259 (29%)
Query: 158 VYFVNSGTEANELAMLMA--RLSTGN-------------LGMIALRNAYHGGSSGTIGLT 202
           VYF ++G+ A E+A+ MA  +    +             + +IALR +YHG + G +   
Sbjct: 445 VYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQ 504
Query: 203 ALN----------------------------TWKYPIPQGEIHHVVNPDPYHGSFGS--- 231
           A +                            +W   +P+          P +G+F S   
Sbjct: 505 APSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPES----FSEIAPEYGTFTSRDE 560
Query: 232 ------DAARYA--------QDLQDHIDFGTSGKVAGFIAE-TIQGVGGAVELAPGYLKL 276
                 DA+  A        + LQ+H     S  V   I E  I G GG   + P + ++
Sbjct: 561 IFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRV 620
Query: 277 VYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGL-PLGAVVTT 335
           + +  R      I DEV TGF R G      E  G  PDI   AK +  G+ PL   + T
Sbjct: 621 LVNECRNRKIPVIFDEVFTGFWRLGVET-TTELLGCKPDIACFAKLLTGGMVPLAVTLAT 679
Query: 336 PEIANVMAQKIQFNTFGGN 354
             +         F++F G+
Sbjct: 680 DAV---------FDSFSGD 689

>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional Dapa Aminotransferase-Dethiobiotin Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 233 AARYAQDLQDHIDFGTSGKVAGFIAE-TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD 291
           +A  ++ LQ+H     S  V   I E  I G GG   + P + +++ +  R      I D
Sbjct: 576 SAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGXHXVDPLFQRVLVNECRNRKIPVIFD 635
Query: 292 EVQTGFGRTGSHYWGFETQGVIPDIVTMAKGI-GNGLPLGAVVTTPEIANVMAQKIQFNT 350
           EV TGF R G      E  G  PDI   AK + G  +PL   + T  +         F++
Sbjct: 636 EVFTGFWRLGVET-TTELLGCKPDIACFAKLLTGGXVPLAVTLATDAV---------FDS 685
Query: 351 FGGN 354
           F G+
Sbjct: 686 FSGD 689

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	477
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	0.0
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	0.0
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	1e-143
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	1e-140
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	1e-136
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	1e-122
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	1e-113
3nui_A	478	Pyruvate transaminase; amino transferase, transfer	1e-110
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	1e-108
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	1e-107
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	1e-106
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	1e-105
3hmu_A	472	Aminotransferase, class III; structural genomics,	1e-105
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	1e-104
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	1e-104
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	1e-104
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	1e-103
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	1e-100
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	9e-98
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	3e-97
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	1e-94
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	2e-93
1z7d_A	433	Ornithine aminotransferase; structural genomics co	3e-92
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	1e-90
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	6e-85
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	1e-68
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	5e-67
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	2e-57
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	2e-34
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	9e-34
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	2e-29
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	4e-29
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	1e-28
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	7e-28
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	2e-27
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	2e-25

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433

 Score =  547 bits (1411), Expect = 0.0
 Identities = 135/427 (31%), Positives = 209/427 (48%), Gaps = 12/427 (2%)

Query: 59  QVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVL 118
             ++  +  L      +   P+ I   K  +++D +GR  LD  +G ++   GHCHP+++
Sbjct: 8   TFWRNARHHLVRYGGTFE--PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIV 65

Query: 119 NAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS 178
           + I E +  L H  +  L   + D A  LA+  P  L     +++G E+NE A+ MA+L 
Sbjct: 66  SVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLV 125

Query: 179 TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ-GEIHHVVNPDPYHGSFGS----DA 233
           TG   ++    ++HG +      T     K   P       +  P  Y   F      D 
Sbjct: 126 TGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDY 185

Query: 234 ARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEV 293
                   D ID  +SG +A FIAE I   GG +EL  GY+  +       G + I DE 
Sbjct: 186 LAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEA 245

Query: 294 QTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK--IQFNTF 351
           QTG GRTG   +  +  GV PDI+T++K +G GLPL A+VT+  I     +   + + T 
Sbjct: 246 QTGVGRTG-TMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTH 304

Query: 352 GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGME 411
             +P+ +A GL VL V+ ++   A    +G  L   L  L ER D IGDVRGRGL++G+E
Sbjct: 305 VSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVE 364

Query: 412 LVTDRKEKTPAKAETAVLFEKLRELGVLVG--KGGLHGNVFRIKPPMCFTKDDADFLVDA 469
           +V DR+ K PA    A +  +   LG+ +   +    G VFRI PP+  ++D+ D  +  
Sbjct: 365 IVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSL 424

Query: 470 LDYSMSK 476
           L  ++ +
Sbjct: 425 LGQAIER 431

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439

 Score =  534 bits (1378), Expect = 0.0
 Identities = 140/427 (32%), Positives = 207/427 (48%), Gaps = 5/427 (1%)

Query: 54  GPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHC 113
           G    +    R      ++      PL I  G+   L +ENGR  +D        S G+ 
Sbjct: 1   GSHMTKALYDRDGAAIGNLQKLRFFPLAISGGRGARLIEENGRELIDLSGAWGAASLGYG 60

Query: 114 HPDVLNAIFEQSKLLQHATTIYLHHA-IADFAEALASKMPGN-LKVVYFVNSGTEANELA 171
           HP ++ A+   +     AT +   +A     AE L +  PG     ++F +SG++ANE A
Sbjct: 61  HPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAA 120

Query: 172 MLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFG- 230
                 +TG  G+IA   AYHG + G++  +  +          +  +  PDPY      
Sbjct: 121 YRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRND 180

Query: 231 SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA 290
                    L + +    +G +     E IQ  GG +    G+L+   DI R  G + + 
Sbjct: 181 PTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVC 240

Query: 291 DEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNT 350
           DEV+ G  R+G     FE +G +PDI+ + KG+G GLPL AV+   EI +  A      T
Sbjct: 241 DEVKVGLARSG-RLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDC-ASAFAMQT 298

Query: 351 FGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM 410
             GNP+ +A GLAVL  ID++   A     G  L   L  L +RH +IGD+RGRGL  GM
Sbjct: 299 LHGNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGM 358

Query: 411 ELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDAL 470
           ELV DR+ + PA+AETA L  +  +LG++V   G++GNV    PP+  T+ D    +D L
Sbjct: 359 ELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLL 418

Query: 471 DYSMSKL 477
           D + S+L
Sbjct: 419 DRAFSEL 425

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453

 Score =  416 bits (1071), Expect = e-143
 Identities = 144/447 (32%), Positives = 213/447 (47%), Gaps = 14/447 (3%)

Query: 33  SAVATTPPQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFD 92
            ++     +L        P  GP +  + ++R+  +   +      P+  V+     + D
Sbjct: 3   GSMTDITYRLAQKRTIVTPLPGPRSGALAERRRAAVSAGVGSTA--PVYAVDADGGVIVD 60

Query: 93  ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH-AIADFAEALASKM 151
            +G  ++D  AGI   + G  HP V  AI +Q+    H   +   +      AE L +  
Sbjct: 61  ADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALT 120

Query: 152 PGNL-KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY- 209
           PG+  K     NSG EA E A+ +ARL+TG   ++A  NAYHG ++ T+ LTA +   Y 
Sbjct: 121 PGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSM-PYK 179

Query: 210 ----PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHID-FGTSGKVAGFIAETIQGVG 264
               P    E++ +    P     G      A+     I+    +  +A  I E IQG G
Sbjct: 180 SQFGPFA-PEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEG 238

Query: 265 GAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIG 324
           G +  APG+L  +     + G V IADEVQTGF RTG  ++  E +G++PDIVTMAKGI 
Sbjct: 239 GFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTG-AWFASEHEGIVPDIVTMAKGIA 297

Query: 325 NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHL 384
            G+PL AV    E+ + +       T+GGNPV  A  +A L V+ +    A    + + +
Sbjct: 298 GGMPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASV 357

Query: 385 LGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG 444
             RL  L E  DIIG+VRGRG M+ +E+V       P  A T  +  +    GVL+   G
Sbjct: 358 TSRLSALAEEVDIIGEVRGRGAMLAIEIVKP-GTLEPDAALTKSIAAEALSQGVLILTCG 416

Query: 445 LHGNVFRIKPPMCFTKDDADFLVDALD 471
             GNV R+ PP+    D  D  + AL 
Sbjct: 417 TFGNVIRLLPPLVIGDDLLDEGITALS 443

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451

 Score =  410 bits (1056), Expect = e-140
 Identities = 135/450 (30%), Positives = 194/450 (43%), Gaps = 18/450 (4%)

Query: 33  SAVATTPPQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFD 92
            ++ + P Q         P  GP +  +  ++   +   +      P+  V      + D
Sbjct: 3   GSMVSHPEQSRHLATAI-P--GPRSQALIDRKGTAVARGVGTTM--PVYAVRAGGGIVED 57

Query: 93  ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH-AIADFAEALASKM 151
            +G R +D  +GI   + G+  P V+ A+  Q     H   +   +       E L    
Sbjct: 58  VDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLT 117

Query: 152 PGN-LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTW--- 207
           P    K     NSG+EA E A+ +AR  T    ++A  +AYHG ++ T+ LTA       
Sbjct: 118 PVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKD 177

Query: 208 KYPIPQGEIHHVVNPDPYHG-SFGSDAARYAQDLQDHIDF-----GTSGKVAGFIAETIQ 261
            +     EI+      P+    FG + A   +               +  +A  + E IQ
Sbjct: 178 GFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQ 237

Query: 262 GVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAK 321
           G GG +  A G+L  + D  RK   V IADEVQTGF RTG   +  E +G+ PD++  AK
Sbjct: 238 GEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTG-AMFACEHEGIDPDLIVTAK 296

Query: 322 GIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVG 381
           GI  GLPL AV    EI +         T+GGNP+  A  LA +  I+ E   A    + 
Sbjct: 297 GIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIE 356

Query: 382 SHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVG 441
             +  RL  LQ   D IGDVRGRG M+ MELV       P    T  L       GV+V 
Sbjct: 357 KIMKDRLGRLQAEDDRIGDVRGRGAMIAMELV-KAGTTEPDADLTKALCAGAHAAGVIVL 415

Query: 442 KGGLHGNVFRIKPPMCFTKDDADFLVDALD 471
             G +GNV R  PP+    D  +  +D L+
Sbjct: 416 SCGTYGNVVRFLPPLSIGDDLLNEGLDVLE 445

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426

 Score =  399 bits (1028), Expect = e-136
 Identities = 127/429 (29%), Positives = 199/429 (46%), Gaps = 14/429 (3%)

Query: 56  SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHP 115
           S  ++ Q+R Q +   +   +  P+     +   ++D  GR YLD   GI  ++ GH HP
Sbjct: 3   SNKELMQRRSQAIPRGVGQIH--PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHP 60

Query: 116 DVLNAIFEQSKLLQHAT-TIYLHHAIADFAEALASKMPGNL-KVVYFVNSGTEANELAML 173
            V+ A+  Q K L H    +  +    +  E +  K+PG+  K    V +G+EA E A+ 
Sbjct: 61  KVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVK 120

Query: 174 MARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY-----PIPQGEIHHVVNPDPYHGS 228
           +AR +T   G IA   AYHG +  T+ LT      Y      +P G ++  + P P HG 
Sbjct: 121 IARAATKRSGTIAFSGAYHGRTHYTLALTGKVN-PYSAGMGLMP-GHVYRALYPCPLHGI 178

Query: 229 FGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVC 288
              DA      +  +        +A  + E +QG GG    +P +++ +  +  + G + 
Sbjct: 179 SEDDAIASIHRIFKND--AAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIML 236

Query: 289 IADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQF 348
           IADEVQ+G GRTG   +  E  GV PD+ T AK I  G PL  V    E+ + +A     
Sbjct: 237 IADEVQSGAGRTG-TLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLG 295

Query: 349 NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMV 408
            T+ GNP+     L VL+V ++E       D+G  L   L  + E+H  IGDVRG G M+
Sbjct: 296 GTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMI 355

Query: 409 GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVD 468
            +EL  D     P    TA +  + R+ G+++   G + NV RI  P+          ++
Sbjct: 356 AIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLE 415

Query: 469 ALDYSMSKL 477
            +     + 
Sbjct: 416 IISQCFDEA 424

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452

 Score =  364 bits (936), Expect = e-122
 Identities = 125/425 (29%), Positives = 202/425 (47%), Gaps = 26/425 (6%)

Query: 77  QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL 136
                  + +  ++ D  G+RYLD  +G+  V+ G+   ++  A ++Q + L +      
Sbjct: 30  NSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMSQS 89

Query: 137 HHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRNA 190
           H      AE L   + G   + +F NSG+EANE A  +AR      G       ++    
Sbjct: 90  HEPAIKLAEKLNEWLGGEYVI-FFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRG 148

Query: 191 YHGGSSGTIGLTAL--NTWKYPIPQGEIHHVVNPDPYHGSFGSD----AARYAQDLQDHI 244
           YHG +  T+  T      ++Y        HV  PD Y                +++   +
Sbjct: 149 YHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVM 208

Query: 245 DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHY 304
            +  S  +A FI E I   GG +     Y+K V++  +K G + I+DEV  GFGRTG   
Sbjct: 209 TWELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTG-KA 267

Query: 305 WGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFN------TFGGNPVC 357
           +GF    V PDI+TMAKGI +  LPL A     EI      K ++       TFGGNP  
Sbjct: 268 FGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAA 327

Query: 358 SAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRK 417
            A  L  L +I+ E      A +GS LL +L+     H ++GD+RG+GL+VG+ELV D++
Sbjct: 328 CALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKE 387

Query: 418 EKTP-AKAETAVLFEKLRELGVLVGKGGL----HGNVFRIKPPMCFTKDDADFLVDALDY 472
            K P    + A +    +E G+++G+ G+    + N+  + PP+  + ++  F++  L  
Sbjct: 388 TKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKT 447

Query: 473 SMSKL 477
           +M ++
Sbjct: 448 AMERI 452

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460

 Score =  341 bits (877), Expect = e-113
 Identities = 111/425 (26%), Positives = 193/425 (45%), Gaps = 28/425 (6%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI--YL 136
              +  G+   ++D NGR+ +DAFAG+  V+ G+    + +AI  Q+K L +      + 
Sbjct: 34  TRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHG 93

Query: 137 HHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRNA 190
             A    A+ +  + P  +  VYF  SG++ANE  + +       LG      +I+    
Sbjct: 94  TEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRG 153

Query: 191 YHGGSSGTIGLTAL--NTWKYPIPQGEIHHVVNPDPY-HGSFGSD----AARYAQDLQDH 243
           YHG    T  LT L      + +P+  + H   P  +            +   A  L++ 
Sbjct: 154 YHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEM 213

Query: 244 IDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH 303
           I       +A FI E I G GG V    GY + +  +++K   + +ADEV TGFGR G  
Sbjct: 214 ILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLG-T 272

Query: 304 YWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQ----KIQFN---TFGGNP 355
            +G +  G+ PD++T+AKG+ +   PL  V+    +  V+ Q            T+  +P
Sbjct: 273 MFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHP 332

Query: 356 VCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTD 415
           +C A G+A L +ID+     +  + G++    L      H  +G+VRG G++  +E V D
Sbjct: 333 ICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVAD 392

Query: 416 RKEKTPAKAETAV---LFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDY 472
           + ++    A   +   +   L   GV+  +    G++    PP+C T++ AD +V     
Sbjct: 393 KDDRVFFDASQKIGPQVATALAASGVIG-RAMPQGDILGFAPPLCLTREQADIVVSKTAD 451

Query: 473 SMSKL 477
           ++  +
Sbjct: 452 AVKSV 456

>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478

 Score =  334 bits (860), Expect = e-110
 Identities = 115/423 (27%), Positives = 188/423 (44%), Gaps = 30/423 (7%)

Query: 74  HYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT 133
            + +  + +  G+  Y+ D NGRRYLDA +G+  +  G  H  +++A   Q +       
Sbjct: 39  LHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHA 98

Query: 134 I--YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MI 185
               +       +E L    P +   V++ NSG+EAN+  + M        G      ++
Sbjct: 99  FFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKIL 158

Query: 186 ALRNAYHGGSSGTIGLTALNTWK-YPIPQGEIHHVVNPDPY-HGSFGSD----AARYAQD 239
              NAYHG ++ +  +T       + +P     H+  P  + +G  G       AR A++
Sbjct: 159 TRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARE 218

Query: 240 LQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGR 299
           L++ I    +  +AGF AE + G GG +  A GY + +  I+RK     I+DEV  GFGR
Sbjct: 219 LEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGR 278

Query: 300 TGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQ----KIQFN---TF 351
           TG + WG  T    PD +  +K +  G  P+GAV+  PE++  +        +F    T 
Sbjct: 279 TG-NTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTA 337

Query: 352 GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGME 411
            G+PV  A  L  + V+  E    +   +      RL+ + E    IG+ RG G M  +E
Sbjct: 338 SGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAE-RPNIGEYRGIGFMWALE 396

Query: 412 LVTDRKEKTPAKAETAV---LFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVD 468
            V D+  KTP     +V   +     +LG++       G    + PP   T+   D + D
Sbjct: 397 AVKDKASKTPFDGNLSVSERIANTCTDLGLICRP---LGQSVVLCPPFILTEAQMDEMFD 453

Query: 469 ALD 471
            L+
Sbjct: 454 KLE 456

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459

 Score =  328 bits (842), Expect = e-108
 Identities = 108/421 (25%), Positives = 180/421 (42%), Gaps = 26/421 (6%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI--YL 136
              +  G+  YL+D  G + +D  AG+  V+ G+   D   A   Q + L    T     
Sbjct: 33  ARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTT 92

Query: 137 HHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRNA 190
           H A+ + +  LA   P     V++ NSG+E+ +  + M R      G      +I   N 
Sbjct: 93  HPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNG 152

Query: 191 YHGGSSGTIGLTALNTWK--YPIPQGEIHHVVNPDPYHGSFGSD----AARYAQDLQDHI 244
           YHG + G   L  +        +P   + H+  P  Y               A+ L++ I
Sbjct: 153 YHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKI 212

Query: 245 DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHY 304
               + KVA F+ E IQG GG +     Y   +  I RK   + +ADEV  GFGRTG  +
Sbjct: 213 LEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTG-EW 271

Query: 305 WGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFN---TFGGNPVCSAG 360
           +G +  G  PD+ T AKG+ +G LP+GAV     +A  +     FN   T+ G+PVC+A 
Sbjct: 272 FGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAV 331

Query: 361 GLAVLRVIDKERRQAHCA-DVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEK 419
             A +  +  E        D+G ++  R R    R + + DVRG G++    LV ++ ++
Sbjct: 332 AHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKR 391

Query: 420 TPAKAETAV---LFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476
                   +     +      +++      G+     PP+  T+ + D ++   +  + +
Sbjct: 392 ELFPDFGEIGTLCRDIFFRNNLIMRAC---GDHIVSAPPLVMTRAEVDEMLAVAERCLEE 448

Query: 477 L 477
            
Sbjct: 449 F 449

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430

 Score =  324 bits (834), Expect = e-107
 Identities = 111/427 (25%), Positives = 188/427 (44%), Gaps = 33/427 (7%)

Query: 71  SIFHYYQKPLN-IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ 129
           ++F+   KP    V G+  +L+D+ GRRYLD  +G +  + GH   +V   +  Q+  L 
Sbjct: 3   NVFYRSSKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLP 62

Query: 130 HATTI-YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR---LSTGNLG-- 183
                 +    + ++A  LA  +       + V+ G+EA E A+ +AR   +  G  G  
Sbjct: 63  FVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRF 122

Query: 184 -MIALRNAYHGGSSGTIGLTALNTWKYP----IPQGEIHHVVNPDPYHGSFGSDAARYAQ 238
            +I    +YHG S G++  + +   +      +       +  PDP     G   A  A+
Sbjct: 123 KVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPAR--NG---AEDAE 177

Query: 239 DLQDHIDFGTSGKVAGFIAETIQGVGGAVELAP-GYLKLVYDIVRKAGGVCIADEVQTGF 297
            L+  ++      VA F+AE + G   A      GY + V DI  +AG + IADEV +G 
Sbjct: 178 GLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGM 237

Query: 298 GRTGSHYWGFET-QGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQF----NTF 351
           GR G          GV PDI  + KG+  G  PL  ++  P++   +           T+
Sbjct: 238 GRCG-SPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTY 296

Query: 352 GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGME 411
            G+PV  A GL+VL ++++E       + G+ LL  L+ LQ R   +  VRG GL++G+ 
Sbjct: 297 AGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVV 356

Query: 412 LVTDRKEKTPAKAE--TAVLFEKLRELGVLV-----GKGGLHGNVFRIKPPMCFTKDDAD 464
            + D       +     + +     + G++       +    G+   + PP+  T  + D
Sbjct: 357 -LGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVD 415

Query: 465 FLVDALD 471
            L+  L 
Sbjct: 416 GLLALLA 422

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449

 Score =  322 bits (827), Expect = e-106
 Identities = 110/428 (25%), Positives = 185/428 (43%), Gaps = 32/428 (7%)

Query: 74  HYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT 133
           ++ + P  IV  +  +L D+ GR+  D+ +G+ T   GH   ++  A+ +Q   L ++  
Sbjct: 28  NFLRDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPG 87

Query: 134 IYLHHAIA-DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIA 186
               H ++   AE +    PGNL  V+F +SG+E    A+ M R      G      MI 
Sbjct: 88  FQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIG 147

Query: 187 LRNAYHGGSSGTIGLTAL--NTWKYPIPQGEIHHVVNPDPYHGSFGSD-----AARYAQD 239
               YHG +     L  +  N   +  P  ++ H+ +      ++            A +
Sbjct: 148 RARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADE 207

Query: 240 LQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGR 299
           L   I+   +  +A    E + G  G +    GYLK   +I  +   + + DEV TGFGR
Sbjct: 208 LLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGR 267

Query: 300 TGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK------IQFN--- 349
           TG   +G ++ GV PD++ +AK + NG +P+GAV+ + EI      +      ++F    
Sbjct: 268 TG-SMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGY 326

Query: 350 TFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVG 409
           T+  +PV  A GLA L ++ KE      A+V  H    L  ++     + D+R  GL   
Sbjct: 327 TYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKG-AKNVIDIRNFGLAGA 385

Query: 410 MELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDA 469
           +++     +      E       L + G  V  G   G+  +  P       D D L DA
Sbjct: 386 IQIAPRDGDAIVRPFE---AGMALWKAGFYVRFG---GDTLQFGPTFNSKPQDLDRLFDA 439

Query: 470 LDYSMSKL 477
           +   ++KL
Sbjct: 440 VGEVLNKL 447

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419

 Score =  319 bits (820), Expect = e-105
 Identities = 118/441 (26%), Positives = 203/441 (46%), Gaps = 43/441 (9%)

Query: 56  SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCG-HCH 114
            + ++ ++   +L  S       PL I  G+  +++D +G +YLD  +GI   + G   H
Sbjct: 2   LSRKIIEESDIYLATSTRDPELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSH 61

Query: 115 PDVLNAIFEQSKLLQHAT-TIYLHHAIADFAEALASKMPGNL-KVVYFVNSGTEANELAM 172
           P+V+    EQ + L HA    + +    + A+ L +  PGN  K V+F NSGTEA E ++
Sbjct: 62  PEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASI 121

Query: 173 LMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY-----PIPQGEIHHVVNPDPYHG 227
            + + +TG   +IA    +HG + G+I LTA           P     + HV  P+PY  
Sbjct: 122 KVVK-NTGRKYIIAFLGGFHGRTFGSISLTASKA-VQRSIVGPFM-PGVIHVPYPNPYRN 178

Query: 228 SFGSD--------AARYAQDLQDHIDFGTSG--KVAGFIAETIQGVGGAVELAPGYLKLV 277
            +  +          R  + ++D+I        +VAG   E IQG GG V     +   +
Sbjct: 179 PWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAEL 238

Query: 278 YDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTP 336
             + +K G + + DEVQ G GRTG   +  E    +PD++T+AK +G G +P+GA +   
Sbjct: 239 QKLAKKYGILLVDDEVQMGLGRTG-KLFAIENFNTVPDVITLAKALGGGIMPIGATIFRK 297

Query: 337 EIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHD 396
           ++       +  NTFGGN +  A G  V+ ++  +    H  ++G      L+       
Sbjct: 298 DLD--FKPGMHSNTFGGNALACAIGSKVIDIV--KDLLPHVNEIGKIFAEELQ------G 347

Query: 397 IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPM 456
           +  DVRG GL  G+E    +            +  +  + G+L+   G   +  R+ PP+
Sbjct: 348 LADDVRGIGLAWGLEYNEKKV--------RDRIIGESFKRGLLLLPAG--RSAIRVIPPL 397

Query: 457 CFTKDDADFLVDALDYSMSKL 477
             ++++A   +D L   +  +
Sbjct: 398 VISEEEAKQGLDILKKVIKVV 418

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472

 Score =  319 bits (820), Expect = e-105
 Identities = 111/415 (26%), Positives = 191/415 (46%), Gaps = 28/415 (6%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI--YL 136
              I   +  +L D  G   LDA AG+  V+ G+   ++      Q + L +  T     
Sbjct: 38  TRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTT 97

Query: 137 HHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRNA 190
           H      A+ LA   PG+L  V+F   G+EAN+  + M R    N G      +I+ +NA
Sbjct: 98  HVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNA 157

Query: 191 YHGGSSGTIGLTALNTWK--YPIPQGEIHHVVNPDPYHGSFGSD----AARYAQDLQDHI 244
           YHG +  +  L  +        +    +HH+  P+ +      D        A++L++ I
Sbjct: 158 YHGSTVASSALGGMAGMHAQSGLIPD-VHHINQPNWWAEGGDMDPEEFGLARARELEEAI 216

Query: 245 DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHY 304
                 +VA FIAE +QG GG +     Y   +  I  K   + IADEV  GFGRTG ++
Sbjct: 217 LELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTG-NW 275

Query: 305 WGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFN---TFGGNPVCSAG 360
           +G +T G+ P I+T+AKG+ +G  P+G  +   E+A+V+ +  +FN   T+ G+PV +A 
Sbjct: 276 FGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKD-EFNHGYTYSGHPVAAAV 334

Query: 361 GLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKT 420
            L  LR++++E    H  +V +  L         H ++G+ +  G+M  + L  ++  + 
Sbjct: 335 ALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKASRA 394

Query: 421 PAKAET----AVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALD 471
              +E      +  E+     +++      G+   I PP+  T  + D +   + 
Sbjct: 395 KFASEPGTIGYICRERCFANNLIMRHV---GDRMIISPPLVITPAEIDEMFVRIR 446

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476

 Score =  319 bits (820), Expect = e-104
 Identities = 106/423 (25%), Positives = 196/423 (46%), Gaps = 29/423 (6%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL-H 137
              +   +  Y+  E+GRR +D  AG+     G+   ++++A+  Q+ +L +A+  Y+  
Sbjct: 37  QPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPWYMAT 96

Query: 138 HAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG------MIALRNAY 191
              A  AE +A+  PG+L  ++F   G+ A + A+  +      LG      +I   + Y
Sbjct: 97  SPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGY 156

Query: 192 HGGSSGTIGLTAL--NTWKYPIPQGEIHHVVNPDPYHGSFGSDAA---RYAQDLQDHIDF 246
           HG ++ T   T    N   + I Q  I  + +P+P H    S  A      Q+ +D I+ 
Sbjct: 157 HGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIES 216

Query: 247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG 306
                +A F+AE I   GG +    GY      I  K   + I+DEV TGFGR G  ++ 
Sbjct: 217 LGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCG-EWFA 275

Query: 307 FETQ-GVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK----IQFN---TFGGNPVC 357
            E   GV+PDI+T AKG+ +G +PLG +  +  +   ++ +      F    T+   PV 
Sbjct: 276 SEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVA 335

Query: 358 SAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRK 417
            A  LA + ++++E       ++  +    L +L++    + + R  GL+  ++ + D  
Sbjct: 336 CAAALANIELMEREGIVDQAREMADYFAAALASLRD-LPGVAETRSVGLVGCVQCLLDPT 394

Query: 418 EKTPAKAETAV---LFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSM 474
                  + A    + E+  ELG++V      G++  I PP+  ++   D +V  +  ++
Sbjct: 395 RADGTAEDKAFTLKIDERCFELGLIVRPL---GDLCVISPPLIISRAQIDEMVAIMRQAI 451

Query: 475 SKL 477
           +++
Sbjct: 452 TEV 454

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449

 Score =  317 bits (814), Expect = e-104
 Identities = 108/458 (23%), Positives = 166/458 (36%), Gaps = 45/458 (9%)

Query: 50  KPYTGPSADQVFQKRKQFLGPSIFH-YYQKPLNIVEGKMQYLFDE-NGRRYLDAFAGIVT 107
           K            +  + LG S+        L++      YL D   GRRYLD F  + +
Sbjct: 6   KSVALAGRPTTPDRVHEVLGRSMLVDGLDIVLDLTRSGGSYLVDAITGRRYLDMFTFVAS 65

Query: 108 VSCGHCHPDVLNAIFEQSKLLQH-----ATTIYLHHAIADFAEALASKMPGN-LKVVYFV 161
            + G   P +++     ++L+Q      + +     A+A F E  A  +    L  ++FV
Sbjct: 66  SALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFFV 125

Query: 162 NSGTEANELAMLMARLSTGNLG------------MIALRNAYHGGSSGTIGLTALNTWKY 209
             G  A E A+  A                    ++ LR A+HG S  T+ LT       
Sbjct: 126 EGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTN-TKPTI 184

Query: 210 -----PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF---GTSGKVAGFIAETIQ 261
                      I     P    G      A    +               +A F+AE IQ
Sbjct: 185 TARFPKFDWPRID---APYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQ 241

Query: 262 GVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAK 321
           G GG     P +   + ++  +   + I DEVQTG G TG   W ++   V PDIV   K
Sbjct: 242 GEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTG-TAWAYQQLDVAPDIVAFGK 300

Query: 322 GIGNGLPLGAVVTTPEIANVMAQK-IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADV 380
                  +          NV A      +T+GGN         +L VI+ E         
Sbjct: 301 KTQVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQH 360

Query: 381 GSHLLGRLRTLQERH-DIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVL 439
           G +L  RL  L      ++ D RGRGLM    L        P  A+   L  +L +  V+
Sbjct: 361 GKYLRARLDELAADFPAVVLDPRGRGLMCAFSL--------PTTADRDELIRQLWQRAVI 412

Query: 440 VGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477
           V   G   +  R +PP+  +  + D  + A+  ++  +
Sbjct: 413 VLPAG--ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395

 Score =  315 bits (809), Expect = e-104
 Identities = 127/424 (29%), Positives = 199/424 (46%), Gaps = 42/424 (9%)

Query: 53  TGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGH 112
           T      + +  K         Y +  L IV G+   ++D  G  Y+D   G    + GH
Sbjct: 5   TLEDWRALLEAEKTLDSGV---YNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGH 61

Query: 113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAM 172
            +P+V+ A+  Q++ L             +F   L + +P  L  V+ VNSGTEANE A+
Sbjct: 62  GNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAAL 121

Query: 173 LMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY-----PIPQGEIHHVVNPDPYHG 227
             AR  TG    +A    + G + G++ +T     KY     P+ +  +  +    PY+ 
Sbjct: 122 KFARAHTGRKKFVAAMRGFSGRTMGSLSVTW--EPKYREPFLPLVEP-VEFI----PYN- 173

Query: 228 SFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGV 287
               D       L+  +D     + A  I E +QG GG     P +L+   +I ++ G +
Sbjct: 174 ----DVE----ALKRAVD----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGAL 221

Query: 288 CIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQ 347
            I DE+QTG GRTG   + FE  G++PDI+T+AK +G G+PLG  V   E+A  M +   
Sbjct: 222 LILDEIQTGMGRTG-KRFAFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGH 280

Query: 348 FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLM 407
             TFGGNP+  A G+A +R +++ R     A++G   + +LR +      I +VRG GLM
Sbjct: 281 GTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPK--IREVRGMGLM 338

Query: 408 VGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLV 467
           VG+EL                +    +E  VL  + G    V R  PP+   K+D + +V
Sbjct: 339 VGLELKEKAAP---------YIARLEKEHRVLALQAG--PTVIRFLPPLVIEKEDLERVV 387

Query: 468 DALD 471
           +A+ 
Sbjct: 388 EAVR 391

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472

 Score =  314 bits (806), Expect = e-103
 Identities = 108/488 (22%), Positives = 182/488 (37%), Gaps = 66/488 (13%)

Query: 37  TTPPQLPPFDHD-PKPYT---GPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFD 92
                   FD+D P   T   GP + ++ ++          H+     N  E +  YL D
Sbjct: 3   AAAKVDVEFDYDGPLMKTEVPGPRSRELMKQLNIIQNAEAVHF---FCNYEESRGNYLVD 59

Query: 93  ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-----IYLHHAIADFAEAL 147
            +G R LD ++ I ++  G+ HP ++  + +   +           +   + +    E+L
Sbjct: 60  VDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESL 119

Query: 148 ASKMPGNLKVVYFVNSGTEANELAMLMARL--------------------------STGN 181
            S  P  +  +  +  G+ +NE A     +                             +
Sbjct: 120 LSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPD 179

Query: 182 LGMIALRNAYHGGSSGTIGLTALNT-WKYPIP--QGEIHHVVNP----DPYHGSFGSDAA 234
             +++   A+HG + G +  T      K  IP     I          + +      + A
Sbjct: 180 YSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEA 239

Query: 235 RYAQDLQDHIDFGTSGK--VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADE 292
           R  ++++D I      K  VAG I E IQ  GG    +  + + + DI RK G   + DE
Sbjct: 240 RCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDE 299

Query: 293 VQTGFGRTGSHYWGFETQGV--IPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNT 350
           VQTG G TG  +W  E  G+    D++T +K +  G          E     A    FNT
Sbjct: 300 VQTGGGSTG-KFWAHEHWGLDDPADVMTFSKKMMTGGFFHK-----EEFRPNAPYRIFNT 353

Query: 351 FGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERH-DIIGDVRGRGLMVG 409
           + G+P  +     V+ +I +E   ++ A  G  LL  L  LQ R+   I  VRGRG    
Sbjct: 354 WLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCS 413

Query: 410 MELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDA 469
            +         P ++    L    R  GV++G  G      R +P + F    A   ++ 
Sbjct: 414 FDT--------PDESIRNKLISIARNKGVMLGGCG--DKSIRFRPTLVFRDHHAHLFLNI 463

Query: 470 LDYSMSKL 477
               ++  
Sbjct: 464 FSDILADF 471

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420

 Score =  304 bits (782), Expect = e-100
 Identities = 120/414 (28%), Positives = 179/414 (43%), Gaps = 42/414 (10%)

Query: 75  YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI 134
           Y       V+GK   ++D+ G+ Y+D   GI   + GHCHP ++ A+  Q + L H + +
Sbjct: 36  YAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNV 95

Query: 135 YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARL------STGNLGMIALR 188
           + +         L          V F+NSGTEANE A  +AR       S     +IA  
Sbjct: 96  FTNEPALRLGRKLIDATFAE--RVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFH 153

Query: 189 NAYHGGSSGTIGLTALNTWKY-----PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDH 243
           NA+HG S  T  ++     KY     P P   I HV         F    A     ++  
Sbjct: 154 NAFHGRSLFT--VSVGGQPKYSDGFGPKPAD-IIHV--------PFNDLHA-----VKAV 197

Query: 244 IDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH 303
           +D          + E IQG GG     P +LK + D+  +   + + DEVQ G GRTG  
Sbjct: 198 MD----DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTG-D 252

Query: 304 YWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLA 363
            + +   GV PDI+T AK +G G P+ A++TT EIA+        +T+GGNP+  A   A
Sbjct: 253 LFAYMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGA 312

Query: 364 VLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAK 423
              +I+               +  L+ + E+ DI  D+RG GL++G EL      K   K
Sbjct: 313 AFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAEL------KPKYK 366

Query: 424 AETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477
                      E GV+V   G   +V R  P +   + D    +     ++ K+
Sbjct: 367 GRARDFLYAGAEAGVMVLNAG--ADVMRFAPSLVVEEADIHEGMQRFAQAVGKV 418

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397

 Score =  299 bits (767), Expect = 9e-98
 Identities = 121/413 (29%), Positives = 197/413 (47%), Gaps = 44/413 (10%)

Query: 75  YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI 134
           Y + P   V GK  +++DE G  YLD  +GI     GH HP ++ AI +Q++ L H + +
Sbjct: 19  YSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNL 78

Query: 135 YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARL-----STGNLGMIALRN 189
           + +    + AE L+         V+F N+GTEANE A+ +AR      S     +++  N
Sbjct: 79  FWNRPQMELAELLSKN--TFGGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHN 136

Query: 190 AYHGGSSGTIGLTALNTWKY-----PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHI 244
           ++HG + G+  LTA    KY     P+  G   +          F +        L+  +
Sbjct: 137 SFHGRTLGS--LTATGQPKYQKPFEPLVPG-FEYF--------EFNNVED-----LRRKM 180

Query: 245 DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHY 304
                  V     E IQG  G V     +L+    +  +   + + DEVQ G GRTG   
Sbjct: 181 S----EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTG-KL 235

Query: 305 WGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAV 364
           + ++  GV+PD++T AKG+G G+P+GAV+   E ANV+       TFGGNP+    G+ V
Sbjct: 236 FAYQKYGVVPDVLTTAKGLGGGVPIGAVIVN-ERANVLEPGDHGTTFGGNPLACRAGVTV 294

Query: 365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKA 424
           ++ + KE       + G++L+ +L+ ++E +D++ DVRG GLM+G++   +         
Sbjct: 295 IKELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREE--------V 346

Query: 425 ETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477
               +  K  E  +LV   G   N  R  PP+     + D  V+ L   +  +
Sbjct: 347 SNREVATKCFENKLLVVPAG--NNTIRFLPPLTVEYGEIDLAVETLKKVLQGI 397

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395

 Score =  297 bits (763), Expect = 3e-97
 Identities = 114/414 (27%), Positives = 188/414 (45%), Gaps = 44/414 (10%)

Query: 75  YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI 134
           Y +  + + +G+  YLFD+  ++YLD  +GI   + G+ H      I  Q   L H + +
Sbjct: 15  YKRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNL 74

Query: 135 YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG-----MIALRN 189
           Y +  IA  A+ LA      L+ V+F NSGTE+ E AM  AR    N G      IA ++
Sbjct: 75  YYNENIAAAAKNLAKA--SALERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKH 132

Query: 190 AYHGGSSGTIGLTALNTWKY-----PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHI 244
           ++HG + G   L+     KY     P+  G +        Y+     D +     ++  +
Sbjct: 133 SFHGRTLGA--LSLTANEKYQKPFKPLISG-VKFA----KYN-----DIS----SVEKLV 176

Query: 245 DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHY 304
           +     K    I E++QG GG       + K +  +  +   + IADE+Q G GR+G  +
Sbjct: 177 N----EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSG-KF 231

Query: 305 WGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIA-NVMAQKIQFNTFGGNPVCSAGGLA 363
           + +E   ++PDI+T AK +G GL +GA V   ++A N +      +T+GGNP+  AG  A
Sbjct: 232 FAYEHAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNA 291

Query: 364 VLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAK 423
           V  +  +E+   +   +  +L   L  L    D     +G G M G+ L          K
Sbjct: 292 VFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFMQGLSL------DKSVK 345

Query: 424 AETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477
              A + +K +E  +L+   G   N  R  PP+   K+  D + + L  ++   
Sbjct: 346 V--AKVIQKCQENALLLISCG--ENDLRFLPPLILQKEHIDEMSEKLRKALKSF 395

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375

 Score =  289 bits (743), Expect = 1e-94
 Identities = 122/407 (29%), Positives = 194/407 (47%), Gaps = 51/407 (12%)

Query: 75  YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI 134
           Y + P+  V GK  YL+DE G+ YLD  +GI   S GH +P +  A+ EQ + L H + +
Sbjct: 7   YARLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNL 66

Query: 135 YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARL-----STGNLGMIALRN 189
           Y +    + A  L        K V+F NSGTE+ E A+ +AR             I+  N
Sbjct: 67  YENPWQEELAHKLVKHFWTEGK-VFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFEN 125

Query: 190 AYHGGSSGTIGLTALNTWKY-----PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHI 244
           ++HG + G+  L+A    K+     P+  G   +       +     D       +   +
Sbjct: 126 SFHGRTYGS--LSATGQPKFHKGFEPLVPG-FSYA----KLN-----DID----SVYKLL 169

Query: 245 DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHY 304
           D     + AG I E IQG GG  E +  +L  + +I ++   + I DEVQTG GRTG  +
Sbjct: 170 D----EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE-F 224

Query: 305 WGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAV 364
           + ++   + PD++ +AKG+G G+P+GA++   E+A         +TFGGNP+    G  V
Sbjct: 225 YAYQHFNLKPDVIALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVV 284

Query: 365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKA 424
           +  ++K     H  +VG++   +L+ L +       V+GRGLM+G+EL  + K+      
Sbjct: 285 VDEVEK--LLPHVREVGNYFKEKLKELGKG-----KVKGRGLMLGLELERECKD------ 331

Query: 425 ETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALD 471
                  K  E G+L+      G V R  PP+   K+  D  +  L 
Sbjct: 332 ----YVLKALEKGLLINCTA--GKVLRFLPPLIIQKEHIDRAISVLR 372

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439

 Score =  289 bits (741), Expect = 2e-93
 Identities = 114/469 (24%), Positives = 202/469 (43%), Gaps = 45/469 (9%)

Query: 21  NICTSFSTAASASAVATTPPQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPL 80
            +      A  +  V ++                P++D +F++  ++      +Y+  P+
Sbjct: 4   KLAHLQRFAVLSRGVHSSVASATSVATKKTVQGPPTSDDIFEREYKYGAH---NYHPLPV 60

Query: 81  NIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAI 140
            +  GK  YL+D  GR+Y D  +    V+ GHCHP ++NA+  Q   L   +  + ++ +
Sbjct: 61  ALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVL 120

Query: 141 ADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR--------LSTGNLGMIALRNAYH 192
            ++ E +      N   V  +N+G EA E A  +AR        +      ++     + 
Sbjct: 121 GEYEEYITKLF--NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFW 178

Query: 193 GGSSGTIGLTALNTWKY---PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS 249
           G +   I  +   T      P   G    +    PY     +D     + LQD       
Sbjct: 179 GRTLSAISSSTDPTSYDGFGPFMPG-FDII----PY-----NDLPALERALQDP------ 222

Query: 250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET 309
             VA F+ E IQG  G V   PGYL  V ++  +   + IADE+QTG  RTG  +   + 
Sbjct: 223 -NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDY 280

Query: 310 QGVIPDIVTMAKGIGNGL-PLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVI 368
           + V PDIV + K +  GL P+ AV+   +I   +      +T+GGNP+     +A L V+
Sbjct: 281 ENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVL 340

Query: 369 DKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAV 428
           ++E    +   +G  L   L  L    D++  VRG+GL+  + +     +   A      
Sbjct: 341 EEENLAENADKLGIILRNELMKLP--SDVVTAVRGKGLLNAIVI--KETKDWDAWK---- 392

Query: 429 LFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477
           +  +LR+ G+L      HG++ R  PP+   +D+    ++ ++ ++   
Sbjct: 393 VCLRLRDNGLLAKPT--HGDIIRFAPPLVIKEDELRESIEIINKTILSF 439

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433

 Score =  286 bits (733), Expect = 3e-92
 Identities = 110/448 (24%), Positives = 187/448 (41%), Gaps = 44/448 (9%)

Query: 42  LPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDA 101
           L P           + +       ++      +Y   P+ +   K  +++D N +RY D 
Sbjct: 14  LVPRGSMEFVKDLKTPEDYINNELKYGAH---NYDPIPVVLKRAKGVFVYDVNDKRYYDF 70

Query: 102 FAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFV 161
            +   +V+ GHCHP++LNA+  Q+K L   +  +    +      L + +      V  +
Sbjct: 71  LSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLL--GYDKVLMM 128

Query: 162 NSGTEANELAMLMAR--------LSTGNLGMIALRNAYHGGSSGTIGLTALNTWK---YP 210
           N+G EANE A  + R        +      ++  +N + G + G I  +          P
Sbjct: 129 NTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGP 188

Query: 211 IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELA 270
                   V    PY      D     ++L+D         V  FI E IQG  G +  +
Sbjct: 189 FAPQ-FSKV----PYD-----DLEALEEELKDP-------NVCAFIVEPIQGEAGVIVPS 231

Query: 271 PGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPL 329
             YL+ VYDI +K   + +ADEVQTG GRTG          V PD++ + K +  G  P+
Sbjct: 232 DNYLQGVYDICKKYNVLFVADEVQTGLGRTG-KLLCVHHYNVKPDVILLGKALSGGHYPI 290

Query: 330 GAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLR 389
            AV+   +I  V+      +T+GGNP+ ++  +  L V+  E+   +   +G   L  L+
Sbjct: 291 SAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLK 350

Query: 390 TLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNV 449
              +   I+ DVRG+GL+  +E                 +  KL+E G++      H   
Sbjct: 351 RELKDSKIVRDVRGKGLLCAIEF-------KNELVNVLDICLKLKENGLITRDV--HDKT 401

Query: 450 FRIKPPMCFTKDDADFLVDALDYSMSKL 477
            R+ PP+C TK+  D   + +  ++   
Sbjct: 402 IRLTPPLCITKEQLDECTEIIVKTVKFF 429

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392

 Score =  280 bits (718), Expect = 1e-90
 Identities = 108/425 (25%), Positives = 193/425 (45%), Gaps = 50/425 (11%)

Query: 59  QVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVL 118
            + +    +      +Y+  P+ I + +  ++ D  G RY+D  +    V+ GH HP ++
Sbjct: 2   DIIELTDTYGAN---NYHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKII 58

Query: 119 NAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARL- 177
           NA+ +Q+  +   +  +    +  + E +A     N ++V  +N+G EA E A+  AR  
Sbjct: 59  NALIDQANRVTLTSRAFHSDQLGPWYEKVAKLT--NKEMVLPMNTGAEAVETAIKTARRW 116

Query: 178 -------STGNLGMIALRNAYHGGSSGTIGLTALNTWKY---PIPQGEIHHVVNPDPYHG 227
                        +I   + +HG + G + +++   +K    P+  G I  +    PY  
Sbjct: 117 AYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPG-IIVI----PYG- 170

Query: 228 SFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGV 287
               D       L+  I        A FI E IQG  G      G+LK   ++ +K   +
Sbjct: 171 ----DLE----ALKAAIT----PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVL 218

Query: 288 CIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGL-PLGAVVTTPEIANVMAQKI 346
            +ADE+QTG GRTG   +  +   V PD+  + K +G G+ P+       +I  V     
Sbjct: 219 FVADEIQTGLGRTGK-VFACDWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEPGS 277

Query: 347 QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGL 406
             +TFGGNP+  A  +A L V+++E+       +G  L+G+L+ +   + +I +VRG+GL
Sbjct: 278 HGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEID--NPMITEVRGKGL 335

Query: 407 MVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFL 466
            +G+EL    +             E+L+  G+L      H NV RI PP+  +++D ++ 
Sbjct: 336 FIGIELNEPARP----------YCEQLKAAGLLC--KETHENVIRIAPPLVISEEDLEWA 383

Query: 467 VDALD 471
              + 
Sbjct: 384 FQKIK 388

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448

 Score =  267 bits (685), Expect = 6e-85
 Identities = 112/430 (26%), Positives = 188/430 (43%), Gaps = 34/430 (7%)

Query: 74  HYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT 133
            Y + PL I  G    + D NG+ Y D F+ +     GH   ++ +AI +Q   + H+T 
Sbjct: 22  DYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTL 81

Query: 134 IYLHHAIA-DFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR---LSTGNLG---MIA 186
           + + +  A   AE L    P  L  V++ +SG EA E+A+ MA     + G       IA
Sbjct: 82  LGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIA 141

Query: 187 LRNAYHGGSSGTIGLTALN----TWKYPIPQGEIHHVVNPDPYHGSFGSDAA---RYAQD 239
           ++N YHG + G + + ++      +   +   E +    P  Y    G       +  ++
Sbjct: 142 MKNGYHGDTIGAVSVGSIELFHHVYGPLMF--ESYKAPIPYVYRSESGDPDECRDQCLRE 199

Query: 240 LQDHIDFGTSGKVAGFIAE-TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG 298
           L   ++     ++A    E  +QG  G + +  GYL  V ++      + I DEV TGFG
Sbjct: 200 LAQLLEEH-HEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFG 258

Query: 299 RTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFN-------T 350
           RTG   +  E + V PD++   KGI  G LP+     T +I        +         +
Sbjct: 259 RTGK-MFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHS 317

Query: 351 FGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM 410
           + GN +  A  L  L + + E      A+    L   L+ L      +GD+R  G M G 
Sbjct: 318 YTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHA-LPHVGDIRQLGFMCGA 376

Query: 411 ELVTDRKEKTPAKAETAV---LFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLV 467
           ELV  ++ K P  A+  +   +  K+RELG+L       G+V    PP+  T ++   +V
Sbjct: 377 ELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRP---LGDVIAFLPPLASTAEELSEMV 433

Query: 468 DALDYSMSKL 477
             +  ++ ++
Sbjct: 434 AIMKQAIHEV 443

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429

 Score =  224 bits (574), Expect = 1e-68
 Identities = 103/412 (25%), Positives = 168/412 (40%), Gaps = 34/412 (8%)

Query: 76  YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY 135
                 +V  +   L   +GRR +D  +       G+ HP +  A+  Q   + H     
Sbjct: 23  PLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGG 82

Query: 136 LHHAIA-DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG-----MIALRN 189
           + HA A +    L +  P  L+ V+  +SG+ A E+AM MA       G      +  RN
Sbjct: 83  ITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRN 142

Query: 190 AYHGGSSGTIGLTALNTWKYPIPQGEI-HHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT 248
            YHG + G + +   +   + + +G +  ++  P P     G    R        +    
Sbjct: 143 GYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA-AH 201

Query: 249 SGKVAGFIAE-TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF 307
             ++A  I E  +QG GG     P +LK +  I  + G + IADE+ TGFGRTG   +  
Sbjct: 202 RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK-LFAC 260

Query: 308 ETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQ--F---NTFGGNPVCSAGG 361
           E   + PDI+ + K +  G + L A +TT E+A  ++      F    TF GNP+  A  
Sbjct: 261 EHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAA 320

Query: 362 LAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTP 421
            A L +++    Q   AD+   L  +L   ++  +++ DVR  G +  +E          
Sbjct: 321 NASLAILESGDWQQQVADIEVQLREQLAPARD-AEMVADVRVLGAIGVVETTHPV----- 374

Query: 422 AKAETAVLFEKLRELGVLVGKGGLH---GNVFRIKPPMCFTKDDADFLVDAL 470
                A L +   E GV +         G +  + PP          L  A+
Sbjct: 375 ---NMAALQKFFVEQGVWI------RPFGKLIYLMPPYIILPQQLQRLTAAV 417

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457

 Score =  220 bits (564), Expect = 5e-67
 Identities = 109/470 (23%), Positives = 182/470 (38%), Gaps = 67/470 (14%)

Query: 27  STAASASAVATTPPQLPPFD-----HDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLN 81
            +  +A+    TP Q+   D     H   PY+                 SI      P+ 
Sbjct: 18  GSHMAAATGGLTPEQIIAVDGAHLWH---PYS-----------------SIGREAVSPVV 57

Query: 82  IVEGKMQYLF---DENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH 138
            V     +L    D      LDA +   T   GH HP +  A+  Q +++ H     L H
Sbjct: 58  AVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTH 117

Query: 139 AIA-DFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR---LSTGNLG---MIALRNAY 191
             A   A+ L    P  L  V+F +SG+ + E+A  MA       G  G   ++  R  Y
Sbjct: 118 EPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGY 177

Query: 192 HGGSSGTIGLTALNTWKYPIPQGEI-HHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG 250
           HG +   + +   +   + +    +   V  P        + +A +   L  H     +G
Sbjct: 178 HGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQH-----AG 232

Query: 251 KVAGFIAE-TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET 309
           ++A  + E  +QG GG     P YL  + DI R+   + I DE+ TGFGRTG+  +  + 
Sbjct: 233 ELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGA-LFAADH 291

Query: 310 QGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQ--F---NTFGGNPVCSAGGLA 363
            GV PDI+ + K +  G L L A + T ++A+ ++           TF  NP+  A  +A
Sbjct: 292 AGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVA 351

Query: 364 VLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAK 423
            + ++  +  +    ++ + L   L T +     + DVR  G +  +E            
Sbjct: 352 SVELLLGQDWRTRITELAAGLTAGLDTARA-LPAVTDVRVCGAIGVIECDRPV------- 403

Query: 424 AETAVLFEKLRELGVLVGKGGLH---GNVFRIKPPMCFTKDDADFLVDAL 470
            + AV      + GV +          N+    PP   T  +   +  A+
Sbjct: 404 -DLAVATPAALDRGVWL------RPFRNLVYAMPPYICTPAEITQITSAM 446

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831

 Score =  202 bits (515), Expect = 2e-57
 Identities = 90/484 (18%), Positives = 152/484 (31%), Gaps = 99/484 (20%)

Query: 79  PLNIVEGKMQYLFDENG----RRYLDAFAGIVTVSCGH-CHPDVLNAIFEQSKLLQHATT 133
            ++   G+   ++  +      +  DA A   T         ++   +   +    H   
Sbjct: 359 VIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMF 418

Query: 134 IYLHHAIA-DFAEALASKMP-GNLKVVYFVNSGTEANELAMLMAR---LSTGNLG----- 183
               +  A   AE L   +  G    VYF ++G+ A E+A+ MA        N       
Sbjct: 419 PENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEE 478

Query: 184 -------MIALRNAYHGGSSGTIG-------------------------------LTALN 205
                  +IALR +YHG    T+G                                 +  
Sbjct: 479 EKHIVVKVIALRGSYHGD---TLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNG 535

Query: 206 TWKYPIPQGEIHHVVNPDPYHGSFGSDAARY-----------------AQDLQDHIDFGT 248
           +W   +P+          P +G+F S    +                 ++ LQ+H     
Sbjct: 536 SWNISLPE----SFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQ 591

Query: 249 SGKVAGFIAE-TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF 307
           S  V   I E  I G GG   + P + +++ +  R      I DEV TGF R G      
Sbjct: 592 SAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV-ETTT 650

Query: 308 ETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVM---AQKIQF---NTFGGNPVCSAG 360
           E  G  PDI   AK +  G +PL   + T  + +     ++       +++  + +  A 
Sbjct: 651 ELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCAT 710

Query: 361 GLAVLRVIDKERRQAHCADVGSHLLGRLRTLQ----ERHDIIGDVRGRGLMVGMELVTDR 416
               ++         +    G  L              H  +  V   G +  +EL  D 
Sbjct: 711 AAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADA 770

Query: 417 KEKTPAKAETAVLFEKLRELGVLVGKGGLH---GNVFRIKPPMCFTKDDADFLVDALDYS 473
                A      L   LRE G+           GNV  +    C + +    L+  L   
Sbjct: 771 SNSGYASLYAKSLLIMLREDGIFT------RPLGNVIYLMCGPCTSPEICRRLLTKLYKR 824

Query: 474 MSKL 477
           + + 
Sbjct: 825 LGEF 828

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Length = 453

 Score =  133 bits (336), Expect = 2e-34
 Identities = 99/436 (22%), Positives = 160/436 (36%), Gaps = 77/436 (17%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAG----IVTVSCGHCHPDVLNAIFEQSKLLQHATTI 134
            L I + +  +  D +G  YLD F G    +     GH HP V  AI E    L H    
Sbjct: 40  GLFISDAQGVHKTDVDGNVYLDFFGGHGALV----LGHGHPRVNAAIAEA---LSHGVQY 92

Query: 135 YLHHAI-ADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG 193
              H +   +AE + +  P +++ + F  SGTE   LA+ +AR  TG   ++     YHG
Sbjct: 93  AASHPLEVRWAERIVAAFP-SIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHG 151

Query: 194 GS------SG--TIGLTALNTWKYP-IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHI 244
                         G  A      P +      + +           D     +   +H 
Sbjct: 152 WHDFSASGYNSHFDGQPA------PGVLPETTANTLLI-RP-----DDIEGMREVFANH- 198

Query: 245 DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHY 304
                  +A FIAE +    G   ++  +L+   ++ R+ G + I DEV +GF R G+H 
Sbjct: 199 ----GSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHG 253

Query: 305 WGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMA----QKI-QFNTFGGNPVCSA 359
                  V PD+  +AK    GLP G +    ++  V++    +K+    TF GNP+ +A
Sbjct: 254 M-QALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAA 312

Query: 360 GGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM-----ELVT 414
             +A +  I ++   A   D+G      +  L  R  +     GR     +        T
Sbjct: 313 AAIAAIDTILEDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTT 372

Query: 415 DRKEKTPAKAET------AVLFEKLRELGVLVGKGGLHGNVFRIKPP--MCF-----TKD 461
           D    T A+         A +   L   GV +                   F      ++
Sbjct: 373 DTGSITRAEVARPDVKMIAAMRMALILEGVDI-------------GGRGSVFLSAQHERE 419

Query: 462 DADFLVDALDYSMSKL 477
             + LV   D  + +L
Sbjct: 420 HVEHLVTTFDRVLDRL 435

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* Length = 465

 Score =  131 bits (332), Expect = 9e-34
 Identities = 82/350 (23%), Positives = 123/350 (35%), Gaps = 56/350 (16%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFA----GIVTVSCGHCHPDVLNAIFEQSKLLQHATTI 134
           PL I +G      D +G  Y++       G+     GH HP +  A+      L     +
Sbjct: 83  PLVIAQGTGSRFQDVDGHAYVNFLGEYTAGL----FGHSHPVIRAAVERA---LAVGLNL 135

Query: 135 YLHHAI-ADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG 193
                  A FAEA+  + P ++ +V F NSGTEAN +A+  A   TG   ++A    YHG
Sbjct: 136 STQTENEALFAEAVCDRFP-SIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHG 194

Query: 194 -----GSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT 248
                 S                P    +HVV    Y     +D    A  L+ H     
Sbjct: 195 GLLNFASGH-------------APTNAPYHVVLG-VY-----NDVEGTADLLKRH----- 230

Query: 249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG-FGRTG--SHYW 305
               A  + E + G GG V     +L L+     + G + I DEV T      G      
Sbjct: 231 GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTSRLSGGGAQEML- 289

Query: 306 GFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKI-----QFNTFGGNPVCSAG 360
                G+  D+ T+ K IG G+  GA     ++                TF  N +  + 
Sbjct: 290 -----GISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSA 344

Query: 361 GLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM 410
           G A L  I   +  +  +  G      L  +   +       G G +  +
Sbjct: 345 GHAALTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTI 394

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* Length = 434

 Score =  118 bits (298), Expect = 2e-29
 Identities = 94/439 (21%), Positives = 159/439 (36%), Gaps = 86/439 (19%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAG----IVTVSCGHCHPDVLNAIFEQSKLLQHATTI 134
           P  +  G+  YL+  +G R +D        I     GH HP VL A+ E    L      
Sbjct: 39  PFYVKRGEGAYLYTVDGARIVDLVLAYGPLI----LGHKHPRVLEAVEEA---LARGWLY 91

Query: 135 YLHHAI-ADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG 193
                     AE +   +     ++ FVNSGTEA   A+ +AR  TG   ++     YHG
Sbjct: 92  GAPGEAEVLLAEKILGYVK-RGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHG 150

Query: 194 GS--------SG--TIGLTALNTWKYP----IPQGEIHHVVNPDPYHGSFGSDAARYAQD 239
                     S     G+        P    +P+      +   PY+     D     + 
Sbjct: 151 SHDAVLVAAGSAAAHYGV--------PTSAGVPEAVARLTLVT-PYN-----DVEALERV 196

Query: 240 LQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGR 299
             ++       ++AG I E +    G +     +L  +  + R++G + I DEV TGF R
Sbjct: 197 FAEY-----GDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-R 250

Query: 300 TGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKI-------QFNTFG 352
            G          +  DI+ + K IG G P+GAV  + E+   M   +          TF 
Sbjct: 251 LGLEGA-QGYFNIEGDIIVLGKIIGGGFPVGAVAGSREV---M-SLLTPQGKVFNAGTFN 305

Query: 353 GNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM-- 410
            +P+  A GLA L+ +++E   +   +    L      + +R  +   +     M+ +  
Sbjct: 306 AHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFI 365

Query: 411 --ELVTDRKEKTPAKAET-AVLFEKLRELGVLVGKGGLHGNVFRIKPPMCF--------- 458
             E V++  +   A  +    L E++   GV +              P            
Sbjct: 366 GVEEVSNAAQARKADKKFYVKLHEEMLRRGVFI-------------APSNLEAVFTGLPH 412

Query: 459 TKDDADFLVDALDYSMSKL 477
             +  +  V+ L  S+  +
Sbjct: 413 QGEALEIAVEGLRSSLKTV 431

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} Length = 434

 Score =  117 bits (297), Expect = 4e-29
 Identities = 112/440 (25%), Positives = 176/440 (40%), Gaps = 88/440 (20%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAG-----IVTVSCGHCHPDVLNAIFEQSKLLQHATT 133
           P+ +  GK  Y +D +G +Y+D +       I     GH HP +  AI       ++   
Sbjct: 38  PIAMERGKGAYFWDVDGNKYID-YLAAYGPII----TGHAHPHITKAITTA---AENGVL 89

Query: 134 IYLHHAI-ADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYH 192
                A+   FA+ L   MP  L  V FVNSGTEA    + +AR  TG   ++     YH
Sbjct: 90  YGTPTALEVKFAKMLKEAMP-ALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYH 148

Query: 193 GGS--------SG--TIGLTALNTWKYP----IPQGEIHHVVNPDPYHGSFGSDAARYAQ 238
           G S        SG  T+G         P    +PQ     V+   P+     ++     +
Sbjct: 149 GHSDLVLVAAGSGPSTLGT--------PDSAGVPQSIAQEVITV-PF-----NNVETLKE 194

Query: 239 DLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG 298
            L          +VA  + E I G  G VE  PG+L+ V ++V +AG + I DEV T F 
Sbjct: 195 ALDKW-----GHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF- 248

Query: 299 RTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKI-------QFNTF 351
           R        +  GV PD+  + K IG GLP+GA     EI   M +++       Q  T 
Sbjct: 249 RFMYGGA-QDLLGVTPDLTALGKVIGGGLPIGAYGGKKEI---M-EQVAPLGPAYQAGTM 303

Query: 352 GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM- 410
            GNP   A G+A L V+ +E       ++G+ L   +     +H+I   +      + + 
Sbjct: 304 AGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVY 363

Query: 411 ---ELVTDRKEKTPAKAET-AVLFEKLRELGVLVGKGGLHGNVFRIKPPMCF-------- 458
                + D         E     F+ + + GV +              P  +        
Sbjct: 364 FTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNL-------------APSKYEAWFLTTE 410

Query: 459 -TKDDADFLVDALDYSMSKL 477
            TK+D ++ ++A+  + + L
Sbjct: 411 HTKEDIEYTIEAVGRAFAAL 430

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* Length = 427

 Score =  116 bits (292), Expect = 1e-28
 Identities = 96/368 (26%), Positives = 150/368 (40%), Gaps = 65/368 (17%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAG-----IVTVSCGHCHPDVLNAIFEQSKLLQHATT 133
           P+     K  Y +D +G RY+D + G     I    CGH HP+V+ A+      ++  T+
Sbjct: 35  PIVFDRVKDAYAWDVDGNRYID-YVGTWGPAI----CGHAHPEVIEALKVA---MEKGTS 86

Query: 134 IYLHHAI-ADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYH 192
                A+    AE +   +P ++++V FVNSGTEA    + + R  TG   +I     YH
Sbjct: 87  FGAPCALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYH 145

Query: 193 GGS--------SG--TIGLTALNTWKYP----IPQGEIHHVVNPDPYHGSFGSDAARYAQ 238
           G +        SG  T+GL        P    +P+    + +   PY     +D      
Sbjct: 146 GHADMFLVKAGSGVATLGL--------PSSPGVPKKTTANTLTT-PY-----NDLEAVKA 191

Query: 239 DLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG 298
              ++      G++AG I E I G  G +    G+L+ + +I  +   + + DEV TGF 
Sbjct: 192 LFAEN-----PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF- 245

Query: 299 RTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKI-------QFNTF 351
           R        E  GV PD+ T+ K IG GLP+GA     EI   M Q +       Q  T 
Sbjct: 246 RIAYGGV-QEKFGVTPDLTTLGKIIGGGLPVGAYGGKREI---M-QLVAPAGPMYQAGTL 300

Query: 352 GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM- 410
            GNP+    G+  L ++ +     +   +   L   L  + +             M G  
Sbjct: 301 SGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFF 360

Query: 411 ---ELVTD 415
                V +
Sbjct: 361 FTEGPVHN 368

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} Length = 429

 Score =  114 bits (287), Expect = 7e-28
 Identities = 109/441 (24%), Positives = 165/441 (37%), Gaps = 89/441 (20%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAG-----IVTVSCGHCHPDVLNAIFEQSKLLQHATT 133
           PL I      YLFD +G+ Y+D + G     I     GH HP +  A+ E    ++   +
Sbjct: 36  PLFIERADGAYLFDVDGKAYID-YVGSWGPMI----LGHNHPAIRQAVIEA---VERGLS 87

Query: 134 IYLHHAI-ADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYH 192
                 +    A+ +   +P  + +V  VNSGTEA   A+ +AR  TG   +I     YH
Sbjct: 88  FGAPTEMEVKMAQLVTDLVP-TMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYH 146

Query: 193 GGS--------SG--TIGLTALNTWKYP----IPQGEIHHVVNPDPYHGSFGSDAARYAQ 238
           G +        SG  T+G         P    +P     H +    Y     +D A   Q
Sbjct: 147 GHADCLLVKAGSGALTLGQ--------PNSPGVPTDFAKHTLTC-TY-----NDLASVRQ 192

Query: 239 DLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG 298
             + +       +VA  I E + G    +   P +L  +  +  + G + I DEV TGF 
Sbjct: 193 AFEQY-----PQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF- 246

Query: 299 RTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKI-------QFNTF 351
           R        +   VIPD+  + K IG G+P+GA     E+   M   +       Q  T 
Sbjct: 247 RVALAGA-QDYYHVIPDLTCLGKIIGGGMPVGAFGGRREV---M-NALAPTGPVYQAGTL 301

Query: 352 GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM- 410
            GNP+  A G A L  I +        ++   L   LR   +  +I   V   G M G+ 
Sbjct: 302 SGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLF 361

Query: 411 ----ELVTDRKEKTPAKAET-AVLFEKLRELGVLVGKGGLHGNVFRIKPPMCF------- 458
               + VT  ++      E     F  + E GV +              P  F       
Sbjct: 362 FTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYL-------------APSAFEAGFMSL 408

Query: 459 --TKDDADFLVDALDYSMSKL 477
             + +D    V+A     +KL
Sbjct: 409 AHSNEDIQKTVNAARRCFAKL 429

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* Length = 429

 Score =  112 bits (284), Expect = 2e-27
 Identities = 96/368 (26%), Positives = 149/368 (40%), Gaps = 66/368 (17%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAG-----IVTVSCGHCHPDVLNAIFEQSKLLQHATT 133
           PL +  GK   ++D +G  Y+D +       I     GH +  V+ A+       +  T+
Sbjct: 36  PLFMERGKGSKVYDIDGNEYID-YVLSWGPLI----HGHANDRVVEALKAV---AERGTS 87

Query: 134 IYLHHAI-ADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYH 192
                 I    A+ +  ++P ++++V  VNSGTEA   A+ +AR  TG   ++     YH
Sbjct: 88  FGAPTEIENKLAKLVIERVP-SIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYH 146

Query: 193 GGS--------SG--TIGLTALNTWKYP----IPQGEIHHVVNPDPYHGSFGSDAARYAQ 238
           G          SG  T+GL        P    +P+G   + +    Y+     D      
Sbjct: 147 GHGDSLLIKAGSGVATLGL--------PDSPGVPEGVAKNTITV-AYN-----DLESVKY 192

Query: 239 DLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG 298
             +          +A  I E + G  G V   PG+L+ + ++  + G + I DEV TGF 
Sbjct: 193 AFEQF-----GDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF- 246

Query: 299 RTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKI-------QFNTF 351
           R   +       GV PD+  + K IG GLP+GA     EI   M +++       Q  T 
Sbjct: 247 RVAYNCG-QGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEI---M-RQVAPSGPIYQAGTL 301

Query: 352 GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM- 410
            GNP+  A G   L  +  E            L   LR   E+H I   +   G M+G+ 
Sbjct: 302 SGNPLAMAAGYETLVQLTPE-SYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIF 360

Query: 411 ---ELVTD 415
              E V +
Sbjct: 361 FTDEPVIN 368

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} Length = 424

 Score =  107 bits (270), Expect = 2e-25
 Identities = 101/369 (27%), Positives = 157/369 (42%), Gaps = 67/369 (18%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAG-----IVTVSCGHCHPDVLNAIFEQSKLLQHATT 133
           P  +V G+  Y++D +G RYLD +       I     GH HP VL  + E    L+   T
Sbjct: 35  PPFLVRGEGAYVWDADGNRYLD-YVMSWGPLI----LGHAHPKVLARVRET---LERGLT 86

Query: 134 IYLHHAI-ADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYH 192
                 +    A+ +    P  + +V FVNSGTEA   A+ +AR  TG   ++  R  YH
Sbjct: 87  FGAPSPLEVALAKKVKRAYP-FVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYH 145

Query: 193 GGS--------SG--TIGLTALNTWKYP----IPQGEIHHVVNPDPYHGSFGSDAARYAQ 238
           G +        SG  T+G+        P    +P+      +    Y+     D     +
Sbjct: 146 GHADGLLVEAGSGALTLGV--------PSSAGVPEEYAKLTLVL-EYN-----DPEGLRE 191

Query: 239 DLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG 298
            L+         ++A  I E + G  G +     +LK +++  +  G + IADEV TGF 
Sbjct: 192 VLKRR-----GEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF- 244

Query: 299 RTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKI-------QFNTF 351
           R        E  G+ PD+VT+ K +G GLP  A     EI   M +K+       Q  T 
Sbjct: 245 RLAFGGA-TELLGLKPDLVTLGKILGGGLPAAAYAGRREI---M-EKVAPLGPVYQAGTL 299

Query: 352 GGNPVCSAGGLAVLRVIDKERRQ-AHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM 410
            GNP+  A GLA L ++++     A+  D+G+ L   L+ + +   +   V   G M+ +
Sbjct: 300 SGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITV 359

Query: 411 ----ELVTD 415
                 V  
Sbjct: 360 FFTEGPVVT 368

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	477
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	100.0
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	100.0
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	100.0
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	100.0
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	100.0
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	100.0
3hmu_A	472	Aminotransferase, class III; structural genomics,	100.0
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	100.0
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	100.0
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	100.0
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	100.0
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	100.0
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	100.0
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	100.0
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	100.0
1z7d_A	433	Ornithine aminotransferase; structural genomics co	100.0
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	100.0
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	100.0
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	100.0
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	100.0
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	100.0
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	100.0
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	100.0
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	100.0
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	100.0
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	100.0
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	100.0
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	100.0
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	100.0
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	100.0
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	100.0
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	100.0
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	100.0
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	100.0
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	100.0
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	100.0
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	100.0
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	100.0
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	100.0
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	100.0
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	100.0
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	100.0
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	100.0
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	100.0
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	100.0
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	100.0
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	100.0
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	100.0
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	100.0
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	100.0
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	100.0
3nra_A	407	Aspartate aminotransferase; structural genomics, j	100.0
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	100.0
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	100.0
1vp4_A	425	Aminotransferase, putative; structural genomics, j	100.0
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	100.0
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	100.0
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	100.0
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	100.0
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	100.0
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	100.0
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	100.0
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	100.0
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	100.0
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	100.0
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	100.0
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	100.0
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	100.0
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	100.0
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	100.0
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	100.0
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	100.0
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	100.0
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	100.0
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	100.0
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.98
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.98
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.97
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.97
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.97
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.97
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.97
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.97
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.97
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.97
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.97
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.97
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.97
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.97
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.97
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.97
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.97
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.97
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.97
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.97
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.97
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.97
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.97
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.97
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.97
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.96
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.96
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.96
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.96
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.96
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.96
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.96
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.96
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.96
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.96
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.96
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.96
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.96
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.96
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.96
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.96
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.96
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.96
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.96
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.95
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.95
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.95
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.95
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.95
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.95
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.95
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.95
1svv_A	359	Threonine aldolase; structural genomics, structura	99.95
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.95
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.95
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.95
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.94
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.94
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.94
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.94
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.94
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.94
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.94
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.94
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.94
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.94
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.94
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.93
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.93
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.93
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.93
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.93
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.93
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.93
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.93
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.93
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.92
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.92
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.92
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.92
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.92
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.92
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.92
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.92
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.92
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.92
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.91
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.91
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.91
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.91
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.91
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.91
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.91
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.9
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.9
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.9
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.9
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.9
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.9
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.9
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.9
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.9
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.89
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.89
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.89
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.89
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.89
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.89
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.89
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.89
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.89
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.88
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.88
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.88
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.87
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.87
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.87
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.86
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.86
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.86
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.86
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.85
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.85
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.84
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.84
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.84
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.83
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.82
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.82
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.82
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.82
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.82
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.8
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.79
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.79
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.79
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.78
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.78
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.76
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.76
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.76
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.75
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.73
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.72
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.7
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.68
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.67
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.64
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.63
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.62
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.62
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.59
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.39
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.37
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.3
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	98.71

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=100.00  E-value=3.9e-83  Score=654.43  Aligned_cols=422  Identities=30%  Similarity=0.475  Sum_probs=373.6

Q ss_pred             CCCCCCHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc
Q 011777           51 PYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH  130 (477)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~  130 (477)
                      ++|||+|+++++++.+++++++..  ..|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.|
T Consensus        21 ~iPGP~s~~l~~r~~~~~~~~~~~--~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~   98 (456)
T 4atq_A           21 AFPGPKSQALAERRSAVVAAGVAS--GVPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTH   98 (456)
T ss_dssp             SSSCHHHHHHHHHHHHHBCTTCCC--SCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSC
T ss_pred             CCCChHHHHHHHHHHHhCCCCCCC--CCCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccC
Confidence            689999999999999999877544  358999999999999999999999999999999999999999999999999877


Q ss_pred             cccc-cCChHHHHHHHHHHhhCCC-CCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCC-C
Q 011777          131 ATTI-YLHHAIADFAEALASKMPG-NLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNT-W  207 (477)
Q Consensus       131 ~~~~-~~~~~~~~l~~~La~~~~~-~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~-~  207 (477)
                      .... .+++...+|+++|+++.|. ..++++|+||||||||.|||+||.+++|.+||+|+++|||++.++++.++... +
T Consensus        99 ~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~  178 (456)
T 4atq_A           99 TCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPY  178 (456)
T ss_dssp             CTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTT
T ss_pred             cccCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCcccc
Confidence            6543 3467888999999999986 46899999999999999999999999999999999999999999999887653 3


Q ss_pred             CCCCC--CCCeeeecCCCCcCCCCCC-CHHHHHHHHHHHHh-ccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHH
Q 011777          208 KYPIP--QGEIHHVVNPDPYHGSFGS-DAARYAQDLQDHID-FGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK  283 (477)
Q Consensus       208 ~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~le~~i~-~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~  283 (477)
                      +....  ..++.+++.+++++..... +..++.+...+.++ ..+++++|+||+||+||++|+++|+++||++|+++|++
T Consensus       179 ~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~  258 (456)
T 4atq_A          179 KTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKE  258 (456)
T ss_dssp             TTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHH
T ss_pred             ccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhh
Confidence            33332  2578888888877655432 23333333322222 33457899999999999999999999999999999999


Q ss_pred             hCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHH
Q 011777          284 AGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLA  363 (477)
Q Consensus       284 ~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a  363 (477)
                      ||++||+||||||||||| ++|+++++|+.|||+|++|++|||+|+|++++++++++.+....|++||++||++|+|+++
T Consensus       259 ~gillI~DEV~tG~GRtG-~~~a~e~~gv~PDivt~gK~lggg~P~~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaala  337 (456)
T 4atq_A          259 KGIVFIADEVQSGFCRTG-EWFAVDHEGVVPDIITMAKGIAGGLPLSAITGRADLLDAVHPGGLGGTYGGNPVACAAALA  337 (456)
T ss_dssp             HTCEEEEECTTTTTTTTS-SSSGGGGTTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHH
T ss_pred             cCCceEecccccccCCcc-ccccccccCCCCchhhhhhcccCcCCceeeEecHHHHhcccccCCCCCCCCChHHHHhhHH
Confidence            999999999999999999 8999999999999999999999999999999999999999888899999999999999999


Q ss_pred             HHHhhchhhHHHHHHHHHHHHHHHHHHHHHhC-----CCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCc
Q 011777          364 VLRVIDKERRQAHCADVGSHLLGRLRTLQERH-----DIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGV  438 (477)
Q Consensus       364 ~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~-----~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv  438 (477)
                      +|++++++++.+++++++++++++|+++..++     +.+.+|||.|+|++++++.+. .+.|+......+.+.|+++||
T Consensus       338 ~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~-~~~~~~~~~~~v~~~~~~~Gv  416 (456)
T 4atq_A          338 AIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPG-SKEPNAELTKAVAAACLKEGV  416 (456)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTT-SCCBCHHHHHHHHHHHHHTTE
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCC-CCCcCHHHHHHHHHHHHHCCC
Confidence            99999999999999999999999999998876     568999999999999998653 456777778889999999999


Q ss_pred             eeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          439 LVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       439 ~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ++.+++..+++|||.||+++|++|||+++++|+++++.
T Consensus       417 l~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~al~a  454 (456)
T 4atq_A          417 IILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIKA  454 (456)
T ss_dssp             ECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            99988888899999999999999999999999999974

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=100.00  E-value=9.5e-79  Score=624.19  Aligned_cols=413  Identities=26%  Similarity=0.411  Sum_probs=358.8

Q ss_pred             HHHHHHhhhcCCCccc----cccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-
Q 011777           59 QVFQKRKQFLGPSIFH----YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-  133 (477)
Q Consensus        59 ~~~~~~~~~~~~~~~~----~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~-  133 (477)
                      .+.+++++|.+.....    ....|++|++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.+... 
T Consensus        26 ~~~~~~~~~~~h~~t~~~~~~~~~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~  105 (473)
T 4e3q_A           26 SWEARAETYSLYGFTDMPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAF  105 (473)
T ss_dssp             SHHHHHHHHBCCSSCCHHHHHHHCCEEEEEEETTEEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCCC
T ss_pred             cHHHHHhhhcCCCCCChhhhccCCCEEEEeeecCEEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhccccccc
Confidence            4667778887644322    12458999999999999999999999999999999999999999999999999765433 


Q ss_pred             -ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccCCC
Q 011777          134 -IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTALNT  206 (477)
Q Consensus       134 -~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~  206 (477)
                       .+.++...+|+++|++..|.++++|+|+||||||||.|||+||.+      +++.+||+|+++|||.+.++++.++.+.
T Consensus       106 ~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~  185 (473)
T 4e3q_A          106 FGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPY  185 (473)
T ss_dssp             TTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGG
T ss_pred             ccccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCcccccccccccc
Confidence             235788899999999999988999999999999999999999876      5678999999999999999999987653


Q ss_pred             CCC-CCCCCCeeeecCCCCcCCCCCCC-HH----HHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHH
Q 011777          207 WKY-PIPQGEIHHVVNPDPYHGSFGSD-AA----RYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDI  280 (477)
Q Consensus       207 ~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l  280 (477)
                      .+. ..+.+++.+++.|+.++.....+ ..    .+.+++++.+...+++++|+||+||+||++|+++|+++||++|+++
T Consensus       186 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~l  265 (473)
T 4e3q_A          186 NSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPI  265 (473)
T ss_dssp             GGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHH
T ss_pred             ccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHH
Confidence            322 23346888888888776544332 22    2456778887766677899999999999999999999999999999


Q ss_pred             HHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcc-------cccccCCC
Q 011777          281 VRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQ-------KIQFNTFG  352 (477)
Q Consensus       281 ~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~-------~~~~~t~~  352 (477)
                      |++||++||+||||||||||| ++|+++++|+.||++|++|+++|| +|+|++++++++++.+..       ..|++||+
T Consensus       266 c~~~gilLI~DEV~tGfGRtG-~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~  344 (473)
T 4e3q_A          266 LRKYDIPVISDEVICGFGRTG-NTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTAS  344 (473)
T ss_dssp             HHHTTCCEEEECTTTSSSTTS-SSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTT
T ss_pred             hcccceEEeccCccccCCccc-chhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhccccccccccccCCCCC
Confidence            999999999999999999999 899999999999999999999998 899999999999987743       36899999


Q ss_pred             CcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCcc---HHHHHHH
Q 011777          353 GNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA---KAETAVL  429 (477)
Q Consensus       353 ~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~---~~~~~~~  429 (477)
                      +||++|++++++|++++++++++++++++++|+++|+++. +++.+.++||.|+|++++++.+..++.+.   ......+
T Consensus       345 Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~-~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~  423 (473)
T 4e3q_A          345 GHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIA-ERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERI  423 (473)
T ss_dssp             TCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHT-TSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHH
T ss_pred             CCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHh-cCCCeeEEeecceEEEEEEecCccccccccccHHHHHHH
Confidence            9999999999999999999999999999999999999986 45778999999999999998877665552   2345678


Q ss_pred             HHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          430 FEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       430 ~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .+.|+++||++.+.   ++.+||+||+++|++|||+++++|++++++
T Consensus       424 ~~~~~~~Gll~~~~---g~~i~l~PPL~it~~eid~~~~~l~~al~~  467 (473)
T 4e3q_A          424 ANTCTDLGLICRPL---GQSVVLCPPFILTEAQMDEMFDKLEKALDK  467 (473)
T ss_dssp             HHHHHHTTEECEEE---TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCcEEEec---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999876   589999999999999999999999998865

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=100.00  E-value=5.9e-73  Score=576.60  Aligned_cols=392  Identities=23%  Similarity=0.330  Sum_probs=337.0

Q ss_pred             CCCHHHHHHHHhhhcCCCc---c-ccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc
Q 011777           54 GPSADQVFQKRKQFLGPSI---F-HYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ  129 (477)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~---~-~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~  129 (477)
                      .|+|++++++++++++-+.   . .+.+.|+++++|+|+||||+|||+||||.+|++++++||+||+|++|+.+|++++.
T Consensus        41 ~p~s~~~~~~a~~~~pgg~~~~~~~~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~  120 (454)
T 4ao9_A           41 NPASQRQFEAQARYMPGANSRSVLFYAPFPLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGI  120 (454)
T ss_dssp             CHHHHHHHHHHTTTSGGGCSSGGGCCSSCCCEEEEEETTEEEETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCS
T ss_pred             CcHhHHHHHHHhhhCCCCCCCCccccCCCCccEEEeecCEEEECCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCC
Confidence            5788999999999986322   2 24456999999999999999999999999999999999999999999999998865


Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +..  ..++...+++++|++++|. +++|+|+|||||||+.|||+||.+|+|++||+|+++|||++.+..+.+...... 
T Consensus       121 ~~~--~~~~~~~~lae~l~~~~p~-~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~-  196 (454)
T 4ao9_A          121 NLT--GHNLLEGRLARLICERFPQ-IEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVP-  196 (454)
T ss_dssp             CCC--SEESSHHHHHHHHHHHSTT-CSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCC-
T ss_pred             Ccc--CCcHHHHHHHHHHHHhCCC-CCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCC-
Confidence            432  3456678999999999985 789999999999999999999999999999999999999998877665422111 


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                          .++...        ++++     ++.+++++++. .+++++||+||++|++|+++|+++||++|+++|++||++||
T Consensus       197 ----~~~~~~--------p~nd-----~~~l~~~l~~~-~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI  258 (454)
T 4ao9_A          197 ----FDFLVL--------PYND-----AQTARAQIERH-GPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLV  258 (454)
T ss_dssp             ----SEEEEE--------CTTC-----HHHHHHHHHHT-GGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEE
T ss_pred             ----CCcccC--------CCch-----HHHHHHHHhhc-CCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEE
Confidence                122222        2332     57788888743 45799999999999999999999999999999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhccc----ccccCCCCcHHHHHHHHHHH
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK----IQFNTFGGNPVCSAGGLAVL  365 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~----~~~~t~~~~~~~~aaa~a~l  365 (477)
                      +|||||  ||+| .+|+++++|+.||++|++|++|||+|+|++++++++++.+...    .|++||++||++|+|++++|
T Consensus       259 ~DEV~t--GR~G-~~~a~e~~gv~PDi~t~gK~lggG~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L  335 (454)
T 4ao9_A          259 FDEVMT--SRLA-PHGLANKLGIRSDLTTLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGL  335 (454)
T ss_dssp             EECTTG--GGGS-TTCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHH
T ss_pred             EECCCc--CCCc-cccchhccCCCCcEEEeccccCCCCcceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHH
Confidence            999999  4999 7888999999999999999999999999999999999988653    48899999999999999999


Q ss_pred             HhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCC-----CCccHHHHHHHHHHHHHcCcee
Q 011777          366 RVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKE-----KTPAKAETAVLFEKLRELGVLV  440 (477)
Q Consensus       366 ~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~~Gv~v  440 (477)
                      ++++++++++++++++++|+++|+++.++++.+.+++|.|+|++++|+.++..     ...+......+...|+++||++
T Consensus       336 ~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~  415 (454)
T 4ao9_A          336 TKLFTPEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYS  415 (454)
T ss_dssp             HHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEEC
T ss_pred             HHHhccChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEE
Confidence            99999999999999999999999999999999999999999999999754311     1223445567888999999999


Q ss_pred             eccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          441 GKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       441 ~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .|.+      ++.+++.+|++|||+++++|++++.+
T Consensus       416 ~p~~------~~~~s~~~T~~dId~~l~al~~~l~~  445 (454)
T 4ao9_A          416 SPRG------FVVLSLPLTDADIDRYVAAIGSFIGG  445 (454)
T ss_dssp             CTTC------EEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCC------CEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence            8753      34567889999999999999999875

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=100.00  E-value=2.3e-68  Score=549.94  Aligned_cols=419  Identities=34%  Similarity=0.507  Sum_probs=368.8

Q ss_pred             CCCCCCHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc
Q 011777           51 PYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH  130 (477)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~  130 (477)
                      +.++|++++++++.+++++.+..  ...|+++++|+|+||||.||++||||.+++++++|||+||+|++|+.+|++++.+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~G~~v~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~   98 (453)
T 4ffc_A           21 PLPGPRSGALAERRRAAVSAGVG--STAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTH   98 (453)
T ss_dssp             CSSCHHHHHHHHHHHHHBCTTTC--CSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSC
T ss_pred             CCCCCCHHHHHHHHHHhcCCCcC--CCCCceEEeeecCEEEeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccc
Confidence            46788999999999999976543  2568999999999999999999999999999999999999999999999998765


Q ss_pred             cc-cccCChHHHHHHHHHHhhCCCC-CCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCC-CC
Q 011777          131 AT-TIYLHHAIADFAEALASKMPGN-LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALN-TW  207 (477)
Q Consensus       131 ~~-~~~~~~~~~~l~~~La~~~~~~-~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~  207 (477)
                      .. ..+.++...+|+++|++.++.+ .++|+|+|||+|||+.|+|+++.++++++||+++++|||++.+++++++.. .+
T Consensus        99 ~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~  178 (453)
T 4ffc_A           99 TCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPY  178 (453)
T ss_dssp             CTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTT
T ss_pred             cccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCccc
Confidence            43 3467888999999999999754 579999999999999999999998999999999999999999999988754 34


Q ss_pred             CCCCCC--CCeeeecCCCCcCCCCCCCHHHHH----HHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHH
Q 011777          208 KYPIPQ--GEIHHVVNPDPYHGSFGSDAARYA----QDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIV  281 (477)
Q Consensus       208 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~  281 (477)
                      +..+.+  .++..++.+.+++++++.+.....    +.|++.+   +++++++||+||+++++|+++++++||++|+++|
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i---~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~  255 (453)
T 4ffc_A          179 KSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQI---GAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWA  255 (453)
T ss_dssp             TTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHT---CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHH
T ss_pred             ccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhc---CCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHH
Confidence            333322  478888888888877665543333    3344333   3467999999999999999999999999999999


Q ss_pred             HHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHH
Q 011777          282 RKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGG  361 (477)
Q Consensus       282 ~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa  361 (477)
                      ++||++||+||||+||||+| .+++++++++.||++||||++++|+|+||+++++++++.+....+++||++|+++++|+
T Consensus       256 ~~~~~llI~DEv~~g~g~~g-~~~a~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa  334 (453)
T 4ffc_A          256 SENGVVFIADEVQTGFARTG-AWFASEHEGIVPDIVTMAKGIAGGMPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAA  334 (453)
T ss_dssp             HHHTCEEEEECTTTTTTTTS-SSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHH
T ss_pred             HHcCCEEEEecCccCCCccc-ccchhhhcCCCcchHhhhhhhcCCcCeEEEEECHHHHhhhcccCcCCCCCcCHHHHHHH
Confidence            99999999999999999999 68888999999999999999999999999999999999988778899999999999999


Q ss_pred             HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceee
Q 011777          362 LAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVG  441 (477)
Q Consensus       362 ~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~  441 (477)
                      +++|+.++++++.+++++++++++++|+++..+++.+..+++.|+|+++++.. ...+.|+......+.+.|+++||++.
T Consensus       335 ~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~Gv~v~  413 (453)
T 4ffc_A          335 VAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVK-PGTLEPDAALTKSIAAEALSQGVLIL  413 (453)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEBC-TTSCCBCHHHHHHHHHHHHHTTEECC
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEec-CcccCCCHHHHHHHHHHHHhCCCEEe
Confidence            99999988888999999999999999999988899889999999999999975 33445666677889999999999999


Q ss_pred             ccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          442 KGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       442 ~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +++.+++++||+||+.+|+++|++++++|++++++
T Consensus       414 ~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  448 (453)
T 4ffc_A          414 TCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRA  448 (453)
T ss_dssp             EECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            98777799999999999999999999999999864

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=100.00  E-value=3.6e-68  Score=548.26  Aligned_cols=422  Identities=32%  Similarity=0.429  Sum_probs=367.6

Q ss_pred             CCCCCCHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc
Q 011777           51 PYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH  130 (477)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~  130 (477)
                      +.++|++++++++.+++++.+..  ...|+++++|+|+||||.||++||||.++++++++||+||+|++|+.+|++++.+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~   95 (451)
T 3oks_A           18 AIPGPRSQALIDRKGTAVARGVG--TTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTH   95 (451)
T ss_dssp             CSSCHHHHHHHHHHHHHBCTTBC--CSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSC
T ss_pred             CCCCCcHHHHHHHHHhhccCCcC--CCCCceEEEeecCEEEECCCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhccc
Confidence            57789999999999999977543  2468999999999999999999999999999999999999999999999998765


Q ss_pred             cc-cccCChHHHHHHHHHHhhCCCC-CCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCC-CC
Q 011777          131 AT-TIYLHHAIADFAEALASKMPGN-LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALN-TW  207 (477)
Q Consensus       131 ~~-~~~~~~~~~~l~~~La~~~~~~-~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~  207 (477)
                      .. ..+.++...+|+++|++.++.. .++|+|+|||+|||+.|+|+++.++++++||+++++|||++.+++++++.. .+
T Consensus        96 ~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~  175 (451)
T 3oks_A           96 TCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPY  175 (451)
T ss_dssp             CTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTT
T ss_pred             ccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCccc
Confidence            43 3467888999999999999754 579999999999999999999998999999999999999999999988753 44


Q ss_pred             CCCCCC--CCeeeecCCCCcCCCC-CCC----HHHHHHHHHHHHhc-cCCCCeeEEEecccCCCCCeeeCCchhHHHHHH
Q 011777          208 KYPIPQ--GEIHHVVNPDPYHGSF-GSD----AARYAQDLQDHIDF-GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYD  279 (477)
Q Consensus       208 ~~~~~~--~~~~~~~~~~~~~~~~-~~~----~~~~~~~le~~i~~-~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~  279 (477)
                      +..+.+  .++..++.+.++++++ +.+    ....++.+++.++. .+++++++||+||+++++|+++++++||++|++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~  255 (451)
T 3oks_A          176 KDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLD  255 (451)
T ss_dssp             TTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHH
T ss_pred             ccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHH
Confidence            433322  4777887776665532 111    22345555555542 234689999999999999999999999999999


Q ss_pred             HHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHH
Q 011777          280 IVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSA  359 (477)
Q Consensus       280 l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~a  359 (477)
                      +|++||++||+||||+||||+| .+++++++++.||++||||++++|+|+|++++++++++.+....+.+||++|+++++
T Consensus       256 l~~~~g~~lI~DEv~~g~g~~g-~~~~~~~~~~~pdi~t~sK~l~~G~~iG~v~~~~~~~~~~~~~~~~~t~~~~~~~~a  334 (451)
T 3oks_A          256 WCRKNDVVFIADEVQTGFARTG-AMFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACA  334 (451)
T ss_dssp             HHHHTTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCEEEEEEHHHHTCSCTTSBCCSSSSCHHHHH
T ss_pred             HHHHcCCEEEEEecccCCCccc-cchhhhhcCCCCCeeeehhhhhCCcceEEEEECHHHHhhhcCCCcCCCCCCCHHHHH
Confidence            9999999999999999999999 688889999999999999999999999999999999999887788999999999999


Q ss_pred             HHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCce
Q 011777          360 GGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVL  439 (477)
Q Consensus       360 aa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~  439 (477)
                      +++++|+.++++++.+++++++++++++|+++..+++.+..+++.|+|+++++.. ...+.|.......+.+.|+++||+
T Consensus       335 aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~Gv~  413 (451)
T 3oks_A          335 AALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVK-AGTTEPDADLTKALCAGAHAAGVI  413 (451)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBS-TTSCCBCHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEec-CccCCCCHHHHHHHHHHHHhCCcE
Confidence            9999999988888999999999999999999988899889999999999999975 334446666778899999999999


Q ss_pred             eeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          440 VGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       440 v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +.+++.+++++||+||+.+|+++|++++++|++++++
T Consensus       414 v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  450 (451)
T 3oks_A          414 VLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG  450 (451)
T ss_dssp             CEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred             EecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            9998877899999999999999999999999999875

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=100.00  E-value=6.6e-68  Score=549.32  Aligned_cols=413  Identities=24%  Similarity=0.385  Sum_probs=355.8

Q ss_pred             HHHHHHHhhhcCCCccc---c-ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc
Q 011777           58 DQVFQKRKQFLGPSIFH---Y-YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT  133 (477)
Q Consensus        58 ~~~~~~~~~~~~~~~~~---~-~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~  133 (477)
                      ..+.++.+++++.....   + ...|+++++|+|+|+||.||++||||.+|++++++||+||+|++|+.+|++++.+...
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~   91 (476)
T 3i5t_A           12 GAVGAAMRDHILLPAQEMAKLGKSAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASP   91 (476)
T ss_dssp             -CHHHHHHHHBCCTTEEGGGTTTCCCCBEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCT
T ss_pred             hHHHhhcccccccCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccc
Confidence            45677777787654322   1 1258999999999999999999999999999999999999999999999998766444


Q ss_pred             -ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccCCC
Q 011777          134 -IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTALNT  206 (477)
Q Consensus       134 -~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~  206 (477)
                       .+.++...+|+++|++++|.+.++|+|+|||+|||+.|+++++.+      +++++||+++++|||++.+++++++.+.
T Consensus        92 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~  171 (476)
T 3i5t_A           92 WYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTG  171 (476)
T ss_dssp             TTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGG
T ss_pred             CccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChh
Confidence             577899999999999999877899999999999999999999988      8899999999999999999999888766


Q ss_pred             CCCCCC--CCCeeeecCCCCcCCCCCCCHHH----HHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHH
Q 011777          207 WKYPIP--QGEIHHVVNPDPYHGSFGSDAAR----YAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDI  280 (477)
Q Consensus       207 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l  280 (477)
                      ++....  ..++.+++.|..+++ ++.+...    ++++|+++++...++++++||+||++|++|+++++++||++|+++
T Consensus       172 ~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~l  250 (476)
T 3i5t_A          172 NWPNFDIAQDRISFLSSPNPRHA-GNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAI  250 (476)
T ss_dssp             GCTTSCCCCTTEEEECCCCGGGC-TTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHH
T ss_pred             hccccCCCCCCcEEeCCCccccc-CCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHH
Confidence            543332  357888888888877 6655433    367888888744446899999999999999999999999999999


Q ss_pred             HHHhCcEEEEcCcccCccCCCCCCcccc-ccCCCcceeeecccccCc-cceEEEEeCHHHHHhhccc-------ccccCC
Q 011777          281 VRKAGGVCIADEVQTGFGRTGSHYWGFE-TQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK-------IQFNTF  351 (477)
Q Consensus       281 ~~~~gillI~DEv~~gfgr~G~~~~~~~-~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~-------~~~~t~  351 (477)
                      |++||++||+||||+||||+| ++|+++ ++++.||++||||++++| +|+|++++++++++.+...       .+++||
T Consensus       251 c~~~gillI~DEv~~g~gr~G-~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~  329 (476)
T 3i5t_A          251 CEKHDILYISDEVVTGFGRCG-EWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTY  329 (476)
T ss_dssp             HHHTTCEEEEECTTTTTTTTS-SSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTT
T ss_pred             HHHcCCEEEEEecccCCcccc-CceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCC
Confidence            999999999999999999999 788888 999999999999999999 9999999999999998753       677999


Q ss_pred             CCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccH---HHHHH
Q 011777          352 GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAK---AETAV  428 (477)
Q Consensus       352 ~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~---~~~~~  428 (477)
                      ++||++|+|++++|+.++++++.+++++++++++++|+++. +++.+..+++.|+|+++++..+..++.+..   .....
T Consensus       330 ~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~  408 (476)
T 3i5t_A          330 SNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLR-DLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLK  408 (476)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTT-TSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-cCCCeEEEEecCceeEEEEecCccccccccchhHHHHH
Confidence            99999999999999999888999999999999999999764 678889999999999999976543333322   13567


Q ss_pred             HHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          429 LFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       429 ~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +.+.|+++||++.+.+   +++||+||+++|+++|++++++|++++++
T Consensus       409 ~~~~l~~~Gv~v~~~g---~~iRi~p~l~~t~e~i~~~l~~l~~~l~~  453 (476)
T 3i5t_A          409 IDERCFELGLIVRPLG---DLCVISPPLIISRAQIDEMVAIMRQAITE  453 (476)
T ss_dssp             HHHHHHHTTEECEEET---TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCEEEecC---CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            8899999999999863   89999999999999999999999998864

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=100.00  E-value=2.1e-67  Score=544.73  Aligned_cols=415  Identities=26%  Similarity=0.391  Sum_probs=351.3

Q ss_pred             CHHHHHHHHhhhcCCCccc----cccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc-
Q 011777           56 SADQVFQKRKQFLGPSIFH----YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH-  130 (477)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~-  130 (477)
                      ..+++.++.+++++.....    ....|+++++|+|+|+||.|||+||||.+|+++++|||+||+|++|+.+|++++.+ 
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~   90 (472)
T 3hmu_A           11 PTAELQALDAAHHLHPFSANNALGEEGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYY   90 (472)
T ss_dssp             CHHHHHHHHHHHEECTTEEHHHHHHHCCEEEEEEEBTEEEETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCC
T ss_pred             CHHHHHHHHHhhccCCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcccc
Confidence            3567888888887654322    11368999999999999999999999999999999999999999999999998652 


Q ss_pred             -cccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCccccccccc
Q 011777          131 -ATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTA  203 (477)
Q Consensus       131 -~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~  203 (477)
                       ....+.++...+|+++|++++|.+.++|+|+|||+|||+.|+|+++.+      +++++||+++++|||++.+++++++
T Consensus        91 ~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~  170 (472)
T 3hmu_A           91 NTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGG  170 (472)
T ss_dssp             CSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSC
T ss_pred             ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccC
Confidence             233567889999999999999887889999999999999999999987      4788999999999999999998887


Q ss_pred             CCCCCCCC-CCCCeeeecCCCCcC-CCCCCCHH----HHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHH
Q 011777          204 LNTWKYPI-PQGEIHHVVNPDPYH-GSFGSDAA----RYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLV  277 (477)
Q Consensus       204 ~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l  277 (477)
                      .+.++..+ ...++.+++.|..++ +++ .+..    .++++|+++++...++++++||+||++|++|.++++++||++|
T Consensus       171 ~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l  249 (472)
T 3hmu_A          171 MAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEI  249 (472)
T ss_dssp             CHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHH
T ss_pred             ChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHH
Confidence            65432111 335777777776555 222 2322    2367788888644446899999999999999999999999999


Q ss_pred             HHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhc--ccccccCCCCc
Q 011777          278 YDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMA--QKIQFNTFGGN  354 (477)
Q Consensus       278 ~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~--~~~~~~t~~~~  354 (477)
                      +++|++||++||+||||+||||+| ++|+++++++.||++||||++++| +|+|++++++++++.+.  ...+++||++|
T Consensus       250 ~~l~~~~gillI~DEv~~gfgr~G-~~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~n  328 (472)
T 3hmu_A          250 QRICDKYDILLIADEVICGFGRTG-NWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGH  328 (472)
T ss_dssp             HHHHHHTTCEEEEECTTTTTTTTS-SSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTC
T ss_pred             HHHHHHcCCEEEEEccccCCcccC-ccchhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhcccCCccccCCCCCC
Confidence            999999999999999999999999 788889999999999999999987 89999999999999883  23678899999


Q ss_pred             HHHHHHHHHHHHhhchhhHHHHHH-HHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCcc----HHHHHHH
Q 011777          355 PVCSAGGLAVLRVIDKERRQAHCA-DVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA----KAETAVL  429 (477)
Q Consensus       355 ~~~~aaa~a~l~~l~~~~~~~~~~-~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~----~~~~~~~  429 (477)
                      |++|+|++++|+.++++++.++++ +++++++++|+++. +++.+..+++.|+|+++++..+..++.+.    ......+
T Consensus       329 p~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~  407 (472)
T 3hmu_A          329 PVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALT-DHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYIC  407 (472)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGG-GSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-cCCCeEEEEecCceEEEEEecCccccccccchhHHHHHHH
Confidence            999999999999998889999999 99999999997764 57888999999999999997543333221    2345678


Q ss_pred             HHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          430 FEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       430 ~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .+.|+++||++.+++   +++||+||+++|++||++++++|++++++
T Consensus       408 ~~~l~~~Gv~v~~~g---~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  451 (472)
T 3hmu_A          408 RERCFANNLIMRHVG---DRMIISPPLVITPAEIDEMFVRIRKSLDE  451 (472)
T ss_dssp             HHHHHHTTBCCEEET---TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCcEEEecC---CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            899999999999874   89999999999999999999999998864

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=100.00  E-value=1.1e-64  Score=522.70  Aligned_cols=419  Identities=31%  Similarity=0.526  Sum_probs=360.5

Q ss_pred             CHHHHHHHHhhhcCCCcccc-ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccc
Q 011777           56 SADQVFQKRKQFLGPSIFHY-YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI  134 (477)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~  134 (477)
                      .++++.++..+++++++..+ ...|+++++|+|+||||.||++||||.+|++++++||+||+|++|+.++++++.+....
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~   87 (452)
T 3n5m_A            8 QTDELLAKDEQYVWHGMRPFSPNSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMS   87 (452)
T ss_dssp             HHHHHHHHHHHHBCCTTSCSCGGGCCEEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCCCCTT
T ss_pred             cHHHHHHHhhhhccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCCcccc
Confidence            35678888889887643222 24689999999999999999999999999999999999999999999999987664445


Q ss_pred             cCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc---c---CCceEEEEccCccCCcccccccccCCCCC
Q 011777          135 YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS---T---GNLGMIALRNAYHGGSSGTIGLTALNTWK  208 (477)
Q Consensus       135 ~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~---~---~~~~ii~~~~~yhG~~~~~~~~~~~~~~~  208 (477)
                      +.++...+++++|+++++.+.+ |+|++||+||++.|+++++.+   +   ++++||+++++|||++..++++++...++
T Consensus        88 ~~~~~~~~la~~l~~~~~~~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~  166 (452)
T 3n5m_A           88 QSHEPAIKLAEKLNEWLGGEYV-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRR  166 (452)
T ss_dssp             SEEHHHHHHHHHHHHHHTSCEE-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGT
T ss_pred             cCCHHHHHHHHHHHHhCCCCce-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhc
Confidence            6788899999999999987766 999999999999999999876   5   78899999999999999998888766544


Q ss_pred             CCCC--CCCeeeecCCCCcCCCCCCCH----HHHHHHHHHHHhccCCCCeeEEEeccc-CCCCCeeeCCchhHHHHHHHH
Q 011777          209 YPIP--QGEIHHVVNPDPYHGSFGSDA----ARYAQDLQDHIDFGTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIV  281 (477)
Q Consensus       209 ~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~le~~i~~~~~~~~a~vi~epi-~~~~G~~~~~~~~l~~l~~l~  281 (477)
                      ....  ..++.+++.|+.++++++++.    ..++++|+++++..+++++++||+||+ +| +|.++|+++||++|+++|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~  245 (452)
T 3n5m_A          167 YQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETC  245 (452)
T ss_dssp             TTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHH
T ss_pred             cccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHH
Confidence            3322  257788888888888887532    224688888886333467999999999 89 999999999999999999


Q ss_pred             HHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcc------cccccCCCCc
Q 011777          282 RKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQ------KIQFNTFGGN  354 (477)
Q Consensus       282 ~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~------~~~~~t~~~~  354 (477)
                      ++||++||+||||+||||+| .+++++++++.||++||||++++| +|+|++++++++++.+..      ..+++||++|
T Consensus       246 ~~~~~llI~DEv~~g~g~~g-~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~  324 (452)
T 3n5m_A          246 QKHGALLISDEVICGFGRTG-KAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGN  324 (452)
T ss_dssp             HHHTCEEEEECTTTTTTTTS-SSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTC
T ss_pred             HHcCCEEEEecchhCCCccc-ccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCC
Confidence            99999999999999999999 688889999999999999999999 999999999999998843      2477899999


Q ss_pred             HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCcc-HHHHHHHHHHH
Q 011777          355 PVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA-KAETAVLFEKL  433 (477)
Q Consensus       355 ~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~-~~~~~~~~~~l  433 (477)
                      |++++|++++|+.++++++.+++++++++++++|+++..+++.+..+++.|+|+++++..+..+..+. ......+.+.|
T Consensus       325 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l  404 (452)
T 3n5m_A          325 PAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNAC  404 (452)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHH
Confidence            99999999999998888899999999999999999998888888999999999999997544333332 33456788999


Q ss_pred             HHcCceeeccCC----CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          434 RELGVLVGKGGL----HGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       434 ~~~Gv~v~~~~~----~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      +++||++.+++.    .++++||+||+.+|+++|++++++|+++++++
T Consensus       405 ~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  452 (452)
T 3n5m_A          405 KEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMERI  452 (452)
T ss_dssp             HHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhC
Confidence            999999998753    25899999999999999999999999998764

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=100.00  E-value=1.3e-64  Score=523.08  Aligned_cols=416  Identities=26%  Similarity=0.416  Sum_probs=353.8

Q ss_pred             HHHHHHhhhcCCCccc------cccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc--
Q 011777           59 QVFQKRKQFLGPSIFH------YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH--  130 (477)
Q Consensus        59 ~~~~~~~~~~~~~~~~------~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~--  130 (477)
                      ++.++.+++++.....      ..+.|+++++|+|+||||.||++||||.+|++++++||+||+|++|+.+|++++.+  
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~   87 (460)
T 3gju_A            8 ELNAWDRDHFFHPSTHMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYH   87 (460)
T ss_dssp             CHHHHHHHHCCCTTSCHHHHHHTCSCCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHhhhcccccCccccccccccCCCceEEEEeeccEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccc
Confidence            4666677777654322      11245999999999999999999999999999999999999999999999988653  


Q ss_pred             cccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccC
Q 011777          131 ATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTAL  204 (477)
Q Consensus       131 ~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~  204 (477)
                      ....+.++...+|+++|+++++.+.++|+|+|||+||++.|+++++.+      +++++||+++++|||++.+++++++.
T Consensus        88 ~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~  167 (460)
T 3gju_A           88 AYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGL  167 (460)
T ss_dssp             CCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCC
T ss_pred             cccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCC
Confidence            233467788999999999998878889999999999999999999876      57899999999999999999998876


Q ss_pred             CCCCCCCCC--CCeeeecCCCCcCCCC-CCCHH----HHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHH
Q 011777          205 NTWKYPIPQ--GEIHHVVNPDPYHGSF-GSDAA----RYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLV  277 (477)
Q Consensus       205 ~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~----~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l  277 (477)
                      ..++..+..  .++.+++.|..++++. +.+..    .++++|+++++..+++++++||+||++|++|.++++++||++|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l  247 (460)
T 3gju_A          168 DLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKI  247 (460)
T ss_dssp             GGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHH
T ss_pred             cccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHH
Confidence            655443332  5778888777776543 22322    2367888888744446899999999999999999999999999


Q ss_pred             HHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhc-------cccccc
Q 011777          278 YDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMA-------QKIQFN  349 (477)
Q Consensus       278 ~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~-------~~~~~~  349 (477)
                      +++|++||++||+||||+||||+| ++++++++++.||++||||++++| +|+|++++++++++.+.       ...+++
T Consensus       248 ~~l~~~~~~llI~DEv~~g~gr~g-~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~  326 (460)
T 3gju_A          248 QAVLKKYDVLLVADEVVTGFGRLG-TMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGW  326 (460)
T ss_dssp             HHHHHHTTCEEEEECTTTTTTTTS-SSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCC
T ss_pred             HHHHHHcCCEEEEeccccCCCccc-ccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCC
Confidence            999999999999999999999999 788889999999999999999998 79999999999999884       346789


Q ss_pred             CCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCc---cHHHH
Q 011777          350 TFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTP---AKAET  426 (477)
Q Consensus       350 t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~---~~~~~  426 (477)
                      ||++||++++|++++|+.++++++.+++++++++++++|.+...+++.+..+++.|+|+++++..+...+.+   .....
T Consensus       327 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  406 (460)
T 3gju_A          327 TYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKIG  406 (460)
T ss_dssp             TTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEccCccccccccchHHHH
Confidence            999999999999999999888889999999999999999888888888999999999999999754332222   22345


Q ss_pred             HHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          427 AVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       427 ~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ..+.+.|+++||++.+++ .++++||+||+++|+++|++++++|++++++
T Consensus       407 ~~~~~~l~~~Gv~v~~~~-~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  455 (460)
T 3gju_A          407 PQVATALAASGVIGRAMP-QGDILGFAPPLCLTREQADIVVSKTADAVKS  455 (460)
T ss_dssp             HHHHHHHHHTTEECEECS-SSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCeEEecCC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            678899999999999876 4589999999999999999999999998864

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=100.00  E-value=2e-66  Score=565.67  Aligned_cols=396  Identities=22%  Similarity=0.267  Sum_probs=327.4

Q ss_pred             CceeEEeeecc--EEEeCCCC----EEEeecCCcccccCCCC-CHHHHHHHHHHHhhcccccc-ccCChHHHHHHHHHHh
Q 011777           78 KPLNIVEGKMQ--YLFDENGR----RYLDAFAGIVTVSCGHC-HPDVLNAIFEQSKLLQHATT-IYLHHAIADFAEALAS  149 (477)
Q Consensus        78 ~p~~~~~g~G~--~~~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Av~~~l~~~~~~~~-~~~~~~~~~l~~~La~  149 (477)
                      .|++|++|+|.  ||||.|||    +|||+++|+|++++||+ ||+|++|+.+|++++.|... .+.++...+|+++|++
T Consensus       356 ~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~~~~~~~~~~~~Lae~L~~  435 (831)
T 4a0g_A          356 TVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLD  435 (831)
T ss_dssp             GCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCCCTTEECHHHHHHHHHHHH
T ss_pred             CCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhcccccccccCCHHHHHHHHHHHH
Confidence            47899999995  99999999    99999999999999999 99999999999999877643 3568889999999999


Q ss_pred             hCCCC-CCEEEEeCChHHHHHHHHHHH-Hhcc--------------CCceEEEEccCccCCcccccccccCCCCCC----
Q 011777          150 KMPGN-LKVVYFVNSGTEANELAMLMA-RLST--------------GNLGMIALRNAYHGGSSGTIGLTALNTWKY----  209 (477)
Q Consensus       150 ~~~~~-~~~v~~~~sGseA~~~Al~~a-r~~~--------------~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~----  209 (477)
                      ++|.+ +++|+|+||||||||.|||+| |.|+              +|.+||+++++|||.+.+++++++...++.    
T Consensus       436 ~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~  515 (831)
T 4a0g_A          436 GVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQ  515 (831)
T ss_dssp             TTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTC
T ss_pred             hCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCcccccccccc
Confidence            99865 789999999999999999999 5553              467899999999999999999988654432    


Q ss_pred             CC--------CC------CCeeeecCCCCcCCCC------CCC-------------HHHHHHHHHHHHhc----cCCCCe
Q 011777          210 PI--------PQ------GEIHHVVNPDPYHGSF------GSD-------------AARYAQDLQDHIDF----GTSGKV  252 (477)
Q Consensus       210 ~~--------~~------~~~~~~~~~~~~~~~~------~~~-------------~~~~~~~le~~i~~----~~~~~~  252 (477)
                      +.        +.      .++.+++.|+.++...      ++.             ...|.++|+++|+.    .+++++
T Consensus       516 ~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~i  595 (831)
T 4a0g_A          516 PWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHV  595 (831)
T ss_dssp             TTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEE
T ss_pred             ccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcE
Confidence            10        00      2445566776665431      110             12356778887763    235789


Q ss_pred             eEEEeccc-CCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceE
Q 011777          253 AGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLG  330 (477)
Q Consensus       253 a~vi~epi-~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig  330 (477)
                      ++||+||+ ||++|+++++++||++|+++|++||++||+||||+||||+| ++|+++++|+.||++||||+++|| +|+|
T Consensus       596 aavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG-~~fa~e~~gv~PDiitlsK~L~gG~~Plg  674 (831)
T 4a0g_A          596 GALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLG-VETTTELLGCKPDIACFAKLLTGGMVPLA  674 (831)
T ss_dssp             EEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTS-BSSTHHHHSSCCSEEEECGGGGTTSSCCE
T ss_pred             EEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCC-CchhhHhcCCCCcEEEEecccccCccCcE
Confidence            99999997 99999999999999999999999999999999999999999 789999999999999999999999 7999


Q ss_pred             EEEeCHHHHHhhccc------ccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH----HHHHHHHhCCCcee
Q 011777          331 AVVTTPEIANVMAQK------IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLG----RLRTLQERHDIIGD  400 (477)
Q Consensus       331 ~v~~~~~~~~~~~~~------~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~----~L~~l~~~~~~~~~  400 (477)
                      ++++++++++.+...      .|++||++||++|++++++|++++++++.+++.++++++++    .+.+...+++.+.+
T Consensus       675 av~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~  754 (831)
T 4a0g_A          675 VTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQR  754 (831)
T ss_dssp             EEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEE
T ss_pred             EEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcee
Confidence            999999999988653      38899999999999999999999888888888776666543    45555567899999


Q ss_pred             eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          401 VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       401 v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      +++.|+|+++++..+...+.+.......+.+.|+++||++.+.   +++|||+||+.+|++||++++++|+++++++
T Consensus       755 vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~---g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l  828 (831)
T 4a0g_A          755 VVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRPL---GNVIYLMCGPCTSPEICRRLLTKLYKRLGEF  828 (831)
T ss_dssp             EEEETTEEEEEEC---------CHHHHHHHHHHHHTTEECCCB---TTEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred             EeecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEec---CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999997653222223345677899999999999875   5899999999999999999999999998764

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=100.00  E-value=2e-64  Score=521.70  Aligned_cols=414  Identities=25%  Similarity=0.378  Sum_probs=337.6

Q ss_pred             HHHHHHHhhhcCCCccc---c-ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--cc
Q 011777           58 DQVFQKRKQFLGPSIFH---Y-YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HA  131 (477)
Q Consensus        58 ~~~~~~~~~~~~~~~~~---~-~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~  131 (477)
                      +++.++.+++++.....   + ...|+++++|+|+||||.||++||||.+|+++++|||+||+|++|+.++++++.  +.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~   87 (459)
T 4a6r_A            8 SQWRELDAAHHLHPFTDTASLNQAGARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNT   87 (459)
T ss_dssp             --------------------------CCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCT
T ss_pred             HHHHHHhhhhccCCccccccccccCCeeEEEeecCEEEECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhcccccc
Confidence            34556666666543221   1 235899999999999999999999999999999999999999999999999865  22


Q ss_pred             ccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccCC
Q 011777          132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTALN  205 (477)
Q Consensus       132 ~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~  205 (477)
                      ...+.++...+|+++|+++++.+.++|+|+|||+||++.|+++++.+      +++++||+++++|||++.+++++++.+
T Consensus        88 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~  167 (459)
T 4a6r_A           88 FFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMK  167 (459)
T ss_dssp             TSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCT
T ss_pred             ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCCh
Confidence            33567888999999999999888899999999999999999999886      478899999999999999999988776


Q ss_pred             CCCCCCC--CCCeeeecCCCCcC-CCCCCCHHH----HHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHH
Q 011777          206 TWKYPIP--QGEIHHVVNPDPYH-GSFGSDAAR----YAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVY  278 (477)
Q Consensus       206 ~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~----~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~  278 (477)
                      .++..+.  ..++.+++.|..++ +++ .|...    ++++|+++++...++++++||+||+++++|.++++++||++|+
T Consensus       168 ~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~  246 (459)
T 4a6r_A          168 YMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIE  246 (459)
T ss_dssp             TTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHH
T ss_pred             hhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHH
Confidence            6543332  24777777776555 222 23222    3678888887444467999999999999999999999999999


Q ss_pred             HHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhc---ccccccCCCCc
Q 011777          279 DIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMA---QKIQFNTFGGN  354 (477)
Q Consensus       279 ~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~---~~~~~~t~~~~  354 (477)
                      ++|++||++||+||||+||||+| .+++++++++.||++||||++++| +|+|++++++++++.+.   ...+++||++|
T Consensus       247 ~l~~~~~~llI~DEv~~g~gr~G-~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~  325 (459)
T 4a6r_A          247 RICRKYDVLLVADEVICGFGRTG-EWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGH  325 (459)
T ss_dssp             HHHHHTTCEEEEECTTTTTTTTS-SSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSC
T ss_pred             HHHHHcCCEEEEeccccCCCccc-ccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCC
Confidence            99999999999999999999999 688889999999999999999987 89999999999999887   45677899999


Q ss_pred             HHHHHHHHHHHHhhchhhHHHHHH-HHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCC---ccHHHHHHHH
Q 011777          355 PVCSAGGLAVLRVIDKERRQAHCA-DVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKT---PAKAETAVLF  430 (477)
Q Consensus       355 ~~~~aaa~a~l~~l~~~~~~~~~~-~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~---~~~~~~~~~~  430 (477)
                      |++++|++++|+.++++++.++++ +++++++++|.+...+++.+..+++.|+|+++++..+..++.   +.......+.
T Consensus       326 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (459)
T 4a6r_A          326 PVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCR  405 (459)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCccccccccchHHHHHHHH
Confidence            999999999999988889999999 999999999944445678889999999999999975433322   2334467788


Q ss_pred             HHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          431 EKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       431 ~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +.|+++||++.+++   +++||+||+++|++++++++++|++++++
T Consensus       406 ~~l~~~Gv~v~~~g---~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  448 (459)
T 4a6r_A          406 DIFFRNNLIMRACG---DHIVSAPPLVMTRAEVDEMLAVAERCLEE  448 (459)
T ss_dssp             HHHHHTTEECEEET---TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCeEEecCC---CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999874   89999999999999999999999998864

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=100.00  E-value=2.6e-64  Score=519.71  Aligned_cols=403  Identities=24%  Similarity=0.329  Sum_probs=342.5

Q ss_pred             CCCHHHHHHHHhhhcCCCcccc---ccCceeEEeeeccEEEeC-CCC--EEEeecCCcccccCCCCCHHHHHHHHHHHhh
Q 011777           54 GPSADQVFQKRKQFLGPSIFHY---YQKPLNIVEGKMQYLFDE-NGR--RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKL  127 (477)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~---~~~p~~~~~g~G~~~~d~-dG~--~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~  127 (477)
                      +.+.++++++.++++++.+...   ...|+++++|+|+|+||. |||  +||||.+|++++++||+||+|++|+.+|+++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~  106 (457)
T 3tfu_A           27 GLTPEQIIAVDGAHLWHPYSSIGREAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRV  106 (457)
T ss_dssp             CCCHHHHHHHHHHHBCCTTCCSSCCSSCCEEEEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhhcCcccccccccCCCCceEEeeecCEEEEccCCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHh
Confidence            3556789999999987654322   335899999999999999 999  9999999999999999999999999999998


Q ss_pred             ccccc-cccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccc
Q 011777          128 LQHAT-TIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIG  200 (477)
Q Consensus       128 ~~~~~-~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~  200 (477)
                      +.+.. ..+.++...+|+++|+++++.+.++|+|+|||+|||+.|+|+++.+      +++++||+++++|||++.++++
T Consensus       107 ~~~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~  186 (457)
T 3tfu_A          107 MNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMS  186 (457)
T ss_dssp             CSCCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHT
T ss_pred             ccCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhc
Confidence            76654 4567888999999999999877889999999999999999999987      7888999999999999999988


Q ss_pred             ccc-CCCCCCCCC--CCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecc-cCCCCCeeeCCchhHHH
Q 011777          201 LTA-LNTWKYPIP--QGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAET-IQGVGGAVELAPGYLKL  276 (477)
Q Consensus       201 ~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~  276 (477)
                      +++ ...++..+.  ..++..++.|..   .+.   ...+++|+++++.. ++++++||+|| +||++|+++++++||++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~---~~d~~~le~~l~~~-~~~~aavi~ep~~~~~~G~~~~~~~~l~~  259 (457)
T 3tfu_A          187 ICDPHGGMHSLWTDVLAAQVFAPQVPR---DYD---PAYSAAFEAQLAQH-AGELAAVVVEPVVQGAGGMRFHDPRYLHD  259 (457)
T ss_dssp             TSCCC----------CCCCEEECCCCS---SCC---HHHHHHHHHHHHHH-GGGEEEEEECSSEECTTTCEECCTHHHHH
T ss_pred             ccCCcccccccccCCCCCceEecCCCc---ccC---HHHHHHHHHHHHhC-CCCEEEEEEeCCCcCCCCcccCCHHHHHH
Confidence            854 233332222  135555554432   111   22367888888632 35799999999 99999999999999999


Q ss_pred             HHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhc---cc--ccccC
Q 011777          277 VYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMA---QK--IQFNT  350 (477)
Q Consensus       277 l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~---~~--~~~~t  350 (477)
                      |+++|++||++||+||||+||||+| .+++++++++.||++||||+++|| +|+|++++++++++.+.   ..  .+++|
T Consensus       260 l~~l~~~~gillI~DEv~~g~gr~G-~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t  338 (457)
T 3tfu_A          260 LRDICRRYEVLLIFDEIATGFGRTG-ALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPT  338 (457)
T ss_dssp             HHHHHHHHTCEEEEECTTTTTTTTS-SSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCT
T ss_pred             HHHHHHHcCCEEEEEcCccCCcccc-chhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEecC
Confidence            9999999999999999999999999 788889999999999999999998 69999999999999884   22  67899


Q ss_pred             CCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHH
Q 011777          351 FGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLF  430 (477)
Q Consensus       351 ~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~  430 (477)
                      |++||++|++++++|+.++++++.+++++++++++++|+++. +++.+..+++.|+|+++++..+.        ...++.
T Consensus       339 ~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~vr~~G~~~~i~l~~~~--------~~~~~~  409 (457)
T 3tfu_A          339 FMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTAR-ALPAVTDVRVCGAIGVIECDRPV--------DLAVAT  409 (457)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGG-GSTTEEEEEECSSCEEEEESSCC--------CHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-cCCCeeeeecCCeEEEEEECCcc--------cHHHHH
Confidence            999999999999999998888899999999999999999875 67778899999999999985321        145788


Q ss_pred             HHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          431 EKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       431 ~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +.|+++||++.+.   ++++||+||+++|++||++++++|++++++
T Consensus       410 ~~l~~~Gv~v~~~---~~~lRi~p~~~~t~eei~~~l~~L~~~l~~  452 (457)
T 3tfu_A          410 PAALDRGVWLRPF---RNLVYAMPPYICTPAEITQITSAMVEVARL  452 (457)
T ss_dssp             HHHHHTTEECCCB---TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCeEEEec---CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999875   589999999999999999999999999875

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=100.00  E-value=5.8e-64  Score=516.61  Aligned_cols=412  Identities=27%  Similarity=0.410  Sum_probs=333.8

Q ss_pred             HHHHHHHhhhcCCCcc---ccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccc-cc
Q 011777           58 DQVFQKRKQFLGPSIF---HYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA-TT  133 (477)
Q Consensus        58 ~~~~~~~~~~~~~~~~---~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~-~~  133 (477)
                      +++.++.+++++....   .+...|+++++|+|+||||.||++||||.++++++++||+||+|++|+.++++++.+. ..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~   82 (448)
T 3dod_A            3 HDLIEKSKKHLWLPFTQMKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLL   82 (448)
T ss_dssp             CHHHHHHHHHBCCTTCCHHHHHHSCCEEEEEEBTEEEETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCS
T ss_pred             hHHHHhhhhcccccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcccc
Confidence            3577778888874432   1234689999999999999999999999999999999999999999999999987553 33


Q ss_pred             ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc---cC---CceEEEEccCccCCcccccccccCCCC
Q 011777          134 IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS---TG---NLGMIALRNAYHGGSSGTIGLTALNTW  207 (477)
Q Consensus       134 ~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~---~~---~~~ii~~~~~yhG~~~~~~~~~~~~~~  207 (477)
                      .+.++...+++++|+++++.+.++|+|+|||+||++.|+++++.+   +|   +++||+++++|||++..++++++...+
T Consensus        83 ~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~  162 (448)
T 3dod_A           83 GMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELF  162 (448)
T ss_dssp             SSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-------------------
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccc
Confidence            466788999999999999877889999999999999999999987   77   899999999999999999988876554


Q ss_pred             CCCCCC--CCeeeecCCCCcCCCCCCCHHH----HHHHHHHHHhccCCCCeeEEEecccC-CCCCeeeCCchhHHHHHHH
Q 011777          208 KYPIPQ--GEIHHVVNPDPYHGSFGSDAAR----YAQDLQDHIDFGTSGKVAGFIAETIQ-GVGGAVELAPGYLKLVYDI  280 (477)
Q Consensus       208 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~le~~i~~~~~~~~a~vi~epi~-~~~G~~~~~~~~l~~l~~l  280 (477)
                      +..+.+  .++..++.++.++++ +.+...    .+++|+++++. +++++++||+||++ +++|.++++++||++|+++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~le~~l~~-~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l  240 (448)
T 3dod_A          163 HHVYGPLMFESYKAPIPYVYRSE-SGDPDECRDQCLRELAQLLEE-HHEEIAALSIESMVQGASGMIVMPEGYLAGVREL  240 (448)
T ss_dssp             ----------CEEECCCCCTTSS-SCCHHHHHHHHHHHHHHHHHH-HGGGEEEEEEESSEESTTTCEECCTTHHHHHHHH
T ss_pred             cccccCCCCCceEeCCCccccCC-ccchhhhhHHHHHHHHHHHHh-CCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHH
Confidence            433322  467788888888877 443322    36778888862 23578999999998 9999999999999999999


Q ss_pred             HHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcc-------cccccCCC
Q 011777          281 VRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQ-------KIQFNTFG  352 (477)
Q Consensus       281 ~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~-------~~~~~t~~  352 (477)
                      |++||++||+||||+||||+| .+++++++++.||++||||++++| +|+|++++++++++.+..       ..+++||+
T Consensus       241 ~~~~~~~lI~DEv~~g~g~~g-~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~  319 (448)
T 3dod_A          241 CTTYDVLMIVDEVATGFGRTG-KMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYT  319 (448)
T ss_dssp             HHHTTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTT
T ss_pred             HHHhCCEEEEeccccCCCccc-chhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCC
Confidence            999999999999999999999 678889999999999999999999 599999999999999876       56789999


Q ss_pred             CcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHH---HHHHH
Q 011777          353 GNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKA---ETAVL  429 (477)
Q Consensus       353 ~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~---~~~~~  429 (477)
                      +||++++|++++|+.++++++.+++++++++++++|.+ ..+++.+..+++.|+|+++++..+...+.+...   ....+
T Consensus       320 ~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (448)
T 3dod_A          320 GNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKV  398 (448)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHH
Confidence            99999999999999988888999999999999999999 667788889999999999999754333222211   13578


Q ss_pred             HHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          430 FEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       430 ~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .+.|+++||++.++   ++++||+|++.+|+++|++++++|++++++
T Consensus       399 ~~~l~~~Gv~~~~~---~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  442 (448)
T 3dod_A          399 SLKMRELGMLTRPL---GDVIAFLPPLASTAEELSEMVAIMKQAIHE  442 (448)
T ss_dssp             HHHHHHTTEECCEE---TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCcEEecc---CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            89999999999986   489999999999999999999999998864

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=100.00  E-value=1.5e-60  Score=489.22  Aligned_cols=408  Identities=25%  Similarity=0.361  Sum_probs=335.3

Q ss_pred             CCCHHHHHHHHhhhcCCCcc---ccc-----cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHH
Q 011777           54 GPSADQVFQKRKQFLGPSIF---HYY-----QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQS  125 (477)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~---~~~-----~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l  125 (477)
                      .|++++++++.+++++.+..   ..+     ..|+++++|+|+|+||.||++||||.+++++++|||+||+|++|+.+++
T Consensus         5 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~   84 (434)
T 3l44_A            5 FTKSEALHKEALEHIVGGVNSPSRSFKAVGGGAPIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAA   84 (434)
T ss_dssp             CHHHHHHHHHHHHHBGGGCSSGGGSSGGGTCSCCCCEEEEEBTEEEETTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHhhCCCCcCccccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHH
Confidence            46789999999999875431   111     4689999999999999999999999999999999999999999999999


Q ss_pred             hhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCC
Q 011777          126 KLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALN  205 (477)
Q Consensus       126 ~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~  205 (477)
                      ++..  ...|+++...+|+++|++.++ +.++|+|+|||+||++.|+++++.++++++||+++++|||++..++..++..
T Consensus        85 ~~~~--~~~~~~~~~~~l~~~la~~~~-~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~  161 (434)
T 3l44_A           85 ENGV--LYGTPTALEVKFAKMLKEAMP-ALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSG  161 (434)
T ss_dssp             HHCS--CCSSCCHHHHHHHHHHHHHCT-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC----
T ss_pred             HhCc--CCCCCCHHHHHHHHHHHHhCC-CCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCc
Confidence            8743  234678889999999999998 5789999999999999999999988899999999999999999888877643


Q ss_pred             CCCCCCCC-CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHh
Q 011777          206 TWKYPIPQ-GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKA  284 (477)
Q Consensus       206 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~  284 (477)
                      ......+. .++.....+.....++++     +++|+++++.. ++++++|++||+++++|.++++++|+++|+++|++|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~  235 (434)
T 3l44_A          162 PSTLGTPDSAGVPQSIAQEVITVPFNN-----VETLKEALDKW-GHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEA  235 (434)
T ss_dssp             ---CCCBSSTTCCHHHHTTEEEECTTC-----HHHHHHHHHHH-GGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTT
T ss_pred             ccccCCCCcCCCCCcCCCceEecCccc-----HHHHHHHHHhC-CCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHc
Confidence            32221111 111100011111222322     57888888632 257899999999999999999999999999999999


Q ss_pred             CcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcc---cccccCCCCcHHHHHHH
Q 011777          285 GGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQ---KIQFNTFGGNPVCSAGG  361 (477)
Q Consensus       285 gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~---~~~~~t~~~~~~~~aaa  361 (477)
                      |++||+||||+|| |+| .+++++++++.||++||||++++|+|+|++++++++++.+..   ..+++||++|+++++++
T Consensus       236 ~illI~DEv~~g~-~~g-~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa  313 (434)
T 3l44_A          236 GALVIYDEVITAF-RFM-YGGAQDLLGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASG  313 (434)
T ss_dssp             TCEEEEECTTTTT-TSS-SSCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHH
T ss_pred             CCEEEEeccccce-ecc-ccHHHHHcCCCCCeeehhhhhcCCcCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHH
Confidence            9999999999999 998 677788999999999999999999999999999999998865   34778999999999999


Q ss_pred             HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCC-----CCccHHHHHHHHHHHHHc
Q 011777          362 LAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKE-----KTPAKAETAVLFEKLREL  436 (477)
Q Consensus       362 ~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~~  436 (477)
                      +++|+.++++++.+++++++++++++|+++..+++.+..+++.|+|+++++......     ..++......+.+.|+++
T Consensus       314 ~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  393 (434)
T 3l44_A          314 IACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQE  393 (434)
T ss_dssp             HHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHC
Confidence            999999888889999999999999999999888888888999999999998532110     013344557788999999


Q ss_pred             CceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          437 GVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       437 Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ||++.+++  .+.+|+  ++.+|++|+++++++|++++++
T Consensus       394 Gv~v~~~~--~~~~rl--~~~~t~e~i~~~l~~l~~~l~~  429 (434)
T 3l44_A          394 GVNLAPSK--YEAWFL--TTEHTKEDIEYTIEAVGRAFAA  429 (434)
T ss_dssp             TEECCSST--TCCEEC--CTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CeEEeecC--CCcEEE--ecccCHHHHHHHHHHHHHHHHH
Confidence            99999875  356777  6899999999999999998864

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=100.00  E-value=4.1e-60  Score=486.60  Aligned_cols=413  Identities=31%  Similarity=0.462  Sum_probs=347.5

Q ss_pred             HHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccc-ccc
Q 011777           57 ADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT-TIY  135 (477)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~-~~~  135 (477)
                      .++++++.+++++.+...  ..|+++++|+|+|+||.||++||||.++.+++++||+||+|++++.+++++..+.. ..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~   83 (439)
T 3dxv_A            6 KALYDRDGAAIGNLQKLR--FFPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSA   83 (439)
T ss_dssp             CCHHHHHHHHBCGGGCCC--SSCCEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCSCSSSS
T ss_pred             HHHHHHHHHHhccCccCC--CCCceEEEeeeCEEEeCCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccccc
Confidence            357888888888765433  36899999999999999999999999999999999999999999999998865443 456


Q ss_pred             CChHHHHHHHHHHhhCCCCC-CEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCC--CCCCCC
Q 011777          136 LHHAIADFAEALASKMPGNL-KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNT--WKYPIP  212 (477)
Q Consensus       136 ~~~~~~~l~~~La~~~~~~~-~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~--~~~~~~  212 (477)
                      .++...+++++|+++++.+. ++++|++||+||++.|+++++.++++++||+++++|||.+..++.+++...  ++..+.
T Consensus        84 ~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~  163 (439)
T 3dxv_A           84 SNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKAD  163 (439)
T ss_dssp             EEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------
T ss_pred             CCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccC
Confidence            77889999999999998767 799999999999999999998888999999999999999998888776543  332221


Q ss_pred             C--CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEE
Q 011777          213 Q--GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA  290 (477)
Q Consensus       213 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  290 (477)
                      +  .++..++.++.+..   .+....+++|+++++..+.+++++|++||+++++|.+.++++|+++|+++|++||++||+
T Consensus       164 ~~~~~~~~~~~~~~~~~---~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~  240 (439)
T 3dxv_A          164 GLILLPYPDPYRPYRND---PTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVC  240 (439)
T ss_dssp             CEEEECCCCSSSCBTTB---TTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCcEEcCCCccccc---ccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence            1  12233333322211   111124688888885334568999999999999999999999999999999999999999


Q ss_pred             cCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch
Q 011777          291 DEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK  370 (477)
Q Consensus       291 DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~  370 (477)
                      ||+|+|||++| .++.++++++.||++||||++++|+|+|++++++++++.+....+.+|| +|++++++++++|+.+++
T Consensus       241 DE~~~g~g~~g-~~~~~~~~~~~~di~s~sK~~~~G~riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~  318 (439)
T 3dxv_A          241 DEVKVGLARSG-RLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLAVLETIDR  318 (439)
T ss_dssp             ECTTTCTTTTS-SSSGGGGTTCCCSEEEECGGGGTTSCCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHH
T ss_pred             eccccCCCcCc-hhhHHHhcCCCCCEEEEcchhcCCcceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHh
Confidence            99999999999 6788899999999999999999999999999999999988877778999 999999999999998888


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEE
Q 011777          371 ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVF  450 (477)
Q Consensus       371 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~i  450 (477)
                      +++.+++++++++++++|.++..+++.+..+++.|+|+++++..+...+.|.......+.+.|+++||++.+++..++++
T Consensus       319 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~i  398 (439)
T 3dxv_A          319 DDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVL  398 (439)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTTSCEE
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCCCCEE
Confidence            88999999999999999999988888888999999999999876544444556667789999999999999987667999


Q ss_pred             EEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          451 RIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       451 Ri~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ||+|++.+|++++++++++|++++++
T Consensus       399 Ri~~~~~~t~e~i~~~l~~l~~~l~~  424 (439)
T 3dxv_A          399 EFTPPLTITETDIHKALDLLDRAFSE  424 (439)
T ss_dssp             EECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999865

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=100.00  E-value=5.7e-60  Score=484.60  Aligned_cols=418  Identities=32%  Similarity=0.507  Sum_probs=349.4

Q ss_pred             CHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccccc
Q 011777           56 SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY  135 (477)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~  135 (477)
                      ++.+++++..+++++....+  .|+++.+|+|+++||.||++||||.++.+++++||+||+|++|+.+++++..+....|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~   82 (433)
T 1zod_A            5 DDATFWRNARHHLVRYGGTF--EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEM   82 (433)
T ss_dssp             TCHHHHHHHHHHCCCCSSCC--CSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTC
T ss_pred             hhHHHHHHHHHhhccccccc--CCceEEEeecCEEEeCCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCccccccc
Confidence            45788888888876543222  5889999999999999999999999999999999999999999999998765444456


Q ss_pred             CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCC-CC
Q 011777          136 LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP-QG  214 (477)
Q Consensus       136 ~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~-~~  214 (477)
                      .++...+++++|+++++.+.++|+|++||+||++.|+++++.++++++||+++++|||.+..+++.++...+....+ ..
T Consensus        83 ~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~  162 (433)
T 1zod_A           83 LSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAV  162 (433)
T ss_dssp             CCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCT
T ss_pred             CCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCC
Confidence            77888999999999998777899999999999999999988777888999999999999988887765432221111 24


Q ss_pred             CeeeecCCCCcCCCCCCC----HHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEE
Q 011777          215 EIHHVVNPDPYHGSFGSD----AARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA  290 (477)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~----~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  290 (477)
                      ++..++.|..++.+++++    ....+++|+++++....+++++|++||+++++|.++++++++++|+++|++||++||+
T Consensus       163 ~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~  242 (433)
T 1zod_A          163 GSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLIL  242 (433)
T ss_dssp             TEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEE
T ss_pred             CceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Confidence            777887777777666531    2234688888887433357899999999999998899999999999999999999999


Q ss_pred             cCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccc--cccCCCCcHHHHHHHHHHHHhh
Q 011777          291 DEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKI--QFNTFGGNPVCSAGGLAVLRVI  368 (477)
Q Consensus       291 DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a~l~~l  368 (477)
                      ||||+|||++| .+++++.+++.||++||||++++|+|+|++++++++++.+....  +++|+++|+++++++.++|+.+
T Consensus       243 DEv~~~~g~~g-~~~~~~~~~~~~di~s~sK~~~~G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~  321 (433)
T 1zod_A          243 DEAQTGVGRTG-TMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVV  321 (433)
T ss_dssp             ECTTTTTTTTS-SSSTHHHHTCCCSEEEECHHHHTTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHH
T ss_pred             eccccCCCcCc-hHhHHhhcCCCCCEEEecccccCCCCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence            99999999999 67777888999999999999999999999999999998886533  4489999999999999999988


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCC-
Q 011777          369 DKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHG-  447 (477)
Q Consensus       369 ~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~-  447 (477)
                      +++++.+++++++++++++|+++..+++.+..+++.|+|+++++..+...+.++......+.+.|+++||++.+++.++ 
T Consensus       322 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~  401 (433)
T 1zod_A          322 QRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGM  401 (433)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTS
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCCCC
Confidence            8788999999999999999999876777777889999999998864321111212235678888999999999986555 


Q ss_pred             -CEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          448 -NVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       448 -~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                       +++||+|++.+|++++++++++|++++++
T Consensus       402 ~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~  431 (433)
T 1zod_A          402 GGVFRIAPPLTVSEDEIDLGLSLLGQAIER  431 (433)
T ss_dssp             CCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence             89999999999999999999999998865

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=100.00  E-value=1.9e-60  Score=487.73  Aligned_cols=408  Identities=23%  Similarity=0.327  Sum_probs=337.6

Q ss_pred             CCCHHHHHHHHhhhcCCCcc---cc----ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHh
Q 011777           54 GPSADQVFQKRKQFLGPSIF---HY----YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSK  126 (477)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~---~~----~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~  126 (477)
                      .|+|++++++.+++++.+..   ..    ...|+++++|+|+++||.|||+||||.+++++++|||+||+|++|+.++++
T Consensus         4 ~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~   83 (429)
T 3k28_A            4 FDKSIAAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAE   83 (429)
T ss_dssp             CHHHHHHHHHHTTTSGGGSSSGGGGCGGGTCCCCCEEEEEBTEEEETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCChhhcccCCCCHHHHHHHHHHHh
Confidence            46789999999999975432   22    256899999999999999999999999999999999999999999999998


Q ss_pred             hccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCC
Q 011777          127 LLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNT  206 (477)
Q Consensus       127 ~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~  206 (477)
                      ++.+  ..++++...+|+++|+++++ +.++|+|+|||+||++.|+++++.++++++||+++++|||++..++..++...
T Consensus        84 ~~~~--~~~~~~~~~~l~~~la~~~~-~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~  160 (429)
T 3k28_A           84 RGTS--FGAPTEIENKLAKLVIERVP-SIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGV  160 (429)
T ss_dssp             HCSC--CSSCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC
T ss_pred             hCcC--cCCCCHHHHHHHHHHHHhCC-CCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcc
Confidence            8543  24678889999999999987 57899999999999999999999888999999999999999998887766433


Q ss_pred             CCCCCCC-CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhC
Q 011777          207 WKYPIPQ-GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAG  285 (477)
Q Consensus       207 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g  285 (477)
                      .....+. .++.....+.....++++     +++++++++.. ++++++|++||+++++|.+.++++||++|+++|++||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~  234 (429)
T 3k28_A          161 ATLGLPDSPGVPEGVAKNTITVAYND-----LESVKYAFEQF-GDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNG  234 (429)
T ss_dssp             -----CCCTTCCHHHHTTEEEEETTC-----HHHHHHHHHHH-GGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHT
T ss_pred             cccCCCCcCCCCCcccCceeecCCCC-----HHHHHHHHHhC-CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcC
Confidence            2222221 111100001111122322     57888888632 3578999999999999999999999999999999999


Q ss_pred             cEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhccc---ccccCCCCcHHHHHHHH
Q 011777          286 GVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGL  362 (477)
Q Consensus       286 illI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~---~~~~t~~~~~~~~aaa~  362 (477)
                      ++||+||+|+|| ++| .+++++++++.||++||||++++|+|+|++++++++++.+...   .+++||++|++++++++
T Consensus       235 ~~li~DEv~~g~-~~g-~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~  312 (429)
T 3k28_A          235 ALLIFDEVMTGF-RVA-YNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGY  312 (429)
T ss_dssp             CEEEEECTTTTT-TSS-TTHHHHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHH
T ss_pred             CEEEEecccccc-ccC-cchHHHHhCCCCceehhhhhhcCCCCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHH
Confidence            999999999999 998 6777888999999999999999999999999999999888642   47789999999999999


Q ss_pred             HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCC-----CCCccHHHHHHHHHHHHHcC
Q 011777          363 AVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRK-----EKTPAKAETAVLFEKLRELG  437 (477)
Q Consensus       363 a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~-----~~~~~~~~~~~~~~~l~~~G  437 (477)
                      ++|+.++ +++.+++++++++++++|+++..+++.+..+++.|+++++++..+..     .+.++......+.+.|+++|
T Consensus       313 aal~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  391 (429)
T 3k28_A          313 ETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQG  391 (429)
T ss_dssp             HHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCC
Confidence            9999887 78999999999999999999988888888999999999998854321     11244455678889999999


Q ss_pred             ceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          438 VLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       438 v~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      |++.+++  .+.+|+  ++.+|++|+++++++|+++++++
T Consensus       392 v~v~~~~--~~~~r~--~~~~t~e~i~~~l~~l~~~l~~~  427 (429)
T 3k28_A          392 VFLPPSQ--FEGLFL--STVHSDADIEATIAAAEIAMSKL  427 (429)
T ss_dssp             EECCSST--TSCBCC--CTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             eEEecCC--CCCEEE--ECCCCHHHHHHHHHHHHHHHHHH
Confidence            9999875  455676  68999999999999999998753

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=100.00  E-value=5.3e-60  Score=484.40  Aligned_cols=407  Identities=23%  Similarity=0.302  Sum_probs=326.4

Q ss_pred             CHHHHHHHHhhhcCCCccc---c----ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhc
Q 011777           56 SADQVFQKRKQFLGPSIFH---Y----YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL  128 (477)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~---~----~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~  128 (477)
                      ++.+++++.+++++.+...   .    ...|+++++|+|+|+||.||++||||.++++++++||+||+|++|+.+|++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~   85 (429)
T 4e77_A            6 KSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERG   85 (429)
T ss_dssp             HHHHHHHHHHHHSGGGCSSGGGGTTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhC
Confidence            6789999999998754321   1    24689999999999999999999999999999999999999999999999875


Q ss_pred             cccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCC
Q 011777          129 QHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWK  208 (477)
Q Consensus       129 ~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~  208 (477)
                      .+  ..++++...+|+++|++.++ +.++++|+|||+||++.|+++++.++++++||+++++|||.+...+...+.....
T Consensus        86 ~~--~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~  162 (429)
T 4e77_A           86 LS--FGAPTEMEVKMAQLVTDLVP-TMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALT  162 (429)
T ss_dssp             SC--CSSCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC---------------
T ss_pred             cc--cCCCCHHHHHHHHHHHhhCC-CCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccc
Confidence            43  23678889999999999998 5789999999999999999999988999999999999999998766554322211


Q ss_pred             CCCCC-CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcE
Q 011777          209 YPIPQ-GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGV  287 (477)
Q Consensus       209 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gil  287 (477)
                      ...+. .++.....+.....++++     +++|+++++.. ++++++|++||+++++|.+.++++|+++|+++|++||++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~d-----~~~le~~l~~~-~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~l  236 (429)
T 4e77_A          163 LGQPNSPGVPTDFAKHTLTCTYND-----LASVRQAFEQY-PQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGAL  236 (429)
T ss_dssp             ---CCCTTSCGGGGTTEEEECTTC-----HHHHHHHHHHS-TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCE
T ss_pred             cCCCCcCCCCCccCCceeecCCCC-----HHHHHHHHHhc-CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence            11111 122111111222223332     58888888742 357999999999999999999999999999999999999


Q ss_pred             EEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhccc---ccccCCCCcHHHHHHHHHH
Q 011777          288 CIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGLAV  364 (477)
Q Consensus       288 lI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~---~~~~t~~~~~~~~aaa~a~  364 (477)
                      ||+||||+|| |+| .++.++++++.||++||||++++|+|+|++++++++++.+...   .+++||++|+++++++.++
T Consensus       237 li~DEv~~g~-r~g-~~~~~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aa  314 (429)
T 4e77_A          237 LIIDEVMTGF-RVA-LAGAQDYYHVIPDLTCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFAC  314 (429)
T ss_dssp             EEEEETTTBT-TTB-TTCHHHHTTCCCSEEEEEGGGGTTSCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHH
T ss_pred             EEEeccccCc-ccC-cchHHHhcCCCCCeeeecccccCCCCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHH
Confidence            9999999999 998 6777889999999999999999999999999999999988753   4778999999999999999


Q ss_pred             HHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCC------CCccHHHHHHHHHHHHHcCc
Q 011777          365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKE------KTPAKAETAVLFEKLRELGV  438 (477)
Q Consensus       365 l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~------~~~~~~~~~~~~~~l~~~Gv  438 (477)
                      |+.++++++.+++++++++++++|+++..+++.+..+++.|+|+++++..+...      ..++......+.+.|+++||
T Consensus       315 l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi  394 (429)
T 4e77_A          315 LTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGV  394 (429)
T ss_dssp             HHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTE
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCe
Confidence            999887889999999999999999999888888888999999999998643110      11233455788999999999


Q ss_pred             eeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          439 LVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       439 ~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      ++.+++  ...+|  +++.+|++|+++++++|+++++++
T Consensus       395 ~v~~~~--~~~~~--~~~~~t~e~i~~~l~~l~~~l~~~  429 (429)
T 4e77_A          395 YLAPSA--FEAGF--MSLAHSNEDIQKTVNAARRCFAKL  429 (429)
T ss_dssp             ECCSST--TSCEE--CCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred             EEeecC--CCCEE--EeccCCHHHHHHHHHHHHHHHHhC
Confidence            999875  23344  579999999999999999998764

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=100.00  E-value=9.7e-60  Score=482.52  Aligned_cols=394  Identities=28%  Similarity=0.442  Sum_probs=316.7

Q ss_pred             ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-ccCChHHHHHHHHHHhhCCCC
Q 011777           76 YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-IYLHHAIADFAEALASKMPGN  154 (477)
Q Consensus        76 ~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~-~~~~~~~~~l~~~La~~~~~~  154 (477)
                      ...|+++++|+|+|+||.||++||||.+++++++|||+||+|++|+.+++++..+... .+.++...+++++|+++++.+
T Consensus         9 ~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~   88 (430)
T 3i4j_A            9 SKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLP   88 (430)
T ss_dssp             SSCCCEEEEEEBTEEEETTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCT
T ss_pred             CCCCceEEeeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCC
Confidence            4568999999999999999999999999999999999999999999999988655443 567788999999999999887


Q ss_pred             CCEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccCCCCCCCCCC--C--CeeeecCCCC
Q 011777          155 LKVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ--G--EIHHVVNPDP  224 (477)
Q Consensus       155 ~~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~  224 (477)
                      .++|+|+|||+||++.|+++++.+      ++++.||+++++|||++..++..++...++....+  .  ++..++.++.
T Consensus        89 ~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (430)
T 3i4j_A           89 TFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDP  168 (430)
T ss_dssp             TCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCT
T ss_pred             CCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcc
Confidence            889999999999999999999877      78899999999999999988887765443322211  2  5555555554


Q ss_pred             cCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCC-CCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCC
Q 011777          225 YHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQG-VGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH  303 (477)
Q Consensus       225 ~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~-~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~  303 (477)
                      +++     ....+++|+++++..+++++++|++||++| ++|.+++++++|++|+++|++||++||+||||+|||++| .
T Consensus       169 ~~~-----~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g-~  242 (430)
T 3i4j_A          169 ARN-----GAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCG-S  242 (430)
T ss_dssp             TSC-----HHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS-S
T ss_pred             cch-----hhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc-c
Confidence            432     334467888888743336789999999999 999999999999999999999999999999999999999 6


Q ss_pred             Ccccccc-CCCcceeeecccccCc-cceEEEEeCHHHHHhhccc----ccccCCCCcHHHHHHHHHHHHhhchhhHHHHH
Q 011777          304 YWGFETQ-GVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK----IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHC  377 (477)
Q Consensus       304 ~~~~~~~-gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~----~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~  377 (477)
                      +++++++ ++.||++||||++++| +|+|++++++++++.+...    .+.+||++|+++++|++++|+.++++++.+++
T Consensus       243 ~~~~~~~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~  322 (430)
T 3i4j_A          243 PLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAA  322 (430)
T ss_dssp             SSGGGGTTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             hhhhhhhcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHH
Confidence            8888998 9999999999999999 9999999999999988753    57789999999999999999998888899999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCcc--HHHHHHHHHHHHHcCceeecc-----CCCCCEE
Q 011777          378 ADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA--KAETAVLFEKLRELGVLVGKG-----GLHGNVF  450 (477)
Q Consensus       378 ~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~--~~~~~~~~~~l~~~Gv~v~~~-----~~~~~~i  450 (477)
                      ++++++++++|+++..+++.+..+++.|+|+++++.+ ...+.+.  .....++.+.|+++||++.++     +..++++
T Consensus       323 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~i  401 (430)
T 3i4j_A          323 KERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGD-LATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHL  401 (430)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC-------------CHHHHHHHHHHTTEECC-----------CEE
T ss_pred             HHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEecc-ccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEE
Confidence            9999999999999988888888999999999999862 2111111  112467889999999999987     2236899


Q ss_pred             EEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          451 RIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       451 Ri~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ||+|++.+|++++++++++|++++++
T Consensus       402 Ri~~~~~~t~e~i~~~l~~l~~~l~~  427 (430)
T 3i4j_A          402 LLGPPLSITAAEVDGLLALLAGALED  427 (430)
T ss_dssp             EECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999865

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=100.00  E-value=2.3e-59  Score=480.14  Aligned_cols=391  Identities=26%  Similarity=0.465  Sum_probs=318.4

Q ss_pred             CCHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccc
Q 011777           55 PSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI  134 (477)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~  134 (477)
                      +++++++++..+++...   +.+.|+++++|+|+|+||.||++||||.+|++++++||+||+|++|+.+++++..+....
T Consensus        27 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~~~  103 (433)
T 1z7d_A           27 KTPEDYINNELKYGAHN---YDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRA  103 (433)
T ss_dssp             CCHHHHHHHHHHHBCCC---CCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTT
T ss_pred             ccHHHHHHHHHHhcccc---cCCCCceEEeeecCEEEECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCccCC
Confidence            46788998888887543   224588999999999999999999999999999999999999999999999886554444


Q ss_pred             cCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc--------cCCceEEEEccCccCCcccccccccCCC
Q 011777          135 YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS--------TGNLGMIALRNAYHGGSSGTIGLTALNT  206 (477)
Q Consensus       135 ~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~--------~~~~~ii~~~~~yhG~~~~~~~~~~~~~  206 (477)
                      +.++...+++++|+++++  .++|+|++||+||++.|+++++.+        +++++||+++++|||++..++..++...
T Consensus       104 ~~~~~~~~l~~~la~~~g--~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~  181 (433)
T 1z7d_A          104 FFSVPLGICERYLTNLLG--YDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKK  181 (433)
T ss_dssp             SEEHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC----------------
T ss_pred             cCCHHHHHHHHHHHhhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCcc
Confidence            667788999999999984  589999999999999999998853        2568999999999999888777765332


Q ss_pred             CCCCCCC--CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHh
Q 011777          207 WKYPIPQ--GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKA  284 (477)
Q Consensus       207 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~  284 (477)
                      ++....+  .++..++.        + |    +++|+++++   .+++++|++||+++++|.++++++++++|+++|++|
T Consensus       182 ~~~~~~p~~~~v~~~~~--------~-d----~~~le~~l~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~  245 (433)
T 1z7d_A          182 CTSNFGPFAPQFSKVPY--------D-D----LEALEEELK---DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKY  245 (433)
T ss_dssp             ----------CEEEECT--------T-C----HHHHHHHHT---STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT
T ss_pred             ccccCCCCCCCeEEeCC--------C-C----HHHHHHHhC---CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHc
Confidence            2221111  23333322        1 1    588888885   257899999999999998899999999999999999


Q ss_pred             CcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHH
Q 011777          285 GGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLA  363 (477)
Q Consensus       285 gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a  363 (477)
                      |++||+||+|+||||+| .+++++.+++.||++||||++++| +|+|++++++++++.+....+.+||++||++++++.+
T Consensus       246 g~llI~DEv~~g~g~~g-~~~~~~~~~~~~di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a  324 (433)
T 1z7d_A          246 NVLFVADEVQTGLGRTG-KLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVE  324 (433)
T ss_dssp             TCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHH
T ss_pred             CCEEEEecCccCCCcCC-cchhhHhcCCCCCEEEECccccCCCCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHH
Confidence            99999999999999999 678888899999999999999999 9999999999999888776788999999999999999


Q ss_pred             HHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeecc
Q 011777          364 VLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG  443 (477)
Q Consensus       364 ~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~  443 (477)
                      +|+.++++++.+++++++++++++|+++...++.+..+++.|+|+++++..+.       ....++.+.|+++||++.++
T Consensus       325 al~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~-------~~~~~~~~~l~~~Gv~v~~~  397 (433)
T 1z7d_A          325 ALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL-------VNVLDICLKLKENGLITRDV  397 (433)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT-------CCHHHHHHHHHHTTEECCEE
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccCh-------hHHHHHHHHHHHCCeEEecC
Confidence            99998878899999999999999999886667777788999999999885321       01457888999999999986


Q ss_pred             CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          444 GLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       444 ~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +  ++++||+|++.+|++||++++++|++++++
T Consensus       398 ~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  428 (433)
T 1z7d_A          398 H--DKTIRLTPPLCITKEQLDECTEIIVKTVKF  428 (433)
T ss_dssp             T--TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             C--CCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence            4  689999999999999999999999998764

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=100.00  E-value=1.8e-59  Score=480.14  Aligned_cols=410  Identities=23%  Similarity=0.312  Sum_probs=339.6

Q ss_pred             CCCCHHHHHHHHhhhcCCCccc---c----ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHH
Q 011777           53 TGPSADQVFQKRKQFLGPSIFH---Y----YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQS  125 (477)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~---~----~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l  125 (477)
                      ..|++.+++++.+++++.+...   .    ...|+++++|+|+|+||.||++||||.+|++++++||+||+|++|+.+++
T Consensus         2 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~   81 (427)
T 3fq8_A            2 KTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAM   81 (427)
T ss_dssp             CCHHHHHHHHHHTTTSGGGSSSGGGGCTTTTSCCCCEEEEEBTEEEETTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHhhcCCCcccccccccccCCCCceEEEeeeCEEEECCCCEEEECCCchhhhccCCCCHHHHHHHHHHH
Confidence            4567899999999998754321   1    25689999999999999999999999999999999999999999999999


Q ss_pred             hhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCC
Q 011777          126 KLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALN  205 (477)
Q Consensus       126 ~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~  205 (477)
                      +++.+.  .+.++...+|+++|++.++ +.++|+|+|||+||++.|+++++.++++++||+++++|||++..++..++..
T Consensus        82 ~~~~~~--~~~~~~~~~la~~l~~~~~-~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~  158 (427)
T 3fq8_A           82 EKGTSF--GAPCALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSG  158 (427)
T ss_dssp             TTCSCC--SSCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTH
T ss_pred             HhCCCc--CCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCc
Confidence            876542  2477889999999999997 5789999999999999999999998999999999999999998887776543


Q ss_pred             CCCCCCCC-CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHh
Q 011777          206 TWKYPIPQ-GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKA  284 (477)
Q Consensus       206 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~  284 (477)
                      ......+. .++......+....++++     +++|+++++.. ++++++|++||+++++|.+.++++|+++|+++|++|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~~le~~l~~~-~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~  232 (427)
T 3fq8_A          159 VATLGLPSSPGVPKKTTANTLTTPYND-----LEAVKALFAEN-PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEH  232 (427)
T ss_dssp             HHHHTCCSCSSSCHHHHTTEEEEETTC-----HHHHHHHHHHS-TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHT
T ss_pred             ccccCCCCCCCCCCcccCceeecCCCC-----HHHHHHHHHhC-CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHc
Confidence            22111111 122110001111122222     58888888742 357999999999999999999999999999999999


Q ss_pred             CcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhccc---ccccCCCCcHHHHHHH
Q 011777          285 GGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGG  361 (477)
Q Consensus       285 gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~---~~~~t~~~~~~~~aaa  361 (477)
                      |++||+||+|+|| |+| ..+..+.+++.||++||||++++|+|+|++++++++++.+...   .+.+||++|+++++++
T Consensus       233 ~~~li~DEv~~g~-~~g-~~~~~~~~~~~~di~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~  310 (427)
T 3fq8_A          233 DALLVFDEVITGF-RIA-YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAG  310 (427)
T ss_dssp             TCEEEEECTTTBT-TTB-TTHHHHHTTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHH
T ss_pred             CCEEEEecccccc-ccC-cchhhHhcCCCCChhhhhhhhhCCcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHH
Confidence            9999999999999 888 6777888999999999999999999999999999999988652   4778999999999999


Q ss_pred             HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCC-----CCccHHHHHHHHHHHHHc
Q 011777          362 LAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKE-----KTPAKAETAVLFEKLREL  436 (477)
Q Consensus       362 ~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~~  436 (477)
                      .++|+.++++++.+++++++++++++|+++..+++....+++.|+++++++......     ..++......+.+.|+++
T Consensus       311 ~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  390 (427)
T 3fq8_A          311 IKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQ  390 (427)
T ss_dssp             HHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHC
Confidence            999999888889999999999999999998888887778899999999998543211     223444567889999999


Q ss_pred             CceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          437 GVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       437 Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      ||++.+++.  .  |+++++.+|++|+++++++|+++++++
T Consensus       391 Gi~v~~~~~--~--r~~~~~~~t~e~i~~~l~~l~~~l~~~  427 (427)
T 3fq8_A          391 GIYLAPSQF--E--AGFTSLAHTEEDIDATLAAARTVMSAL  427 (427)
T ss_dssp             TEECCSSTT--S--CEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CcEEecCCC--C--CEEeeCcCCHHHHHHHHHHHHHHHHhC
Confidence            999998652  2  677799999999999999999998764

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=100.00  E-value=3e-59  Score=479.93  Aligned_cols=394  Identities=26%  Similarity=0.454  Sum_probs=331.3

Q ss_pred             CCCCCHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccc
Q 011777           52 YTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA  131 (477)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~  131 (477)
                      ++++++++++++..+++...   +.+.|+++++|+|+|+||.||++||||.+|++++++||+||+|++|+.+++++..+.
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~  111 (439)
T 2oat_A           35 QGPPTSDDIFEREYKYGAHN---YHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLT  111 (439)
T ss_dssp             -CCCCHHHHHHHHHHHBCCC---CCCCSCEEEEEEBTEEEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCC
T ss_pred             CCCCCHHHHHHHHHHhcccc---cCCCCeeEEeeecCEEEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcc
Confidence            44667889999888887654   224689999999999999999999999999999999999999999999999886554


Q ss_pred             ccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc--------cCCceEEEEccCccCCccccccccc
Q 011777          132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS--------TGNLGMIALRNAYHGGSSGTIGLTA  203 (477)
Q Consensus       132 ~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~--------~~~~~ii~~~~~yhG~~~~~~~~~~  203 (477)
                      ...+.++...+++++|+++++  .++|+|++||+||++.|+++++.+        +++++||+++++|||.+..++..++
T Consensus       112 ~~~~~~~~~~~l~~~la~~~g--~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g  189 (439)
T 2oat_A          112 SRAFYNNVLGEYEEYITKLFN--YHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSST  189 (439)
T ss_dssp             CTTSEESSHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCC
T ss_pred             cCccCCHHHHHHHHHHHHhcC--CCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCC
Confidence            444566788999999999884  589999999999999999998753        2558999999999999887777655


Q ss_pred             CCCCCCCCCC--CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHH
Q 011777          204 LNTWKYPIPQ--GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIV  281 (477)
Q Consensus       204 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~  281 (477)
                      .+.++....+  .++..++.+         |    +++|+++++   .+++++|++||+++++|.++++++++++|+++|
T Consensus       190 ~~~~~~~~~p~~~~v~~~~~~---------d----~~~le~~l~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~  253 (439)
T 2oat_A          190 DPTSYDGFGPFMPGFDIIPYN---------D----LPALERALQ---DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELC  253 (439)
T ss_dssp             CHHHHTTSCSCCTTEEEECSS---------C----HHHHHHHTT---STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHH
T ss_pred             ChhcccCCCCCCCCeEEeCCC---------C----HHHHHHHhC---CCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHH
Confidence            3222211111  244444321         1    588888885   257899999999999998899999999999999


Q ss_pred             HHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcccccccCCCCcHHHHHH
Q 011777          282 RKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAG  360 (477)
Q Consensus       282 ~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aa  360 (477)
                      ++||++||+||+|+||||+| .+++++++++.||++||||++++| +|+|++++++++++.+....+.+||++||+++++
T Consensus       254 ~~~gillI~DEv~~g~g~~g-~~~~~~~~~~~~Di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa  332 (439)
T 2oat_A          254 TRHQVLFIADEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRV  332 (439)
T ss_dssp             HHTTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHH
T ss_pred             HHcCCEEEEeccccCCccCC-cchhHHHhCCCCcEEEecccccCCCCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHH
Confidence            99999999999999999999 778889999999999999999999 9999999999999888776788999999999999


Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCcee
Q 011777          361 GLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLV  440 (477)
Q Consensus       361 a~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v  440 (477)
                      +.++|+.++++++.+++++++++++++|+++  .++.+..+++.|+|+++++..+..      ....++.+.|+++||++
T Consensus       333 a~aal~~~~~~~~~~~~~~~~~~l~~~L~~l--~~~~~~~~~~~g~~~~v~l~~~~~------~~~~~l~~~l~~~Gv~v  404 (439)
T 2oat_A          333 AIAALEVLEEENLAENADKLGIILRNELMKL--PSDVVTAVRGKGLLNAIVIKETKD------WDAWKVCLRLRDNGLLA  404 (439)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHHTTS--CTTTEEEEEEETTEEEEEECCCSS------CCHHHHHHHHHHTTEEC
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh--cCCCcEEEEeeeeEEEEEEecCcc------HHHHHHHHHHHHCCeEE
Confidence            9999999887889999999999999999876  456666788999999998853210      11457888999999999


Q ss_pred             eccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          441 GKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       441 ~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      .+.+  ++++||+||+.+|++|+++++++|+++++++
T Consensus       405 ~~~~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  439 (439)
T 2oat_A          405 KPTH--GDIIRFAPPLVIKEDELRESIEIINKTILSF  439 (439)
T ss_dssp             CBSS--SSEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             ecCC--CCEEEEECccCCCHHHHHHHHHHHHHHHHhC
Confidence            9854  6899999999999999999999999998764

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=100.00  E-value=1.1e-59  Score=487.29  Aligned_cols=415  Identities=25%  Similarity=0.376  Sum_probs=327.1

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHH
Q 011777           39 PPQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVL  118 (477)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~  118 (477)
                      +|+.|.+..   +.++|++++++++..+++....   ...|+.+++|+|+||||.|||+||||++|+++++|||+||+|+
T Consensus        12 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~   85 (472)
T 1ohv_A           12 DYDGPLMKT---EVPGPRSRELMKQLNIIQNAEA---VHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALV   85 (472)
T ss_dssp             CCSSCBCCS---CSSCHHHHHHHHHHHHHSCCTT---CCCCBCGGGCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHH
T ss_pred             Ccccccccc---cCCCccHHHHHHHHHhhhcccc---ccCCceEEEEEcCEEEeCCCCEEEECCCCHhhcccCCCCHHHH
Confidence            556655543   3567788999999988875431   2345778999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhc--ccccccc---CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc-----------c---
Q 011777          119 NAIFEQSKLL--QHATTIY---LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS-----------T---  179 (477)
Q Consensus       119 ~Av~~~l~~~--~~~~~~~---~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~-----------~---  179 (477)
                      +|+.+|+...  .+....+   ..+...+++++|+++++.+.++|+|+|||+|||+.|+|+++.+           |   
T Consensus        86 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~  165 (472)
T 1ohv_A           86 KLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEE  165 (472)
T ss_dssp             HHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccc
Confidence            9999987543  2221111   2455667777777777767889999999999999999999744           1   


Q ss_pred             ----------C--CceEEEEccCccCCcccccccccCCCC-CCCCCCCCeeeecCCCCcCCCCCCCH-------HHHHHH
Q 011777          180 ----------G--NLGMIALRNAYHGGSSGTIGLTALNTW-KYPIPQGEIHHVVNPDPYHGSFGSDA-------ARYAQD  239 (477)
Q Consensus       180 ----------~--~~~ii~~~~~yhG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  239 (477)
                                |  +++||+++++|||++.+++++++...+ ....+..++.++++|. ++.++..+.       ...+++
T Consensus       166 ~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~d~~~  244 (472)
T 1ohv_A          166 LETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPR-LKYPLEEFVKENQQEEARCLEE  244 (472)
T ss_dssp             HHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCC-CCSSGGGCHHHHHHHHHHHHHH
T ss_pred             cccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCc-ccCccccccccchhHHHHHHHH
Confidence                      4  589999999999999999888765422 1122223444444442 333321110       124678


Q ss_pred             HHHHHhccC--CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCC--cc
Q 011777          240 LQDHIDFGT--SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVI--PD  315 (477)
Q Consensus       240 le~~i~~~~--~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~--pD  315 (477)
                      |+++|+...  ..++++|++||+++++|.++++++||++|+++|++||++||+||||+|||++| .+|+++++++.  ||
T Consensus       245 l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g-~~~~~~~~gv~~~~D  323 (472)
T 1ohv_A          245 VEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTG-KFWAHEHWGLDDPAD  323 (472)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS-SSSGGGGGCCSSCCS
T ss_pred             HHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCC-CchhccccCCCCCCC
Confidence            888886321  12799999999999999999999999999999999999999999999999999 67888888987  99


Q ss_pred             eeeeccc-ccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHh
Q 011777          316 IVTMAKG-IGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQER  394 (477)
Q Consensus       316 ivt~sK~-lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~  394 (477)
                      ++||||+ ++||    +++ ++++. .+....+++||++|++++++++++|+.+.++++.+++++++++++++|+++..+
T Consensus       324 i~t~sK~~l~GG----~~~-~~~~~-~~~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~  397 (472)
T 1ohv_A          324 VMTFSKKMMTGG----FFH-KEEFR-PNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQAR  397 (472)
T ss_dssp             EEEECGGGSSEE----EEE-CGGGS-CSSSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEccccccCC----ccC-chhhc-ccccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999 6764    444 66652 234456789999999999999999999887889999999999999999998767


Q ss_pred             CC-CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          395 HD-IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       395 ~~-~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      ++ .+..+++.|+|+++++..        ......+.+.|+++||++.+++  .++|||+|++.+|++||++++++|+++
T Consensus       398 ~~~~v~~~~~~g~~~~~~~~~--------~~~~~~~~~~l~~~Gv~~~~~g--~~~iRi~~~~~~t~e~i~~~~~~l~~~  467 (472)
T 1ohv_A          398 YPQFISRVRGRGTFCSFDTPD--------ESIRNKLISIARNKGVMLGGCG--DKSIRFRPTLVFRDHHAHLFLNIFSDI  467 (472)
T ss_dssp             CTTTCEEEEEETTEEEEECSS--------HHHHHHHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCcEEeecCCceEEEEEeCC--------hhHHHHHHHHHHHCCeEEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            77 477889999999987631        2245678899999999999864  579999999999999999999999999


Q ss_pred             HhhC
Q 011777          474 MSKL  477 (477)
Q Consensus       474 l~~l  477 (477)
                      ++++
T Consensus       468 l~~~  471 (472)
T 1ohv_A          468 LADF  471 (472)
T ss_dssp             HHTC
T ss_pred             HHhc
Confidence            8764

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=100.00  E-value=3.2e-64  Score=515.87  Aligned_cols=392  Identities=21%  Similarity=0.282  Sum_probs=330.0

Q ss_pred             CCCHHHHHHHHhhhcCCCccc----cccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc
Q 011777           54 GPSADQVFQKRKQFLGPSIFH----YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ  129 (477)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~  129 (477)
                      .|++++++++++++++.++..    +...|+++++|+|+||||.|||+||||.+|++++++||+||+|++|+.+|++++.
T Consensus        54 ~~~s~~l~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~G~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~  133 (465)
T 2yky_A           54 NPVSAGHHERARRSMPGGNTRSILFHRPFPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGL  133 (465)
Confidence            667899999999998754322    3346999999999999999999999999999999999999999999999998842


Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                        ...|+++...+|+++|++++| +.++++|+|||+|||+.|++++|.++++++||+++++|||++.+++  ++ + .. 
T Consensus       134 --~~~~~~~~~~~Lae~L~~~~p-~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~--sg-~-~~-  205 (465)
T 2yky_A          134 --NLSTQTENEALFAEAVCDRFP-SIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFA--SG-H-AP-  205 (465)
Confidence              234678889999999999997 5789999999999999999999999999999999999999999877  22 0 00 


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                          .++..    .....++++     +++|+++++.. ++++++|++||+++++|.++++++|+++|+++|++||++||
T Consensus       206 ----~g~~~----~~~~~~~~d-----~~~l~~~l~~~-~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI  271 (465)
T 2yky_A          206 ----TNAPY----HVVLGVYND-----VEGTADLLKRH-GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLI  271 (465)
Confidence                12211    111122322     47788877632 35799999999999999999999999999999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcc-----cccccCCCCcHHHHHHHHHH
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQ-----KIQFNTFGGNPVCSAGGLAV  364 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~-----~~~~~t~~~~~~~~aaa~a~  364 (477)
                      +||||+ | |+| .+++++++++.||++||||++++|+|+||+++++++++.+..     ..+.+||++||++|+|++++
T Consensus       272 ~DEv~~-~-r~g-~~~a~~~~gv~pDi~t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aa  348 (465)
T 2yky_A          272 FDEVMT-S-RLS-GGGAQEMLGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAA  348 (465)
Confidence            999999 6 888 678889999999999999999999999999999999998876     24779999999999999999


Q ss_pred             HHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCC-----CCCCccHHHHHHHHHHHHHcCce
Q 011777          365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDR-----KEKTPAKAETAVLFEKLRELGVL  439 (477)
Q Consensus       365 l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~-----~~~~~~~~~~~~~~~~l~~~Gv~  439 (477)
                      |+.++++++.+++++++++++++|+++..+++.+.++++.|+|+++++..+.     ..+.++......+.+.|+++||+
T Consensus       349 L~~l~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~  428 (465)
T 2yky_A          349 LTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIY  428 (465)
Confidence            9999888899999999999999999998888878889999999999986411     11112233456788999999999


Q ss_pred             eeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          440 VGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       440 v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +.|++ ++.     ||+.+|++||++++++|++++++
T Consensus       429 v~p~~-~~~-----~s~~~t~edid~~l~~l~~~l~~  459 (465)
T 2yky_A          429 LAPRG-MYA-----LSLEIADAGRDAFAEALADFIGE  459 (465)
Confidence            99875 222     78999999999999999998865

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=100.00  E-value=4e-58  Score=465.18  Aligned_cols=372  Identities=29%  Similarity=0.468  Sum_probs=326.5

Q ss_pred             ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCC
Q 011777           76 YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNL  155 (477)
Q Consensus        76 ~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~  155 (477)
                      ...|+++++|+|+++||.||++||||.++++++++||+||+|++|+.+++++..+....+.++...+++++|+++++  .
T Consensus        16 ~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--~   93 (395)
T 3nx3_A           16 KRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASA--L   93 (395)
T ss_dssp             GSCSCBEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHHHHHHHHT--C
T ss_pred             CCCCceEEeeeeeEEEECCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC--C
Confidence            45689999999999999999999999999999999999999999999999887766556778899999999999985  5


Q ss_pred             CEEEEeCChHHHHHHHHHHHHhc-----cCCceEEEEccCccCCcccccccccCCCCCCCCCC--CCeeeecCCCCcCCC
Q 011777          156 KVVYFVNSGTEANELAMLMARLS-----TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ--GEIHHVVNPDPYHGS  228 (477)
Q Consensus       156 ~~v~~~~sGseA~~~Al~~ar~~-----~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  228 (477)
                      ++++|++||+||++.|+++++.+     +++++||+++++|||.+..++..++.+.++....+  .++..++.++     
T Consensus        94 ~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----  168 (395)
T 3nx3_A           94 ERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYND-----  168 (395)
T ss_dssp             SEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTC-----
T ss_pred             CeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCCC-----
Confidence            79999999999999999999877     67899999999999999988888764433222211  2333333211     


Q ss_pred             CCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccc
Q 011777          229 FGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE  308 (477)
Q Consensus       229 ~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~  308 (477)
                              +++|+++++    +++++|++||+++++|.++++++++++|.++|++||++||+||+|+|||++| .+++++
T Consensus       169 --------~~~l~~~l~----~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g-~~~~~~  235 (395)
T 3nx3_A          169 --------ISSVEKLVN----EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSG-KFFAYE  235 (395)
T ss_dssp             --------HHHHHTTCC----TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSGGG
T ss_pred             --------HHHHHHhcc----CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCC-cchhHH
Confidence                    577887775    5789999999999999999999999999999999999999999999999999 678888


Q ss_pred             ccCCCcceeeecccccCccceEEEEeCHHH-HHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Q 011777          309 TQGVIPDIVTMAKGIGNGLPLGAVVTTPEI-ANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGR  387 (477)
Q Consensus       309 ~~gv~pDivt~sK~lg~G~pig~v~~~~~~-~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~  387 (477)
                      .+++.||++||||++++|+|+|++++++++ ++.+....+++||++|+++++++.++|+.++++++.++++++++++++.
T Consensus       236 ~~~~~~d~~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~  315 (395)
T 3nx3_A          236 HAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQS  315 (395)
T ss_dssp             GGTCCCSEEEECGGGTTTSCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             hcCCCCCEEEecccccCCCceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999 8888877788999999999999999999887788999999999999999


Q ss_pred             HHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHH
Q 011777          388 LRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLV  467 (477)
Q Consensus       388 L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l  467 (477)
                      |.++..+++.+..+++.|+++++++....        ....+.+.|+++||++.+++  .+++||+|++.+|++|+++++
T Consensus       316 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~l~~~Gi~v~~~~--~~~iRi~~~~~~t~e~i~~~l  385 (395)
T 3nx3_A          316 LDELINEFDFCKKRKGLGFMQGLSLDKSV--------KVAKVIQKCQENALLLISCG--ENDLRFLPPLILQKEHIDEMS  385 (395)
T ss_dssp             HHHHHHHCTTEEEEEEETTEEEEEECTTS--------CHHHHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHH
T ss_pred             HHHHHHhCCCeEEEEeEEEEEEEEeCCcc--------hHHHHHHHHHHCCCEEecCC--CCEEEEECCCCCCHHHHHHHH
Confidence            99988888888889999999999985321        24578889999999999875  689999999999999999999


Q ss_pred             HHHHHHHhhC
Q 011777          468 DALDYSMSKL  477 (477)
Q Consensus       468 ~~l~~~l~~l  477 (477)
                      ++|+++++++
T Consensus       386 ~~l~~~l~~~  395 (395)
T 3nx3_A          386 EKLRKALKSF  395 (395)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhC
Confidence            9999998753

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=100.00  E-value=5.3e-58  Score=472.15  Aligned_cols=400  Identities=26%  Similarity=0.361  Sum_probs=325.1

Q ss_pred             HHHHHHHhhhcCCCccccccCceeEEeeeccEEEe-CCCCEEEeecCCcccccCCCCCHHHH-H-HHHH---HHhhcccc
Q 011777           58 DQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFD-ENGRRYLDAFAGIVTVSCGHCHPDVL-N-AIFE---QSKLLQHA  131 (477)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d-~dG~~ylD~~~g~~~~~lGh~~p~v~-~-Av~~---~l~~~~~~  131 (477)
                      +++.++..+++...   .++.++.+++|+|+|+|| .||++||||.++++++++||+||+|+ + |+.+   +++++.+.
T Consensus        18 ~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~d~~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~   94 (449)
T 2cjg_A           18 DRVHEVLGRSMLVD---GLDIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPS   94 (449)
T ss_dssp             GGHHHHHHTTSCCC---SCSSCBCTTTCBBTEEEBTTTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHhhccc---CCCeeEEEeeeeeCEEEECCCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            46777777765321   233334456999999999 99999999999999999999999999 9 9999   88876554


Q ss_pred             ccccCChHHHHHHHHHHhhCC-CCCCEEEEeCChHHHHHHHHHHHHhccC------------CceEEEEccCccCCcccc
Q 011777          132 TTIYLHHAIADFAEALASKMP-GNLKVVYFVNSGTEANELAMLMARLSTG------------NLGMIALRNAYHGGSSGT  198 (477)
Q Consensus       132 ~~~~~~~~~~~l~~~La~~~~-~~~~~v~~~~sGseA~~~Al~~ar~~~~------------~~~ii~~~~~yhG~~~~~  198 (477)
                      ...|.++...+++++|+++++ .+.++|+|++||+|||+.|+++++.+++            +++||+++++|||++..+
T Consensus        95 ~~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~  174 (449)
T 2cjg_A           95 NSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYT  174 (449)
T ss_dssp             TTTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTG
T ss_pred             CcccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccch
Confidence            445778889999999999986 4578999999999999999999987654            789999999999999998


Q ss_pred             cccccC-CCCCCCCCC--CCeeeecCCC--CcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchh
Q 011777          199 IGLTAL-NTWKYPIPQ--GEIHHVVNPD--PYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGY  273 (477)
Q Consensus       199 ~~~~~~-~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~  273 (477)
                      ++.++. +.++..+.+  .++..++.++  ..++.+..+....+++|+++++.. .+++++|++||++|++|.++++++|
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~-~~~~~~vi~ep~~~~~G~~~~~~~~  253 (449)
T 2cjg_A          175 LSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETR-PHDIACFVAEPIQGEGGDRHFRPEF  253 (449)
T ss_dssp             GGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHS-TTTEEEEEECSEETTTTCEECCHHH
T ss_pred             hhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhc-CCceEEEEEeCcCCCCCCccCCHHH
Confidence            888764 222222211  2344443332  111000001123456788888632 3578999999999999989999999


Q ss_pred             HHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhh-----cccccc
Q 011777          274 LKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVM-----AQKIQF  348 (477)
Q Consensus       274 l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~-----~~~~~~  348 (477)
                      |++|+++|++||++||+||||+||||+| .+|+++++++.||++||||++    |+|++++++++++.+     ....++
T Consensus       254 l~~l~~l~~~~g~lli~DEv~~g~g~~g-~~~~~~~~~~~~di~t~sK~l----~iG~~~~~~~~~~~l~~~~~~~~~~~  328 (449)
T 2cjg_A          254 FAAMRELCDEFDALLIFDEVQTGCGLTG-TAWAYQQLDVAPDIVAFGKKT----QVCGVMAGRRVDEVADNVFAVPSRLN  328 (449)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTTTTTTS-SSSTHHHHTCCCSEEEECGGG----SSEEEEECGGGGGSTTCTTTSTTSSC
T ss_pred             HHHHHHHHHHCCcEEEEeccccCCCccC-cceeecccCCCceEEEecCcc----cEEEEEECHHHhhhhhhcccCCcccc
Confidence            9999999999999999999999999999 677788889999999999999    899999999998862     334567


Q ss_pred             cCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCC-ceeeeccceeEEEEEeeCCCCCCccHHHHH
Q 011777          349 NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDI-IGDVRGRGLMVGMELVTDRKEKTPAKAETA  427 (477)
Q Consensus       349 ~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~-~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~  427 (477)
                      +||++|+++++|+.++|+.++++++.+++++++++++++|+++..+++. +..+++.|+|+++++..        .....
T Consensus       329 ~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~~--------~~~~~  400 (449)
T 2cjg_A          329 STWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPT--------TADRD  400 (449)
T ss_dssp             CSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECSS--------HHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEECC--------hHHHH
Confidence            8999999999999999998877889999999999999999998777776 77889999999987731        22356


Q ss_pred             HHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          428 VLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       428 ~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ++.+.|+++||++.+++  .+++||+|++.+|+++|++++++|++++++
T Consensus       401 ~~~~~l~~~Gv~v~~~g--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  447 (449)
T 2cjg_A          401 ELIRQLWQRAVIVLPAG--ADTVRFRPPLTVSTAEIDAAIAAVRSALPV  447 (449)
T ss_dssp             HHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCeEEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            78889999999999875  589999999999999999999999999865

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=100.00  E-value=2.1e-57  Score=465.75  Aligned_cols=409  Identities=22%  Similarity=0.321  Sum_probs=327.6

Q ss_pred             CCCCHHHHHHHHhhhcCCCcc---c-c-ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhh
Q 011777           53 TGPSADQVFQKRKQFLGPSIF---H-Y-YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKL  127 (477)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~---~-~-~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~  127 (477)
                      ++|++++++++.+++++.+..   . + .+.|+.+++|+|+|+||.||++||||.++++++++||+||+|++|+.+++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~   87 (434)
T 2epj_A            8 SGEKSRMLFERTKELFPGGVNSPVRAAVKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALAR   87 (434)
T ss_dssp             -CHHHHHHHHHHTTTSGGGSSSGGGGGCSSSCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT
T ss_pred             CCcchHHHHHHHHhhcCCCcCcccccccCCCCeeEEeeecCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHh
Confidence            567889999999999865431   1 2 3458999999999999999999999999999999999999999999999987


Q ss_pred             ccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCC
Q 011777          128 LQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTW  207 (477)
Q Consensus       128 ~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~  207 (477)
                      ..+  ..+.++...+++++|+++++ +.++|+|++||+||+++|+++||.++++++||+++++|||++..++..++....
T Consensus        88 ~~~--~~~~~~~~~~l~~~la~~~~-~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~  164 (434)
T 2epj_A           88 GWL--YGAPGEAEVLLAEKILGYVK-RGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAA  164 (434)
T ss_dssp             CSC--CSSCCHHHHHHHHHHHHHHC-TTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC----
T ss_pred             CCC--CCCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCcc
Confidence            432  24677888999999999986 578999999999999999999988889999999999999999887766543211


Q ss_pred             CCCCCC-CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCc
Q 011777          208 KYPIPQ-GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGG  286 (477)
Q Consensus       208 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gi  286 (477)
                      ....+. .++.....+..+..+++ |    +++|+++++.. ++++++|++||+++++|.+.++++|+++|+++|++||+
T Consensus       165 ~~~~p~~~g~~~~~~~~~~~~~~~-d----~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~  238 (434)
T 2epj_A          165 HYGVPTSAGVPEAVARLTLVTPYN-D----VEALERVFAEY-GDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGA  238 (434)
T ss_dssp             --CEESSTTCCHHHHTTEEEEETT-C----HHHHHHHHHHH-GGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTC
T ss_pred             ccCCCCCCCCCCcccCceEecCCC-C----HHHHHHHHHhC-CCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCC
Confidence            110000 12110000000111122 1    57888888632 24789999999999999889999999999999999999


Q ss_pred             EEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhccc---ccccCCCCcHHHHHHHHH
Q 011777          287 VCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGLA  363 (477)
Q Consensus       287 llI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~---~~~~t~~~~~~~~aaa~a  363 (477)
                      +||+||+|+|| ++| ..+.++++++.||++||||++++|+|+|++++++++++.+...   .+++||++|+++++++.+
T Consensus       239 ~lI~DEv~~g~-~~g-~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a  316 (434)
T 2epj_A          239 LLILDEVVTGF-RLG-LEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLA  316 (434)
T ss_dssp             EEEEEETTTTT-TSS-TTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHH
T ss_pred             EEEEEcchhce-eCC-cchhhHHhCCCCCeeeecchhcCCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHH
Confidence            99999999999 777 5677788899999999999999999999999999999887652   366899999999999999


Q ss_pred             HHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCC-----CCCccHHHHHHHHHHHHHcCc
Q 011777          364 VLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRK-----EKTPAKAETAVLFEKLRELGV  438 (477)
Q Consensus       364 ~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~-----~~~~~~~~~~~~~~~l~~~Gv  438 (477)
                      +|+.++++++.+++++++++++++|+++..+++.+..+++.|+|+++++..+..     .+.++......+.+.|+++||
T Consensus       317 ~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv  396 (434)
T 2epj_A          317 TLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGV  396 (434)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTE
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCe
Confidence            999987788999999999999999999876667666788999999999853110     011223446678899999999


Q ss_pred             eeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          439 LVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       439 ~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ++.+++.  .  |+++++.+|++|+++++++|++++++
T Consensus       397 ~v~~~~~--~--~~~~~~~~t~e~i~~~l~~l~~~l~~  430 (434)
T 2epj_A          397 FIAPSNL--E--AVFTGLPHQGEALEIAVEGLRSSLKT  430 (434)
T ss_dssp             ECCSSTT--S--CEECCTTCSHHHHHHHHHHHHHHHHH
T ss_pred             EEeccCC--C--cEEEeccCCHHHHHHHHHHHHHHHHH
Confidence            9998752  3  35568999999999999999998864

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=100.00  E-value=3.5e-57  Score=462.19  Aligned_cols=389  Identities=29%  Similarity=0.469  Sum_probs=313.9

Q ss_pred             HHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccC
Q 011777           57 ADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL  136 (477)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~  136 (477)
                      ..++.++..+++.+.   +.+.|+++++|+|+|+||.||++||||.++++++++||+||+|++|+.+++++..+....|.
T Consensus        21 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~   97 (420)
T 2pb2_A           21 TAITRATFDEVILPV---YAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFT   97 (420)
T ss_dssp             ---------------------CCSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTSC
T ss_pred             HHHHHHHHHHhhhcc---ccCCCceEEeeecCEEEECCCCEEEEccccccccccCCCCHHHHHHHHHHHHhcccccCccC
Confidence            345666667766543   23468999999999999999999999999999999999999999999999988665444567


Q ss_pred             ChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccCCCCCCC
Q 011777          137 HHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTALNTWKYP  210 (477)
Q Consensus       137 ~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  210 (477)
                      .+...+++++|+++++  .++|+|++||+||++.|+++++.+      +++++||+++++|||.+...+..++...++..
T Consensus        98 ~~~~~~l~~~la~~~g--~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~  175 (420)
T 2pb2_A           98 NEPALRLGRKLIDATF--AERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDG  175 (420)
T ss_dssp             CHHHHHHHHHHHHHSS--CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTT
T ss_pred             CHHHHHHHHHHHhhCC--CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCcccccc
Confidence            7889999999999985  579999999999999999998865      57779999999999998877766553322111


Q ss_pred             CC--CCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEE
Q 011777          211 IP--QGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVC  288 (477)
Q Consensus       211 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill  288 (477)
                      +.  ..++..++.+         |    +++|+++++    +++++|++||++|++|+++++++++++|+++|++||++|
T Consensus       176 ~~p~~~~~~~~~~~---------d----~~~le~~i~----~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~l  238 (420)
T 2pb2_A          176 FGPKPADIIHVPFN---------D----LHAVKAVMD----DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALL  238 (420)
T ss_dssp             SSSCCSCEEEECTT---------C----HHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEE
T ss_pred             CCCCCCCeEEecCC---------C----HHHHHHHhc----cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEE
Confidence            11  1234443321         1    578888876    478999999999999988899999999999999999999


Q ss_pred             EEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhh
Q 011777          289 IADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVI  368 (477)
Q Consensus       289 I~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l  368 (477)
                      |+||+|+||+++| .+++++.+++.||++||||++++|+|+|++++++++++.+....+..||++|+++++++.++|+.+
T Consensus       239 I~Dev~~g~~~~g-~~~~~~~~~~~~diit~sK~l~~G~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~  317 (420)
T 2pb2_A          239 VFDEVQCGMGRTG-DLFAYMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDII  317 (420)
T ss_dssp             EEECTTTTTTTTS-SSSHHHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHH
T ss_pred             EEEcCCcCcccCC-cHHHHHhcCCCCCeEEecccccCCCceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHH
Confidence            9999999999999 677778889999999999999999999999999999888876567789999999999999999998


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCC
Q 011777          369 DKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGN  448 (477)
Q Consensus       369 ~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~  448 (477)
                      +++++.+++++++++++++|+++...++.+..+++.|+|+++++..+.      .....++.+.|+++||++.+++  .+
T Consensus       318 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~v~~~~~~------~~~~~~l~~~l~~~Gi~v~~~~--~~  389 (420)
T 2pb2_A          318 NTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKY------KGRARDFLYAGAEAGVMVLNAG--AD  389 (420)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECGGG------TTCHHHHHHHHHHTTEECEESS--TT
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecceEEEEEECCCc------hHHHHHHHHHHHHCCCEEEeCC--CC
Confidence            878899999999999999999876556777778899999999884321      0014578889999999999875  68


Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          449 VFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       449 ~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ++||+||+.++++|+++++++|++++++
T Consensus       390 ~iRl~~~~~~t~eei~~~~~~l~~~l~~  417 (420)
T 2pb2_A          390 VMRFAPSLVVEEADIHEGMQRFAQAVGK  417 (420)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998864

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=100.00  E-value=2.6e-56  Score=456.33  Aligned_cols=404  Identities=25%  Similarity=0.356  Sum_probs=324.2

Q ss_pred             CCHHHHHHHHhhhcCCCcc---c-c---ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhh
Q 011777           55 PSADQVFQKRKQFLGPSIF---H-Y---YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKL  127 (477)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~---~-~---~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~  127 (477)
                      |++++++++++++++.+..   . +   ...|+++++++|+++||.||++||||.++.+++++||+||+|++|+.+++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~   83 (424)
T 2e7u_A            4 PISEAYFQEAKRHIPGGVSSPVRAFKAVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLER   83 (424)
T ss_dssp             HHHHHHHHHHHHHSGGGSSSGGGGCTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHhcCCCcCCcceeccccCCCCeeEEeeecCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHh
Confidence            5688999999999875321   1 1   1248999999999999999999999999999999999999999999999987


Q ss_pred             ccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCC
Q 011777          128 LQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTW  207 (477)
Q Consensus       128 ~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~  207 (477)
                      ..+  ..+.++...+++++|+++++ +.++|+|++||+||++.|+++||.++++++||+++++|||++..++..++....
T Consensus        84 ~~~--~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~  160 (424)
T 2e7u_A           84 GLT--FGAPSPLEVALAKKVKRAYP-FVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGAL  160 (424)
T ss_dssp             CSC--CSSCCHHHHHHHHHHHHHCT-TCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSC
T ss_pred             CCC--CCCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCccc
Confidence            432  23677889999999999987 578999999999999999999998889999999999999998877765433211


Q ss_pred             CCCCCC-CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCc
Q 011777          208 KYPIPQ-GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGG  286 (477)
Q Consensus       208 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gi  286 (477)
                      ....+. .++.....+..+..+++ |    +++|+++++.. ++++++|++||+++++|.++++++|+++|+++ ++||+
T Consensus       161 ~~~~p~~~g~~~~~~~~~~~~~~~-d----~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~  233 (424)
T 2e7u_A          161 TLGVPSSAGVPEEYAKLTLVLEYN-D----PEGLREVLKRR-GEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGV  233 (424)
T ss_dssp             CBCEESSTTCCHHHHTTEEEECTT-C----HHHHHHHHHHH-GGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTC
T ss_pred             ccCCCCCCCCCCccCCceEeCCCC-C----HHHHHHHHHhC-CCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCC
Confidence            110000 12110000001111222 2    57888888632 24789999999999999889999999999999 99999


Q ss_pred             EEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhccc---ccccCCCCcHHHHHHHHH
Q 011777          287 VCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK---IQFNTFGGNPVCSAGGLA  363 (477)
Q Consensus       287 llI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~---~~~~t~~~~~~~~aaa~a  363 (477)
                      +||+||+|+|| ++| ..+.++++++.||++||||++++|+|+|++++++++++.+...   .+++||++|+++++++.+
T Consensus       234 ~lI~DEv~~g~-~~g-~~~~~~~~~~~~di~s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a  311 (424)
T 2e7u_A          234 LLIADEVMTGF-RLA-FGGATELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLA  311 (424)
T ss_dssp             EEEEECTTTTT-TSS-TTHHHHHHTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHH
T ss_pred             EEEEecCcccc-ccc-hhHHHHHhCCCcchhhhhhhhhCCcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHH
Confidence            99999999999 788 5677788899999999999999999999999999999888652   366899999999999999


Q ss_pred             HHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCC-----CCCccHHHHHHHHHHHHHcC
Q 011777          364 VLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRK-----EKTPAKAETAVLFEKLRELG  437 (477)
Q Consensus       364 ~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~-----~~~~~~~~~~~~~~~l~~~G  437 (477)
                      +|+.+++ +++.+++++++++++++|+++..+++.+..+++.|+|+++++.....     .+.++.....++.+.|+++|
T Consensus       312 al~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  391 (424)
T 2e7u_A          312 TLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRG  391 (424)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCC
Confidence            9999877 88999999999999999999877777766788999999998853110     01122344567889999999


Q ss_pred             ceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          438 VLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       438 v~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      |++.+++.  .  |+++++.+|++++++++++|++++
T Consensus       392 v~v~~~~~--~--~~~~~~~~t~~~i~~~l~~l~~~l  424 (424)
T 2e7u_A          392 IYWPPSNF--E--AAFLSVAHREEDVEKTLEALRKAL  424 (424)
T ss_dssp             EECCSSSS--S--CEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             eEEeccCC--C--ceEeeccCCHHHHHHHHHHHHHhC
Confidence            99998752  2  345679999999999999998864

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=100.00  E-value=1.8e-55  Score=453.33  Aligned_cols=393  Identities=27%  Similarity=0.425  Sum_probs=323.9

Q ss_pred             cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-ccCChHHHHHHHHHHhhCCCCC
Q 011777           77 QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-IYLHHAIADFAEALASKMPGNL  155 (477)
Q Consensus        77 ~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~-~~~~~~~~~l~~~La~~~~~~~  155 (477)
                      +.|+++++|+|+++||.||++|||+.++.+++++||+||+|++|+.+++++..+... .+..+...+++++|+++++.+.
T Consensus        31 ~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~  110 (449)
T 3a8u_X           31 RDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNL  110 (449)
T ss_dssp             HSCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTE
T ss_pred             CCCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCC
Confidence            358999999999999999999999999999999999999999999999987542122 4667888999999999998778


Q ss_pred             CEEEEeCChHHHHHHHHHHHHhcc------CCceEEEEccCccCCcccccccccCCCCCCCCC--CCCeeeecCCCCcCC
Q 011777          156 KVVYFVNSGTEANELAMLMARLST------GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP--QGEIHHVVNPDPYHG  227 (477)
Q Consensus       156 ~~v~~~~sGseA~~~Al~~ar~~~------~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  227 (477)
                      ++|+|++||+||++.|+++++.++      ++++||+++++|||.+..++..++.+.++..+.  ..++..++.|..++.
T Consensus       111 ~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~  190 (449)
T 3a8u_X          111 NHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASN  190 (449)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGG
T ss_pred             CEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccC
Confidence            899999999999999999988755      678999999999999887777655332222111  146677776665554


Q ss_pred             CCC-----CCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC
Q 011777          228 SFG-----SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS  302 (477)
Q Consensus       228 ~~~-----~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~  302 (477)
                      ++.     .....++++|+++++...++++++|++||+++++|.++++++|+++|+++|++||++||+||+|+|||++| 
T Consensus       191 ~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g-  269 (449)
T 3a8u_X          191 AYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG-  269 (449)
T ss_dssp             TTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS-
T ss_pred             ccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccC-
Confidence            321     11333468888888643224789999999999999889999999999999999999999999999999999 


Q ss_pred             CCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhccc---------ccccCCCCcHHHHHHHHHHHHhhchhh
Q 011777          303 HYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK---------IQFNTFGGNPVCSAGGLAVLRVIDKER  372 (477)
Q Consensus       303 ~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~---------~~~~t~~~~~~~~aaa~a~l~~l~~~~  372 (477)
                      .++.++.+++.||++|+||++++| +|+|++++++++++.+...         .+.+|+++|+++++++.++|+.+++++
T Consensus       270 ~~~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~  349 (449)
T 3a8u_X          270 SMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKEN  349 (449)
T ss_dssp             SSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHTT
T ss_pred             cchhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhcC
Confidence            677778889999999999999998 9999999999999888653         356799999999999999999888778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEE
Q 011777          373 RQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRI  452 (477)
Q Consensus       373 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi  452 (477)
                      +.+++++++++++++|+++ .+++.+..+++.|+++++++.......   ......+.+.|+++||++.+++   +++||
T Consensus       350 ~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~---~~~~~~~~~~l~~~Gv~v~~~g---~~iRi  422 (449)
T 3a8u_X          350 LVQSVAEVAPHFEKALHGI-KGAKNVIDIRNFGLAGAIQIAPRDGDA---IVRPFEAGMALWKAGFYVRFGG---DTLQF  422 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-TTSTTEEEEEEETTEEEEEECCBTTBS---SHHHHHHHHHHHHHTEECEEET---TEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHH-hcCCCeEEEeeeEEEEEEEEecCcccc---cccHHHHHHHHHHCCcEEecCC---CEEEE
Confidence            9999999999999999874 346666778889999999985432111   0012358888889999999873   79999


Q ss_pred             eCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          453 KPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       453 ~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      +|++.+|++|+++++++|+++++++
T Consensus       423 s~~~~~t~~~i~~~l~~l~~~l~~~  447 (449)
T 3a8u_X          423 GPTFNSKPQDLDRLFDAVGEVLNKL  447 (449)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             ECCCcCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998753

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=1.4e-54  Score=442.78  Aligned_cols=398  Identities=28%  Similarity=0.467  Sum_probs=321.6

Q ss_pred             HHHHHHHHhhh-cCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCC-CHHHHHHHHHHHhhcccc-cc
Q 011777           57 ADQVFQKRKQF-LGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHC-HPDVLNAIFEQSKLLQHA-TT  133 (477)
Q Consensus        57 ~~~~~~~~~~~-~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~-~p~v~~Av~~~l~~~~~~-~~  133 (477)
                      +++++++..++ +.+.... +..|+.+.+++|+++||.||++||||.++.+++++||+ ||+|++|+.+++++..+. ..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~   81 (419)
T 2eo5_A            3 SRKIIEESDIYLATSTRDP-ELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAAN   81 (419)
T ss_dssp             HHHHHHHHHHHSCCCCCSS-CCCCCCEEEEEBTEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCS
T ss_pred             hHHHHHHHHhhhccccccc-cCCCceEEeeecCEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCcccccc
Confidence            56788888777 6654332 24689999999999999999999999999999999999 999999999999876442 23


Q ss_pred             ccCChHHHHHHHHHHhhCCCC-CCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCC-CCCCCC
Q 011777          134 IYLHHAIADFAEALASKMPGN-LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALN-TWKYPI  211 (477)
Q Consensus       134 ~~~~~~~~~l~~~La~~~~~~-~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~~~~  211 (477)
                      .|.++...+++++|+++++.+ .++|+|++||+||++.|+++++.++ +++||+++++|||.+..+++.++.. .++...
T Consensus        82 ~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~-~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~  160 (419)
T 2eo5_A           82 DFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTG-RKYIIAFLGGFHGRTFGSISLTASKAVQRSIV  160 (419)
T ss_dssp             CSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTS-CCEEEEETTCCCCSSHHHHHHCCSCGGGGCSS
T ss_pred             ccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhh-CCcEEEECCCcCCCCHhhHhhcCCcccccccc
Confidence            477788899999999999876 5799999999999999999988766 7889999999999998887766543 222222


Q ss_pred             C--CCCeeeecCCCCcCCCCCCC----H--H--HHHHHHH-HHHhcc-CCCCeeEEEecccCCCCCeeeCCchhHHHHHH
Q 011777          212 P--QGEIHHVVNPDPYHGSFGSD----A--A--RYAQDLQ-DHIDFG-TSGKVAGFIAETIQGVGGAVELAPGYLKLVYD  279 (477)
Q Consensus       212 ~--~~~~~~~~~~~~~~~~~~~~----~--~--~~~~~le-~~i~~~-~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~  279 (477)
                      .  ..++..++.++.++.+++.+    +  .  ..+++|+ ++++.. .++++++|++||+|+++|.++++++++++|++
T Consensus       161 ~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~  240 (419)
T 2eo5_A          161 GPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQK  240 (419)
T ss_dssp             CCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHH
T ss_pred             CCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHH
Confidence            1  13566777666666555421    0  1  2357788 777632 11478999999999999988999999999999


Q ss_pred             HHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcccccccCCCCcHHHH
Q 011777          280 IVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCS  358 (477)
Q Consensus       280 l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~  358 (477)
                      +|++||++||+||+|+|||++| ..++++++++.||++||||++++| +|+||++++++++ .+ ...+.+||++|++++
T Consensus       241 l~~~~~~~li~DE~~~~~g~~g-~~~~~~~~~~~~d~~t~sK~~~~G~~riG~~~~~~~~~-~~-~~~~~~t~~~n~~~~  317 (419)
T 2eo5_A          241 LAKKYGILLVDDEVQMGLGRTG-KLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD-FK-PGMHSNTFGGNALAC  317 (419)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEEEGGGC-CC-------CCCCCHHHH
T ss_pred             HHHHcCCEEEEeccccCCccCc-chhhHHhcCCCCCEEEecccccCCccceEEEEEchHhh-cC-CcccCCCCCCCHHHH
Confidence            9999999999999999999998 666778889999999999999999 9999999999987 66 446678999999999


Q ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCc
Q 011777          359 AGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGV  438 (477)
Q Consensus       359 aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv  438 (477)
                      +|+.++|+.+++  +.++++++++++.++|.++      +..+++.|+|+++++..       ...... +.+.|+++||
T Consensus       318 ~aa~aal~~~~~--~~~~~~~~~~~l~~~L~~~------~~~~~~~g~~~~i~~~~-------~~~~~~-~~~~l~~~Gv  381 (419)
T 2eo5_A          318 AIGSKVIDIVKD--LLPHVNEIGKIFAEELQGL------ADDVRGIGLAWGLEYNE-------KKVRDR-IIGESFKRGL  381 (419)
T ss_dssp             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTS------SSEEEEETTEEEEECSC-------HHHHHH-HHHHHHHTTE
T ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh------hhheEeeeEEEEEEEec-------CccHHH-HHHHHHHCCC
Confidence            999999997654  7888889999888888654      45678889999987731       112245 8888999999


Q ss_pred             eeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          439 LVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       439 ~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      ++.+++  .+++||+|++.+|++++++++++|+++++++
T Consensus       382 ~v~~~~--~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~  418 (419)
T 2eo5_A          382 LLLPAG--RSAIRVIPPLVISEEEAKQGLDILKKVIKVV  418 (419)
T ss_dssp             ECEEET--TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             EEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            999875  6799999999999999999999999988753

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=100.00  E-value=9.4e-55  Score=448.57  Aligned_cols=403  Identities=22%  Similarity=0.266  Sum_probs=307.6

Q ss_pred             CCCHHHHHHHHhhhcCCCcc----ccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc
Q 011777           54 GPSADQVFQKRKQFLGPSIF----HYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ  129 (477)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~----~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~  129 (477)
                      .|++++++++.+++++.+..    .+.+.|+.+++|+|+++||.||++||||.++++++++||+||+|++|+.+++++..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~   90 (453)
T 2cy8_A           11 TEGSVFWAQRARSVMPDGVTADTRAFDPHGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGV   90 (453)
T ss_dssp             CHHHHHHHHHHHHHSCCC------CCSSCCCCEEEEEBTEEEETTCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTC
T ss_pred             CchhHHHHHHHHhhcCCCCCccccccCCCCceEEEeecCEEEECCCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhCC
Confidence            45788999999999976432    13356899999999999999999999999999999999999999999999998743


Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +  ..+.++...+++++|++.++ +.++|+|++||+||++.|+++||.++++++||+++++|||++..++..++. .+..
T Consensus        91 ~--~~~~~~~~~~la~~l~~~~~-~~~~v~~~~gg~eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~  166 (453)
T 2cy8_A           91 Q--YAASHPLEVRWAERIVAAFP-SIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNS-HFDG  166 (453)
T ss_dssp             S--SCSSCHHHHHHHHHHHHHCT-TCSEEEEESCHHHHHHHHHHHHHHHHCCCEEEEECC--------------------
T ss_pred             C--CCCCCHHHHHHHHHHHhhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCC-ccCC
Confidence            2  24678889999999999987 678999999999999999999988888899999999999998877664432 0000


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                      +.. .++.....+..+..+++ |    +++|+++++.. ++++++|++||+++++|.++++++|+++|+++|++||++||
T Consensus       167 ~~~-~g~~~~~~~~~~~~~~~-d----~~~le~~l~~~-~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI  239 (453)
T 2cy8_A          167 QPA-PGVLPETTANTLLIRPD-D----IEGMREVFANH-GSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFI  239 (453)
T ss_dssp             ----------CGGGEEEECTT-C----HHHHHHHHHHH-GGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEE
T ss_pred             CcC-CCCCccccCceeecCCC-C----HHHHHHHHHhc-CCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence            000 11110000001111222 2    57888888632 24789999999998889889999999999999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcc-----cccccCCCCcHHHHHHHHHH
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQ-----KIQFNTFGGNPVCSAGGLAV  364 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~-----~~~~~t~~~~~~~~aaa~a~  364 (477)
                      +||+|+|| ++| ..+.++.+++.||++||||++++|+|+|++++++++++.+..     ..+++||++|+++++++.++
T Consensus       240 ~DEv~~g~-~~g-~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aa  317 (453)
T 2cy8_A          240 LDEVISGF-RVG-NHGMQALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAA  317 (453)
T ss_dssp             EECTTTTT-TTC-TTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHH
T ss_pred             EecCcccc-ccC-chhhhHHhCCCCcEEEEChhhhCCcceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHH
Confidence            99999999 888 667778889999999999999999999999999999988865     13667999999999999999


Q ss_pred             HHh-hchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEee-----C------CCCCCccHHHHHHHHHH
Q 011777          365 LRV-IDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVT-----D------RKEKTPAKAETAVLFEK  432 (477)
Q Consensus       365 l~~-l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~-----~------~~~~~~~~~~~~~~~~~  432 (477)
                      |+. + .+++.+++++++++++++|+++..+++.+..+++.|+|+++++..     +      ...+.++.....++.+.
T Consensus       318 l~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  396 (453)
T 2cy8_A          318 IDTIL-EDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMA  396 (453)
T ss_dssp             HHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHH
T ss_pred             HHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHH
Confidence            998 7 778999999999999999999876777767789999999999853     1      00111223345678889


Q ss_pred             HHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          433 LRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       433 l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      |+++||++.++    +.+|  +++.++++++++++++|++++++
T Consensus       397 l~~~Gv~v~~~----~~~~--l~~~~t~~~i~~~l~~l~~~l~~  434 (453)
T 2cy8_A          397 LILEGVDIGGR----GSVF--LSAQHEREHVEHLVTTFDRVLDR  434 (453)
T ss_dssp             HHHTTEECBTT----TEEE--CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCeEEeCC----CCEE--eeccCCHHHHHHHHHHHHHHHHH
Confidence            99999999653    2344  57999999999999999998764

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=100.00  E-value=1.5e-52  Score=428.23  Aligned_cols=415  Identities=30%  Similarity=0.484  Sum_probs=334.8

Q ss_pred             CHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccc-cc
Q 011777           56 SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT-TI  134 (477)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~-~~  134 (477)
                      ++++++++..++++.+....  .|+++++++|+++||.+|++||||.++.+++++||++|+|++++.+++++..+.. ..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~d~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~   80 (426)
T 1sff_A            3 SNKELMQRRSQAIPRGVGQI--HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQV   80 (426)
T ss_dssp             CHHHHHHHHHHHSCTTBCCS--EEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTT
T ss_pred             hHHHHHHHHHHhcCcccccc--CCceEEecccCEEEeCCCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccc
Confidence            57788998888887654332  4889999999999999999999999999999999999999999999987654322 23


Q ss_pred             cCChHHHHHHHHHHhhCCCCC-CEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCC-CCCCCCC
Q 011777          135 YLHHAIADFAEALASKMPGNL-KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALN-TWKYPIP  212 (477)
Q Consensus       135 ~~~~~~~~l~~~La~~~~~~~-~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~-~~~~~~~  212 (477)
                      +..+...+|+++|+++++.+. ++|+|++||+||++.++++++.++++++||+++++|||.....+...+.. .++....
T Consensus        81 ~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~  160 (426)
T 1sff_A           81 LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMG  160 (426)
T ss_dssp             EECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSC
T ss_pred             cCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCchHhhhhcCCccccccccC
Confidence            557788999999999995434 78999999999999999988777777799999999999987666554432 1221111


Q ss_pred             C--CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc-CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          213 Q--GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG-TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       213 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~-~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                      +  .++..++.+..+++   .+....+++|+++++.. +++++++|+++|+++++|.+.++++++++|.++|++||++||
T Consensus       161 ~~~~~v~~v~~~~~~~~---~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li  237 (426)
T 1sff_A          161 LMPGHVYRALYPCPLHG---ISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLI  237 (426)
T ss_dssp             CCCSSEEEECCCBGGGT---BCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEE
T ss_pred             CCCCCcEEeCCCccccc---cchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence            1  23444544322211   11222367888887631 124789999999888888889999999999999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID  369 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~  369 (477)
                      +||+|+||+++| .+++++.+++.||+++|||++++|+|+|++++++++++.+....+..|++.|+++++++.++|+.++
T Consensus       238 ~De~~~~~~~~g-~~~~~~~~~~~~di~s~sK~~~~GlriG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~  316 (426)
T 1sff_A          238 ADEVQSGAGRTG-TLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFE  316 (426)
T ss_dssp             EECTTTTTTTTS-SSSGGGGTTSCCSEEEECGGGGTSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH
T ss_pred             EechhhccCccc-chhhhhhcCCCCCEEEEcccccCCCceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHH
Confidence            999999999998 6677788888999999999999999999999999999888765677899999999999999999887


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCE
Q 011777          370 KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNV  449 (477)
Q Consensus       370 ~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~  449 (477)
                      ++++.+++++++++++++|+++...++.+..+++.|+++++++......+.|......++.+.|+++||++.++..+.++
T Consensus       317 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~  396 (426)
T 1sff_A          317 QENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNV  396 (426)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCE
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCCCCE
Confidence            77889999999999999999886556766677788999999985422122233445667889999999999998656789


Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          450 FRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       450 iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +||++++.++++++++++++|++++++
T Consensus       397 iRi~~~~~~~~~~i~~~~~~l~~~l~~  423 (426)
T 1sff_A          397 LRILVPLTIEDAQIRQGLEIISQCFDE  423 (426)
T ss_dssp             EEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCccCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998864

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=100.00  E-value=1.4e-52  Score=429.30  Aligned_cols=382  Identities=26%  Similarity=0.391  Sum_probs=311.0

Q ss_pred             Ccee-EEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccc-ccccCChHHHHHHHHHHhhCCCCC
Q 011777           78 KPLN-IVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA-TTIYLHHAIADFAEALASKMPGNL  155 (477)
Q Consensus        78 ~p~~-~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~-~~~~~~~~~~~l~~~La~~~~~~~  155 (477)
                      .|+. +.+++|+++||.||++|||+.++.+++++||+||+|++|+.+++++..+. ...|.++...+++++|+++++.+.
T Consensus        24 ~~~~~~~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~  103 (429)
T 1s0a_A           24 LPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPL  103 (429)
T ss_dssp             CCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTC
T ss_pred             CCceeEEeeeeeEEEeCCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCC
Confidence            4655 89999999999999999999999999999999999999999999875432 224667778999999999998778


Q ss_pred             CEEEEeCChHHHHHHHHHHHHhccC-----CceEEEEccCccCCcccccccccCCC-CCCCCC--CCCeeeecCCCCcC-
Q 011777          156 KVVYFVNSGTEANELAMLMARLSTG-----NLGMIALRNAYHGGSSGTIGLTALNT-WKYPIP--QGEIHHVVNPDPYH-  226 (477)
Q Consensus       156 ~~v~~~~sGseA~~~Al~~ar~~~~-----~~~ii~~~~~yhG~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~-  226 (477)
                      ++|+|++||+||++.|+++++.+++     +++||+++++|||++..++..++... ++....  ..++..++.+.... 
T Consensus       104 ~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (429)
T 1s0a_A          104 ECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMD  183 (429)
T ss_dssp             CEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-
T ss_pred             CEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCccccc
Confidence            8999999999999999998876544     78999999999999887766654221 111111  12455555443211 


Q ss_pred             CCCCCCHHHHHHHHHHHHhccCCCCeeEEEeccc-CCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCc
Q 011777          227 GSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW  305 (477)
Q Consensus       227 ~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi-~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~  305 (477)
                      ..++.   ..+++|+++++.. ++++++|++||+ +|++|.++++++++++|.++|++||++||+||+|+|||++| ..+
T Consensus       184 ~~~~~---~d~~~l~~~l~~~-~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g-~~~  258 (429)
T 1s0a_A          184 GEWDE---RDMVGFARLMAAH-RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG-KLF  258 (429)
T ss_dssp             CCCCG---GGGHHHHHHHHHH-TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSS
T ss_pred             ccchH---HHHHHHHHHHHhC-CCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccc-hHH
Confidence            11210   1147788887632 247899999999 99999999999999999999999999999999999999998 566


Q ss_pred             cccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhccc-----ccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHH
Q 011777          306 GFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCAD  379 (477)
Q Consensus       306 ~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~-----~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~  379 (477)
                      +++..++.||++||||++++| +|+|++++++++++.+...     .+.+|+++|+++++++.++|+.++++++.+++++
T Consensus       259 ~~~~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~~~~~~~~  338 (429)
T 1s0a_A          259 ACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVAD  338 (429)
T ss_dssp             GGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HhhhcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            778889999999999999999 9999999999998887653     2567999999999999999998877788899999


Q ss_pred             HHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCc
Q 011777          380 VGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFT  459 (477)
Q Consensus       380 ~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t  459 (477)
                      ++++++++|+++.. ++.+..+++.|+++++++...        .....+.+.|+++||++.+.   ++++||+|++.+|
T Consensus       339 ~~~~l~~~L~~l~~-~~~~~~~~~~g~~~~~~~~~~--------~~~~~l~~~l~~~Gi~v~~~---~~~iRis~~~~~t  406 (429)
T 1s0a_A          339 IEVQLREQLAPARD-AEMVADVRVLGAIGVVETTHP--------VNMAALQKFFVEQGVWIRPF---GKLIYLMPPYIIL  406 (429)
T ss_dssp             HHHHHHHHHGGGGG-CTTEEEEEEETTEEEEEESSC--------BCHHHHHHHHHHTTEECCCB---TTEEEECCCTTCC
T ss_pred             HHHHHHHHHHHHhc-CCCEEEEEEeeEEEEEEECCc--------ccHHHHHHHHHHCCCEEecc---CCEEEEECCCCCC
Confidence            99999999987642 555666788899999987421        01346788888999999874   4799999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 011777          460 KDDADFLVDALDYSMSK  476 (477)
Q Consensus       460 ~e~i~~~l~~l~~~l~~  476 (477)
                      ++|+++++++|++++++
T Consensus       407 ~e~i~~~~~~l~~~~~~  423 (429)
T 1s0a_A          407 PQQLQRLTAAVNRAVQD  423 (429)
T ss_dssp             HHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998754

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=100.00  E-value=1.1e-52  Score=424.58  Aligned_cols=380  Identities=27%  Similarity=0.515  Sum_probs=323.1

Q ss_pred             HHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCCh
Q 011777           59 QVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH  138 (477)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~  138 (477)
                      +++++.++++...   +...|+++++|+|+++||.||++||||.++++++++||+||+|.+++.+++++..+....+..+
T Consensus         2 ~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~   78 (392)
T 3ruy_A            2 DIIELTDTYGANN---YHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSD   78 (392)
T ss_dssp             CHHHHHHHHBCTT---CCCCSCEECEEEBTEEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSEET
T ss_pred             hHHHHHHhhhhcc---CCCCCceEEeeeeCEEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccccCCH
Confidence            3566677777543   3456899999999999999999999999999999999999999999999998876655556778


Q ss_pred             HHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc--------cCCceEEEEccCccCCcccccccccCCCCCCC
Q 011777          139 AIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS--------TGNLGMIALRNAYHGGSSGTIGLTALNTWKYP  210 (477)
Q Consensus       139 ~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~--------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  210 (477)
                      ...+++++|+++++  .++++|++||++|++.|+++++..        +++++||++.++|||.+..++..++...+...
T Consensus        79 ~~~~l~~~la~~~g--~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~  156 (392)
T 3ruy_A           79 QLGPWYEKVAKLTN--KEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRG  156 (392)
T ss_dssp             THHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTT
T ss_pred             HHHHHHHHHHHhcC--CCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccc
Confidence            89999999999985  579999999999999999998876        56789999999999999888887765444332


Q ss_pred             CCC--CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEE
Q 011777          211 IPQ--GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVC  288 (477)
Q Consensus       211 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill  288 (477)
                      ..+  .++..++        ++ |    +++|+++++    +++++|+++|++|++|.+.++++|+++|.++|++||++|
T Consensus       157 ~~~~~~~~~~~~--------~~-d----~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~l  219 (392)
T 3ruy_A          157 FGPMLPGIIVIP--------YG-D----LEALKAAIT----PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLF  219 (392)
T ss_dssp             CCSCCSSEEEEC--------TT-C----HHHHHHHCC----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEE
T ss_pred             cCCCCCCCeeeC--------cc-c----HHHHHHHhc----cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence            221  1222222        11 1    578888876    579999999999999999989999999999999999999


Q ss_pred             EEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHh
Q 011777          289 IADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRV  367 (477)
Q Consensus       289 I~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~  367 (477)
                      |+||+|+||+++| ..+..+.+++.||++||||+++|| +|+|++++++++++.+....+.++|+.|+++++++.++|+.
T Consensus       220 i~De~~~~~~~~g-~~~~~~~~~~~~d~~~~SK~l~gG~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  298 (392)
T 3ruy_A          220 VADEIQTGLGRTG-KVFACDWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEV  298 (392)
T ss_dssp             EEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHH
T ss_pred             EEeechhCCCccc-cchhhhccCCCCCEEEEchhhhCChhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999 677788889999999999999999 99999999999999888777888999999999999999998


Q ss_pred             hchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCC
Q 011777          368 IDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHG  447 (477)
Q Consensus       368 l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~  447 (477)
                      ++.+++.++++++.+++++.|+++  ..+.+..+++.|.++++.+..          ...++.+.|+++||++.+++  .
T Consensus       299 ~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~g~~~~~~~~~----------~~~~l~~~l~~~gi~v~~~~--~  364 (392)
T 3ruy_A          299 LEEEKLTERSLQLGEKLVGQLKEI--DNPMITEVRGKGLFIGIELNE----------PARPYCEQLKAAGLLCKETH--E  364 (392)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHTTC--CCTTEEEEEEETTEEEEEESS----------CSHHHHHHHHTTTEECCCBT--T
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHh--cCCCceEEEeeeeEEEEEEcc----------hHHHHHHHHHHCCcEEecCC--C
Confidence            877888999999999999988765  235567778889999988632          13568889999999999875  6


Q ss_pred             CEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          448 NVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       448 ~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      +++||+|++.++++|+++++++|+++++
T Consensus       365 ~~iRi~~~~~~~~~~i~~~~~~l~~~l~  392 (392)
T 3ruy_A          365 NVIRIAPPLVISEEDLEWAFQKIKAVLS  392 (392)
T ss_dssp             TEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence            8999999999999999999999998863

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=100.00  E-value=3.8e-52  Score=422.48  Aligned_cols=373  Identities=31%  Similarity=0.503  Sum_probs=321.0

Q ss_pred             ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCC
Q 011777           76 YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNL  155 (477)
Q Consensus        76 ~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~  155 (477)
                      ...|+++++|+|+++||.+|++||||.++.+++++||+||+|.+++.+++++..+....+.++...+++++|+++++.  
T Consensus        19 ~~~~~~~~~~~g~~~~~~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~--   96 (406)
T 4adb_A           19 APAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFA--   96 (406)
T ss_dssp             CCCSSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHSSC--
T ss_pred             CCCCceEEeeccCEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhCCC--
Confidence            345899999999999999999999999999999999999999999999998866555556778899999999999954  


Q ss_pred             CEEEEeCChHHHHHHHHHHHHhc------cCCceEEEEccCccCCcccccccccCCCCCCCCCC--CCeeeecCCCCcCC
Q 011777          156 KVVYFVNSGTEANELAMLMARLS------TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ--GEIHHVVNPDPYHG  227 (477)
Q Consensus       156 ~~v~~~~sGseA~~~Al~~ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  227 (477)
                      ++++|++||++|++.|+++++.+      +++++||+++++||+....+...++...+.....+  .++..++.++    
T Consensus        97 ~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----  172 (406)
T 4adb_A           97 DRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYND----  172 (406)
T ss_dssp             SEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTC----
T ss_pred             CeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCc----
Confidence            69999999999999999988765      67789999999999998888777765443322221  2343333221    


Q ss_pred             CCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc
Q 011777          228 SFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF  307 (477)
Q Consensus       228 ~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~  307 (477)
                               +++|+++++    +++++|+++|++++||+++++++++++|.++|++||++||+||+|+||+++| ..+++
T Consensus       173 ---------~~~l~~~l~----~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g-~~~~~  238 (406)
T 4adb_A          173 ---------INSASALID----DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTG-ELYAY  238 (406)
T ss_dssp             ---------HHHHHTTCS----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS-SSSHH
T ss_pred             ---------HHHHHHHhc----CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc-hhHHH
Confidence                     577877775    5789999999999999888899999999999999999999999999999999 67777


Q ss_pred             cccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Q 011777          308 ETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGR  387 (477)
Q Consensus       308 ~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~  387 (477)
                      +.+++.||++||||++++|+|+|++++++++++.+....+.++++.|+++++++.++|+.++++++.++++++++++++.
T Consensus       239 ~~~~~~~d~~t~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~  318 (406)
T 4adb_A          239 MHYGVTPDLLTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVER  318 (406)
T ss_dssp             HHHTCCCSEEEECGGGGTTSCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCCEEEechhhcCCCCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999998877788899999999999999999887788999999999999999


Q ss_pred             HHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHH
Q 011777          388 LRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLV  467 (477)
Q Consensus       388 L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l  467 (477)
                      |+++...++.+.++++.|+++++++..+.      .....++.+.|+++||++.+++  .+++||+|++.++++|+++++
T Consensus       319 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~l~~~gi~v~~~~--~~~iRi~~~~~~~~e~i~~~~  390 (406)
T 4adb_A          319 LNTINHRYGLFSEVRGLGLLIGCVLNADY------AGQAKQISQEAAKAGVMVLIAG--GNVVRFAPALNVSEEEVTTGL  390 (406)
T ss_dssp             HHHHHHHHCCEEEEEEETTEEEEEECTTT------TTCHHHHHHHHHHTTEECEESS--TTEEEECCCTTCCHHHHHHHH
T ss_pred             HHHHHHhCCCceEEEEEEEEEEEEEeCCc------HHHHHHHHHHHHHCCcEEeecC--CCeEEEECCCCCCHHHHHHHH
Confidence            99987666777888889999999985321      0124678899999999999875  689999999999999999999


Q ss_pred             HHHHHHHhh
Q 011777          468 DALDYSMSK  476 (477)
Q Consensus       468 ~~l~~~l~~  476 (477)
                      ++|++++++
T Consensus       391 ~~l~~~l~~  399 (406)
T 4adb_A          391 DRFAAACEH  399 (406)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998864

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=100.00  E-value=6.2e-49  Score=397.98  Aligned_cols=371  Identities=30%  Similarity=0.539  Sum_probs=305.1

Q ss_pred             ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCC
Q 011777           76 YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNL  155 (477)
Q Consensus        76 ~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~  155 (477)
                      ...|+.+.+++|+++||.||++||||.++++++++||++|++.+++.+++++..+....|..+...+++++|+++++  .
T Consensus        20 ~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--~   97 (397)
T 2ord_A           20 SRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTF--G   97 (397)
T ss_dssp             CCCSCEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTTT--S
T ss_pred             cCCCceEEeeecCEEEECCCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHhcC--C
Confidence            35689999999999999999999999999999999999999999999999876543334556788999999999985  5


Q ss_pred             CEEEEeCChHHHHHHHHHHHHhc-----cCCceEEEEccCccCCcccccccccCCCCCCCC-C-CCCeeeecCCCCcCCC
Q 011777          156 KVVYFVNSGTEANELAMLMARLS-----TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI-P-QGEIHHVVNPDPYHGS  228 (477)
Q Consensus       156 ~~v~~~~sGseA~~~Al~~ar~~-----~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~  228 (477)
                      ++++|++||++|++.+++.++.+     +++++||+++++||+....++...+...++..+ + ..++..++.       
T Consensus        98 ~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------  170 (397)
T 2ord_A           98 GKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-------  170 (397)
T ss_dssp             CEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------
T ss_pred             CeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------
Confidence            79999999999999999988654     466789999999999887555444322111000 0 013333322       


Q ss_pred             CCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccc
Q 011777          229 FGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE  308 (477)
Q Consensus       229 ~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~  308 (477)
                       + |    +++|+++++    +++++|+++|+++++|.++++.+++++|.++|++||++||+||+|+||+++| ..+.++
T Consensus       171 -~-d----~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g-~~~~~~  239 (397)
T 2ord_A          171 -N-N----VEDLRRKMS----EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTG-KLFAYQ  239 (397)
T ss_dssp             -T-C----HHHHHHHCC----TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSHHH
T ss_pred             -C-C----HHHHHHHhh----cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCc-cchhhh
Confidence             1 1    578888775    4789999999999999878899999999999999999999999999999988 566666


Q ss_pred             ccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 011777          309 TQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRL  388 (477)
Q Consensus       309 ~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L  388 (477)
                      .+++.||+++|||++++|+|+|+++++++++ .+....+..+++.|+++++++.++|+.++++++.++++++++++++.|
T Consensus       240 ~~~~~~d~~s~sK~~~~G~r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L  318 (397)
T 2ord_A          240 KYGVVPDVLTTAKGLGGGVPIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKL  318 (397)
T ss_dssp             HHTCCCSEEEECGGGGTTSCCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHH
T ss_pred             hhCCCCCeeeeccccCCCcCeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            7788899999999999999999999999877 665545678899999999999999998877788999999999999999


Q ss_pred             HHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHH
Q 011777          389 RTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVD  468 (477)
Q Consensus       389 ~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~  468 (477)
                      +++...++.+..+++.|.++++++....        ...++.+.|+++||++.+++  .+++||+|++.++++|++++++
T Consensus       319 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~l~~~l~~~gi~v~~~~--~~~iRis~~~~~~~e~i~~~~~  388 (397)
T 2ord_A          319 QEMKEEYDVVADVRGMGLMIGIQFREEV--------SNREVATKCFENKLLVVPAG--NNTIRFLPPLTVEYGEIDLAVE  388 (397)
T ss_dssp             HHHHHHCTTEEEEEEETTEEEEEECTTS--------CHHHHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHHH
T ss_pred             HHHHHhCCceEEEEEEeEEEEEEECChH--------HHHHHHHHHHHCCCEEccCC--CCEEEEECCcCCCHHHHHHHHH
Confidence            8875456666667788999998874210        24568888999999999875  6799999999999999999999


Q ss_pred             HHHHHHhhC
Q 011777          469 ALDYSMSKL  477 (477)
Q Consensus       469 ~l~~~l~~l  477 (477)
                      +|+++++++
T Consensus       389 ~l~~~l~~~  397 (397)
T 2ord_A          389 TLKKVLQGI  397 (397)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHhhC
Confidence            999998753

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=100.00  E-value=6.6e-48  Score=390.07  Aligned_cols=386  Identities=32%  Similarity=0.541  Sum_probs=308.2

Q ss_pred             HHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCC
Q 011777           58 DQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH  137 (477)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~  137 (477)
                      +++.+..++|++.....+...|+.+.+++|+++||.+|+.||||.++.+++++||++|+|.+++.+++++..+....|..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~   86 (395)
T 1vef_A            7 EDWRALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPT   86 (395)
T ss_dssp             --CHHHHHHHHHHBCSCSCCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCC
T ss_pred             HHHHHHHHhhhhhcccccCCCCccEEecccCEEEeCCCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCccccCC
Confidence            45666667775411011334688999999999999999999999999998999999999999999999875543334567


Q ss_pred             hHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCC-CCC-CC
Q 011777          138 HAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYP-IPQ-GE  215 (477)
Q Consensus       138 ~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~-~~~-~~  215 (477)
                      +...+++++|+++++.+.+++++++||++|++.+++.++.++++++||+++++||+.....+...+....... .+. .+
T Consensus        87 ~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~  166 (395)
T 1vef_A           87 PMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEP  166 (395)
T ss_dssp             HHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSC
T ss_pred             HHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCC
Confidence            8899999999999976678999999999999999998765557788999999999987755544332211000 010 12


Q ss_pred             eeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc
Q 011777          216 IHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT  295 (477)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~  295 (477)
                      +..++.        . |    +++|+++++    +++++|+++|+++++|.+.++++++++|.++|++||++||+||+|+
T Consensus       167 ~~~~~~--------~-d----~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~  229 (395)
T 1vef_A          167 VEFIPY--------N-D----VEALKRAVD----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT  229 (395)
T ss_dssp             EEEECT--------T-C----HHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred             eeEeCC--------C-c----HHHHHHHhc----cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence            222211        1 1    578888776    4689999999998899888999999999999999999999999999


Q ss_pred             CccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHH
Q 011777          296 GFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQA  375 (477)
Q Consensus       296 gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~  375 (477)
                      ||++.| ..+.++..++.+|+++|||.+++|+|+|++++++++++.+....+.++++.|+++++++.++++.+.++++.+
T Consensus       230 ~~~~~g-~~~~~~~~~~~~d~~s~sK~~~~g~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~  308 (395)
T 1vef_A          230 GMGRTG-KRFAFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWE  308 (395)
T ss_dssp             TTTTTS-SSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHH
T ss_pred             CCccCC-chhHhhhcCCCCCEEEEcccccCCCceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence            999888 5666677788899999999999999999999999998888765567889999999999999999887667888


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCCCCEEEEeC
Q 011777          376 HCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLHGNVFRIKP  454 (477)
Q Consensus       376 ~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~iRi~p  454 (477)
                      +++++.++++++|+++.  .+.+..+++.|.++++++..+          ..++.+.|+ ++||.+.+++  .+++||++
T Consensus       309 ~~~~~~~~l~~~l~~~~--~~~~~~~~~~g~~~~~~~~~~----------~~~l~~~l~~~~gi~v~~~~--~~~iRi~~  374 (395)
T 1vef_A          309 RAAELGPWFMEKLRAIP--SPKIREVRGMGLMVGLELKEK----------AAPYIARLEKEHRVLALQAG--PTVIRFLP  374 (395)
T ss_dssp             HHHHHHHHHHHHHHTSC--CTTEEEEEEETTEEEEEESSC----------SHHHHHHHHHHHCEECEESS--TTEEEECC
T ss_pred             HHHHHHHHHHHHHHHhh--cCceEEEEEEEEEEEEEEcCh----------HHHHHHHHHHHCCeEEecCC--CCEEEEeC
Confidence            89999999988887652  233445677888999987321          346788888 8999999864  68999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHh
Q 011777          455 PMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       455 ~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      ++.++++++++++++|+++++
T Consensus       375 ~~~~~~~~i~~~~~~l~~~l~  395 (395)
T 1vef_A          375 PLVIEKEDLERVVEAVRAVLA  395 (395)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHhC
Confidence            999999999999999998763

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=100.00  E-value=1.6e-45  Score=369.78  Aligned_cols=360  Identities=32%  Similarity=0.551  Sum_probs=292.0

Q ss_pred             cCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCC
Q 011777           77 QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLK  156 (477)
Q Consensus        77 ~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~  156 (477)
                      ..|+.+.+|+|.++||.+|+.||||.++.+.+++||.+|++.+++.+++++..+....|..+...+++++|+++++.. +
T Consensus         9 ~~~~~~~~~~g~~~~~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~~g~~-~   87 (375)
T 2eh6_A            9 RLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWTE-G   87 (375)
T ss_dssp             CEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTBCCHHHHHHHHHHHHTSSSC-E
T ss_pred             CCCccEEeeecCEEEeCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHhhcCCC-C
Confidence            468899999999999999999999999998889999999999999999987543333466677889999999998652 8


Q ss_pred             EEEEeCChHHHHHHHHHHHHhcc-----CCceEEEEccCccCCcccccccccCCCCCCCCC--CCCeeeecCCCCcCCCC
Q 011777          157 VVYFVNSGTEANELAMLMARLST-----GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP--QGEIHHVVNPDPYHGSF  229 (477)
Q Consensus       157 ~v~~~~sGseA~~~Al~~ar~~~-----~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  229 (477)
                      ++++++||++|++.++++++.++     |+++|++.+++||++........+...+.....  ..++..++.+       
T Consensus        88 ~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  160 (375)
T 2eh6_A           88 KVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLN-------  160 (375)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTT-------
T ss_pred             eEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCc-------
Confidence            99999999999999999765443     558999999999999877666544332211110  1233333211       


Q ss_pred             CCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccc
Q 011777          230 GSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET  309 (477)
Q Consensus       230 ~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~  309 (477)
                        |    +++|+++++    +++++|+++|+++++|.+.++++++++|.++|++||+++|+||+|++|++++ ..+.++.
T Consensus       161 --d----~~~l~~~l~----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~  229 (375)
T 2eh6_A          161 --D----IDSVYKLLD----EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTG-EFYAYQH  229 (375)
T ss_dssp             --C----HHHHHTTCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSGGGG
T ss_pred             --h----HHHHHHHhc----CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC-cchhhhh
Confidence              1    477777665    4789999999999999888999999999999999999999999999999887 4556677


Q ss_pred             cCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 011777          310 QGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLR  389 (477)
Q Consensus       310 ~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~  389 (477)
                      ++..+|+++|||.+++|+|+|++++++++++.+....+..+++.|+++++++.++|+.++  ++.++++++++++.+.|+
T Consensus       230 ~~~~~d~~s~SK~~~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~  307 (375)
T 2eh6_A          230 FNLKPDVIALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKLK  307 (375)
T ss_dssp             GTCCCSEEEECGGGGTTSCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEcccccCCCCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            788899999999999999999999999998888765567888999999999999998765  677888888888888887


Q ss_pred             HHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHH
Q 011777          390 TLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDA  469 (477)
Q Consensus       390 ~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~  469 (477)
                      ++    +. ..+++.|.++++++..+          ..++.+.|+++||.+.+++  .+++||++++.++++++++++++
T Consensus       308 ~~----~~-~~~~~~g~~~~~~~~~~----------~~~~~~~l~~~gi~~~~~~--~~~iRi~~~~~~~~~~i~~~~~~  370 (375)
T 2eh6_A          308 EL----GK-GKVKGRGLMLGLELERE----------CKDYVLKALEKGLLINCTA--GKVLRFLPPLIIQKEHIDRAISV  370 (375)
T ss_dssp             HT----TS-SEEEEETTEEEEECSSC----------CHHHHHHHHHTTEECEEET--TTEEEECCCTTCCHHHHHHHHHH
T ss_pred             HH----hc-CCceEEEEEEEEEEcCc----------HHHHHHHHHHCCCEEecCC--CCEEEEECCCCCCHHHHHHHHHH
Confidence            64    22 34567788988877321          2467888889999998864  67899999999999999999999


Q ss_pred             HHHHH
Q 011777          470 LDYSM  474 (477)
Q Consensus       470 l~~~l  474 (477)
                      |++++
T Consensus       371 l~~~l  375 (375)
T 2eh6_A          371 LREIL  375 (375)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            98764

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=100.00  E-value=2e-40  Score=338.38  Aligned_cols=360  Identities=12%  Similarity=0.075  Sum_probs=264.1

Q ss_pred             CceeEEeeeccEEEeCC--CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCC--C
Q 011777           78 KPLNIVEGKMQYLFDEN--GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMP--G  153 (477)
Q Consensus        78 ~p~~~~~g~G~~~~d~d--G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~--~  153 (477)
                      .+++..+|+|+++||.+  |+.||||..+.  . ..+++|+|++|+.++++...+.......+...++++++++.++  .
T Consensus        41 ~~~~~~~g~g~~~~d~~~~g~~~i~~~~~~--~-~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~g~~~  117 (421)
T 3l8a_A           41 TTRPDRLNQFTYKWKTSENNPELLQMWVAD--M-DFLPVPEIKEAIINYGREHIFGYNYFNDDLYQAVIDWERKEHDYAV  117 (421)
T ss_dssp             SCCCCCTTTTBTTTGGGTTCTTCEECCSSC--C-CSCCCHHHHHHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHHCCCC
T ss_pred             CcccccCCCCCccccccCCCCCeeecccCC--C-CCCCCHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhCCCC
Confidence            45777899999999999  89999997663  3 3358999999999999875443333345667888888888765  4


Q ss_pred             CCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCC-cCCCCCCC
Q 011777          154 NLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDP-YHGSFGSD  232 (477)
Q Consensus       154 ~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  232 (477)
                      +.++|+|++||+||++.|++.+..  ++++|+++.++||++.......+.             ..+.+|.. ....+..|
T Consensus       118 ~~~~v~~~~g~~ea~~~a~~~~~~--~gd~Vi~~~~~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~~d  182 (421)
T 3l8a_A          118 VKEDILFIDGVVPAISIALQAFSE--KGDAVLINSPVYYPFARTIRLNDH-------------RLVENSLQIINGRFEID  182 (421)
T ss_dssp             CGGGEEEESCHHHHHHHHHHHHSC--TEEEEEEEESCCHHHHHHHHHTTE-------------EEEEEECEEETTEEECC
T ss_pred             CHHHEEEcCCHHHHHHHHHHHhcC--CCCEEEECCCCcHHHHHHHHHCCC-------------EEEeccccccCCCeeeC
Confidence            567899999999999999998743  557899999999997765544322             11111111 00001111


Q ss_pred             HHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-----
Q 011777          233 AARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-----  307 (477)
Q Consensus       233 ~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-----  307 (477)
                          +++|+++++.   +++++|++++++|++| +++++++|++|+++|++||++||+||+|++|+++|..+..+     
T Consensus       183 ----~~~le~~i~~---~~~~~vil~~p~nptG-~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~  254 (421)
T 3l8a_A          183 ----FEQLEKDIID---NNVKIYLLCSPHNPGG-RVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDA  254 (421)
T ss_dssp             ----HHHHHHHHHH---TTEEEEEEESSBTTTT-BCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCT
T ss_pred             ----HHHHHHHhhc---cCCeEEEECCCCCCCC-CcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCc
Confidence                5888888862   4788999999999999 67788899999999999999999999999999887322222     


Q ss_pred             cccCCCcceeeeccccc-CccceEEEEeC-HHHHHhhcccc-cccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHH
Q 011777          308 ETQGVIPDIVTMAKGIG-NGLPLGAVVTT-PEIANVMAQKI-QFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGS  382 (477)
Q Consensus       308 ~~~gv~pDivt~sK~lg-~G~pig~v~~~-~~~~~~~~~~~-~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~  382 (477)
                      +..+..+++.++||+++ +|+|+|+++++ +++++.+.... ..+++++|+++++++.++++..++  +++.++++++.+
T Consensus       255 ~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~  334 (421)
T 3l8a_A          255 SYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIK  334 (421)
T ss_dssp             TGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             hhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            22456677889999998 79999999998 89988887654 345668999999999999985322  334445555555


Q ss_pred             HHHHHHHHHHHhCCCceeeeccceeEE-EEEeeCCCCCCccHHHHHHHHHHHHH-cCceeeccCCC----CCEEEEeCCC
Q 011777          383 HLLGRLRTLQERHDIIGDVRGRGLMVG-MELVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGGLH----GNVFRIKPPM  456 (477)
Q Consensus       383 ~l~~~L~~l~~~~~~~~~v~g~g~~~~-i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~  456 (477)
                      ++++.|+++    +.+..+++.|.++. +++....       ....++.+.|++ +||++.++..+    .+++||+++ 
T Consensus       335 ~l~~~L~~~----~~i~~~~~~~~~~~~v~~~~~~-------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-  402 (421)
T 3l8a_A          335 LVIKELEAK----TKIKVMEPEGTYLVWLDFSAYA-------IAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA-  402 (421)
T ss_dssp             HHHHHHHHH----CSCEEECCSBSSEEEEECGGGT-------CCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC-
T ss_pred             HHHHHHHhC----CCceEeCCCeeEEEEEeccccC-------CCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec-
Confidence            555555443    55666777777665 7764311       012357778865 59999886432    489999877 


Q ss_pred             CCcHHHHHHHHHHHHHHHhh
Q 011777          457 CFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       457 ~~t~e~i~~~l~~l~~~l~~  476 (477)
                       +++++|++++++|++++++
T Consensus       403 -~~~~~i~~~l~~l~~~l~~  421 (421)
T 3l8a_A          403 -TPKNTVQEALSRIISVFGK  421 (421)
T ss_dssp             -SCHHHHHHHHHHHHHHC--
T ss_pred             -CCHHHHHHHHHHHHHHHhC
Confidence             6899999999999998753

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=100.00  E-value=6.3e-38  Score=320.45  Aligned_cols=368  Identities=15%  Similarity=0.109  Sum_probs=271.9

Q ss_pred             CCHHHHHHHHhhhcCCCccccccCceeEE-eeeccEEEeCCCCEEEeecCCcccccCC-CCCHHHHHHHHHHHhhccccc
Q 011777           55 PSADQVFQKRKQFLGPSIFHYYQKPLNIV-EGKMQYLFDENGRRYLDAFAGIVTVSCG-HCHPDVLNAIFEQSKLLQHAT  132 (477)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~G~~~~d~dG~~ylD~~~g~~~~~lG-h~~p~v~~Av~~~l~~~~~~~  132 (477)
                      ++++++.++..+....++.  ++.+..+. +++|+++|| ||++||||.+|.   ++| |+||+|++++.+++.+.....
T Consensus        25 ~~~~~~~~~~~~~~~~g~~--~r~~~~~~~~~~g~~~~~-~g~~~id~~~~~---~lg~~~~~~v~~a~~~~~~~~~~~~   98 (427)
T 2w8t_A           25 SKFDGLIAERQKLLDSGVT--DPFAIVMEQVKSPTEAVI-RGKDTILLGTYN---YMGMTFDPDVIAAGKEALEKFGSGT   98 (427)
T ss_dssp             GGGHHHHHHHHHHHHTTCC--CTTCCCCSEEEETTEEEE-TTEEEEECSCCC---TTCGGGCHHHHHHHHHHHHHHCSCC
T ss_pred             HHHHHHHHHHHHHHHcCCc--ceeeeeccccCCCceEee-CCceEEEEECcc---cccCCCCHHHHHHHHHHHHHhCCCC
Confidence            3567888877777665521  23345667 999999999 999999999884   488 689999999999998733211


Q ss_pred             c-----ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCC
Q 011777          133 T-----IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTW  207 (477)
Q Consensus       133 ~-----~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~  207 (477)
                      .     .+..+...+++++|+++++.  +.+++++||++|++.+++.+.  .+++.|++ ...+|+.........+    
T Consensus        99 ~~~~~~~G~~~~~~~l~~~la~~~g~--~~~i~~~sGs~a~~~al~~l~--~~gd~vl~-~~~~h~~~~~~~~~~g----  169 (427)
T 2w8t_A           99 CGSRMLNGTFHDHMEVEQALRDFYGT--TGAIVFSTGYMANLGIISTLA--GKGEYVIL-DADSHASIYDGCQQGN----  169 (427)
T ss_dssp             CSCTTTTCCCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHHS--CTTCEEEE-ETTCCHHHHHHHHHSC----
T ss_pred             cccccccCCcHHHHHHHHHHHHHhCC--CceEEecCcHHHHHHHHHHhc--CCCCEEEE-CCcccHHHHHHHHHcC----
Confidence            1     12457789999999999854  578899999999999988652  23444555 5555655443333322    


Q ss_pred             CCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcE
Q 011777          208 KYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGV  287 (477)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gil  287 (477)
                              ...+.++.      . |    +++|+++++....+++++|+++++++++|.+.+    +++|.++|++||++
T Consensus       170 --------~~~~~~~~------~-d----~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~~g~~  226 (427)
T 2w8t_A          170 --------AEIVRFRH------N-S----VEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKHGAM  226 (427)
T ss_dssp             --------SEEEEECT------T-C----HHHHHHHHHTSCSSSCEEEEEESEETTTTEECC----HHHHHHHHHHTTCE
T ss_pred             --------CeeEEeCC------C-C----HHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCE
Confidence                    22222221      1 1    588998887432227899999999999998876    99999999999999


Q ss_pred             EEEcCcccCc--cCCCCCCccccccCCCcc----eeeecccccCccceEEEEeCHHHHHhhcccc--cccCCCCcHHHHH
Q 011777          288 CIADEVQTGF--GRTGSHYWGFETQGVIPD----IVTMAKGIGNGLPLGAVVTTPEIANVMAQKI--QFNTFGGNPVCSA  359 (477)
Q Consensus       288 lI~DEv~~gf--gr~G~~~~~~~~~gv~pD----ivt~sK~lg~G~pig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~a  359 (477)
                      ||+||+|+++  +++| .. ..+.+++.+|    +.||||++|  ++.|++++++++++.+....  +..+++.|++.++
T Consensus       227 li~Dea~~~~~~~~~g-~~-~~~~~~~~~~~di~~~s~sK~~g--~~gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~a  302 (427)
T 2w8t_A          227 VLVDEAHSMGFFGPNG-RG-VYEAQGLEGQIDFVVGTFSKSVG--TVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVA  302 (427)
T ss_dssp             EEEECTTTTTTSSTTS-CC-HHHHTTCTTCCSEEEEESSSTTC--SCCEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHH
T ss_pred             EEEECCccccccCCCC-Cc-hHhhcCCCcCCcEEEecchhhhc--cCCCEEEeCHHHHHHHHHhcccccccCCCCHHHHH
Confidence            9999999975  3334 22 2345666665    668999997  45599999999988886542  3346678999999


Q ss_pred             HHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeec-cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcC
Q 011777          360 GGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRG-RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELG  437 (477)
Q Consensus       360 aa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~G  437 (477)
                      ++.++|+.++. +++.++++++++++++.|+++  .+...  ..+ .|.++++.+.        ......++.+.|+++|
T Consensus       303 a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~~~~~~~~~~~~~--------~~~~~~~l~~~L~~~G  370 (427)
T 2w8t_A          303 TATTSIRKLMTAHEKRERLWSNARALHGGLKAM--GFRLG--TETCDSAIVAVMLE--------DQEQAAMMWQALLDGG  370 (427)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH--TCEES--CSSCCSSEEEEEES--------SHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc--CCccc--CCCCCCCEEEEEEC--------CHHHHHHHHHHHHHCC
Confidence            99999998865 678899999999999999886  22211  133 6788888872        2334677899999999


Q ss_pred             ceeeccCCC-----CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          438 VLVGKGGLH-----GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       438 v~v~~~~~~-----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      |++.++..+     .+++||+++..++++|+++++++|++++++
T Consensus       371 i~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~  414 (427)
T 2w8t_A          371 LYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRA  414 (427)
T ss_dssp             EECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             eEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence            999886432     368999999999999999999999998764

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=100.00  E-value=1.8e-35  Score=298.75  Aligned_cols=350  Identities=16%  Similarity=0.157  Sum_probs=259.8

Q ss_pred             ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCC-CCCHHHHHHHHHHHhhcccccc-----ccCChHHHHHHHHHHh
Q 011777           76 YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCG-HCHPDVLNAIFEQSKLLQHATT-----IYLHHAIADFAEALAS  149 (477)
Q Consensus        76 ~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lG-h~~p~v~~Av~~~l~~~~~~~~-----~~~~~~~~~l~~~La~  149 (477)
                      ++.|..+++++|.|++| ||++||||.++   +++| |++|++.+++.+++.+..+...     .+..+...++++++++
T Consensus        24 ~~~~~~~~~~~g~~v~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~   99 (399)
T 3tqx_A           24 YKSERIITSPQNAEIKV-GEKEVLNFCAN---NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISE   99 (399)
T ss_dssp             CCCCCCBCSCSSSEEEE-TTEEEEECSSC---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHH
T ss_pred             ccccccccCCCCceEee-CCeeEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHH
Confidence            34567888999999999 99999999988   4688 7999999999999987433211     1245668899999999


Q ss_pred             hCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCC
Q 011777          150 KMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSF  229 (477)
Q Consensus       150 ~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (477)
                      +++.  +..++++||++|++.+++...  .+++.|++..++|++. .......+            ...+.+|.      
T Consensus       100 ~~~~--~~~i~~~sGt~a~~~~l~~~~--~~gd~v~~~~~~~~~~-~~~~~~~g------------~~~~~~~~------  156 (399)
T 3tqx_A          100 FLGT--DDTILYSSCFDANGGLFETLL--GPEDAIISDELNHASI-IDGIRLCK------------AQRYRYKN------  156 (399)
T ss_dssp             HHTC--SEEEEESCHHHHHHTTHHHHC--CTTCEEEEETTCCHHH-HHHHHSCC------------SEEEEECT------
T ss_pred             HHCC--CcEEEECchHHHHHHHHHHhc--CCCCEEEECCcccHHH-HHHHHHcC------------CceeEeCC------
Confidence            9865  456777889999999987653  2455666665555443 33322222            22222221      


Q ss_pred             CCCHHHHHHHHHHHHhccCC--CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-Cc-cCCCCCCc
Q 011777          230 GSDAARYAQDLQDHIDFGTS--GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GF-GRTGSHYW  305 (477)
Q Consensus       230 ~~~~~~~~~~le~~i~~~~~--~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gf-gr~G~~~~  305 (477)
                      . |    .++++++++....  .++++|+++++++++|.+.+    +++|.++|++||+++|+||+|. |+ +..+ . .
T Consensus       157 ~-d----~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~-~  225 (399)
T 3tqx_A          157 N-A----MGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENG-R-G  225 (399)
T ss_dssp             T-C----TTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTS-C-C
T ss_pred             C-C----HHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCC-C-c
Confidence            0 1    2567777763211  27899999999999998776    9999999999999999999994 54 4444 2 2


Q ss_pred             cccccCC--Cccee--eecccccCccceEEEEeCHHHHHhhccccc--ccCCCCcHHHHHHHHHHHHhh-c-hhhHHHHH
Q 011777          306 GFETQGV--IPDIV--TMAKGIGNGLPLGAVVTTPEIANVMAQKIQ--FNTFGGNPVCSAGGLAVLRVI-D-KERRQAHC  377 (477)
Q Consensus       306 ~~~~~gv--~pDiv--t~sK~lg~G~pig~v~~~~~~~~~~~~~~~--~~t~~~~~~~~aaa~a~l~~l-~-~~~~~~~~  377 (477)
                      ..+.+++  .+|++  ++||+++ |++.|++++++++++.+.....  ..+.+.+++.++++.++++.+ + .++..+++
T Consensus       226 ~~~~~~~~~~~di~~~s~sK~~~-g~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  304 (399)
T 3tqx_A          226 TPEYCGVADRVDILTGTLGKALG-GASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQL  304 (399)
T ss_dssp             HHHHHTCTTCCSEEEEESSSSSC-SSCCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             hHHhhCCCCCCcEEEecchHhcc-cCceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            3455665  67888  7999999 6778999999999988865422  234467899999999999877 3 25678888


Q ss_pred             HHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-----CCCEEEE
Q 011777          378 ADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-----HGNVFRI  452 (477)
Q Consensus       378 ~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi  452 (477)
                      +++.+++.+.|+++  ...   .+++.|.++++.+.        ......++.+.|+++||++.++..     ..+++||
T Consensus       305 ~~~~~~l~~~L~~~--g~~---~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi  371 (399)
T 3tqx_A          305 QENSRYFRAGMEKL--GFQ---LVPGNHPIIPVMLG--------DAQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRV  371 (399)
T ss_dssp             HHHHHHHHHHHHHH--TCC---BCCCSSSEEEEEEE--------CHHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEE
T ss_pred             HHHHHHHHHHHHHc--CCC---cCCCCCCEEEEEeC--------CHHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEE
Confidence            88999999988876  222   23667888888873        233467889999999999986532     2368999


Q ss_pred             eCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          453 KPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       453 ~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      +++..++++++++++++|+++++++
T Consensus       372 ~~~~~~~~~~i~~~~~~l~~~~~~~  396 (399)
T 3tqx_A          372 QMSAVHTQQQLDRAIEAFGQVGKKL  396 (399)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             EeecCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998753

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=100.00  E-value=4.2e-36  Score=302.61  Aligned_cols=360  Identities=11%  Similarity=0.033  Sum_probs=256.8

Q ss_pred             eeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCC--CCCCE
Q 011777           80 LNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMP--GNLKV  157 (477)
Q Consensus        80 ~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~--~~~~~  157 (477)
                      ++..+|+|+++||.+|++||||..+..  .+ +.+|+|.+++.+++.+..+.......+.+.++++++++.++  .+.++
T Consensus        11 ~~~~~~~g~~~~d~~g~~~i~~~~~~~--~~-~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~   87 (391)
T 3dzz_A           11 HVPKRQGNSIKWGVLKEKELPMWIAEM--DF-KIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDW   87 (391)
T ss_dssp             SCCCCCTTBTTTTTCCTTCEECCSSCC--SS-CCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGG
T ss_pred             hhccCCCCccceeccCCCceeccccCC--CC-CCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHH
Confidence            666789999999999999999997742  33 48999999999998864332222244567788888887754  45678


Q ss_pred             EEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCc-CCCCCCCHHHH
Q 011777          158 VYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPY-HGSFGSDAARY  236 (477)
Q Consensus       158 v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  236 (477)
                      |+|++||++|++.+++.+.  .+++.|++..++||+........+             ...+.+|... ...+..|    
T Consensus        88 i~~~~g~~~a~~~~~~~l~--~~gd~vl~~~~~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~~d----  148 (391)
T 3dzz_A           88 CVFASGVVPAISAMVRQFT--SPGDQILVQEPVYNMFYSVIEGNG-------------RRVISSDLIYENSKYSVN----  148 (391)
T ss_dssp             EEEESCHHHHHHHHHHHHS--CTTCEEEECSSCCHHHHHHHHHTT-------------CEEEECCCEEETTEEECC----
T ss_pred             EEECCCHHHHHHHHHHHhC--CCCCeEEECCCCcHHHHHHHHHcC-------------CEEEEeeeeecCCceeec----
Confidence            9999999999999999763  366889999999998766544332             2222222210 1111112    


Q ss_pred             HHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCC-Ccc
Q 011777          237 AQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV-IPD  315 (477)
Q Consensus       237 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv-~pD  315 (477)
                      +++++++++   ..++++|+++..++++|. .++++.+++|.++|++||+++|+||+|++|.+.|..+..+...+. .+|
T Consensus       149 ~~~l~~~l~---~~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d  224 (391)
T 3dzz_A          149 WADLEEKLA---TPSVRMMVFCNPHNPIGY-AWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKN  224 (391)
T ss_dssp             HHHHHHHHT---STTEEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGG
T ss_pred             HHHHHHHHh---ccCceEEEEECCCCCCCc-ccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccC
Confidence            588888886   246778877777888885 557788999999999999999999999999887733444443332 267


Q ss_pred             ----eeeeccccc-CccceEEEEeC-HHHHHhhcccc-cccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHH
Q 011777          316 ----IVTMAKGIG-NGLPLGAVVTT-PEIANVMAQKI-QFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLG  386 (477)
Q Consensus       316 ----ivt~sK~lg-~G~pig~v~~~-~~~~~~~~~~~-~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~  386 (477)
                          +.++||.+| +|+|+|+++++ +++++.+.... ..++++.|+++++++.++++..++  ++..++++++.+++.+
T Consensus       225 ~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~  304 (391)
T 3dzz_A          225 WVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYARE  304 (391)
T ss_dssp             GEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence                557899998 79999999997 88988876543 245678899999999999876321  3445555555666666


Q ss_pred             HHHHHHHhCCCceeeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCCcH
Q 011777          387 RLRTLQERHDIIGDVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCFTK  460 (477)
Q Consensus       387 ~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~  460 (477)
                      .|++.   .+.+....+. +.++++++....       ....++.+.|+ ++||.+.++..+    .+++||+++  +++
T Consensus       305 ~l~~~---~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~  372 (391)
T 3dzz_A          305 FLAKE---VPEVKVLDSNASYLAWVDISALG-------MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA--CPK  372 (391)
T ss_dssp             HHHHH---CTTSEECCCCBSSEEEEECGGGC-------SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC--SCH
T ss_pred             HHHhh---CCCcEEeccCceEEEEEehhhcC-------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCH
Confidence            55542   3333333444 444556663210       12457888885 899999987433    378999876  689


Q ss_pred             HHHHHHHHHHHHHHhhC
Q 011777          461 DDADFLVDALDYSMSKL  477 (477)
Q Consensus       461 e~i~~~l~~l~~~l~~l  477 (477)
                      +++++++++|+++++++
T Consensus       373 ~~i~~~l~~l~~~l~~~  389 (391)
T 3dzz_A          373 ELVIDGMQRLKQGVLNL  389 (391)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998753

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=100.00  E-value=5.2e-35  Score=295.95  Aligned_cols=351  Identities=15%  Similarity=0.162  Sum_probs=258.1

Q ss_pred             ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCC-CCHHHHHHHHHHHhhccccc--ccc---CChHHHHHHHHHHh
Q 011777           76 YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGH-CHPDVLNAIFEQSKLLQHAT--TIY---LHHAIADFAEALAS  149 (477)
Q Consensus        76 ~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~Av~~~l~~~~~~~--~~~---~~~~~~~l~~~La~  149 (477)
                      ++.|..+.+++|+|+||.||+.||||.++   +++|| ++|++.+++.++++...+..  ..|   ..+...+++++|++
T Consensus        25 ~~~~~~~~~~~g~~~~~~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~  101 (401)
T 1fc4_A           25 FKEERIITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAA  101 (401)
T ss_dssp             CCCCCCBCSCSSSEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHH
T ss_pred             eeeeeeeccCCCceEEeeCCccEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHH
Confidence            45678889999999999999999999988   35897 89999999999987643211  122   25678899999999


Q ss_pred             hCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCC
Q 011777          150 KMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSF  229 (477)
Q Consensus       150 ~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (477)
                      +++.+  ..+++++|++|++.+++.+.  .+++.|++.. .+|+.........            |...+.++.      
T Consensus       102 ~~g~~--~~i~~~sGs~a~~~~~~~~~--~~gd~v~~~~-~~~~~~~~~~~~~------------g~~~~~~~~------  158 (401)
T 1fc4_A          102 FLGME--DAILYSSCFDANGGLFETLL--GAEDAIISDA-LNHASIIDGVRLC------------KAKRYRYAN------  158 (401)
T ss_dssp             HHTCS--EEEEESCHHHHHHTTHHHHC--CTTCEEEEET-TCCHHHHHHHHTS------------CSEEEEECT------
T ss_pred             HhCCC--cEEEeCChHHHHHHHHHHHc--CCCCEEEEcc-hhHHHHHHHHHHc------------CCceEEECC------
Confidence            98654  56678889999999888653  2344555544 4554433322221            223333221      


Q ss_pred             CCCHHHHHHHHHHHHhccCC--CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-Ccc-CCCCCCc
Q 011777          230 GSDAARYAQDLQDHIDFGTS--GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GFG-RTGSHYW  305 (477)
Q Consensus       230 ~~~~~~~~~~le~~i~~~~~--~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gfg-r~G~~~~  305 (477)
                      . |    .++++++++....  .++++|+++++++++|.+.+    +++|.++|++||+++|+||+|. |+. ++| ..+
T Consensus       159 ~-d----~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g-~~~  228 (401)
T 1fc4_A          159 N-D----MQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENG-RGS  228 (401)
T ss_dssp             T-C----HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTS-CCH
T ss_pred             C-C----HHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCC-Ccc
Confidence            1 1    4778887763211  16789999999999997776    9999999999999999999995 884 556 332


Q ss_pred             cccccCCC--ccee--eecccccCccceEEEEeCHHHHHhhcccc--cccCCCCcHHHHHHHHHHHHhhch-hhHHHHHH
Q 011777          306 GFETQGVI--PDIV--TMAKGIGNGLPLGAVVTTPEIANVMAQKI--QFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCA  378 (477)
Q Consensus       306 ~~~~~gv~--pDiv--t~sK~lg~G~pig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~  378 (477)
                       .+..++.  .|++  ++||.++++. .|++++++++++.+....  +..+++.|+++++++.++|+.+++ +++.++++
T Consensus       229 -~~~~~~~~~~di~~~s~sK~~~~~~-gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  306 (401)
T 1fc4_A          229 -HEYCDVMGRVDIITGTLGKALGGAS-GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLW  306 (401)
T ss_dssp             -HHHTTCTTCCSEEEEESSSTTCSSS-CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             -HHHcCCCcCCcEEEecchhhccCCC-CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence             2334443  3776  7999996654 499999999988876533  334678899999999999988753 56788888


Q ss_pred             HHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC-----CCEEEEe
Q 011777          379 DVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH-----GNVFRIK  453 (477)
Q Consensus       379 ~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-----~~~iRi~  453 (477)
                      ++.+++.+.|+++  ....   .++.|.++++++.        ......++.+.|.++||++.++..+     .+++||+
T Consensus       307 ~~~~~l~~~L~~~--g~~~---~~~~~~~~~~~~~--------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~  373 (401)
T 1fc4_A          307 ANARQFREQMSAA--GFTL---AGADHAIIPVMLG--------DAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQ  373 (401)
T ss_dssp             HHHHHHHHHHHHT--TCCB---CCSSSSEEEEEEE--------CHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHc--CCcc---cCCCCCEEEEEcC--------ChHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEE
Confidence            8899998888775  2222   2467888888873        2234567889999999999886432     3589999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          454 PPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       454 p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      ++..++++++++++++|+++++++
T Consensus       374 ~~~~~~~~~i~~~~~~l~~~~~~~  397 (401)
T 1fc4_A          374 MSAAHTPEQITRAVEAFTRIGKQL  397 (401)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             eCCCCCHHHHHHHHHHHHHHHHHh
Confidence            998899999999999999998753

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=100.00  E-value=9.8e-36  Score=298.54  Aligned_cols=353  Identities=13%  Similarity=0.062  Sum_probs=247.7

Q ss_pred             eeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccc-ccccCChHHHHHHHHHHhhCC--CCCC
Q 011777           80 LNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA-TTIYLHHAIADFAEALASKMP--GNLK  156 (477)
Q Consensus        80 ~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~-~~~~~~~~~~~l~~~La~~~~--~~~~  156 (477)
                      +...+|+|+++||.||++||||.+|.  +.++ .+|+|.+++.+++....+. ...+ .+.+..+++.+.+..+  .+.+
T Consensus         7 ~~~~~~~g~~~~d~~g~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~-~~lr~~la~~~~~~~~~~~~~~   82 (377)
T 3fdb_A            7 IEDLRARNTMKWTRYGQGVLPLWVAE--SDFS-TCPAVLQAITDAVQREAFGYQPDG-SLLSQATAEFYADRYGYQARPE   82 (377)
T ss_dssp             HHHHHHTCCHHHHSSCTTSEECCSSC--CCSC-CCHHHHHHHHHHHHTTCCSSCCSS-CCHHHHHHHHHHHHHCCCCCGG
T ss_pred             HHHhcCCCCceeeccCCCeeeecccC--CCCC-CCHHHHHHHHHHHHcCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCHH
Confidence            33458999999999999999998875  3454 7999999999999863221 1122 5566667776665433  4567


Q ss_pred             EEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHH
Q 011777          157 VVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARY  236 (477)
Q Consensus       157 ~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (477)
                      +|++++||++|++.+++...  .+++.|++..++||++.......+.           .+..++....    .+      
T Consensus        83 ~i~~t~g~~~a~~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~g~-----------~~~~~~~~~~----~d------  139 (377)
T 3fdb_A           83 WIFPIPDVVRGLYIAIDHFT--PAQSKVIVPTPAYPPFFHLLSATQR-----------EGIFIDATGG----IN------  139 (377)
T ss_dssp             GEEEESCHHHHHHHHHHHHS--CTTCCEEEEESCCTHHHHHHHHHTC-----------CEEEEECTTS----CC------
T ss_pred             HEEEeCChHHHHHHHHHHhc--CCCCEEEEcCCCcHhHHHHHHHcCC-----------EEEEccCCCC----CC------
Confidence            89999999999999998763  3567899999999987655444322           1222222111    22      


Q ss_pred             HHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCC-CCCccc---cccCC
Q 011777          237 AQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTG-SHYWGF---ETQGV  312 (477)
Q Consensus       237 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G-~~~~~~---~~~gv  312 (477)
                      +++++++++.    ++++++++..+|++|. .++.+.+++|.++|++||+++|+||+|++|+++| .....+   +..+.
T Consensus       140 ~~~l~~~l~~----~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~  214 (377)
T 3fdb_A          140 LHDVEKGFQA----GARSILLCNPYNPLGM-VFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASV  214 (377)
T ss_dssp             HHHHHHHHHT----TCCEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHH
T ss_pred             HHHHHHHhcc----CCCEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCc
Confidence            5888888872    2444444444777775 5577889999999999999999999999998776 322222   22334


Q ss_pred             Ccceeeeccccc-CccceEEEEe-CHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHH
Q 011777          313 IPDIVTMAKGIG-NGLPLGAVVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRL  388 (477)
Q Consensus       313 ~pDivt~sK~lg-~G~pig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L  388 (477)
                      .+++.++||.+| +|+|+||+++ ++++++.+....+..+++.|+++++++.++|+..++  ++..++++++.+++.+.|
T Consensus       215 ~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L  294 (377)
T 3fdb_A          215 CITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEI  294 (377)
T ss_dssp             EEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            466778999997 6899998876 788988887766667889999999999999985422  334555555666666655


Q ss_pred             HHHHHhCCCceeeecccee-EEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccCCC----CCEEEEeCCCCCcHHH
Q 011777          389 RTLQERHDIIGDVRGRGLM-VGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGGLH----GNVFRIKPPMCFTKDD  462 (477)
Q Consensus       389 ~~l~~~~~~~~~v~g~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----~~~iRi~p~~~~t~e~  462 (477)
                      ++.   .+.+....+.+.+ +++++.....        ..++.+.|+++ ||++.++..+    .+++||+++  .++++
T Consensus       295 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~--~~~e~  361 (377)
T 3fdb_A          295 PKR---IPGAKITPMQATYLMWIDFRDTTI--------EGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFA--TSREV  361 (377)
T ss_dssp             HHH---STTCEECCCSBCSEEEEECTTSCC--------CSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC--SCHHH
T ss_pred             Hhh---CCCceEecCCeeEEEEEECcccCC--------CHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeC--CCHHH
Confidence            542   3334444445444 4676632111        02355666665 9999987533    479999876  48999


Q ss_pred             HHHHHHHHHHHHhhC
Q 011777          463 ADFLVDALDYSMSKL  477 (477)
Q Consensus       463 i~~~l~~l~~~l~~l  477 (477)
                      +++++++|+++++++
T Consensus       362 i~~~l~~l~~~l~~~  376 (377)
T 3fdb_A          362 LEEAIDRMAKAVSHH  376 (377)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999998753

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=100.00  E-value=4.6e-34  Score=288.01  Aligned_cols=359  Identities=10%  Similarity=0.002  Sum_probs=229.5

Q ss_pred             eEEeeeccEEEeCCCC-----EEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCCh-HHHHHHHHHHhhCC--
Q 011777           81 NIVEGKMQYLFDENGR-----RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH-AIADFAEALASKMP--  152 (477)
Q Consensus        81 ~~~~g~G~~~~d~dG~-----~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~-~~~~l~~~La~~~~--  152 (477)
                      +-.+|+|+++||.+|+     +||||..+..  .+| .+|+|.+++.++++...........+ .+.++++.+.+..+  
T Consensus         8 ~~~~~~~~~~~d~~~~~~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~~lr~~la~~l~~~~g~~   84 (390)
T 1d2f_A            8 VDRHGTWCTQWDYVADRFGTADLLPFTISDM--DFA-TAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTA   84 (390)
T ss_dssp             ----------------------CEECCSSSC--SSC-CCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCC
T ss_pred             ccccCCCccchhhhccccCCCCeeEeeecCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHhcCCC
Confidence            3468999999999998     7899976653  577 78999999999987532111111345 66677777766554  


Q ss_pred             CCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcC-CCCCC
Q 011777          153 GNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYH-GSFGS  231 (477)
Q Consensus       153 ~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  231 (477)
                      .+.++|++++||++|++.+++.+.  .++++|++..++||++.......+.             ..+.+|.... ..|..
T Consensus        85 ~~~~~v~~t~g~~~al~~~~~~l~--~~gd~vl~~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~~  149 (390)
T 1d2f_A           85 IDSQTVVYGPSVIYMVSELIRQWS--ETGEGVVIHTPAYDAFYKAIEGNQR-------------TVMPVALEKQADGWFC  149 (390)
T ss_dssp             CCGGGEEEESCHHHHHHHHHHHSS--CTTCEEEEEESCCHHHHHHHHHTTC-------------EEEEEECEECSSSEEC
T ss_pred             CCHHHEEEcCCHHHHHHHHHHHhc--CCCCEEEEcCCCcHHHHHHHHHCCC-------------EEEEeecccCCCcccc
Confidence            456789999999999999999653  2457899999999998665443221             1111111110 01111


Q ss_pred             CHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccC
Q 011777          232 DAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQG  311 (477)
Q Consensus       232 ~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~g  311 (477)
                      |    +++|+++++   ..++++|++...++++|.+ ++.+++++|.++|++||+++|+||+|++|.++|..+..+...+
T Consensus       150 d----~~~l~~~l~---~~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~  221 (390)
T 1d2f_A          150 D----MGKLEAVLA---KPECKIMLLCSPQNPTGKV-WTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVA  221 (390)
T ss_dssp             C----HHHHHHHHT---STTEEEEEEESSCTTTCCC-CCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTC
T ss_pred             C----HHHHHHHhc---cCCCeEEEEeCCCCCCCcC-cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcc
Confidence            2    578888886   2356777765557777754 5778999999999999999999999999988763222222111


Q ss_pred             CC-cc-eeeeccccc-CccceEEEEeC-HHHHHhhccccc-ccCC-CCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 011777          312 VI-PD-IVTMAKGIG-NGLPLGAVVTT-PEIANVMAQKIQ-FNTF-GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLL  385 (477)
Q Consensus       312 v~-pD-ivt~sK~lg-~G~pig~v~~~-~~~~~~~~~~~~-~~t~-~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~  385 (477)
                      .. +| +.++||.++ +|+|+|+++++ +++++.+..... ..++ +.|+++++++.++++..  +++.++.++..+..+
T Consensus       222 ~~~~d~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~  299 (390)
T 1d2f_A          222 RGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG--APWLDALRIYLKDNL  299 (390)
T ss_dssp             CSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred             hhhHhhccCccHhhcccChhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHH
Confidence            11 13 788999999 79999999985 788887765544 4565 77999999999998753  233444444434444


Q ss_pred             HHHHHHHHh-CCCceeeeccc-eeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCC
Q 011777          386 GRLRTLQER-HDIIGDVRGRG-LMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCF  458 (477)
Q Consensus       386 ~~L~~l~~~-~~~~~~v~g~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~  458 (477)
                      +.+.+...+ ++.+..+++.| +++++++....       ....++.+.|. ++||++.++..+    .+++||+++.  
T Consensus       300 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~--  370 (390)
T 1d2f_A          300 TYIADKMNAAFPELNWQIPQSTYLAWLDLRPLN-------IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC--  370 (390)
T ss_dssp             HHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGC-------CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS--
T ss_pred             HHHHHHHHhhCCCCEEecCCccEEEEEEccccC-------CCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC--
Confidence            444333333 34344445555 44567763210       01456888888 689999987533    4799998775  


Q ss_pred             cHHHHHHHHHHHHHHHhh
Q 011777          459 TKDDADFLVDALDYSMSK  476 (477)
Q Consensus       459 t~e~i~~~l~~l~~~l~~  476 (477)
                      +++++++++++|++++++
T Consensus       371 ~~~~l~~~l~~l~~~l~~  388 (390)
T 1d2f_A          371 PRSKLEKGVAGLINAIRA  388 (390)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            589999999999998864

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=100.00  E-value=4.5e-35  Score=295.01  Aligned_cols=356  Identities=12%  Similarity=0.043  Sum_probs=250.7

Q ss_pred             eeEEeeeccEEEeCCCCEE-----EeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCC--
Q 011777           80 LNIVEGKMQYLFDENGRRY-----LDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMP--  152 (477)
Q Consensus        80 ~~~~~g~G~~~~d~dG~~y-----lD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~--  152 (477)
                      +...+|+|+++||.+|++|     |||..+.   +..+.+|+|.+++.+++.+..+....+..+.+.++++++++.++  
T Consensus        11 ~~~~~~~g~~~~d~~~~~~~~~~~i~l~~~~---~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~   87 (391)
T 4dq6_A           11 IVDRSNNFSSKWSEMEKKYGTNDLLPMWVAD---MDFKAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWK   87 (391)
T ss_dssp             CCCCTTTTBHHHHCHHHHHSCSCSEECCSSS---CSSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCCC
T ss_pred             ccccccCCceeeeecccccCCCCceeccccC---CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence            4456889999999987665     9998774   23357899999999999864443333456778899999998876  


Q ss_pred             CCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCC-c-CCCCC
Q 011777          153 GNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDP-Y-HGSFG  230 (477)
Q Consensus       153 ~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~  230 (477)
                      .+.++|++++||++|++.+++.+.  .+++.|++..++||+........+             ...+.+|.. + ...+.
T Consensus        88 ~~~~~v~~~~g~~~a~~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~~  152 (391)
T 4dq6_A           88 IKSEWLIYSPGVIPAISLLINELT--KANDKIMIQEPVYSPFNSVVKNNN-------------RELIISPLQKLENGNYI  152 (391)
T ss_dssp             CCGGGEEEESCHHHHHHHHHHHHS--CTTCEEEECSSCCTHHHHHHHHTT-------------CEEEECCCEECTTSCEE
T ss_pred             CcHHHeEEcCChHHHHHHHHHHhC--CCCCEEEEcCCCCHHHHHHHHHcC-------------CeEEeeeeeecCCCceE
Confidence            556789999999999999999763  356789999999998766544332             222222221 0 01111


Q ss_pred             CCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc
Q 011777          231 SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ  310 (477)
Q Consensus       231 ~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~  310 (477)
                      .|    +++++++++    + +++|+++..++++|. .++++.+++|.++|++||+++|+||+|++|.++|.....+...
T Consensus       153 ~d----~~~l~~~l~----~-~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~  222 (391)
T 4dq6_A          153 MD----YEDIENKIK----D-VKLFILCNPHNPVGR-VWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASI  222 (391)
T ss_dssp             CC----HHHHHHHCT----T-EEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred             ee----HHHHHHHhh----c-CCEEEEECCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHc
Confidence            12    578888876    2 777777777888885 5577889999999999999999999999998877322222222


Q ss_pred             -----CCCcceeeeccccc-CccceEEEEeCH-HHHHhhcccc-cccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHH
Q 011777          311 -----GVIPDIVTMAKGIG-NGLPLGAVVTTP-EIANVMAQKI-QFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADV  380 (477)
Q Consensus       311 -----gv~pDivt~sK~lg-~G~pig~v~~~~-~~~~~~~~~~-~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~  380 (477)
                           +....+.++||.++ +|+|+|++++++ ++++.+.... +.++++.|+++++++.++++..++  ++..++++++
T Consensus       223 ~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  302 (391)
T 4dq6_A          223 SKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLESFLEYLESN  302 (391)
T ss_dssp             CHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence                 22344668999998 689999999985 8888776543 345668899999999999885321  2333444444


Q ss_pred             HHHHHHHHHHHHHhCCCceeeeccceeE-EEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccCCC----CCEEEEeC
Q 011777          381 GSHLLGRLRTLQERHDIIGDVRGRGLMV-GMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGGLH----GNVFRIKP  454 (477)
Q Consensus       381 ~~~l~~~L~~l~~~~~~~~~v~g~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----~~~iRi~p  454 (477)
                      .+++.+.|++.   .+.+...++.+.++ ++++....       ....++.+.|+++ ||++.++..+    .+++||++
T Consensus       303 ~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~  372 (391)
T 4dq6_A          303 IDFAIKYINEN---MPKLKVRKPEGTYLLWVDFSALG-------LSDEELESILVQKGKVALNQGNSFGIGGSGYQRINL  372 (391)
T ss_dssp             HHHHHHHHHHH---CTTSEECCCSBSSEEEEECGGGC-------CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEEC
T ss_pred             HHHHHHHHHhh---CCCCEecCCCccEEEEEEhhhcC-------CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEE
Confidence            45554444432   34444455555544 56663210       1245788889988 9999886432    37899987


Q ss_pred             CCCCcHHHHHHHHHHHHHHHh
Q 011777          455 PMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       455 ~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      +  ++++++++++++|+++++
T Consensus       373 ~--~~~~~i~~~l~~l~~~l~  391 (391)
T 4dq6_A          373 A--CPRSMLEEALIRIKNAIN  391 (391)
T ss_dssp             C--SCHHHHHHHHHHHHHHHC
T ss_pred             c--CCHHHHHHHHHHHHHHhC
Confidence            6  689999999999998873

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=100.00  E-value=1e-34  Score=293.65  Aligned_cols=359  Identities=10%  Similarity=0.002  Sum_probs=243.2

Q ss_pred             eEEeeeccEEEeCCCC-------EEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCC-
Q 011777           81 NIVEGKMQYLFDENGR-------RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMP-  152 (477)
Q Consensus        81 ~~~~g~G~~~~d~dG~-------~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~-  152 (477)
                      +..+|+|+++||.||+       .++||..+.  +.++ .+|+|.+++.++++...........+.+..+++.+.+.++ 
T Consensus         9 ~~~~~~g~~~~d~~g~~~g~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~   85 (399)
T 1c7n_A            9 ISRKNLGSLKWDLMYSQNPEVGNEVVPLSVAD--MEFK-NPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQW   85 (399)
T ss_dssp             CCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSS--CSSC-CCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred             ccccCCCccccccchhhccccCCCceeeeecC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHhCC
Confidence            3457999999999884       789997765  3455 6899999999998753211111123344555555554444 


Q ss_pred             -CCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcC-CCCC
Q 011777          153 -GNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYH-GSFG  230 (477)
Q Consensus       153 -~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  230 (477)
                       .+.++|++++||++|++.+++...  .++++|++..++||++...+...+             ...+.+|.... +.+.
T Consensus        86 ~~~~~~v~~t~g~~~a~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~g-------------~~~~~~~~~~~~g~~~  150 (399)
T 1c7n_A           86 DIQTDWIINTAGVVPAVFNAVREFT--KPGDGVIIITPVYYPFFMAIKNQE-------------RKIIECELLEKDGYYT  150 (399)
T ss_dssp             CCCGGGEEEESSHHHHHHHHHHHHC--CTTCEEEECSSCCTHHHHHHHTTT-------------CEEEECCCEEETTEEE
T ss_pred             CCChhhEEEcCCHHHHHHHHHHHhc--CCCCEEEEcCCCcHhHHHHHHHcC-------------CEEEecccccCCCCEE
Confidence             456789999999999999999663  356789999999999866544332             12222221100 0111


Q ss_pred             CCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccc-
Q 011777          231 SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET-  309 (477)
Q Consensus       231 ~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~-  309 (477)
                      .|    +++|++.++.   .++++|+++..++++|. .++++++++|.++|++||+++|+||+|++|+++|..+..+.. 
T Consensus       151 ~d----~~~l~~~l~~---~~~~~v~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~  222 (399)
T 1c7n_A          151 ID----FQKLEKLSKD---KNNKALLFCSPHNPVGR-VWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSI  222 (399)
T ss_dssp             CC----HHHHHHHHTC---TTEEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred             Ec----HHHHHHHhcc---CCCcEEEEcCCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHc
Confidence            11    5788888862   35777777666777785 567889999999999999999999999999877632333322 


Q ss_pred             ----cCCCcceeeeccccc-CccceEEEEeC-HHHHHhhcccccccCC-CCcHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 011777          310 ----QGVIPDIVTMAKGIG-NGLPLGAVVTT-PEIANVMAQKIQFNTF-GGNPVCSAGGLAVLRVIDKERRQAHCADVGS  382 (477)
Q Consensus       310 ----~gv~pDivt~sK~lg-~G~pig~v~~~-~~~~~~~~~~~~~~t~-~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~  382 (477)
                          .+...++.++||.++ +|+|+|+++++ +++++.+.......++ +.|+++++++.++|+..  +++.++.++..+
T Consensus       223 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~  300 (399)
T 1c7n_A          223 DEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKEC--GKWLDGCIKVID  300 (399)
T ss_dssp             CHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHH
T ss_pred             CccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC--hHHHHHHHHHHH
Confidence                233445668999999 79999999997 6788887765444444 57999999999998753  334444444444


Q ss_pred             HHHHHHHHHHHh-CCCceeeecccee-EEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCC
Q 011777          383 HLLGRLRTLQER-HDIIGDVRGRGLM-VGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPP  455 (477)
Q Consensus       383 ~l~~~L~~l~~~-~~~~~~v~g~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~  455 (477)
                      ..++.+.+...+ ++.+..+++.|.+ +++++....       ....++.+.|+ ++||++.++..+    .+++||+++
T Consensus       301 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~  373 (399)
T 1c7n_A          301 KNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALK-------MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLA  373 (399)
T ss_dssp             HHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGGC-------CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECC
T ss_pred             HHHHHHHHHHHhhCCCCeEecCCceEEEEEEcccCC-------CCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEec
Confidence            444444443333 4434444555554 467763210       01356888887 689999987433    479999877


Q ss_pred             CCCcHHHHHHHHHHHHHHHhh
Q 011777          456 MCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       456 ~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .  +++++++++++|.+++++
T Consensus       374 ~--~~~~l~~~l~~l~~~l~~  392 (399)
T 1c7n_A          374 A--PSSVIQESLERLNKALKD  392 (399)
T ss_dssp             S--CHHHHHHHHHHHHHHHHH
T ss_pred             c--CHHHHHHHHHHHHHHHHH
Confidence            5  489999999999998864

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=100.00  E-value=2.1e-33  Score=283.95  Aligned_cols=347  Identities=13%  Similarity=0.091  Sum_probs=256.3

Q ss_pred             ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCC-CCHHHHHHHHHHHhhccccc-----cccCChHHHHHHHHHHh
Q 011777           76 YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGH-CHPDVLNAIFEQSKLLQHAT-----TIYLHHAIADFAEALAS  149 (477)
Q Consensus        76 ~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~Av~~~l~~~~~~~-----~~~~~~~~~~l~~~La~  149 (477)
                      ++.|+.+.+++|.++| .+|+.||||.+|.+   +|| .+|++.+++.++++...+..     ..+..+...++++++++
T Consensus        24 ~~~~~~~~~~~g~~~~-~~g~~~idl~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~   99 (398)
T 3a2b_A           24 YAYFRPIQSKQDTEVK-IDGRRVLMFGSNSY---LGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSA   99 (398)
T ss_dssp             CCSSCCBCSCSSSEEE-ETTEEEEECSCSCT---TCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHH
T ss_pred             ccceeeecCCCCceEE-ECCceEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHH
Confidence            3567889999999999 99999999998854   688 79999999999987643211     12345778999999999


Q ss_pred             hCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCC
Q 011777          150 KMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSF  229 (477)
Q Consensus       150 ~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (477)
                      +++.  +++++++||++|++.+++.+.  .+++.|++..++|.+. .......            |...+.+|.     .
T Consensus       100 ~~g~--~~v~~~~ggt~a~~~~~~~~~--~~gd~V~~~~p~~~~~-~~~~~~~------------g~~~~~v~~-----~  157 (398)
T 3a2b_A          100 YVGK--EAAILFSTGFQSNLGPLSCLM--GRNDYILLDERDHASI-IDGSRLS------------FSKVIKYGH-----N  157 (398)
T ss_dssp             HHTC--SEEEEESSHHHHHHHHHHHSS--CTTCEEEEETTCCHHH-HHHHHHS------------SSEEEEECT-----T
T ss_pred             HhCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEECCccCHHH-HHHHHHc------------CCceEEeCC-----C
Confidence            8854  689999999999999998663  2456677766666544 3332222            222222221     1


Q ss_pred             CCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCc--cCCCCCCccc
Q 011777          230 GSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGF--GRTGSHYWGF  307 (477)
Q Consensus       230 ~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gf--gr~G~~~~~~  307 (477)
                        |    .++++++++....+++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+.+  ++++ ..+ .
T Consensus       158 --d----~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~-~~~-~  225 (398)
T 3a2b_A          158 --N----MEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKG-AGT-A  225 (398)
T ss_dssp             --C----HHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGG-CCH-H
T ss_pred             --C----HHHHHHHHHhhccCCceEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCC-Cch-H
Confidence              1    478888887322126889999999999997776    999999999999999999999744  3434 222 2


Q ss_pred             cccCCC--ccee--eecccccC-ccceEEEEeCHHHHHhhccc--ccccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHH
Q 011777          308 ETQGVI--PDIV--TMAKGIGN-GLPLGAVVTTPEIANVMAQK--IQFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCAD  379 (477)
Q Consensus       308 ~~~gv~--pDiv--t~sK~lg~-G~pig~v~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~  379 (477)
                      +.+++.  +|++  ++||.++. |   ||+++++++++.+...  .+..+...++..++++.++|+.++. ++..+++++
T Consensus       226 ~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~  302 (398)
T 3a2b_A          226 SHFGLNDDVDLIMGTFSKSLASLG---GFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWK  302 (398)
T ss_dssp             HHHTCGGGCSEEEEESSSTTCSSC---EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHH
T ss_pred             hhcCCCcCCeEEEecccccccCCC---cEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            444543  5777  89999984 5   9999999998887653  2345556677777777788876543 467788888


Q ss_pred             HHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC-----CCEEEEeC
Q 011777          380 VGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH-----GNVFRIKP  454 (477)
Q Consensus       380 ~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-----~~~iRi~p  454 (477)
                      +.+++.+.|+++  ....   .++.|.++++.+.        ......++.+.|+++||.+.++..+     .+++||++
T Consensus       303 ~~~~l~~~L~~~--g~~~---~~~~g~~~~~~~~--------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~  369 (398)
T 3a2b_A          303 NTDYAKAQLLDH--GFDL---GATESPILPIFIR--------SNEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSL  369 (398)
T ss_dssp             HHHHHHHHHHHT--TCCB---CSCCSSEEEEECC--------CHHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEEC
T ss_pred             HHHHHHHHHHhc--CCCc---CCCCCCEEEEEcC--------CHHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEE
Confidence            888888888775  2222   3456888888762        2334567889999999999987543     47899999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhh
Q 011777          455 PMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       455 ~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +..++++++++++++|++++++
T Consensus       370 ~~~~~~e~i~~~~~~l~~~l~~  391 (398)
T 3a2b_A          370 MATHTYDQIDEAIEKMVKVFKQ  391 (398)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHHHHH
Confidence            9888999999999999999875

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=100.00  E-value=7.3e-34  Score=290.28  Aligned_cols=351  Identities=11%  Similarity=-0.005  Sum_probs=239.1

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccccc-----CChHHHHHHHHHHhhCC--CCCC-EEEEeCChHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY-----LHHAIADFAEALASKMP--GNLK-VVYFVNSGTEAN  168 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~-----~~~~~~~l~~~La~~~~--~~~~-~v~~~~sGseA~  168 (477)
                      .+|||..|..  .+| .+|+|.+++.++++........|     ..+.++.+++.+.+.++  .+.+ +|+|++||++|+
T Consensus        38 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~  114 (429)
T 1yiz_A           38 KPLNLGQGFP--DYH-APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEAL  114 (429)
T ss_dssp             CCEECCSSSC--SSC-CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred             CEEEecCCCC--CCC-CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHH
Confidence            5889988765  567 68999999999987621111122     23344555555554434  4567 899999999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCC--------CCCCCHHHHHHHH
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHG--------SFGSDAARYAQDL  240 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l  240 (477)
                      +.+++.+.  .+++.|++..++||++.......+             ...+.+|.....        .+..|    +++|
T Consensus       115 ~~~~~~~~--~~gd~Vl~~~p~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~d----~~~l  175 (429)
T 1yiz_A          115 YATIQGHV--DEGDEVIIIEPFFDCYEPMVKAAG-------------GIPRFIPLKPNKTGGTISSADWVLD----NNEL  175 (429)
T ss_dssp             HHHHHHHC--CTTCEEEEEESCCTTHHHHHHHTT-------------CEEEEEECBCCCSSSSEEGGGCBCC----HHHH
T ss_pred             HHHHHHhc--CCCCEEEEcCCCchhHHHHHHHcC-------------CEEEEEeCCcccccccccccCcccC----HHHH
Confidence            99999764  256789999999999765443221             111111111100        11112    5778


Q ss_pred             HHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccc----ccCCCcce
Q 011777          241 QDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE----TQGVIPDI  316 (477)
Q Consensus       241 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~----~~gv~pDi  316 (477)
                      ++.++    +++++|+++++++++|.+ ++++++++|.++|++||+++|+||+|++|+++|.....+.    ..+..+++
T Consensus       176 ~~~l~----~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~  250 (429)
T 1yiz_A          176 EALFN----EKTKMIIINTPHNPLGKV-MDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITI  250 (429)
T ss_dssp             HHHCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEE
T ss_pred             HHHhc----cCceEEEECCCCCCCCcc-CCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEE
Confidence            87775    467888888888888855 5788999999999999999999999999987763222222    34456667


Q ss_pred             eeeccccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHh-----hchhhHHHHHHHHHHHHHHHHHH
Q 011777          317 VTMAKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRV-----IDKERRQAHCADVGSHLLGRLRT  390 (477)
Q Consensus       317 vt~sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~-----l~~~~~~~~~~~~~~~l~~~L~~  390 (477)
                      .++||.++ +|+|+|++++++++++.+....+..+++.|+++++++.++|+.     ...+++.+++++..+..++.|.+
T Consensus       251 ~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  330 (429)
T 1yiz_A          251 GSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMAS  330 (429)
T ss_dssp             EEHHHHHTCGGGCCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred             ecchhccCCCCcceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            78999999 6999999999999998887666667899999999999999987     43344444444444444444433


Q ss_pred             HHHhCCCceeeeccceeEEEEEeeCCCCC----CccHHHHHHHHHHHH-HcCceeeccCCC---------CCEEEEeCCC
Q 011777          391 LQERHDIIGDVRGRGLMVGMELVTDRKEK----TPAKAETAVLFEKLR-ELGVLVGKGGLH---------GNVFRIKPPM  456 (477)
Q Consensus       391 l~~~~~~~~~v~g~g~~~~i~~~~~~~~~----~~~~~~~~~~~~~l~-~~Gv~v~~~~~~---------~~~iRi~p~~  456 (477)
                      ...+++........|+++++++.......    ........++.+.|. ++||++.++..+         .+++||+++ 
T Consensus       331 ~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~-  409 (429)
T 1yiz_A          331 FLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF-  409 (429)
T ss_dssp             HHHHHTCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC-
T ss_pred             HHHhCCCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec-
Confidence            33333433223334778888874321000    000012456777776 789999887432         579999887 


Q ss_pred             CCcHHHHHHHHHHHHHHHhh
Q 011777          457 CFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       457 ~~t~e~i~~~l~~l~~~l~~  476 (477)
                       .++++|++++++|++++++
T Consensus       410 -~~~e~i~~~l~~l~~~l~~  428 (429)
T 1yiz_A          410 -KKDENLQKAAEILRKWKGS  428 (429)
T ss_dssp             -SCHHHHHHHHHHHHHHSCC
T ss_pred             -CCHHHHHHHHHHHHHhccC
Confidence             4899999999999998765

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=100.00  E-value=3.6e-33  Score=278.16  Aligned_cols=343  Identities=16%  Similarity=0.100  Sum_probs=235.5

Q ss_pred             ceeEEeeeccEEEe-CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCE
Q 011777           79 PLNIVEGKMQYLFD-ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKV  157 (477)
Q Consensus        79 p~~~~~g~G~~~~d-~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~  157 (477)
                      ++.+.+|.+.+.++ .+|+++|||.+|..  +++ .+|+|.+++.++++...    .|+++...+++++|+++++.+.++
T Consensus         8 ~~~~~~g~~~~~~~~~~~~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~----~y~~~~~~~l~~~la~~~~~~~~~   80 (361)
T 3ftb_A            8 GDLMIHGGDIYTEGVFKGRELLDYSSNIN--PLG-IPKSFLNNIDEGIKNLG----VYPDVNYRRLNKSIENYLKLKDIG   80 (361)
T ss_dssp             --------------------CEETTCCCC--TTC-SCHHHHTTHHHHHHGGG----SCCCTTCHHHHHHHHHHHTCCSCE
T ss_pred             CccccCCCCHHHHhhcCCCCEEEecCCCC--CCC-CCHHHHHHHHHHHHHhc----CCCCccHHHHHHHHHHHhCCCcce
Confidence            45566666655555 49999999998864  455 58999999999987632    234555678999999998777789


Q ss_pred             EEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHH
Q 011777          158 VYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYA  237 (477)
Q Consensus       158 v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (477)
                      ++||+||++|++.+++.+      ++|++..++||+........+             ...+.+|......++      +
T Consensus        81 i~~~~g~t~al~~~~~~~------d~vi~~~~~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~------~  135 (361)
T 3ftb_A           81 IVLGNGASEIIELSISLF------EKILIIVPSYAEYEINAKKHG-------------VSVVFSYLDENMCID------Y  135 (361)
T ss_dssp             EEEESSHHHHHHHHHTTC------SEEEEEESCCTHHHHHHHHTT-------------CEEEEEECCTTSCCC------H
T ss_pred             EEEcCCHHHHHHHHHHHc------CcEEEecCChHHHHHHHHHcC-------------CeEEEeecCcccCCC------H
Confidence            999999999999999854      789999999998766544332             222222222122233      4


Q ss_pred             HHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcc--
Q 011777          238 QDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPD--  315 (477)
Q Consensus       238 ~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pD--  315 (477)
                      +++++.++   +  +++|+++..++++|. .++.+.+++|.++|++||+++|+||+|++|.+.+ ........+..++  
T Consensus       136 ~~l~~~l~---~--~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~i  208 (361)
T 3ftb_A          136 EDIISKID---D--VDSVIIGNPNNPNGG-LINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDP-SSSFVGEIKNYSCLF  208 (361)
T ss_dssp             HHHHHHTT---T--CSEEEEETTBTTTTB-CCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCT-TSSSGGGTTTCSSEE
T ss_pred             HHHHHhcc---C--CCEEEEeCCCCCCCC-CCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCc-ccchhHhcccCCCEE
Confidence            77888776   2  455555555667774 5578889999999999999999999999987752 2222333333333  


Q ss_pred             -eeeeccccc-CccceEEEE-eCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHH
Q 011777          316 -IVTMAKGIG-NGLPLGAVV-TTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQ  392 (477)
Q Consensus       316 -ivt~sK~lg-~G~pig~v~-~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~  392 (477)
                       +.++||.++ +|+|+|+++ .++++++.+....  .+++.|+++++++.++|+.   ++..++.++..+..++.+.+..
T Consensus       209 ~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l  283 (361)
T 3ftb_A          209 IIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQ--NPWNINCFAEMAAINCLKD---TNYIEESLLWIKKERKRFIEEL  283 (361)
T ss_dssp             EEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTS--CTTCSCHHHHHHHHHTSSC---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhC--CCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHH
Confidence             337899999 699999998 8999998887543  4678899999999988873   3444555555555555555555


Q ss_pred             HhCCCce-eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHH
Q 011777          393 ERHDIIG-DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLV  467 (477)
Q Consensus       393 ~~~~~~~-~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l  467 (477)
                      .+++.+. ..++.|.++++.+..         ....++.+.|.++||.+.++..+    .+++||+++   +++++++++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~  351 (361)
T 3ftb_A          284 NKIGFIKRVFSPHANFVLCRLEN---------ISGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK---DEKKNTKFL  351 (361)
T ss_dssp             HHSSSEEEEECCSSSEEEEEESS---------SCHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHH
T ss_pred             HhCCCCceecCCCCeEEEEEcCC---------CCHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC---CHHHHHHHH
Confidence            5566565 677889998887732         12457888999999999987433    579999865   788999999


Q ss_pred             HHHHHHHhhC
Q 011777          468 DALDYSMSKL  477 (477)
Q Consensus       468 ~~l~~~l~~l  477 (477)
                      +.|+++.+.+
T Consensus       352 ~~l~~~~~~l  361 (361)
T 3ftb_A          352 RALKGVENNL  361 (361)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHhcC
Confidence            9998877653

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=100.00  E-value=7.9e-34  Score=288.28  Aligned_cols=338  Identities=15%  Similarity=0.074  Sum_probs=246.9

Q ss_pred             EeeeccEEEeCCCCEEEeecCCcccccCCC-CCHHHHHHHHHHHhhcccc-----ccccCChHHHHHHHHHHhhCCCCCC
Q 011777           83 VEGKMQYLFDENGRRYLDAFAGIVTVSCGH-CHPDVLNAIFEQSKLLQHA-----TTIYLHHAIADFAEALASKMPGNLK  156 (477)
Q Consensus        83 ~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~Av~~~l~~~~~~-----~~~~~~~~~~~l~~~La~~~~~~~~  156 (477)
                      ..+.+.+++|.||++||||.++.   .+|+ .||+|++++.+++++....     ...+..+...+++++|+++++.  +
T Consensus        46 ~~~~~~~~~~~~g~~~ld~~s~~---~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~--~  120 (409)
T 3kki_A           46 KNGKHLVLGKQASPDDIILQSND---YLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGF--D  120 (409)
T ss_dssp             TTSSCTTCCCCCCTTSEECCCSC---TTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTC--S
T ss_pred             cCCCeeeeCCCCCCceEEeeccC---ccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCC--C
Confidence            35678889999999999998764   3555 5899999999999874211     1112345567899999999854  5


Q ss_pred             EEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHH
Q 011777          157 VVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARY  236 (477)
Q Consensus       157 ~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (477)
                      ..++++||++|++.+++...  .+++.|++..+ +|+.........+            ...++++.      . |    
T Consensus       121 ~~i~~~sGt~a~~~~l~~~~--~~gd~Vl~~~~-~~~~~~~~~~~~g------------~~~~~~~~------~-d----  174 (409)
T 3kki_A          121 ECLLSQSGWNANVGLLQTIC--QPNTNVYIDFF-AHMSLWEGARYAN------------AQAHPFMH------N-N----  174 (409)
T ss_dssp             EEEEESCHHHHHHHHHHHHC--CTTCEEEEETT-SCHHHHHHHHHTT------------CEEEEECT------T-C----
T ss_pred             eEEEecchHHHHHHHHHHhc--CCCCEEEECCC-cCHHHHHHHHHcC------------CeEEEecC------C-C----
Confidence            67888999999999998653  24455555544 4444433333322            22222211      1 1    


Q ss_pred             HHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccC--ccCCCCCCccccccCC--
Q 011777          237 AQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG--FGRTGSHYWGFETQGV--  312 (477)
Q Consensus       237 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g--fgr~G~~~~~~~~~gv--  312 (477)
                      +++|+++++.   .++++|+++++++++|.+.+    +++|.++|++||++||+||+|++  +|++| ..+. ..+++  
T Consensus       175 ~~~le~~l~~---~~~~~vi~~~~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g-~~~~-~~~~~~~  245 (409)
T 3kki_A          175 CDHLRMLIQR---HGPGIIVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNG-AGLL-AELGLTR  245 (409)
T ss_dssp             HHHHHHHHHH---HCSCEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGG-CCHH-HHHTCGG
T ss_pred             HHHHHHHHHh---cCCeEEEECCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCC-Ccch-hhcCCCC
Confidence            5888888873   24589999999999997776    99999999999999999999998  77777 3332 44555  


Q ss_pred             Ccce--eeecccccCccceEEEEeCHHHHHhhcccccc--cCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHH
Q 011777          313 IPDI--VTMAKGIGNGLPLGAVVTTPEIANVMAQKIQF--NTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGR  387 (477)
Q Consensus       313 ~pDi--vt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~--~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~  387 (477)
                      .+|+  .++||++++|  .|++++++++++.+......  .+.+.++++++++.++++.+++ +++.++++++++++++.
T Consensus       246 ~~di~~~s~sK~~~~~--gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~  323 (409)
T 3kki_A          246 EVHFMTASLAKTFAYR--AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIG  323 (409)
T ss_dssp             GCSEEEEESSSTTCSS--CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEeecchhhCCC--ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            4566  5789999975  49999999988777653222  2334678999999999998765 46778888888888888


Q ss_pred             HHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-----CCCCEEEEeCCCCCcHHH
Q 011777          388 LRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-----LHGNVFRIKPPMCFTKDD  462 (477)
Q Consensus       388 L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~iRi~p~~~~t~e~  462 (477)
                      |+++  .+.    +.+.|.++++.+..        .....++.+.|+++||++.+..     ...+++||+++..++++|
T Consensus       324 L~~~--g~~----~~~~~~~~~~~~~~--------~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~  389 (409)
T 3kki_A          324 LSQL--GLT----IRSESQIIGLETGD--------ERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQ  389 (409)
T ss_dssp             HHTT--TCC----CCCSSSEEEEEEES--------HHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHH
T ss_pred             HHHc--CCc----cCCCCCEEEEEeCC--------HHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHH
Confidence            8765  222    33578888888732        2345678899999999987642     124799999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 011777          463 ADFLVDALDYSMSK  476 (477)
Q Consensus       463 i~~~l~~l~~~l~~  476 (477)
                      |++++++|+++++.
T Consensus       390 i~~~~~~l~~~l~~  403 (409)
T 3kki_A          390 IAKIIEVCSDAVNY  403 (409)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999999864

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=100.00  E-value=2.2e-33  Score=284.62  Aligned_cols=346  Identities=17%  Similarity=0.066  Sum_probs=241.7

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccC-----ChHHHHHHHHHHhhCC--CCCCEEEEeCChHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL-----HHAIADFAEALASKMP--GNLKVVYFVNSGTE  166 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~-----~~~~~~l~~~La~~~~--~~~~~v~~~~sGse  166 (477)
                      .|+.+|||.+|.+. ..||++|++.+++.+++++...... |.     .+.+..+++.+.+..+  .+.++|++++||++
T Consensus        32 ~g~~~idl~~g~~~-~~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~  109 (407)
T 2zc0_A           32 KGVKLISLAAGDPD-PELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTG  109 (407)
T ss_dssp             SSCCCEECCSCCCC-TTTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHH
T ss_pred             CCCceEeCCCCCCC-chhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHH
Confidence            37789999988864 3588999999999999986431112 32     2334445555544335  45678999999999


Q ss_pred             HHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777          167 ANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF  246 (477)
Q Consensus       167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~  246 (477)
                      |++.+++.+..  +++.|++..++||+........+.           .+..++..  .. .++      +++|+++++.
T Consensus       110 a~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~--~~-~~d------~~~l~~~l~~  167 (407)
T 2zc0_A          110 ALDLLGRVLID--PGDVVITENPSYINTLLAFEQLGA-----------KIEGVPVD--ND-GMR------VDLLEEKIKE  167 (407)
T ss_dssp             HHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHTTTC-----------EEEEEEEE--TT-EEC------HHHHHHHHHH
T ss_pred             HHHHHHHHhcC--CCCEEEEeCCChHHHHHHHHHcCC-----------EEEEcccC--CC-CCC------HHHHHHHHHh
Confidence            99999998743  567899999999987554322211           11122211  00 111      5778887761


Q ss_pred             c--CCCCeeEEE-ecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc---CCCcceeeec
Q 011777          247 G--TSGKVAGFI-AETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ---GVIPDIVTMA  320 (477)
Q Consensus       247 ~--~~~~~a~vi-~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~---gv~pDivt~s  320 (477)
                      .  ...++++|+ ++..++++|. .++.+++++|.++|++||+++|+||+|+++.++|..+..+..+   +...++.++|
T Consensus       168 ~~~~~~~~~~v~~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  246 (407)
T 2zc0_A          168 LKAKGQKVKLIYTIPTGQNPMGV-TMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLS  246 (407)
T ss_dssp             HHHTTCCEEEEEECCSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEEST
T ss_pred             hhcccCCceEEEECCCCCCCCCc-CCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccc
Confidence            1  113677764 5556777885 4578899999999999999999999999987766322233222   3345677899


Q ss_pred             ccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc-----hhhHHHHHHHHHHHHHHHHHHHHHhC
Q 011777          321 KGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID-----KERRQAHCADVGSHLLGRLRTLQERH  395 (477)
Q Consensus       321 K~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~-----~~~~~~~~~~~~~~l~~~L~~l~~~~  395 (477)
                      |.+++|+|+|++++++++++.+.......+++.+++++.++.++++...     -++..++++++.+++.+.|++.   .
T Consensus       247 K~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~  323 (407)
T 2zc0_A          247 KVLGTGFRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENH---L  323 (407)
T ss_dssp             TTTCTTSCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHH---C
T ss_pred             cccCCCcceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHh---C
Confidence            9999999999999999999888766666778889999999999998641     1345566666677777766553   2


Q ss_pred             CCcee-eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccCCC------CCEEEEeCCCCCcHHHHHHHH
Q 011777          396 DIIGD-VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGGLH------GNVFRIKPPMCFTKDDADFLV  467 (477)
Q Consensus       396 ~~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~------~~~iRi~p~~~~t~e~i~~~l  467 (477)
                      +.+.. .+..|+++++++...        ....++.+.|.++ ||++.++..+      .+++||+++.. +++++++++
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~~  394 (407)
T 2zc0_A          324 PNAEFTKPIAGMFVMFFLPEG--------ADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIGI  394 (407)
T ss_dssp             TTSCBCCCSBSSEEEEECSTT--------CCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHHH
T ss_pred             CCCEEecCCCcEEEEEEcCCC--------CCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHHH
Confidence            21222 234577888876321        1245688889888 9999886432      47899998876 899999999


Q ss_pred             HHHHHHHhh
Q 011777          468 DALDYSMSK  476 (477)
Q Consensus       468 ~~l~~~l~~  476 (477)
                      ++|++++++
T Consensus       395 ~~l~~~l~~  403 (407)
T 2zc0_A          395 KKLAKLYKE  403 (407)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998864

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=100.00  E-value=6.6e-33  Score=284.91  Aligned_cols=346  Identities=12%  Similarity=0.074  Sum_probs=238.1

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-----ccccccCChHHHHHHHHHHhhCCC-CCCEEEEeCChHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-----HATTIYLHHAIADFAEALASKMPG-NLKVVYFVNSGTEAN  168 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-----~~~~~~~~~~~~~l~~~La~~~~~-~~~~v~~~~sGseA~  168 (477)
                      +..+|||.+|.+... +++++++.+++.+++++..     +....+..+.++.+++.+.+..+. +.++|++|+||++|+
T Consensus        75 ~~~~i~l~~g~p~~~-~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al  153 (448)
T 3aow_A           75 TSDIISLAGGLPNPK-TFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQAL  153 (448)
T ss_dssp             TSSSEECCCCCCCGG-GSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHH
T ss_pred             CCCcEeCCCCCCCch-hCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHH
Confidence            456899999887543 5788999999999987632     111112223344444444333354 568999999999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc-
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG-  247 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~-  247 (477)
                      +.+++++.  .+++.|++.+++||++.......+             ...+.+|.... .+  |    +++|+++++.. 
T Consensus       154 ~~~~~~l~--~~Gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~-g~--d----~~~L~~~l~~~~  211 (448)
T 3aow_A          154 DLIGRVFL--NPGDIVVVEAPTYLAALQAFNFYE-------------PQYIQIPLDDE-GM--K----VEILEEKLKELK  211 (448)
T ss_dssp             HHHHHHHC--CTTCEEEEEESCCHHHHHHHHTTC-------------CEEEEEEEETT-EE--C----HHHHHHHHHHHH
T ss_pred             HHHHHHHc--CCCCEEEEeCCChHHHHHHHHHcC-------------CEEEEeccCCC-CC--C----HHHHHHHHhhhh
Confidence            99999763  356889999999999766543321             11111111100 11  1    57788877510 


Q ss_pred             -CCCCeeEEEecc-cCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCC---CccccccCCCcceeeeccc
Q 011777          248 -TSGKVAGFIAET-IQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH---YWGFETQGVIPDIVTMAKG  322 (477)
Q Consensus       248 -~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~---~~~~~~~gv~pDivt~sK~  322 (477)
                       ...++++|++.| .+|++|. .++.+++++|.++|++||++||+||+|++|.+.|..   +..++..+..+++.+|||.
T Consensus       212 ~~~~~~k~v~~~~~~~NPtG~-~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~  290 (448)
T 3aow_A          212 SQGKKVKVVYTVPTFQNPAGV-TMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKI  290 (448)
T ss_dssp             HTTCCEEEEEECCSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTT
T ss_pred             ccCCCCeEEEECCCCCCCcCC-CCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhh
Confidence             113678875554 5666775 468899999999999999999999999998776622   2233444556778899999


Q ss_pred             ccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHH----HHHHHHHHHHHHHHHhCC-C
Q 011777          323 IGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCA----DVGSHLLGRLRTLQERHD-I  397 (477)
Q Consensus       323 lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~----~~~~~l~~~L~~l~~~~~-~  397 (477)
                      ++.|+|+||+++++++++.+.......+++.|+++++++.++|+....+++.++++    ++.+++.+.|++.   .+ .
T Consensus       291 ~~~GlriG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~g  367 (448)
T 3aow_A          291 LAPGFRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEF---MPEG  367 (448)
T ss_dssp             TCGGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCTT
T ss_pred             ccccccEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCC
Confidence            99899999999999999988766556678889999999999987532233334444    4444444444332   23 2


Q ss_pred             ceeee-ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC------CCEEEEeCCCCCcHHHHHHHHHHH
Q 011777          398 IGDVR-GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH------GNVFRIKPPMCFTKDDADFLVDAL  470 (477)
Q Consensus       398 ~~~v~-g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~------~~~iRi~p~~~~t~e~i~~~l~~l  470 (477)
                      +..+. ..|+++|+++...        ....++.+.|+++||++.++..+      .+++||+++. .++++|++++++|
T Consensus       368 ~~~~~p~~g~~~~v~~~~~--------~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~L  438 (448)
T 3aow_A          368 VKWTKPEGGMFIWVTLPDG--------IDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKRL  438 (448)
T ss_dssp             CEECCCSBSSEEEEECSTT--------CCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHHHHHHH
T ss_pred             eEEeCCCccEEEEEEcCCC--------CCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHHH
Confidence            33333 3477888887321        12457888899999999987432      4789999876 4899999999999


Q ss_pred             HHHHhh
Q 011777          471 DYSMSK  476 (477)
Q Consensus       471 ~~~l~~  476 (477)
                      .+++++
T Consensus       439 ~~~l~~  444 (448)
T 3aow_A          439 AETIKE  444 (448)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=100.00  E-value=1e-33  Score=286.20  Aligned_cols=343  Identities=14%  Similarity=0.052  Sum_probs=238.7

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCC-hHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH-HAIADFAEALASKMPGNLKVVYFVNSGTEANELAML  173 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~-~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~  173 (477)
                      ++.+|||.+|.+.. .||++|++.+++.+++++.......|.. ....++++.++++++.+.++|++++||++|++.+++
T Consensus        31 ~~~~i~l~~g~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~  109 (397)
T 2zyj_A           31 RPGILSFAGGLPAP-ELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGK  109 (397)
T ss_dssp             STTCEEESSCCCCG-GGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred             CCCceecCCCCCCc-hhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHH
Confidence            45789999887643 5789999999999998763211122332 245678888888876556789999999999999999


Q ss_pred             HHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCee
Q 011777          174 MARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA  253 (477)
Q Consensus       174 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a  253 (477)
                      .+.  .++++|++..++||++.......+.           .+..++...  . .++      .++|++.++.   .+++
T Consensus       110 ~~~--~~gd~Vl~~~p~y~~~~~~~~~~g~-----------~~~~~~~~~--~-~~d------~~~l~~~l~~---~~~~  164 (397)
T 2zyj_A          110 VFL--DEGSPVLLEAPSYMGAIQAFRLQGP-----------RFLTVPAGE--E-GPD------LDALEEVLKR---ERPR  164 (397)
T ss_dssp             HHC--CTTCEEEEEESCCHHHHHHHHTTCC-----------EEEEEEEET--T-EEC------HHHHHHHHHH---CCCS
T ss_pred             HhC--CCCCEEEEeCCCcHHHHHHHHHcCC-----------EEEecCcCC--C-CCC------HHHHHHHHhh---cCCe
Confidence            763  3557899999999997665433221           111221110  0 111      5788888863   2456


Q ss_pred             EE-EecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc------CCCcceeeecccccCc
Q 011777          254 GF-IAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ------GVIPDIVTMAKGIGNG  326 (477)
Q Consensus       254 ~v-i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~------gv~pDivt~sK~lg~G  326 (477)
                      +| ++...++++|. .++.+++++|.++|++||+++|+||+|++|.++|..+..+..+      +....+.++||.+++|
T Consensus       165 ~v~~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G  243 (397)
T 2zyj_A          165 FLYLIPSFQNPTGG-LTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPG  243 (397)
T ss_dssp             CEEECCBSCTTTCC-BCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGG
T ss_pred             EEEECCCCcCCCCC-cCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccccc
Confidence            65 44556677775 4678899999999999999999999999998877322333222      2234456899999988


Q ss_pred             cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCC-Ccee-e
Q 011777          327 LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHD-IIGD-V  401 (477)
Q Consensus       327 ~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~-~~~~-v  401 (477)
                      +|+|++++++++++.+....+..+++.|+++++++.++|+....   ++..++++++.+++.+.|++.   .+ .+.. .
T Consensus       244 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~g~~~~~  320 (397)
T 2zyj_A          244 LRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDRE---VPKEVRYTR  320 (397)
T ss_dssp             GCCEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH---SCTTSEECC
T ss_pred             ceeEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCeEEcc
Confidence            99999999999998887655556777899999999888875321   223333444444444444432   23 2332 2


Q ss_pred             eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC------CCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          402 RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH------GNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       402 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~------~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      +..|+++++++...        ....++.+.|.++||++.++..+      .+++||+++.. +++++++++++|+++++
T Consensus       321 ~~~g~~~~~~~~~~--------~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~  391 (397)
T 2zyj_A          321 PKGGMFVWMELPKG--------LSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATL-DREGIAEGVRRLGRALK  391 (397)
T ss_dssp             CSBSSEEEEECSTT--------CCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS-CHHHHHHHHHHHHHHHH
T ss_pred             CCccEEEEEEcCCC--------CCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHH
Confidence            34577888877321        11457888999999999886432      47999998874 89999999999999876


Q ss_pred             h
Q 011777          476 K  476 (477)
Q Consensus       476 ~  476 (477)
                      +
T Consensus       392 ~  392 (397)
T 2zyj_A          392 G  392 (397)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=100.00  E-value=4.9e-34  Score=289.14  Aligned_cols=361  Identities=12%  Similarity=0.030  Sum_probs=243.0

Q ss_pred             eEEeeeccEEEeCCCC---EEEeecCCcccccCCCCCHHHHHHHHHHHhhcc---ccccccCChHHHHHHHHHHhhCCCC
Q 011777           81 NIVEGKMQYLFDENGR---RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ---HATTIYLHHAIADFAEALASKMPGN  154 (477)
Q Consensus        81 ~~~~g~G~~~~d~dG~---~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~---~~~~~~~~~~~~~l~~~La~~~~~~  154 (477)
                      ++..++|.++++.+++   ++|||.+|... +++ .+|+|++|+.+++++..   +....+..+.+.+++++|++.++.+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~id~~~g~~~-~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~   98 (407)
T 3nra_A           21 VRQSAAGLEALIRGAPIEGRPVDFSHGDVD-AHE-PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAP   98 (407)
T ss_dssp             ------CCTTTCCSCCCCSCCEETTSCCTT-TSC-CCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHhhhhHHHhhcCCCCCceeeecCcCCC-CCC-CcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCC
Confidence            4556777777666555   69999887653 344 68999999999987532   2223344567888999998887653


Q ss_pred             C---CEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCC-Cc-CCCC
Q 011777          155 L---KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPD-PY-HGSF  229 (477)
Q Consensus       155 ~---~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~  229 (477)
                      .   ++++|++||++|++.+++.+  ..+++.|++..++|++........+.           .+..++... .. ...+
T Consensus        99 ~~~~~~i~~~~g~~~a~~~~~~~l--~~~gd~vl~~~~~~~~~~~~~~~~g~-----------~~~~~~~~~~~~~~~~~  165 (407)
T 3nra_A           99 VDARDGLIITPGTQGALFLAVAAT--VARGDKVAIVQPDYFANRKLVEFFEG-----------EMVPVQLDYVSADETRA  165 (407)
T ss_dssp             CCTTTSEEEESHHHHHHHHHHHTT--CCTTCEEEEEESCCTHHHHHHHHTTC-----------EEEEEEBCCCSSCCSSC
T ss_pred             CCCCCcEEEeCCcHHHHHHHHHHh--CCCCCEEEEcCCcccchHHHHHHcCC-----------EEEEeecccccccCcCC
Confidence            2   68999999999999999865  23667899999999987654443321           111222100 00 0111


Q ss_pred             CCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccc
Q 011777          230 GSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET  309 (477)
Q Consensus       230 ~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~  309 (477)
                      ..|    ++++++.++.    ++++|+++..++++|. .++++++++|.++|++||+++|+||+|++|+++|..+..+..
T Consensus       166 ~~d----~~~l~~~l~~----~~~~v~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~  236 (407)
T 3nra_A          166 GLD----LTGLEEAFKA----GARVFLFSNPNNPAGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRA  236 (407)
T ss_dssp             CBC----HHHHHHHHHT----TCCEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGG
T ss_pred             CcC----HHHHHHHHhh----CCcEEEEcCCCCCCCc-ccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhh
Confidence            112    5788888872    4455555555777774 558889999999999999999999999999887733333333


Q ss_pred             -----cCCCcceeeeccccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 011777          310 -----QGVIPDIVTMAKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSH  383 (477)
Q Consensus       310 -----~gv~pDivt~sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~  383 (477)
                           .+..+++.++||.++ +|+|+|++++++++++.+....+..+++.++++++++.++|+.  .+++.++..+..+.
T Consensus       237 ~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~  314 (407)
T 3nra_A          237 EAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDE--APGWMEDRIARHQA  314 (407)
T ss_dssp             CTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCC--CTTHHHHHHHHHHH
T ss_pred             cCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHHHhhhccCCChHHHHHHHHHHhc--cchHHHHHHHHHHH
Confidence                 233355668999999 7999999999999999887766667888889988888777753  12333333444444


Q ss_pred             HHHHHHHHHHhCCCceeeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHH-cCceeeccCCC----CCEEEEeCCCC
Q 011777          384 LLGRLRTLQERHDIIGDVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGGLH----GNVFRIKPPMC  457 (477)
Q Consensus       384 l~~~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~  457 (477)
                      +++.|.+...+++.+..+.+. |+++++.+...       .....++.+.|++ +||++.++..+    .+++||+++. 
T Consensus       315 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-  386 (407)
T 3nra_A          315 IRDELLHVLRGCEGVFARTPQAGSYLFPRLPKL-------AVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ-  386 (407)
T ss_dssp             HHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCB-------SSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS-
T ss_pred             HHHHHHHHHhcCCCceeccCCeeEEEEEeCCCC-------CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC-
Confidence            444444444445434333444 47777766321       1124567788865 59999987433    4789998774 


Q ss_pred             CcHHHHHHHHHHHHHHHhh
Q 011777          458 FTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       458 ~t~e~i~~~l~~l~~~l~~  476 (477)
                       ++++|++++++|++++++
T Consensus       387 -~~~~i~~~~~~l~~~~~~  404 (407)
T 3nra_A          387 -DHEAAVAAARRIVTLVER  404 (407)
T ss_dssp             -CHHHHHHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHHHHH
Confidence             999999999999998864

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=100.00  E-value=2e-32  Score=275.33  Aligned_cols=344  Identities=18%  Similarity=0.187  Sum_probs=250.1

Q ss_pred             ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCC-CCCHHHHHHHHHHHhhccc--ccccc---CChHHHHHHHHHHh
Q 011777           76 YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCG-HCHPDVLNAIFEQSKLLQH--ATTIY---LHHAIADFAEALAS  149 (477)
Q Consensus        76 ~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lG-h~~p~v~~Av~~~l~~~~~--~~~~~---~~~~~~~l~~~La~  149 (477)
                      ++.|+.+.+++|.+++ .+|+.||||.++..   +| |++|++.+++.++++....  ....+   ..+...++++.|++
T Consensus        20 ~~~~~~~~~~~g~~~~-~~g~~~id~~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~   95 (384)
T 1bs0_A           20 LRRRYPVAQGAGRWLV-ADDRQYLNFSSNDY---LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAE   95 (384)
T ss_dssp             CCCCCCCSBCSSSEEE-ETTEEEEECSCCCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHH
T ss_pred             ccccccccCCCCceEE-ECCceEEEeeccCc---cCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHH
Confidence            4567888999999999 79999999998743   78 5899999999999976322  11122   34778899999999


Q ss_pred             hCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCC
Q 011777          150 KMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSF  229 (477)
Q Consensus       150 ~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (477)
                      +++.  +..++++||++|++.+++.+   .++.+.|++...+|+.....+...            |...+.+|.      
T Consensus        96 ~~g~--~~~i~~~sGt~a~~~~~~~~---~~~gd~v~~~~~~~~~~~~~~~~~------------g~~~~~~~~------  152 (384)
T 1bs0_A           96 WLGY--SRALLFISGFAANQAVIAAM---MAKEDRIAADRLSHASLLEAASLS------------PSQLRRFAH------  152 (384)
T ss_dssp             HHTC--SEEEEESCHHHHHHHHHHHH---CCTTCEEEEETTCCHHHHHHHHTS------------SSEEEEECT------
T ss_pred             HhCC--CcEEEeCCcHHHHHHHHHHh---CCCCcEEEEcccccHHHHHHHHHc------------CCCEEEeCC------
Confidence            9865  46788888999999999865   233344555556666544443332            222222221      


Q ss_pred             CCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-Cc-cCCCCCCccc
Q 011777          230 GSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GF-GRTGSHYWGF  307 (477)
Q Consensus       230 ~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gf-gr~G~~~~~~  307 (477)
                      . |    .++++++++... +++++|+++++++++|.+.+    +++|.++|++||+++|+||+|. |+ +++| ..+ .
T Consensus       153 ~-d----~~~l~~~l~~~~-~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~-~  220 (384)
T 1bs0_A          153 N-D----VTHLARLLASPC-PGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQG-RGS-C  220 (384)
T ss_dssp             T-C----HHHHHHHHHSCC-SSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGG-CCH-H
T ss_pred             C-C----HHHHHHHHHhcC-CCCeEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCC-Cch-H
Confidence            1 1    478888887322 24789999989999998776    8999999999999999999996 32 4445 222 2


Q ss_pred             cccCCCccee--eecccccCccceEEEEeCHHHHHhhccc--ccccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHH
Q 011777          308 ETQGVIPDIV--TMAKGIGNGLPLGAVVTTPEIANVMAQK--IQFNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADV  380 (477)
Q Consensus       308 ~~~gv~pDiv--t~sK~lg~G~pig~v~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~  380 (477)
                      +.++..+|++  ++||.++.  +.|++++++++++.+...  .+..+.+.|++.++++.++++.+++   ++..++++++
T Consensus       221 ~~~~~~~di~~~s~sK~~~~--~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~  298 (384)
T 1bs0_A          221 WLQKVKPELLVVTFGKGFGV--SGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAAL  298 (384)
T ss_dssp             HHTTCCCSEEEEESSSTTSS--CCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             HhcCCCCcEEEeeccchhhc--cCcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            4556678888  89999984  339999999998877653  2334457899999999999988752   3566777777


Q ss_pred             HHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC-----CCEEEEeCC
Q 011777          381 GSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH-----GNVFRIKPP  455 (477)
Q Consensus       381 ~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-----~~~iRi~p~  455 (477)
                      .+++.+.|+++    +. ....+.|.++++.+.        ......++.+.|.++||.+.++..+     .+++||+++
T Consensus       299 ~~~l~~~L~~~----g~-~~~~~~~~~~~~~~~--------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~  365 (384)
T 1bs0_A          299 ITRFRAGVQDL----PF-TLADSCSAIQPLIVG--------DNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLT  365 (384)
T ss_dssp             HHHHHHHHTTS----SC-EECSCCSSBCCEEEE--------SHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCC
T ss_pred             HHHHHHHHHhc----CC-cccCCCCCEEEEEeC--------CHHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEc
Confidence            77777777653    32 112356778788773        2234567889999999999887432     368999999


Q ss_pred             CCCcHHHHHHHHHHHHHH
Q 011777          456 MCFTKDDADFLVDALDYS  473 (477)
Q Consensus       456 ~~~t~e~i~~~l~~l~~~  473 (477)
                      ..++++++++++++|+++
T Consensus       366 ~~~~~~~i~~~~~~l~~~  383 (384)
T 1bs0_A          366 AAHEMQDIDRLLEVLHGN  383 (384)
T ss_dssp             TTCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            888999999999999875

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=100.00  E-value=2.8e-33  Score=282.65  Aligned_cols=354  Identities=14%  Similarity=0.080  Sum_probs=244.9

Q ss_pred             eeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccc-cccCChHHHHHHHHHHhhCCC---CC
Q 011777           80 LNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT-TIYLHHAIADFAEALASKMPG---NL  155 (477)
Q Consensus        80 ~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~-~~~~~~~~~~l~~~La~~~~~---~~  155 (477)
                      +....+.+.+++|.+|+.+|||.+|..  .++ .+|+|.+++.++++...++. ..+..+.+.++++.+.+.++.   +.
T Consensus        14 ~~~~~~~~~~~~~~~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~   90 (396)
T 3jtx_A           14 FARLHEAMQGISAPEGMEAVPLHIGEP--KHP-TPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDA   90 (396)
T ss_dssp             HHHHHHHTTTCCCCTTCCCEECSCCSC--CSC-CCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCT
T ss_pred             HHHHHHHHHhhhhccCCCeEEeCCcCC--CCC-CCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCC
Confidence            434456777788999999999998874  344 68999999999886543222 223456677888888776653   36


Q ss_pred             C-EEEEeCChHHHHHHHHHHHHhccC---CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCC
Q 011777          156 K-VVYFVNSGTEANELAMLMARLSTG---NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGS  231 (477)
Q Consensus       156 ~-~v~~~~sGseA~~~Al~~ar~~~~---~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (477)
                      + +|++|+||++|++.+++.+....+   ++.|++..++||++.......+.           .+..++.+   ...+..
T Consensus        91 ~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~---~~g~~~  156 (396)
T 3jtx_A           91 DNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGG-----------EIHFANCP---APSFNP  156 (396)
T ss_dssp             TTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTC-----------EEEEEECC---TTTCCC
T ss_pred             CCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCC-----------EEEEeecC---CCCCcc
Confidence            7 899999999999999997754211   26899999999988665443322           11222220   111111


Q ss_pred             CHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccc---
Q 011777          232 DAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE---  308 (477)
Q Consensus       232 ~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~---  308 (477)
                      |    +++++++++    .++++|+++..+|++|. .++.+.+++|.++|++||+++|+||+|++|.++|..+++..   
T Consensus       157 d----~~~l~~~~~----~~~~~v~l~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~  227 (396)
T 3jtx_A          157 D----WRSISEEVW----KRTKLVFVCSPNNPSGS-VLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAA  227 (396)
T ss_dssp             C----GGGSCHHHH----HTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHH
T ss_pred             C----HHHHHHhhc----cCcEEEEEECCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhh
Confidence            1    356777776    25677776666777775 45777799999999999999999999999988763233321   


Q ss_pred             -----ccCCCcceeeeccccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 011777          309 -----TQGVIPDIVTMAKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGS  382 (477)
Q Consensus       309 -----~~gv~pDivt~sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~  382 (477)
                           ..+..+++.++||.++ +|+|+||+++++++++.+....+..+++.|+++++++.++|+.   ++..++.++..+
T Consensus       228 ~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~  304 (396)
T 3jtx_A          228 AQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDD---EQHVIDNRRLYQ  304 (396)
T ss_dssp             HHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHC---CHHHHHHHHHHH
T ss_pred             hhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence                 1456677789999987 5899999999999999887766667888999999999999874   333333444434


Q ss_pred             HHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCC----------CCCEEE
Q 011777          383 HLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGL----------HGNVFR  451 (477)
Q Consensus       383 ~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~----------~~~~iR  451 (477)
                      ..++.+.+...++..+ .....|+++++++..         .....+.+.|+ ++||.+.++..          ..+++|
T Consensus       305 ~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iR  374 (396)
T 3jtx_A          305 EKFERVIPILQQVFDV-KLPDASFYIWLKVPD---------GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVR  374 (396)
T ss_dssp             HHHHHHHHHHTTTSCC-CCCSSSSEEEEECTT---------SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEE
T ss_pred             HHHHHHHHHHHhcCCc-cCCCeeEEEEEECCC---------CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEE
Confidence            4444443333332111 123347788887732         01346777775 56999988742          247999


Q ss_pred             EeCCCCCcHHHHHHHHHHHHHHH
Q 011777          452 IKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       452 i~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      |+++.  +++++++++++|++++
T Consensus       375 is~~~--~~~~i~~~l~~l~~~l  395 (396)
T 3jtx_A          375 IALVA--DVATCVKAAEDIVSLY  395 (396)
T ss_dssp             EECCS--CHHHHHHHHHHHHHHC
T ss_pred             EEEcC--CHHHHHHHHHHHHHHh
Confidence            98664  9999999999999875

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=2.1e-33  Score=286.77  Aligned_cols=349  Identities=13%  Similarity=0.029  Sum_probs=239.3

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-----ccccccCChHHHHHHHHHHhhCC---CCCCEEEEeCChHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-----HATTIYLHHAIADFAEALASKMP---GNLKVVYFVNSGTE  166 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-----~~~~~~~~~~~~~l~~~La~~~~---~~~~~v~~~~sGse  166 (477)
                      ++.+|||.+|.+.. .||++|++.+++.++++...     +....+..+.+.++++.+.+.++   .+.++|++++||++
T Consensus        42 ~~~~idl~~g~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~  120 (425)
T 1vp4_A           42 DKDAISFGGGVPDP-ETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQ  120 (425)
T ss_dssp             STTCEECCCCSCCG-GGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHH
T ss_pred             CCCceeCCCCCCCc-ccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHH
Confidence            56799999988653 58899999999999987632     11111223445555555544425   45678999999999


Q ss_pred             HHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777          167 ANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF  246 (477)
Q Consensus       167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~  246 (477)
                      |++.+++...  .+++.|++.+++||++.......+.           .+..++...  . .++      +++|+++++.
T Consensus       121 al~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~g~-----------~~~~v~~~~--~-~~d------~~~l~~~l~~  178 (425)
T 1vp4_A          121 ALDLIGKLFL--DDESYCVLDDPAYLGAINAFRQYLA-----------NFVVVPLED--D-GMD------LNVLERKLSE  178 (425)
T ss_dssp             HHHHHHHHHC--CTTCEEEEEESCCHHHHHHHHTTTC-----------EEEEEEEET--T-EEC------HHHHHHHHHH
T ss_pred             HHHHHHHHhC--CCCCEEEEeCCCcHHHHHHHHHcCC-----------EEEEeccCC--C-CCC------HHHHHHHHHh
Confidence            9999998663  3567899999999997665433221           111121110  0 111      5778887763


Q ss_pred             c----CCCCeeEEE-ecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccc---cCCCcceee
Q 011777          247 G----TSGKVAGFI-AETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET---QGVIPDIVT  318 (477)
Q Consensus       247 ~----~~~~~a~vi-~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~---~gv~pDivt  318 (477)
                      .    +..++++|+ +...++++|. .++.+++++|.++|++||+++|+||+|++|.++|..+..+..   .+....+.+
T Consensus       179 ~~~~~~~~~~~~v~~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s  257 (425)
T 1vp4_A          179 FDKNGKIKQVKFIYVVSNFHNPAGV-TTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNT  257 (425)
T ss_dssp             HHHTTCGGGEEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEE
T ss_pred             hhhcccCCCceEEEECCCCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEec
Confidence            1    012577774 4456677775 467889999999999999999999999999877632223322   233344568


Q ss_pred             ecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch----hhHHHHHHHHHHHHHHHHHHHHHh
Q 011777          319 MAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK----ERRQAHCADVGSHLLGRLRTLQER  394 (477)
Q Consensus       319 ~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~----~~~~~~~~~~~~~l~~~L~~l~~~  394 (477)
                      +||.+++|+|+||+++++++++.+.......+++.|+++++++.++|+....    ++..++++++.+++.+.|++....
T Consensus       258 ~sK~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  337 (425)
T 1vp4_A          258 FSKVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSD  337 (425)
T ss_dssp             STTTTCGGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             cccccccccceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999998999999999999998887655556778899999999999986422    234455556666666666554211


Q ss_pred             CCCceee-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC------CCEEEEeCCCCCcHHHHHHHH
Q 011777          395 HDIIGDV-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH------GNVFRIKPPMCFTKDDADFLV  467 (477)
Q Consensus       395 ~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~------~~~iRi~p~~~~t~e~i~~~l  467 (477)
                      ++.+..+ +..|+++++++....        ...++.+.|.++||++.++..+      .+++||+++.. +++++++++
T Consensus       338 ~~g~~~~~~~~g~~~~~~~~~~~--------~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~e~i~~~l  408 (425)
T 1vp4_A          338 IPGVKWVKSEGGLFIWLTLPEGF--------DTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLP-PDEKIVEGI  408 (425)
T ss_dssp             STTCEECCCSBSSEEEEECCTTC--------CTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSS-CHHHHHHHH
T ss_pred             CCceEEecCCccEEEEEEcCCCC--------CHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCC-CHHHHHHHH
Confidence            1123322 445778888874211        1235778888889999887432      47899998774 899999999


Q ss_pred             HHHHHHHhh
Q 011777          468 DALDYSMSK  476 (477)
Q Consensus       468 ~~l~~~l~~  476 (477)
                      ++|++++++
T Consensus       409 ~~l~~~l~~  417 (425)
T 1vp4_A          409 KRLREVVLE  417 (425)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=100.00  E-value=1.1e-32  Score=277.90  Aligned_cols=341  Identities=15%  Similarity=0.076  Sum_probs=228.7

Q ss_pred             CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc--cccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHHH
Q 011777           93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH--ATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEAN  168 (477)
Q Consensus        93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~--~~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA~  168 (477)
                      .+|++||||.+|...  ++. +|+|.+++.+++++...  ....+..+.++.+++.+.+.++  .+.++|+||+||++|+
T Consensus        28 ~~g~~~i~l~~g~~~--~~~-~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al  104 (391)
T 3h14_A           28 EAGRRIIHMEVGQPG--TGA-PRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGF  104 (391)
T ss_dssp             HTTCCCEECCCSSCS--SCS-CHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHH
T ss_pred             hcCCCeEEccCCCCC--CCC-CHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHH
Confidence            478999999988753  443 78999999998875321  1111223445555555554433  4567899999999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      +.+++...  .+++.|++..++|++........             |...+.+|......+..|    ++++++.     
T Consensus       105 ~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~-----  160 (391)
T 3h14_A          105 LLAFTALF--DSGDRVGIGAPGYPSYRQILRAL-------------GLVPVDLPTAPENRLQPV----PADFAGL-----  160 (391)
T ss_dssp             HHHHHHHC--CTTCEEEEEESCCHHHHHHHHHT-------------TCEEEEEECCGGGTTSCC----HHHHTTS-----
T ss_pred             HHHHHHhc--CCCCEEEEcCCCCccHHHHHHHc-------------CCEEEEeecCcccCCCCC----HHHHHhc-----
Confidence            99998764  35678999999999876544332             222222222111112111    3444432     


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cccCCCcceeeeccccc-Cc
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQGVIPDIVTMAKGIG-NG  326 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~gv~pDivt~sK~lg-~G  326 (477)
                        ++++|+++..++++|. ..+.+.+++|.++|++||+++|+||+|++|.++| ..... +..+....+.++||.+| +|
T Consensus       161 --~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~G  236 (391)
T 3h14_A          161 --DLAGLMVASPANPTGT-MLDHAAMGALIEAAQAQGASFISDEIYHGIEYEA-KAVTALELTDECYVINSFSKYFSMTG  236 (391)
T ss_dssp             --CCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CCCCGGGTCSSSEEEEESSSTTCCTT
T ss_pred             --CCeEEEECCCCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEECcchhcccCC-CCcChhhcCCCEEEEEechhccCCcc
Confidence              4566777677778885 4577889999999999999999999999998877 33322 33233344458999998 79


Q ss_pred             cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc-c
Q 011777          327 LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGR-G  405 (477)
Q Consensus       327 ~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-g  405 (477)
                      +|+||+++++++++.+.......+++.|+++++++.++++   .++..++.++..+.+++.+.+...+++.....++. |
T Consensus       237 ~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  313 (391)
T 3h14_A          237 WRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALD---CDAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGA  313 (391)
T ss_dssp             SCCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBT
T ss_pred             ceeEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCee
Confidence            9999999999999888776667788999999999988887   22333444444444444444433334444333444 4


Q ss_pred             eeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccCCC-----CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          406 LMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGGLH-----GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       406 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~-----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +++++++....       ....++.+.|+++ ||.+.++..+     .+++||+++.  ++++|++++++|++++++
T Consensus       314 ~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~  381 (391)
T 3h14_A          314 FYVYADVSDLT-------DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR--ATADIEEGLDRLEAFMQA  381 (391)
T ss_dssp             TEEEEECTTTC-------SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCccC-------CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence            66677663210       1245677787775 9999987433     4689998775  889999999999998864

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=100.00  E-value=7.8e-33  Score=276.46  Aligned_cols=333  Identities=14%  Similarity=0.072  Sum_probs=231.0

Q ss_pred             EeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHH
Q 011777           91 FDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANEL  170 (477)
Q Consensus        91 ~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~  170 (477)
                      ++.||+++|||.++.  +++| .+|++.+++.++++...    .|..+...++++.|+++++.+.++|+|++||++|++.
T Consensus        19 ~~~~~~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~----~y~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~   91 (364)
T 1lc5_A           19 LGISPDQLLDFSANI--NPLG-MPVSVKRALIDNLDCIE----RYPDADYFHLHQALARHHQVPASWILAGNGETESIFT   91 (364)
T ss_dssp             HTSCGGGSEECSSCC--CTTC-CCHHHHHHHHHTGGGGG----SCCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHH
T ss_pred             cCCCccceEEecccc--CCCC-CCHHHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHH
Confidence            356888999998877  3577 78999999999876522    2334446788899999887666789999999999999


Q ss_pred             HHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCC
Q 011777          171 AMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG  250 (477)
Q Consensus       171 Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~  250 (477)
                      +++.+   .+ ++|++..++||++.......+.           .+..++..  ....+..     ++++.+.+.    +
T Consensus        92 ~~~~~---~g-d~vl~~~p~y~~~~~~~~~~g~-----------~~~~v~~~--~~~~~~~-----l~~~~~~~~----~  145 (364)
T 1lc5_A           92 VASGL---KP-RRAMIVTPGFAEYGRALAQSGC-----------EIRRWSLR--EADGWQL-----TDAILEALT----P  145 (364)
T ss_dssp             HHHHH---CC-SEEEEEESCCTHHHHHHHHTTC-----------EEEEEECC--GGGTTCC-----CTTHHHHCC----T
T ss_pred             HHHHc---CC-CeEEEeCCCcHHHHHHHHHcCC-----------eEEEEeCC--cccccch-----hHHHHHhcc----C
Confidence            99977   34 8899999999997665443321           11112111  1001110     122222222    3


Q ss_pred             CeeEEE-ecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cccCCCcceeeeccccc-Ccc
Q 011777          251 KVAGFI-AETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQGVIPDIVTMAKGIG-NGL  327 (477)
Q Consensus       251 ~~a~vi-~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~gv~pDivt~sK~lg-~G~  327 (477)
                      ++++|+ ++| ++++|. .++.+++++|.++|++||+++|+||+|++|++++..+... +..+....+.++||.++ +|+
T Consensus       146 ~~~~v~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~  223 (364)
T 1lc5_A          146 DLDCLFLCTP-NNPTGL-LPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGL  223 (364)
T ss_dssp             TCCEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTT
T ss_pred             CCCEEEEeCC-CCCCCC-CCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCcc
Confidence            445444 566 666674 4688999999999999999999999999987654222222 33444455668999999 799


Q ss_pred             ceEEEE-eCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccce
Q 011777          328 PLGAVV-TTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGL  406 (477)
Q Consensus       328 pig~v~-~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~  406 (477)
                      |+||++ +++++++.+....  .+++.|+++++++.++|+.   .++.++.++..+..++.+.+...+++.+...++.|.
T Consensus       224 r~G~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~  298 (364)
T 1lc5_A          224 RLGYLVNSDDAAMARMRRQQ--MPWSVNALAALAGEVALQD---SAWQQATWHWLREEGARFYQALCQLPLLTVYPGRAN  298 (364)
T ss_dssp             CCEEEECCCHHHHHHHHHHS--CTTCSCHHHHHHHHHGGGC---HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSSS
T ss_pred             ceEEEEECCHHHHHHHHHhC--CCCCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCCCe
Confidence            999999 9999988876533  4678899999999888864   234444444444444555444444544444567788


Q ss_pred             eEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          407 MVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       407 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ++++++..+          ...+.+.|+++||.+.++..+    .+++||++.   +++|++++++.|++++++
T Consensus       299 ~~~~~~~~~----------~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~~  359 (364)
T 1lc5_A          299 YLLLRCERE----------DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR---SAAQNERLLAALRNVLTG  359 (364)
T ss_dssp             EEEEEESCT----------TCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHC--
T ss_pred             EEEEECCCc----------HHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEeC---CHHHHHHHHHHHHHHhhc
Confidence            888876321          225778888999999987543    479999743   689999999999988764

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=100.00  E-value=3.4e-32  Score=270.50  Aligned_cols=338  Identities=14%  Similarity=0.086  Sum_probs=243.6

Q ss_pred             eeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCCh
Q 011777           85 GKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSG  164 (477)
Q Consensus        85 g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sG  164 (477)
                      .+|.++++.+|+.+|||.++.  ++++ .+|+|++++.+++...    ..|+.+...+++++++++++.+.+++++++||
T Consensus         5 ~~~~~~~~~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~   77 (354)
T 3ly1_A            5 PESAAFTAPSTDNPIRINFNE--NPLG-MSPKAQAAARDAVVKA----NRYAKNEILMLGNKLAAHHQVEAPSILLTAGS   77 (354)
T ss_dssp             ----CCCCCCSSSCEECSSCC--CSSC-CCHHHHHHHHHTGGGT----TSCCHHHHHHHHHHHHHHTTSCGGGEEEESHH
T ss_pred             cccccccCCCCCceEEccCCC--CCCC-CCHHHHHHHHHHHhhC----cCCCCCchHHHHHHHHHHhCCChHHEEEeCCh
Confidence            467788899999999999876  3555 7899999999987652    23455677899999999998777899999999


Q ss_pred             HHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHH
Q 011777          165 TEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHI  244 (477)
Q Consensus       165 seA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i  244 (477)
                      ++|++.+++...  .+++.|++..++|+++.......             |...+.+|......++      ++++++.+
T Consensus        78 ~~a~~~~~~~l~--~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~d------~~~l~~~l  136 (354)
T 3ly1_A           78 SEGIRAAIEAYA--SLEAQLVIPELTYGDGEHFAKIA-------------GMKVTKVKMLDNWAFD------IEGLKAAV  136 (354)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEEESSSCTHHHHHHHHT-------------TCEEEEECCCTTSCCC------HHHHHHHH
T ss_pred             HHHHHHHHHHHh--CCCCeEEECCCCchHHHHHHHHc-------------CCEEEEecCCCCCCCC------HHHHHHHh
Confidence            999999999763  35678999999999875544332             2222222221111222      57888888


Q ss_pred             hccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc-c---ccc-CCCcceeee
Q 011777          245 DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG-F---ETQ-GVIPDIVTM  319 (477)
Q Consensus       245 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~-~---~~~-gv~pDivt~  319 (477)
                      +.  ..++++|+++..++++|.+. +.+.+++|.++| +||+++|+||+|++|.+.+ .... .   +.. +....+.++
T Consensus       137 ~~--~~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~  211 (354)
T 3ly1_A          137 AA--YSGPSIVYLVNPNNPTGTIT-PADVIEPWIASK-PANTMFIVDEAYAEFVNDP-RFRSISPMITQGAENIILLKTF  211 (354)
T ss_dssp             HT--CSSCEEEEEESSCTTTCCCC-CHHHHHHHHHTC-CTTEEEEEECTTGGGCCCT-TCCCSHHHHHTTCSSEEEEEES
T ss_pred             cc--CCCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhC-CCCeEEEEeccHHHhcccc-ccCCHHHHhhhcCCCEEEEeeC
Confidence            62  13677777777778888544 666778888877 7999999999999998776 2221 1   222 444556689


Q ss_pred             ccccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 011777          320 AKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDI  397 (477)
Q Consensus       320 sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~  397 (477)
                      ||.+| +|+|+|++++++++++.+.....  .++.|+++++++.++|+..+. ++..++++++.+++.+.|+++    + 
T Consensus       212 sK~~g~~G~r~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~-  284 (354)
T 3ly1_A          212 SKIHAMAGMRVGYAVAHPTVIALMGRYVA--GEKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL----K-  284 (354)
T ss_dssp             SSTTCCGGGCCEEEECCHHHHHHHGGGTT--CSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH----T-
T ss_pred             hhhccChhhhheeeecCHHHHHHHHHhcC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----C-
Confidence            99999 79999999999999998876543  378899999999998874321 334455555666666666554    2 


Q ss_pred             ceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--CCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          398 IGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--HGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       398 ~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      +...++.|.++++++..          ...++.+.|.++||++. +..  ..+++||++.   +++|+++++++|+++++
T Consensus       285 ~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~v~-g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~  350 (354)
T 3ly1_A          285 LPYLPSEGNFVFHQLVV----------PLKDYQTHMADAGVLIG-RAFPPADNWCRISLG---TPQEMQWVADTMREFRK  350 (354)
T ss_dssp             CCBCCCCSSEEEEECSS----------CHHHHHHHHHHTTEECC-CCCTTCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred             CeECCCCceEEEEECCC----------CHHHHHHHHHHCCEEEe-ecCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHH
Confidence            23345678888887632          14578888999999988 422  3579999754   89999999999999886


Q ss_pred             h
Q 011777          476 K  476 (477)
Q Consensus       476 ~  476 (477)
                      +
T Consensus       351 ~  351 (354)
T 3ly1_A          351 K  351 (354)
T ss_dssp             T
T ss_pred             h
Confidence            4

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=100.00  E-value=7.6e-33  Score=277.49  Aligned_cols=334  Identities=11%  Similarity=0.019  Sum_probs=234.8

Q ss_pred             CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc-ccCChHHHHHHHHHHhhCCC--CCCEEEEeCChHHHHH
Q 011777           93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT-IYLHHAIADFAEALASKMPG--NLKVVYFVNSGTEANE  169 (477)
Q Consensus        93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~-~~~~~~~~~l~~~La~~~~~--~~~~v~~~~sGseA~~  169 (477)
                      .+| .+|||.+|..  .++ .+|+|.+++.+++.....+.. .+..+.+.++++.+.+.++.  +.++|+||+||++|++
T Consensus        21 ~~g-~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~   96 (376)
T 3ezs_A           21 PKK-RGLDLGIGEP--QFE-TPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLF   96 (376)
T ss_dssp             CSS-CCCBCSSCCC--CSC-CCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHH
T ss_pred             ccC-CEEEeCCCCC--CCC-CCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHH
Confidence            467 8999998874  455 689999999988744322221 22345566777777665554  5689999999999999


Q ss_pred             HHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCC
Q 011777          170 LAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS  249 (477)
Q Consensus       170 ~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~  249 (477)
                      .+++.+...++++.|++..++||++.......+.             ..+.+|......+.      . ++++.+.    
T Consensus        97 ~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~------~-~l~~~~~----  152 (376)
T 3ezs_A           97 NFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKA-------------KSLLMPLTKENDFT------P-SLNEKEL----  152 (376)
T ss_dssp             HHHHHHTTTCSSCEEEEEESCCTHHHHHHHHTTC-------------EEEEEECCGGGTSC------C-CCCHHHH----
T ss_pred             HHHHHHcCCCCCCEEEEecCCcHhHHHHHHHcCC-------------EEEEcccCCCCCcc------h-hHHhhhc----
Confidence            9999875433378999999999987665443321             11221111111111      0 3444444    


Q ss_pred             CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-c--------ccCCCcceeeec
Q 011777          250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-E--------TQGVIPDIVTMA  320 (477)
Q Consensus       250 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~--------~~gv~pDivt~s  320 (477)
                      .++++|+++..++++|. .++.+.+++|.++|++||+++|+||+|++|.++| ..... +        ..+..+.+.++|
T Consensus       153 ~~~~~v~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~s  230 (376)
T 3ezs_A          153 QEVDLVILNSPNNPTGR-TLSLEELISWVKLALKHDFILINDECYSEIYENT-PPPSLLEACMLAGNEAFKNVLVIHSLS  230 (376)
T ss_dssp             HHCSEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSS-CCCCHHHHHHHTTCTTCTTEEEEEEST
T ss_pred             cCCCEEEEcCCCCCcCC-CCCHHHHHHHHHHHHHcCcEEEEEccchhhccCC-CCCCHHHccccccccccCcEEEEecch
Confidence            13455555555777774 5578889999999999999999999999998877 44433 2        345666777999


Q ss_pred             cccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCce
Q 011777          321 KGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIG  399 (477)
Q Consensus       321 K~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~  399 (477)
                      |.+| +|+|+||+++++++++.+....+..+++.|+++++++.++|+.   ++..++.++..+..++.+.+...  +. .
T Consensus       231 K~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~--~~-~  304 (376)
T 3ezs_A          231 KRSSAPGLRSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLD---DRHAEFFRNIYANNLKLARKIFK--NT-L  304 (376)
T ss_dssp             TTTTCGGGCCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHC---SHHHHHHHHHHHHHHHHHHHHST--TC-C
T ss_pred             hccCCccceeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHhc--CC-C
Confidence            9997 6999999999999999888766667889999999999999874   23334444444444444444332  22 2


Q ss_pred             eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHH-cCceeeccCC------CCCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777          400 DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGGL------HGNVFRIKPPMCFTKDDADFLVDALDY  472 (477)
Q Consensus       400 ~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~------~~~~iRi~p~~~~t~e~i~~~l~~l~~  472 (477)
                       .+..|+++++++.           ...++.+.|++ +||++.++..      ..+++||+++  .+++++++++++|++
T Consensus       305 -~~~~~~~~~~~~~-----------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~  370 (376)
T 3ezs_A          305 -IYPYSFYVYLPVQ-----------NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALV--YDTPLLEKPLEIIET  370 (376)
T ss_dssp             -CCSBSSEEEEECS-----------CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred             -CCCcceEEEEECC-----------CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEc--CCHHHHHHHHHHHHH
Confidence             4566888888763           14567888887 8999988633      3479999876  499999999999999


Q ss_pred             HHhh
Q 011777          473 SMSK  476 (477)
Q Consensus       473 ~l~~  476 (477)
                      ++++
T Consensus       371 ~l~~  374 (376)
T 3ezs_A          371 YREN  374 (376)
T ss_dssp             HHCC
T ss_pred             HHHh
Confidence            9865

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=100.00  E-value=9.5e-32  Score=268.71  Aligned_cols=331  Identities=14%  Similarity=0.058  Sum_probs=240.9

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCC-CCCEEEEeCChHHHHHHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPG-NLKVVYFVNSGTEANELAML  173 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~-~~~~v~~~~sGseA~~~Al~  173 (477)
                      .+.+|||.++.  ++++ .+|+|.+++.+++....  ...|..+...+++++++++++. +.++|+|++||++|++.+++
T Consensus        29 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~--~~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~  103 (367)
T 3euc_A           29 SHGLVKLDAME--NPYR-LPPALRSELAARLGEVA--LNRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLAL  103 (367)
T ss_dssp             CTTCEECCSSC--CCCC-CCHHHHHHHHHHHHHHH--TTCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHH
T ss_pred             CCCeeEccCCC--CCCC-CCHHHHHHHHHHhhhhh--hhcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHH
Confidence            46789998877  3454 68999999999987531  2234555678999999999876 56799999999999999998


Q ss_pred             HHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCee
Q 011777          174 MARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA  253 (477)
Q Consensus       174 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a  253 (477)
                      ...  .++++|++..++|+++.......+.           .+..++...    .+..|    +++++++++.   .+++
T Consensus       104 ~~~--~~gd~Vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~~----~~~~d----~~~l~~~l~~---~~~~  159 (367)
T 3euc_A          104 AAA--RPGAKVMAPVPGFVMYAMSAQFAGL-----------EFVGVPLRA----DFTLD----RGAMLAAMAE---HQPA  159 (367)
T ss_dssp             HTC--CTTCEEEEEESCSCCSCHHHHTTTC-----------EEEEEECCT----TSCCC----HHHHHHHHHH---HCCS
T ss_pred             HHc--CCCCEEEEcCCCHHHHHHHHHHcCC-----------eEEEecCCC----CCCCC----HHHHHHHhhc---cCCC
Confidence            653  3567899999999988665443321           122222211    11112    5788888872   2567


Q ss_pred             EEEecccCCCCCeeeCCchhHHHHHHHHHHh--CcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEE
Q 011777          254 GFIAETIQGVGGAVELAPGYLKLVYDIVRKA--GGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGA  331 (477)
Q Consensus       254 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~--gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~  331 (477)
                      +|+++..++++|. ..+.+.+++|.++|++|  |+++|+||+|++|+..+ .....+..+..+++.++||...+|+|+||
T Consensus       160 ~v~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~G~r~G~  237 (367)
T 3euc_A          160 IVYLAYPNNPTGN-LFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES-WMSRLTDFGNLLVMRTVSKLGLAGIRLGY  237 (367)
T ss_dssp             EEEEESSCTTTCC-CCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC-SGGGGGTCTTEEEEEECCCTTSCSCCEEE
T ss_pred             EEEEcCCCCCCCC-CCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc-hHHHHhhCCCEEEEecchhhcccccCcee
Confidence            7777777888885 45778899999999999  99999999999987554 33344555666777899999336899999


Q ss_pred             EEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEE
Q 011777          332 VVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGME  411 (477)
Q Consensus       332 v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~  411 (477)
                      +++++++++.+....  .+++.|+++++++.++|+.   +++.++.++....+++.+.+...+++.+...++.|.++++.
T Consensus       238 ~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~  312 (367)
T 3euc_A          238 VAGDPQWLEQLDKVR--PPYNVNVLTEATALFALEH---VAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPSAANFLLAR  312 (367)
T ss_dssp             EEECHHHHHHHGGGC--CSSCCCHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCCSSSEEEEE
T ss_pred             eeeCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCeEEEEE
Confidence            999999998887543  4678899999999999975   23333344444444444444444454444556678888877


Q ss_pred             EeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC----CCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          412 LVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL----HGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      +.           ...++.+.|.++||++.++..    ..+++||+++   +++|+++++++|+++++
T Consensus       313 ~~-----------~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~  366 (367)
T 3euc_A          313 VP-----------DAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS---TPEENAQFLEAFAASLQ  366 (367)
T ss_dssp             CS-----------CHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred             CC-----------CHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence            62           145688889999999988753    2479999754   89999999999999875

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=1.2e-32  Score=276.24  Aligned_cols=336  Identities=14%  Similarity=0.046  Sum_probs=232.7

Q ss_pred             CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCC-hHHHHHHHHHHhhC----CCC--CC-EEEEeCCh
Q 011777           93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH-HAIADFAEALASKM----PGN--LK-VVYFVNSG  164 (477)
Q Consensus        93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~-~~~~~l~~~La~~~----~~~--~~-~v~~~~sG  164 (477)
                      .+|+++|||.+|..  .+| .+|++.+++.+++++..  ...|.. ....++++.+++++    +.+  .+ +|+|++||
T Consensus        22 ~~g~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~--~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~   96 (376)
T 2dou_A           22 ERGVGLIDLSIGST--DLP-PPEAPLKALAEALNDPT--TYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGS   96 (376)
T ss_dssp             HTTCCCEECSSCCC--CCC-CCHHHHHHHHHHTTCGG--GSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSH
T ss_pred             ccCCCEEeccCCCC--CCC-CCHHHHHHHHHHHhCCC--cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCc
Confidence            46888999998875  577 48999999999886421  123443 24566667666655    543  34 89999999


Q ss_pred             HHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHH
Q 011777          165 TEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHI  244 (477)
Q Consensus       165 seA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i  244 (477)
                      ++|++.+++...  .++++|++.+++||++.......+.           .+..++.++    .+..|    ++++++.+
T Consensus        97 ~~a~~~~~~~l~--~~gd~vl~~~p~y~~~~~~~~~~g~-----------~~~~~~~~~----~~~~d----~~~l~~~l  155 (376)
T 2dou_A           97 QEGLAHLLLALT--EPEDLLLLPEVAYPSYFGAARVASL-----------RTFLIPLRE----DGLAD----LKAVPEGV  155 (376)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEEESSCCHHHHHHHHHTTC-----------EEEEECBCT----TSSBC----GGGSCHHH
T ss_pred             HHHHHHHHHHhc--CCCCEEEECCCCcHhHHHHHHHcCC-----------EEEEeeCCC----CCCCC----HHHHHHhh
Confidence            999999998763  2467899999999998665443321           111222111    11111    35666666


Q ss_pred             hccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc-ccc---cCCCcceeeec
Q 011777          245 DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG-FET---QGVIPDIVTMA  320 (477)
Q Consensus       245 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~-~~~---~gv~pDivt~s  320 (477)
                      +    +++++|+++..++++|.+ ++.+++++|.++|++||+++|+||+|++|.++| .... .+.   .+...++.++|
T Consensus       156 ~----~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~s  229 (376)
T 2dou_A          156 W----REAKVLLLNYPNNPTGAV-ADWGYFEEALGLARKHGLWLIHDNPYVDQVYEG-EAPSPLALPGAKERVVELFSLS  229 (376)
T ss_dssp             H----HHEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSS-CCCCGGGSTTGGGTEEEEEEHH
T ss_pred             c----cCceEEEECCCCCCcCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCcEEEEecch
Confidence            4    356777776557777754 678899999999999999999999999998766 3222 222   23445566899


Q ss_pred             cccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCce
Q 011777          321 KGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIG  399 (477)
Q Consensus       321 K~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~  399 (477)
                      |.++ +|+|+||+++++++++.+.......+++.|+++++++.++|+..  +++.++.++..+..++.+.+...++  +.
T Consensus       230 K~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~--~~  305 (376)
T 2dou_A          230 KSYNLAGFRLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTP--KEVVRGYARVYRERALGMAEALKGV--LS  305 (376)
T ss_dssp             HHHTCGGGCCEEEEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHHHTTT--SE
T ss_pred             hhcCChhheeEEEecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHh--cC
Confidence            9998 69999999999999988876656667788999999999988753  3334444444444444444433333  22


Q ss_pred             eeec-cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          400 DVRG-RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       400 ~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      ..++ .|+++++++...        ....++.+.|+++||++.++..+    .+++||+++.  +++++++++++|++++
T Consensus       306 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~--~~~~i~~~l~~l~~~l  375 (376)
T 2dou_A          306 LLPPRATMYLWGRLPEG--------VDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALVR--PLEELLEAAKRIREAL  375 (376)
T ss_dssp             ECCCCBSSEEEEECCTT--------CCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHTC
T ss_pred             ccCCCeeEEEEEECCCC--------CCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence            2333 466778876321        11356888999999999987433    4799998764  8999999999998865

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-32  Score=282.26  Aligned_cols=345  Identities=14%  Similarity=0.069  Sum_probs=238.1

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhc--c-ccccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL--Q-HATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEAN  168 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~--~-~~~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA~  168 (477)
                      .|+.+|||..|.+  .++ ++|.|.+++.+++++.  . +....+..+.+.++++++.+.++  .+.++|++|+||++|+
T Consensus        55 ~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al  131 (447)
T 3b46_A           55 QGRELINLGQGFF--SYS-PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI  131 (447)
T ss_dssp             TTSCCEECCCCSC--SSC-CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred             cCCCeEEccCCCC--CCC-CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence            4668999998875  455 6899999999998751  1 11111223445666666655544  3346899999999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCC--------cCCCCCCCHHHHHHHH
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDP--------YHGSFGSDAARYAQDL  240 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l  240 (477)
                      +.+++.+.  .+++.|++.+++||++.......+..           +..++....        ....+..|    +++|
T Consensus       132 ~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~-----------~~~v~~~~~~~~~~~~~~~~~~~~d----~~~l  194 (447)
T 3b46_A          132 LSCLMGLL--NAGDEVIVFEPFFDQYIPNIELCGGK-----------VVYVPINPPKELDQRNTRGEEWTID----FEQF  194 (447)
T ss_dssp             HHHHHHHC--CTTCEEEEEESCCTTHHHHHHHTTCE-----------EEEEEEECCGGGGTSCBCSTTSEEC----HHHH
T ss_pred             HHHHHHHc--CCCCEEEEeCCCchhHHHHHHHcCCE-----------EEEEeCCCccccccccccccCcccC----HHHH
Confidence            99999763  35688999999999876644332211           111111000        00011111    4677


Q ss_pred             HHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc---c--cccCCCcc
Q 011777          241 QDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG---F--ETQGVIPD  315 (477)
Q Consensus       241 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~---~--~~~gv~pD  315 (477)
                      ++.++    +++++|++++.+|++|.+ ++++++++|.++|++||++||+||+|++|.++| ....   +  +.++..++
T Consensus       195 ~~~l~----~~~~~v~l~~p~nptG~~-~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~~i~  268 (447)
T 3b46_A          195 EKAIT----SKTKAVIINTPHNPIGKV-FTREELTTLGNICVKHNVVIISDEVYEHLYFTD-SFTRIATLSPEIGQLTLT  268 (447)
T ss_dssp             HTTCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCHHHHTTEEE
T ss_pred             HHhhc----cCCeEEEEeCCCCCCCcc-cCHHHHHHHHHHHHHcCcEEEEeccchhcccCC-CCcCHHHcCCCCCCcEEE
Confidence            77664    467888888878888854 578999999999999999999999999988776 3222   2  13466777


Q ss_pred             eeeeccccc-CccceEEEEe-CHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhh----HHHHHHHHHHHHHHHHH
Q 011777          316 IVTMAKGIG-NGLPLGAVVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKER----RQAHCADVGSHLLGRLR  389 (477)
Q Consensus       316 ivt~sK~lg-~G~pig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~----~~~~~~~~~~~l~~~L~  389 (477)
                      +.++||.++ .|+|+||+++ ++++++.+....+..+++.++++++++.++|+....++    +.++++++.+++.+.|+
T Consensus       269 i~S~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~  348 (447)
T 3b46_A          269 VGSAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFD  348 (447)
T ss_dssp             EEEHHHHTTCTTSCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCchhcCCcchhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999 6999999999 99999888765566788899999999999998764344    44455555556665555


Q ss_pred             HHHHhCCCceeeeccceeEEEEEeeCCCCCCcc----------HHHHHHHHHHHH-HcCceeeccCCC---------CCE
Q 011777          390 TLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA----------KAETAVLFEKLR-ELGVLVGKGGLH---------GNV  449 (477)
Q Consensus       390 ~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~----------~~~~~~~~~~l~-~~Gv~v~~~~~~---------~~~  449 (477)
                      ++    +.....+..|+++++++...   ..|.          .....++.+.|. ++||++.|+..+         .++
T Consensus       349 ~~----g~~~~~~~~g~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~  421 (447)
T 3b46_A          349 EL----GLPYTAPEGTYFVLVDFSKV---KIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENL  421 (447)
T ss_dssp             HH----TCCEECCSBSSEEEEECTTC---CCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTE
T ss_pred             HC----CCeecCCCeeEEEEEecccc---cCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCE
Confidence            54    33222344577888887421   0010          113456777776 589999887432         579


Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          450 FRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       450 iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      +||+++  .++++|++++++|++.
T Consensus       422 iRls~~--~~~e~l~~~~~~l~~~  443 (447)
T 3b46_A          422 LRFAVC--KDDAYLENAVERLKLL  443 (447)
T ss_dssp             EEEECC--SCHHHHHHHHHHGGGG
T ss_pred             EEEEEe--CCHHHHHHHHHHHHHH
Confidence            999876  4899999999999873

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=100.00  E-value=6.4e-36  Score=301.96  Aligned_cols=359  Identities=12%  Similarity=0.080  Sum_probs=242.5

Q ss_pred             eeEEeeeccEEEeCCCC--EEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCC--CCC
Q 011777           80 LNIVEGKMQYLFDENGR--RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMP--GNL  155 (477)
Q Consensus        80 ~~~~~g~G~~~~d~dG~--~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~--~~~  155 (477)
                      ++-.+|+|+++||.+|+  .+|||..+..  .++ .+|++.+++.+++....+.......+.+.++++++.+..+  .+.
T Consensus        13 ~~~~~~~g~~~~d~~g~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~   89 (392)
T 3b1d_A           13 APNRLSHHTYKWKETETDPQLLPAWIADM--DFE-VMPEVKQAIHDYAEQLVYGYTYASDELLQAVLDWEKSEHQYSFDK   89 (392)
Confidence            45568999999999999  9999987764  455 5889999999988653221111123344555555554443  445


Q ss_pred             CEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcC-CCCCCCHH
Q 011777          156 KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYH-GSFGSDAA  234 (477)
Q Consensus       156 ~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  234 (477)
                      ++|++++||++|++.+++.+..  ++++|++..++||++.......+.             ..+.+|.... +.|..   
T Consensus        90 ~~v~~~~g~~~a~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~g~~~~---  151 (392)
T 3b1d_A           90 EDIVFVEGVVPAISIAIQAFTK--EGEAVLINSPVYPPFARSVRLNNR-------------KLVSNSLKEENGLFQI---  151 (392)
Confidence            7899999999999999997643  567899999999998765543321             1111111000 00111   


Q ss_pred             HHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCC---Cccccc--
Q 011777          235 RYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH---YWGFET--  309 (477)
Q Consensus       235 ~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~---~~~~~~--  309 (477)
                       .++++++.++   ..++++|+++..++++|. .++++++++|.++|++||+++|+||+|++|.++|..   ++.++.  
T Consensus       152 -d~~~l~~~l~---~~~~~~v~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~  226 (392)
T 3b1d_A          152 -DFEQLENDIV---ENDVKLYLLCNPHNPGGR-VWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDF  226 (392)
Confidence             1366766664   135667777777777785 467788999999999999999999999999876621   222222  


Q ss_pred             cCCCcceeeeccccc-CccceEEEEeCH-HHHHhhcccccccCC-CCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 011777          310 QGVIPDIVTMAKGIG-NGLPLGAVVTTP-EIANVMAQKIQFNTF-GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLG  386 (477)
Q Consensus       310 ~gv~pDivt~sK~lg-~G~pig~v~~~~-~~~~~~~~~~~~~t~-~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~  386 (477)
                      .+..+++.++||+++ +|+|+||+++++ ++++.+.......++ +.|+++++++.++|+..  +++.+++++..+..++
T Consensus       227 ~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~  304 (392)
T 3b1d_A          227 KDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG--KPWLVALKAVLEENIQ  304 (392)
Confidence            455677889999998 799999999975 488888765554544 46899999999988742  3344444444444444


Q ss_pred             HHHHHHHh-CCCceeeeccceeE-EEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCCc
Q 011777          387 RLRTLQER-HDIIGDVRGRGLMV-GMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCFT  459 (477)
Q Consensus       387 ~L~~l~~~-~~~~~~v~g~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t  459 (477)
                      .|.+...+ ++.+..+++.|.++ |+++...       .....++.+.|+ ++||++.++..+    .+++||+  +..+
T Consensus       305 ~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~  375 (392)
T 3b1d_A          305 FAVEYFAQEAPRLKVMKPQGTYLIWLDFSDY-------GLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLN--IAAP  375 (392)
Confidence            44444333 33344455666655 5666321       112346778886 789999887433    3689996  4457


Q ss_pred             HHHHHHHHHHHHHHHh
Q 011777          460 KDDADFLVDALDYSMS  475 (477)
Q Consensus       460 ~e~i~~~l~~l~~~l~  475 (477)
                      +++|++++++|+++++
T Consensus       376 ~e~i~~~l~~l~~~l~  391 (392)
T 3b1d_A          376 KSLVEEICKRIVCCLP  391 (392)
Confidence            8999999999998875

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=100.00  E-value=2e-32  Score=278.19  Aligned_cols=345  Identities=12%  Similarity=0.056  Sum_probs=232.2

Q ss_pred             CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc---ccccccCChHHHHHHHHHHhhCC--CCC-CEEEEeCChHH
Q 011777           93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ---HATTIYLHHAIADFAEALASKMP--GNL-KVVYFVNSGTE  166 (477)
Q Consensus        93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~---~~~~~~~~~~~~~l~~~La~~~~--~~~-~~v~~~~sGse  166 (477)
                      .+|+++|||.+|..  ++| .+|.+.+++.+++++..   +....+..+.+..+++.+.+..+  .+. ++|++++||++
T Consensus        34 ~~g~~~idl~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~  110 (412)
T 2x5d_A           34 RRGEDIIDLSMGNP--DGP-TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKE  110 (412)
T ss_dssp             HTTCCCEECSSCCC--CSC-CCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHH
T ss_pred             hcCCCEEecCCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHH
Confidence            57889999998874  566 78999999998876531   11111122334444444444334  244 58999999999


Q ss_pred             HHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777          167 ANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF  246 (477)
Q Consensus       167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~  246 (477)
                      |++.+++.+.  .+++.|++..++||++.......+             ...+.+|....    .+....++++++.++ 
T Consensus       111 a~~~~~~~~~--~~gd~Vl~~~p~~~~~~~~~~~~g-------------~~~~~~~~~~~----~~~~~d~~~l~~~i~-  170 (412)
T 2x5d_A          111 GLAHLMLATL--DHGDTILVPNPSYPIHIYGAVIAG-------------AQVRSVPLVPG----IDFFNELERAIRESI-  170 (412)
T ss_dssp             HHHHHHHHHC--CTTCEEEEEESCCHHHHHHHHHHT-------------CEEEEEECSTT----SCHHHHHHHHHHTEE-
T ss_pred             HHHHHHHHhC--CCCCEEEEcCCCchhHHHHHHHcC-------------CEEEEeecCCc----cCCCCCHHHHHHhcc-
Confidence            9999999763  356789999999999766544322             11111111100    011112466666664 


Q ss_pred             cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccc----cCCCcceeeeccc
Q 011777          247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET----QGVIPDIVTMAKG  322 (477)
Q Consensus       247 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~----~gv~pDivt~sK~  322 (477)
                         .++++|++...++++|. .++.+++++|.++|++||+++|+||+|++|.++|.....+..    .+....+.++||.
T Consensus       171 ---~~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~  246 (412)
T 2x5d_A          171 ---PKPRMMILGFPSNPTAQ-CVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKS  246 (412)
T ss_dssp             ---SCCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-C
T ss_pred             ---cCceEEEECCCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccc
Confidence               34556666444666775 467899999999999999999999999999876632222222    3444556689999


Q ss_pred             cc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCce
Q 011777          323 IG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIG  399 (477)
Q Consensus       323 lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~  399 (477)
                      ++ +|+|+||+++++++++.+.......+++.|+++++++.++|+..++  ++..++++++.+++.+.|+++  ...   
T Consensus       247 ~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~---  321 (412)
T 2x5d_A          247 YNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA--GWM---  321 (412)
T ss_dssp             CSCTTSCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH--TCC---
T ss_pred             cCCcccceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC--CCE---
Confidence            99 7999999999999998887665666788999999999999985432  345666667777777777664  222   


Q ss_pred             eeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHH-cCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          400 DVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       400 ~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      ..++. |+++++++....    . .....++.+.|++ +||++.++..+    .+++||+++.  +++++++++++|.++
T Consensus       322 ~~~~~~g~~~~~~~~~~~----~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~~~l~~~l~~l~~~  394 (412)
T 2x5d_A          322 VENPKASMYVWAKIPEPY----A-HLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE--NRDRLRQAVRGIKAM  394 (412)
T ss_dssp             CCCCSBSSEEEEECCTTT----G-GGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred             ecCCCeeeEEEEEcCCcc----C-CCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHH
Confidence            22344 667787763110    0 0014567788765 69999987433    4799999875  899999999999998


Q ss_pred             Hhh
Q 011777          474 MSK  476 (477)
Q Consensus       474 l~~  476 (477)
                      +++
T Consensus       395 l~~  397 (412)
T 2x5d_A          395 FRA  397 (412)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            864

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=100.00  E-value=9.4e-32  Score=270.79  Aligned_cols=343  Identities=12%  Similarity=0.046  Sum_probs=237.5

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEANE  169 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA~~  169 (477)
                      +|+.++||.+|..  .+| .+|.+.+++.++++...  +....+..+.+..+++.+.+..+  .+.++|++++||++|++
T Consensus        28 ~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~  104 (388)
T 1j32_A           28 EGIDVCSFSAGEP--DFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF  104 (388)
T ss_dssp             TTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred             cCCCEEECCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHH
Confidence            6889999988875  466 58999999999886532  11111233445566666655433  34578999999999999


Q ss_pred             HHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCC
Q 011777          170 LAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS  249 (477)
Q Consensus       170 ~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~  249 (477)
                      .+++.+.  .+++.|++.+++||++.......             |...+.+|......+..|    .++|++.++    
T Consensus       105 ~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~l~----  161 (388)
T 1j32_A          105 NLMLAMI--EPGDEVIIPAPFWVSYPEMVKLA-------------EGTPVILPTTVETQFKVS----PEQIRQAIT----  161 (388)
T ss_dssp             HHHHHHC--CTTCEEEEESSCCTHHHHHHHHT-------------TCEEEEECCCGGGTTCCC----HHHHHHHCC----
T ss_pred             HHHHHhc--CCCCEEEEcCCCChhHHHHHHHc-------------CCEEEEecCCcccCCCCC----HHHHHHhcC----
Confidence            9999773  35678999999999875543222             112222222111112212    477888775    


Q ss_pred             CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCC---Cccccc--cCCCcceeeeccccc
Q 011777          250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH---YWGFET--QGVIPDIVTMAKGIG  324 (477)
Q Consensus       250 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~---~~~~~~--~gv~pDivt~sK~lg  324 (477)
                      +++++|++++.++++|.+ ++++++++|.++|++||+++|+||+|++|.+.|..   +..++.  .+..+++.++||.++
T Consensus       162 ~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~  240 (388)
T 1j32_A          162 PKTKLLVFNTPSNPTGMV-YTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYA  240 (388)
T ss_dssp             TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTT
T ss_pred             cCceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccC
Confidence            367888877778888855 57889999999999999999999999999876622   122221  445667778999998


Q ss_pred             -CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceee
Q 011777          325 -NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDV  401 (477)
Q Consensus       325 -~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v  401 (477)
                       .|+|+|++++++++++.+......++++.+++++.++.++|+..++  ++..++++++.+++.+.|++    .+.+..+
T Consensus       241 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~  316 (388)
T 1j32_A          241 MTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNA----MPGLECP  316 (388)
T ss_dssp             CTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHT----CTTCBCC
T ss_pred             CcccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhh----CCCCccc
Confidence             6899999999999998887666667888999999999999874321  33455556666666666544    3222222


Q ss_pred             ecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHH-cCceeeccCCC--CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          402 RGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGGLH--GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       402 ~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .+. |.++++.+...       .....++.+.|++ +||.+.++..+  .+++||+++  ++++++++++++|++++++
T Consensus       317 ~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~l~~  386 (388)
T 1j32_A          317 KPDGAFYMFPSIAKT-------GRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDLDTIKRGMERLEKFLHG  386 (388)
T ss_dssp             CCCBTTEECCBCGGG-------TCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred             CCCeeEEEEEecCCC-------CCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence            333 44555554210       0124567888876 79999987433  478999876  6899999999999998865

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=100.00  E-value=4.2e-32  Score=275.25  Aligned_cols=340  Identities=11%  Similarity=0.060  Sum_probs=230.5

Q ss_pred             CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhc---cccccccCChHHHHHHHHHHhhCCCC--C-CEEEEeCChHH
Q 011777           93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL---QHATTIYLHHAIADFAEALASKMPGN--L-KVVYFVNSGTE  166 (477)
Q Consensus        93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~---~~~~~~~~~~~~~~l~~~La~~~~~~--~-~~v~~~~sGse  166 (477)
                      ..|+++|||.+|..  .+| .+|.|.+++.+++++.   .+....+..+.+..+++.+.+..+.+  . ++|++++||++
T Consensus        44 ~~g~~~idl~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~  120 (404)
T 2o1b_A           44 HGPLPLINMAVGIP--DGP-TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKN  120 (404)
T ss_dssp             CCSSCCEECCCCSC--SSC-CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHH
T ss_pred             cCCCCEEecCCcCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHH
Confidence            35788999998876  567 5899999999987542   11111122233444555544433543  2 68999999999


Q ss_pred             HHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777          167 ANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF  246 (477)
Q Consensus       167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~  246 (477)
                      |++.+++.+.  .+++.|++.+++||++.......+.           .+..++...   ..+..|    +++|++.++ 
T Consensus       121 al~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~g~-----------~~~~v~~~~---~~~~~d----~~~l~~~l~-  179 (404)
T 2o1b_A          121 GLVAVPTCVI--NPGDYVLLPDPGYTDYLAGVLLADG-----------KPVPLNLEP---PHYLPD----WSKVDSQII-  179 (404)
T ss_dssp             HHHHHHHHHC--CTTCEEEEEESCCSSHHHHHHHTTC-----------EEEEEECCT---TTCCCC----GGGSCHHHH-
T ss_pred             HHHHHHHHhc--CCCCEEEEcCCCchhHHHHHHHCCC-----------EEEEeccCc---ccCcCC----HHHHHHhhc-
Confidence            9999999763  2567899999999998765433221           111222111   111112    356666665 


Q ss_pred             cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cc---cCCCcceeeeccc
Q 011777          247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ET---QGVIPDIVTMAKG  322 (477)
Q Consensus       247 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~---~gv~pDivt~sK~  322 (477)
                         .++++|+++..++++|.+ ++.+++++|.++|++||++||+||+|++|.++| ....+ ..   .+..+.+.++||.
T Consensus       180 ---~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~  254 (404)
T 2o1b_A          180 ---DKTKLIYLTYPNNPTGST-ATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDA-KNPSILASENGKDVAIEIYSLSKG  254 (404)
T ss_dssp             ---HHEEEEEECSSCTTTCCC-CCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSS-CCCCGGGSTTHHHHEEEEEESTTT
T ss_pred             ---cCceEEEEcCCCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCCEEEEEecchh
Confidence               356777777667777754 678999999999999999999999999987766 32222 11   2334556689999


Q ss_pred             cc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCce
Q 011777          323 IG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIG  399 (477)
Q Consensus       323 lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~  399 (477)
                      ++ +|+|+||+++++++++.+.......+++.|+++++++.++|+..++  ++..++++++.+++.+.|++    ++. .
T Consensus       255 ~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~-~  329 (404)
T 2o1b_A          255 YNMSGFRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAK----ADL-P  329 (404)
T ss_dssp             TTCGGGCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH----TTC-C
T ss_pred             ccCchhheEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh----cCC-e
Confidence            98 7999999999999998887665566788999999999999876411  23334444555555555544    332 2


Q ss_pred             eeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          400 DVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       400 ~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      ..++. |+++++++...        ....++.+.|+ ++||++.++..+    .+++||+++.  +++++++++++|+++
T Consensus       330 ~~~~~~g~~~~~~~~~~--------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~e~l~~~l~~l~~~  399 (404)
T 2o1b_A          330 FVHAKGGIYVWLETPPG--------YDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL--DDQKLDEAAIRLTEL  399 (404)
T ss_dssp             EECCCBSSEEEEECCTT--------CCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS--CTTHHHHHHHHHHGG
T ss_pred             ecCCCcceEEEEeCCCC--------CCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC--CHHHHHHHHHHHHHH
Confidence            23333 56678776311        11346777776 579999987433    4799998875  789999999999988


Q ss_pred             Hhh
Q 011777          474 MSK  476 (477)
Q Consensus       474 l~~  476 (477)
                      +++
T Consensus       400 l~~  402 (404)
T 2o1b_A          400 AYL  402 (404)
T ss_dssp             GGG
T ss_pred             HHh
Confidence            764

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=100.00  E-value=2.9e-31  Score=270.23  Aligned_cols=355  Identities=11%  Similarity=0.024  Sum_probs=236.7

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc----ccccccCChHHHHHHHHHHhhCCC--CC-CEEEEeCChHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ----HATTIYLHHAIADFAEALASKMPG--NL-KVVYFVNSGTEAN  168 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~----~~~~~~~~~~~~~l~~~La~~~~~--~~-~~v~~~~sGseA~  168 (477)
                      ..+|||..|..  .++ .+|+|++++.+++....    +....+..+.+..+++.+.+.++.  +. ++|++++||++|+
T Consensus        28 ~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~  104 (422)
T 3fvs_A           28 HDVVNLGQGFP--DFP-PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL  104 (422)
T ss_dssp             SCCEECCCSSC--SSC-CCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred             CCceEeCCCCC--CCC-CCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHH
Confidence            36789888774  343 68999999999987632    111112234566666666655432  33 5899999999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCC-----C---cCCCCCCCHHHHHHHH
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPD-----P---YHGSFGSDAARYAQDL  240 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~l  240 (477)
                      +.+++.+.  .+++.|++..++||++.......+..           +..++...     .   ....+..|    ++++
T Consensus       105 ~~~~~~~~--~~gd~vl~~~p~~~~~~~~~~~~g~~-----------~~~~~~~~~~~~~G~~~~~~~~~~d----~~~l  167 (422)
T 3fvs_A          105 FTAFQALV--DEGDEVIIIEPFFDCYEPMTMMAGGR-----------PVFVSLKPGPIQNGELGSSSNWQLD----PMEL  167 (422)
T ss_dssp             HHHHHHHC--CTTCEEEEEESCCTTHHHHHHHTTCE-----------EEEEECBCCCCCSSSCCBGGGSBCC----HHHH
T ss_pred             HHHHHHHc--CCCCEEEEcCCCchhhHHHHHHcCCE-----------EEEEecccccccccccccccCCCCC----HHHH
Confidence            99999763  36678999999999976544433211           11111110     0   00011111    4677


Q ss_pred             HHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc----CCCcce
Q 011777          241 QDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ----GVIPDI  316 (477)
Q Consensus       241 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~----gv~pDi  316 (477)
                      +++++    .++++|++++.+|++|.+ ++++++++|.++|++||+++|+||+|++|.++|.....+...    +..+++
T Consensus       168 ~~~~~----~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~  242 (422)
T 3fvs_A          168 AGKFT----SRTKALVLNTPNNPLGKV-FSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTI  242 (422)
T ss_dssp             HTTCC----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEE
T ss_pred             HhhcC----CCceEEEECCCCCCCCcC-CCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEE
Confidence            77664    467888888888888854 488899999999999999999999999998877333333222    333556


Q ss_pred             eeeccccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHh-----hchhhHHHHHHHHHHHHHHHHHH
Q 011777          317 VTMAKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRV-----IDKERRQAHCADVGSHLLGRLRT  390 (477)
Q Consensus       317 vt~sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~-----l~~~~~~~~~~~~~~~l~~~L~~  390 (477)
                      .++||.+| +|+|+||+++++++++.+....+..+++.|+++++++.++|+.     ...+++.++.++..+..++.+.+
T Consensus       243 ~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  322 (422)
T 3fvs_A          243 GSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIR  322 (422)
T ss_dssp             EEHHHHHTCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ecchhccCCccceEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            68999999 6999999999999998887666677889999999999999974     11233444444444444444444


Q ss_pred             HHHhCCCceeeeccceeEEEEEeeCCCC-----CCccHHHHHHHHHHH-HHcCceeeccCCC---------CCEEEEeCC
Q 011777          391 LQERHDIIGDVRGRGLMVGMELVTDRKE-----KTPAKAETAVLFEKL-RELGVLVGKGGLH---------GNVFRIKPP  455 (477)
Q Consensus       391 l~~~~~~~~~v~g~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~---------~~~iRi~p~  455 (477)
                      ...+++.....+..|+++++++......     .........++.+.+ .++||++.++..+         .+++||++.
T Consensus       323 ~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~  402 (422)
T 3fvs_A          323 SLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFV  402 (422)
T ss_dssp             HHHTTTCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECC
T ss_pred             HHHHcCCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEec
Confidence            4444444334455677888876421000     000000023555654 4579999987543         579999754


Q ss_pred             CCCcHHHHHHHHHHHHHHHhhC
Q 011777          456 MCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       456 ~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                        .++++|++++++|+++++++
T Consensus       403 --~~~e~i~~~l~~l~~~l~~l  422 (422)
T 3fvs_A          403 --KDEATLQAMDEKLRKWKVEL  422 (422)
T ss_dssp             --CCHHHHHHHHHHHHHHHHCC
T ss_pred             --CCHHHHHHHHHHHHHHHhhC
Confidence              59999999999999998764

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=100.00  E-value=1.2e-31  Score=270.25  Aligned_cols=341  Identities=14%  Similarity=0.099  Sum_probs=232.7

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccc--ccccCChHHHHHHHHHHhhCC--CCCCE-EEEeCChHHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA--TTIYLHHAIADFAEALASKMP--GNLKV-VYFVNSGTEANEL  170 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~--~~~~~~~~~~~l~~~La~~~~--~~~~~-v~~~~sGseA~~~  170 (477)
                      ..++||..+..  .+| .+|++.+++.+++++....  ...+..+.+..+++.+.+..+  .+.++ +++++||++|++.
T Consensus        26 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~  102 (389)
T 1gd9_A           26 KDVISLGIGEP--DFD-TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM  102 (389)
T ss_dssp             SSCEECCCCSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred             cCeEecCCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHH
Confidence            35789888764  466 6899999999998763211  111223445555555555434  34567 9999999999999


Q ss_pred             HHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCC
Q 011777          171 AMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG  250 (477)
Q Consensus       171 Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~  250 (477)
                      +++.+.  .+++.|++.+++||+........+.           .+..++..  ....+..|    .+++++.++    .
T Consensus       103 ~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~--~~~~~~~d----~~~l~~~l~----~  159 (389)
T 1gd9_A          103 GLSAFL--KDGEEVLIPTPAFVSYAPAVILAGG-----------KPVEVPTY--EEDEFRLN----VDELKKYVT----D  159 (389)
T ss_dssp             HHTTTC--CTTCEEEEEESCCTTHHHHHHHHTC-----------EEEEEECC--GGGTTCCC----HHHHHHHCC----T
T ss_pred             HHHHhC--CCCCEEEEcCCCchhHHHHHHHCCC-----------EEEEeccC--CccCCCCC----HHHHHHhcC----c
Confidence            998652  3567899999999997654432211           11222211  10112112    478888775    3


Q ss_pred             CeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc-CC-Ccc--eeeeccccc-C
Q 011777          251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ-GV-IPD--IVTMAKGIG-N  325 (477)
Q Consensus       251 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~-gv-~pD--ivt~sK~lg-~  325 (477)
                      ++++|++++.++++|.+ ++++++++|.++|++||+++|+||+|+++.++|....++..+ +. ..|  +.++||.++ +
T Consensus       160 ~~~~v~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~  238 (389)
T 1gd9_A          160 KTRALIINSPCNPTGAV-LTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMT  238 (389)
T ss_dssp             TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCG
T ss_pred             CceEEEEECCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCc
Confidence            57777777777878854 678899999999999999999999999998776213333222 21 234  457999998 6


Q ss_pred             ccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch----hhHHHHHHHHHHHHHHHHHHHHHhCCCceee
Q 011777          326 GLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK----ERRQAHCADVGSHLLGRLRTLQERHDIIGDV  401 (477)
Q Consensus       326 G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~----~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v  401 (477)
                      |+|+|++++++++++.+.......+++.|+++++++.++|+....    ++..++++++.+++.+.|+++    +.....
T Consensus       239 G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~  314 (389)
T 1gd9_A          239 GWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM----GLPTVK  314 (389)
T ss_dssp             GGCCEEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCCCC
T ss_pred             ccceEEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc----CCeecC
Confidence            899999999999998887666667788999999999999876443    233445555556666655553    321112


Q ss_pred             eccceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          402 RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       402 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +..|+++++++...       .....++.+.|+ ++||.+.++..+    .+++||+++.  +++++++++++|++++++
T Consensus       315 ~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~  385 (389)
T 1gd9_A          315 PKGAFYIFPRIRDT-------GLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT--AYEKLEEAMDRMERVLKE  385 (389)
T ss_dssp             CCBTTEECCBCGGG-------TCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred             CCeeeEEEEeccCC-------CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence            22355666665310       012456888887 899999987432    4689998764  899999999999998864

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=100.00  E-value=1.8e-31  Score=267.01  Aligned_cols=326  Identities=12%  Similarity=0.050  Sum_probs=231.1

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccc--ccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA--TTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEANE  169 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~--~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA~~  169 (477)
                      +|+.++||.++..  .+|+ +|++.+++.++++.....  ...+..+.+..+++.+.+..+  .+.++|++++||++|++
T Consensus        27 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~  103 (370)
T 2z61_A           27 EGKKVIHLEIGEP--DFNT-PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLF  103 (370)
T ss_dssp             TTCCCEECCCCSC--SSCC-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHH
T ss_pred             cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHH
Confidence            4788999988775  5776 799999999998753211  111223445556665554432  45578999999999999


Q ss_pred             HHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCC
Q 011777          170 LAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS  249 (477)
Q Consensus       170 ~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~  249 (477)
                      .+++.+.  .++++|++.+++||+........             |...+.+|      .+      .++|++.++    
T Consensus       104 ~~~~~~~--~~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~------~d------~~~l~~~l~----  152 (370)
T 2z61_A          104 FALSSII--DDGDEVLIQNPCYPCYKNFIRFL-------------GAKPVFCD------FT------VESLEEALS----  152 (370)
T ss_dssp             HHHHHHC--CTTCEEEEESSCCTHHHHHHHHT-------------TCEEEEEC------SS------HHHHHHHCC----
T ss_pred             HHHHHhc--CCCCEEEEeCCCchhHHHHHHHc-------------CCEEEEeC------CC------HHHHHHhcc----
Confidence            9999763  35678999999999876554332             22222222      11      478888775    


Q ss_pred             CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc----CCCcceeeeccccc-
Q 011777          250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ----GVIPDIVTMAKGIG-  324 (477)
Q Consensus       250 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~----gv~pDivt~sK~lg-  324 (477)
                      +++++|++++.++++|.+.+    ++ |.++|++||+++|+||+|+++.++| ....+..+    +....+.++||.++ 
T Consensus       153 ~~~~~v~~~~p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~~~  226 (370)
T 2z61_A          153 DKTKAIIINSPSNPLGEVID----RE-IYEFAYENIPYIISDEIYNGLVYEG-KCYSAIEFDENLEKTILINGFSKLYAM  226 (370)
T ss_dssp             SSEEEEEEESSCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTTCBSSS-CCCCGGGTCTTCSSEEEEEESTTTTTC
T ss_pred             cCceEEEEcCCCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhhcccCC-CCcCHHHccCCCCcEEEEecChhccCC
Confidence            36777788777888887665    44 9999999999999999999987766 43333222    33333557999998 


Q ss_pred             CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHh-hch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceee
Q 011777          325 NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRV-IDK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDV  401 (477)
Q Consensus       325 ~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~-l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v  401 (477)
                      +|+|+|++++++++++.+....+..+++.|+++++++.++|+. .++  ++..++++++.+++.+.|+++    +.....
T Consensus       227 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~  302 (370)
T 2z61_A          227 TGWRIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF----GWEVNN  302 (370)
T ss_dssp             GGGCCEEEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCBCCC
T ss_pred             ccceEEEEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc----CCeecC
Confidence            6999999999999998887666667788999999999888865 221  345566666677777776654    221111


Q ss_pred             eccceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          402 RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       402 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      ...|+++++++..          ...++.+.|+ ++||.+.++..+    .+++||+++  ++++++++++++|+++++
T Consensus       303 ~~~~~~~~~~~~~----------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~  369 (370)
T 2z61_A          303 PIGAYYVFPNIGE----------DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA--NSYENIKEGLERIKEFLN  369 (370)
T ss_dssp             CCBTTEECCBCSS----------CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred             CCcceEEEEecCC----------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence            2235666666521          1456788887 789999887432    468999887  699999999999999875

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=1.8e-31  Score=269.11  Aligned_cols=338  Identities=13%  Similarity=0.099  Sum_probs=238.6

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccc--ccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA--TTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEANE  169 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~--~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA~~  169 (477)
                      .|+.++||.++.+  .+|+ +|.+.+++.++++.....  ...+..+.+..+++.+.+..+  .+.+++++++||++|++
T Consensus        39 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~  115 (389)
T 1o4s_A           39 KGEDVINLTAGEP--DFPT-PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF  115 (389)
T ss_dssp             TTCCCEECCCSSC--SSCC-CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred             cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHH
Confidence            5788999988775  4675 799999999998753211  111223344555555544323  24578999999999999


Q ss_pred             HHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCC
Q 011777          170 LAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS  249 (477)
Q Consensus       170 ~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~  249 (477)
                      .+++.+.  .+++.|++.+++|+++.......             |...+.+|......+..|    +++|+++++    
T Consensus       116 ~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~l~----  172 (389)
T 1o4s_A          116 NAFMALL--DPGDEVIVFSPVWVSYIPQIILA-------------GGTVNVVETFMSKNFQPS----LEEVEGLLV----  172 (389)
T ss_dssp             HHHHHHC--CTTCEEEEEESCCTTHHHHHHHT-------------TCEEEEEECCGGGTTCCC----HHHHHHTCC----
T ss_pred             HHHHHhC--CCCCEEEEcCCCchhHHHHHHHc-------------CCEEEEEecCCccCCCCC----HHHHHHhcc----
Confidence            9999763  35678999999999876544322             112222221110112112    477887775    


Q ss_pred             CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccc----cCCCcceeeeccccc-
Q 011777          250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET----QGVIPDIVTMAKGIG-  324 (477)
Q Consensus       250 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~----~gv~pDivt~sK~lg-  324 (477)
                      .++++|++++.++++|. .++++++++|.++|++||+++|+||+|++|.+.| ....+..    .+....+.++||.++ 
T Consensus       173 ~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~~~  250 (389)
T 1o4s_A          173 GKTKAVLINSPNNPTGV-VYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTD-EFTSILDVSEGFDRIVYINGFSKSHSM  250 (389)
T ss_dssp             TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSS-CCCCHHHHCSSSTTEEEEEESTTTTTC
T ss_pred             cCceEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCCHhhcCCCCCcEEEEeechhhcCC
Confidence            35777887777788885 4578899999999999999999999999987766 3333322    233334557999998 


Q ss_pred             CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc
Q 011777          325 NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGR  404 (477)
Q Consensus       325 ~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~  404 (477)
                      +|+|+|++++++++++.+......++++.+++++.++.++|+.. .+++.++++++.+++.+.|+++  .....  ....
T Consensus       251 ~G~r~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~~~  325 (389)
T 1o4s_A          251 TGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKM--GVKFV--EPEG  325 (389)
T ss_dssp             GGGCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHT--TCCCC--CCSB
T ss_pred             cccceEEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhc--CCeee--cCCc
Confidence            68999999999999988876666667888999999988888653 4567778888888888888775  23222  1223


Q ss_pred             ceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC--CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          405 GLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH--GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       405 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      |.++++.+.          ....++.+.|+ ++||.+.++..+  .+++||+++  .+++++++++++|.+++++
T Consensus       326 ~~~~~~~~~----------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~--~~~~~l~~~l~~l~~~l~~  388 (389)
T 1o4s_A          326 AFYLFFKVR----------GDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA--TSIERLTEALDRIEDFLNS  388 (389)
T ss_dssp             SSEEEEECS----------SCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHTC
T ss_pred             ceEEEEeCC----------CCHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEe--CCHHHHHHHHHHHHHHHhc
Confidence            566677652          01356788887 889999887433  369999877  4899999999999998864

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=100.00  E-value=9.4e-32  Score=270.24  Aligned_cols=329  Identities=17%  Similarity=0.135  Sum_probs=234.7

Q ss_pred             EEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCCh-HHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHH
Q 011777           98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH-AIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR  176 (477)
Q Consensus        98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~-~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar  176 (477)
                      ++||..|..  .++ .+|.+.+++.+++++.    ..|... ...++++.|+++++.+.+++++++||++|++.+++.+.
T Consensus        27 ~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~   99 (381)
T 1v2d_A           27 AVNLGQGFP--SNP-PPPFLLEAVRRALGRQ----DQYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV   99 (381)
T ss_dssp             CEECCCCSC--SSC-CCHHHHHHHHHHTTTS----CSCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC
T ss_pred             eEEecCCCC--CCC-CCHHHHHHHHHHHHHh----cCCCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC
Confidence            789988765  455 6899999999988751    123332 46789999999887766789999999999999999773


Q ss_pred             hccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCC-CcCCCCCCCHHHHHHHHHHHHhccCCCCeeEE
Q 011777          177 LSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPD-PYHGSFGSDAARYAQDLQDHIDFGTSGKVAGF  255 (477)
Q Consensus       177 ~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~v  255 (477)
                        .++++|++.+++||++....... +.          .+..++... +..  +..|    ++++++.++    +++++|
T Consensus       100 --~~gd~Vl~~~~~~~~~~~~~~~~-g~----------~~~~v~~~~~~~~--~~~d----~~~l~~~l~----~~~~~v  156 (381)
T 1v2d_A          100 --GPGDEVVVLEPFFDVYLPDAFLA-GA----------KARLVRLDLTPEG--FRLD----LSALEKALT----PRTRAL  156 (381)
T ss_dssp             --CTTCEEEEEESCCTTHHHHHHHT-TC----------EEEEEECEEETTE--EECC----HHHHHTTCC----TTEEEE
T ss_pred             --CCCCEEEEcCCCchhHHHHHHHc-CC----------EEEEEeCCCCCcc--CCcC----HHHHHHhcC----cCCEEE
Confidence              46788999999999976533221 11          112222110 000  1111    467777664    467888


Q ss_pred             EecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccc--ccCCCcceeeeccccc-CccceEEE
Q 011777          256 IAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE--TQGVIPDIVTMAKGIG-NGLPLGAV  332 (477)
Q Consensus       256 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~--~~gv~pDivt~sK~lg-~G~pig~v  332 (477)
                      +++++++++|.+ ++++++++|.++|++||+++|+||+|++|.+ |.....+.  ..+..+++.++||.++ .|+|+|++
T Consensus       157 ~~~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~  234 (381)
T 1v2d_A          157 LLNTPMNPTGLV-FGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVGSAGKRLEATGYRVGWI  234 (381)
T ss_dssp             EEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEE
T ss_pred             EECCCCCCCCCc-cCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEeechhhcCCcccceEEE
Confidence            888888888854 5778999999999999999999999998855 31111221  3567777889999998 68999999


Q ss_pred             EeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc--h--hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeE
Q 011777          333 VTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID--K--ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMV  408 (477)
Q Consensus       333 ~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~--~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~  408 (477)
                      ++++++++.+....+..+++.++++++++.++|+...  +  ++..++++++.+++.+.|++.    +........|+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~  310 (381)
T 1v2d_A          235 VGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM----GLRVYVPEGTYFL  310 (381)
T ss_dssp             ECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT----TCCEECCSBSSEE
T ss_pred             EeCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC----CCEecCCCcceEE
Confidence            9999998888765555678889999999999998652  2  345566666777777776653    2211112236677


Q ss_pred             EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC------CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          409 GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL------HGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       409 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~------~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ++++..      .     + +.+.|.++||++.++..      ..+++||+++.  +++++++++++|++++++
T Consensus       311 ~~~~~~------~-----~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~  370 (381)
T 1v2d_A          311 MAELPG------W-----D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK--TEEELHLALERLGRVVNS  370 (381)
T ss_dssp             EEECTT------C-----C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS--CHHHHHHHHHHHHHHC--
T ss_pred             EEecCh------H-----h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhh
Confidence            776621      1     1 56677889999988642      24799999876  899999999999988754

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=100.00  E-value=5.2e-31  Score=269.18  Aligned_cols=350  Identities=15%  Similarity=0.078  Sum_probs=239.3

Q ss_pred             EeCCCCEEEeecCCcccc-cCCCCCHHHHHHHHHHHhhcccccccc-CChHHHHHHHHHHhhCC-----CCCCEEEEeCC
Q 011777           91 FDENGRRYLDAFAGIVTV-SCGHCHPDVLNAIFEQSKLLQHATTIY-LHHAIADFAEALASKMP-----GNLKVVYFVNS  163 (477)
Q Consensus        91 ~d~dG~~ylD~~~g~~~~-~lGh~~p~v~~Av~~~l~~~~~~~~~~-~~~~~~~l~~~La~~~~-----~~~~~v~~~~s  163 (477)
                      .+.+|+.+|||..|.... +-.+.+|+|.+|+.++++...  ...| ......++++.+++++.     .+.++|++|+|
T Consensus        49 ~~~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g  126 (427)
T 3dyd_A           49 KPNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGK--YNGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSG  126 (427)
T ss_dssp             CCCTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCC--SSSCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESS
T ss_pred             cccCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCc--CCCCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecC
Confidence            345788999999888532 123578999999999987632  1123 23445677788887765     45678999999


Q ss_pred             hHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHH
Q 011777          164 GTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDH  243 (477)
Q Consensus       164 GseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~  243 (477)
                      |++|++.+++.+..  +++.|++.+++|+++.......+.             ....++......+..|    ++++++.
T Consensus       127 ~t~al~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~d----~~~l~~~  187 (427)
T 3dyd_A          127 CSQAIDLCLAVLAN--PGQNILVPRPGFSLYKTLAESMGI-------------EVKLYNLLPEKSWEID----LKQLEYL  187 (427)
T ss_dssp             HHHHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHTTC-------------EEEEEEEEGGGTTEEC----HHHHHSS
T ss_pred             cHHHHHHHHHHhcC--CCCEEEEcCCCchhHHHHHHHcCC-------------EEEEEecccccCCCCC----HHHHHHH
Confidence            99999999998743  678899999999987655443321             1111111110111111    4667766


Q ss_pred             HhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee---eec
Q 011777          244 IDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV---TMA  320 (477)
Q Consensus       244 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv---t~s  320 (477)
                      ++    .++++|++...+|++|. .++++++++|.++|++||+++|+||+|++|+++|..+..+...+..++++   +||
T Consensus       188 l~----~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~s  262 (427)
T 3dyd_A          188 ID----EKTACLIVNNPSNPCGS-VFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLA  262 (427)
T ss_dssp             CC----TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEEST
T ss_pred             hc----cCCCEEEEECCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeecc
Confidence            64    24555555555777885 56888999999999999999999999999998884344555555566666   899


Q ss_pred             cccc-CccceEEEEeC-------HHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHH
Q 011777          321 KGIG-NGLPLGAVVTT-------PEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLR  389 (477)
Q Consensus       321 K~lg-~G~pig~v~~~-------~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~  389 (477)
                      |.++ .|+|+||++++       +++++.+..... .+++.|+++++++.++|+....   ++..++++++.+++.+.|+
T Consensus       263 K~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~  341 (427)
T 3dyd_A          263 KRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQ-RILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALA  341 (427)
T ss_dssp             TTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH-HHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCcCcceEEEEecCcchhhHHHHHHHHHHHHh-ccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9987 58999999987       467776654322 3678999999999999985332   2334445555555555554


Q ss_pred             HHHHhCCCceee-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC--CCEEEEeCCCCCcHHHHHH
Q 011777          390 TLQERHDIIGDV-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH--GNVFRIKPPMCFTKDDADF  465 (477)
Q Consensus       390 ~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~  465 (477)
                      +    ++.+..+ +..|+++++.+....   .|......++.+.|+ ++||++.++..+  .+++||+.  .+++++|++
T Consensus       342 ~----~~g~~~~~p~~g~~~~~~l~~~~---~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~--~~~~e~i~~  412 (427)
T 3dyd_A          342 A----IPGLRPVRPSGAMYLMVGIEMEH---FPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVI--TVPEVMMLE  412 (427)
T ss_dssp             H----STTEEEECCSBTTEEEEEECGGG---CTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEES--CSCHHHHHH
T ss_pred             c----CCCceecCCCeeEEEEEecCHhh---cCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEE--CCCHHHHHH
Confidence            4    4444444 344667777774211   111112345677774 789999987433  47999975  479999999


Q ss_pred             HHHHHHHHHhh
Q 011777          466 LVDALDYSMSK  476 (477)
Q Consensus       466 ~l~~l~~~l~~  476 (477)
                      ++++|.+++++
T Consensus       413 ~l~~l~~~l~~  423 (427)
T 3dyd_A          413 ACSRIQEFCEQ  423 (427)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998864

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=100.00  E-value=1.1e-31  Score=274.77  Aligned_cols=355  Identities=13%  Similarity=0.113  Sum_probs=233.4

Q ss_pred             EeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccc---------cccCC-hHHHHHHHHHHhhCC--------
Q 011777           91 FDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT---------TIYLH-HAIADFAEALASKMP--------  152 (477)
Q Consensus        91 ~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~---------~~~~~-~~~~~l~~~La~~~~--------  152 (477)
                      ||.++|.+.++..|...++++  ++.+.+++.++.....+..         ..|.. ....+|++.|++++.        
T Consensus        31 y~~~~~p~~~i~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~  108 (435)
T 3piu_A           31 YHEVHNTNGIIQMGLAENQLC--FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVT  108 (435)
T ss_dssp             CBTTTBTTSBEECSSCCCCSS--HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSC
T ss_pred             CCcccCCCCeEEecccccccc--HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCC
Confidence            788998888888888777775  6888888887665432210         11222 223455555555543        


Q ss_pred             CCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCC
Q 011777          153 GNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSD  232 (477)
Q Consensus       153 ~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (477)
                      .+.++|+|++||++|++.+++.++.  +++.|++.+++|++.........            |...+.++......+..|
T Consensus       109 ~~~~~v~~~~gg~~a~~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~~------------g~~~~~~~~~~~~~~~~d  174 (435)
T 3piu_A          109 FDPNHLVLTAGATSANETFIFCLAD--PGEAVLIPTPYYPGFDRDLKWRT------------GVEIVPIHCTSSNGFQIT  174 (435)
T ss_dssp             CCGGGEEEEEHHHHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHTTTTT------------CCEEEEEECCGGGTSCCC
T ss_pred             CCHHHEEEcCChHHHHHHHHHHhcC--CCCeEEECCCccccHHHHHHHhc------------CCEEEEeeCCCccCCcCC
Confidence            4467899999999999999997643  56789999999988765433122            222222222211122222


Q ss_pred             HHHHHHHHHHHHhcc--CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc
Q 011777          233 AARYAQDLQDHIDFG--TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ  310 (477)
Q Consensus       233 ~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~  310 (477)
                          +++|+++++..  ...++++|++++.++++|. .++.+.+++|.++|++||++||+||+|++++++|..+......
T Consensus       175 ----~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~  249 (435)
T 3piu_A          175 ----ETALEEAYQEAEKRNLRVKGVLVTNPSNPLGT-TMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEV  249 (435)
T ss_dssp             ----HHHHHHHHHHHHHTTCCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHH
T ss_pred             ----HHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHh
Confidence                47788777631  2236788888877788885 5578889999999999999999999999987777322222111


Q ss_pred             C----CC-----cc----eeeeccccc-CccceEEEEe-CHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch-h---
Q 011777          311 G----VI-----PD----IVTMAKGIG-NGLPLGAVVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK-E---  371 (477)
Q Consensus       311 g----v~-----pD----ivt~sK~lg-~G~pig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~-~---  371 (477)
                      .    +.     +|    +.+|||++| +|+|+||+++ ++++.+.+..  ...+++.++++++++.++++..+. +   
T Consensus       250 ~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  327 (435)
T 3piu_A          250 LKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK--MSSFGLVSSQTQHLLSAMLSDKKLTKNYI  327 (435)
T ss_dssp             HHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHH--HGGGSCCCHHHHHHHHHHHHCHHHHHHHH
T ss_pred             ccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHH--HhhcCCCCHHHHHHHHHHhcChHHHHHHH
Confidence            1    11     33    557999999 7999999999 5677776653  234556788999888888864321 1   


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccCC---
Q 011777          372 -RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGGL---  445 (477)
Q Consensus       372 -~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~---  445 (477)
                       +..++++++.+++++.|+    +.++ ..+++. |+++++++.....  .+......++.+.|+++ ||++.++..   
T Consensus       328 ~~~~~~~~~~~~~l~~~L~----~~g~-~~~~~~~g~~~~~~l~~~~~--~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~  400 (435)
T 3piu_A          328 AENHKRLKQRQKKLVSGLQ----KSGI-SCLNGNAGLFCWVDMRHLLR--SNTFEAEMELWKKIVYEVHLNISPGSSCHC  400 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----TTTC-EECCCCSSSEEEEECGGGSS--SSSHHHHHHHHHHHHHTSCEECEEGGGGTC
T ss_pred             HHHHHHHHHHHHHHHHHHH----hcCC-cccCCCeeEEEEEEcccccc--cCCchhHHHHHHHHHHHCCEEEeCCcccCC
Confidence             223334444444444443    3332 333444 4888888743211  11222345778888777 999998643   


Q ss_pred             -CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          446 -HGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       446 -~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                       ..+++||+++.. ++++|++++++|++++++
T Consensus       401 ~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~  431 (435)
T 3piu_A          401 TEPGWFRVCFANL-PERTLDLAMQRLKAFVGE  431 (435)
T ss_dssp             SSTTEEEEECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeeCC-CHHHHHHHHHHHHHHHHH
Confidence             257999998665 999999999999998864

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=100.00  E-value=5.4e-31  Score=262.83  Aligned_cols=326  Identities=13%  Similarity=0.092  Sum_probs=229.1

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLM  174 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~  174 (477)
                      ++.+|||.++..  +++ .+|+|.+++.++++..    ..|+.+...+++++++++++.+.++|+|++||++|++.+++.
T Consensus        31 ~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~  103 (363)
T 3ffh_A           31 LTKITKLSSNEN--PLG-TSKKVAAIQANSSVET----EIYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRV  103 (363)
T ss_dssp             CSCCEECSSCSC--TTC-CCHHHHHHHHTCBSCC----CBC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHH
T ss_pred             CCceEEccCCCC--CCC-CCHHHHHHHHHHHHHh----hcCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHH
Confidence            357899988754  455 6899999998866532    234455567899999999877778999999999999999987


Q ss_pred             HHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeE
Q 011777          175 ARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAG  254 (477)
Q Consensus       175 ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~  254 (477)
                      ..  .++++|++.+++|+++.......+.           .+..++..  ....++      ++++++.++    +++++
T Consensus       104 ~~--~~gd~vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~--~~~~~d------~~~l~~~i~----~~~~~  158 (363)
T 3ffh_A          104 LL--DTTTNTVMATPTFVQYRQNALIEGA-----------EVREIPLL--QDGEHD------LEGMLNAID----EKTTI  158 (363)
T ss_dssp             HC--STTCEEEEEESSCHHHHHHHHHHTC-----------EEEEEECC--TTSCCC------HHHHHHHCC----TTEEE
T ss_pred             Hc--cCCCEEEEcCCChHHHHHHHHHcCC-----------EEEEecCC--CCCCcC------HHHHHHhcc----cCCCE
Confidence            63  3667899999999987655433321           12222221  111122      577888775    46788


Q ss_pred             EEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcc----eeeeccccc-Cccce
Q 011777          255 FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPD----IVTMAKGIG-NGLPL  329 (477)
Q Consensus       255 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pD----ivt~sK~lg-~G~pi  329 (477)
                      |+++..++++|.+. +.+.+.+|.+.|++ |+++|+||+|++|++ | ...........+|    +.++||.+| +|+|+
T Consensus       159 v~~~~p~nptG~~~-~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~-~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~  234 (363)
T 3ffh_A          159 VWICNPNNPTGNYI-ELADIQAFLDRVPS-DVLVVLDEAYIEYVT-P-QPEKHEKLVRTYKNLIITRTFSKIYGLASARV  234 (363)
T ss_dssp             EEEESSCTTTCCCC-CHHHHHHHHTTSCT-TSEEEEECTTGGGCS-S-CCCCCGGGGGTCTTEEEEEESSSTTCCSSCCC
T ss_pred             EEEeCCCCCcCCCc-CHHHHHHHHHhCCC-CcEEEEeCchHhhcC-c-cccCHHHHhhcCCCEEEEeechhhhcCchhce
Confidence            88887788888655 55556666666666 999999999999887 5 3333322211223    557999999 79999


Q ss_pred             EEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEE
Q 011777          330 GAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVG  409 (477)
Q Consensus       330 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~  409 (477)
                      |++++++++++.+....  .+++.|+++++++.++|+..   ++.++.++....+++.+.+...++..+...++.|.+++
T Consensus       235 G~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~  309 (363)
T 3ffh_A          235 GYGIADKEIIRQLNIVR--PPFNTTSIGQKLAIEAIKDQ---AFIGECRTSNANGIKQYEAFAKRFEKVKLYPANGNFVL  309 (363)
T ss_dssp             EEEEECHHHHHHHHHTC--CSCCCBHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCSSEEE
T ss_pred             eeeecCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHhhCCCceECCCCCeEEE
Confidence            99999999998887654  37889999999999999732   33344444444444444444444333445567788888


Q ss_pred             EEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC--CCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          410 MELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH--GNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       410 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      +++..          ...++.+.|.++||.+.++..+  .+++||+++   +++|+++++++|++++
T Consensus       310 ~~~~~----------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l  363 (363)
T 3ffh_A          310 IDLGI----------EAGTIFSYLEKNGYITRSGAALGFPTAVRITIG---KEEDNSAVIALLEKLL  363 (363)
T ss_dssp             EECSS----------CHHHHHHHHHHTTEECEETTTTTCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred             EECCC----------CHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC---CHHHHHHHHHHHHHhC
Confidence            87631          2457888999999999987543  579999865   8999999999998764

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=100.00  E-value=3.8e-31  Score=266.29  Aligned_cols=338  Identities=12%  Similarity=0.037  Sum_probs=227.3

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhCC--CCCC-EEEEeCChHHHHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKMP--GNLK-VVYFVNSGTEANELA  171 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~~--~~~~-~v~~~~sGseA~~~A  171 (477)
                      .+|||..+..  .+| .+|++.+++.++++...  +....+..+.+..+++.+.+.++  .+.+ +|++++||++|++.+
T Consensus        31 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~  107 (386)
T 1u08_A           31 QAINLSQGFP--DFD-GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAA  107 (386)
T ss_dssp             TCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHH
T ss_pred             CeEEecCCCC--CCC-CCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHH
Confidence            4788888765  466 68999999999987521  11111223445555555555433  4456 899999999999999


Q ss_pred             HHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCC
Q 011777          172 MLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGK  251 (477)
Q Consensus       172 l~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~  251 (477)
                      ++.+.  .++++|++.+++||++.......+.           .+..++....   .+..|    +++|++.++    ++
T Consensus       108 ~~~~~--~~gd~vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~~~---~~~~d----~~~l~~~l~----~~  163 (386)
T 1u08_A          108 ITALV--RNGDEVICFDPSYDSYAPAIALSGG-----------IVKRMALQPP---HFRVD----WQEFAALLS----ER  163 (386)
T ss_dssp             HHHHC--CTTCEEEEEESCCTTHHHHHHHTTC-----------EEEEEECCTT---TCCCC----HHHHHHHCC----TT
T ss_pred             HHHhC--CCCCEEEEeCCCchhHHHHHHHcCC-----------EEEEeecCcc---cCcCC----HHHHHHhhc----cc
Confidence            99763  3567899999999987654322211           1122221110   11222    477887775    46


Q ss_pred             eeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCC---Ccccc-ccCCCcceeeeccccc-Cc
Q 011777          252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH---YWGFE-TQGVIPDIVTMAKGIG-NG  326 (477)
Q Consensus       252 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~---~~~~~-~~gv~pDivt~sK~lg-~G  326 (477)
                      +++|++++.++++|.+ ++.+++++|.++|++||+++|+||+|++|.++|..   +..++ ..+..+.+.++||.++ +|
T Consensus       164 ~~~v~l~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G  242 (386)
T 1u08_A          164 TRLVILNTPHNPSATV-WQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTG  242 (386)
T ss_dssp             EEEEEEESSCTTTCCC-CCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGG
T ss_pred             CEEEEEeCCCCCCCcc-CCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcc
Confidence            7888887778888854 57889999999999999999999999998776621   22222 2456666778999999 69


Q ss_pred             cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccce
Q 011777          327 LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGL  406 (477)
Q Consensus       327 ~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~  406 (477)
                      +|+|++++++++++.+....+..+++.++++++++.++|+..  +++.+++++..+..++.+.+...+++........|+
T Consensus       243 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~  320 (386)
T 1u08_A          243 WKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAE--PEHYLALPDFYRQKRDILVNALNESRLEILPCEGTY  320 (386)
T ss_dssp             GCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC--THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSS
T ss_pred             cceEEEEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCceE
Confidence            999999999999988876555568888999999999998854  233333444334444444433333332222223367


Q ss_pred             eEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCC------CCCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777          407 MVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGL------HGNVFRIKPPMCFTKDDADFLVDALDY  472 (477)
Q Consensus       407 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~------~~~~iRi~p~~~~t~e~i~~~l~~l~~  472 (477)
                      ++++++....  .    ....++.+.|. ++||++.++..      ..+++||+++  .++++|++++++|++
T Consensus       321 ~~~~~~~~~~--~----~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~  385 (386)
T 1u08_A          321 FLLVDYSAVS--T----LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLRQ  385 (386)
T ss_dssp             EEEEECTTTC--C----SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred             EEEEecCCCC--C----CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence            8888763210  0    01346777776 68999988742      2468999876  489999999999864

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.98  E-value=5.9e-30  Score=256.13  Aligned_cols=324  Identities=15%  Similarity=0.130  Sum_probs=231.9

Q ss_pred             EeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhh------CCCCCCEEEEeCChHHHHHHHH
Q 011777           99 LDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASK------MPGNLKVVYFVNSGTEANELAM  172 (477)
Q Consensus        99 lD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~------~~~~~~~v~~~~sGseA~~~Al  172 (477)
                      |||.++..  ++| .+|++.+++.+++++.......|..+...++++.++++      ++.+.++|++++|+++|++.++
T Consensus        33 idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~  109 (369)
T 3cq5_A           33 IRLNTNEN--PYP-PSEALVADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLL  109 (369)
T ss_dssp             EECSSCCC--CSC-CCHHHHHHHHHHHHHHGGGTTSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHH
T ss_pred             eeccCCCC--CCC-CCHHHHHHHHHHHHhcccccccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHH
Confidence            89988775  566 68999999999987642212233333234666666666      5556678999999999999999


Q ss_pred             HHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCe
Q 011777          173 LMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKV  252 (477)
Q Consensus       173 ~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~  252 (477)
                      +.+.  .+++.|++.+++||++.......+.           .+..++...    .+..|    ++++++.++.   .++
T Consensus       110 ~~l~--~~gd~Vl~~~~~y~~~~~~~~~~g~-----------~~~~v~~~~----~~~~d----~~~l~~~i~~---~~~  165 (369)
T 3cq5_A          110 QAFG--GPGRTALGFQPSYSMHPILAKGTHT-----------EFIAVSRGA----DFRID----MDVALEEIRA---KQP  165 (369)
T ss_dssp             HHHC--STTCEEEEEESSCTHHHHHHHHTTC-----------EEEEEECCT----TSSCC----HHHHHHHHHH---HCC
T ss_pred             HHhc--CCCCEEEEcCCChHHHHHHHHHcCC-----------EEEEecCCc----CCCCC----HHHHHHHhhc---cCC
Confidence            8763  3567899999999987654433221           112222111    11112    5778888762   156


Q ss_pred             eEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cccC-CCcceeeeccccc-Cccce
Q 011777          253 AGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQG-VIPDIVTMAKGIG-NGLPL  329 (477)
Q Consensus       253 a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~g-v~pDivt~sK~lg-~G~pi  329 (477)
                      ++|+++++++++|.+.+    ++++.++|+.+++++|+||+|++|++.. ..+.. +.++ ..+++.++||.++ +|+|+
T Consensus       166 ~~v~~~~~~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~  240 (369)
T 3cq5_A          166 DIVFVTTPNNPTGDVTS----LDDVERIINVAPGIVIVDEAYAEFSPSP-SATTLLEKYPTKLVVSRTMSKAFDFAGGRL  240 (369)
T ss_dssp             SEEEEESSCTTTCCCCC----HHHHHHHHHHCSSEEEEECTTGGGCCSC-CGGGGTTTCTTTEEEEEESSSTTSCGGGCC
T ss_pred             CEEEEeCCCCCCCCCCC----HHHHHHHHHhCCCEEEEECCchhhcCCc-chHHHHhhCCCCEEEEEechHhcCCcccce
Confidence            78888888888897765    6777888888889999999999887643 33332 3344 5567778999998 69999


Q ss_pred             EEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeE
Q 011777          330 GAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMV  408 (477)
Q Consensus       330 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~  408 (477)
                      |++++++++++.+....  .+|+.|+++++++.++|+..+. ++..++++++.+++.+.|++.    + +...++.|.++
T Consensus       241 G~~~~~~~~~~~l~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-~~~~~~~~~~~  313 (369)
T 3cq5_A          241 GYFVANPAFIDAVMLVR--LPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL----G-YAVVPSESNFV  313 (369)
T ss_dssp             EEEEECTHHHHHHHTTS--CTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH----T-CEEECCSSSEE
T ss_pred             EEEEeCHHHHHHHHHcC--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC----C-CEECCCCCeEE
Confidence            99999999988887543  4577899999999999975321 345666667777777777653    2 23345678888


Q ss_pred             EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          409 GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       409 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      ++++..          ...++.+.|.++||.+.+++ ..+++||+++   +++|+++++++|+++++
T Consensus       314 ~~~~~~----------~~~~l~~~l~~~gi~v~~~~-~~~~iRis~~---~~~~i~~~~~~l~~~~~  366 (369)
T 3cq5_A          314 FFGDFS----------DQHAAWQAFLDRGVLIRDVG-IAGHLRTTIG---VPEENDAFLDAAAEIIK  366 (369)
T ss_dssp             EEECCS----------SHHHHHHHHHHTTEECBCCS-CTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred             EEECCC----------CHHHHHHHHHHCCEEEEECC-CCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence            886620          13567888899999999873 3578999876   79999999999999875

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.98  E-value=4.9e-31  Score=267.84  Aligned_cols=340  Identities=15%  Similarity=0.066  Sum_probs=231.5

Q ss_pred             EEeecCCcccccCCCCCHHHHHHHHHHHhhc--cccccccCChHHHHHHHHHHhhCC--CCCC-EEEEeCChHHHHHHHH
Q 011777           98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL--QHATTIYLHHAIADFAEALASKMP--GNLK-VVYFVNSGTEANELAM  172 (477)
Q Consensus        98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~--~~~~~~~~~~~~~~l~~~La~~~~--~~~~-~v~~~~sGseA~~~Al  172 (477)
                      +|||..+..  .+| .+|++.+++.+++++.  .+....+..+.+..+++.+.+.++  .+.+ +|++++||++|++.++
T Consensus        27 ~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~  103 (411)
T 2o0r_A           27 AVNLGQGFP--DED-GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAV  103 (411)
T ss_dssp             CEESSCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHH
T ss_pred             eeeccCcCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHH
Confidence            789888764  466 6899999999999762  111111223445556666655434  3456 8999999999999999


Q ss_pred             HHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcC-CCCCCCHHHHHHHHHHHHhccCCCC
Q 011777          173 LMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYH-GSFGSDAARYAQDLQDHIDFGTSGK  251 (477)
Q Consensus       173 ~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~~  251 (477)
                      +.+.  .+++.|++.+++||+........+             ...+.+|.... ..+..|    +++|++.++    .+
T Consensus       104 ~~~~--~~gd~Vl~~~~~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~~d----~~~l~~~l~----~~  160 (411)
T 2o0r_A          104 LGLV--EPGSEVLLIEPFYDSYSPVVAMAG-------------AHRVTVPLVPDGRGFALD----ADALRRAVT----PR  160 (411)
T ss_dssp             HHHC--CTTCEEEEEESCCTTHHHHHHHTT-------------CEEEEEECEEETTEEECC----HHHHHHHCC----TT
T ss_pred             HHhc--CCCCEEEEeCCCcHhHHHHHHHcC-------------CEEEEeeccccccCCCCC----HHHHHHhhc----cC
Confidence            9763  356789999999998755432221             11111111100 001111    578888775    36


Q ss_pred             eeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccc----cCCCcceeeeccccc-Cc
Q 011777          252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET----QGVIPDIVTMAKGIG-NG  326 (477)
Q Consensus       252 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~----~gv~pDivt~sK~lg-~G  326 (477)
                      +++|+++++++++|. .++.+++++|.++|++||+++|+||+|++|.++|.....+..    .+..+.+.++||.++ .|
T Consensus       161 ~~~v~l~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G  239 (411)
T 2o0r_A          161 TRALIINSPHNPTGA-VLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTG  239 (411)
T ss_dssp             EEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTT
T ss_pred             ceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCcc
Confidence            788888887888885 457889999999999999999999999998877632222222    334455668999998 69


Q ss_pred             cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc
Q 011777          327 LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGR  404 (477)
Q Consensus       327 ~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~  404 (477)
                      +|+|++++++++++.+.......+++.++++++++.++|+..++  ++..++++++.+++.+.|+++    +........
T Consensus       240 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~  315 (411)
T 2o0r_A          240 WKIGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEI----GFAVHDSYG  315 (411)
T ss_dssp             TCEEEEECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH----TCEECCCCB
T ss_pred             ceEEEEeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc----CCEecCCCe
Confidence            99999999999998887655556788888899999999875421  344556666666666666654    322222334


Q ss_pred             ceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC---------------CCEEEEeCCCCCcHHHHHHHHH
Q 011777          405 GLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH---------------GNVFRIKPPMCFTKDDADFLVD  468 (477)
Q Consensus       405 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~---------------~~~iRi~p~~~~t~e~i~~~l~  468 (477)
                      |+++++++....    .  ....++.+.|+ ++||++.++..+               .+++||++.  .++++++++++
T Consensus       316 g~~~~~~~~~~~----~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~~~~  387 (411)
T 2o0r_A          316 TYFLCADPRPLG----Y--DDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDEAIR  387 (411)
T ss_dssp             SSEEEEECGGGT----C--CCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHHHHH
T ss_pred             eEEEEEecCCCC----C--CCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHHHHH
Confidence            667888774210    0  01346777776 679999886322               468999875  48999999999


Q ss_pred             HHHHHHhh
Q 011777          469 ALDYSMSK  476 (477)
Q Consensus       469 ~l~~~l~~  476 (477)
                      +|++++++
T Consensus       388 ~l~~~~~~  395 (411)
T 2o0r_A          388 RLSVLAER  395 (411)
T ss_dssp             HHGGGGC-
T ss_pred             HHHHHHhc
Confidence            99887653

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.97  E-value=8.5e-31  Score=265.67  Aligned_cols=345  Identities=13%  Similarity=0.015  Sum_probs=233.9

Q ss_pred             CCCCEEEeecCCcccc-cCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhC--CCCCCEEEEeCChHHH
Q 011777           93 ENGRRYLDAFAGIVTV-SCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKM--PGNLKVVYFVNSGTEA  167 (477)
Q Consensus        93 ~dG~~ylD~~~g~~~~-~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~--~~~~~~v~~~~sGseA  167 (477)
                      .+|+.++||..+..+. .++ .+|++.+++.+++++..  +....+..+.+..+++.+.+..  +.+.++|++++||++|
T Consensus        35 ~~g~~~i~l~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a  113 (406)
T 1xi9_A           35 KKGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEA  113 (406)
T ss_dssp             HTTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred             HcCCCEEEecCCCCCcCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHH
Confidence            4688999999887643 456 47999999999987632  1111122344555555555432  4456789999999999


Q ss_pred             HHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc
Q 011777          168 NELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG  247 (477)
Q Consensus       168 ~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~  247 (477)
                      ++.+++.+.  .+++.|++.+++||++.......+.           .+..++..  ....+..|    +++|++.++  
T Consensus       114 l~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~--~~~~~~~d----~~~l~~~l~--  172 (406)
T 1xi9_A          114 LQLIFGALL--DPGDEILVPGPSYPPYTGLVKFYGG-----------KPVEYRTI--EEEDWQPD----IDDIRKKIT--  172 (406)
T ss_dssp             HHHHHHHHC--CTTCEEEEEESCCHHHHHHHHHTTC-----------EEEEEEEE--GGGTSEEC----HHHHHHHCC--
T ss_pred             HHHHHHHhC--CCCCEEEEcCCCCccHHHHHHHcCC-----------EEEEeecC--CCcCCcCC----HHHHHHhhC--
Confidence            999999763  3567899999999987654432211           11122111  00011111    478888775  


Q ss_pred             CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCc-cee--eeccccc
Q 011777          248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIP-DIV--TMAKGIG  324 (477)
Q Consensus       248 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~p-Div--t~sK~lg  324 (477)
                        .++++|++++.++++|. .++++++++|.++|++||+++|+||+|++|.+.+ ....+..++... +++  ++||.++
T Consensus       173 --~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~i~~~s~sK~~~  248 (406)
T 1xi9_A          173 --DRTKAIAVINPNNPTGA-LYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEG-EHISPGSLTKDVPVIVMNGLSKVYF  248 (406)
T ss_dssp             --TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS-CCCCHHHHCSSSCEEEEEESTTTTC
T ss_pred             --cCceEEEEECCCCCCCC-CcCHHHHHHHHHHHHHcCCEEEEEcCccccccCC-CCCCHHHcCCCceEEEEeccccccC
Confidence              35778888877888885 4578899999999999999999999999987744 333343332111 343  6899998


Q ss_pred             -CccceEEEE--eCH----HHHHhhcccccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhC
Q 011777          325 -NGLPLGAVV--TTP----EIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERH  395 (477)
Q Consensus       325 -~G~pig~v~--~~~----~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~  395 (477)
                       +|+|+|+++  +++    ++++.+....... ++.|+++++++.++|+...+  +++.++++++.+++.+.|++    .
T Consensus       249 ~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~  323 (406)
T 1xi9_A          249 ATGWRLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNE----I  323 (406)
T ss_dssp             CGGGCCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHT----S
T ss_pred             CCccEEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHh----C
Confidence             699999999  898    9888876543333 77889999999999964332  34455555666666555544    3


Q ss_pred             CCceeeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHH
Q 011777          396 DIIGDVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDA  469 (477)
Q Consensus       396 ~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~  469 (477)
                      +.+..+.+. |+++++.+....      .....++.+.|+ ++||.+.++..+    .+++||+++  +++++|++++++
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~--~~~~~i~~~~~~  395 (406)
T 1xi9_A          324 PGISTTKPQGAFYIFPKIEVGP------WKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL--PPIEILEEAMDR  395 (406)
T ss_dssp             TTEECCCCCBSSEECCEECSCS------CSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHH
T ss_pred             CCCeeecCCeeEEEEEecCccC------CCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec--CCHHHHHHHHHH
Confidence            333333343 556666663200      011456777886 889999887533    478999987  899999999999


Q ss_pred             HHHHHhh
Q 011777          470 LDYSMSK  476 (477)
Q Consensus       470 l~~~l~~  476 (477)
                      |++++++
T Consensus       396 l~~~l~~  402 (406)
T 1xi9_A          396 FEKFMKE  402 (406)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998875

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.97  E-value=6.9e-31  Score=268.69  Aligned_cols=353  Identities=10%  Similarity=0.030  Sum_probs=243.4

Q ss_pred             eeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-ccc--cccCChHHHHHHHHHHhhCC--CCCCEE
Q 011777           84 EGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-HAT--TIYLHHAIADFAEALASKMP--GNLKVV  158 (477)
Q Consensus        84 ~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-~~~--~~~~~~~~~~l~~~La~~~~--~~~~~v  158 (477)
                      .+....+++.+|+.+|||.+|..  +++ .+|+|.+++.+++.... ...  ..+..+.+..+++.+.+..+  .+.++|
T Consensus        32 ~~~~~~~~~~~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i  108 (437)
T 3g0t_A           32 VALVTNLEKATGTKFCRMEMGVP--GLP-APQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARAC  108 (437)
T ss_dssp             HHHHHHHHHHHTCCCEECCCCSC--CSC-CCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGE
T ss_pred             HHHHHHHHHhcCCCEEeccCcCC--CCC-CCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccE
Confidence            44556677888999999999885  454 68999999999987522 111  11112334444444443322  346789


Q ss_pred             EEeCChHHHHHHHHHHHHhccCCc--eEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHH
Q 011777          159 YFVNSGTEANELAMLMARLSTGNL--GMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARY  236 (477)
Q Consensus       159 ~~~~sGseA~~~Al~~ar~~~~~~--~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (477)
                      ++|+||++|++.+++.+....+++  +|++..++|+++.......+.           .+..++..   ...+.    ..
T Consensus       109 ~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~---~~~~~----~d  170 (437)
T 3g0t_A          109 VPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQ-----------KFESFDLF---EYRGE----KL  170 (437)
T ss_dssp             EEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTC-----------CCEEEEGG---GGCTT----HH
T ss_pred             EEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCC-----------EEEEEeec---CCCCc----cC
Confidence            999999999999999775113556  899999999987665544322           11222211   00111    12


Q ss_pred             HHHHHHHHhccCCCCeeEEEe-cccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCC-C-------ccc
Q 011777          237 AQDLQDHIDFGTSGKVAGFIA-ETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH-Y-------WGF  307 (477)
Q Consensus       237 ~~~le~~i~~~~~~~~a~vi~-epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~-~-------~~~  307 (477)
                      +++|+++++   ..++++|++ +| ++++|. ..+.+.+++|.++|++||+++|+||+|++|.+.+.. .       ..+
T Consensus       171 ~~~l~~~l~---~~~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~  245 (437)
T 3g0t_A          171 REKLESYLQ---TGQFCSIIYSNP-NNPTWQ-CMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSV  245 (437)
T ss_dssp             HHHHHHHHT---TTCCCEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCG
T ss_pred             HHHHHHHHh---cCCceEEEEeCC-CCCCCC-cCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhcc
Confidence            578888884   134555554 55 677774 557788999999999999999999999987665411 1       222


Q ss_pred             cc-cCCCcceeeeccccc-CccceEEEEeCHHHHH-h-----------------hcccccccCCCCcHHHHHHHHHHHHh
Q 011777          308 ET-QGVIPDIVTMAKGIG-NGLPLGAVVTTPEIAN-V-----------------MAQKIQFNTFGGNPVCSAGGLAVLRV  367 (477)
Q Consensus       308 ~~-~gv~pDivt~sK~lg-~G~pig~v~~~~~~~~-~-----------------~~~~~~~~t~~~~~~~~aaa~a~l~~  367 (477)
                      .. .+....+.++||.++ .|+|+|++++++++++ .                 +.......+++.|+++++++.++|+.
T Consensus       246 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  325 (437)
T 3g0t_A          246 ANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKA  325 (437)
T ss_dssp             GGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhC
Confidence            22 344445668999999 7999999999999998 7                 66555556788999999999999987


Q ss_pred             hc-----hhhHHHHHHHHHHHHHHHHHHHHHhCCCcee------ee-ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHH
Q 011777          368 ID-----KERRQAHCADVGSHLLGRLRTLQERHDIIGD------VR-GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRE  435 (477)
Q Consensus       368 l~-----~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------v~-g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~  435 (477)
                      .+     .++..++++++.+++.+.|+++    +....      .+ ..|.++++.+. .        ....++.+.|.+
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~l~~~L~~  392 (437)
T 3g0t_A          326 CNDGEYNFRDSVIEYGRKARIMKKMFLDN----GFNIVYDKDGNEPLADGFYFTVGYK-G--------MDSSKLIEKFVR  392 (437)
T ss_dssp             HHTTSCCHHHHHHHHHHHHHHHHHHHHTT----TEEESSCEETTEECCSSSEEEEEET-T--------CCHHHHHHHHHH
T ss_pred             cHhHHHHHHHHHHHHHHHHHHHHHHHHHc----CCEEeccccCCCCCceeEEEEEecC-C--------CCHHHHHHHHHH
Confidence            54     2345666666666666666554    32211      14 56778888873 1        124578889999


Q ss_pred             cCceeeccCCCC----CEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          436 LGVLVGKGGLHG----NVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       436 ~Gv~v~~~~~~~----~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +||.+.++..++    +++||+++.. +++++++++++|.+++++
T Consensus       393 ~gi~v~~~~~~~~~~~~~iRis~~~~-~~e~i~~~~~~l~~~~~~  436 (437)
T 3g0t_A          393 YGMCAITLKTTGSKRNEAMRICTSLL-PESQFPDLEKRLQMLNAE  436 (437)
T ss_dssp             TTEECEESTTTTCCCTTCEEEECSSS-CGGGHHHHHHHHHHHHHH
T ss_pred             cCeEEeeccccCCCCCCEEEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence            999999875332    6799998844 999999999999998764

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.97  E-value=1.2e-30  Score=264.94  Aligned_cols=338  Identities=15%  Similarity=0.114  Sum_probs=231.2

Q ss_pred             CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHHH
Q 011777           93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEAN  168 (477)
Q Consensus        93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA~  168 (477)
                      .+|+.++||.++..  .++ .+|++.+++ ++++...  +....+..+.+..+++.+.+..+  .+.+++++++||++|+
T Consensus        40 ~~g~~~i~l~~~~~--~~~-~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~  115 (409)
T 2gb3_A           40 KRGVRIHHLNIGQP--DLK-TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAI  115 (409)
T ss_dssp             HTTCEEEECSSCCC--CSC-CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHH
T ss_pred             hcCCCEEeccCCCC--CCC-CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHH
Confidence            46889999988775  456 478999999 8886532  11111223445556666555432  3457899999999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      +.+++.+.  .+++.|++.+++||++.......+.           .+..++..  ....+..     +++|+++++   
T Consensus       116 ~~~~~~~~--~~gd~Vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~--~~~~~~~-----~~~l~~~l~---  172 (409)
T 2gb3_A          116 LFSFAVIA--NPGDEILVLEPFYANYNAFAKIAGV-----------KLIPVTRR--MEEGFAI-----PQNLESFIN---  172 (409)
T ss_dssp             HHHHHHHC--CTTCEEEEEESCCTHHHHHHHHHTC-----------EEEEEECC--GGGTSCC-----CTTGGGGCC---
T ss_pred             HHHHHHhC--CCCCEEEEcCCCchhHHHHHHHcCC-----------EEEEeccC--CCCCCcc-----HHHHHHhhC---
Confidence            99999763  3567899999999987654332211           11112111  0001110     145666554   


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCC-Cccee--eeccccc-
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV-IPDIV--TMAKGIG-  324 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv-~pDiv--t~sK~lg-  324 (477)
                       .++++|+++++++++|.+ ++++++++|.++|++||++||+||+|+++.++| .+++. ..+. ..|++  ++||.++ 
T Consensus       173 -~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~-~~~~~-~~~~~~~~i~~~s~sK~~g~  248 (409)
T 2gb3_A          173 -ERTKGIVLSNPCNPTGVV-YGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG-EFASA-LSIESDKVVVIDSVSKKFSA  248 (409)
T ss_dssp             -TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCG-GGSCCTTEEEEEESTTTTTC
T ss_pred             -cCCeEEEECCCCCCCCCC-cCHHHHHHHHHHHHHcCCEEEEECcccccccCC-CCCCc-cccCCCCEEEEecchhccCC
Confidence             367888888778888854 578899999999999999999999999988776 44443 2222 23654  7899998 


Q ss_pred             CccceEEEEeCH-HHHHhhcccccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceee
Q 011777          325 NGLPLGAVVTTP-EIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDV  401 (477)
Q Consensus       325 ~G~pig~v~~~~-~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v  401 (477)
                      +|+|+|++++++ ++++.+.......+ +.|+++++++.++|+...+  +++.++++++.+++.+.|+++  ....+ ..
T Consensus       249 ~G~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~-~~  324 (409)
T 2gb3_A          249 CGARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH--GLKRF-TK  324 (409)
T ss_dssp             GGGCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT--TCCCB-CC
T ss_pred             ccceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc--Cceee-eC
Confidence            689999999998 89888776544455 8899999999999864211  334555666666666666654  22220 12


Q ss_pred             eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc------CceeeccCCC-------CCEEEEeCCCCCcHHHHHHHHH
Q 011777          402 RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLREL------GVLVGKGGLH-------GNVFRIKPPMCFTKDDADFLVD  468 (477)
Q Consensus       402 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~------Gv~v~~~~~~-------~~~iRi~p~~~~t~e~i~~~l~  468 (477)
                      +..|+++++++. .        ....++.+.|+++      ||.+.++..+       .+++||+++  +++++++++++
T Consensus       325 ~~~~~~~~~~~~-~--------~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~~  393 (409)
T 2gb3_A          325 PSGAFYITAELP-V--------EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAID  393 (409)
T ss_dssp             CSBSSEEEEECS-S--------SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHH
T ss_pred             CCeeEEEEEEeC-C--------CCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHHHH
Confidence            334667777663 1        0145688888887      9999886322       579999887  89999999999


Q ss_pred             HHHHHHhh
Q 011777          469 ALDYSMSK  476 (477)
Q Consensus       469 ~l~~~l~~  476 (477)
                      +|++++++
T Consensus       394 ~l~~~l~~  401 (409)
T 2gb3_A          394 VLMEGLKM  401 (409)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.97  E-value=5.3e-30  Score=259.83  Aligned_cols=350  Identities=11%  Similarity=0.004  Sum_probs=231.3

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc---ccccccCChHHHHHHHHHHhhCC--CCC-CEEEEeCChHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ---HATTIYLHHAIADFAEALASKMP--GNL-KVVYFVNSGTEANE  169 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~---~~~~~~~~~~~~~l~~~La~~~~--~~~-~~v~~~~sGseA~~  169 (477)
                      ..+|||..|..  .++ .+|+|.+++.+++....   +....+..+.+..+++.+.+.++  .+. ++|++++||++|++
T Consensus        23 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~   99 (410)
T 3e2y_A           23 PSVVNLGQGFP--DIS-PPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLF   99 (410)
T ss_dssp             TTSEECSSCCC--CSC-CCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred             CCeEEecCCCC--CCC-CCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence            45788887764  343 58999999999987531   11111223445556666555432  334 68999999999999


Q ss_pred             HHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCc-------CCCCCCCHHHHHHHHHH
Q 011777          170 LAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPY-------HGSFGSDAARYAQDLQD  242 (477)
Q Consensus       170 ~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~le~  242 (477)
                      .+++.+.  .+++.|++..++|+++.......+..           +..++.....       ...+..|    ++++++
T Consensus       100 ~~~~~~~--~~gd~vl~~~p~~~~~~~~~~~~g~~-----------~~~~~~~~~~~~g~~~~~~~~~~d----~~~l~~  162 (410)
T 3e2y_A          100 NSIQGLV--DPGDEVIIMVPFYDCYEPMVRMAGAV-----------PVFIPLRSKPTDGMKWTSSDWTFD----PRELES  162 (410)
T ss_dssp             HHHHHHC--CTTCEEEEEESCCTTHHHHHHHTTCE-----------EEEEECEECCCCSSCCBGGGEECC----HHHHHT
T ss_pred             HHHHHhc--CCCCEEEEeCCCchhhHHHHHHcCCE-----------EEEEeccccccccccccccCCcCC----HHHHHh
Confidence            9999763  36678999999999876544333211           1111111000       0001111    467777


Q ss_pred             HHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc----CCCcceee
Q 011777          243 HIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ----GVIPDIVT  318 (477)
Q Consensus       243 ~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~----gv~pDivt  318 (477)
                      .++    .++++|++++.++++|. .++++.+++|.++|++||+++|+||+|++|.++|..+..+...    +...++.+
T Consensus       163 ~~~----~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S  237 (410)
T 3e2y_A          163 KFS----SKTKAIILNTPHNPLGK-VYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGS  237 (410)
T ss_dssp             TCC----TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEE
T ss_pred             hcC----CCceEEEEeCCCCCCCc-CcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEec
Confidence            664    46888888888888885 4578889999999999999999999999998877333333222    23345568


Q ss_pred             eccccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHh-----hchhhHHHHHHHHHHHHHHHHHHHH
Q 011777          319 MAKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRV-----IDKERRQAHCADVGSHLLGRLRTLQ  392 (477)
Q Consensus       319 ~sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~-----l~~~~~~~~~~~~~~~l~~~L~~l~  392 (477)
                      +||.+| +|+|+||+++++++++.+....+..+++.++++++++.++|+.     ...+++.++.++..+..++.+.+..
T Consensus       238 ~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  317 (410)
T 3e2y_A          238 AGKTFSVTGWKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLL  317 (410)
T ss_dssp             HHHHSSCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhcCCCCceEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999 7999999999999999887766677899999999999999874     1123344444444444444444444


Q ss_pred             HhCCCceeeeccceeEEEEEeeCCCCCC---ccHHHHHHHHHH-HHHcCceeeccCCC---------CCEEEEeCCCCCc
Q 011777          393 ERHDIIGDVRGRGLMVGMELVTDRKEKT---PAKAETAVLFEK-LRELGVLVGKGGLH---------GNVFRIKPPMCFT  459 (477)
Q Consensus       393 ~~~~~~~~v~g~g~~~~i~~~~~~~~~~---~~~~~~~~~~~~-l~~~Gv~v~~~~~~---------~~~iRi~p~~~~t  459 (477)
                      .+++.....+..|+++++++........   .......++.+. +.++||++.++..+         .+++||+  +..+
T Consensus       318 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis--~~~~  395 (410)
T 3e2y_A          318 NSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFC--FIKK  395 (410)
T ss_dssp             HTTTCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEE--CCCC
T ss_pred             HHCCCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEE--EcCC
Confidence            4445444445567788888753211000   000112345554 45779999987543         3789997  4569


Q ss_pred             HHHHHHHHHHHHH
Q 011777          460 KDDADFLVDALDY  472 (477)
Q Consensus       460 ~e~i~~~l~~l~~  472 (477)
                      +++|++++++|++
T Consensus       396 ~e~l~~~l~~l~~  408 (410)
T 3e2y_A          396 DSTLDAAEEIFRA  408 (410)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999975

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.97  E-value=3.4e-30  Score=260.25  Aligned_cols=335  Identities=14%  Similarity=0.054  Sum_probs=232.3

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc------ccccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ------HATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTE  166 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~------~~~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGse  166 (477)
                      |+.+|||..|..   ....+|+|.+++.+++++..      +....+..+.+.++++++.+.++  .+.++|+||+||++
T Consensus        34 ~~~~i~l~~~~~---~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~  110 (398)
T 3ele_A           34 KENVYDFSIGNP---SIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAA  110 (398)
T ss_dssp             GGGCEECCSCCC---CSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHH
T ss_pred             CCCeEEeecCCC---CCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHH
Confidence            567999998743   22478999999999987631      11111223456666666665543  45678999999999


Q ss_pred             HHHHHHHHHHhccCC-ceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHh
Q 011777          167 ANELAMLMARLSTGN-LGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHID  245 (477)
Q Consensus       167 A~~~Al~~ar~~~~~-~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~  245 (477)
                      |++.+++.+..  ++ +.|++.+++||++.......             |...+.+|.... .+..|    +++|+++++
T Consensus       111 al~~~~~~l~~--~g~d~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~~-~~~~d----~~~l~~~l~  170 (398)
T 3ele_A          111 SLSICFRALTS--DAYDEFITIAPYFPEYKVFVNAA-------------GARLVEVPADTE-HFQID----FDALEERIN  170 (398)
T ss_dssp             HHHHHHHHHCC--STTCEEEEESSCCTHHHHHHHHT-------------TCEEEEECCCTT-TSSCC----HHHHHHTCC
T ss_pred             HHHHHHHHHcC--CCCCEEEEeCCCchhhHHHHHHc-------------CCEEEEEecCCc-CCcCC----HHHHHHHhC
Confidence            99999997732  44 89999999999876554333             222222222111 11112    477887775


Q ss_pred             ccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHH------hCcEEEEcCcccCccCCCCCCcc--ccccCCCccee
Q 011777          246 FGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK------AGGVCIADEVQTGFGRTGSHYWG--FETQGVIPDIV  317 (477)
Q Consensus       246 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~------~gillI~DEv~~gfgr~G~~~~~--~~~~gv~pDiv  317 (477)
                          .++++|+++..+|++|. .++.+.+++|.++|++      ||+++|+||+|++|.++| ....  .+..+....+.
T Consensus       171 ----~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~i~~~  244 (398)
T 3ele_A          171 ----AHTRGVIINSPNNPSGT-VYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDG-IKVPFVTKYYDNTLVCY  244 (398)
T ss_dssp             ----TTEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTT-CCCCCGGGTCSSEEEEE
T ss_pred             ----cCCCEEEEcCCCCCCCC-CCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCC-CCcCChHhhcCCeEEEE
Confidence                36777777666778885 5577889999999999      999999999999998876 2222  23445556666


Q ss_pred             eeccccc-CccceEEEEeCHHHHH------hhccc-ccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 011777          318 TMAKGIG-NGLPLGAVVTTPEIAN------VMAQK-IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLR  389 (477)
Q Consensus       318 t~sK~lg-~G~pig~v~~~~~~~~------~~~~~-~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~  389 (477)
                      ++||.++ +|+|+||+++++++.+      .+... ...++++.+++++.++.+.++   .....++++++.+++.+.|+
T Consensus       245 s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~l~~~L~  321 (398)
T 3ele_A          245 SYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQG---ATGDINAYKENRDLLYEGLT  321 (398)
T ss_dssp             ESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTT---CCCCHHHHHHHHHHHHHHHH
T ss_pred             ehhhcCCCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHH
Confidence            8999999 7999999999987432      22221 223467778888888776654   33356778888888888888


Q ss_pred             HHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC--CCEEEEeCCCCCcHHHHHHHH
Q 011777          390 TLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH--GNVFRIKPPMCFTKDDADFLV  467 (477)
Q Consensus       390 ~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l  467 (477)
                      ++    +........|.++++.+...         ...++.+.|.++||++.++..+  .+++||++.  +++++|++++
T Consensus       322 ~~----g~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~e~i~~~l  386 (398)
T 3ele_A          322 RI----GYHCFKPDGAFYMFVKALED---------DSNAFCEKAKEEDVLIVAADGFGCPGWVRISYC--VDREMIKHSM  386 (398)
T ss_dssp             HH----TCCEECCSBSSEEEEECSSS---------CHHHHHHHHHTTTEECEESGGGTCTTEEEEECC--SCHHHHHHHH
T ss_pred             Hc----CCeecCCCeeEEEEEEcCCC---------CHHHHHHHHHHCCEEEeCccccCCCCeEEEEec--CCHHHHHHHH
Confidence            76    22112222355577765211         1456788899999999987543  479999864  7999999999


Q ss_pred             HHHHHHHhh
Q 011777          468 DALDYSMSK  476 (477)
Q Consensus       468 ~~l~~~l~~  476 (477)
                      ++|++++++
T Consensus       387 ~~l~~~l~~  395 (398)
T 3ele_A          387 PAFEKIYKK  395 (398)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998864

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.97  E-value=8.6e-31  Score=269.17  Aligned_cols=347  Identities=12%  Similarity=0.069  Sum_probs=232.7

Q ss_pred             eCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccCC-hHHHHHHHHHHhhC----CCCCCEEEEeCCh
Q 011777           92 DENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLH-HAIADFAEALASKM----PGNLKVVYFVNSG  164 (477)
Q Consensus        92 d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~-~~~~~l~~~La~~~----~~~~~~v~~~~sG  164 (477)
                      +.+|+.+|||..|..  .++ .+|+|++++.+++++..  +....|.. ....+|++.+++++    +.+.++|+|++|+
T Consensus        65 ~~~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~  141 (449)
T 3qgu_A           65 KNPDAKIISLGIGDT--TEP-LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGS  141 (449)
T ss_dssp             HCTTCCCEECSSCCC--CCC-CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCH
T ss_pred             hCCCCCEEEeeCCCC--CCC-CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCH
Confidence            347899999998854  343 68999999999998643  11222332 33567788888776    5566899999999


Q ss_pred             HHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHH
Q 011777          165 TEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHI  244 (477)
Q Consensus       165 seA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i  244 (477)
                      +++++.+ ...  ..+++.|++.+++||++.......+.....+. .....+..++...  ...+.       .++++  
T Consensus       142 ~~al~~~-~~l--~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~-~~~~~~~~~~~~~--~~~~~-------~~~~~--  206 (449)
T 3qgu_A          142 KCDIARI-QMM--FGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNG-TGFDGIEYMVCNP--DNHFF-------PDLSK--  206 (449)
T ss_dssp             HHHHHHH-HHH--HCSSSCEEEEESCCTHHHHHHHHHTCSCCBCS-SSBTTEEEEECCG--GGTTC-------CCGGG--
T ss_pred             HHHHHHH-HHH--hCCCCEEEEcCCCChhHHHHHHHcCCcccccc-cccceeEEEeccc--ccCCc-------CChhH--
Confidence            9999988 322  23678899999999998776655443211100 0001122222211  11111       11211  


Q ss_pred             hccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccc----cCCCcceeeec
Q 011777          245 DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET----QGVIPDIVTMA  320 (477)
Q Consensus       245 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~----~gv~pDivt~s  320 (477)
                        .  .++++|+++..+|++|. .++.+++++|.++|++||+++|+||+|++|+++|.....+..    .++.+++.+||
T Consensus       207 --~--~~~~~v~l~~p~NPtG~-~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  281 (449)
T 3qgu_A          207 --A--KRTDIIFFCSPNNPTGA-AATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFS  281 (449)
T ss_dssp             --C--CCCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECS
T ss_pred             --c--CCCCEEEEeCCCCCCCC-cCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecch
Confidence              1  35667777666777774 568889999999999999999999999999887632333322    23445577899


Q ss_pred             cccc-CccceEEEEeCHHHHH--------hhcccccccCCCCcHHHHHHHHHHHHhhc---hhhHHHHHHHHHHHHHHHH
Q 011777          321 KGIG-NGLPLGAVVTTPEIAN--------VMAQKIQFNTFGGNPVCSAGGLAVLRVID---KERRQAHCADVGSHLLGRL  388 (477)
Q Consensus       321 K~lg-~G~pig~v~~~~~~~~--------~~~~~~~~~t~~~~~~~~aaa~a~l~~l~---~~~~~~~~~~~~~~l~~~L  388 (477)
                      |++| +|+|+||+++++++++        .+.......+++.++++++++.++++...   .++..++++++.+++++.|
T Consensus       282 K~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  361 (449)
T 3qgu_A          282 KYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTF  361 (449)
T ss_dssp             GGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999 7999999999988765        23333334555789999999999886521   1345566666777777766


Q ss_pred             HHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccCCC----CCEEEEeCCCCCcHHHH
Q 011777          389 RTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGGLH----GNVFRIKPPMCFTKDDA  463 (477)
Q Consensus       389 ~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----~~~iRi~p~~~~t~e~i  463 (477)
                      +++    +........|.++++.+. .        ....++.+.|+++ ||++.++..+    .+++||+  +..++++|
T Consensus       362 ~~~----g~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis--~~~~~e~i  426 (449)
T 3qgu_A          362 TEM----GFSVYGGDDAPYIWVGFP-G--------KPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRAS--AFGSRENI  426 (449)
T ss_dssp             HHT----TCCEEESSSSSEEEEECT-T--------SCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHH
T ss_pred             HHC----CCeeeCCCCeeEEEEECC-C--------CCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEE--ecCCHHHH
Confidence            654    322222234778888763 1        1135677777765 9999987433    4799997  56699999


Q ss_pred             HHHHHHHHHHHhh
Q 011777          464 DFLVDALDYSMSK  476 (477)
Q Consensus       464 ~~~l~~l~~~l~~  476 (477)
                      ++++++|++++++
T Consensus       427 ~~~l~~l~~~~~~  439 (449)
T 3qgu_A          427 LEAVRRFKEAYGK  439 (449)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998864

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.97  E-value=2.8e-30  Score=258.81  Aligned_cols=303  Identities=14%  Similarity=0.114  Sum_probs=219.4

Q ss_pred             ChHHHHHHHHHHhhC-CCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCC
Q 011777          137 HHAIADFAEALASKM-PGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGE  215 (477)
Q Consensus       137 ~~~~~~l~~~La~~~-~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~  215 (477)
                      .+...+|++.+++++ +.+.+++++++||++|++.+++...  .+++.|++..++|++........+             
T Consensus        62 ~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~g-------------  126 (375)
T 3op7_A           62 IEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI--EPGDHVISLYPTYQQLYDIPKSLG-------------  126 (375)
T ss_dssp             TTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC--CTTCEEEEEESSCTHHHHHHHHTT-------------
T ss_pred             CCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc--CCCCEEEEeCCCchhHHHHHHHcC-------------
Confidence            334578899999987 3566789999999999999998763  366889999999998755433322             


Q ss_pred             eeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc
Q 011777          216 IHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT  295 (477)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~  295 (477)
                      ...+.++......+..|    +++++++++    +++++|+++++++++|. .++++++++|.++|++||+++|+||+|+
T Consensus       127 ~~~~~v~~~~~~~~~~d----~~~l~~~l~----~~~~~v~~~~~~nptG~-~~~~~~l~~i~~la~~~~~~li~De~~~  197 (375)
T 3op7_A          127 AEVDLWQIEEENGWLPD----LEKLRQLIR----PTTKMICINNANNPTGA-VMDRTYLEELVEIASEVGAYILSDEVYR  197 (375)
T ss_dssp             CEEEEEEEEGGGTTEEC----HHHHHHHCC----TTCCEEEEESSCTTTCC-CCCHHHHHHHHHHHHTTTCEEEEECCSC
T ss_pred             CEEEEEeccccCCCCCC----HHHHHHhhc----cCCeEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEcccc
Confidence            11111111111111111    578888775    46788888888888885 5588899999999999999999999999


Q ss_pred             CccCCCCCCccccccCCCcceeeeccccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHH
Q 011777          296 GFGRTGSHYWGFETQGVIPDIVTMAKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQ  374 (477)
Q Consensus       296 gfgr~G~~~~~~~~~gv~pDivt~sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~  374 (477)
                      +|++.+ .....+.++..+++.+|||.++ +|+|+|++++++++++.+......++++.++++++++.++++..  +++.
T Consensus       198 ~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~  274 (375)
T 3op7_A          198 SFSELD-VPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAHY--QEIL  274 (375)
T ss_dssp             CCSSSC-CCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTH--HHHH
T ss_pred             cccccC-CCchhhhcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhcc--HHHH
Confidence            988764 3333456677788889999999 79999999999999999988777788899999999999988753  3344


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceeeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHH-HHcCceeeccCCC--CCEE
Q 011777          375 AHCADVGSHLLGRLRTLQERHDIIGDVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKL-RELGVLVGKGGLH--GNVF  450 (477)
Q Consensus       375 ~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~--~~~i  450 (477)
                      ++.++..+..++.+.+...+++.+..+.+. |.+.++.+....        ...++.+.+ .++||.+.++..+  .+++
T Consensus       275 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ll~~~gi~v~~g~~~~~~~~i  346 (375)
T 3op7_A          275 ERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDM--------PMEDFCLQLLQEHGVLLVPGNRFERDGYV  346 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSS--------CHHHHHHHHHHHHCEECEEGGGGTCTTEE
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCC--------CHHHHHHHHHHhCCEEEeChhhhCCCCeE
Confidence            555544455555555555455555444444 445566653211        134566666 5889999987544  4789


Q ss_pred             EEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          451 RIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       451 Ri~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      |++  +..+++++++++++|++++++
T Consensus       347 Ri~--~~~~~~~i~~~l~~l~~~l~~  370 (375)
T 3op7_A          347 RLG--FACEQETLIKGLEKLSQFLRR  370 (375)
T ss_dssp             EEC--CCSCHHHHHHHHHHHHHHHGG
T ss_pred             EEE--ecCCHHHHHHHHHHHHHHHHH
Confidence            996  456679999999999999875

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.97  E-value=4.5e-30  Score=254.98  Aligned_cols=331  Identities=11%  Similarity=0.051  Sum_probs=220.1

Q ss_pred             EeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeC
Q 011777           83 VEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVN  162 (477)
Q Consensus        83 ~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~  162 (477)
                      .+++|.+++|.+|+.+|||.++..  +++ .+|+|.+++.+++...    ..|..+...+++++|+++++.+.++|++|+
T Consensus         2 ~~~~g~~~~~~~g~~~id~~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~i~~t~   74 (350)
T 3fkd_A            2 IFGHGDEGITPLSSEIVNFSTTVW--TDG-DKDHLEKHLVENLNCI----RHYPEPDAGTLRQMLAKRNSVDNNAILVTN   74 (350)
T ss_dssp             --------------CCEECSCCSC--CCS-CCHHHHHHHHHTGGGG----GSCCCTTCHHHHHHHHHHTTCCGGGEEEES
T ss_pred             cccccchHhhhccccEEEccCCCC--CCC-CCHHHHHHHHHhHhHH----hcCCCCcHHHHHHHHHHHhCcCHHHEEEcC
Confidence            467899999999999999998874  455 6899999998877432    234444447899999999987778999999


Q ss_pred             ChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHH
Q 011777          163 SGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQD  242 (477)
Q Consensus       163 sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~  242 (477)
                      ||++|++.+++...    ++.|++..++|++........+.           .+..++.. .....+.            
T Consensus        75 g~~~al~~~~~~l~----gd~Vi~~~p~~~~~~~~~~~~g~-----------~~~~v~~~-~~~~~~~------------  126 (350)
T 3fkd_A           75 GPTAAFYQIAQAFR----GSRSLIAIPSFAEYEDACRMYEH-----------EVCFYPSN-EDIGEAD------------  126 (350)
T ss_dssp             HHHHHHHHHHHHTT----TCEEEEEESCCHHHHHHHHHTTC-----------EEEEEETT-SCGGGSC------------
T ss_pred             CHHHHHHHHHHHHC----CCEEEEeCCCcHHHHHHHHHcCC-----------eEEEEecC-CccccCc------------
Confidence            99999999998654    67899999999987654433321           11222210 1000011            


Q ss_pred             HHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCC-ccccccCCCcceeeecc
Q 011777          243 HIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHY-WGFETQGVIPDIVTMAK  321 (477)
Q Consensus       243 ~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~-~~~~~~gv~pDivt~sK  321 (477)
                            ..++++|+++..++++|.+. +.+.+++|.++|++  .++|+||+|++|++.+... ...+..+....+.+|||
T Consensus       127 ------~~~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~--~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK  197 (350)
T 3fkd_A          127 ------FSNMDFCWLCNPNNPDGRLL-QRTEILRLLNDHPD--TTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSH  197 (350)
T ss_dssp             ------CTTCSEEEEESSCTTTCCCC-CHHHHHHHHHHCTT--SEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHH
T ss_pred             ------cCCCCEEEEeCCCCCcCCCC-CHHHHHHHHHhCCC--CEEEEECchhhhccCcchhhHHhhcCCCEEEEecCch
Confidence                  13556666666677788655 44445555555554  4999999999998776211 12223334445568999


Q ss_pred             ccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc--hhhHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 011777          322 GIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID--KERRQAHCADVGSHLLGRLRTLQERHDII  398 (477)
Q Consensus       322 ~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~--~~~~~~~~~~~~~~l~~~L~~l~~~~~~~  398 (477)
                      .++ .|+|+||+++++++++.+....  .+++.|+++++++.++|+..+  .+...+ ..++.+++.+.|++    ++.+
T Consensus       198 ~~~~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~L~~----~~~~  270 (350)
T 3fkd_A          198 AYGIPGLRIGYIVANKDFMKRVAAFS--TPWAVNALAIEAAKFILIHPAQFTLPIRK-WQRNTVDFITALNR----LDGV  270 (350)
T ss_dssp             HHSCGGGCCEEEECCHHHHHHHHTTC--CTTCSCHHHHHHHHHHHHCTTTTCCCHHH-HHHHHHHHHHHHHH----STTE
T ss_pred             hccCcchheEeEEeCHHHHHHHHHhC--CCCCCCHHHHHHHHHHHhCHHHHHHHHHH-HHHHHHHHHHHHhc----CCCc
Confidence            999 7999999999999999887644  467889999999999998654  122333 33555666665544    4445


Q ss_pred             eeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHH-cCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          399 GDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       399 ~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      ...++.|.++++.+...         ...++.+.|++ +||.+.++..+    .+++||+++   +++++++++++|+++
T Consensus       271 ~~~~~~~~~~~~~~~~~---------~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~---~~~~~~~l~~al~~~  338 (350)
T 3fkd_A          271 EVHPSGTTFFLLRLKKG---------TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ---RPAQNQLFIKALETF  338 (350)
T ss_dssp             EECCCSSSEEEEEESSS---------CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred             EECCCCCcEEEEECCCC---------CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHH
Confidence            45567788888777321         24578888988 99999987533    579999754   789999999999988


Q ss_pred             Hhh
Q 011777          474 MSK  476 (477)
Q Consensus       474 l~~  476 (477)
                      +++
T Consensus       339 ~~~  341 (350)
T 3fkd_A          339 LEK  341 (350)
T ss_dssp             HTC
T ss_pred             HHH
Confidence            753

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.97  E-value=6.4e-30  Score=261.00  Aligned_cols=346  Identities=14%  Similarity=0.092  Sum_probs=226.1

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHh---------hccccccccCChH-HHHHHHHHHhhC----C----CCCCEE
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSK---------LLQHATTIYLHHA-IADFAEALASKM----P----GNLKVV  158 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~---------~~~~~~~~~~~~~-~~~l~~~La~~~----~----~~~~~v  158 (477)
                      .++||.++.  +++|  +|.+.+++.++..         ... ....|..+. ..++++.+++++    +    .+.++|
T Consensus        37 ~~i~l~~~~--~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i  111 (428)
T 1iay_A           37 GVIQMGLAE--NQLC--LDLIEDWIKRNPKGSICSEGIKSFK-AIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERV  111 (428)
T ss_dssp             SBEECSSCC--CCSS--HHHHHHHHHHCTTSSTTC----CHH-HHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSC
T ss_pred             ceeeecccc--chhh--HHHHHHHHHhccccccccccccccH-hhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhE
Confidence            578887655  3555  4788888875421         000 011232221 344444444443    2    446789


Q ss_pred             EEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHH
Q 011777          159 YFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQ  238 (477)
Q Consensus       159 ~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (477)
                      ++++|+++|++.+++.+..  +++.|++.+++||++........            |...+.+|......+..|    ++
T Consensus       112 ~~~~G~~~ai~~~~~~~~~--~gd~Vl~~~p~y~~~~~~~~~~~------------g~~~~~v~~~~~~~~~~d----~~  173 (428)
T 1iay_A          112 VMAGGATGANETIIFCLAD--PGDAFLVPSPYYPAFNRDLRWRT------------GVQLIPIHCESSNNFKIT----SK  173 (428)
T ss_dssp             EEEEHHHHHHHHHHHHHCC--TTCEEEEESSCCTTHHHHTTTTT------------CCEEEEECCCTTTTTCCC----HH
T ss_pred             EEccChHHHHHHHHHHhCC--CCCeEEEccCCCcchHHHHHHhc------------CCEEEEeecCCccCCcCC----HH
Confidence            9999999999999997643  55789999999998754332221            222222222111122222    47


Q ss_pred             HHHHHHhcc--CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc---ccc---
Q 011777          239 DLQDHIDFG--TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF---ETQ---  310 (477)
Q Consensus       239 ~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~---~~~---  310 (477)
                      ++++.++..  ...++++|+++..++++|. .++++++++|.++|++||+++|+||+|++|+++|..+..+   ...   
T Consensus       174 ~l~~~l~~~~~~~~~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~  252 (428)
T 1iay_A          174 AVKEAYENAQKSNIKVKGLILTNPSNPLGT-TLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEM  252 (428)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGG
T ss_pred             HHHHHHHHHHhcCCceEEEEEcCCCCCCCC-cCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhcccccc
Confidence            777777521  2235777666656677775 5688999999999999999999999999987765222122   111   


Q ss_pred             -CCCcc----eeeeccccc-CccceEEEEe-CHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc---h--hhHHHHHH
Q 011777          311 -GVIPD----IVTMAKGIG-NGLPLGAVVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID---K--ERRQAHCA  378 (477)
Q Consensus       311 -gv~pD----ivt~sK~lg-~G~pig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~---~--~~~~~~~~  378 (477)
                       ++.+|    +.++||.+| +|+|+|++++ ++++++.+...  ..+++.|+++++++.++|+..+   +  ++..++++
T Consensus       253 ~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  330 (428)
T 1iay_A          253 TYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKM--SSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLG  330 (428)
T ss_dssp             TTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHH--HTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHH--HhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence             23366    558999998 7999999999 68888877643  2346789999999988887532   1  33455566


Q ss_pred             HHHHHHHHHHHHHHHhCCCceeeec-cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccCCC----CCEEEE
Q 011777          379 DVGSHLLGRLRTLQERHDIIGDVRG-RGLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGGLH----GNVFRI  452 (477)
Q Consensus       379 ~~~~~l~~~L~~l~~~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----~~~iRi  452 (477)
                      ++++++.+.|+++    +. ...++ .|+|+++++....  ..+......++.+.|+++ ||++.++..+    .+++||
T Consensus       331 ~~~~~l~~~L~~~----g~-~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRi  403 (428)
T 1iay_A          331 KRHKHFTNGLEVV----GI-KCLKNNAGLFCWMDLRPLL--RESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRV  403 (428)
T ss_dssp             HHHHHHHHHHHHT----TC-CBCCCSSSSEEEEECGGGC--SSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEE
T ss_pred             HHHHHHHHHHHhc----CC-cccCCCeeEEEEEechhhc--CCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEE
Confidence            6666666666554    22 22334 5788888874321  111122345788888876 9999987543    468999


Q ss_pred             eCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          453 KPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       453 ~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +++ .++++++++++++|++++++
T Consensus       404 s~~-~~~~e~i~~~~~~l~~~l~~  426 (428)
T 1iay_A          404 CFA-NMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             ECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred             EEe-cCCHHHHHHHHHHHHHHHhc
Confidence            987 57999999999999998864

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.97  E-value=7.9e-30  Score=254.28  Aligned_cols=327  Identities=14%  Similarity=0.109  Sum_probs=229.6

Q ss_pred             CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHH
Q 011777           93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAM  172 (477)
Q Consensus        93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al  172 (477)
                      .+|+.+|||.++..  .++ .+|+|++++.+++.........|..+...+++++|+++++.+.++|+|++||++|++.++
T Consensus        23 ~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~   99 (360)
T 3hdo_A           23 PDIASWIKLNTNEN--PYP-PSPEVVKAILEELGPDGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLI   99 (360)
T ss_dssp             SCCTTSEECSSCCC--SSC-CCHHHHHHHHHHHTTTCGGGGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred             ccccceeeccCCCC--CCC-CCHHHHHHHHHHHhcccchhhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHH
Confidence            57889999998875  454 689999999999876421122344444578899999998766789999999999999999


Q ss_pred             HHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCe
Q 011777          173 LMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKV  252 (477)
Q Consensus       173 ~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~  252 (477)
                      +...  .+++.|++..++|++........+.           .+..++...    .+.         ++++++..   ++
T Consensus       100 ~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~~----~~~---------~~~l~~~~---~~  150 (360)
T 3hdo_A          100 RAFA--AEGEEIGYVHPSYSYYGTLAEVQGA-----------RVRTFGLTG----DFR---------IAGFPERY---EG  150 (360)
T ss_dssp             HHHC--CTTCEEEEESSSCTHHHHHHHHHTC-----------EEEEECBCT----TSS---------BTTCCSSB---CS
T ss_pred             HHHh--CCCCEEEEcCCChHHHHHHHHHCCC-----------EEEEeeCCC----CCC---------HHHHHhhc---CC
Confidence            8663  3567899999999987655443321           112222111    111         12222211   22


Q ss_pred             eEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeeccccc-CccceEE
Q 011777          253 AGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIG-NGLPLGA  331 (477)
Q Consensus       253 a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg-~G~pig~  331 (477)
                      ++++++..++++|.+.+    +++|.++|+++|+++|+||+|++|...+ .....+..+....+.++||.++ +|+|+|+
T Consensus       151 ~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~  225 (360)
T 3hdo_A          151 KVFFLTTPNAPLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESN-ALELVRRHENVVVTRTLSKSYSLAGMRIGL  225 (360)
T ss_dssp             SEEEEESSCTTTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCC-CTHHHHHCSSEEEEEESTTTTSCTTSCCEE
T ss_pred             CEEEEeCCCCCCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcc-hhHHhccCCCEEEEecchHhhcCCccceee
Confidence            35666666778887777    7889999999999999999999885333 2222234455566778999998 6899999


Q ss_pred             EEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEE
Q 011777          332 VVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGM  410 (477)
Q Consensus       332 v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i  410 (477)
                      +++++++++.+....  .+++.|+++++++.++|+..+. ++..++++++.+++.+.|+++    + +...++.|.++++
T Consensus       226 ~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-~~~~~~~~~~~~~  298 (360)
T 3hdo_A          226 AIARPEVIAALDKIR--DHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI----G-YDVIPSQGNYLFA  298 (360)
T ss_dssp             EECCHHHHHHHHHHS--CSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT----T-CEECCCSSSEEEE
T ss_pred             EeeCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----C-CEEcCCCccEEEE
Confidence            999999998887543  4578999999999999985211 234455555555555555443    3 3345667888887


Q ss_pred             EEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--CCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          411 ELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--HGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      .+..         ....++.+.|.++||++.+++.  ..+++||+++   +++|+++++++|+++.+
T Consensus       299 ~~~~---------~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~e~~~l~~al~~~~~  353 (360)
T 3hdo_A          299 TPPD---------RDGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG---TREEMEQTLAALKEIGE  353 (360)
T ss_dssp             ECTT---------CCHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred             ECCC---------CCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHhc
Confidence            6521         0245788889999999988643  2478999755   89999999999998764

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.97  E-value=8.7e-31  Score=267.61  Aligned_cols=341  Identities=11%  Similarity=0.037  Sum_probs=227.6

Q ss_pred             CEEEeecCCcccccCCCCCHHH--HHHHHHHHhhccccccccCCh-HHHHHHHHHHhhC-----CCCCCE---EEEeCCh
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDV--LNAIFEQSKLLQHATTIYLHH-AIADFAEALASKM-----PGNLKV---VYFVNSG  164 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v--~~Av~~~l~~~~~~~~~~~~~-~~~~l~~~La~~~-----~~~~~~---v~~~~sG  164 (477)
                      +.++||..|.+. .+|+ +|.+  .+++.++++..  ....|... ...++++.+++++     +.+.++   |++|+||
T Consensus        47 ~~~i~l~~g~~~-~~~~-~~~~~~~~a~~~~~~~~--~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~  122 (430)
T 2x5f_A           47 STTYNATIGMAT-NKDG-KMFASSLDAMFNDLTPD--EIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNAL  122 (430)
T ss_dssp             TCSEECCCSSCE-ETTE-ECCCHHHHTTBSSCCGG--GTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHH
T ss_pred             CCcEEeeeeecc-CCCC-chhhHHHHHHHHhcCcc--cccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCc
Confidence            568999988864 6775 5666  77777665431  11123322 2455666666655     555677   9999999


Q ss_pred             HHHHHHHHHHHHhccCCceEEEEccCccCCcccccc-cccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHH
Q 011777          165 TEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIG-LTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDH  243 (477)
Q Consensus       165 seA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~  243 (477)
                      ++|++.+++...  .+++.|++.+++||++...... .+             ...+.+|..... +..|    +++++++
T Consensus       123 ~~al~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~g-------------~~~~~~~~~~~~-~~~d----~~~l~~~  182 (430)
T 2x5f_A          123 THGLSLVGDLFV--NQDDTILLPEHNWGNYKLVFNTRNG-------------ANLQTYPIFDKD-GHYT----TDSLVEA  182 (430)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEEESSCCTHHHHHHTTTTC-------------CEEEEECCBCTT-SCBC----SHHHHHH
T ss_pred             hHHHHHHHHHHh--CCCCEEEEcCCcCccHHHHHHHhcC-------------CeEEEEeccCcc-CCcC----HHHHHHH
Confidence            999999999763  2567899999999997655433 21             122222211100 1112    3788888


Q ss_pred             HhccCCCCeeE-EEecccCCCCCeeeCCchhHHHHHHHHHH-----hCcEEEEcCcccCccCCCCCCccc--cccCCCcc
Q 011777          244 IDFGTSGKVAG-FIAETIQGVGGAVELAPGYLKLVYDIVRK-----AGGVCIADEVQTGFGRTGSHYWGF--ETQGVIPD  315 (477)
Q Consensus       244 i~~~~~~~~a~-vi~epi~~~~G~~~~~~~~l~~l~~l~~~-----~gillI~DEv~~gfgr~G~~~~~~--~~~gv~pD  315 (477)
                      ++.. +.++++ ++++| +|++|. .++.+++++|.++|++     ||+++|+||+|++|.+.|..+..+  ...+..++
T Consensus       183 l~~~-~~~~~~v~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~  259 (430)
T 2x5f_A          183 LQSY-NKDKVIMILNYP-NNPTGY-TPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSN  259 (430)
T ss_dssp             HHHC-CSSEEEEEECSS-CTTTCC-CCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCT
T ss_pred             HHhc-CCCCEEEEEcCC-CCCCCC-cCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCC
Confidence            8632 225555 55555 777774 5688999999999999     999999999999998776212222  22122333


Q ss_pred             ------eeeeccccc-CccceEEEEe---CHHHHHhhcccccc----cCCCCcHHHHHHHHHHHH-hhch-hh---HHHH
Q 011777          316 ------IVTMAKGIG-NGLPLGAVVT---TPEIANVMAQKIQF----NTFGGNPVCSAGGLAVLR-VIDK-ER---RQAH  376 (477)
Q Consensus       316 ------ivt~sK~lg-~G~pig~v~~---~~~~~~~~~~~~~~----~t~~~~~~~~aaa~a~l~-~l~~-~~---~~~~  376 (477)
                            +.++||.++ +|+|+||+++   ++++++.+......    .+++.|+++++++.++|+ ...- +.   ..++
T Consensus       260 ~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  339 (430)
T 2x5f_A          260 AILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQT  339 (430)
T ss_dssp             TEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             cceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHH
Confidence                  457899998 6999999999   99998888654433    678899999999999997 4311 11   3444


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceeeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHH-cCceeeccCCCCCEEEEeC
Q 011777          377 CADVGSHLLGRLRTLQERHDIIGDVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGGLHGNVFRIKP  454 (477)
Q Consensus       377 ~~~~~~~l~~~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~~iRi~p  454 (477)
                      ++++.+++.+.|++.....+ +....+. |+++++++. .        ....++.+.|++ +||++.+++  .+++||++
T Consensus       340 ~~~~~~~l~~~L~~~~~~~g-~~~~~~~~g~~~~~~~~-~--------~~~~~~~~~l~~~~gi~v~~g~--~~~iRis~  407 (430)
T 2x5f_A          340 LKERYEVTKEVVYADQYHSH-WQAYDFNSGYFMAIKVH-D--------VDPEALRKHLIDKYSIGVIALN--ATDIRIAF  407 (430)
T ss_dssp             HHHHHHHHHHHHTCGGGTTT-EEECCCCBSSEEEEEES-S--------SCHHHHHHHHHHHHCEECEECS--SSEEEEEG
T ss_pred             HHHHHHHHHHHHHhhCCCCC-ceeeCCCceEEEEeCCC-C--------CCHHHHHHHHHHhCCEEEecCC--CCeEEEEE
Confidence            44444455444432110223 2233343 566888873 1        014568888887 999999873  57899998


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhh
Q 011777          455 PMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       455 ~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +. .+++++++++++|++++++
T Consensus       408 ~~-~~~e~i~~~~~~l~~~l~~  428 (430)
T 2x5f_A          408 SC-VEKDDIPHVFDSIAKAIDD  428 (430)
T ss_dssp             GG-SCGGGHHHHHHHHHHHHHH
T ss_pred             ec-CCHHHHHHHHHHHHHHHHh
Confidence            85 4899999999999998865

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.97  E-value=1.4e-28  Score=248.73  Aligned_cols=333  Identities=19%  Similarity=0.188  Sum_probs=231.4

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccc----ccc-CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT----TIY-LHHAIADFAEALASKMPGNLKVVYFVNSGTEAN  168 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~----~~~-~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~  168 (477)
                      ||++|+||.++.. ..+|+ +|+|.+++.+++++.....    ..+ ..+...+++++|+++++. .+.++| ++|++++
T Consensus        44 ~g~~~i~~~~~~~-~~~~~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~~~i~~-~sG~~a~  119 (401)
T 2bwn_A           44 GKQDITVWCGNDY-LGMGQ-HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK-EAALVF-SSAYNAN  119 (401)
T ss_dssp             CEEEEEECSCSCT-TSGGG-CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC-SEEEEE-SCHHHHH
T ss_pred             CCCcEEEeeCCCc-ccCCC-CHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCC-CcEEEE-CCcHHHH
Confidence            7899999987542 12333 7899999999998743211    112 346788999999999975 345555 7778899


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      ..+++++....+++.|++..+.|++....... .            |...+.+|.      + |    .++++++++...
T Consensus       120 ~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~-~------------g~~~~~v~~------~-d----~~~le~~l~~~~  175 (401)
T 2bwn_A          120 DATLSTLRVLFPGLIIYSDSLNHASMIEGIKR-N------------AGPKRIFRH------N-D----VAHLRELIAADD  175 (401)
T ss_dssp             HHHHHHHHHHSTTCEEEEETTCCHHHHHHHHH-S------------CCCEEEECT------T-C----HHHHHHHHHHSC
T ss_pred             HHHHHHHhcCCCCCEEEECchhhHHHHHHHHH-c------------CCeEEEEcC------C-C----HHHHHHHHHhhc
Confidence            99988643222456777777777655433211 1            122222221      1 1    478888887543


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc--CccCCCCCCccccccCC--Ccc--eeeeccc
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT--GFGRTGSHYWGFETQGV--IPD--IVTMAKG  322 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~--gfgr~G~~~~~~~~~gv--~pD--ivt~sK~  322 (477)
                      .+++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+  .||++| ..+. ..+++  .+|  +.++||+
T Consensus       176 ~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g-~~~~-~~~~~~~~~~i~~~s~sK~  249 (401)
T 2bwn_A          176 PAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRG-AGVA-ERDGLMHRIDIFNGTLAKA  249 (401)
T ss_dssp             TTSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTS-CCHH-HHHTCGGGCSEEEEESSST
T ss_pred             cCCceEEEEecCcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCC-ceee-eccCccccCcEEEeechhh
Confidence            346889999999999998776    8999999999999999999999  346666 3222 33343  234  4489999


Q ss_pred             ccC-ccceEEEEeCHHHHHhhcccc--cccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCC
Q 011777          323 IGN-GLPLGAVVTTPEIANVMAQKI--QFNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHD  396 (477)
Q Consensus       323 lg~-G~pig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~  396 (477)
                      ++. |   |++++++++++.+....  ...+.+.++++++++.++++.+++   ++..++++++.+++.+.|+++  ...
T Consensus       250 ~~~~G---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~  324 (401)
T 2bwn_A          250 YGVFG---GYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL--GMP  324 (401)
T ss_dssp             TCSCC---EEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH--TCC
T ss_pred             ccCCC---CEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC--CCc
Confidence            984 6   89999999888765321  112334467889999999998765   467888888999999988876  333


Q ss_pred             CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC-----CCEEEEeCCCCCcHHHHHHHHHHH
Q 011777          397 IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH-----GNVFRIKPPMCFTKDDADFLVDAL  470 (477)
Q Consensus       397 ~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~-----~~~iRi~p~~~~t~e~i~~~l~~l  470 (477)
                      ..   ...|.++++.+.        ......++.+.|+ ++||.+.++..+     .+++||+++..++++|+++++++|
T Consensus       325 ~~---~~~~~~~~~~~~--------~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l  393 (401)
T 2bwn_A          325 II---DHGSHIVPVVIG--------DPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAM  393 (401)
T ss_dssp             BC---CCSSSCEEEECC--------CHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHH
T ss_pred             cc---CCCCCeEEEEeC--------ChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHH
Confidence            22   234557777762        2234567888886 789999876421     258999999989999999999999


Q ss_pred             HHHHhh
Q 011777          471 DYSMSK  476 (477)
Q Consensus       471 ~~~l~~  476 (477)
                      ++++++
T Consensus       394 ~~~~~~  399 (401)
T 2bwn_A          394 DLLWAR  399 (401)
T ss_dssp             HHHC--
T ss_pred             HHHHHh
Confidence            998765

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.97  E-value=4.8e-30  Score=260.48  Aligned_cols=345  Identities=12%  Similarity=0.038  Sum_probs=223.2

Q ss_pred             CCCEEEeecCCcccccCCC--CCHHHHHHHHHHHhhcccccccc-CChHHHHHHHHHHhhCCC------CCCEEEE--eC
Q 011777           94 NGRRYLDAFAGIVTVSCGH--CHPDVLNAIFEQSKLLQHATTIY-LHHAIADFAEALASKMPG------NLKVVYF--VN  162 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh--~~p~v~~Av~~~l~~~~~~~~~~-~~~~~~~l~~~La~~~~~------~~~~v~~--~~  162 (477)
                      +|+.++||..|.+..+.||  .+|.|.+++.+++..... ...| ......++++.++++++.      +.++|+|  |+
T Consensus        28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~  106 (412)
T 1ajs_A           28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSL-NHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSL  106 (412)
T ss_dssp             CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTC-CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEE
T ss_pred             CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhh-ccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECC
Confidence            3677899999886555555  358999999988732111 1122 233345666777666522      3578999  99


Q ss_pred             ChHHHHHHHHHHHHhccCC-----ceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHH
Q 011777          163 SGTEANELAMLMARLSTGN-----LGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYA  237 (477)
Q Consensus       163 sGseA~~~Al~~ar~~~~~-----~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (477)
                      ||++|++.++++++...++     +.|++..++||++.......+..          .+..++..  ....+..|    +
T Consensus       107 gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~----------~~~~~~~~--~~~~~~~d----~  170 (412)
T 1ajs_A          107 GGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFK----------DIRSYRYW--DTEKRGLD----L  170 (412)
T ss_dssp             HHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCS----------CEEEEECE--ETTTTEEC----H
T ss_pred             CcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCc----------eeEEEeee--cCCCCccC----H
Confidence            9999999998866544455     78999999999976654443221          01222210  00111112    4


Q ss_pred             HHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCC--CCCccccccCCCcc
Q 011777          238 QDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTG--SHYWGFETQGVIPD  315 (477)
Q Consensus       238 ~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G--~~~~~~~~~gv~pD  315 (477)
                      +++++.++.. ..++.++++...++++| ..++.+++++|.++|++||+++|+||+|++|+++|  ..++.+..+...+|
T Consensus       171 ~~l~~~l~~~-~~~~~~v~~~~p~nptG-~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
T 1ajs_A          171 QGFLSDLENA-PEFSIFVLHACAHNPTG-TDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGF  248 (412)
T ss_dssp             HHHHHHHHHS-CTTCEEEEESSSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTC
T ss_pred             HHHHHHHHhC-CCCcEEEEECCCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCC
Confidence            7788887632 22455665444455556 46788999999999999999999999999998865  12333332211233


Q ss_pred             ----eeeecccccC-ccceEEEEe---CHHHHHh----hcccccccCCC-CcHHHHHHHHHHHHhhc--------hhhHH
Q 011777          316 ----IVTMAKGIGN-GLPLGAVVT---TPEIANV----MAQKIQFNTFG-GNPVCSAGGLAVLRVID--------KERRQ  374 (477)
Q Consensus       316 ----ivt~sK~lg~-G~pig~v~~---~~~~~~~----~~~~~~~~t~~-~~~~~~aaa~a~l~~l~--------~~~~~  374 (477)
                          +.++||.++. |+|+||+++   ++++++.    +... +..+++ .|+++++++.++|+..+        .++..
T Consensus       249 ~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  327 (412)
T 1ajs_A          249 ELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKI-VRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMA  327 (412)
T ss_dssp             CEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHH-HHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred             cEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHH-HhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHH
Confidence                5579999997 999999999   8874443    3321 334555 58999999999998642        13455


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeC
Q 011777          375 AHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKP  454 (477)
Q Consensus       375 ~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p  454 (477)
                      ++++++++++.+.|+++..........+..|+++++.+        +    ...+.+.+.++||++.++      +||++
T Consensus       328 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~l~~~gv~v~~~------~Ris~  389 (412)
T 1ajs_A          328 DRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGL--------N----PKQVEYLINQKHIYLLPS------GRINM  389 (412)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCC--------C----HHHHHHHHHTTCEECCTT------SEEEG
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCC--------C----HHHHHHHHHhCCEEecCC------cEEEe
Confidence            66666677777766654100012111233455555433        1    234555667889999864      59987


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhhC
Q 011777          455 PMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       455 ~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      +. ++++++++++++|+++++++
T Consensus       390 ~~-~~~~~i~~~~~~l~~~l~~~  411 (412)
T 1ajs_A          390 CG-LTTKNLDYVATSIHEAVTKI  411 (412)
T ss_dssp             GG-CCTTTHHHHHHHHHHHHHHC
T ss_pred             ee-CCHHHHHHHHHHHHHHHHhc
Confidence            63 58999999999999998763

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.97  E-value=2.1e-29  Score=250.95  Aligned_cols=318  Identities=15%  Similarity=0.158  Sum_probs=220.1

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLM  174 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~  174 (477)
                      .+.+|||.+|.  +++|++ |.+  ++    ..    ...|+.+...++++.|+++++.+.++|++++|++||++.+++.
T Consensus        28 ~~~~i~l~~~~--~~~~~~-~~v--a~----~~----~~~Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~   94 (356)
T 1fg7_A           28 GNGDVWLNANE--YPTAVE-FQL--TQ----QT----LNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRA   94 (356)
T ss_dssp             TTCSEECSSCC--CSSCCC-CCC--CC----CC----TTSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHH
T ss_pred             CCceEEeeCCC--CCCCCC-HhH--hh----hh----hccCCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHH
Confidence            35789998887  578874 555  21    11    2234444467899999999877778999999999999999997


Q ss_pred             HHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeE
Q 011777          175 ARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAG  254 (477)
Q Consensus       175 ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~  254 (477)
                      ... .|+++|++..++||++.......+             ...+.+|..  ..+..|    ++++++.++     ++++
T Consensus        95 ~~~-~g~d~Vl~~~p~~~~~~~~~~~~g-------------~~~~~v~~~--~~~~~d----~~~l~~~i~-----~~~~  149 (356)
T 1fg7_A           95 FCE-PGKDAILYCPPTYGMYSVSAETIG-------------VECRTVPTL--DNWQLD----LQGISDKLD-----GVKV  149 (356)
T ss_dssp             HCC-TTTCEEEECSSSCTHHHHHHHHHT-------------CEEEECCCC--TTSCCC----HHHHHTSCT-----TEEE
T ss_pred             HhC-CCCCEEEEeCCChHHHHHHHHHcC-------------CEEEEeeCC--CCCCCC----HHHHHHHhc-----CCCE
Confidence            642 233789999999999876554332             122222211  112212    356665543     5667


Q ss_pred             EEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cccCCCcceeeeccccc-CccceEEE
Q 011777          255 FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQGVIPDIVTMAKGIG-NGLPLGAV  332 (477)
Q Consensus       255 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~gv~pDivt~sK~lg-~G~pig~v  332 (477)
                      |+++..+|++|.+ .+.+++++|.++|+ ||+++|+||+|++|+... .++.+ +.++....+.++||.+| +|+|+||+
T Consensus       150 v~l~~p~nptG~~-~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~  226 (356)
T 1fg7_A          150 VYVCSPNNPTGQL-INPQDFRTLLELTR-GKAIVVADEAYIEFCPQA-SLAGWLAEYPHLAILRTLSKAFALAGLRCGFT  226 (356)
T ss_dssp             EEEESSCTTTCCC-CCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGG-CSGGGTTTCTTEEEEEESSSTTCCGGGCCEEE
T ss_pred             EEEeCCCCCCCCC-CCHHHHHHHHHhCC-CCCEEEEEccchhhcCCC-cHHHHHhhCCCEEEEecchHhhcCchhhhEEE
Confidence            7777777888854 57889999999999 999999999999887432 33333 33344455668999999 79999999


Q ss_pred             EeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc---hhhHHHHHHHHHHHHHHHHHHHHHhCCC-ceeeeccceeE
Q 011777          333 VTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID---KERRQAHCADVGSHLLGRLRTLQERHDI-IGDVRGRGLMV  408 (477)
Q Consensus       333 ~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~---~~~~~~~~~~~~~~l~~~L~~l~~~~~~-~~~v~g~g~~~  408 (477)
                      ++++++++.+....  .+|+.|+++++++.++|+...   -++..++++++++++.+.|++    ++. ....++.|.++
T Consensus       227 ~~~~~~~~~l~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~  300 (356)
T 1fg7_A          227 LANEEVINLLMKVI--APYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKE----IPCVEQVFDSETNYI  300 (356)
T ss_dssp             EECHHHHHHHHHHS--CSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH----STTEEEECCCSSSEE
T ss_pred             EeCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHh----CCCceEECCCCCeEE
Confidence            99999988876532  456889999999998886432   123334444455555555544    442 23345678888


Q ss_pred             EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeec-cCCC--CCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          409 GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGK-GGLH--GNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       409 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~-~~~~--~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      ++++.           ...++.+.|.++||++.+ +..+  .+++||+++   +++|+++++++|+++
T Consensus       301 ~~~~~-----------~~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~---~~~e~~~~~~~l~~~  354 (356)
T 1fg7_A          301 LARFK-----------ASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG---TREESQRVIDALRAE  354 (356)
T ss_dssp             EEEET-----------THHHHHHHHHHTTEECEECTTSTTCTTEEEEECC---CHHHHHHHHHHHHTC
T ss_pred             EEECC-----------CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC---CHHHHHHHHHHHHhh
Confidence            88772           145688888999999998 5332  368999865   689999999998764

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.97  E-value=2.2e-29  Score=253.12  Aligned_cols=333  Identities=15%  Similarity=0.094  Sum_probs=230.2

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccc----ccCC--hHHHHHHHHHHhhCCCCCCEEEEeCChHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATT----IYLH--HAIADFAEALASKMPGNLKVVYFVNSGTEA  167 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~----~~~~--~~~~~l~~~La~~~~~~~~~v~~~~sGseA  167 (477)
                      ++..|+|..      ..|+.+++|.+++.+++....+...    .|..  +...++++.|+++++.+.++|++++||++|
T Consensus        15 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a   88 (390)
T 1elu_A           15 ANKTYFNFG------GQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTG   88 (390)
T ss_dssp             TTSEECCTT------TCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHH
T ss_pred             CCeEEecCC------ccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHH
Confidence            456677643      2578889999999999876432111    2333  567899999999998766789999999999


Q ss_pred             HHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc
Q 011777          168 NELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG  247 (477)
Q Consensus       168 ~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~  247 (477)
                      ++.+++.++ ..++++|++.+++||+...........         .|...+.++......+..    .++++++.++  
T Consensus        89 ~~~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~~---------~g~~~~~v~~~~~~~~~~----d~~~l~~~i~--  152 (390)
T 1elu_A           89 CDIVLWGLD-WHQGDEILLTDCEHPGIIAIVQAIAAR---------FGITYRFFPVAATLNQGD----AAAVLANHLG--  152 (390)
T ss_dssp             HHHHHHHSC-CCTTCEEEEETTCCHHHHHHHHHHHHH---------HCCEEEEECCGGGSSSSC----HHHHHHTTCC--
T ss_pred             HHHHHhCCC-CCCCCEEEEecCcccHHHHHHHHHHHH---------hCcEEEEEcCCCCCCccc----hHHHHHHhcC--
Confidence            999999764 245688999999999875432111000         011111222110001111    1466666664  


Q ss_pred             CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHH----HhCcEEEEcCcccCccCCCCCCccccccCCCcceee--ecc
Q 011777          248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVR----KAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAK  321 (477)
Q Consensus       248 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~----~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK  321 (477)
                        +++++|+++++++++|.+.+    +++|.++|+    +||+++|+||+|+ +|...   .  +.....+|+++  ++|
T Consensus       153 --~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~-~g~~~---~--~~~~~~~d~~~~s~~K  220 (390)
T 1elu_A          153 --PKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSLP---L--DFSRLEVDYYAFTGHK  220 (390)
T ss_dssp             --TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTBC---C--CTTTSCCSEEEEESSS
T ss_pred             --CCceEEEEeccccCCceecC----HHHHHHHHhhhhhhcCcEEEEEcccc-cCCcC---C--ChhhcCCCEEEccccc
Confidence              46889999999999997776    999999999    9999999999997 54332   1  22234567775  889


Q ss_pred             cccCccceEEEEeCHHHHHhhcccc----------------------cccCCCCcHHHHHHHHHHHHhhchhh----HHH
Q 011777          322 GIGNGLPLGAVVTTPEIANVMAQKI----------------------QFNTFGGNPVCSAGGLAVLRVIDKER----RQA  375 (477)
Q Consensus       322 ~lg~G~pig~v~~~~~~~~~~~~~~----------------------~~~t~~~~~~~~aaa~a~l~~l~~~~----~~~  375 (477)
                      .+.+|.++|++++++++++.+....                      ...+.+.|+++++++.++++.+.+++    ..+
T Consensus       221 ~~~~~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~  300 (390)
T 1elu_A          221 WFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQ  300 (390)
T ss_dssp             TTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             cccCCCceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            8878888999999999887775421                      11233567888888888888765543    455


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceee---eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEE
Q 011777          376 HCADVGSHLLGRLRTLQERHDIIGDV---RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRI  452 (477)
Q Consensus       376 ~~~~~~~~l~~~L~~l~~~~~~~~~v---~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi  452 (477)
                      +++++.+++.+.|+++    +.+..+   ++.|.++.+++...        ....++.+.|.++||.+.++. ..+++||
T Consensus       301 ~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~v~~~~-~~~~iRi  367 (390)
T 1elu_A          301 AICQRSEFLWRGLNQL----PHVHCLATSAPQAGLVSFTVDSP--------LGHRAIVQKLEEQRIYLRTIA-DPDCIRA  367 (390)
T ss_dssp             HHHHHHHHHHHHHHHS----TTEEESCSSCCSSSEEEEEECSS--------SCHHHHHHHHHHTTEECEEET-TTTEEEE
T ss_pred             HHHHHHHHHHHHHHhc----CCcEEecCccccccEEEEEcCCC--------CCHHHHHHHHHHCCEEEEecC-CCCeEEE
Confidence            6666666666666553    222222   45688888877311        114568888899999999874 3579999


Q ss_pred             eCCCCCcHHHHHHHHHHHHHH
Q 011777          453 KPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       453 ~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      +++..++++|+++++++|+++
T Consensus       368 s~~~~~~~~~i~~~~~~l~~~  388 (390)
T 1elu_A          368 CCHYITDEEEINHLLARLADF  388 (390)
T ss_dssp             ECCTTCCHHHHHHHHHHHTTC
T ss_pred             ecccCCCHHHHHHHHHHHHhh
Confidence            999999999999999998753

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.97  E-value=2.3e-29  Score=251.26  Aligned_cols=327  Identities=11%  Similarity=0.068  Sum_probs=229.4

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMA  175 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~a  175 (477)
                      +.+|||.++..  +++ .+|+|++++.++++...    .|..+...+++++|+++++.+.++|++++||++|++.+++..
T Consensus        30 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~----~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l  102 (365)
T 3get_A           30 KEVIKLASNEN--PFG-TPPKAIECLRQNANKAH----LYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSK  102 (365)
T ss_dssp             SCCEECSSCCC--TTC-SCHHHHHHHHHHGGGTT----SCCCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH
T ss_pred             CceEEecCCCC--CCC-CCHHHHHHHHHHHHhhc----cCCCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHH
Confidence            67899988764  466 68999999999887422    233333368899999998776789999999999999999876


Q ss_pred             HhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEE
Q 011777          176 RLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGF  255 (477)
Q Consensus       176 r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~v  255 (477)
                      .  .++++|++..++|+++.......+             ...+.+|. .    .++. ..++++++.++    +++++|
T Consensus       103 ~--~~gd~vl~~~~~~~~~~~~~~~~g-------------~~~~~v~~-~----~~~~-~d~~~l~~~l~----~~~~~v  157 (365)
T 3get_A          103 L--NSKNAFLQAGVTFAMYEIYAKQCG-------------AKCYKTQS-I----THNL-DEFKKLYETHK----DEIKLI  157 (365)
T ss_dssp             C--CTTCEEEECSSCCTHHHHHHHHHT-------------CEEEECSS-S----SCCH-HHHHHHHHHTT----TTEEEE
T ss_pred             h--CCCCEEEEeCCChHHHHHHHHHcC-------------CEEEEEec-C----CCCC-CCHHHHHHHhC----CCCCEE
Confidence            3  356889999999987755443332             22222221 0    1122 33577877775    467888


Q ss_pred             EecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccC--CCCCCccc----cccCCCcceeeeccccc-Cccc
Q 011777          256 IAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGR--TGSHYWGF----ETQGVIPDIVTMAKGIG-NGLP  328 (477)
Q Consensus       256 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr--~G~~~~~~----~~~gv~pDivt~sK~lg-~G~p  328 (477)
                      +++..++++|.+. +.+.+++|.++| ++|+++|+||+|++|.+  .+......    +..+....+.++||.++ .|+|
T Consensus       158 ~~~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r  235 (365)
T 3get_A          158 FLCLPNNPLGECL-DASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLR  235 (365)
T ss_dssp             EEESSCTTTCCCC-CHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTC
T ss_pred             EEcCCCCCCCCCc-CHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchh
Confidence            8776677777554 666677777777 67999999999998763  22122211    22344455568999998 6999


Q ss_pred             eEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccee
Q 011777          329 LGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLM  407 (477)
Q Consensus       329 ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~  407 (477)
                      +|++++++++++.+....  .+++.|+++++++.++|+..+. ++..++++++.+++.+.|++    ++ +...++.|.+
T Consensus       236 ~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~----~g-~~~~~~~~~~  308 (365)
T 3get_A          236 IGYGIANANIISAFYKLR--APFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKK----HN-IKIIDSYTNF  308 (365)
T ss_dssp             CEEEEECHHHHHHHHHHS--CTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH----TT-CEECCCSSSE
T ss_pred             eEEEEcCHHHHHHHHHhc--CCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh----CC-CEECCCCCeE
Confidence            999999999998887543  3567899999999999874211 23344444445555554444    33 3345667888


Q ss_pred             EEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC-CCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          408 VGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH-GNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       408 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      +++.+...         ...++.+.|.++||.+.++..+ .+++||+++   +++|+++++++|+++++
T Consensus       309 ~~~~~~~~---------~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~~~i~~l~~~l~~~l~  365 (365)
T 3get_A          309 ITYFFDEK---------NSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG---TSYENEKFFTEFDKILR  365 (365)
T ss_dssp             EEEECSSS---------CHHHHHHHHHTTTEECEECGGGTCSEEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred             EEEECCCC---------CHHHHHHHHHHCCEEEEECccCCCCEEEEEcC---CHHHHHHHHHHHHHHhC
Confidence            88776321         2457888999999999987544 489999765   89999999999998763

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.97  E-value=3.8e-30  Score=259.67  Aligned_cols=345  Identities=13%  Similarity=0.045  Sum_probs=215.0

Q ss_pred             EEeCCCCEEEeecCCcccccCC--CCCHHHHHHHHHHHhhcccccccc-CChHHHHHHHHHHhhCC------CCCCEEEE
Q 011777           90 LFDENGRRYLDAFAGIVTVSCG--HCHPDVLNAIFEQSKLLQHATTIY-LHHAIADFAEALASKMP------GNLKVVYF  160 (477)
Q Consensus        90 ~~d~dG~~ylD~~~g~~~~~lG--h~~p~v~~Av~~~l~~~~~~~~~~-~~~~~~~l~~~La~~~~------~~~~~v~~  160 (477)
                      +.+..|+.+|||..|.+..+.|  +.+|+|.+++.+++++..  ...| ......++++.+++++.      .+.++|+|
T Consensus        20 ~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~   97 (396)
T 2q7w_A           20 FRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET--TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRART   97 (396)
T ss_dssp             --------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCC--CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred             HhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCccc--ccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEE
Confidence            3344567899999998766666  567999999999876531  1122 23334566666666541      12467888


Q ss_pred             --eCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHH
Q 011777          161 --VNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQ  238 (477)
Q Consensus       161 --~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (477)
                        ++||++|++.++++++...+++.|++.+++||++.......+..           +..++..  ....+..|    ++
T Consensus        98 ~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~-----------~~~~~~~--~~~~~~~d----~~  160 (396)
T 2q7w_A           98 AQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLE-----------VREYAYY--DAENHTLD----FD  160 (396)
T ss_dssp             EEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCE-----------EEEEECE--ETTTTEEC----HH
T ss_pred             EecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCc-----------eEEEecc--cCCCCCcC----HH
Confidence              99999999999998765557789999999999986655443221           1122210  00011111    57


Q ss_pred             HHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCC-CCCccccccCCCcc--
Q 011777          239 DLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTG-SHYWGFETQGVIPD--  315 (477)
Q Consensus       239 ~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G-~~~~~~~~~gv~pD--  315 (477)
                      ++++.++.. ..+++++++...++++|. .++.+++++|.++|++||+++|+||+|++|+++| ...+.+..+...+|  
T Consensus       161 ~l~~~l~~~-~~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (396)
T 2q7w_A          161 ALINSLNEA-QAGDVVLFHGCCHNPTGI-DPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKEL  238 (396)
T ss_dssp             HHHHHHTTC-CTTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCE
T ss_pred             HHHHHHHhC-CCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcE
Confidence            888888632 123566665556666674 6688999999999999999999999999997753 01223332211122  


Q ss_pred             --eeeeccccc-CccceEEEEe---CHH----HHHhhcccccccCCCCcHHHHHHHHHHHHhhc--------hhhHHHHH
Q 011777          316 --IVTMAKGIG-NGLPLGAVVT---TPE----IANVMAQKIQFNTFGGNPVCSAGGLAVLRVID--------KERRQAHC  377 (477)
Q Consensus       316 --ivt~sK~lg-~G~pig~v~~---~~~----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~--------~~~~~~~~  377 (477)
                        +.++||.++ +|+|+||+++   +++    +++.+.......+.+.|+++++++.++|+...        -++..+++
T Consensus       239 i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~  318 (396)
T 2q7w_A          239 IVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRI  318 (396)
T ss_dssp             EEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHH
T ss_pred             EEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHH
Confidence              447899999 6999999997   563    44444332222233458999999998887531        12233445


Q ss_pred             HHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCC
Q 011777          378 ADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMC  457 (477)
Q Consensus       378 ~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~  457 (477)
                      +++.+++.+.|+++....+.....+..|+++++.+        +    ...+.+.+.++||++.++      +||+++. 
T Consensus       319 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~l~~~gv~v~~~------~Ris~~~-  379 (396)
T 2q7w_A          319 QRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGL--------T----KEQVLRLREEFGVYAVAS------GRVNVAG-  379 (396)
T ss_dssp             HHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCC--------C----HHHHHHHHHHHCEECCTT------CEEEGGG-
T ss_pred             HHHHHHHHHHHHhcCCCCCcceecCCCceEEEecC--------C----HHHHHHHHHhcCeeecCC------ceEEEee-
Confidence            55555555555543100002111223356656543        1    134666777899999863      5998875 


Q ss_pred             CcHHHHHHHHHHHHHHH
Q 011777          458 FTKDDADFLVDALDYSM  474 (477)
Q Consensus       458 ~t~e~i~~~l~~l~~~l  474 (477)
                      .+++++++++++|++++
T Consensus       380 ~~~e~i~~~~~~l~~~l  396 (396)
T 2q7w_A          380 MTPDNMAPLCEAIVAVL  396 (396)
T ss_dssp             CCTTTHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHhcC
Confidence            48999999999998764

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.97  E-value=1.1e-28  Score=248.50  Aligned_cols=342  Identities=13%  Similarity=0.052  Sum_probs=226.1

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc--cccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH--ATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEANE  169 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~--~~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA~~  169 (477)
                      +|+.++||..|..  .++ .+|.+.+++.++++....  ....+..+.+..+++.+....+  .+.++|++|+||++|++
T Consensus        29 ~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~  105 (385)
T 1b5p_A           29 QGVDLVALTAGEP--DFD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALF  105 (385)
T ss_dssp             TTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHH
T ss_pred             cCCCEEEecCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHH
Confidence            3556788877764  344 368999999988865321  1111234456666666665444  34578999999999999


Q ss_pred             HHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCC
Q 011777          170 LAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS  249 (477)
Q Consensus       170 ~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~  249 (477)
                      .+++...  .+++.|++..++|+++.......             |...+.+|......+..|    .++++++++    
T Consensus       106 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~l~----  162 (385)
T 1b5p_A          106 NLFQAIL--DPGDEVIVLSPYWVSYPEMVRFA-------------GGVVVEVETLPEEGFVPD----PERVRRAIT----  162 (385)
T ss_dssp             HHHHHHC--CTTCEEEEEESCCTHHHHHHHHT-------------TCEEEEEECCGGGTTCCC----HHHHHTTCC----
T ss_pred             HHHHHhc--CCCCEEEEcCCCchhHHHHHHHc-------------CCEEEEeecCcccCCCCC----HHHHHHhcC----
Confidence            9998663  36678999999998765443322             222222222110112212    467777664    


Q ss_pred             CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc--CCCcceeeeccccc-Cc
Q 011777          250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ--GVIPDIVTMAKGIG-NG  326 (477)
Q Consensus       250 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~--gv~pDivt~sK~lg-~G  326 (477)
                      .++++|++...+|++| ..++++.+++|.++|++||++||+||+|+.|.+.| ....+...  +....+.+|||.++ .|
T Consensus       163 ~~~~~v~~~~p~NPtG-~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~i~~~s~SK~~~~~G  240 (385)
T 1b5p_A          163 PRTKALVVNSPNNPTG-AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-EHFSPGRVAPEHTLTVNGAAKAFAMTG  240 (385)
T ss_dssp             TTEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CCCCGGGTCTTTEEEEEESTTTTTCGG
T ss_pred             CCCEEEEEeCCCCCCC-CCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCCHHHcCCCCEEEEEechhhcCCcc
Confidence            3466555544455666 45588999999999999999999999999886655 33333222  22223447999999 69


Q ss_pred             cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHh---hch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceee
Q 011777          327 LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRV---IDK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDV  401 (477)
Q Consensus       327 ~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~---l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v  401 (477)
                      +|+||+++++++++.+......++++.+.+++.++.++|+.   ..+  ++..++++++.+++.+.|+++    +.....
T Consensus       241 ~RiG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~  316 (385)
T 1b5p_A          241 WRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL----GLKAVR  316 (385)
T ss_dssp             GCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TCCBCC
T ss_pred             cceEEEEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC----CCeecC
Confidence            99999999999988887655556778899999999888864   222  334556666666777766664    221112


Q ss_pred             eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC--CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          402 RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH--GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       402 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ...|.++++.+...       .....++.+.|.++||.+.++..+  .+++||+..  .+++++++++++|.+++++
T Consensus       317 ~~~~~~~~~~~~~~-------~~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~--~~~~~i~~~l~~l~~~l~~  384 (385)
T 1b5p_A          317 PSGAFYVLMDTSPI-------APDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA--TSEENLRKALERFARVLGR  384 (385)
T ss_dssp             CSBTTEEEEECTTT-------CSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHGGGGC--
T ss_pred             CCeeEEEEEecCCC-------CCCHHHHHHHHHHCCeEEecccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHhh
Confidence            22345566665210       012456888888999999987543  479999765  7899999999999887653

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.97  E-value=3.1e-28  Score=244.89  Aligned_cols=321  Identities=14%  Similarity=0.079  Sum_probs=223.0

Q ss_pred             CCCHHHHHHHHHHHhhcccccccc--CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc-----------
Q 011777          112 HCHPDVLNAIFEQSKLLQHATTIY--LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS-----------  178 (477)
Q Consensus       112 h~~p~v~~Av~~~l~~~~~~~~~~--~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~-----------  178 (477)
                      ..+|++.+++.+++.........+  ..+...+++++++++++.+.++++|++||++|++.+++.++..           
T Consensus        41 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~  120 (397)
T 3f9t_A           41 NVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSK  120 (397)
T ss_dssp             CCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccC
Confidence            468999999999887532211122  2455678999999999887789999999999999999988764           


Q ss_pred             cCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEec
Q 011777          179 TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAE  258 (477)
Q Consensus       179 ~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~e  258 (477)
                      ++++.|++.+++|+++.......+.           .+..++...  ...++      .++|+++++.   .++++|+++
T Consensus       121 ~~gd~vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~~--~~~~d------~~~l~~~i~~---~~~~~v~~~  178 (397)
T 3f9t_A          121 NEHPKIIVPITAHFSFEKGREMMDL-----------EYIYAPIKE--DYTID------EKFVKDAVED---YDVDGIIGI  178 (397)
T ss_dssp             CSSCEEEEETTCCTHHHHHHHHHTC-----------EEEEECBCT--TSSBC------HHHHHHHHHH---SCCCEEEEE
T ss_pred             CCCeEEEECCcchhHHHHHHHHcCc-----------eeEEEeeCC--CCcCC------HHHHHHHHhh---cCCeEEEEE
Confidence            2467899999998886544333211           122222211  11112      5888888872   156777777


Q ss_pred             ccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccC--CCC--------CCccccccCCCcceeeecccccCccc
Q 011777          259 TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGR--TGS--------HYWGFETQGVIPDIVTMAKGIGNGLP  328 (477)
Q Consensus       259 pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr--~G~--------~~~~~~~~gv~pDivt~sK~lg~G~p  328 (477)
                      +.++++|.+.+    +++|.++|++||+++|+||+|+++..  ++.        ..+.++. ++.+.+.+++|.+++|++
T Consensus       179 ~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~  253 (397)
T 3f9t_A          179 AGTTELGTIDN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIP  253 (397)
T ss_dssp             BSCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSS
T ss_pred             CCCCCCCCCCC----HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCC
Confidence            77788887766    99999999999999999999987532  330        1333344 666666678899888899


Q ss_pred             eEEEEeCHH-HHHhhccc---cc--------ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCC
Q 011777          329 LGAVVTTPE-IANVMAQK---IQ--------FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHD  396 (477)
Q Consensus       329 ig~v~~~~~-~~~~~~~~---~~--------~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~  396 (477)
                      +|+++++++ +.+.+...   ..        +.+.+.+++++.++++.+.....++..++.+++.+++.+.|+++  ...
T Consensus       254 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~  331 (397)
T 3f9t_A          254 SGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN--NFK  331 (397)
T ss_dssp             CEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCC
T ss_pred             ceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC--CCE
Confidence            999988655 44443221   11        12223466777777766654333567778888888888888776  333


Q ss_pred             CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          397 IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       397 ~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      .+.  .+.+.++++.+.        .   ..++.+.|.++||++.++. ..+++||+++..++++++++++++|+++++
T Consensus       332 ~~~--~~~~~~~~~~~~--------~---~~~~~~~l~~~gi~v~~~~-~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~  396 (397)
T 3f9t_A          332 PVI--EPILNIVAIEDE--------D---YKEVCKKLRDRGIYVSVCN-CVKALRIVVMPHIKREHIDNFIEILNSIKR  396 (397)
T ss_dssp             BSS--CCSSSEEEEECT--------T---HHHHHHHHHHTTCBCEECS-SSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred             EEc--CCCccEEEEEeC--------C---HHHHHHHHHhCCeEEeccC-CCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence            222  244566666541        1   4578889999999998864 358999999999999999999999999875

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.97  E-value=1.8e-29  Score=255.50  Aligned_cols=335  Identities=13%  Similarity=0.070  Sum_probs=224.6

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccc--ccccC-ChHHHHHHHHHHhhC--C-CCCCEEEEeCChHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA--TTIYL-HHAIADFAEALASKM--P-GNLKVVYFVNSGTEAN  168 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~--~~~~~-~~~~~~l~~~La~~~--~-~~~~~v~~~~sGseA~  168 (477)
                      |+.+|||..+..  .++ .+|.+.+++.++++.....  ...|. .....++++.+++++  + .+.++|++++|+++|+
T Consensus        32 ~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al  108 (400)
T 3asa_A           32 QHTVINLSIGDT--TQP-LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDL  108 (400)
T ss_dssp             TSCCEECSSCCC--CCC-CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHH
T ss_pred             CCceEeccCCCC--CCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHH
Confidence            678999988764  343 6899999999998764321  12232 334678889999883  4 4567899999999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      +.++++.   .++++|++.+++|+++.......+. .         .+..++..  ....+.       .++++    . 
T Consensus       109 ~~~~~~~---~~gd~Vl~~~p~y~~~~~~~~~~g~-~---------~~~~~~~~--~~~~~~-------~~l~~----~-  161 (400)
T 3asa_A          109 FRLLSFF---GPNQTVAIQDPSYPAYLDIARLTGA-K---------EIIALPCL--QENAFF-------PEFPE----D-  161 (400)
T ss_dssp             HHHHHHH---CSSCEEEEEESCCHHHHHHHHHTTC-S---------EEEEEECC--GGGTTC-------CCCCT----T-
T ss_pred             HHHHHHc---CCCCEEEECCCCcHHHHHHHHHcCC-c---------ceEecccc--hhcCcc-------cChhh----c-
Confidence            9876543   4568899999999987654322211 0         01222211  011111       11111    1 


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccC----CCcceeeeccccc
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQG----VIPDIVTMAKGIG  324 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~g----v~pDivt~sK~lg  324 (477)
                       +++++|++++.++++|. .++.+++++|.++|++||+++|+||+|++|++.|.....+..++    ....+.++||.+|
T Consensus       162 -~~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g  239 (400)
T 3asa_A          162 -THIDILCLCSPNNPTGT-VLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLG  239 (400)
T ss_dssp             -CCCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGT
T ss_pred             -cCccEEEEeCCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcC
Confidence             35667777666777785 46889999999999999999999999999977662122222222    2234668999998


Q ss_pred             -CccceEEEEeCHHH-------HHhhcccccccCC-CCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhC
Q 011777          325 -NGLPLGAVVTTPEI-------ANVMAQKIQFNTF-GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERH  395 (477)
Q Consensus       325 -~G~pig~v~~~~~~-------~~~~~~~~~~~t~-~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~  395 (477)
                       +|+|+||+++++++       ++.+....+..++ +.|+++++++.++|+....++..++++++++++.+.|+++    
T Consensus       240 ~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----  315 (400)
T 3asa_A          240 FAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT----  315 (400)
T ss_dssp             TTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT----
T ss_pred             CcchheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC----
Confidence             79999999999887       5554332233445 5789999999999886534567788888888888887764    


Q ss_pred             CCceeeec-cceeEEEE-EeeCCCCCCccHHHHHHHHHHHHH-cCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHH
Q 011777          396 DIIGDVRG-RGLMVGME-LVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVD  468 (477)
Q Consensus       396 ~~~~~v~g-~g~~~~i~-~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~  468 (477)
                      +. ....+ .|++++++ +....        ...++.+.|++ +||++.++..+    .+++||+  +..++++++++++
T Consensus       316 g~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~i~~~l~  384 (400)
T 3asa_A          316 GF-EVFGGEHAPYLWVKPTQANI--------SDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFS--SLGKREDILAACE  384 (400)
T ss_dssp             TC-EEEECSSSSEEEEECCCTTC--------CTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEE--CCSCHHHHHHHHH
T ss_pred             CC-eeeCCCCceEEEEeccCCCC--------CHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEE--eeCCHHHHHHHHH
Confidence            32 22333 47788887 52110        11246666664 59999987432    4689997  5789999999999


Q ss_pred             HHHHHHhh
Q 011777          469 ALDYSMSK  476 (477)
Q Consensus       469 ~l~~~l~~  476 (477)
                      +|++++++
T Consensus       385 ~l~~~~~~  392 (400)
T 3asa_A          385 RLQMAPAL  392 (400)
T ss_dssp             HHHC----
T ss_pred             HHHHHHHh
Confidence            99988764

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.97  E-value=2.2e-28  Score=247.00  Aligned_cols=323  Identities=15%  Similarity=0.072  Sum_probs=221.6

Q ss_pred             CCCCHHHHHHHHHHHhhcc---cccc----ccCChHHHHHHHHHHhhCCC-CCCEEEEeCChHHHHHHHHHHHHh--ccC
Q 011777          111 GHCHPDVLNAIFEQSKLLQ---HATT----IYLHHAIADFAEALASKMPG-NLKVVYFVNSGTEANELAMLMARL--STG  180 (477)
Q Consensus       111 Gh~~p~v~~Av~~~l~~~~---~~~~----~~~~~~~~~l~~~La~~~~~-~~~~v~~~~sGseA~~~Al~~ar~--~~~  180 (477)
                      |+.+|++.+++.+++++..   +...    ....+...+++++|+++++. +.+.|+|++||++|++.+++.++.  ..+
T Consensus        33 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~  112 (406)
T 1kmj_A           33 AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRA  112 (406)
T ss_dssp             CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCT
T ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcCCC
Confidence            4689999999999998642   1110    01245578999999999987 567899999999999999998742  346


Q ss_pred             CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEeccc
Q 011777          181 NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETI  260 (477)
Q Consensus       181 ~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi  260 (477)
                      +++|++.+++||+.............       ..+..++...  ....  |    +++|+++++    +++++|+++++
T Consensus       113 gd~vl~~~~~~~~~~~~~~~~~~~~g-------~~~~~~~~~~--~~~~--d----~~~l~~~l~----~~~~~v~~~~~  173 (406)
T 1kmj_A          113 GDNIIISQMEHHANIVPWQMLCARVG-------AELRVIPLNP--DGTL--Q----LETLPTLFD----EKTRLLAITHV  173 (406)
T ss_dssp             TCEEEEETTCCGGGTHHHHHHHHHHT-------CEEEEECBCT--TSCB--C----GGGHHHHCC----TTEEEEEEESB
T ss_pred             CCEEEEecccchHHHHHHHHHHHhCC-------CEEEEEecCC--CCCc--C----HHHHHHHhc----cCCeEEEEeCC
Confidence            78899999999987543221110000       0112222111  1111  1    367887775    46899999999


Q ss_pred             CCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccCccceEEEEeCHHH
Q 011777          261 QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGNGLPLGAVVTTPEI  338 (477)
Q Consensus       261 ~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G~pig~v~~~~~~  338 (477)
                      ++++|.+.+    +++|.++|++||+++|+||+|+. |..   .+....  ..+|++  +++|.+|. ..+|++++++++
T Consensus       174 ~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~-g~~---~~~~~~--~~~d~~~~s~~K~~g~-~G~G~~~~~~~~  242 (406)
T 1kmj_A          174 SNVLGTENP----LAEMITLAHQHGAKVLVDGAQAV-MHH---PVDVQA--LDCDFYVFSGHKLYGP-TGIGILYVKEAL  242 (406)
T ss_dssp             CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTT-TTS---CCCHHH--HTCSEEEEEGGGTTSC-TTCEEEEECHHH
T ss_pred             CccccCcCC----HHHHHHHHHHcCCEEEEEchhhc-CCC---CCcccc--cCCCEEEEEchhccCC-CCcEEEEEeHHH
Confidence            999998776    99999999999999999999973 322   122222  246765  58999953 238999999999


Q ss_pred             HHhhccccccc---------------------CCCCcHHHHHHHH-HHHHhhch---hhHHHHHHHHHHHHHHHHHHHHH
Q 011777          339 ANVMAQKIQFN---------------------TFGGNPVCSAGGL-AVLRVIDK---ERRQAHCADVGSHLLGRLRTLQE  393 (477)
Q Consensus       339 ~~~~~~~~~~~---------------------t~~~~~~~~aaa~-a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~  393 (477)
                      ++.+.....++                     +.+.+++.+++++ ++++.+.+   +++.++++++.+++.+.|+++  
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--  320 (406)
T 1kmj_A          243 LQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESV--  320 (406)
T ss_dssp             HHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS--
T ss_pred             HhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcC--
Confidence            98876543221                     1334556666555 77877654   345666666677776666543  


Q ss_pred             hCCCceeeec--cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--------C--CCEEEEeCCCCCcHH
Q 011777          394 RHDIIGDVRG--RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--------H--GNVFRIKPPMCFTKD  461 (477)
Q Consensus       394 ~~~~~~~v~g--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--------~--~~~iRi~p~~~~t~e  461 (477)
                        +.+.....  .|.++.+.+. .     .   ...++.+.|.++||.+.++..        +  .+++||+++..+|++
T Consensus       321 --~~~~~~~~~~~~~~~~~~~~-~-----~---~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~  389 (406)
T 1kmj_A          321 --PDLTLYGPQNRLGVIAFNLG-K-----H---HAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHE  389 (406)
T ss_dssp             --TTEEEESCTTCCSEEEEEET-T-----C---CHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHH
T ss_pred             --CCeEEecCCCcCCEEEEEEC-C-----C---CHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHH
Confidence              32333333  6778777752 1     0   134677889999999987641        1  479999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 011777          462 DADFLVDALDYSMSK  476 (477)
Q Consensus       462 ~i~~~l~~l~~~l~~  476 (477)
                      |+++++++|+++++.
T Consensus       390 ~i~~~~~~l~~~~~~  404 (406)
T 1kmj_A          390 EVDRLVTGLQRIHRL  404 (406)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998764

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.97  E-value=1e-29  Score=256.43  Aligned_cols=340  Identities=15%  Similarity=0.126  Sum_probs=222.6

Q ss_pred             CCCEEEeecCCcccccCC--CCCHHHHHHHHHHHhhccccccccC-ChHHHHHHHHHHhhC-CC--CCCEEEE--eCChH
Q 011777           94 NGRRYLDAFAGIVTVSCG--HCHPDVLNAIFEQSKLLQHATTIYL-HHAIADFAEALASKM-PG--NLKVVYF--VNSGT  165 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lG--h~~p~v~~Av~~~l~~~~~~~~~~~-~~~~~~l~~~La~~~-~~--~~~~v~~--~~sGs  165 (477)
                      .|+.++||..|.+..+.|  +.+|+|.+++.++++...  ...|. .....++++.+++++ ..  +.++|+|  ++||+
T Consensus        24 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~  101 (394)
T 2ay1_A           24 PRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETET--TKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGT  101 (394)
T ss_dssp             CCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCC--CCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHH
T ss_pred             CCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcc--cCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCch
Confidence            356789999988765556  678999999999876521  11222 222455666666554 22  4578999  99999


Q ss_pred             HHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHh
Q 011777          166 EANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHID  245 (477)
Q Consensus       166 eA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~  245 (477)
                      +|++.++++++.+.++++|++..++||++.......+.           .+..++..  ....+..|    .+++++.++
T Consensus       102 ~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~-----------~~~~~~~~--~~~~~~~d----~~~l~~~l~  164 (394)
T 2ay1_A          102 GALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGL-----------PVQTYRYF--DAETRGVD----FEGMKADLA  164 (394)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTC-----------CEEEEECE--ETTTTEEC----HHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCC-----------ceEEEecc--cccCCccC----HHHHHHHHH
Confidence            99999999876555678899999999998665544322           11222211  00011111    578888886


Q ss_pred             ccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC-CCcccccc-CCCcc---eeeec
Q 011777          246 FGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS-HYWGFETQ-GVIPD---IVTMA  320 (477)
Q Consensus       246 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~-~~~~~~~~-gv~pD---ivt~s  320 (477)
                      .. +..+++++++..++++|. .++.+++++|.++|++||+++|+||+|++|+++|. ..+.+..+ ...++   +.++|
T Consensus       165 ~~-~~~~~~~~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  242 (394)
T 2ay1_A          165 AA-KKGDMVLLHGCCHNPTGA-NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCS  242 (394)
T ss_dssp             TC-CTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECT
T ss_pred             hC-CCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEecc
Confidence            32 224567776777777774 56889999999999999999999999999977530 11222211 11233   34789


Q ss_pred             cccc-CccceEEEEe---CHHHHHhhccc---ccccCCC-CcHHHHHHHHHHHHhhc--------hhhHHHHHHHHHHHH
Q 011777          321 KGIG-NGLPLGAVVT---TPEIANVMAQK---IQFNTFG-GNPVCSAGGLAVLRVID--------KERRQAHCADVGSHL  384 (477)
Q Consensus       321 K~lg-~G~pig~v~~---~~~~~~~~~~~---~~~~t~~-~~~~~~aaa~a~l~~l~--------~~~~~~~~~~~~~~l  384 (477)
                      |.++ +|+|+||+++   ++++++.+...   .+..+++ .|+++++++.++|+...        .++..++++++.+++
T Consensus       243 K~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l  322 (394)
T 2ay1_A          243 KNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQL  322 (394)
T ss_dssp             TTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999 7999999998   67654433211   1123443 48899999999887541        134556666666777


Q ss_pred             HHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHH
Q 011777          385 LGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDAD  464 (477)
Q Consensus       385 ~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~  464 (477)
                      .+.|+++....+.....+..|+++++++        +    ...+.+.+.++||++.++      +||+++ .+++++++
T Consensus       323 ~~~L~~~~~~~~~~~~~~~~g~~~~~~~--------~----~~~~~~~l~~~gi~v~~~------~Ris~~-~~~~~~i~  383 (394)
T 2ay1_A          323 AGELRDLSGSDRFGFVAEHRGMFSRLGA--------T----PEQVKRIKEEFGIYMVGD------SRINIA-GLNDNTIP  383 (394)
T ss_dssp             HHHHHHHHTSSTTTHHHHCCSSEEECCC--------C----HHHHHHHHHHHCEECCTT------CEEEGG-GCCTTTHH
T ss_pred             HHHHHhcCCCCCeeEEcCCceEEEeeCC--------C----HHHHHHHHHhCCEEecCC------CeEEee-cCCHhhHH
Confidence            7776665311011111223367766644        1    135667777899999864      599877 47999999


Q ss_pred             HHHHHHHHH
Q 011777          465 FLVDALDYS  473 (477)
Q Consensus       465 ~~l~~l~~~  473 (477)
                      +++++|+++
T Consensus       384 ~~~~~l~~~  392 (394)
T 2ay1_A          384 ILARAIIEV  392 (394)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            999999875

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.97  E-value=8.5e-29  Score=251.59  Aligned_cols=346  Identities=11%  Similarity=0.049  Sum_probs=219.2

Q ss_pred             CEEEeecCCcccc-cCCCCCHHHHHHHHHHHhhccccccccCC-hHHHHHHHHHHhhCC------------CCCCEEEEe
Q 011777           96 RRYLDAFAGIVTV-SCGHCHPDVLNAIFEQSKLLQHATTIYLH-HAIADFAEALASKMP------------GNLKVVYFV  161 (477)
Q Consensus        96 ~~ylD~~~g~~~~-~lGh~~p~v~~Av~~~l~~~~~~~~~~~~-~~~~~l~~~La~~~~------------~~~~~v~~~  161 (477)
                      +.+|||..|.+.. +-.+.+|++.+++.++++....  ..|.. ....++++.+++++.            .+.++|+++
T Consensus        33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~--~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~  110 (416)
T 1bw0_A           33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQEC--NGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLC  110 (416)
T ss_dssp             SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCS--SSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEE
T ss_pred             CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCcc--CCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEe
Confidence            5689998887542 1235789999999999875321  11221 123344444444433            346789999


Q ss_pred             CChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHH
Q 011777          162 NSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQ  241 (477)
Q Consensus       162 ~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le  241 (477)
                      +||++|++.+++.+.  .+++.|++.+++||++.......+             ...+.++......+..|    +++|+
T Consensus       111 ~g~~~al~~~~~~l~--~~gd~vl~~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~d----~~~l~  171 (416)
T 1bw0_A          111 SGGSHGILMAITAIC--DAGDYALVPQPGFPHYETVCKAYG-------------IGMHFYNCRPENDWEAD----LDEIR  171 (416)
T ss_dssp             SHHHHHHHHHHHHHC--CTTCEEEEEESCCTHHHHHHHHTT-------------CEEEEEEEEGGGTTEEC----HHHHH
T ss_pred             CChHHHHHHHHHHhC--CCCCEEEEcCCCcHhHHHHHHHcC-------------cEEEEeecCcccCCCCC----HHHHH
Confidence            999999999999763  356789999999998765433221             11111111100011111    47788


Q ss_pred             HHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC----CCccccccCCC---c
Q 011777          242 DHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS----HYWGFETQGVI---P  314 (477)
Q Consensus       242 ~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~----~~~~~~~~gv~---p  314 (477)
                      +.++   ++..++++++| ++++|. .++++++++|.++|++||++||+||+|++|.++|.    .+..+...+..   .
T Consensus       172 ~~l~---~~~~~v~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i  246 (416)
T 1bw0_A          172 RLKD---DKTKLLIVTNP-SNPCGS-NFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRV  246 (416)
T ss_dssp             HHCC---TTEEEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEE
T ss_pred             HHhc---cCCeEEEEeCC-CCCCCc-ccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEE
Confidence            7775   22234455555 566775 56889999999999999999999999999877662    12222222222   2


Q ss_pred             ceeeeccccc-CccceEEEEeCHH--HHHhhcc---cccccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHH
Q 011777          315 DIVTMAKGIG-NGLPLGAVVTTPE--IANVMAQ---KIQFNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLL  385 (477)
Q Consensus       315 Divt~sK~lg-~G~pig~v~~~~~--~~~~~~~---~~~~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~  385 (477)
                      .+.++||.++ +|+|+||++++++  +++.+..   .....+++.|+++++++.++|+.+.+   ++..++++++.+++.
T Consensus       247 ~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~  326 (416)
T 1bw0_A          247 ILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLY  326 (416)
T ss_dssp             EEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            2347899987 5899999998763  4333321   11224678899999999999985432   233444555555555


Q ss_pred             HHHHHHHHhCCCceeeec-cceeEEEEEeeCCCCCCccHHHHHHHHHHH-HHcCceeeccCCC--CCEEEEeCCCCCcHH
Q 011777          386 GRLRTLQERHDIIGDVRG-RGLMVGMELVTDRKEKTPAKAETAVLFEKL-RELGVLVGKGGLH--GNVFRIKPPMCFTKD  461 (477)
Q Consensus       386 ~~L~~l~~~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~--~~~iRi~p~~~~t~e  461 (477)
                      +.|+    +++.+..+.+ .|+++++.+.....   +.......+.+.| .++||++.++..+  .+++||++.  .+++
T Consensus       327 ~~L~----~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~--~~~e  397 (416)
T 1bw0_A          327 NHIG----ECIGLAPTMPRGAMYLMSRIDLEKY---RDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTT--RPVE  397 (416)
T ss_dssp             HHHT----TSTTEEECCCCBTTEEEEEECGGGB---SSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHH
T ss_pred             HHHH----hCCCCcccCCCeeEEEEEeCCHHHc---CCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEec--CCHH
Confidence            5443    3433433333 47777877732100   0001134677777 4889999987543  478999874  7899


Q ss_pred             HHHHHHHHHHHHHhh
Q 011777          462 DADFLVDALDYSMSK  476 (477)
Q Consensus       462 ~i~~~l~~l~~~l~~  476 (477)
                      ++++++++|.+++++
T Consensus       398 ~l~~~l~~l~~~l~~  412 (416)
T 1bw0_A          398 VYREAVERIKAFCQR  412 (416)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998864

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.96  E-value=2.1e-28  Score=249.74  Aligned_cols=312  Identities=13%  Similarity=0.079  Sum_probs=212.3

Q ss_pred             ccCChHHHHHHHHHHhhCCCCC---------CEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccC
Q 011777          134 IYLHHAIADFAEALASKMPGNL---------KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTAL  204 (477)
Q Consensus       134 ~~~~~~~~~l~~~La~~~~~~~---------~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~  204 (477)
                      .+..+.+..+++.+.+..+...         ++|++|+|+++|++.+++....  +++.|++.+++|+++.......+  
T Consensus        78 ~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g--  153 (425)
T 2r2n_A           78 AGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIIN--PGDNVLLDEPAYSGTLQSLHPLG--  153 (425)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCC--TTCEEEEESSCCHHHHHHHGGGT--
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCC--CCCEEEEeCCCcHHHHHHHHHcC--
Confidence            3444566777777766554332         5899999999999999997632  56889999999998765543322  


Q ss_pred             CCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC--------CCCeeEEEecc-cCCCCCeeeCCchhHH
Q 011777          205 NTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT--------SGKVAGFIAET-IQGVGGAVELAPGYLK  275 (477)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~--------~~~~a~vi~ep-i~~~~G~~~~~~~~l~  275 (477)
                                 ...+.+|... ..++      .++|+++++...        ..++++|+++| .+|++|. .++.++++
T Consensus       154 -----------~~~~~v~~~~-~~~d------~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~-~~~~~~l~  214 (425)
T 2r2n_A          154 -----------CNIINVASDE-SGIV------PDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGN-SLTSERKK  214 (425)
T ss_dssp             -----------CEEEEECEET-TEEC------HHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCC-CCCHHHHH
T ss_pred             -----------CEEEEeCcCC-CCCC------HHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCC-cCCHHHHH
Confidence                       1222222110 0111      578888886321        13577887765 5677774 56889999


Q ss_pred             HHHHHHHHhCcEEEEcCcccCccCCCCC---CccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCC
Q 011777          276 LVYDIVRKAGGVCIADEVQTGFGRTGSH---YWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFG  352 (477)
Q Consensus       276 ~l~~l~~~~gillI~DEv~~gfgr~G~~---~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~  352 (477)
                      +|.++|++||++||+||+|++|.+.|..   +..++..+....+.+|||.++.|+|+||+++++++++.+.......+++
T Consensus       215 ~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~~l~~~~~~~~~~  294 (425)
T 2r2n_A          215 EIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIERVILHIQVSTLH  294 (425)
T ss_dssp             HHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHHHHHHHHHTTTCS
T ss_pred             HHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999988776622   2233333444566789999998999999999999998887666667788


Q ss_pred             CcHHHHHHHHHHHHhhchh---hHHHHHHHHHHHHHHHHHHHHHh-CCCc-e-eeeccceeEEEEEeeCCCCCCccHHHH
Q 011777          353 GNPVCSAGGLAVLRVIDKE---RRQAHCADVGSHLLGRLRTLQER-HDII-G-DVRGRGLMVGMELVTDRKEKTPAKAET  426 (477)
Q Consensus       353 ~~~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~-~~~~-~-~v~g~g~~~~i~~~~~~~~~~~~~~~~  426 (477)
                      .|+++++++.++|+.+.++   ++.+++++..+..++.|.+...+ .+.+ . ..+..|+++++++....     +.  .
T Consensus       295 ~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~-----~~--~  367 (425)
T 2r2n_A          295 PSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGIN-----DV--K  367 (425)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCS-----CC--H
T ss_pred             CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCC-----CH--H
Confidence            9999999999999864322   22222333223333333333323 2322 2 22456788888884211     10  1


Q ss_pred             HHHHHHHHHcCceeeccCCC-------CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          427 AVLFEKLRELGVLVGKGGLH-------GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       427 ~~~~~~l~~~Gv~v~~~~~~-------~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ..+.+.|.++||.+.++..+       .+++||+++. .+++++++++++|.+++++
T Consensus       368 ~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~  423 (425)
T 2r2n_A          368 ELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKE  423 (425)
T ss_dssp             HHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHH
Confidence            23577888999999987432       3789998763 6999999999999998864

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.96  E-value=3e-29  Score=255.62  Aligned_cols=345  Identities=12%  Similarity=0.035  Sum_probs=231.3

Q ss_pred             EEeecCCcccccCCCCCHHHHHHHH--HHHhhcccccccc-C-ChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHH--HH
Q 011777           98 YLDAFAGIVTVSCGHCHPDVLNAIF--EQSKLLQHATTIY-L-HHAIADFAEALASKMPGNLKVVYFVNSGTEANE--LA  171 (477)
Q Consensus        98 ylD~~~g~~~~~lGh~~p~v~~Av~--~~l~~~~~~~~~~-~-~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~--~A  171 (477)
                      .+||..|.+...+...+|++.+++.  +.++. ......| . .....+|++.|+++++.+.++|++|+|+++|+.  .+
T Consensus        27 ~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~  105 (423)
T 3ez1_A           27 NLNMQRGQPADADFDLSNGLLTVLGAEDVRMD-GLDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVL  105 (423)
T ss_dssp             CEESCCCCCCHHHHHTTGGGGGSCCGGGCEET-TEETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHH
T ss_pred             eEecCCCCCChHhCCCcHHHHHHHhhhHHhhc-chhhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHH
Confidence            4777776654333345567777775  33321 1111234 2 334678999999999877789999999999997  77


Q ss_pred             HHHHHhc-cC--------CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHH
Q 011777          172 MLMARLS-TG--------NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQD  242 (477)
Q Consensus       172 l~~ar~~-~~--------~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~  242 (477)
                      ++..... .|        ++.|++.+++|+++.......+.             ..+.+|.... .++      +++|++
T Consensus       106 ~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~-g~d------~~~l~~  165 (423)
T 3ez1_A          106 TFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGF-------------ELLTVDMQSD-GPD------VDAVER  165 (423)
T ss_dssp             HHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTC-------------EEEEEEEETT-EEC------HHHHHH
T ss_pred             HHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCC-------------EEEeccCCCC-CCC------HHHHHH
Confidence            7765432 33        58899999999987665444321             1111111100 111      578888


Q ss_pred             HHhccCCCCeeEEEecc-cCCCCCeeeCCchhHHHHHHHH-HHhCcEEEEcCcccCccCCC---C---CCccc----ccc
Q 011777          243 HIDFGTSGKVAGFIAET-IQGVGGAVELAPGYLKLVYDIV-RKAGGVCIADEVQTGFGRTG---S---HYWGF----ETQ  310 (477)
Q Consensus       243 ~i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~-~~~gillI~DEv~~gfgr~G---~---~~~~~----~~~  310 (477)
                      +++.  ..++++|+++| .+|++| ..++.+.+++|.++| ++||+++|+||+|+.+.+.+   .   .++.+    +..
T Consensus       166 ~l~~--~~~~~~v~~~~~~~NPtG-~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (423)
T 3ez1_A          166 LAGT--DPSVKGILFVPTYSNPGG-ETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYP  242 (423)
T ss_dssp             HHHS--CTTEEEEEECSSSCTTTC-CCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCT
T ss_pred             HHhh--CCCceEEEECCCCCCCCC-cCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCC
Confidence            8852  24688888886 566677 455778899999999 99999999999999543222   0   11111    133


Q ss_pred             CCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHh-hc-hhh----HHHHHHHHHHHH
Q 011777          311 GVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRV-ID-KER----RQAHCADVGSHL  384 (477)
Q Consensus       311 gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~-l~-~~~----~~~~~~~~~~~l  384 (477)
                      +....+.+|||.+.+|+|+||+++++++++.+....+..+++.+++++.++.++++. .. -++    ..+.++++.+.+
T Consensus       243 ~~~i~~~S~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  322 (423)
T 3ez1_A          243 DRAFVFASTSKITFAGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAV  322 (423)
T ss_dssp             TSEEEEEESTTTSCSSSSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCchhhccCCcceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            445557789999777999999999999999888766677889999999999988875 11 112    223333344444


Q ss_pred             HHHHHHHHHhCC-Cce-eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-C-------CCCEEEEeC
Q 011777          385 LGRLRTLQERHD-IIG-DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-L-------HGNVFRIKP  454 (477)
Q Consensus       385 ~~~L~~l~~~~~-~~~-~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~-------~~~~iRi~p  454 (477)
                      .+.|.+.....+ .+. ..+..|+++++++...         ....+.+.|.++||++.+++ .       ..+++||++
T Consensus       323 ~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~---------~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~  393 (423)
T 3ez1_A          323 DEVLRAELGEGGEYATWTLPKGGYFISLDTAEP---------VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAP  393 (423)
T ss_dssp             HHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS---------CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECC
T ss_pred             HHHHHHhcCcCCCceEEeCCCccEEEEEECCCC---------cHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEc
Confidence            454544332333 122 2334578888888421         14567888999999999832 1       247999998


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhh
Q 011777          455 PMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       455 ~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +.. ++++|++++++|.+++++
T Consensus       394 ~~~-~~~~i~~~~~~l~~~l~~  414 (423)
T 3ez1_A          394 TRP-PVEEVRTAMQVVAACIRL  414 (423)
T ss_dssp             SSS-CHHHHHHHHHHHHHHHHH
T ss_pred             CCC-CHHHHHHHHHHHHHHHHH
Confidence            655 999999999999998864

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.96  E-value=3.8e-29  Score=249.84  Aligned_cols=331  Identities=13%  Similarity=0.117  Sum_probs=230.2

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-------ccccccCChHHHHHHHH-HHhhCCCCCCEEEEeCChHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-------HATTIYLHHAIADFAEA-LASKMPGNLKVVYFVNSGTE  166 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-------~~~~~~~~~~~~~l~~~-La~~~~~~~~~v~~~~sGse  166 (477)
                      +-.|||+.+     +.++.+|++.+++.+++....       +....+..+...+++++ ++++++.+  .++|++||++
T Consensus         8 ~~i~ld~~~-----~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~--~v~~~~g~t~   80 (371)
T 2e7j_A            8 DFINIDPLQ-----TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGARE   80 (371)
T ss_dssp             CCEECCHHH-----HTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS--EEEEESSHHH
T ss_pred             CcEEecccc-----cCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC--EEEEeCChHH
Confidence            345777632     245689999999999887542       11222345678899999 99999765  8999999999


Q ss_pred             HHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCC--CCcCCCCCCCHHHHHHHHHHHH
Q 011777          167 ANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNP--DPYHGSFGSDAARYAQDLQDHI  244 (477)
Q Consensus       167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~le~~i  244 (477)
                      |++.+++.+.  .+++.|++.+++||+........             |...+.++  ......+  |    +++|++.+
T Consensus        81 a~~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~--d----~~~l~~~l  139 (371)
T 2e7j_A           81 AKFAVMHSLA--KKDAWVVMDENCHYSSYVAAERA-------------GLNIALVPKTDYPDYAI--T----PENFAQTI  139 (371)
T ss_dssp             HHHHHHHHHC--CTTCEEEEETTCCHHHHHHHHHT-------------TCEEEEECCCCTTTCCC--C----HHHHHHHH
T ss_pred             HHHHHHHHHh--CCCCEEEEccCcchHHHHHHHHc-------------CCeEEEeecccCCCCCc--C----HHHHHHHH
Confidence            9999999873  36788999999999876653222             22222222  1111112  2    57888888


Q ss_pred             hccCC-CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eecc
Q 011777          245 DFGTS-GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAK  321 (477)
Q Consensus       245 ~~~~~-~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK  321 (477)
                      +.... +++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+++ ..+   +....++  +|++  +++|
T Consensus       140 ~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~li~D~a~~~~-~~~---~~~~~~~--~di~~~s~sK  209 (371)
T 2e7j_A          140 EETKKRGEVVLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYAIG-RMP---VSLKEIG--ADFIVGSGHK  209 (371)
T ss_dssp             HHHTTTSCEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTTBT-TBC---CCHHHHT--CSEEEEEHHH
T ss_pred             HhhcccCCeEEEEEECCCCCCcccCC----HHHHHHHHHHcCCeEEEECccccC-CCC---CChhhcC--CCEEEecCCc
Confidence            63211 46889999999999998776    799999999999999999999853 222   2223333  4555  5789


Q ss_pred             cccCccceEEEEeCHHHHHh-hccccc--cc-----CCCCcHHHHHHHHHHHHhhchhhHHHHH--HHHHHHHHHHHHHH
Q 011777          322 GIGNGLPLGAVVTTPEIANV-MAQKIQ--FN-----TFGGNPVCSAGGLAVLRVIDKERRQAHC--ADVGSHLLGRLRTL  391 (477)
Q Consensus       322 ~lg~G~pig~v~~~~~~~~~-~~~~~~--~~-----t~~~~~~~~aaa~a~l~~l~~~~~~~~~--~~~~~~l~~~L~~l  391 (477)
                      ++++|.++|++++++++++. +.....  ..     +++.|+..++++.++++.+.+ ++.+++  +++.+++.+.|+++
T Consensus       210 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~~  288 (371)
T 2e7j_A          210 SMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE-RIKRWDEEVEKARRFAAEMEKL  288 (371)
T ss_dssp             HSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGGHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc
Confidence            99988899999999998877 665433  22     456678888888888887655 566777  78888888888775


Q ss_pred             HHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeecc-------CCCCCEEE-EeCCCC-CcHHH
Q 011777          392 QERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG-------GLHGNVFR-IKPPMC-FTKDD  462 (477)
Q Consensus       392 ~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-------~~~~~~iR-i~p~~~-~t~e~  462 (477)
                        .........+.|.++++++.           ...++.+.|.++||.+.+.       +...+++| |+++.. +++++
T Consensus       289 --~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~  355 (371)
T 2e7j_A          289 --GIKQLGDNPHNHDLMFFHAE-----------VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEE  355 (371)
T ss_dssp             --TCEEESSSSCCSSEEEEECH-----------HHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHH
T ss_pred             --CcEEecCCCccCceEEEECC-----------CHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCHHH
Confidence              22211111114677787762           2457888888999998761       11257899 998877 89999


Q ss_pred             HHHHHHHHHHHHhhC
Q 011777          463 ADFLVDALDYSMSKL  477 (477)
Q Consensus       463 i~~~l~~l~~~l~~l  477 (477)
                      +++++++|+++++++
T Consensus       356 i~~~~~~l~~~~~~~  370 (371)
T 2e7j_A          356 VDYVLNAFKEIIEKY  370 (371)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999998753

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.96  E-value=3.9e-28  Score=244.66  Aligned_cols=328  Identities=16%  Similarity=0.117  Sum_probs=227.9

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCC-EEEEeCChHHHHHHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLK-VVYFVNSGTEANELAM  172 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~-~v~~~~sGseA~~~Al  172 (477)
                      +++.|+|..+.      ++.+|+|.+++.+++..  +.. ....+...+++++++++++.+.+ +++|++||++|++.++
T Consensus        32 ~~~~~l~~~~~------~~~~~~v~~a~~~~~~~--~~~-~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~  102 (393)
T 1vjo_A           32 VPSRLLLGPGP------SNAHPSVLQAMNVSPVG--HLD-PAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATI  102 (393)
T ss_dssp             CCCCEECSSSC------CCCCHHHHHHHSSCCCC--TTS-HHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHH
T ss_pred             CccceeccCCC------CCCCHHHHHHHhccccc--ccC-HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHH
Confidence            44678885432      36789999999876543  111 11235678999999999877667 8999999999999999


Q ss_pred             HHHHhccCCceEEEEccCccC--CcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCC
Q 011777          173 LMARLSTGNLGMIALRNAYHG--GSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG  250 (477)
Q Consensus       173 ~~ar~~~~~~~ii~~~~~yhG--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~  250 (477)
                      +.+.  .++++|++.+++||+  +....... +.          .+..++.+.  ....  |    .++|++.++..   
T Consensus       103 ~~~~--~~gd~Vl~~~~~~~~~~~~~~~~~~-g~----------~~~~v~~~~--~~~~--d----~~~l~~~l~~~---  158 (393)
T 1vjo_A          103 ANAV--EPGDVVLIGVAGYFGNRLVDMAGRY-GA----------DVRTISKPW--GEVF--S----LEELRTALETH---  158 (393)
T ss_dssp             HHHC--CTTCEEEEEESSHHHHHHHHHHHHT-TC----------EEEEEECCT--TCCC--C----HHHHHHHHHHH---
T ss_pred             Hhcc--CCCCEEEEEcCChhHHHHHHHHHHc-CC----------ceEEEecCC--CCCC--C----HHHHHHHHhhC---
Confidence            9773  366789999999998  33222111 10          122222211  1111  2    57888888621   


Q ss_pred             CeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeee--cccccCccc
Q 011777          251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTM--AKGIGNGLP  328 (477)
Q Consensus       251 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~p  328 (477)
                      ++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ ||...   +  +.....+|++++  +|+++++.+
T Consensus       159 ~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~---~--~~~~~~~di~~~s~sK~l~~~~~  228 (393)
T 1vjo_A          159 RPAILALVHAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGVP---I--FLDAWGVDLAYSCSQKGLGCSPG  228 (393)
T ss_dssp             CCSEEEEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTSC---C--CTTTTTCSEEECCSSSTTCSCSS
T ss_pred             CceEEEEeccCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-ccCcC---C--cccccCccEEEEcCcccccCCCc
Confidence            5678888888888997765    7899999999999999999998 65432   2  223345787765  599997669


Q ss_pred             eEEEEeCHHHHHhhccc-------cc------------ccCC-CCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHH
Q 011777          329 LGAVVTTPEIANVMAQK-------IQ------------FNTF-GGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLL  385 (477)
Q Consensus       329 ig~v~~~~~~~~~~~~~-------~~------------~~t~-~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~  385 (477)
                      +|++++++++++.+...       .+            ..++ +.|+++++++.++|+.+.+   ++..++++++.+++.
T Consensus       229 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~  308 (393)
T 1vjo_A          229 ASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLW  308 (393)
T ss_dssp             CEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            99999999998877321       00            2234 6789999999999987644   356778888888888


Q ss_pred             HHHHHHHHhCCCceeeec--cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccCC--CCCEEEEeC-CCCCc
Q 011777          386 GRLRTLQERHDIIGDVRG--RGLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGGL--HGNVFRIKP-PMCFT  459 (477)
Q Consensus       386 ~~L~~l~~~~~~~~~v~g--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--~~~~iRi~p-~~~~t  459 (477)
                      +.|+++  ...... ..+  .+.++++.+..        .....++.+.|.++ ||.+.++..  ..+++||++ ++..+
T Consensus       309 ~~L~~~--g~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~  377 (393)
T 1vjo_A          309 ERLEDI--GLSLHV-EKEYRLPTLTTVCIPD--------GVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSR  377 (393)
T ss_dssp             HHHHHT--TCCBSS-CGGGBCSSEEEEECCT--------TCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCS
T ss_pred             HHHHHc--CCcccC-CccccCCcEEEEEcCC--------CCCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCCh
Confidence            888775  233221 112  23455565421        11245688889888 999988743  257999994 56678


Q ss_pred             HHHHHHHHHHHHHHHh
Q 011777          460 KDDADFLVDALDYSMS  475 (477)
Q Consensus       460 ~e~i~~~l~~l~~~l~  475 (477)
                      ++++++++++|+++++
T Consensus       378 ~~~i~~~~~~l~~~l~  393 (393)
T 1vjo_A          378 KESVDQLIPALEQVLR  393 (393)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            8899999999998863

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.96  E-value=8.9e-28  Score=241.08  Aligned_cols=329  Identities=15%  Similarity=0.100  Sum_probs=229.8

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCC-CCEEEEeCChHHHHHHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGN-LKVVYFVNSGTEANELAMLM  174 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~-~~~v~~~~sGseA~~~Al~~  174 (477)
                      +.|+|+.+      .++.+|++.+++.+++..  +... ...+...+++++++++++.+ .+.+++++||++|++.+++.
T Consensus        20 ~~~l~~~~------~~~~~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~   90 (386)
T 2dr1_A           20 KYKLFTAG------PVACFPEVLEIMKVQMFS--HRSK-EYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRN   90 (386)
T ss_dssp             CSEECCSS------SCCCCHHHHHHTTSCCCC--TTSH-HHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHH
T ss_pred             cceeecCC------CcCCcHHHHHHHhccccc--ccCH-HHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHH
Confidence            46888643      246789999998776542  1111 12466789999999988765 56799999999999999997


Q ss_pred             HHhccCCceEEEEccCccCC--cccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCe
Q 011777          175 ARLSTGNLGMIALRNAYHGG--SSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKV  252 (477)
Q Consensus       175 ar~~~~~~~ii~~~~~yhG~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~  252 (477)
                      +.  .++++|++.+++||+.  ....... +.          .+..++...  ....  |    .++|++.++.  .+++
T Consensus        91 l~--~~gd~vl~~~~~~~~~~~~~~~~~~-g~----------~~~~v~~~~--~~~~--d----~~~l~~~l~~--~~~~  147 (386)
T 2dr1_A           91 GV--SKGGKVLVTIIGAFGKRYKEVVESN-GR----------KAVVLEYEP--GKAV--K----PEDLDDALRK--NPDV  147 (386)
T ss_dssp             HS--CTTCEEEEEESSHHHHHHHHHHHHT-TC----------EEEEEECCT--TCCC--C----HHHHHHHHHH--CTTC
T ss_pred             hh--cCCCeEEEEcCCchhHHHHHHHHHh-CC----------ceEEEecCC--CCCC--C----HHHHHHHHhc--CCCC
Confidence            63  3668899999999983  2221111 10          122222211  1111  2    5788888853  1367


Q ss_pred             eEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeee--cccccCccceE
Q 011777          253 AGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTM--AKGIGNGLPLG  330 (477)
Q Consensus       253 a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~pig  330 (477)
                      ++|+++++++++|.+.+    +++|.++|++||+++|+||+|+.+ ..   .+.+..+  .+|++++  +|.++++.++|
T Consensus       148 ~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~-~~---~~~~~~~--~~di~~~s~sK~~~~~~g~G  217 (386)
T 2dr1_A          148 EAVTITYNETSTGVLNP----LPELAKVAKEHDKLVFVDAVSAMG-GA---DIKFDKW--GLDVVFSSSQKAFGVPPGLA  217 (386)
T ss_dssp             CEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTBT-TB---CCCTTTT--TCSEEEEETTSTTCCCSSCE
T ss_pred             cEEEEEeecCCcchhCC----HHHHHHHHHHcCCeEEEEcccccc-Cc---ccccccc--CCcEEEEeccccccCCCceE
Confidence            88888888889998766    899999999999999999999743 21   1222222  4577765  49999766699


Q ss_pred             EEEeCHHHHHhhcc----------------c--ccccCCCCcHHHHHHHHHHHHhhchh----hHHHHHHHHHHHHHHHH
Q 011777          331 AVVTTPEIANVMAQ----------------K--IQFNTFGGNPVCSAGGLAVLRVIDKE----RRQAHCADVGSHLLGRL  388 (477)
Q Consensus       331 ~v~~~~~~~~~~~~----------------~--~~~~t~~~~~~~~aaa~a~l~~l~~~----~~~~~~~~~~~~l~~~L  388 (477)
                      ++++++++++.+..                .  ....+++.|+++++++.++|+.+.++    +..++++++.+++.+.|
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L  297 (386)
T 2dr1_A          218 IGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGV  297 (386)
T ss_dssp             EEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            99999998877632                1  12346678899999999999876543    56778888888888888


Q ss_pred             HHHHHhCCCceee-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--CCCEEEEeCCCCCcHHHHHH
Q 011777          389 RTLQERHDIIGDV-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--HGNVFRIKPPMCFTKDDADF  465 (477)
Q Consensus       389 ~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~e~i~~  465 (477)
                      +++  ........ ...+.++++.+...        ....++.+.|.++||.+.++..  ..+++||+++..++++|+++
T Consensus       298 ~~~--g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~  367 (386)
T 2dr1_A          298 REI--GLDILAEPGHESPTITAVLTPPG--------IKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQE  367 (386)
T ss_dssp             HHT--TCCBSSCTTCBCSSEEEEECCTT--------CCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCHHHHHH
T ss_pred             HHc--CCeeCcCccccCCceEEEEcCCC--------CCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHH
Confidence            775  23222110 01467777776311        1245788899999999988642  25799999998899999999


Q ss_pred             HHHHHHHHHhh
Q 011777          466 LVDALDYSMSK  476 (477)
Q Consensus       466 ~l~~l~~~l~~  476 (477)
                      ++++|++++++
T Consensus       368 ~~~~l~~~~~~  378 (386)
T 2dr1_A          368 MLDNLREVINE  378 (386)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.96  E-value=8.4e-29  Score=252.40  Aligned_cols=345  Identities=12%  Similarity=0.050  Sum_probs=229.0

Q ss_pred             EEeecCCcccccCCCCCHHHHHHHHHHHh-hccccccccCChH-HHHHHHHHHhhCCCCCCEEEEeCChHHHH--HHHHH
Q 011777           98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSK-LLQHATTIYLHHA-IADFAEALASKMPGNLKVVYFVNSGTEAN--ELAML  173 (477)
Q Consensus        98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~-~~~~~~~~~~~~~-~~~l~~~La~~~~~~~~~v~~~~sGseA~--~~Al~  173 (477)
                      .|||..|.....+-..+|.+.+++.+++. ........|.... ..+|++.++++++.+.++|++|+|+++++  ..+++
T Consensus        34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~  113 (422)
T 3d6k_A           34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISW  113 (422)
T ss_dssp             CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHH
T ss_pred             eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHH
Confidence            68888776531111235577777765431 1110122344333 67888888888877778999999999997  56556


Q ss_pred             HHHhc--cC--------CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHH
Q 011777          174 MARLS--TG--------NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDH  243 (477)
Q Consensus       174 ~ar~~--~~--------~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~  243 (477)
                      .....  .|        ++.|++.+++|+++.......+.             ..+.+|.... .++      ++++++.
T Consensus       114 ~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~-g~d------~~~l~~~  173 (422)
T 3d6k_A          114 SYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGF-------------EMINVPMTDE-GPD------MGVVREL  173 (422)
T ss_dssp             HHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTC-------------EEEEEEEETT-EEC------HHHHHHH
T ss_pred             HhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCC-------------EEEecCCCCC-CCC------HHHHHHH
Confidence            55431  01        23699999999988765443321             1111111100 111      5788888


Q ss_pred             HhccCCCCeeEEEecc-cCCCCCeeeCCchhHHHHHHHHH-HhCcEEEEcCcccC--ccCCCCCCccc-------cccCC
Q 011777          244 IDFGTSGKVAGFIAET-IQGVGGAVELAPGYLKLVYDIVR-KAGGVCIADEVQTG--FGRTGSHYWGF-------ETQGV  312 (477)
Q Consensus       244 i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~~-~~gillI~DEv~~g--fgr~G~~~~~~-------~~~gv  312 (477)
                      ++   ..++++|++.| .+|++| ..++.+++++|.++|+ +||+++|+||+|..  |+..|..+..+       +..+.
T Consensus       174 l~---~~~~~~v~~~~~~~NPtG-~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (422)
T 3d6k_A          174 VK---DPQVKGMWTVPVFGNPTG-VTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNR  249 (422)
T ss_dssp             HT---STTEEEEEECCSSCTTTC-CCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTC
T ss_pred             Hh---cCCCeEEEEcCCCCCCCC-CCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCc
Confidence            76   23678887555 566677 4668999999999999 99999999999974  65544212222       23455


Q ss_pred             CcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc---h--hhHHHHHHHHHHHHHHH
Q 011777          313 IPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID---K--ERRQAHCADVGSHLLGR  387 (477)
Q Consensus       313 ~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~---~--~~~~~~~~~~~~~l~~~  387 (477)
                      .+++.+|||..++|+|+||+++++++++.+.......+++.|+++++++.++|+...   +  ++..+.++++.+++.+.
T Consensus       250 ~i~~~S~SK~~~~GlriG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  329 (422)
T 3d6k_A          250 FWFMSSTSKITHAGSGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEI  329 (422)
T ss_dssp             EEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcChhhhcCcccceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            667779999966799999999999999988776666778899999999998886411   0  12233444455566666


Q ss_pred             HHHHHHhCCCcee-eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-C-------CCEEEEeCCCCC
Q 011777          388 LRTLQERHDIIGD-VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-H-------GNVFRIKPPMCF  458 (477)
Q Consensus       388 L~~l~~~~~~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~-------~~~iRi~p~~~~  458 (477)
                      |.+.....+.+.. .+..|+++|+++...         ....+.+.|.++||++.+++. +       .+++||+++. .
T Consensus       330 L~~~l~~~~~~~~~~p~~g~~~~~~~~~~---------~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~-~  399 (422)
T 3d6k_A          330 LDSRLSEYGVAKWTSPTGGYFISVDVVPG---------TASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL-P  399 (422)
T ss_dssp             HHHHHGGGTCEEECCCSBSSCEEEEESTT---------CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS-S
T ss_pred             HHHhcCcCCceEEeCCCcceEEEEECCCC---------CHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCC-C
Confidence            6554333333332 233578888888321         134677888999999998432 2       4789998776 8


Q ss_pred             cHHHHHHHHHHHHHHHhh
Q 011777          459 TKDDADFLVDALDYSMSK  476 (477)
Q Consensus       459 t~e~i~~~l~~l~~~l~~  476 (477)
                      +++++++++++|++++++
T Consensus       400 ~~e~i~~~~~~l~~~l~~  417 (422)
T 3d6k_A          400 PVAELEVAMDGFATCVLM  417 (422)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            999999999999998764

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.96  E-value=4.8e-27  Score=238.45  Aligned_cols=334  Identities=13%  Similarity=0.092  Sum_probs=229.1

Q ss_pred             CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc---c-cccccC---ChHHHHHHHHHHhhCCC-CCCEEEEeCCh
Q 011777           93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ---H-ATTIYL---HHAIADFAEALASKMPG-NLKVVYFVNSG  164 (477)
Q Consensus        93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~---~-~~~~~~---~~~~~~l~~~La~~~~~-~~~~v~~~~sG  164 (477)
                      .+|+.+++|..+..    ++.+|+|.+++.++++...   + ....|.   .+...+++++|+++++. +.+++++++||
T Consensus        24 ~~g~~~i~l~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~   99 (420)
T 1t3i_A           24 INGHPLVYLDNAAT----SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNA   99 (420)
T ss_dssp             ETTEECEECBTTTC----CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSH
T ss_pred             cCCCceEEecCCcc----CCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCCh
Confidence            36777888776654    4688999999999987632   1 111122   35578899999999976 56789999999


Q ss_pred             HHHHHHHHHHHHh--ccCCceEEEEccCccCCcccccc---cccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHH
Q 011777          165 TEANELAMLMARL--STGNLGMIALRNAYHGGSSGTIG---LTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQD  239 (477)
Q Consensus       165 seA~~~Al~~ar~--~~~~~~ii~~~~~yhG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (477)
                      ++|++.+++.++.  ..++++|++.+++||+.......   ..+.          .+..++...    .+..|    +++
T Consensus       100 t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~----------~~~~v~~~~----~~~~d----~~~  161 (420)
T 1t3i_A          100 TEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGA----------VLKFVQLDE----QESFD----LEH  161 (420)
T ss_dssp             HHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCC----------EEEEECBCT----TSSBC----HHH
T ss_pred             HHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCc----------EEEEeccCC----CCCcC----HHH
Confidence            9999999998731  34667899999999996421111   1111          112222211    11111    477


Q ss_pred             HHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeee
Q 011777          240 LQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTM  319 (477)
Q Consensus       240 le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~  319 (477)
                      +++.++    +++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ +|..   .+....++  +|++++
T Consensus       162 l~~~l~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~---~~~~~~~~--~di~~~  227 (420)
T 1t3i_A          162 FKTLLS----EKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHY---PLDVQLID--CDWLVA  227 (420)
T ss_dssp             HHHHCC----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS---CCCHHHHT--CSEEEE
T ss_pred             HHHhhC----CCceEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEEhhhc-cCCc---cCchhhcC--CCEEEE
Confidence            888775    46889999999999998776    8999999999999999999997 3322   12223333  677765


Q ss_pred             --cccccCccceEEEEeCHHHHHhhccccccc--------------------CCCCcHHHHHHHHH-HHHhhch---hhH
Q 011777          320 --AKGIGNGLPLGAVVTTPEIANVMAQKIQFN--------------------TFGGNPVCSAGGLA-VLRVIDK---ERR  373 (477)
Q Consensus       320 --sK~lg~G~pig~v~~~~~~~~~~~~~~~~~--------------------t~~~~~~~~aaa~a-~l~~l~~---~~~  373 (477)
                        +|.+++ .++|++++++++++.+......+                    +.+.+++.+++++. +++.+.+   +++
T Consensus       228 s~sK~~~~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~  306 (420)
T 1t3i_A          228 SGHKMCAP-TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENI  306 (420)
T ss_dssp             EGGGTTSC-TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             ehhhhcCC-CceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHH
Confidence              496653 34899999999998886543221                    23456666666554 6776654   456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCceeee------ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--
Q 011777          374 QAHCADVGSHLLGRLRTLQERHDIIGDVR------GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--  445 (477)
Q Consensus       374 ~~~~~~~~~~l~~~L~~l~~~~~~~~~v~------g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--  445 (477)
                      .++.+++.+++.+.|+++    +.+..+.      +.|.++.+.+..      .   ...++.+.|.++||.+.++..  
T Consensus       307 ~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~l~~~gi~v~~~~~~~  373 (420)
T 1t3i_A          307 HNYEVELTHYLWQGLGQI----PQLRLYGPNPKHGDRAALASFNVAG------L---HASDVATMVDQDGIAIRSGHHCT  373 (420)
T ss_dssp             HHHHHHHHHHHHHHHHTC----TTEEEESCCGGGSCBCSEEEEEETT------B---CHHHHHHHHHTTTEECBCSCTTC
T ss_pred             HHHHHHHHHHHHHHHHhC----CCeEEeCCCccccccCCEEEEEECC------C---CHHHHHHHHHHCCeEEeeccccc
Confidence            677777777777777653    2222221      247787777621      0   134677889999999988621  


Q ss_pred             ------C--CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          446 ------H--GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       446 ------~--~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                            +  .+++||+++..++++|+++++++|++++++
T Consensus       374 ~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~  412 (420)
T 1t3i_A          374 QPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRF  412 (420)
T ss_dssp             HHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence                  1  578999999889999999999999998764

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.96  E-value=5e-28  Score=245.84  Aligned_cols=347  Identities=11%  Similarity=0.020  Sum_probs=215.5

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc------ccccccC-ChHHHHHHHHHHhhC------CCCCCEEEEeC
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ------HATTIYL-HHAIADFAEALASKM------PGNLKVVYFVN  162 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~------~~~~~~~-~~~~~~l~~~La~~~------~~~~~~v~~~~  162 (477)
                      ..++||..|...     ..|.+.+++.+++.+..      .....|. .....+|++.+++++      +.+.++|+||+
T Consensus        31 ~~~i~l~~g~p~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~  105 (417)
T 3g7q_A           31 PGAIMLGGGNPA-----HIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTN  105 (417)
T ss_dssp             -CCEECSCCCCC-----CCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred             CCceEecCcCCC-----CCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeC
Confidence            457888776542     13545555555444321      0011232 223455666666554      45668999999


Q ss_pred             ChHHHHHHHHHHHHhcc---CCceEEEE-ccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHH
Q 011777          163 SGTEANELAMLMARLST---GNLGMIAL-RNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQ  238 (477)
Q Consensus       163 sGseA~~~Al~~ar~~~---~~~~ii~~-~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (477)
                      ||++|++.+++.+....   ++..|++. .++||++..............     ..+..++.. ......+      .+
T Consensus       106 G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~d------~~  173 (417)
T 3g7q_A          106 GSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSAR-----PNIELLPEG-QFKYHVD------FE  173 (417)
T ss_dssp             CHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECC-----CEEEEEGGG-EEEEECC------GG
T ss_pred             CcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhcccc-----CcccccCCc-ccccccC------HH
Confidence            99999999999775421   11277776 899999866543221100000     011111100 0000011      24


Q ss_pred             HHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc--cccCCCcce
Q 011777          239 DLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF--ETQGVIPDI  316 (477)
Q Consensus       239 ~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~--~~~gv~pDi  316 (477)
                      +++  +.    .++++|+++..+|++|. .++++.+++|.++|++||+++|+||+|..+. .+..+...  +..+....+
T Consensus       174 ~l~--~~----~~~~~v~~~~p~NptG~-~~~~~~~~~l~~~a~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~i~~  245 (417)
T 3g7q_A          174 HLH--IG----EETGMICVSRPTNPTGN-VITDEELMKLDRLANQHNIPLVIDNAYGVPF-PGIIFSEARPLWNPNIILC  245 (417)
T ss_dssp             GCC--CC----TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCCEEEECTTCTTT-TCCBCSCCCCCCCTTEEEE
T ss_pred             Hhc--cc----cCceEEEECCCCCCCCC-ccCHHHHHHHHHHHHHcCCEEEEeCCCcccc-ccccccccccCCCCCEEEE
Confidence            444  22    46777777766778884 5577889999999999999999999997532 11011111  122344456


Q ss_pred             eeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchh-----hHHHHHHHHHHHHHHHHHHH
Q 011777          317 VTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKE-----RRQAHCADVGSHLLGRLRTL  391 (477)
Q Consensus       317 vt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~-----~~~~~~~~~~~~l~~~L~~l  391 (477)
                      .+|||...+|+|+||+++++++++.+....+..+++.++++++++.+.++.....     .+.++++++.+++.+.|.+.
T Consensus       246 ~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  325 (417)
T 3g7q_A          246 MSLSKLGLPGSRCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRY  325 (417)
T ss_dssp             EESGGGTCTTSCCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             EechhccCCCcceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7899954469999999999999998887767778888999999999888754322     13445555666666666654


Q ss_pred             HHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC-----------CCEEEEeCCCCCcH
Q 011777          392 QERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH-----------GNVFRIKPPMCFTK  460 (477)
Q Consensus       392 ~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-----------~~~iRi~p~~~~t~  460 (477)
                      ....++....+..|+++++++...       .....++.+.|.++||.+.++..+           .+++||+++.  ++
T Consensus       326 l~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~  396 (417)
T 3g7q_A          326 LSEERCLIHKPEGAIFLWLWFKDL-------PITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EP  396 (417)
T ss_dssp             CCTTTCEEECCCBSSEEEEECTTC-------SSCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CH
T ss_pred             cccCCceeeCCCcceEEEEEcCCC-------CCCHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC--CH
Confidence            322222233345578888877321       012456888899999999987432           4689999874  99


Q ss_pred             HHHHHHHHHHHHHHhh
Q 011777          461 DDADFLVDALDYSMSK  476 (477)
Q Consensus       461 e~i~~~l~~l~~~l~~  476 (477)
                      ++|++++++|.+++++
T Consensus       397 ~~i~~~~~~l~~~l~~  412 (417)
T 3g7q_A          397 DKIEAGVKILAEEIER  412 (417)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998864

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.96  E-value=7.5e-28  Score=242.06  Aligned_cols=318  Identities=13%  Similarity=0.071  Sum_probs=218.9

Q ss_pred             CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCC-EEEEeCChHHHHHHHHHHHHhccCCceEEEEccCc
Q 011777          113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLK-VVYFVNSGTEANELAMLMARLSTGNLGMIALRNAY  191 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~-~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~y  191 (477)
                      .+|+|.+|+.+++..  +.. ....+...+++++|+++++...+ .|+|++||++|++.+++.+  ..++++|++..++|
T Consensus        34 ~~~~v~~a~~~~~~~--~~~-~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~--~~~gd~vl~~~~~~  108 (393)
T 3kgw_A           34 LAPRVLAAGSLRMIG--HMQ-KEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNL--LEPGDSFLTGTNGI  108 (393)
T ss_dssp             CCHHHHHHTTCCCCC--TTS-HHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHH--CCTTCEEEEEESSH
T ss_pred             CCHHHHHHhcccccC--ccc-HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhc--CCCCCEEEEEeCCc
Confidence            588999988764321  211 11235567899999999876444 5999999999999999977  34778899998888


Q ss_pred             cCCccccc-ccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCC
Q 011777          192 HGGSSGTI-GLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELA  270 (477)
Q Consensus       192 hG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~  270 (477)
                      ||...... ...            |...+.++......++      ++++++.++.   .++++|+++++++++|.+.+ 
T Consensus       109 ~~~~~~~~~~~~------------g~~~~~~~~~~~~~~d------~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~-  166 (393)
T 3kgw_A          109 WGMRAAEIADRI------------GARVHQMIKKPGEHYT------LQEVEEGLAQ---HKPVLLFLVHGESSTGVVQP-  166 (393)
T ss_dssp             HHHHHHHHHHHT------------TCEEEEEECCTTCCCC------HHHHHHHHHH---HCCSEEEEESEETTTTEECC-
T ss_pred             hhHHHHHHHHHc------------CCceEEEeCCCCCCCC------HHHHHHHHhh---CCCcEEEEeccCCcchhhcc-
Confidence            76422111 111            2222222221111222      5888888872   26788899988999997776 


Q ss_pred             chhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccCccceEEEEeCHHHHHhhccccc-
Q 011777          271 PGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGLPLGAVVTTPEIANVMAQKIQ-  347 (477)
Q Consensus       271 ~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pig~v~~~~~~~~~~~~~~~-  347 (477)
                         +++|.++|++||+++|+||+|+ +|  + ..+..+.++  +|+++  ++|+++++.++|++++++++++.+..... 
T Consensus       167 ---l~~i~~l~~~~~~~li~De~~~-~g--~-~~~~~~~~~--~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~  237 (393)
T 3kgw_A          167 ---LDGFGELCHRYQCLLLVDSVAS-LG--G-VPIYMDQQG--IDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTK  237 (393)
T ss_dssp             ---CTTHHHHHHHTTCEEEEECTTT-TT--T-SCCCTTTTT--CCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSC
T ss_pred             ---HHHHHHHHHHcCCEEEEECCcc-cc--C-cccchhhcC--CCEEEecCcccccCCCceeEEEECHHHHHHHhccCCC
Confidence               8899999999999999999987 32  1 233333344  46655  55999887789999999999888754211 


Q ss_pred             ----------------------ccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCce-e-
Q 011777          348 ----------------------FNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIG-D-  400 (477)
Q Consensus       348 ----------------------~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~-~-  400 (477)
                                            ..+++.|+.+++++.++++.+.+   ++..++++++++++.+.|+++  ...... . 
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~  315 (393)
T 3kgw_A          238 PVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM--GLKFFVKDP  315 (393)
T ss_dssp             CSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSSSSG
T ss_pred             CCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--CCeeccCCh
Confidence                                  12345678888888888887655   456778888888888888775  222211 1 


Q ss_pred             eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccC--CCCCEEEEeC-CCCCcHHHHHHHHHHHHHHHhh
Q 011777          401 VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGG--LHGNVFRIKP-PMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       401 v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--~~~~~iRi~p-~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ....+.++++.+..        .....++.+.|+++ ||++.++.  ..++++||++ ++.++++|+++++++|++++++
T Consensus       316 ~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~  387 (393)
T 3kgw_A          316 EIRLPTITTVTVPA--------GYNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQH  387 (393)
T ss_dssp             GGBCSSEEEEECCT--------TBCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCeEEEEeCCC--------CCCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHh
Confidence            11224555666521        11245788888888 99998763  2357999998 7777999999999999999865

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.96  E-value=5e-27  Score=231.41  Aligned_cols=318  Identities=17%  Similarity=0.103  Sum_probs=222.9

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAML  173 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~  173 (477)
                      +.+++|||.++.  +++| .+|+|.+++.++++..    ..|+.+...++++.++++++.+.++|+|++|++++++.+++
T Consensus        14 ~~~~~i~l~~n~--~~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~   86 (337)
T 3p1t_A           14 AAAQAVCLAFNE--NPEA-VEPRVQAAIAAAAARI----NRYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISA   86 (337)
T ss_dssp             CCCCCEECSSCC--CCSC-CCHHHHHHHHHHGGGT----TSCCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred             CCCCceEeeCCC--CCCC-CCHHHHHHHHHhhhhh----ccCCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHH
Confidence            456789998876  4576 6899999999887653    23556778899999999998777799999999999999988


Q ss_pred             HHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCee
Q 011777          174 MARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA  253 (477)
Q Consensus       174 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a  253 (477)
                      ..    +++.|++.+++|+++.......             |...+.+|...  .+..|    .++++++      .+++
T Consensus        87 ~~----~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~--~~~~d----~~~l~~~------~~~~  137 (337)
T 3p1t_A           87 EF----SSMRFVTAWPGFDGYRARIAVS-------------GLRHFEIGLTD--DLLLD----PNDLAQV------SRDD  137 (337)
T ss_dssp             HS----TTSEEEEESSSCSHHHHHHTTS-------------CCEEEEECBCT--TSSBC----HHHHTTC------CTTE
T ss_pred             hc----CCCeEEEeCCCcHHHHHHHHHc-------------CCEEEEecCCC--CCCCC----HHHHHhh------cCCC
Confidence            64    5678999999998865543322             22222222111  11111    3555443      2346


Q ss_pred             EEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeeccccc-CccceEEE
Q 011777          254 GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIG-NGLPLGAV  332 (477)
Q Consensus       254 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg-~G~pig~v  332 (477)
                      +++++..++++|.+.+    ++++.++|+++++ +|+||+|.+|+..+ .. .....+....+.++||.+| .|+|+||+
T Consensus       138 ~v~i~~p~nptG~~~~----~~~l~~l~~~~~~-~ivDea~~~~~~~~-~~-~~~~~~~~i~~~S~sK~~g~~G~r~G~~  210 (337)
T 3p1t_A          138 CVVLANPSNPTGQALS----AGELDQLRQRAGK-LLIDETYVDYSSFR-AR-GLAYGENELVFRSFSKSYGLAGLRLGAL  210 (337)
T ss_dssp             EEEEESSCTTTCCCCC----HHHHHHHHHHCSE-EEEECTTGGGSSCS-SS-CCCCBTTEEEEEESSSTTCCTTTCCEEE
T ss_pred             EEEEeCCCCCCCCCCC----HHHHHHHHHhCCc-EEEECCChhhcccc-cc-ccccCCCEEEEeeCchhccCcchheEEE
Confidence            6666666778887777    7788999999997 55599999887654 21 1222233334557999998 79999999


Q ss_pred             EeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEE
Q 011777          333 VTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGME  411 (477)
Q Consensus       333 ~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~  411 (477)
                      ++++++++.+....  .+++.++++++++.++|+..+. ++..+++.+..+++.+.|+++    + +...++.|.++++.
T Consensus       211 ~~~~~~~~~l~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-~~~~~~~~~~~~~~  283 (337)
T 3p1t_A          211 FGPSELIAAMKRKQ--WFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL----G-YRVASSEANFVLVE  283 (337)
T ss_dssp             ECCHHHHHHHHTTS--CTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT----T-CCBCCCSSSEEEEE
T ss_pred             EeCHHHHHHHHhhc--CCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----c-CEECCCCCeEEEEE
Confidence            99999998887543  4567888999988888874321 334455555566666666553    3 22345567777766


Q ss_pred             EeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC--CCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          412 LVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH--GNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      ..+           ...+.+.|.++||.+.++..+  .+++||++.   +++++++++++|+++++
T Consensus       284 ~~~-----------~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~~~~l~~al~~~~~  335 (337)
T 3p1t_A          284 NAA-----------GERTLRFLRERGIQVKDAGQFGLHHHIRISIG---REEDNDRLLAALAEYSD  335 (337)
T ss_dssp             CTT-----------THHHHHHHHHTTEECEEGGGGTCCSEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred             cCC-----------HHHHHHHHHHCCeEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHHhh
Confidence            421           135677888999999987543  479999755   79999999999998765

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.96  E-value=7.1e-28  Score=245.32  Aligned_cols=342  Identities=14%  Similarity=0.043  Sum_probs=220.2

Q ss_pred             CEEEeecCCcccccCCCCC--HHHHHHHHHHHhhcc---ccccccCChHHHHHHHHHHhhCC--CCCC--EEEEeCChHH
Q 011777           96 RRYLDAFAGIVTVSCGHCH--PDVLNAIFEQSKLLQ---HATTIYLHHAIADFAEALASKMP--GNLK--VVYFVNSGTE  166 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~--p~v~~Av~~~l~~~~---~~~~~~~~~~~~~l~~~La~~~~--~~~~--~v~~~~sGse  166 (477)
                      ..+|||..|.+..+.|+.+  |.|.+|+.++++...   +....+..+.++.+++++.....  .+.+  +|++|+||++
T Consensus        49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~  128 (420)
T 4f4e_A           49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTG  128 (420)
T ss_dssp             SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred             CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHH
Confidence            3679999987666677765  899999999887621   11112223444555555543321  0345  8999999999


Q ss_pred             HHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777          167 ANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF  246 (477)
Q Consensus       167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~  246 (477)
                      |++.++++.....+++.|++.+++|+++.......+.           .+..++..+.....++      ++++++.++.
T Consensus       129 al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~-----------~~~~v~~~~~~~~~~d------~~~l~~~l~~  191 (420)
T 4f4e_A          129 ALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGF-----------EVVAYPYYDAKTNGVN------FDGMLAALNG  191 (420)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTC-----------CEEEEECEETTTTEEC------HHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCC-----------eEEEeeeeccccCccC------HHHHHHHHHh
Confidence            9999988655455778999999999987655444322           1222221000011111      5788888863


Q ss_pred             cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC-CCcccc----ccCCCcceeeecc
Q 011777          247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS-HYWGFE----TQGVIPDIVTMAK  321 (477)
Q Consensus       247 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~-~~~~~~----~~gv~pDivt~sK  321 (477)
                      . +.++++++++..+|++|. .++.+.+++|.++|++||+++|+||+|.+|++.+. ...++.    ..+....+.+|||
T Consensus       192 ~-~~~~~~v~i~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  269 (420)
T 4f4e_A          192 Y-EPGTIVVLHACCHNPTGV-DLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSK  269 (420)
T ss_dssp             C-CTTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTT
T ss_pred             C-CCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCc
Confidence            3 346778888888888884 56888899999999999999999999999987641 122221    1222233447999


Q ss_pred             ccc-CccceEEEEe---CHHHHHhh----cccccccCCCCcHHHHHHHHHHHHhhc--------hhhHHHHHHHHHHHHH
Q 011777          322 GIG-NGLPLGAVVT---TPEIANVM----AQKIQFNTFGGNPVCSAGGLAVLRVID--------KERRQAHCADVGSHLL  385 (477)
Q Consensus       322 ~lg-~G~pig~v~~---~~~~~~~~----~~~~~~~t~~~~~~~~aaa~a~l~~l~--------~~~~~~~~~~~~~~l~  385 (477)
                      .++ .|+|+||+++   ++++++.+    .......+.+.+++++.++.++++...        -+++.++++++++++.
T Consensus       270 ~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~  349 (420)
T 4f4e_A          270 SFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLV  349 (420)
T ss_dssp             TTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999 5999999864   56655432    221223445567788887777776421        1334555666666666


Q ss_pred             HHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHH
Q 011777          386 GRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADF  465 (477)
Q Consensus       386 ~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~  465 (477)
                      +.|+++....+.....+..|+++++.+.            ...+.+.+.++||++.+++      ||++. .+++++|++
T Consensus       350 ~~L~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~l~~~gI~v~~~~------Ris~~-~~~~~~i~~  410 (420)
T 4f4e_A          350 ERLKAAGIERDFSFINAQRGMFSYSGLT------------SAQVDRLREEFGIYAVSTG------RICVA-ALNTRNLDV  410 (420)
T ss_dssp             HHHHHTTCSSCCTHHHHSCSSEEECCCC------------HHHHHHHHHHHCEECCTTS------EEEGG-GCCTTTHHH
T ss_pred             HHHHhcCCCCCceeECCCccEEEEeCCC------------HHHHHHHHHhCCEEecCCC------eEEEe-cCCHHHHHH
Confidence            6665542111222223345666665441            2356677788999998753      88875 457888999


Q ss_pred             HHHHHHHHHh
Q 011777          466 LVDALDYSMS  475 (477)
Q Consensus       466 ~l~~l~~~l~  475 (477)
                      ++++|+++++
T Consensus       411 ~~~~l~~~l~  420 (420)
T 4f4e_A          411 VANAIAAVLK  420 (420)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999998863

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.96  E-value=1.3e-27  Score=244.11  Aligned_cols=347  Identities=13%  Similarity=0.104  Sum_probs=223.9

Q ss_pred             EeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc--cccccC-ChHHHHHHHHHHhh----CCCCCCEEEEeCC
Q 011777           91 FDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH--ATTIYL-HHAIADFAEALASK----MPGNLKVVYFVNS  163 (477)
Q Consensus        91 ~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~--~~~~~~-~~~~~~l~~~La~~----~~~~~~~v~~~~s  163 (477)
                      .+.+|+.+|||..|.+.  + ..+|.|++|+.+++++...  ....|. .....+|++.++++    ++.+.++|+|++|
T Consensus        51 ~~~~~~~~i~l~~~~~~--~-~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G  127 (432)
T 3ei9_A           51 LKYPDAQVISLGIGDTT--E-PIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDG  127 (432)
T ss_dssp             HHCTTCCCEECSSCCCC--S-CCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESC
T ss_pred             hcCCCCCeEEccCCCCC--C-CCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCC
Confidence            34468899999988653  2 5789999999999986432  112232 22345666666665    3556689999999


Q ss_pred             hHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCC-CCCeeeecCCCCcCCCCCCCHHHHHHHHHH
Q 011777          164 GTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP-QGEIHHVVNPDPYHGSFGSDAARYAQDLQD  242 (477)
Q Consensus       164 GseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~le~  242 (477)
                      +++++..+..++   .+++.|++.+++|+++...+........+..... ...+..++...  ...+.       .++++
T Consensus       128 ~~~al~~l~~l~---~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~l~~  195 (432)
T 3ei9_A          128 AKCDISRLQVMF---GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTP--ENGFF-------PDLST  195 (432)
T ss_dssp             HHHHHHHHHHHH---CTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCG--GGTTS-------CCGGG
T ss_pred             hHHHHHHHHHHc---CCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCc--ccCCc-------CChhh
Confidence            999998743322   3678899999999998766544432211100000 01122222111  11111       12221


Q ss_pred             HHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccc----cCCCcceee
Q 011777          243 HIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET----QGVIPDIVT  318 (477)
Q Consensus       243 ~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~----~gv~pDivt  318 (477)
                            ..++++|+++..+|++|. +++.+.+++|.++|++||++||+||+|++|.+.+ ...++..    .+....+.+
T Consensus       196 ------~~~~~~v~l~~p~NPtG~-~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~~~i~~~S  267 (432)
T 3ei9_A          196 ------VGRTDIIFFCSPNNPTGA-AATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDD-NPRSIFEIPGAEEVAMETAS  267 (432)
T ss_dssp             ------CCCCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSS-CCSSGGGSTTGGGTEEEEEE
T ss_pred             ------CCCCCEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHcCcEEEEccchHhhccCC-CCCChhhcCCCCCeEEEEec
Confidence                  134555665555777774 5688889999999999999999999999987655 3333322    223344668


Q ss_pred             eccccc-CccceEEEEeCHHH--------HHhhcccccccCCCCcHHHHHHHHHHHHhhc---hhhHHHHHHHHHHHHHH
Q 011777          319 MAKGIG-NGLPLGAVVTTPEI--------ANVMAQKIQFNTFGGNPVCSAGGLAVLRVID---KERRQAHCADVGSHLLG  386 (477)
Q Consensus       319 ~sK~lg-~G~pig~v~~~~~~--------~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~---~~~~~~~~~~~~~~l~~  386 (477)
                      |||.+| .|+|+||+++++++        .+.+.......+++.++++++++.++++...   .++..++++++.+++++
T Consensus       268 ~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  347 (432)
T 3ei9_A          268 FSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIID  347 (432)
T ss_dssp             SHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            999999 79999999999887        5666544444556788999999988875311   13455666666666666


Q ss_pred             HHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHH-cCceeeccCCC----CCEEEEeCCCCCcHH
Q 011777          387 RLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGGLH----GNVFRIKPPMCFTKD  461 (477)
Q Consensus       387 ~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~~t~e  461 (477)
                      .|+++    +........|.++++.+..         ....++.+.|++ .||++.++..+    .+++||+  +..+++
T Consensus       348 ~L~~~----g~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e  412 (432)
T 3ei9_A          348 TFTSL----GYDVYGGKNAPYVWVHFPN---------QSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVS--AFGHRE  412 (432)
T ss_dssp             HHHHT----TCCEEECSSSSEEEEECTT---------SCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHH
T ss_pred             HHHHC----CceecCCCcceEEEEECCC---------CCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEE--ecCCHH
Confidence            66553    3222222357788887731         013456666665 59999887432    4789997  567999


Q ss_pred             HHHHHHHHHHHHHh
Q 011777          462 DADFLVDALDYSMS  475 (477)
Q Consensus       462 ~i~~~l~~l~~~l~  475 (477)
                      +|++++++|++--+
T Consensus       413 ~l~~~l~rl~~~~~  426 (432)
T 3ei9_A          413 NILEACRRFKQLYK  426 (432)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999987543

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.96  E-value=1.8e-28  Score=250.33  Aligned_cols=345  Identities=12%  Similarity=0.084  Sum_probs=229.7

Q ss_pred             EEeecCCcccccCCCCCHHHHHHH--HHHHhhccccccccCC-hHHHHHHHHHHhhCCCCCCEEEEeCChHHHH--HHHH
Q 011777           98 YLDAFAGIVTVSCGHCHPDVLNAI--FEQSKLLQHATTIYLH-HAIADFAEALASKMPGNLKVVYFVNSGTEAN--ELAM  172 (477)
Q Consensus        98 ylD~~~g~~~~~lGh~~p~v~~Av--~~~l~~~~~~~~~~~~-~~~~~l~~~La~~~~~~~~~v~~~~sGseA~--~~Al  172 (477)
                      .+||..|.....+...++.+.+++  .+++.........|.. ....+|++.++++++.+.++|++|+|+++|+  +.++
T Consensus        35 ~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~  114 (427)
T 3ppl_A           35 KLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVIS  114 (427)
T ss_dssp             CEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHH
T ss_pred             eEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHH
Confidence            578877765433322233455555  4444332111223433 3467888888888877778999999999999  5777


Q ss_pred             HHHHhccC----------CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHH
Q 011777          173 LMARLSTG----------NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQD  242 (477)
Q Consensus       173 ~~ar~~~~----------~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~  242 (477)
                      +......+          ++.|++.+++|+++.......+             ...+.+|.... .++      +++|++
T Consensus       115 ~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~-g~d------~~~l~~  174 (427)
T 3ppl_A          115 WSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFG-------------FEMISVPMNED-GPD------MDAVEE  174 (427)
T ss_dssp             HHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTT-------------CEEEEEEEETT-EEC------HHHHHH
T ss_pred             HHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcC-------------CEEEEeCCCCC-CCC------HHHHHH
Confidence            76544212          6889999999998765544332             12222211110 111      578888


Q ss_pred             HHhccCCCCeeEEEecc-cCCCCCeeeCCchhHHHHHHHH-HHhCcEEEEcCcccCccCCCCC--C---ccc----cccC
Q 011777          243 HIDFGTSGKVAGFIAET-IQGVGGAVELAPGYLKLVYDIV-RKAGGVCIADEVQTGFGRTGSH--Y---WGF----ETQG  311 (477)
Q Consensus       243 ~i~~~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~-~~~gillI~DEv~~gfgr~G~~--~---~~~----~~~g  311 (477)
                      +++   ..++++|+++| .+|++| ...+.+.+++|.++| ++||+++|+||+|+++.+.+..  .   +.+    +..+
T Consensus       175 ~l~---~~~~~~v~~~p~~~NPtG-~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (427)
T 3ppl_A          175 LVK---NPQVKGMWVVPVFSNPTG-FTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPN  250 (427)
T ss_dssp             HTT---STTEEEEEECCSSCTTTC-CCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTT
T ss_pred             HHh---cCCCeEEEECCCCCCCCC-ccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCC
Confidence            774   35788998886 566677 455777799999999 9999999999999985444311  1   111    1345


Q ss_pred             CCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc---h--hhHHHHHHHHHHHHHH
Q 011777          312 VIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID---K--ERRQAHCADVGSHLLG  386 (477)
Q Consensus       312 v~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~---~--~~~~~~~~~~~~~l~~  386 (477)
                      ...++.+|||.+++|+|+||+++++++++.+.......+++.+++++.++.++++...   +  ++..+.++++.+.+.+
T Consensus       251 ~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  330 (427)
T 3ppl_A          251 RFWAFTSTSKITLAGAGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLE  330 (427)
T ss_dssp             SEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEechhhccCcCccEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHH
Confidence            5666779999966799999999999999988776666788899999999888886411   1  1233444445555555


Q ss_pred             HHHHHHHhCCCce-eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC--------CCCCEEEEeCCCC
Q 011777          387 RLRTLQERHDIIG-DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG--------LHGNVFRIKPPMC  457 (477)
Q Consensus       387 ~L~~l~~~~~~~~-~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------~~~~~iRi~p~~~  457 (477)
                      .|.+.....+.+. ..+..|+++++++...         ...++.+.|.++||.+.+++        ...+++||+++..
T Consensus       331 ~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~---------~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~  401 (427)
T 3ppl_A          331 ILDSRLAEYGVAQWTVPAGGYFISLDVVPG---------TASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP  401 (427)
T ss_dssp             HHHHHHGGGTCCEECCCSBSSCEEEECSTT---------CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS
T ss_pred             HHHHhcCCCCceEEeCCCccEEEEEECCcc---------hHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC
Confidence            5544332222222 2233578888887321         14567888999999999842        1357899988654


Q ss_pred             CcHHHHHHHHHHHHHHHhh
Q 011777          458 FTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       458 ~t~e~i~~~l~~l~~~l~~  476 (477)
                       ++++|++++++|.+++++
T Consensus       402 -~~~~i~~~~~~l~~~l~~  419 (427)
T 3ppl_A          402 -PVEELEVAMDGVATCVLL  419 (427)
T ss_dssp             -CHHHHHHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHHHHH
Confidence             899999999999998764

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.96  E-value=2.2e-27  Score=241.51  Aligned_cols=333  Identities=13%  Similarity=0.109  Sum_probs=223.4

Q ss_pred             eCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHh--hcc-c------cccccCChHHHHHHHHHHhhCCCCCCEEEEeC
Q 011777           92 DENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSK--LLQ-H------ATTIYLHHAIADFAEALASKMPGNLKVVYFVN  162 (477)
Q Consensus        92 d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~--~~~-~------~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~  162 (477)
                      +.++..|||+.++      |+.+|+|++++.+++.  ... .      .......+...+++++|+++++.+.++|+|++
T Consensus        19 ~~~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~   92 (423)
T 3lvm_A           19 AMKLPIYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTS   92 (423)
T ss_dssp             -CCSSEECBTTTC------CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEES
T ss_pred             ccCCCEeecCCCc------CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeC
Confidence            4567789997654      4679999999999887  321 1      01112235568899999999987777999999


Q ss_pred             ChHHHHHHHHHHHHh-cc-CCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHH
Q 011777          163 SGTEANELAMLMARL-ST-GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDL  240 (477)
Q Consensus       163 sGseA~~~Al~~ar~-~~-~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  240 (477)
                      ||++|++++++.+.. +. +++.|++..++|++.......+..          .|...+.++......++      +++|
T Consensus        93 ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~~~~~d------~~~l  156 (423)
T 3lvm_A           93 GATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLER----------EGFEVTYLAPQRNGIID------LKEL  156 (423)
T ss_dssp             SHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHH----------TTCEEEEECCCTTSCCC------HHHH
T ss_pred             ChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHH----------cCCEEEEeccCCCCccC------HHHH
Confidence            999999999996653 23 368899999999987554432211          02222222221111122      5788


Q ss_pred             HHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec
Q 011777          241 QDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA  320 (477)
Q Consensus       241 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s  320 (477)
                      +++++    +++++|+++++++++|.+.+    +++|.++|++||++||+||+|++ +..     ..+.....+|++++|
T Consensus       157 ~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~-~~~-----~~~~~~~~~di~~~s  222 (423)
T 3lvm_A          157 EAAMR----DDTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV-GKL-----PIDLSQLKVDLMSFS  222 (423)
T ss_dssp             HHHCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT-TTS-----CCCTTTSCCSEEEEE
T ss_pred             HHhcC----CCcEEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc-CCC-----CcChhhcCCCEEEec
Confidence            88776    47899999999999998776    99999999999999999999873 221     123333457877655


Q ss_pred             --ccccCccceEEEEeCHHHHHhhccccc-------ccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHH
Q 011777          321 --KGIGNGLPLGAVVTTPEIANVMAQKIQ-------FNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLR  389 (477)
Q Consensus       321 --K~lg~G~pig~v~~~~~~~~~~~~~~~-------~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~  389 (477)
                        |.+| +.++|++++++++.+.+.....       ..+.+.++.+++++.++++.+.+  +++.++++++.+++++.|+
T Consensus       223 ~sK~~g-~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~  301 (423)
T 3lvm_A          223 GHKIYG-PKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIK  301 (423)
T ss_dssp             STTTTS-CSSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHhcC-CCCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              9654 4459999999887766654332       22345678888888888887654  4555666666666666654


Q ss_pred             HHHHhCCCceeeecc----ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC-------------------
Q 011777          390 TLQERHDIIGDVRGR----GLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH-------------------  446 (477)
Q Consensus       390 ~l~~~~~~~~~v~g~----g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-------------------  446 (477)
                      +    .+.+......    +.++.+.+..      .   ....+.+.|.+  |.+.++..+                   
T Consensus       302 ~----~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~  366 (423)
T 3lvm_A          302 D----IEEVYLNGDLEHGAPNILNVSFNY------V---EGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDE  366 (423)
T ss_dssp             T----STTEEEESCSTTBCTTEEEEEETT------S---CHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHH
T ss_pred             c----CCCEEEeCCccccCCCeEEEEeCC------C---CHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCcc
Confidence            3    3323222221    3455665521      1   13456666665  777664210                   


Q ss_pred             --CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          447 --GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       447 --~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                        .+++||+++..++++|+++++++|++++++
T Consensus       367 ~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~  398 (423)
T 3lvm_A          367 LAHSSIRFSLGRFTTEEEIDYTIELVRKSIGR  398 (423)
T ss_dssp             HHHTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence              378999999999999999999999998864

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.96  E-value=3.6e-27  Score=236.35  Aligned_cols=331  Identities=15%  Similarity=0.150  Sum_probs=222.7

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-cccc-----ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-HATT-----IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANEL  170 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-~~~~-----~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~  170 (477)
                      .|||+.++      |+.+|+|.+++.+++.... ....     ........+++++|+++++.+.+++++++||++|++.
T Consensus         3 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~   76 (384)
T 1eg5_A            3 VYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINW   76 (384)
T ss_dssp             EECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHH
T ss_pred             EEEecCcc------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHH
Confidence            58887653      4789999999999987531 1110     0113446789999999987666789999999999999


Q ss_pred             HHHHHHh--ccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          171 AMLMARL--STGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       171 Al~~ar~--~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      +++.++.  ..+++.|++.+++||+.......+...          |...+.+|.......+      .++|++.++   
T Consensus        77 ~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~----------g~~~~~v~~~~~~~~d------~~~l~~~i~---  137 (384)
T 1eg5_A           77 ILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMK----------GFKVKYVPVDSRGVVK------LEELEKLVD---  137 (384)
T ss_dssp             HHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHT----------TCEEEECCBCTTSCBC------HHHHHHHCC---
T ss_pred             HHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhc----------CCEEEEEccCCCCccC------HHHHHHHhC---
Confidence            9998763  135678999999999865443211100          1122222211111111      477888775   


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhC--cEEEEcCcccCccCCCCCCccccccCCCcceeeec--cccc
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAG--GVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIG  324 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g--illI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg  324 (477)
                       +++++|+++++++++|.+.+    +++|.++|++||  +++|+||+|+ ||..   .+.++  ...+|++++|  |.+|
T Consensus       138 -~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~---~~~~~--~~~~di~~~s~sK~~g  206 (384)
T 1eg5_A          138 -EDTFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKI---PFSLE--KLEVDYASFSAHKFHG  206 (384)
T ss_dssp             -TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTS---CCCCT--TTCCSEEEEEGGGGTS
T ss_pred             -CCCeEEEEECCCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCc---ccCch--hcCCCEEEecHHHhcC
Confidence             36888989998899997776    899999999999  9999999997 6532   22222  2346877655  9876


Q ss_pred             C-ccceEEEEeCHHH--HHhhccc---ccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCC
Q 011777          325 N-GLPLGAVVTTPEI--ANVMAQK---IQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHD  396 (477)
Q Consensus       325 ~-G~pig~v~~~~~~--~~~~~~~---~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~  396 (477)
                      . |  +|++++++++  ...+...   ....+++.|+++++++.++|+.+.+  ++..++++++.+++.+.|++.  ...
T Consensus       207 ~~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~  282 (384)
T 1eg5_A          207 PKG--VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNL--GAH  282 (384)
T ss_dssp             CTT--CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT--TCE
T ss_pred             CCc--eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC--CeE
Confidence            4 5  7999999876  2222211   1124567889999999999987533  456667777777777777652  111


Q ss_pred             Cceeeec-cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC---------------------CCEEEEeC
Q 011777          397 IIGDVRG-RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH---------------------GNVFRIKP  454 (477)
Q Consensus       397 ~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---------------------~~~iRi~p  454 (477)
                      ......+ .+.++++.+..      .   ...++.+.|.++||.+.++..+                     .+++||++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~  353 (384)
T 1eg5_A          283 IITPLEISLPNTLSVSFPN------I---RGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISL  353 (384)
T ss_dssp             ECSCTTSBCTTEEEEECTT------C---CHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEEC
T ss_pred             EeCCcccCCCCEEEEEeCC------C---CHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEEC
Confidence            1111111 24455665421      0   1356788889999999885321                     36899998


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhh
Q 011777          455 PMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       455 ~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +..++++|+++++++|++++++
T Consensus       354 ~~~~~~~~i~~~~~~l~~~~~~  375 (384)
T 1eg5_A          354 CKYNTEEEVDYFLKKIEEILSF  375 (384)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Confidence            8889999999999999998875

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.96  E-value=2e-27  Score=241.67  Aligned_cols=342  Identities=9%  Similarity=-0.023  Sum_probs=218.8

Q ss_pred             CCEEEeecCCccc---ccCCCCCHHHHHHHHHHHhhc--cccccccCChHHHHHHHHHHhhCCC-CCCEEEEeCChHHHH
Q 011777           95 GRRYLDAFAGIVT---VSCGHCHPDVLNAIFEQSKLL--QHATTIYLHHAIADFAEALASKMPG-NLKVVYFVNSGTEAN  168 (477)
Q Consensus        95 G~~ylD~~~g~~~---~~lGh~~p~v~~Av~~~l~~~--~~~~~~~~~~~~~~l~~~La~~~~~-~~~~v~~~~sGseA~  168 (477)
                      |..+|||..|.+.   ..+. .++.|.+++.+.....  .+....+..+.++.+++++...... ..++|++|+||++|+
T Consensus        37 ~~~~i~l~~g~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al  115 (418)
T 3rq1_A           37 RENVVNGTLGAIHDEEGNLV-FLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGI  115 (418)
T ss_dssp             GGGCEECCSSCCBCTTSCBC-CCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHH
T ss_pred             CCCeEECCCCcccCCCCCcc-ccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchHHHH
Confidence            4456777766541   1222 5678888876644321  1211122334455666656554321 122899999999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc-
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG-  247 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~-  247 (477)
                      +.+++...  .+++.|++.+++|+++.......+             ...+.+|..... +..|    ++++++.++.. 
T Consensus       116 ~~~~~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g-------------~~~~~v~~~~~~-~~~d----~~~l~~~l~~~~  175 (418)
T 3rq1_A          116 HHLIHNYT--EPGDEVLTADWYWGAYRVICSDTG-------------RTLVTYSLFDEH-NNFN----HEAFQNRVNELA  175 (418)
T ss_dssp             HHHHHHHS--CTTCEEEEESSCCTHHHHHHHHTT-------------CEEEEECSBCTT-SSBC----HHHHHHHHHHHH
T ss_pred             HHHHHHhc--CCCCEEEECCCCchhHHHHHHHcC-------------CEEEEEeeeCCC-CCcC----HHHHHHHHHHhh
Confidence            99998653  356889999999998766544332             222222211111 1112    47777777621 


Q ss_pred             CCCCeeEEEec-ccCCCCCeeeCCchhHHHHHHHHH------HhCcEEEEcCcccCccCCCCC--CccccccCCCcc---
Q 011777          248 TSGKVAGFIAE-TIQGVGGAVELAPGYLKLVYDIVR------KAGGVCIADEVQTGFGRTGSH--YWGFETQGVIPD---  315 (477)
Q Consensus       248 ~~~~~a~vi~e-pi~~~~G~~~~~~~~l~~l~~l~~------~~gillI~DEv~~gfgr~G~~--~~~~~~~gv~pD---  315 (477)
                      .++..++++++ |.+|++|. .++.+.+++|.++|+      +||+++|+||+|.+|++.|..  .+.....++.+|   
T Consensus       176 ~~~~~~~vi~~~p~~NPtG~-~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (418)
T 3rq1_A          176 AKQTNVVVIFNTPGNNPTGY-SIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILT  254 (418)
T ss_dssp             HHCSEEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEE
T ss_pred             ccCCCEEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceE
Confidence            01234466666 53777784 557788999999999      899999999999999877621  122233455555   


Q ss_pred             ee--eeccccc-CccceEEEEe---CHHHHHhhccccc---cc-CCCCcHHHHHHHHHHHHhhc------h--hhHHHHH
Q 011777          316 IV--TMAKGIG-NGLPLGAVVT---TPEIANVMAQKIQ---FN-TFGGNPVCSAGGLAVLRVID------K--ERRQAHC  377 (477)
Q Consensus       316 iv--t~sK~lg-~G~pig~v~~---~~~~~~~~~~~~~---~~-t~~~~~~~~aaa~a~l~~l~------~--~~~~~~~  377 (477)
                      ++  +|||.++ .|+|+||+++   ++++++.+.....   .+ ..+.+.++++++.++|+..+      +  +++.+++
T Consensus       255 i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  334 (418)
T 3rq1_A          255 CVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLI  334 (418)
T ss_dssp             EEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            22  7999998 5999999999   8999888765321   12 23578888888888875431      0  1344556


Q ss_pred             HHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCC
Q 011777          378 ADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMC  457 (477)
Q Consensus       378 ~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~  457 (477)
                      +++.+++.+.|+++  ....  .....|.++++.+.           ...++.+.|.++||++.++   ++++||+.. .
T Consensus       335 ~~~~~~l~~~L~~~--g~~~--~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gi~v~~g---~~~iRis~~-~  395 (418)
T 3rq1_A          335 RDRADIFKQEAAQV--GLPM--LPYRGGFFITIPTD-----------SANAICEELKKEHIYVIAL---ANGIRIAAC-G  395 (418)
T ss_dssp             HHHHHHHHHHHHHH--TCCC--CCCCSSSEEEEECT-----------THHHHHHHHHHTTEECEEC---SSEEEEEGG-G
T ss_pred             HHHHHHHHHHHHhc--CCCC--CCCCceEEEEcCCC-----------CHHHHHHHHHhCCEEEecC---CCCeEEEEe-c
Confidence            66666676766665  2222  12233455555441           1356778899999999987   468999854 4


Q ss_pred             CcHHHHHHHHHHHHHHHhhC
Q 011777          458 FTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       458 ~t~e~i~~~l~~l~~~l~~l  477 (477)
                      ++++++++++++|+++++++
T Consensus       396 ~~~~~i~~~~~~l~~~l~~~  415 (418)
T 3rq1_A          396 IPKCQMTGLAEKIYNAMKSL  415 (418)
T ss_dssp             SCHHHHTTHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHH
Confidence            69999999999999998753

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.96  E-value=2.3e-27  Score=243.25  Aligned_cols=351  Identities=11%  Similarity=0.034  Sum_probs=219.9

Q ss_pred             CEEE-eecCCcccccCCCCCHHHHHHHHHHHhhcccc-------c------cccCC-hHHHHHHHHHHhhC------CCC
Q 011777           96 RRYL-DAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA-------T------TIYLH-HAIADFAEALASKM------PGN  154 (477)
Q Consensus        96 ~~yl-D~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~-------~------~~~~~-~~~~~l~~~La~~~------~~~  154 (477)
                      ..+| ||..|...     ..|.+.+++.+++.+....       .      ..|.. ....++++.+++++      +.+
T Consensus        31 ~~~i~~l~~g~p~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~  105 (444)
T 3if2_A           31 DQPVNMLGGGNPA-----KIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLT  105 (444)
T ss_dssp             SSCCEECSCCCCC-----CCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCC
T ss_pred             chhhhccCCCCCC-----cccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCC
Confidence            3466 77666542     2466666666655542111       0      12322 22345555555554      456


Q ss_pred             CCEEEEeCChHHHHHHHHHHHHhccCCc--------------eEEEE-ccCccCCcccccccccCCCCCCCCCCCCeeee
Q 011777          155 LKVVYFVNSGTEANELAMLMARLSTGNL--------------GMIAL-RNAYHGGSSGTIGLTALNTWKYPIPQGEIHHV  219 (477)
Q Consensus       155 ~~~v~~~~sGseA~~~Al~~ar~~~~~~--------------~ii~~-~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (477)
                      .++|+||+||++|++++++.+..  .++              .||+. .++|+++...........       ..+...+
T Consensus       106 ~~~i~~t~G~t~al~~~~~~l~~--~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~-------~~~~~~~  176 (444)
T 3if2_A          106 SENIALTNGSQNAFFYLFNLFGG--AFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFA-------AVLPHID  176 (444)
T ss_dssp             GGGEEEESSHHHHHHHHHHHSSE--EEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEE-------ECCCEEE
T ss_pred             HHHEEEecCcHHHHHHHHHHHhC--CCccccccccccccccceEEEeCCCCccchhhcccccchhh-------ccCceEE
Confidence            68999999999999999987643  222              46654 889998765432111000       0122222


Q ss_pred             cCCCCc-CC--CCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccC
Q 011777          220 VNPDPY-HG--SFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG  296 (477)
Q Consensus       220 ~~~~~~-~~--~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g  296 (477)
                      +++... .+  .+..|    +++|+++++... .++++|+++..+|++|. +.+.+.+++|.++|++||++||+||+|..
T Consensus       177 ~~~~~~~~g~~~~~~d----~~~l~~~l~~~~-~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~a~~~~~~li~De~~~~  250 (444)
T 3if2_A          177 EVTHDGEEGFFKYRVD----FEALENLPALKE-GRIGAICCSRPTNPTGN-VLTDEEMAHLAEIAKRYDIPLIIDNAYGM  250 (444)
T ss_dssp             EEEETTEEEEEEEECC----HHHHHTCHHHHT-TCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCCEEEECTTCT
T ss_pred             ecccccccCccccCCC----HHHHHHHHHhcC-CCceEEEeCCCCCCCCC-cCCHHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            211100 00  01111    477877643211 45677777655677775 55788899999999999999999999974


Q ss_pred             ccCCCCCCccc--cccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchh---
Q 011777          297 FGRTGSHYWGF--ETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKE---  371 (477)
Q Consensus       297 fgr~G~~~~~~--~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~---  371 (477)
                      +. .+..+...  ...+...++.++||...+|+|+||+++++++++.+....+..+++.++++++++.+.++.....   
T Consensus       251 ~~-~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~  329 (444)
T 3if2_A          251 PF-PNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRIKQLS  329 (444)
T ss_dssp             TT-TCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHHHHHH
T ss_pred             cc-cccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcCchhHHH
Confidence            31 11011111  2234556677899985569999999999999998877666677888999999998888753321   


Q ss_pred             --hHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC---
Q 011777          372 --RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH---  446 (477)
Q Consensus       372 --~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---  446 (477)
                        .+.++++++.+.+.+.|.+.....++....+..|+++++++....       ....++.+.|.++||.+.++..+   
T Consensus       330 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~l~~~l~~~gi~v~~g~~~~~~  402 (444)
T 3if2_A          330 DNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLP-------ISTLDLYERLKAKGTLIVPSEYFFPG  402 (444)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCS-------SCHHHHHHHHHHTTEECEEGGGSCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCC-------CCHHHHHHHHHHCCeEEecchhhcCC
Confidence              134445555566666665533222222223456788888874210       12456788899999999987432   


Q ss_pred             ---------CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          447 ---------GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       447 ---------~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                               .+++||+++.  ++++|++++++|.+++++
T Consensus       403 ~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~  439 (444)
T 3if2_A          403 VDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGEVVRE  439 (444)
T ss_dssp             CCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHHHHHH
T ss_pred             CCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHHHHHH
Confidence                     1589999886  999999999999998864

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.96  E-value=5.9e-27  Score=237.80  Aligned_cols=331  Identities=12%  Similarity=0.029  Sum_probs=230.3

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-cccc--c---cCChHHHHHHHHHHhhCCCCCCEEEEeCChHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-HATT--I---YLHHAIADFAEALASKMPGNLKVVYFVNSGTEA  167 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-~~~~--~---~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA  167 (477)
                      +|..|||+.+      .|+.+|+|.+++.+++.... +...  .   ...+...+++++|+++++.+.++|+|++||+++
T Consensus        27 ~~~~yld~~~------~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a  100 (416)
T 1qz9_A           27 EGVIYLDGNS------LGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN  100 (416)
T ss_dssp             TTCEECCTTT------SCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred             CCeEeecCCC------cCCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHH
Confidence            5789999754      35788999999999987531 1111  1   123567899999999998766789999999999


Q ss_pred             HHHHHHHHHhc----cCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHH
Q 011777          168 NELAMLMARLS----TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDH  243 (477)
Q Consensus       168 ~~~Al~~ar~~----~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~  243 (477)
                      ++.+++.++..    .+++++|++.+.+|+.....+...... ..     .|...+.++.             +++|+++
T Consensus       101 l~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~-~~-----~g~~~~~v~~-------------~~~l~~~  161 (416)
T 1qz9_A          101 LFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADM-LQ-----QGYTLRLVDS-------------PEELPQA  161 (416)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHH-HC-----SSCEEEEESS-------------GGGHHHH
T ss_pred             HHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHH-hc-----CCceEEEeCc-------------HHHHHHH
Confidence            99999977533    345567777777887543322110000 00     0112222111             2677777


Q ss_pred             HhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeee--cc
Q 011777          244 IDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTM--AK  321 (477)
Q Consensus       244 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~--sK  321 (477)
                      ++    +++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ +|...   +..+.+  .+|++++  +|
T Consensus       162 i~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~~--~~d~~~~s~~K  227 (416)
T 1qz9_A          162 ID----QDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP---VDLHQA--GADYAIGCTYK  227 (416)
T ss_dssp             CS----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC---CCHHHH--TCSEEEECSSS
T ss_pred             hC----CCceEEEEeccccCcccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcC---CChhhc--CCCEEEecCcc
Confidence            75    46889999999999998776    8999999999999999999997 44322   222223  3677765  59


Q ss_pred             cccCccce-EEEEeCHHHHHhhcccccc-----------------------cCCCCcHHHHHHHHHHHHhhch---hhHH
Q 011777          322 GIGNGLPL-GAVVTTPEIANVMAQKIQF-----------------------NTFGGNPVCSAGGLAVLRVIDK---ERRQ  374 (477)
Q Consensus       322 ~lg~G~pi-g~v~~~~~~~~~~~~~~~~-----------------------~t~~~~~~~~aaa~a~l~~l~~---~~~~  374 (477)
                      .+++|.++ |++++++++++.+.....+                       ..++.|+.+++++.++++.+.+   +++.
T Consensus       228 ~l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~  307 (416)
T 1qz9_A          228 YLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLR  307 (416)
T ss_dssp             TTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cCCCCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence            99888888 9999999987766542111                       1234678888888889987753   4577


Q ss_pred             HHHHHHHHHHHHHHHHHHH--hCCCceee--eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEE
Q 011777          375 AHCADVGSHLLGRLRTLQE--RHDIIGDV--RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVF  450 (477)
Q Consensus       375 ~~~~~~~~~l~~~L~~l~~--~~~~~~~v--~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~i  450 (477)
                      ++++++.+++.+.|+++..  ........  ...+.++++.+.        .   ..++.+.|.++||.+...+  .+++
T Consensus       308 ~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------~---~~~l~~~l~~~gi~~~~~~--~~~l  374 (416)
T 1qz9_A          308 RKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP--------E---GYAVIQALIDRGVIGDYRE--PRIM  374 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT--------T---HHHHHHHHHTTTEECEEET--TTEE
T ss_pred             HHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC--------C---HHHHHHHHHhCCcEeccCC--CCeE
Confidence            8888888899888877532  12111111  023567777652        1   3568888999999986532  6799


Q ss_pred             EEeCC-CCCcHHHHHHHHHHHHHHHhh
Q 011777          451 RIKPP-MCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       451 Ri~p~-~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ||+++ +.++++|+++++++|++++++
T Consensus       375 Ris~~~~~~t~~~i~~~~~~l~~~~~~  401 (416)
T 1qz9_A          375 RFGFTPLYTTFTEVWDAVQILGEILDR  401 (416)
T ss_dssp             EEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEeCcccCCCHHHHHHHHHHHHHHHhc
Confidence            99987 588999999999999998864

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.95  E-value=5e-27  Score=233.57  Aligned_cols=332  Identities=16%  Similarity=0.145  Sum_probs=224.2

Q ss_pred             EEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCC--CCEEEEeCChHHHHHHHHHHH
Q 011777           98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGN--LKVVYFVNSGTEANELAMLMA  175 (477)
Q Consensus        98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~--~~~v~~~~sGseA~~~Al~~a  175 (477)
                      ++||..|.    ++ .+|+|++|+.+++   .+....+..+...+++++|+++++..  .+++++++||++|++.+++.+
T Consensus         5 ~~~~~~gp----~~-~~~~v~~a~~~~~---~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~   76 (366)
T 1m32_A            5 YLLLTPGP----LT-TSRTVKEAMLFDS---CTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSA   76 (366)
T ss_dssp             CEECSSSS----CC-CCHHHHHTTCCCC---CTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHS
T ss_pred             cccccCCC----cC-CCHHHHHHHhhhh---cCCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHh
Confidence            67877762    33 7899999997753   22211112256788999999988622  247999999999999999976


Q ss_pred             HhccCCceEEEEccCccCCccc-ccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeE
Q 011777          176 RLSTGNLGMIALRNAYHGGSSG-TIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAG  254 (477)
Q Consensus       176 r~~~~~~~ii~~~~~yhG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~  254 (477)
                      +.  ++++|+++++.||+.... .....+.          .+..++...  ....  |    .++|+++++..  .++++
T Consensus        77 ~~--~gd~vi~~~~~~~~~~~~~~~~~~g~----------~~~~v~~~~--~~~~--d----~~~l~~~l~~~--~~~~~  134 (366)
T 1m32_A           77 LG--PQDKVLIVSNGAYGARMVEMAGLMGI----------AHHAYDCGE--VARP--D----VQAIDAILNAD--PTISH  134 (366)
T ss_dssp             CC--TTCCEEEEESSHHHHHHHHHHHHHTC----------CEEEEECCT--TSCC--C----HHHHHHHHHHC--TTCCE
T ss_pred             cC--CCCeEEEEeCCCccHHHHHHHHHhCC----------ceEEEeCCC--CCCC--C----HHHHHHHHhcC--CCeEE
Confidence            43  556788888888875321 1111111          122222211  1111  2    57888888732  24566


Q ss_pred             EEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccCccceEEE
Q 011777          255 FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGNGLPLGAV  332 (477)
Q Consensus       255 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G~pig~v  332 (477)
                      |++...++++|.+.+    +++|.++|++||+++|+||+|+ ++..+   +.++.  ..+|++  +++|+++++.++|++
T Consensus       135 v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~~---~~~~~--~~~di~~~s~~K~~~~~~g~G~~  204 (366)
T 1m32_A          135 IAMVHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGIP---MDIAA--LHIDYLISSANKCIQGVPGFAFV  204 (366)
T ss_dssp             EEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSC---CCTTT--TTCSEEEEESSSTTCCCSSEEEE
T ss_pred             EEEecccCCcceecC----HHHHHHHHHHcCCEEEEECCcc-ccCcC---ccccc--cCccEEEecCcccccCCCceEEE
Confidence            666666677787776    8999999999999999999997 44322   22222  236766  578999877778999


Q ss_pred             EeCHHHHHhhccccc------------------ccCCCCcHHHHHHHHHHHHhhchh----hHHHHHHHHHHHHHHHHHH
Q 011777          333 VTTPEIANVMAQKIQ------------------FNTFGGNPVCSAGGLAVLRVIDKE----RRQAHCADVGSHLLGRLRT  390 (477)
Q Consensus       333 ~~~~~~~~~~~~~~~------------------~~t~~~~~~~~aaa~a~l~~l~~~----~~~~~~~~~~~~l~~~L~~  390 (477)
                      ++++++++.+.....                  ...++.|+.+++++.++++.+.+.    +..++++++.+++.+.|++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~  284 (366)
T 1m32_A          205 IAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRA  284 (366)
T ss_dssp             EEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHH
Confidence            999999877654210                  013677889999999999876543    4677778888888888876


Q ss_pred             HHHhCCCceee-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-CCCEEEEeCCCCCcHHHHHHHHH
Q 011777          391 LQERHDIIGDV-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-HGNVFRIKPPMCFTKDDADFLVD  468 (477)
Q Consensus       391 l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~iRi~p~~~~t~e~i~~~l~  468 (477)
                      +  ........ ...|.++++.+....      .....++.+.|.++||.+.++.. ..+++||+++..++++|++++++
T Consensus       285 ~--~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~  356 (366)
T 1m32_A          285 L--GFNTLLDDELHSPIITAFYSPEDP------QYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLT  356 (366)
T ss_dssp             T--TCCBSSCGGGBCSSEEEEECCCCT------TCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHH
T ss_pred             C--CCeeccCchhcCceEEEEEcCccC------CCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHH
Confidence            5  23222211 124567788763200      11245788899999999988643 35789999999999999999999


Q ss_pred             HHHHHHhhC
Q 011777          469 ALDYSMSKL  477 (477)
Q Consensus       469 ~l~~~l~~l  477 (477)
                      +|+++++++
T Consensus       357 ~l~~~~~~~  365 (366)
T 1m32_A          357 AIRTAMYWT  365 (366)
T ss_dssp             HHHHHCTTC
T ss_pred             HHHHHHHhc
Confidence            999988653

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.95  E-value=3.5e-27  Score=236.96  Aligned_cols=332  Identities=14%  Similarity=0.060  Sum_probs=224.3

Q ss_pred             EEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHH
Q 011777           89 YLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEAN  168 (477)
Q Consensus        89 ~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~  168 (477)
                      .++|.|++.+.++...++..+++|..++..+.+                   .+++++++++++.+ +.++|++|||+|+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~-------------------~~~~~~l~~~~~~~-~~v~~~~sgt~a~   64 (379)
T 3ke3_A            5 LRQDIDPNGLLEYSVVYTDRALNHMSKAFQEVM-------------------NDLLSNLKTVYNAE-AAVIIPGSGTYGM   64 (379)
T ss_dssp             ---CCSTTSCCCCCSSCCTTSCCTTSHHHHHHH-------------------HHHHHHHHHHHTCS-EEEEEESCHHHHH
T ss_pred             hhccCCHHHHHHHHHhccCCCCCCCCHHHHHHH-------------------HHHHHHHHHHhCCC-CEEEEcCChhHHH
Confidence            467999999999987776666788777655433                   34556677777655 6899999999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccc-cCCCCCCCCCCCCeeeecCCC----CcCCCC-CCCHHHHHHHHHH
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLT-ALNTWKYPIPQGEIHHVVNPD----PYHGSF-GSDAARYAQDLQD  242 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~le~  242 (477)
                      +++++.+   .++++||+++++|||.....+... +..        ..+..++.+.    .++.++ ..|    ++++++
T Consensus        65 ~~~~~~~---~~gd~vi~~~~~~~~~~~~~~~~~~g~~--------~~~~~~~~~~~g~~~~~~~~~~~d----~~~l~~  129 (379)
T 3ke3_A           65 EAVARQL---TIDEDCLIIRNGWFSYRWTQILEKGKFA--------KSSTVLTAERTEDTEAPKPFAPVD----IETAVA  129 (379)
T ss_dssp             HHHHHHH---CTTCEEEEEECSHHHHHHHHHHHHHCCS--------SEEEEEECEESSCCSSCCCEECCC----HHHHHH
T ss_pred             HHHHHhC---CCCCeEEEEeCCchhHHHHHHHHHhCCC--------CceEEEeccccccccccCCCCCCC----HHHHHH
Confidence            9988643   467899999999998754332221 100        0112222110    111111 011    578888


Q ss_pred             HHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeeccc
Q 011777          243 HIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKG  322 (477)
Q Consensus       243 ~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~  322 (477)
                      +++.   .++++|++..+++++|. ..+.+++++|.++|++||+++|+||+|+  |  + ..+.++.+++.+.+.+++|+
T Consensus       130 ~i~~---~~~~~v~~~~~~~~~G~-~~~~~~l~~i~~~~~~~~~~li~D~~~~--g--~-~~~~~~~~~~d~~~~s~~K~  200 (379)
T 3ke3_A          130 KIKE---DKSAIVYAPHVETSSGI-ILSEEYIKALSEAVHSVGGLLVIDCIAS--G--C-VWLDMKELGIDVLISAPQKG  200 (379)
T ss_dssp             HHHH---HTCSEEEEESEETTTTE-ECCHHHHHHHHHHHHHTTCEEEEECTTC--T--T-CCCCHHHHTCSEEEECTTTT
T ss_pred             HHhh---cCCcEEEEEeecCCCce-eCCHHHHHHHHHHHHHcCCEEEEEeccc--C--C-ccccccccCCCEEEecchhh
Confidence            8852   24667888777777784 5578899999999999999999999987  3  3 45556666776666677799


Q ss_pred             ccCccceEEEEeCHHHHHhhcccc---c-------------------ccCCCCcHHHHHHHHHHHHhhchh---hHHHHH
Q 011777          323 IGNGLPLGAVVTTPEIANVMAQKI---Q-------------------FNTFGGNPVCSAGGLAVLRVIDKE---RRQAHC  377 (477)
Q Consensus       323 lg~G~pig~v~~~~~~~~~~~~~~---~-------------------~~t~~~~~~~~aaa~a~l~~l~~~---~~~~~~  377 (477)
                      ++++.++|++++++++++.+....   .                   ..+++.|+.++++..++|+.+.++   +..++.
T Consensus       201 l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~  280 (379)
T 3ke3_A          201 WSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQ  280 (379)
T ss_dssp             TCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence            988778999999999988775311   0                   012366788888888999887654   566777


Q ss_pred             HHHHHHHHHHHHHHHHhCCCceeeec-cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-------CCCE
Q 011777          378 ADVGSHLLGRLRTLQERHDIIGDVRG-RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-------HGNV  449 (477)
Q Consensus       378 ~~~~~~l~~~L~~l~~~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------~~~~  449 (477)
                      +++.+++++.|+++  .......... .+.+..+..  +      .. . ....+.|.++||.+.++..       .+++
T Consensus       281 ~~l~~~l~~~l~~~--g~~~~~~~~~~~~~i~~~~~--~------~~-~-~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~  348 (379)
T 3ke3_A          281 WELGNRVRKVLTDK--GIESVAAEGFEAPGVVVSYT--E------RD-D-MHKGSAFAEAGLQIAAGVPLKVGEPDNFKT  348 (379)
T ss_dssp             HHHHHHHHHHHHHT--TCCBSBCTTCBCSSEEEEEC--S------CH-H-HHSSHHHHHTTCCCEECCCCSSCCCTTCCE
T ss_pred             HHHHHHHHHHHHHc--CCEecCCccccCceEEEEcc--C------Cc-c-hHHHHHHHHCCeEEeCCccccccccCcCCE
Confidence            78888888888775  2222221111 122222222  1      11 1 1236778899999987631       1579


Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          450 FRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       450 iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +||+++..+|++||++++++|++++++
T Consensus       349 lRis~~~~~t~~di~~~~~~l~~~l~~  375 (379)
T 3ke3_A          349 FRLGLFGLDKLTDIDGTVERFEKALDE  375 (379)
T ss_dssp             EEEECCSHHHHTCHHHHHHHHHHHHHH
T ss_pred             EEEeCCcCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998865

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.95  E-value=2.1e-27  Score=239.59  Aligned_cols=340  Identities=14%  Similarity=0.047  Sum_probs=216.3

Q ss_pred             EEEeecCCcccccCCCCC--HHHHHHHHH-HHhhcc-c--cccccCChHHHHHHHHHHhhCC--CCCC--EEEEeCChHH
Q 011777           97 RYLDAFAGIVTVSCGHCH--PDVLNAIFE-QSKLLQ-H--ATTIYLHHAIADFAEALASKMP--GNLK--VVYFVNSGTE  166 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~--p~v~~Av~~-~l~~~~-~--~~~~~~~~~~~~l~~~La~~~~--~~~~--~v~~~~sGse  166 (477)
                      .++||..|.+..+.|+.+  |+|.+++.+ +++... +  ....+..+.++++++.+.....  .+.+  +|++|+||++
T Consensus        27 ~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~  106 (397)
T 3fsl_A           27 DKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSG  106 (397)
T ss_dssp             CCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHH
T ss_pred             CeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHH
Confidence            578998887655666665  899999998 876521 1  1111222334444444433221  0356  8999999999


Q ss_pred             HHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777          167 ANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF  246 (477)
Q Consensus       167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~  246 (477)
                      |++.++++.....+++.|++.+++|+++.......+.           .+..++........+  |    ++++++.++.
T Consensus       107 a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~-----------~~~~~~~~~~~~~~~--d----~~~l~~~l~~  169 (397)
T 3fsl_A          107 ALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGF-----------EVSTYPWYDEATNGV--R----FNDLLATLKT  169 (397)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTC-----------CEEEECCEETTTTEE--C----HHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCC-----------ceEEEeeeeccCCcC--c----HHHHHHHHHh
Confidence            9999987655455778999999999987655443321           112222100001111  1    5788888864


Q ss_pred             cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC-CCccc----cccCCCcceeeecc
Q 011777          247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS-HYWGF----ETQGVIPDIVTMAK  321 (477)
Q Consensus       247 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~-~~~~~----~~~gv~pDivt~sK  321 (477)
                      . ..++++++++..+|++|. .++.+.+++|.++|++||+++|+||+|++|.+.+. ....+    +..+....+.+|||
T Consensus       170 ~-~~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  247 (397)
T 3fsl_A          170 L-QAGSIVLLHPCCHNPTGA-DLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSK  247 (397)
T ss_dssp             C-CTTCEEEECSSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTT
T ss_pred             C-CCCCEEEEeCCCCCCCCc-CCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccc
Confidence            3 245677777777778884 56788899999999999999999999999876531 12222    12333344557999


Q ss_pred             ccc-CccceEEEEe---CHHHHHhhccc----ccccCCCCcHHHHHHHHHHHHhh------c--hhhHHHHHHHHHHHHH
Q 011777          322 GIG-NGLPLGAVVT---TPEIANVMAQK----IQFNTFGGNPVCSAGGLAVLRVI------D--KERRQAHCADVGSHLL  385 (477)
Q Consensus       322 ~lg-~G~pig~v~~---~~~~~~~~~~~----~~~~t~~~~~~~~aaa~a~l~~l------~--~~~~~~~~~~~~~~l~  385 (477)
                      .++ .|+|+||+++   ++++++.+...    ....+.+.+.++++++.++++..      .  .++..++++++.+++.
T Consensus       248 ~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~  327 (397)
T 3fsl_A          248 IFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELV  327 (397)
T ss_dssp             TTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999 6999999975   45655433221    12234455777777777766531      1  1345566666777777


Q ss_pred             HHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHH
Q 011777          386 GRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADF  465 (477)
Q Consensus       386 ~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~  465 (477)
                      +.|+++....+.....+..|+++++.+.            ...+.+.|.++||.+.+++      ||+++ .+++++|++
T Consensus       328 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gi~v~~g~------Ris~~-~~~~~~i~~  388 (397)
T 3fsl_A          328 KVLSTEMPERNFDYLLNQRGMFSYTGLS------------AAQVDRLREEFGVYLIASG------RMCVA-GLNTANVQR  388 (397)
T ss_dssp             HHHHHHCTTSCCTHHHHCCSSEEECCCC------------HHHHHHHHHTTCEECCTTC------EEEGG-GCCTTTHHH
T ss_pred             HHHHhcCCCCCceeecCCceEEEecCCC------------HHHHHHHHHhCCEEECCCC------eEEEE-ecCHhhHHH
Confidence            7776652111222222334666665441            2346677888999999864      88774 447788999


Q ss_pred             HHHHHHHHH
Q 011777          466 LVDALDYSM  474 (477)
Q Consensus       466 ~l~~l~~~l  474 (477)
                      ++++|++++
T Consensus       389 ~~~~l~~~l  397 (397)
T 3fsl_A          389 VAKAFAAVM  397 (397)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhhC
Confidence            999998764

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.95  E-value=3.9e-27  Score=235.77  Aligned_cols=320  Identities=13%  Similarity=0.074  Sum_probs=209.7

Q ss_pred             CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCC--CEEEEeCChHHHHHHHHHHHHhccCCceEEEEccC
Q 011777          113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNL--KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNA  190 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~--~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~  190 (477)
                      .+|+|++++.+++..  +... ...+...+++++++++++.+.  +.+++++||++|++.+++.+.  .++++||+.+++
T Consensus        30 ~~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~--~~gd~vi~~~~~  104 (376)
T 3f0h_A           30 SSEEVRAIGAEQVPY--FRTT-EFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF--TKKDKVLVIDGG  104 (376)
T ss_dssp             CCHHHHHHHTSCCCC--CSSH-HHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC--CTTCCEEEEESS
T ss_pred             CcHHHHHHhcCCCCC--CCCH-HHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc--CCCCeEEEEeCC
Confidence            478899988775532  2211 123556788999999876543  456669999999999998774  367889999998


Q ss_pred             ccCCccccccc-ccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeC
Q 011777          191 YHGGSSGTIGL-TALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVEL  269 (477)
Q Consensus       191 yhG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~  269 (477)
                      ||+........ .+.          .+..++.+.  ...++      +++++++++    .++++|+++++++++|.+.+
T Consensus       105 ~~~~~~~~~~~~~g~----------~~~~v~~~~--~~~~d------~~~l~~~~~----~~~~~v~~~~~~nptG~~~~  162 (376)
T 3f0h_A          105 SFGHRFVQLCEIHEI----------PYVALKLEH--GKKLT------KEKLYEYDN----QNFTGLLVNVDETSTAVLYD  162 (376)
T ss_dssp             HHHHHHHHHHHHTTC----------CEEEEECCT--TCCCC------HHHHHTTTT----SCCCEEEEESEETTTTEECC
T ss_pred             hhhHHHHHHHHHcCC----------ceEEEeCCC--CCCCC------HHHHHHhhc----cCceEEEEecccCCcceecC
Confidence            98854221111 110          122222221  11122      467776553    46788999988889998776


Q ss_pred             CchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhccccc--
Q 011777          270 APGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQ--  347 (477)
Q Consensus       270 ~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~--  347 (477)
                          +++|.++|++||+++|+||+|+++++    .+.++.+++...+.+++|+++++.++|++++++++++.+.....  
T Consensus       163 ----l~~i~~l~~~~~~~li~D~~~~~~~~----~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~  234 (376)
T 3f0h_A          163 ----TMMIGEFCKKNNMFFVCDCVSAFLAD----PFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRT  234 (376)
T ss_dssp             ----HHHHHHHHHHTTCEEEEECTTTTTTS----CCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCC
T ss_pred             ----HHHHHHHHHHcCCEEEEEcCccccCc----cccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCc
Confidence                99999999999999999999986543    23345556655566778999977778999999999887764211  


Q ss_pred             ---------------ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee-eccceeEEEE
Q 011777          348 ---------------FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV-RGRGLMVGME  411 (477)
Q Consensus       348 ---------------~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g~g~~~~i~  411 (477)
                                     ...++.+..+++++.++++.+.+++..+++.+....+++.+.+...+.+..... ...+.++.+.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~  314 (376)
T 3f0h_A          235 MYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVH  314 (376)
T ss_dssp             STTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEE
T ss_pred             eeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEe
Confidence                           123344555667777888876554333444444444444444443333321111 1122232222


Q ss_pred             EeeCCCCCCccHHHHHHHHHHHHHc-CceeeccC--CCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          412 LVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGG--LHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .  +.       ....++.+.|+++ ||.+.++.  ..++++||+++..+|++|+++++++|++++++
T Consensus       315 ~--~~-------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~  373 (376)
T 3f0h_A          315 P--TT-------ANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR  373 (376)
T ss_dssp             E--SS-------SCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred             C--CC-------CCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            2  10       1245788889988 99998763  23578999999999999999999999998864

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.95  E-value=3.8e-27  Score=236.19  Aligned_cols=317  Identities=19%  Similarity=0.160  Sum_probs=219.8

Q ss_pred             CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCC--CEEEEeCChHHHHHHHHHHHHhccCCceEEEEccC
Q 011777          113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNL--KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNA  190 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~--~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~  190 (477)
                      .+|+|++++.+++..  + ......+...+++++++++++.+.  ++++|++||++|++ +++.+  ..++++|++.+++
T Consensus        13 ~~~~v~~a~~~~~~~--~-~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~--~~~gd~vi~~~~~   86 (384)
T 3zrp_A           13 IKEDVLVAGLENNVG--F-TSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSL--LKPNDKILVVSNG   86 (384)
T ss_dssp             CCHHHHHHTTCCSCC--T-TSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGG--CCTTCEEEEECSS
T ss_pred             CCHHHHHHhhccccc--c-ccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhh--cCCCCEEEEecCC
Confidence            578999988776532  1 111224567889999999987766  78999999999999 88754  3567889999999


Q ss_pred             ccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCC
Q 011777          191 YHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELA  270 (477)
Q Consensus       191 yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~  270 (477)
                      ||+.....+...           .|...+.++......++      ++++++.++.   .++++|+++++++++|.+.+ 
T Consensus        87 ~~~~~~~~~~~~-----------~g~~~~~v~~~~~~~~d------~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~-  145 (384)
T 3zrp_A           87 VFGDRWEQIFKR-----------YPVNVKVLRPSPGDYVK------PGEVEEEVRK---SEYKLVALTHVETSTGVREP-  145 (384)
T ss_dssp             HHHHHHHHHHTT-----------SSCEEEEECCSTTCCCC------HHHHHHHHHH---SCEEEEEEESEETTTTEECC-
T ss_pred             cchHHHHHHHHH-----------cCCcEEEecCCCCCCCC------HHHHHHHHHh---CCCcEEEEeCCCCCCceECc-
Confidence            998532221110           12222222222221222      5888888872   35889999999999998776 


Q ss_pred             chhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccCccceEEEEeCHHHHHhh-cc---
Q 011777          271 PGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGLPLGAVVTTPEIANVM-AQ---  344 (477)
Q Consensus       271 ~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pig~v~~~~~~~~~~-~~---  344 (477)
                         +++|.++|++||+++|+||+|+ ++.   ..+..+.+  .+|+++  ++|+++++.++|++++++++++.+ ..   
T Consensus       146 ---l~~i~~l~~~~~~~li~D~a~~-~~~---~~~~~~~~--~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~  216 (384)
T 3zrp_A          146 ---VKDVINKIRKYVELIVVDGVSS-VGA---EEVKAEEW--NVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSI  216 (384)
T ss_dssp             ---HHHHHHHHGGGEEEEEEECTTT-TTT---SCCCTTTT--TCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCS
T ss_pred             ---HHHHHHHHHhcCCEEEEECccc-ccC---cccccccc--CCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCC
Confidence               9999999999999999999987 322   11222222  356665  559998878899999999988776 11   


Q ss_pred             ---------cc---------cccCC-CCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCceee-
Q 011777          345 ---------KI---------QFNTF-GGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIGDV-  401 (477)
Q Consensus       345 ---------~~---------~~~t~-~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-  401 (477)
                               ..         ....+ +.|...+++..++++.+.+   +++.++++++.+++.+.|+++  ........ 
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~  294 (384)
T 3zrp_A          217 AGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL--GLEIVARRP  294 (384)
T ss_dssp             CCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSCSSG
T ss_pred             CcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC--CCeEccCcc
Confidence                     00         22223 4567777777788877654   356777888888888888775  23222211 


Q ss_pred             -eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          402 -RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-HGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       402 -~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                       ...+.++++.+..         ....++.+.|.++||.+.++.. ..+++||+++..++++|+++++++|++++++
T Consensus       295 ~~~~~~~~~~~~~~---------~~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~  362 (384)
T 3zrp_A          295 ESYSNTVTGVILKV---------ADPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRK  362 (384)
T ss_dssp             GGBCSSEEEEECSS---------SCHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cccCccEEEEECCC---------CCHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHH
Confidence             1235666666532         1246788999999999987641 1278999999999999999999999998864

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.95  E-value=1e-26  Score=235.49  Aligned_cols=319  Identities=14%  Similarity=0.133  Sum_probs=218.6

Q ss_pred             CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCE-EEEeCChHHHHHHHHHHHHhccCCceEEEEccCc
Q 011777          113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKV-VYFVNSGTEANELAMLMARLSTGNLGMIALRNAY  191 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~-v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~y  191 (477)
                      .+|+|.+++.+++.  .+... ...+...+++++++++++.+.+. +++++||++|++.+++.+  ..++++|++.+++|
T Consensus        24 ~~~~v~~a~~~~~~--~~~~~-~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~--~~~gd~Vl~~~~~~   98 (411)
T 3nnk_A           24 ADPRVLRAMSSQLI--GQYDP-AMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSA--IRPGDKVLVPVFGR   98 (411)
T ss_dssp             CCHHHHHHHTSCCC--CTTCH-HHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEEECSH
T ss_pred             CCHHHHHHhhcccc--ccccH-HHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHh--cCCCCEEEEecCCc
Confidence            57889988876531  12111 12355688999999988765554 889999999999999977  34778999999999


Q ss_pred             cCCc--ccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeC
Q 011777          192 HGGS--SGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVEL  269 (477)
Q Consensus       192 hG~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~  269 (477)
                      |+..  ......             |...+.+|......++      +++++++++.   .++++|+++++++++|.+.+
T Consensus        99 ~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~d------~~~l~~~i~~---~~~~~v~~~~~~nptG~~~~  156 (411)
T 3nnk_A           99 FGHLLCEIARRC-------------RAEVHTIEVPWGEVFT------PDQVEDAVKR---IRPRLLLTVQGDTSTTMLQP  156 (411)
T ss_dssp             HHHHHHHHHHHT-------------TCEEEEEECCTTCCCC------HHHHHHHHHH---HCCSEEEEESEETTTTEECC
T ss_pred             hHHHHHHHHHHc-------------CCeEEEEecCCCCCCC------HHHHHHHHhh---CCCeEEEEeCCCCCcceecc
Confidence            9842  211111             2222222221111222      5888888862   26788999998999998776


Q ss_pred             CchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccc---
Q 011777          270 APGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKI---  346 (477)
Q Consensus       270 ~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~---  346 (477)
                          +++|.++|++||+++|+||+|+ ++.   ..+..+.+++...+.+++|+++++.++|++++++++++.+....   
T Consensus       157 ----l~~i~~l~~~~~~~li~Dea~~-~~~---~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~  228 (411)
T 3nnk_A          157 ----LAELGEICRRYDALFYTDATAS-LGG---NPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVE  228 (411)
T ss_dssp             ----CTTHHHHHHHHTCEEEEECTTT-BTT---BCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCC
T ss_pred             ----HHHHHHHHHHcCCEEEEECCcc-cCC---cccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhccccc
Confidence                8899999999999999999986 322   22333444443344456799888788999999999988775432   


Q ss_pred             ---------------------------------cccCCCCcHHHHHHHHHHHHhhchh---hHHHHHHHHHHHHHHHHHH
Q 011777          347 ---------------------------------QFNTFGGNPVCSAGGLAVLRVIDKE---RRQAHCADVGSHLLGRLRT  390 (477)
Q Consensus       347 ---------------------------------~~~t~~~~~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~  390 (477)
                                                       ....++.|..+++++.++++.+.++   +..++++++.+++.+.|++
T Consensus       229 ~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~  308 (411)
T 3nnk_A          229 EGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQA  308 (411)
T ss_dssp             GGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence                                             0122345788888888888876553   5677788888888888877


Q ss_pred             HHHhCCCcee-eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccC--CCCCEEEEeC-CCCCcHHHHHH
Q 011777          391 LQERHDIIGD-VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGG--LHGNVFRIKP-PMCFTKDDADF  465 (477)
Q Consensus       391 l~~~~~~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--~~~~~iRi~p-~~~~t~e~i~~  465 (477)
                      +  ....... ....+.++++.+...        ....++.+.|+++ ||.+.++.  ..++++||++ +...+++|+++
T Consensus       309 ~--g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~  378 (411)
T 3nnk_A          309 M--GLETFGDLKHKMNNVLGVVIPQG--------INGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMT  378 (411)
T ss_dssp             T--TCCBCSCGGGBCSSEEEEECCTT--------CCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHH
T ss_pred             c--CCEeCCCcccccccEEEEECCCC--------CCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHH
Confidence            5  2222211 112356666665211        1245788888876 99998762  2357999998 77889999999


Q ss_pred             HHHHHHHHHhh
Q 011777          466 LVDALDYSMSK  476 (477)
Q Consensus       466 ~l~~l~~~l~~  476 (477)
                      ++++|++++++
T Consensus       379 ~~~~l~~~l~~  389 (411)
T 3nnk_A          379 TLSALEAVLNY  389 (411)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999864

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.95  E-value=6.6e-26  Score=229.35  Aligned_cols=327  Identities=15%  Similarity=0.094  Sum_probs=220.0

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-cccccc-----CChHHHHHHHHHHhhCCCCCCEEEEeCChHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-HATTIY-----LHHAIADFAEALASKMPGNLKVVYFVNSGTEA  167 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-~~~~~~-----~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA  167 (477)
                      ++..|||+.++.      +.+|+|.+++.+++.... +....|     ..+...+++++++++++.+.+.|+|++||+++
T Consensus        25 ~~~~~ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a   98 (406)
T 3cai_A           25 DGWVHFDAPAGM------LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVL   98 (406)
T ss_dssp             SSCEECBGGGCC------CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHH
T ss_pred             CCeEEEeCCCcC------CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHH
Confidence            357899976643      478999999999987632 111112     24567889999999987766789999999999


Q ss_pred             HHHHHHHHH-hccCCceEEEEccCccCCccccccc---ccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHH
Q 011777          168 NELAMLMAR-LSTGNLGMIALRNAYHGGSSGTIGL---TALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDH  243 (477)
Q Consensus       168 ~~~Al~~ar-~~~~~~~ii~~~~~yhG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~  243 (477)
                      ++.+++... ...+++.|++..++|++........   .+.          .+..++.. +.....+      +++|++.
T Consensus        99 l~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~----------~v~~v~~~-~~~~~~d------~~~l~~~  161 (406)
T 3cai_A           99 LSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGA----------KVKWAEVD-IETGELP------TWQWESL  161 (406)
T ss_dssp             HHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBC----------EEEEECCC-TTTCCCC------GGGHHHH
T ss_pred             HHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCC----------eEEEEecC-cccCCcC------HHHHHHH
Confidence            999988542 2346678999999998765433321   111          11222211 0111111      4677777


Q ss_pred             HhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eecc
Q 011777          244 IDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAK  321 (477)
Q Consensus       244 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK  321 (477)
                      ++    +++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ +|..   .+....++  +|++  +++|
T Consensus       162 l~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~---~~~~~~~~--~d~~~~s~~K  227 (406)
T 3cai_A          162 IS----KSTRLVAVNSASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYR---LLDIRETD--ADVVTVNAHA  227 (406)
T ss_dssp             CC----TTEEEEEEESBCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTC---CCCHHHHC--CSEEEEEGGG
T ss_pred             hC----CCceEEEEeCCcCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC---CCCchhcC--CCEEEeehhh
Confidence            75    46889999999999998776    8999999999999999999997 3321   22333334  5665  5679


Q ss_pred             cccCccceE-EEEeCHHHHHhhccccc---------ccCCCCcHHHHHHHHHHHHhhch-----------------hhHH
Q 011777          322 GIGNGLPLG-AVVTTPEIANVMAQKIQ---------FNTFGGNPVCSAGGLAVLRVIDK-----------------ERRQ  374 (477)
Q Consensus       322 ~lg~G~pig-~v~~~~~~~~~~~~~~~---------~~t~~~~~~~~aaa~a~l~~l~~-----------------~~~~  374 (477)
                      .+|++  +| ++++++++++.+....+         ....+.|+.+++++.++++.+.+                 ++..
T Consensus       228 ~~g~~--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~  305 (406)
T 3cai_A          228 WGGPP--IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSAD  305 (406)
T ss_dssp             GTSCS--CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHH
T ss_pred             hcCCC--cCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHH
Confidence            77643  89 99999999887765432         11334577887777788877653                 2344


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceeee---ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-------
Q 011777          375 AHCADVGSHLLGRLRTLQERHDIIGDVR---GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-------  444 (477)
Q Consensus       375 ~~~~~~~~~l~~~L~~l~~~~~~~~~v~---g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------  444 (477)
                      ++.+++.+++.+.|++    .+.+....   ..+.++++.+..         ....++.+.|.++||.+.++.       
T Consensus       306 ~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~L~~~gi~v~~g~~~~~~~~  372 (406)
T 3cai_A          306 AYLNRVFDYLMVSLRS----LPLVMLIGRPEAQIPVVSFAVHK---------VPADRVVQRLADNGILAIANTGSRVLDV  372 (406)
T ss_dssp             HHHHHHHHHHHHHHHT----CTTEEECCCCSSBCSEEEEEETT---------BCHHHHHHHHHHTTEECEECCSCHHHHH
T ss_pred             HHHHHHHHHHHHHHhc----CCCeEEcCCccccCCEEEEEECC---------cCHHHHHHHHHHCCcEEecCChHHHHHH
Confidence            5555555666555544    32221111   134466776521         014568888889999998763       


Q ss_pred             ----CCCCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777          445 ----LHGNVFRIKPPMCFTKDDADFLVDALDY  472 (477)
Q Consensus       445 ----~~~~~iRi~p~~~~t~e~i~~~l~~l~~  472 (477)
                          ...+++||+++..++++|+++++++|++
T Consensus       373 ~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~  404 (406)
T 3cai_A          373 LGVNDVGGAVTVGLAHYSTMAEVDQLVRALAS  404 (406)
T ss_dssp             HTTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred             cCCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence                1247899999999999999999999875

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.95  E-value=2.1e-26  Score=231.81  Aligned_cols=331  Identities=14%  Similarity=0.046  Sum_probs=225.0

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLM  174 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~  174 (477)
                      ...|||..+.      ++.+|+|++++.+++..  +. .....+...+++++++++++.+.+++++|+||++|++.+++.
T Consensus         8 ~~~yl~~~~~------~~~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~   78 (392)
T 2z9v_A            8 DPVITLTAGP------VNAYPEVLRGLGRTVLY--DY-DPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAAS   78 (392)
T ss_dssp             CCSEECSSSC------CCCCHHHHHHTTSCCCC--TT-SHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHH
T ss_pred             CcceeecCCC------cCCCHHHHHHHhccccc--cc-cHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHH
Confidence            3468886532      36789999998876643  11 111234567899999999987667899999999999999997


Q ss_pred             HHhccCCceEEEEccCccCCccccc-ccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCee
Q 011777          175 ARLSTGNLGMIALRNAYHGGSSGTI-GLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA  253 (477)
Q Consensus       175 ar~~~~~~~ii~~~~~yhG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a  253 (477)
                      +  ..+++.|++.+++||+.....+ ...+.          .+..++...  ....+      ++++++.++.  .++++
T Consensus        79 ~--~~~gd~Vl~~~~~~~~~~~~~~~~~~g~----------~~~~v~~~~--~~~~d------~~~l~~~l~~--~~~~~  136 (392)
T 2z9v_A           79 L--ISPDDVVLNLASGVYGKGFGYWAKRYSP----------HLLEIEVPY--NEAID------PQAVADMLKA--HPEIT  136 (392)
T ss_dssp             H--CCTTCCEEEEESSHHHHHHHHHHHHHCS----------CEEEEECCT--TSCCC------HHHHHHHHHH--CTTCC
T ss_pred             h--cCCCCEEEEecCCcccHHHHHHHHHcCC----------ceEEeeCCC--CCCCC------HHHHHHHHhc--CCCCc
Confidence            6  3466789999999998631111 10111          122222211  11122      5788888853  13577


Q ss_pred             EEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccCccceEE
Q 011777          254 GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGLPLGA  331 (477)
Q Consensus       254 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pig~  331 (477)
                      +|+++++++++|.+.+    +++|.++|++||+++|+||+|+ +|..   .+....+  .+|+++  ++|+++++.++|+
T Consensus       137 ~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~---~~~~~~~--~~d~~~~s~sK~~~~~~g~G~  206 (392)
T 2z9v_A          137 VVSVCHHDTPSGTINP----IDAIGALVSAHGAYLIVDAVSS-FGGM---KTHPEDC--KADIYVTGPNKCLGAPPGLTM  206 (392)
T ss_dssp             EEEEESEEGGGTEECC----HHHHHHHHHHTTCEEEEECTTT-BTTB---SCCGGGG--TCSEEEECSSSTTCCCSCCEE
T ss_pred             EEEEeccCCCCceecc----HHHHHHHHHHcCCeEEEEcccc-cCCc---ccccccc--cceEEEecCcccccCCCceeE
Confidence            8889998888897776    8999999999999999999997 4322   2222323  356665  5799887667799


Q ss_pred             EEeCHHHHHhhcccc--------------------cccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHH
Q 011777          332 VVTTPEIANVMAQKI--------------------QFNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRL  388 (477)
Q Consensus       332 v~~~~~~~~~~~~~~--------------------~~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L  388 (477)
                      +++++++++.+....                    .....+.|+.+++++.++++.+.+   ++..++++++.+++++.|
T Consensus       207 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L  286 (392)
T 2z9v_A          207 MGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGV  286 (392)
T ss_dssp             EEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            999999887764310                    112334577777777788877654   346777888888888888


Q ss_pred             HHHHHhCCCce-ee-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccC--CCCCEEEEeCCC-CCcHHH
Q 011777          389 RTLQERHDIIG-DV-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGG--LHGNVFRIKPPM-CFTKDD  462 (477)
Q Consensus       389 ~~l~~~~~~~~-~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--~~~~~iRi~p~~-~~t~e~  462 (477)
                      +++  ...... .. ...+.++++.+...        ....++.+.|.++ ||.+.++.  ...+++||++.. .++++|
T Consensus       287 ~~~--g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~  356 (392)
T 2z9v_A          287 TAM--GLSVWAASDSIASPTTTAVRTPDG--------VDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIY  356 (392)
T ss_dssp             HHT--TCCBSSSSGGGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHH
T ss_pred             HHc--CCeeccCCccccCCceEEEECCCC--------CCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHH
Confidence            775  232221 10 11456667765211        1245688889887 99998864  235799998643 789999


Q ss_pred             HHHHHHHHHHHHhh
Q 011777          463 ADFLVDALDYSMSK  476 (477)
Q Consensus       463 i~~~l~~l~~~l~~  476 (477)
                      +++++++|++++++
T Consensus       357 i~~~~~~l~~~~~~  370 (392)
T 2z9v_A          357 AIAALTALGGAMNA  370 (392)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998865

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.95  E-value=1.4e-26  Score=229.90  Aligned_cols=329  Identities=12%  Similarity=0.039  Sum_probs=215.2

Q ss_pred             EEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHh
Q 011777           98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARL  177 (477)
Q Consensus        98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~  177 (477)
                      +++|.++.    .|+.+|+|.+++.+++..  +....+..+...+++++++++++.+.++++|++||++|++.+++.++.
T Consensus        15 ~i~l~~~~----~~~~~~~v~~a~~~~~~~--~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~~   88 (359)
T 1svv_A           15 PYSFVNDY----SVGMHPKILDLMARDNMT--QHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR   88 (359)
T ss_dssp             CEECSCSC----SSCCCHHHHHHHHHHTTC--CCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCC
T ss_pred             eEEecCCC----cCCCCHHHHHHHHHHHhh--ccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHhC
Confidence            56665533    468899999999998864  333345678899999999999877778999999999999999998754


Q ss_pred             ccCCceEEEEccCccCCccc-ccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc---CCCCee
Q 011777          178 STGNLGMIALRNAYHGGSSG-TIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG---TSGKVA  253 (477)
Q Consensus       178 ~~~~~~ii~~~~~yhG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~---~~~~~a  253 (477)
                        +++.|++.+++||+.... .....            |...+.+|.. ...+  |    +++|++.++..   +..+++
T Consensus        89 --~gd~vl~~~~~~~~~~~~~~~~~~------------g~~~~~v~~~-~~~~--d----~~~l~~~l~~~~~~~~~~~~  147 (359)
T 1svv_A           89 --PWEAVIATQLGHISTHETGAIEAT------------GHKVVTAPCP-DGKL--R----VADIESALHENRSEHMVIPK  147 (359)
T ss_dssp             --TTEEEEEETTSHHHHSSTTHHHHT------------TCCEEEECCT-TSCC--C----HHHHHHHHHHSCSTTSCEEE
T ss_pred             --CCCEEEEcccchHHHHHHHHHhcC------------CCeeEEEeCC-CCee--c----HHHHHHHHHHHHhccCCCce
Confidence              567899999999987653 11111            2222222221 1112  2    57888888632   122478


Q ss_pred             EEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCc--cCCCCCCccccccC--CCcceeee--cccccCcc
Q 011777          254 GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGF--GRTGSHYWGFETQG--VIPDIVTM--AKGIGNGL  327 (477)
Q Consensus       254 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gf--gr~G~~~~~~~~~g--v~pDivt~--sK~lg~G~  327 (477)
                      +|+++++ +++|.+ .+++++++|.++|++||+++|+||+|.+|  +..+ .  .....+  ..+|++++  +|. ++..
T Consensus       148 ~v~~~~~-~ptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~-~--~~~~~~~~~~~d~~~~s~~K~-g~~~  221 (359)
T 1svv_A          148 LVYISNT-TEVGTQ-YTKQELEDISASCKEHGLYLFLDGARLASALSSPV-N--DLTLADIARLTDMFYIGATKA-GGMF  221 (359)
T ss_dssp             EEEEESS-CTTSCC-CCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTT-C--CCCHHHHHHHCSEEEEECTTT-TCSS
T ss_pred             EEEEEcC-CCCcee-cCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCC-c--chhhhhhhhcCCEEEEecccC-CCCC
Confidence            8888887 467754 46799999999999999999999999766  4444 1  111111  24677654  574 3345


Q ss_pred             ceEEEEeCHHHHHhhcccc--cccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccc
Q 011777          328 PLGAVVTTPEIANVMAQKI--QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG  405 (477)
Q Consensus       328 pig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g  405 (477)
                      ++|++++++++++.+....  .+.+++.+....++..+.++...-++..++++++++++.+.| +.. ......  ...+
T Consensus       222 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~-~~~~~~--~~~~  297 (359)
T 1svv_A          222 GEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGL-EAC-GIRLAW--PSAS  297 (359)
T ss_dssp             CEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHH-HHT-TCCBSS--CCSS
T ss_pred             ceEEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh-ccC-CeEEcc--CCcc
Confidence            7799999998877665431  233333233333333333332111346677777888888877 431 222211  2234


Q ss_pred             eeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-Cceeecc-CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          406 LMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKG-GLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       406 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~-~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .++++.+.             .++.+.|+++ ||++.+. ....+++||++++.++++|+++++++|++++++
T Consensus       298 ~~~~~~~~-------------~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  357 (359)
T 1svv_A          298 NQLFPILE-------------NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAS  357 (359)
T ss_dssp             SEECBEEE-------------HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC---
T ss_pred             ceEEEEcC-------------HHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhc
Confidence            55555541             2678889888 9998432 112468999999999999999999999988765

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.95  E-value=2.8e-27  Score=240.17  Aligned_cols=343  Identities=11%  Similarity=0.029  Sum_probs=216.2

Q ss_pred             CCCEEEeecCCcccccCCC--CCHHHHHHHHH-HHhhcccccccc-CChHHHHHHHHHHhhCCC------CCCEEEE--e
Q 011777           94 NGRRYLDAFAGIVTVSCGH--CHPDVLNAIFE-QSKLLQHATTIY-LHHAIADFAEALASKMPG------NLKVVYF--V  161 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh--~~p~v~~Av~~-~l~~~~~~~~~~-~~~~~~~l~~~La~~~~~------~~~~v~~--~  161 (477)
                      +|+.++||..|.+..+-|+  .+|.|.+++.+ +++...  ...| ......++++.+++++..      +.++|++  |
T Consensus        27 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~--~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t  104 (412)
T 1yaa_A           27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSY--NHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQS  104 (412)
T ss_dssp             CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTC--CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred             CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCccc--ccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEec
Confidence            3566889888876444443  56899999988 775311  1112 222244555555555421      3468999  9


Q ss_pred             CChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHH
Q 011777          162 NSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQ  241 (477)
Q Consensus       162 ~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le  241 (477)
                      +||++|++.++++++...+++.|++.+++|+++.......+.           .+..++..+..  .+..|    +++++
T Consensus       105 ~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~~~~--~~~~d----~~~l~  167 (412)
T 1yaa_A          105 LSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGL-----------KTATYPYWANE--TKSLD----LNGFL  167 (412)
T ss_dssp             EHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTC-----------CEEEEECEETT--TTEEC----HHHHH
T ss_pred             cchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCc-----------eEEEEeeecCC--CCccC----HHHHH
Confidence            999999999987666555778899999999997654433221           11222210000  11112    57888


Q ss_pred             HHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCC--CCCccc-cccCCCc----
Q 011777          242 DHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTG--SHYWGF-ETQGVIP----  314 (477)
Q Consensus       242 ~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G--~~~~~~-~~~gv~p----  314 (477)
                      +.++.. +...+++++...++++| ..++.+.+++|.++|++||+++|+||+|.+|++.+  .....+ +..+..+    
T Consensus       168 ~~l~~~-~~~~~~~~~~~p~nPtG-~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (412)
T 1yaa_A          168 NAIQKA-PEGSIFVLHSCAHNPTG-LDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSP  245 (412)
T ss_dssp             HHHHHS-CTTCEEEEECSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCC
T ss_pred             HHHHhC-CCCCEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcc
Confidence            888632 12345555455566666 45688899999999999999999999999987654  012222 1111122    


Q ss_pred             --ceeeecccccC-ccceEEEE--e-----CHH----HHHhhcccccccCCCCcHHHHHHHHHHHHhhc--------hhh
Q 011777          315 --DIVTMAKGIGN-GLPLGAVV--T-----TPE----IANVMAQKIQFNTFGGNPVCSAGGLAVLRVID--------KER  372 (477)
Q Consensus       315 --Divt~sK~lg~-G~pig~v~--~-----~~~----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~--------~~~  372 (477)
                        .+.++||.++. |+|+||++  +     +++    +++.+.......+.+.|+++++++.++|+...        .++
T Consensus       246 ~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  325 (412)
T 1yaa_A          246 VFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVT  325 (412)
T ss_dssp             EEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             eEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence              24478999997 99999998  7     566    77766553333444568999999999887652        134


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEE
Q 011777          373 RQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRI  452 (477)
Q Consensus       373 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi  452 (477)
                      ..++++++.+++.+.|+++....+........|.++++.+        +    ...+.+.+.++||++.+      ++||
T Consensus       326 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~l~~~gi~v~~------~~Ri  387 (412)
T 1yaa_A          326 MSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL--------T----PQMVKRLEETHAVYLVA------SGRA  387 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC--------C----HHHHHHHHHHHCEECCT------TSEE
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCC--------C----HHHHHHHHHhCCEEecc------CcEE
Confidence            4556666666666666654210001111222344544322        1    23455555678999976      3699


Q ss_pred             eCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          453 KPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       453 ~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +++. ++++++++++++|+++++.
T Consensus       388 s~~~-~~~~~i~~~~~~l~~~~~~  410 (412)
T 1yaa_A          388 SIAG-LNQGNVEYVAKAIDEVVRF  410 (412)
T ss_dssp             EGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred             EEcc-CCHhHHHHHHHHHHHHHHh
Confidence            8774 5899999999999998864

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.95  E-value=1e-26  Score=229.45  Aligned_cols=309  Identities=16%  Similarity=0.124  Sum_probs=208.2

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCC---CCCCEEEEeCChHHHHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMP---GNLKVVYFVNSGTEANELAM  172 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~---~~~~~v~~~~sGseA~~~Al  172 (477)
                      .+++||.++..  +++ .+|++.+++.+++.+.  ....|......++++.|+++++   .+.++|++++||++|++.++
T Consensus        19 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~--~~~~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~   93 (335)
T 1uu1_A           19 RDKTYLALNEN--PFP-FPEDLVDEVFRRLNSD--ALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMM   93 (335)
T ss_dssp             CCSEEESSCCC--SSC-CCHHHHHHHHHTCCGG--GGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHH
T ss_pred             CcceECCCCCC--CCC-CCHHHHHHHHHHhhhh--hhhcCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHH
Confidence            46889887764  455 6899999999887321  1122333346778888888876   56678999999999999999


Q ss_pred             HHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCe
Q 011777          173 LMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKV  252 (477)
Q Consensus       173 ~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~  252 (477)
                      +.+     ++.|++. ++||++.......+             ...+.+|...  .+..|    ++++         +++
T Consensus        94 ~~~-----gd~Vl~~-p~y~~~~~~~~~~g-------------~~~~~v~~~~--~~~~d----~~~l---------~~~  139 (335)
T 1uu1_A           94 LMF-----DRSVFFP-PTYSCYRIFAKAVG-------------AKFLEVPLTK--DLRIP----EVNV---------GEG  139 (335)
T ss_dssp             HHS-----SEEEECS-SSCHHHHHHHHHHT-------------CEEEECCCCT--TSCCC----CCCC---------CTT
T ss_pred             HHh-----CCcEEEC-CCcHHHHHHHHHcC-------------CeEEEeccCC--CCCCC----HHHc---------CCC
Confidence            865     4778888 99999765443322             1122222110  11111    1222         245


Q ss_pred             eEEE-ecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc-ccccCCCcceeeeccccc-Cccce
Q 011777          253 AGFI-AETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG-FETQGVIPDIVTMAKGIG-NGLPL  329 (477)
Q Consensus       253 a~vi-~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~-~~~~gv~pDivt~sK~lg-~G~pi  329 (477)
                      ++|+ ++| ++++|.+. +.+.+++|.++|   | ++|+||+|++|+..  .+.. .+..+....+.++||.+| +|+|+
T Consensus       140 ~~v~l~~p-~nptG~~~-~~~~l~~l~~~~---~-~li~De~~~~~~~~--~~~~~~~~~~~~i~~~s~sK~~g~~G~r~  211 (335)
T 1uu1_A          140 DVVFIPNP-NNPTGHVF-EREEIERILKTG---A-FVALDEAYYEFHGE--SYVDFLKKYENLAVIRTFSKAFSLAAQRV  211 (335)
T ss_dssp             EEEEEESS-CTTTCCCC-CHHHHHHHHHTT---C-EEEEECTTHHHHCC--CCGGGGGTCSSEEEEEESTTTTTCGGGCC
T ss_pred             CEEEEeCC-CCCCCCCC-CHHHHHHHHHhC---C-EEEEECcchhhcch--hHHHHhhhCCCEEEEecchhhcCCcccCe
Confidence            5565 666 66777554 555555555544   8 89999999987542  2222 233344456678999999 79999


Q ss_pred             EEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc-hhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeE
Q 011777          330 GAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID-KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMV  408 (477)
Q Consensus       330 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~-~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~  408 (477)
                      ||+++++++++.+....  .+|+.|+++++++.++|+..+ .++..++++++.+++.+.|+++    +. ...++.|.++
T Consensus       212 G~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~-~~~~~~~~~~  284 (335)
T 1uu1_A          212 GYVVASEKFIDAYNRVR--LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM----GY-RITDSRGNFV  284 (335)
T ss_dssp             EEEEECHHHHHHHHHHS--CTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH----TC-CBCCCCSSEE
T ss_pred             EEEEeCHHHHHHHHHhc--CCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----Cc-EEcCCCCeEE
Confidence            99999999988876533  457889999999999998632 2345666777777777777664    22 1234457777


Q ss_pred             EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          409 GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       409 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      ++.+.        . ....++.+.|.++||.+.+.   .+++||++.   +++|+++++++|+++
T Consensus       285 ~~~~~--------~-~~~~~~~~~l~~~gi~v~~~---~~~iRis~~---~~~~i~~~~~~l~~~  334 (335)
T 1uu1_A          285 FVFME--------K-EEKERLLEHLRTKNVAVRSF---REGVRITIG---KREENDMILRELEVF  334 (335)
T ss_dssp             EEECC--------T-HHHHHHHHHHHHHTEEEEEE---TTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred             EEECC--------C-CCHHHHHHHHHHCCEEEEEC---CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence            77652        1 23557888899999999883   578999864   468899999998764

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.95  E-value=1.9e-26  Score=232.11  Aligned_cols=332  Identities=13%  Similarity=0.062  Sum_probs=221.0

Q ss_pred             CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCC-EEEEeCChHHHHHHH
Q 011777           93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLK-VVYFVNSGTEANELA  171 (477)
Q Consensus        93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~-~v~~~~sGseA~~~A  171 (477)
                      .+|+.|+|..+..      ..+|+|++++.+++..  +. ..+..+...+++++++++++.+.+ ++++++||++|++.+
T Consensus        16 ~~~~~~~~~~g~~------~~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~   86 (393)
T 2huf_A           16 VTPNKLLMGPGPS------NAPQRVLDAMSRPILG--HL-HPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEAT   86 (393)
T ss_dssp             CCCCCEECSSSCC------CCCHHHHHHTTSCCCC--TT-SHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHH
T ss_pred             CCCCeEEecCCCC------CCCHHHHHHHHhhhcc--CC-CHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHH
Confidence            4667777755432      2689999998776543  11 112345678999999999877654 899999999999999


Q ss_pred             HHHHHhccCCceEEEEccCccCCccccc-ccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCC
Q 011777          172 MLMARLSTGNLGMIALRNAYHGGSSGTI-GLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG  250 (477)
Q Consensus       172 l~~ar~~~~~~~ii~~~~~yhG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~  250 (477)
                      ++.+.  .++++|++.+++||+...... ...+.          .+..++..  .....+      ++++++.++.   .
T Consensus        87 ~~~~~--~~gd~vl~~~~~~~~~~~~~~~~~~g~----------~~~~v~~~--~~~~~d------~~~l~~~i~~---~  143 (393)
T 2huf_A           87 LCNLL--EDGDVILIGHTGHWGDRSADMATRYGA----------DVRVVKSK--VGQSLS------LDEIRDALLI---H  143 (393)
T ss_dssp             HHHHC--CTTCEEEEEESSHHHHHHHHHHHHTTC----------EEEEEECC--TTCCCC------HHHHHHHHHH---H
T ss_pred             HHHHh--CCCCEEEEECCCcchHHHHHHHHHcCC----------eeEEEeCC--CCCCCC------HHHHHHHHhc---c
Confidence            99773  356789999999998421111 00110          12222221  111122      5788888862   1


Q ss_pred             CeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccCccc
Q 011777          251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGLP  328 (477)
Q Consensus       251 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~p  328 (477)
                      ++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ +|..   .+.+..  ..+|+++  ++|+++++.+
T Consensus       144 ~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~~~---~~~~~~--~~~d~~~~s~sK~l~g~~G  213 (393)
T 2huf_A          144 KPSVLFLTQGDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LGGA---PMFMDR--WEIDAMYTGSQKVLGAPPG  213 (393)
T ss_dssp             CCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB---CCCTTT--TTCSEEECCSSSTTCCCSS
T ss_pred             CCcEEEEEccCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC---Ccchhh--cCccEEEECCCcccccCCC
Confidence            5678888888888897776    7899999999999999999986 5432   222222  2367765  5699876555


Q ss_pred             eEEEEeCHHHHHhhcccc----------------------cccC-CCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHH
Q 011777          329 LGAVVTTPEIANVMAQKI----------------------QFNT-FGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGS  382 (477)
Q Consensus       329 ig~v~~~~~~~~~~~~~~----------------------~~~t-~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~  382 (477)
                      +|++++++++++.+....                      ...+ .+.|..+++++.++++.+.+   ++..++++++.+
T Consensus       214 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~  293 (393)
T 2huf_A          214 ITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAK  293 (393)
T ss_dssp             CEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             eEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            699999999988775430                      0111 23466777777778877643   346677788888


Q ss_pred             HHHHHHHHHHHhCCCceeee-ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccCC--CCCEEEEeC-CCC
Q 011777          383 HLLGRLRTLQERHDIIGDVR-GRGLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGGL--HGNVFRIKP-PMC  457 (477)
Q Consensus       383 ~l~~~L~~l~~~~~~~~~v~-g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--~~~~iRi~p-~~~  457 (477)
                      ++.+.|+++  ......... ..+.++++.+...        ....++.+.|+++ ||.+.++..  ..+++||++ +..
T Consensus       294 ~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~  363 (393)
T 2huf_A          294 RLYRGLQDA--GFELYADPKDRLSTVTTIKVPQG--------VDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQN  363 (393)
T ss_dssp             HHHHHHHHT--TCCBSSCGGGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGG
T ss_pred             HHHHHHHHc--CCeeccCccccCCcEEEEEcCCC--------CCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCc
Confidence            888888775  232222111 1244666665211        1145678888765 999987642  357999998 556


Q ss_pred             CcHHHHHHHHHHHHHHHhh
Q 011777          458 FTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       458 ~t~e~i~~~l~~l~~~l~~  476 (477)
                      .+++++++++++|++++++
T Consensus       364 ~~~e~i~~~~~~l~~~~~~  382 (393)
T 2huf_A          364 ATTERVDRVLQVFQEAVAA  382 (393)
T ss_dssp             CSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence            7899999999999998764

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.94  E-value=4.6e-26  Score=235.04  Aligned_cols=355  Identities=16%  Similarity=0.157  Sum_probs=213.3

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAML  173 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~  173 (477)
                      .|+.||||.+++++       ++|.+++.+++.....  .....+...+|+++|+++++.  ++++||+||++|+++|++
T Consensus        41 ~g~~ylD~~~~~~~-------~~v~~a~~~~~~~~~~--~y~~~~~~~~l~~~la~~~~~--~~v~~t~ggt~A~~~al~  109 (467)
T 1ax4_A           41 SSAVYIDLLTDSGT-------NAMSDHQWAAMITGDE--AYAGSRNYYDLKDKAKELFNY--DYIIPAHQGRGAENILFP  109 (467)
T ss_dssp             GGGCSEECSCSSSC-------CCEEHHHHHHHHTCCC--CSSSCHHHHHHHHHHHHHHCC--CEEEEESSHHHHHHHHHH
T ss_pred             CCceeeecccCcCC-------HHHHHHHHHHHhhccc--ccccCccHHHHHHHHHHHcCC--CcEEEcCCcHHHHHHHHH
Confidence            47789999887753       7788888887654321  112356678999999999854  789999999999999999


Q ss_pred             HHHhc---cCCce--EEEEccCcc-CCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc
Q 011777          174 MARLS---TGNLG--MIALRNAYH-GGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG  247 (477)
Q Consensus       174 ~ar~~---~~~~~--ii~~~~~yh-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~  247 (477)
                      +++.+   +|+.+  ||+.  .+| +.+...+...+.........  .........++....  |    +++|+++++..
T Consensus       110 ~~~~~~~~~Gd~~~~viv~--~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~--d----~~~le~~i~~~  179 (467)
T 1ax4_A          110 VLLKYKQKEGKAKNPVFIS--NFHFDTTAAHVELNGCKAINIVTE--KAFDSETYDDWKGDF--D----IKKLKENIAQH  179 (467)
T ss_dssp             HHHHHHHHTTCCSSCEEEE--SSCCHHHHHHHHHTTCEEEECBCG--GGGCTTSCCTTTTCB--C----HHHHHHHHHHH
T ss_pred             HHHHhhccCCCccceEEEe--ccccchhhHHHhccCCceeccccc--ccccccccCCccccc--C----HHHHHHHHHhc
Confidence            88763   44431  5555  444 44333333322111100000  000000000111111  2    58888888732


Q ss_pred             CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccC---c-------cCCCCCCcccc-ccCCCcce
Q 011777          248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG---F-------GRTGSHYWGFE-TQGVIPDI  316 (477)
Q Consensus       248 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g---f-------gr~G~~~~~~~-~~gv~pDi  316 (477)
                      ..+++++|++++++|++|..+++.+++++|+++|++||++||+||++..   +       ++.|.....+. .....+|+
T Consensus       180 ~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  259 (467)
T 1ax4_A          180 GADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADA  259 (467)
T ss_dssp             CGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSE
T ss_pred             CCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccce
Confidence            2236899999999988855788899999999999999999999998752   0       22221000000 00012466


Q ss_pred             e--eecccccCccceE-EEEeC-H-HHHHhhcccc----cccCCCCcHHHHHH-HHHHHHhhchhhHHHHHHHHHHHHHH
Q 011777          317 V--TMAKGIGNGLPLG-AVVTT-P-EIANVMAQKI----QFNTFGGNPVCSAG-GLAVLRVIDKERRQAHCADVGSHLLG  386 (477)
Q Consensus       317 v--t~sK~lg~G~pig-~v~~~-~-~~~~~~~~~~----~~~t~~~~~~~~aa-a~a~l~~l~~~~~~~~~~~~~~~l~~  386 (477)
                      +  +++|+++  +|+| +++++ + ++++.+....    ...++++++..+.+ ..++++.+.+++..++..++++++++
T Consensus       260 ~~~s~sK~~g--~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~  337 (467)
T 1ax4_A          260 LTMSAKKDPL--LNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGD  337 (467)
T ss_dssp             EEEETTSTTC--CSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEeccccCC--CCcceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            5  4567664  5654 55566 6 7777654321    12345554444333 33356655444455666677788888


Q ss_pred             HHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCc-cHHHHHHHHHHH-HHcCceeeccCC---------------CCCE
Q 011777          387 RLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTP-AKAETAVLFEKL-RELGVLVGKGGL---------------HGNV  449 (477)
Q Consensus       387 ~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~-~~~~~~~~~~~l-~~~Gv~v~~~~~---------------~~~~  449 (477)
                      .|++.  ..+.+.  +..|.++++.+..- ....+ ......++.+.| .++||.+.+++.               ..++
T Consensus       338 ~L~~~--~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~  412 (467)
T 1ax4_A          338 RLREA--GIPIQY--PTGGHAVFVDCKKL-VPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEF  412 (467)
T ss_dssp             HHHHT--TCCBCS--SCCSSEEEEESTTT-CTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCE
T ss_pred             HHHhC--CCCccc--CCCceEEEEehhhh-ccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccce
Confidence            88762  333322  23355666652100 00001 111345788888 889999987211               1279


Q ss_pred             EEEeCC-CCCcHHHHHHHHHHHHHHHhh
Q 011777          450 FRIKPP-MCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       450 iRi~p~-~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +||+++ ..+|++|+++++++|++++++
T Consensus       413 iRls~~~~~~t~e~i~~~~~~l~~~~~~  440 (467)
T 1ax4_A          413 MRLTIARRVYTNDHMDYIADALIGLKEK  440 (467)
T ss_dssp             EEEECCTTSSCHHHHHHHHHHHHTTHHH
T ss_pred             EEEecccccCCHHHHHHHHHHHHHHHHh
Confidence            999999 558999999999999887653

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.94  E-value=6.5e-26  Score=229.90  Aligned_cols=324  Identities=12%  Similarity=0.083  Sum_probs=214.3

Q ss_pred             CCCCCHHHHHHHHHHHhhcccc-ccccCChHHHHHHHHHHhhCCCCCCEEE-EeCChHHHHHHHHHHHHhccCCceEEEE
Q 011777          110 CGHCHPDVLNAIFEQSKLLQHA-TTIYLHHAIADFAEALASKMPGNLKVVY-FVNSGTEANELAMLMARLSTGNLGMIAL  187 (477)
Q Consensus       110 lGh~~p~v~~Av~~~l~~~~~~-~~~~~~~~~~~l~~~La~~~~~~~~~v~-~~~sGseA~~~Al~~ar~~~~~~~ii~~  187 (477)
                      +++.++.+.+++.+++.+.... ......+...+++++|+++++.+.+.++ +++||++|++.+++..  ..++++|++.
T Consensus        15 ~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l--~~~gd~Vl~~   92 (416)
T 3isl_A           15 MTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASV--IEPEDDVLIP   92 (416)
T ss_dssp             CSSSSCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEE
T ss_pred             ecCCCcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHh--cCCCCEEEEe
Confidence            4444444444454544432111 1111245578999999999987666655 9999999999999866  4577899999


Q ss_pred             ccCccCCccc-ccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCe
Q 011777          188 RNAYHGGSSG-TIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGA  266 (477)
Q Consensus       188 ~~~yhG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~  266 (477)
                      +++||+.... .....            |...+.++......++      +++++++++.   +++++|+++++++++|.
T Consensus        93 ~~~~~~~~~~~~~~~~------------g~~~~~v~~~~~~~~d------~~~l~~~i~~---~~~~~v~~~~~~nptG~  151 (416)
T 3isl_A           93 IYGRFGYLLTEIAERY------------GANVHMLECEWGTVFD------PEDIIREIKK---VKPKIVAMVHGETSTGR  151 (416)
T ss_dssp             ESSHHHHHHHHHHHHT------------TCEEEEEECCTTCCCC------HHHHHHHHHH---HCCSEEEEESEETTTTE
T ss_pred             cCCcccHHHHHHHHhc------------CCeeEEEecCCCCCCC------HHHHHHHHhh---CCCcEEEEEccCCCCce
Confidence            9999983221 11111            2222222211111122      5788888862   25688889888899997


Q ss_pred             eeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccCccceEEEEeCHHHHHhhcc
Q 011777          267 VELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGLPLGAVVTTPEIANVMAQ  344 (477)
Q Consensus       267 ~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pig~v~~~~~~~~~~~~  344 (477)
                      +.+    +++|.++|++||+++|+||+|+ ++.   ..+..+.++  +|+++  ++|+++++.++|++++++++++.+..
T Consensus       152 ~~~----l~~i~~l~~~~~~~li~D~a~~-~~~---~~~~~~~~~--~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~  221 (416)
T 3isl_A          152 IHP----LKAIGEACRTEDALFIVDAVAT-IGG---CEVKVDEWK--IDAAIGGTQKCLSVPSGMAPITYNERVADVIAA  221 (416)
T ss_dssp             ECC----CHHHHHHHHHTTCEEEEECTTT-TTT---SCCCTTTTT--CSEEECCSSSTTCCCSSEEEEEECHHHHHHHHT
T ss_pred             ecC----HHHHHHHHHHcCCEEEEECCcc-ccC---CCcchhhcC--CCEEEecCccccCCCCCeEEEEECHHHHHHhhc
Confidence            776    8999999999999999999987 322   122223333  56664  56998888889999999998877653


Q ss_pred             cc--------------------------------------cccCCCCcHHHHHHHHHHHHhhchh---hHHHHHHHHHHH
Q 011777          345 KI--------------------------------------QFNTFGGNPVCSAGGLAVLRVIDKE---RRQAHCADVGSH  383 (477)
Q Consensus       345 ~~--------------------------------------~~~t~~~~~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~  383 (477)
                      ..                                      .....+.|..++++..++++.+.+.   +..++++++.++
T Consensus       222 ~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~  301 (416)
T 3isl_A          222 RKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAA  301 (416)
T ss_dssp             C------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             cccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            11                                      1123345778888888888876543   677778888888


Q ss_pred             HHHHHHHHHHhCCCceee-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccC--CCCCEEEEeCCCCCc
Q 011777          384 LLGRLRTLQERHDIIGDV-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGG--LHGNVFRIKPPMCFT  459 (477)
Q Consensus       384 l~~~L~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--~~~~~iRi~p~~~~t  459 (477)
                      +.+.|+++  ........ ...+.++++.+...        ....++.+.|.++ ||.+.++.  ..++++||+++...+
T Consensus       302 l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~  371 (416)
T 3isl_A          302 LAAGIKAM--GLRLFGDDSCKMPVVTCVEIPGG--------IDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSC  371 (416)
T ss_dssp             HHHHHHHT--TCCBCSCGGGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGC
T ss_pred             HHHHHHHc--CCEeccCccccCCcEEEEeCCCC--------CCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCC
Confidence            88888774  22222111 11256666665211        1245788888887 99998763  235799999866666


Q ss_pred             HHH-HHHHHHHHHHHHhh
Q 011777          460 KDD-ADFLVDALDYSMSK  476 (477)
Q Consensus       460 ~e~-i~~~l~~l~~~l~~  476 (477)
                      ++| +++++++|++++++
T Consensus       372 ~~e~i~~~~~~l~~~~~~  389 (416)
T 3isl_A          372 RKENVLFVLAGLEAVLLR  389 (416)
T ss_dssp             SHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHH
Confidence            666 99999999998865

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.94  E-value=7.8e-26  Score=228.75  Aligned_cols=333  Identities=14%  Similarity=0.083  Sum_probs=216.2

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhh-cc--cccccc--CChH---HHH-HHHHHHhhCCCCCCEEEEeCChHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKL-LQ--HATTIY--LHHA---IAD-FAEALASKMPGNLKVVYFVNSGTE  166 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~-~~--~~~~~~--~~~~---~~~-l~~~La~~~~~~~~~v~~~~sGse  166 (477)
                      ++|||+.++...  +   +|+|.+++.+++.+ ..  +....+  ..+.   .++ .+++++++++.+. ..+++++|++
T Consensus        23 ~~~i~~~~~~~~--~---~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~-~~i~~~sGt~   96 (407)
T 2dkj_A           23 REGLELIASENF--V---SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAW-ANVQPHSGSQ   96 (407)
T ss_dssp             HTSEECCTTCCC--C---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHH
T ss_pred             hcceeeccCCCC--C---CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCc-ceEEecchHH
Confidence            368899888753  3   89999999998864 21  111111  1222   222 2258888886643 3356778899


Q ss_pred             HHHHHHHHHHhccCCceEEEEccCccCCc--ccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHH
Q 011777          167 ANELAMLMARLSTGNLGMIALRNAYHGGS--SGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHI  244 (477)
Q Consensus       167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i  244 (477)
                      |++.+++.+.  .+++.|++.+++|++..  .......+..          +..++.+... ..+..|    .+++++.+
T Consensus        97 a~~~~~~~~~--~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~-~~~~~d----~~~l~~~l  159 (407)
T 2dkj_A           97 ANMAVYMALM--EPGDTLMGMDLAAGGHLTHGSRVNFSGKL----------YKVVSYGVRP-DTELID----LEEVRRLA  159 (407)
T ss_dssp             HHHHHHHHHC--CTTCEEEEECGGGTCCGGGTCTTSHHHHH----------SEEEEECCCT-TTSSCC----HHHHHHHH
T ss_pred             HHHHHHHHhc--CCCCEEEEecccccCccchHHHHHhcCce----------EEEEecCCCc-ccCccC----HHHHHHHH
Confidence            9999999873  46678999999998774  2222222110          0111111000 011112    57888888


Q ss_pred             hccCCCCeeEEEe-cccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccC-ccCCCCCCccccccCCCccee--eec
Q 011777          245 DFGTSGKVAGFIA-ETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG-FGRTGSHYWGFETQGVIPDIV--TMA  320 (477)
Q Consensus       245 ~~~~~~~~a~vi~-epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g-fgr~G~~~~~~~~~gv~pDiv--t~s  320 (477)
                      +.   .++++|++ +|+++   .+.+    +++|.++|++||+++|+||+|++ +...| .....  .+ .+|++  ++|
T Consensus       160 ~~---~~~~~v~~~~p~~~---~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~-~~~~~--~~-~~di~~~s~s  225 (407)
T 2dkj_A          160 LE---HRPKVIVAGASAYP---RFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAG-LHPNP--LP-YAHVVTSTTH  225 (407)
T ss_dssp             HH---HCCSEEEECCSSCC---SCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTT-CSCCC--TT-TCSEEEEESS
T ss_pred             hh---cCCeEEEEeccccC---CCCC----HHHHHHHHHHcCCEEEEEccccccccccC-ccCCc--cc-cccEEEEecc
Confidence            62   14566666 77765   2333    89999999999999999999986 54445 22111  11 25777  789


Q ss_pred             ccccCccceEEEEeC-HHHHHhhcccc-cccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhC
Q 011777          321 KGIGNGLPLGAVVTT-PEIANVMAQKI-QFNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERH  395 (477)
Q Consensus       321 K~lg~G~pig~v~~~-~~~~~~~~~~~-~~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~  395 (477)
                      |+++ |+++|+++++ +++++.+.... ++.+.+.++..++++.++++.+..   +++.++++++.+++.+.|+++  ..
T Consensus       226 K~l~-g~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~  302 (407)
T 2dkj_A          226 KTLR-GPRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR--GY  302 (407)
T ss_dssp             GGGC-CCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred             ccCC-CCCceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC--Cc
Confidence            9887 5678999999 89988776533 334445677777777788877533   456777778888888877764  22


Q ss_pred             CCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--------CCCEEEEeCCC----CCcHHHH
Q 011777          396 DIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--------HGNVFRIKPPM----CFTKDDA  463 (477)
Q Consensus       396 ~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--------~~~~iRi~p~~----~~t~e~i  463 (477)
                      ..... ++.|.++++++....       .....+.+.|.++||.+.++..        ..+++|++++.    .++++|+
T Consensus       303 ~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i  374 (407)
T 2dkj_A          303 RIVTG-GTDNHLFLVDLRPKG-------LTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEM  374 (407)
T ss_dssp             EEGGG-SCSSSEEEEECGGGT-------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGH
T ss_pred             eeecC-CCCceEEEEECcccC-------CCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHH
Confidence            22211 356888888774210       0145678889999999987632        24689998765    3799999


Q ss_pred             HHHHHHHHHHHhh
Q 011777          464 DFLVDALDYSMSK  476 (477)
Q Consensus       464 ~~~l~~l~~~l~~  476 (477)
                      ++++++|++++++
T Consensus       375 ~~~~~~l~~~~~~  387 (407)
T 2dkj_A          375 PLVAELIDRALLE  387 (407)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988753

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.94  E-value=2.1e-26  Score=227.85  Aligned_cols=316  Identities=15%  Similarity=0.107  Sum_probs=215.3

Q ss_pred             CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCC--CCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccC
Q 011777          113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGN--LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNA  190 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~--~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~  190 (477)
                      .+|+|++++.+++..  +.. ....+...+++++|+++++.+  .+++++++||++|++.+++.+.   + ++|++.+++
T Consensus        11 ~~~~v~~a~~~~~~~--~~~-~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~---~-d~vl~~~~~   83 (353)
T 2yrr_A           11 IPERVQKALLRPMRG--HLD-PEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD---R-GPVLVLVNG   83 (353)
T ss_dssp             CCHHHHGGGGSCCCC--TTC-HHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS---C-CCEEEEECS
T ss_pred             CCHHHHHHHhccccc--ccC-HHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc---C-CcEEEEcCC
Confidence            589999998876653  211 111344789999999998764  5789999999999999998553   3 789999999


Q ss_pred             ccCCccc-ccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeC
Q 011777          191 YHGGSSG-TIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVEL  269 (477)
Q Consensus       191 yhG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~  269 (477)
                      ||+.... .....+.          .+..++...  ....+      .+++++.++.   .++++|+++++++++|.+.+
T Consensus        84 ~~~~~~~~~~~~~g~----------~~~~v~~~~--~~~~d------~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~  142 (353)
T 2yrr_A           84 AFSQRVAEMAALHGL----------DPEVLDFPP--GEPVD------PEAVARALKR---RRYRMVALVHGETSTGVLNP  142 (353)
T ss_dssp             HHHHHHHHHHHHTTC----------CEEEEECCT--TSCCC------HHHHHHHHHH---SCCSEEEEESEETTTTEECC
T ss_pred             CchHHHHHHHHHcCC----------ceEEEeCCC--CCCCC------HHHHHHHHHh---CCCCEEEEEccCCCcceecC
Confidence            9985111 1111110          122232211  11122      5788888862   15678888888888998776


Q ss_pred             CchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccCccceEEEEeCHHHHHhhcc---
Q 011777          270 APGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGLPLGAVVTTPEIANVMAQ---  344 (477)
Q Consensus       270 ~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pig~v~~~~~~~~~~~~---  344 (477)
                          +++|.++|++||+++|+||+|+ +|...   +.+..++  +|+++  ++|.++++.++|++++++++++.+..   
T Consensus       143 ----~~~i~~l~~~~~~~li~D~a~~-~~~~~---~~~~~~~--~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~  212 (353)
T 2yrr_A          143 ----AEAIGALAKEAGALFFLDAVTT-LGMLP---FSMRAMG--VDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRG  212 (353)
T ss_dssp             ----HHHHHHHHHHHTCEEEEECTTT-TTTSC---CCHHHHT--CSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCSC
T ss_pred             ----HHHHHHHHHHcCCeEEEEcCcc-ccccc---ccccccC--ceEEEecCcccccCCCceEEEEECHHHHHHhccCCC
Confidence                8999999999999999999994 65432   2233333  56665  56988876668999999999877651   


Q ss_pred             c------------ccccCCCCcHHHHHHHHHHHHhhchh---hHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEE
Q 011777          345 K------------IQFNTFGGNPVCSAGGLAVLRVIDKE---RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVG  409 (477)
Q Consensus       345 ~------------~~~~t~~~~~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~  409 (477)
                      .            .....++.|+.+++++.++++.+.++   +..++++++.+++.+.|+++  ...........+.+++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~  290 (353)
T 2yrr_A          213 WYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR--GFRPYPKASPLPTVLV  290 (353)
T ss_dssp             STTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCEESCSSSBCTTEEE
T ss_pred             ccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC--CCccccCccCCCeEEE
Confidence            0            11223456778888888888876543   46677778888888888764  2221111111355556


Q ss_pred             EEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--CCCEEEEeCCCCCcHHHHH-HHHHHHHHHHhh
Q 011777          410 MELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--HGNVFRIKPPMCFTKDDAD-FLVDALDYSMSK  476 (477)
Q Consensus       410 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~e~i~-~~l~~l~~~l~~  476 (477)
                      +.+...        ....++.+.|.++||.+.++..  ..+++|++++...+++|++ +++++|+++++.
T Consensus       291 ~~~~~~--------~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~  352 (353)
T 2yrr_A          291 VRPPEG--------VDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL  352 (353)
T ss_dssp             EECCTT--------CCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred             EECCCC--------CCHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence            665211        1145788899999999987642  2578999988888999999 999999998864

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.94  E-value=8.4e-26  Score=223.77  Aligned_cols=313  Identities=17%  Similarity=0.089  Sum_probs=212.1

Q ss_pred             CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCcc
Q 011777          113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYH  192 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yh  192 (477)
                      .+|+|++++.+++..  + ......+...+++++|+++++.+.+.+++++||++|++.+++.+.  .++++|++.+++|+
T Consensus        12 ~~~~v~~a~~~~~~~--~-~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~--~~gd~vl~~~~~~~   86 (352)
T 1iug_A           12 LHPKALEALARPQLH--H-RTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF--APGERVLVPVYGKF   86 (352)
T ss_dssp             CCHHHHHHHHSCCCC--T-TSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC--CTTCEEEEEECSHH
T ss_pred             CCHHHHHHhccCCCC--c-cCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhcc--CCCCeEEEEeCCch
Confidence            689999999886642  1 111123456889999999987766789999999999999999763  35678999999999


Q ss_pred             CCccccc-ccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCc
Q 011777          193 GGSSGTI-GLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAP  271 (477)
Q Consensus       193 G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~  271 (477)
                      +.....+ ...+.          .+..++.+.  ...++      .+++++       +++++|+++++++++|.+.+  
T Consensus        87 ~~~~~~~~~~~g~----------~~~~v~~~~--~~~~d------~~~l~~-------~~~~~v~~~~~~nptG~~~~--  139 (352)
T 1iug_A           87 SERFYEIALEAGL----------VVERLDYPY--GDTPR------PEDVAK-------EGYAGLLLVHSETSTGALAD--  139 (352)
T ss_dssp             HHHHHHHHHHTTC----------EEEEEECCT--TCCCC------TTTSCC-------SSCSEEEEESEETTTTEECC--
T ss_pred             hHHHHHHHHHcCC----------ceEEEeCCC--CCCCC------HHHHhc-------cCCcEEEEEEecCCcceecC--
Confidence            8641111 10110          122222211  11111      133322       35678888888888998776  


Q ss_pred             hhHHHHHHHHHHh--CcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccCccceEEEEeCHHHHHhhcc---
Q 011777          272 GYLKLVYDIVRKA--GGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGLPLGAVVTTPEIANVMAQ---  344 (477)
Q Consensus       272 ~~l~~l~~l~~~~--gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pig~v~~~~~~~~~~~~---  344 (477)
                        +++|.++|++|  |+++|+||+|+ +|..   .+....++  +|+++  ++|+++++.++|++++++++++.+..   
T Consensus       140 --l~~i~~l~~~~~~~~~li~D~a~~-~~~~---~~~~~~~~--~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~  211 (352)
T 1iug_A          140 --LPALARAFKEKNPEGLVGADMVTS-LLVG---EVALEAMG--VDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGY  211 (352)
T ss_dssp             --HHHHHHHHHHHCTTCEEEEECTTT-BTTB---CCCSGGGT--CSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSS
T ss_pred             --HHHHHHHHHhhCCCCEEEEECCcc-ccCc---ceeccccC--eeEEEecCcccccCCCceeEEEECHHHHHHhhCCCc
Confidence              89999999999  99999999996 5432   22223233  56664  66988876678999999997755211   


Q ss_pred             ----------c-ccccCCCCcHHHHHHHHHHHHhhchh--hHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEE
Q 011777          345 ----------K-IQFNTFGGNPVCSAGGLAVLRVIDKE--RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGME  411 (477)
Q Consensus       345 ----------~-~~~~t~~~~~~~~aaa~a~l~~l~~~--~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~  411 (477)
                                . .....++.|+.+++++.++++.+++.  +..++++++.+++.+.|+++  ........ ..+.++++.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~-~~~~~~~~~  288 (352)
T 1iug_A          212 YLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG--GLRPVPKR-FSPAVAAFY  288 (352)
T ss_dssp             TTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT--TCEESCSS-BCTTCEEEE
T ss_pred             eeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCcccccc-cCCeEEEEE
Confidence                      0 12234456788888888888876543  56677777777777777664  22111110 156777877


Q ss_pred             EeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          412 LVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--HGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +...        ....++.+.|.++||.+.++..  ..+++||+++...+++|+++++++|++++++
T Consensus       289 ~~~~--------~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  347 (352)
T 1iug_A          289 LPEG--------VPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEE  347 (352)
T ss_dssp             CCTT--------CCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCC--------CCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHH
Confidence            6311        1145688899999999987642  2578999999888999999999999998764

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.94  E-value=2.7e-26  Score=236.76  Aligned_cols=346  Identities=14%  Similarity=0.112  Sum_probs=208.9

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccccccc-CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIY-LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAML  173 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~-~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~  173 (477)
                      |+.||||.+++++       |+|++++.+++....   ..| ..+...+|+++|+++++.  ++++|++||+||++.|++
T Consensus        40 ~~~ylD~~~~~~~-------~~v~~a~~~~l~~~~---~~y~~~~~~~~l~~~la~~~~~--~~v~~t~~gt~A~~~al~  107 (467)
T 2oqx_A           40 EDVFIDLLTDSGT-------GAVTQSMQAAMMRGD---EAYSGSRSYYALAESVKNIFGY--QYTIPTHQGRGAEQIYIP  107 (467)
T ss_dssp             GGCSEECSCCSSC-------SCCCHHHHHHTTSCC---CCSSSCHHHHHHHHHHHHHHCC--SEEEEEC--CCSHHHHHH
T ss_pred             CCeeEecccCCCc-------HHHHHHHHHHhccCc---ceeccCchhHHHHHHHHHHhCc--CcEEEcCCcHHHHHHHHH
Confidence            6689999887763       789999988875422   123 356678999999999854  789999999999999999


Q ss_pred             HHHhcc----C--C-ceEEEEccCccCCccccccc-ccCCCCCCCCCCCCeeeecCC----CCcCCCCCCCHHHHHHHHH
Q 011777          174 MARLST----G--N-LGMIALRNAYHGGSSGTIGL-TALNTWKYPIPQGEIHHVVNP----DPYHGSFGSDAARYAQDLQ  241 (477)
Q Consensus       174 ~ar~~~----~--~-~~ii~~~~~yhG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~le  241 (477)
                      +++..+    |  + +.|+..  .||+.+...... .+.....      ++.....+    .++....  |    +++|+
T Consensus       108 ~~~~~~~~~~G~~~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--d----~~~Le  173 (467)
T 2oqx_A          108 VLIKKREQEKGLDRSKMVAFS--NYFFDTTQGHSQINGCTVRN------VYIKEAFDTGVRYDFKGNF--D----LEGLE  173 (467)
T ss_dssp             HHHHHHHHHHCCCTTTCEEEE--SSCCHHHHHHHHHTTCEEEE------CBCTTTTCTTSCCTTTTCB--C----HHHHH
T ss_pred             HHhccccccCCCCccceEEec--ccccccchhhhhccCcceee------ccccccccCCCCCCccCCc--C----HHHHH
Confidence            987652    4  2 556654  578653221111 1100000      00000000    0111111  2    58888


Q ss_pred             HHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccC----------ccCCCCCCcccc--c
Q 011777          242 DHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG----------FGRTGSHYWGFE--T  309 (477)
Q Consensus       242 ~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g----------fgr~G~~~~~~~--~  309 (477)
                      ++++....+++++|++++++|++|..+++.+++++|+++|++||++||+|++|..          .++.|.....+.  .
T Consensus       174 ~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~  253 (467)
T 2oqx_A          174 RGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRET  253 (467)
T ss_dssp             HHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHH
T ss_pred             HHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhh
Confidence            8887321136899999998888644778999999999999999999999977643          133341111110  0


Q ss_pred             cCCCcc--eeeecccccCccce-EEEEeCHH-HHHhh---cccc----cccCCCCcHHHHHHHH-HHHHhhchhhHHHHH
Q 011777          310 QGVIPD--IVTMAKGIGNGLPL-GAVVTTPE-IANVM---AQKI----QFNTFGGNPVCSAGGL-AVLRVIDKERRQAHC  377 (477)
Q Consensus       310 ~gv~pD--ivt~sK~lg~G~pi-g~v~~~~~-~~~~~---~~~~----~~~t~~~~~~~~aaa~-a~l~~l~~~~~~~~~  377 (477)
                      + ..+|  +.+++|+++.  |+ |+++++++ +++.+   ....    ...+++.......+++ ..++...+++..++.
T Consensus       254 ~-~~~d~~~~s~sK~~g~--~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~  330 (467)
T 2oqx_A          254 Y-KYADMLAMSAKKDAMV--PMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYR  330 (467)
T ss_dssp             G-GGCSEEEEESSSTTCC--SSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             h-ccCCeEEEecccccCC--CCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHH
Confidence            0 1134  4567898863  43 56677766 44333   2211    1112333322222222 223322223455666


Q ss_pred             HHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEee--CCCCCCccHHHHHHHHHHH-HHcCceeeccCC---------
Q 011777          378 ADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVT--DRKEKTPAKAETAVLFEKL-RELGVLVGKGGL---------  445 (477)
Q Consensus       378 ~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~--~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~---------  445 (477)
                      .++++++.+.|+++  .++.+   +..|.++++++..  ....  ........+.+.| .++||.+.+++.         
T Consensus       331 ~~~~~~l~~~L~~~--~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~  403 (467)
T 2oqx_A          331 IAQVQYLVDGLEEI--GVVCQ---QAGGHAAFVDAGKLLPHIP--ADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKT  403 (467)
T ss_dssp             HHHHHHHHHHHHHT--TCCEE---EECSSCEEEEHHHHSTTSC--GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTT
T ss_pred             HHHHHHHHHHHHHC--CCeee---cCCceEEEEechhhcccCC--cccccHHHHHHHHHHhcCceecccccccccccccc
Confidence            78888888888875  33333   3346667776632  1100  1110145677888 889999987542         


Q ss_pred             ------CCCEEEEeCCCC-CcHHHHHHHHHHHHHHHhh
Q 011777          446 ------HGNVFRIKPPMC-FTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       446 ------~~~~iRi~p~~~-~t~e~i~~~l~~l~~~l~~  476 (477)
                            ..+++||+++.. +|++||++++++|++++++
T Consensus       404 g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~  441 (467)
T 2oqx_A          404 GKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN  441 (467)
T ss_dssp             CSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHS
T ss_pred             cccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence                  127999999998 9999999999999998764

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.94  E-value=4.9e-25  Score=220.32  Aligned_cols=327  Identities=13%  Similarity=0.081  Sum_probs=215.2

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhccc-cc-----cccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH-AT-----TIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANEL  170 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~-~~-----~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~  170 (477)
                      -|||+.++.      +.+|++.+++.+++.+... ..     ..+..+...+++++++++++.+.+++++++||++|++.
T Consensus         2 iyld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~   75 (382)
T 4hvk_A            2 AYFDYTSAK------PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNL   75 (382)
T ss_dssp             CBCBTTTCC------CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHH
T ss_pred             EeecCCCcC------CCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHH
Confidence            378876543      5789999999999876321 11     11224556789999999998777789999999999999


Q ss_pred             HHHHHHh--ccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          171 AMLMARL--STGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       171 Al~~ar~--~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      +++.+..  ..+++.|++.++.|++..........          .|...+.++......++      +++|++.++   
T Consensus        76 ~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~~~~~d------~~~l~~~i~---  136 (382)
T 4hvk_A           76 AIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQK----------QGFEVEYIPVGKYGEVD------VSFIDQKLR---  136 (382)
T ss_dssp             HHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHH----------TTCEEEEECBCTTSCBC------HHHHHHHCC---
T ss_pred             HHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHh----------cCCEEEEeccCCCCCcC------HHHHHHHhc---
Confidence            9997642  13567899988888876544332211          02222222211111112      578888775   


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccCc
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGNG  326 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G  326 (477)
                       +++++|+++++++++|.+.+    +++|.++|++||+ +|+||+|+ ++.   ..+..+..+  +|++  +++|.+| +
T Consensus       137 -~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~-~~~---~~~~~~~~~--~d~~~~s~~K~~g-~  203 (382)
T 4hvk_A          137 -DDTILVSVQHANNEIGTIQP----VEEISEVLAGKAA-LHIDATAS-VGQ---IEVDVEKIG--ADMLTISSNDIYG-P  203 (382)
T ss_dssp             -TTEEEEECCSBCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTT-BTT---BCCCHHHHT--CSEEEEESGGGTS-C
T ss_pred             -cCceEEEEECCCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHh-cCC---CCCCchhcC--CCEEEEeHHHhcC-C
Confidence             46789999999999998776    8999999999999 99999987 332   122233334  4555  5679654 3


Q ss_pred             cceEEEEeCHHHHHhhcccccc-------cCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 011777          327 LPLGAVVTTPEIANVMAQKIQF-------NTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDI  397 (477)
Q Consensus       327 ~pig~v~~~~~~~~~~~~~~~~-------~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~  397 (477)
                      .++|+++++++.  .+.....+       ...+.|+.++++..++++.+.+  ++..++.+++.+++.+.|++    .+.
T Consensus       204 ~g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~  277 (382)
T 4hvk_A          204 KGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK----IEE  277 (382)
T ss_dssp             TTCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----STT
T ss_pred             CceEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc----CCC
Confidence            358888887764  23222211       1334577888888888876543  34556666666666665543    332


Q ss_pred             ceeeec----cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC---------------------CCEEEE
Q 011777          398 IGDVRG----RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH---------------------GNVFRI  452 (477)
Q Consensus       398 ~~~v~g----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---------------------~~~iRi  452 (477)
                      +.....    .+.++.+.+...         ....+.+.|.++||.+.++..+                     .+++||
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl  348 (382)
T 4hvk_A          278 SYLNGHPEKRLPNNVNVRFSYI---------EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLL  348 (382)
T ss_dssp             EEECSCSSSBCTTEEEEEETTC---------CHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEE
T ss_pred             eEEeCCccccCCCEEEEEECCC---------CHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEE
Confidence            221111    123555555210         1456888999999999876311                     478999


Q ss_pred             eCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          453 KPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       453 ~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +++..+|++|+++++++|++++++
T Consensus       349 ~~~~~~t~e~i~~~~~~l~~~~~~  372 (382)
T 4hvk_A          349 TLGRYNTDEDVDRLLEVLPGVIER  372 (382)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998764

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.94  E-value=4.7e-26  Score=238.62  Aligned_cols=354  Identities=11%  Similarity=0.019  Sum_probs=214.8

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhcccc-ccccCChHHHHHHHHHHhh----CCCC-CCEEEEeCChHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHA-TTIYLHHAIADFAEALASK----MPGN-LKVVYFVNSGTEANE  169 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~-~~~~~~~~~~~l~~~La~~----~~~~-~~~v~~~~sGseA~~  169 (477)
                      ..|++...+.+....++.+|++++++.+++....+. ...+..+.+..+++.+.+.    .+.. .++|++|+||++|+.
T Consensus        99 ~~~~~~~i~l~~g~~~~~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~  178 (533)
T 3f6t_A           99 DKFLIDAVNYCHTELGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIV  178 (533)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHH
T ss_pred             ccccHhheeccCCCCCcCCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHH
Confidence            344444433444456677899999998888754333 2234455667777777655    2222 368999999999999


Q ss_pred             HHHHHHH---hccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777          170 LAMLMAR---LSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF  246 (477)
Q Consensus       170 ~Al~~ar---~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~  246 (477)
                      .+++...   ...+++.|++.+++|+++.........           .+..++........+..|    .++|+++++ 
T Consensus       179 ~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~-----------~~~~v~~~~~~~~~~~~d----~~~l~~~l~-  242 (533)
T 3f6t_A          179 YAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDY-----------ELVEVDLHSYEKNDWEIE----PNEIEKLKD-  242 (533)
T ss_dssp             HHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGS-----------EEEEECCCEETTTTSEEC----HHHHHHHSC-
T ss_pred             HHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCC-----------eEEEEEecCCcccCCCCC----HHHHHHHhC-
Confidence            9998531   123567899999999987655443321           122222111001111112    477887765 


Q ss_pred             cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHH-HhCcEEEEcCcccCccCCCCCCccccccCCCcceeeeccccc-
Q 011777          247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVR-KAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIG-  324 (477)
Q Consensus       247 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~-~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg-  324 (477)
                         .++++|+++..++++|. .++.+.+++|.++|+ +||+++|+||+|.+|.+.+..+.. ...+....+.+|||.+| 
T Consensus       243 ---~~~k~v~l~~p~NPtG~-~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~-~~~~~~i~~~S~SK~~g~  317 (533)
T 3f6t_A          243 ---PSIKALIVVNPTNPTSK-EFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYS-VVPYNTMLVYSYSKLFGC  317 (533)
T ss_dssp             ---TTEEEEEEESSCTTTCB-CCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHH-HSGGGEEEEEESHHHHTC
T ss_pred             ---CCCeEEEEeCCCCCCcc-ccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhh-cCCCCEEEEecCcccCCC
Confidence               46777776555677774 557888999999999 689999999999998765422221 22344456778999999 


Q ss_pred             CccceEEEEeCHH-----HHHhh--------------------------------cccccccCCCCcHHHHHH----HHH
Q 011777          325 NGLPLGAVVTTPE-----IANVM--------------------------------AQKIQFNTFGGNPVCSAG----GLA  363 (477)
Q Consensus       325 ~G~pig~v~~~~~-----~~~~~--------------------------------~~~~~~~t~~~~~~~~aa----a~a  363 (477)
                      .|+|+||++++++     +++.+                                .......+.+.+++++++    +++
T Consensus       318 ~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~  397 (533)
T 3f6t_A          318 TGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMT  397 (533)
T ss_dssp             GGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHH
T ss_pred             cccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHH
Confidence            6999999999876     44333                                233344566677777776    445


Q ss_pred             HHH------hhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCcc--------HHHHH
Q 011777          364 VLR------VIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPA--------KAETA  427 (477)
Q Consensus       364 ~l~------~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~--------~~~~~  427 (477)
                      +|.      ...+  ++..++++++.+++.+.|.     .+........|+++++++..-.......        .....
T Consensus       398 ~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-----~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~  472 (533)
T 3f6t_A          398 HLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-----APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQV  472 (533)
T ss_dssp             HHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-----CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHH
T ss_pred             HHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-----CCccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHH
Confidence            552      1111  2233444444444444442     3322222344666676653100000000        00112


Q ss_pred             HH-HHHHHHcCceeeccCCC---CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          428 VL-FEKLRELGVLVGKGGLH---GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       428 ~~-~~~l~~~Gv~v~~~~~~---~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ++ .+.+.++||.+.|+..+   .+++||++. .++++++++++++|.+++++
T Consensus       473 ~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a-~~~~e~i~~~i~~L~~~l~~  524 (533)
T 3f6t_A          473 DFLLKLAEKNGVVLVDGVGFGAKPGELRVSQA-NLPTEDYALIGKQVLELLKE  524 (533)
T ss_dssp             HHHHHHHHHTTSSSCTTEEECSSTTEEEEESS-SSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCEEEeCCcccCCCCCEEEEEEe-eCCHHHHHHHHHHHHHHHHH
Confidence            34 44455789999887432   478999863 36899999999999998864

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.94  E-value=1.6e-25  Score=222.16  Aligned_cols=328  Identities=13%  Similarity=0.080  Sum_probs=206.4

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLM  174 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~  174 (477)
                      ...+|||.++.    .++++|+|++++.+++..  +.......+...+++++|+++++ ....++|++||++|++.+++.
T Consensus         6 ~~~~id~~~~~----~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~l~~~la~~~g-~~~~v~~~~~gt~a~~~al~~   78 (356)
T 1v72_A            6 RPPALGFSSDN----IAGASPEVAQALVKHSSG--QAGPYGTDELTAQVKRKFCEIFE-RDVEVFLVPTGTAANALCLSA   78 (356)
T ss_dssp             CCCCCBCSCGG----GCCCCHHHHHHHHHTTSS--CCCSTTCSHHHHHHHHHHHHHHT-SCCEEEEESCHHHHHHHHHHT
T ss_pred             CCceEeeccCC----ccCCCHHHHHHHHhhccC--cccccccchHHHHHHHHHHHHhC-CCCcEEEeCCccHHHHHHHHH
Confidence            35689998753    467899999999987632  22222246778899999999987 334699999999999999997


Q ss_pred             HHhccCCceEEEEccCccCCcccc--cccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHH-HHhc---cC
Q 011777          175 ARLSTGNLGMIALRNAYHGGSSGT--IGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQD-HIDF---GT  248 (477)
Q Consensus       175 ar~~~~~~~ii~~~~~yhG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~-~i~~---~~  248 (477)
                      ++.  +++.|++..++ |+.....  +.....          |...+.+|... ..++      +++|++ +++.   .+
T Consensus        79 ~~~--~gd~vi~~~~~-~~~~~~~~~~~~~~~----------g~~~~~v~~~~-~~~d------~~~l~~~~i~~~~~~~  138 (356)
T 1v72_A           79 MTP--PWGNIYCHPAS-HINNDECGAPEFFSN----------GAKLMTVDGPA-AKLD------IVRLRERTREKVGDVH  138 (356)
T ss_dssp             SCC--TTEEEEECTTS-HHHHSSTTHHHHHTT----------SCEEEECCCGG-GCCC------HHHHHHHTTSSTTCTT
T ss_pred             hcC--CCCEEEEcCcc-chhhhhchHHHHHhC----------CcEEEEecCCC-CeEc------HHHHHHHhhhcchhhc
Confidence            543  45566665554 4433322  222100          11222222211 1112      578888 7762   11


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCcc--CCCCCCccccccC--CCccee--eeccc
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG--RTGSHYWGFETQG--VIPDIV--TMAKG  322 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfg--r~G~~~~~~~~~g--v~pDiv--t~sK~  322 (477)
                      ..++++|++++.++ +| .+++.+++++|.++|++||++||+||+|..+.  ..|...   ...+  ...|++  +++|+
T Consensus       139 ~~~~~~v~~~~~~~-tG-~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~~~~~~~~d~~~~s~sK~  213 (356)
T 1v72_A          139 TTQPACVSITQATE-VG-SIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSP---AEMTWKAGVDALSFGATKN  213 (356)
T ss_dssp             SCEEEEEEEESSCT-TS-CCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCT---TTTTGGGTCCEEEECCGGG
T ss_pred             cCCceEEEEEcCCC-CC-ccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCH---HHhhhhhcCCEEEEecccC
Confidence            23688999998664 77 45788999999999999999999999997542  112111   1111  134554  46787


Q ss_pred             ccCccceE--EEEeCHHHHHhhccc-ccccCCCCcHHHHHHHHHHHHhhchh---hHHHHHHHHHHHHHHHHHHHHHhCC
Q 011777          323 IGNGLPLG--AVVTTPEIANVMAQK-IQFNTFGGNPVCSAGGLAVLRVIDKE---RRQAHCADVGSHLLGRLRTLQERHD  396 (477)
Q Consensus       323 lg~G~pig--~v~~~~~~~~~~~~~-~~~~t~~~~~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~  396 (477)
                         |.|+|  ++++++++++.+... .+.++....  +..++.++++.++++   ++.++.+++.+++++.|+++    +
T Consensus       214 ---g~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----~  284 (356)
T 1v72_A          214 ---GVLAAEAIVLFNTSLATEMSYRRKRAGHLSSK--MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGL----G  284 (356)
T ss_dssp             ---TCSSCEEEEESSGGGHHHHHHHHHHTTCCCSS--THHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTC----T
T ss_pred             ---CCcCccEEEEECHHHHhhHHHHhhccCchhhh--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhC----C
Confidence               33666  788899888776532 122222221  122333445555443   34455566666666665442    2


Q ss_pred             Ccee-eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          397 IIGD-VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       397 ~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      .+.. .+..+.++++.+.             .++.+.|.++||.+.++....+++||++++.++++++++++++|+++++
T Consensus       285 g~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~  351 (356)
T 1v72_A          285 GVEVLGGTEANILFCRLD-------------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAAD  351 (356)
T ss_dssp             TEEEESCCCSSEEEEEEC-------------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC-
T ss_pred             CcEEccCCCccEEEEEcC-------------HHHHHHHHhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            2222 2334566677651             2578888999999987642258999999999999999999999998875


Q ss_pred             h
Q 011777          476 K  476 (477)
Q Consensus       476 ~  476 (477)
                      +
T Consensus       352 ~  352 (356)
T 1v72_A          352 R  352 (356)
T ss_dssp             -
T ss_pred             h
Confidence            4

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.94  E-value=2.4e-25  Score=224.38  Aligned_cols=318  Identities=13%  Similarity=0.111  Sum_probs=214.2

Q ss_pred             CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCC-EEEEeCChHHHHHHHHHHHHhccCCceEEEEccCc
Q 011777          113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLK-VVYFVNSGTEANELAMLMARLSTGNLGMIALRNAY  191 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~-~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~y  191 (477)
                      .+|++++++.+++..  +. ..+......++++.++++++.+.+ ++++++||++|++.+++.+.  .++++|++.+++|
T Consensus        29 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~--~~gd~vl~~~~~~  103 (396)
T 2ch1_A           29 CSKRVLTAMTNTVLS--NF-HAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL--EEGDRVLIAVNGI  103 (396)
T ss_dssp             CCHHHHHHTTSCCCC--TT-CHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--CTTCEEEEEESSH
T ss_pred             CCHHHHHHhcccccc--CC-ChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhc--CCCCeEEEEcCCc
Confidence            578898888765432  11 112234578899999999887666 89999999999999998763  3567899999999


Q ss_pred             cCCcc-cccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCC
Q 011777          192 HGGSS-GTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELA  270 (477)
Q Consensus       192 hG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~  270 (477)
                      ++... ......+.          .+..++...  ....  |    ++++++.++.   .++++|+++++++++|.+.+ 
T Consensus       104 ~~~~~~~~~~~~g~----------~~~~v~~~~--~~~~--d----~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~-  161 (396)
T 2ch1_A          104 WAERAVEMSERYGA----------DVRTIEGPP--DRPF--S----LETLARAIEL---HQPKCLFLTHGDSSSGLLQP-  161 (396)
T ss_dssp             HHHHHHHHHHHTTC----------EEEEEECCT--TSCC--C----HHHHHHHHHH---HCCSEEEEESEETTTTEECC-
T ss_pred             ccHHHHHHHHHcCC----------ceEEecCCC--CCCC--C----HHHHHHHHHh---CCCCEEEEECCCCCCceecC-
Confidence            98631 11111111          122222211  1111  2    5788888862   14678888888888887776 


Q ss_pred             chhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCHHHHHhhcccc--
Q 011777          271 PGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPEIANVMAQKI--  346 (477)
Q Consensus       271 ~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~~~~~~~~~~--  346 (477)
                         +++|.++|++||+++|+||+|+ +|..   .+.++  ...+|++++|  |.++++.++|++++++++++.+....  
T Consensus       162 ---~~~i~~l~~~~~~~li~Dea~~-~g~~---~~~~~--~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~  232 (396)
T 2ch1_A          162 ---LEGVGQICHQHDCLLIVDAVAS-LCGV---PFYMD--KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTK  232 (396)
T ss_dssp             ---CTTHHHHHHHTTCEEEEECTTT-BTTB---CCCTT--TTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSC
T ss_pred             ---HHHHHHHHHHcCCEEEEEcccc-ccCC---ccchh--hcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCc
Confidence               7899999999999999999997 6532   22222  2346777654  99988777899999999887764210  


Q ss_pred             ---------------------cccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCceeee
Q 011777          347 ---------------------QFNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIGDVR  402 (477)
Q Consensus       347 ---------------------~~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~  402 (477)
                                           ....++.+..+++++.++++.+.+   ++..++++++.+++.+.|+++  .........
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~  310 (396)
T 2ch1_A          233 SKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM--GLDIFVKDP  310 (396)
T ss_dssp             CSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH--TCCBSSCSG
T ss_pred             ccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC--CCeeccCCc
Confidence                                 112234577888888888887643   356777788888888888776  232222111


Q ss_pred             --ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccCC--CCCEEEEeC-CCCCcHHHHHHHHHHHHHHHhh
Q 011777          403 --GRGLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGGL--HGNVFRIKP-PMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       403 --g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~--~~~~iRi~p-~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                        ..+.++++.+...        ....++.+.|+++ ||.+.++..  ..+++||++ ++..+++|+++++++|++++++
T Consensus       311 ~~~~~~~~~~~~~~~--------~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~  382 (396)
T 2ch1_A          311 RHRLPTVTGIMIPKG--------VDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKA  382 (396)
T ss_dssp             GGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             cccCCceEEEEcCCC--------CCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHH
Confidence              1234666665211        1245688888875 999987532  357899998 5677999999999999998864

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.94  E-value=7.1e-26  Score=228.52  Aligned_cols=336  Identities=15%  Similarity=0.109  Sum_probs=197.8

Q ss_pred             cEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc------ccccccCChHHHHHHHHHHhhCCCCCCEEEEe
Q 011777           88 QYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ------HATTIYLHHAIADFAEALASKMPGNLKVVYFV  161 (477)
Q Consensus        88 ~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~------~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~  161 (477)
                      .+.++.++..|||+.++.      ..+|+|++++.+++.+..      +....+..+...+++++|+++++.+.++++++
T Consensus        13 ~~~~~~~~~iyld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~   86 (400)
T 3vax_A           13 GLVPRGSHMTYLDAAATT------RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFT   86 (400)
T ss_dssp             ---------CCCCCCCCS------SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred             CCCcccCCcEEecCCCCC------CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEe
Confidence            345677888999987643      468999999999987531      11112234557899999999998777789999


Q ss_pred             CChHHHHHHHHHHHHhc--cCCc-eEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHH
Q 011777          162 NSGTEANELAMLMARLS--TGNL-GMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQ  238 (477)
Q Consensus       162 ~sGseA~~~Al~~ar~~--~~~~-~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (477)
                      +||++|++.+++.+..+  .+++ .|++..+.|++..........          .|...+.+|......++      ++
T Consensus        87 ~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~~~~~d------~~  150 (400)
T 3vax_A           87 SGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAG----------RGFEVDFLTPGPSGRIS------VE  150 (400)
T ss_dssp             SCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHT----------TTCEEEEECCCTTCCCC------HH
T ss_pred             CCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHh----------cCCeEEEEccCCCCCcC------HH
Confidence            99999999999976421  2456 788888888765443332211          12222222221111112      47


Q ss_pred             HHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceee
Q 011777          239 DLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT  318 (477)
Q Consensus       239 ~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt  318 (477)
                      +|+++++    +++++|+++++++++|.+.+    +++|.++|++||+++|+||+|+ ++..     ..+..+. +|+++
T Consensus       151 ~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~-----~~~~~~~-~d~~~  215 (400)
T 3vax_A          151 GVMERLR----PDTLLVSLMHVNNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKV-----PGDLTTP-IDMIS  215 (400)
T ss_dssp             HHHTTCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTS-----GGGGGSC-CSEEE
T ss_pred             HHHHhcC----CCceEEEEECCCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCC-----CcChhhc-CcEEE
Confidence            7777765    46899999999999998776    8999999999999999999997 3221     2233334 78776


Q ss_pred             e--cccccCccceEEEE-eCHH-HH---Hhhcccc-------cccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHH
Q 011777          319 M--AKGIGNGLPLGAVV-TTPE-IA---NVMAQKI-------QFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGS  382 (477)
Q Consensus       319 ~--sK~lg~G~pig~v~-~~~~-~~---~~~~~~~-------~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~  382 (477)
                      +  +|. .|+.++|+++ ++++ +.   ..+....       .....+.++.++++..++++.+.+  ++..++.+++.+
T Consensus       216 ~s~~K~-~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~  294 (400)
T 3vax_A          216 ISGHKI-GAPKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRS  294 (400)
T ss_dssp             EETGGG-TSCSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             EeHHHh-CCCCceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            5  594 4444688888 7762 11   1122211       112344577888888888886654  456667777777


Q ss_pred             HHHHHHHHHHHhCCCceeeec----cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC------------
Q 011777          383 HLLGRLRTLQERHDIIGDVRG----RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH------------  446 (477)
Q Consensus       383 ~l~~~L~~l~~~~~~~~~v~g----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~------------  446 (477)
                      ++.+.|+ +    +.+.....    .+.++.+.+..         ....++.+.|. +||.+.++..+            
T Consensus       295 ~l~~~L~-~----~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~  359 (400)
T 3vax_A          295 RLLAGLA-S----TSFQVNGDQDHVVPHILNLSFED---------VDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLR  359 (400)
T ss_dssp             HHHHHHT-T----TTCEECSCTTSBCTTEEEEECTT---------CCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHH
T ss_pred             HHHHhhC-C----CCEEEeCCcccCCCCEEEEEeCC---------CCHHHHHHHHh-cCcEEEecccccCCCCCccHHHH
Confidence            7777665 2    22211111    23455555421         12456788888 99988775210            


Q ss_pred             ---------CCEEEEeC-CCCCcHHHHHHHHHHHHHHHhh
Q 011777          447 ---------GNVFRIKP-PMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       447 ---------~~~iRi~p-~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                               .+++||++ +...+++|+++++++|++++++
T Consensus       360 ~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~  399 (400)
T 3vax_A          360 AMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS  399 (400)
T ss_dssp             TTTCCHHHHTSEEEEEEEEC--------------------
T ss_pred             HcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence                     38999999 8889999999999999998764

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.93  E-value=8.1e-25  Score=228.62  Aligned_cols=324  Identities=13%  Similarity=0.043  Sum_probs=208.7

Q ss_pred             CCCHHHHHHHHHHHhhcccccc--ccC----ChHHHHHHHHHHhhCCCCC--CEE--EEeCChHHHHHHHHHHHHhccC-
Q 011777          112 HCHPDVLNAIFEQSKLLQHATT--IYL----HHAIADFAEALASKMPGNL--KVV--YFVNSGTEANELAMLMARLSTG-  180 (477)
Q Consensus       112 h~~p~v~~Av~~~l~~~~~~~~--~~~----~~~~~~l~~~La~~~~~~~--~~v--~~~~sGseA~~~Al~~ar~~~~-  180 (477)
                      |+++.+.+++.+++........  ...    .....+++++++++++.+.  +.+  +|++||++|++.+++.++...+ 
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~  186 (514)
T 3mad_A          107 HGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARA  186 (514)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhh
Confidence            4568888888887764322111  111    2334567788899886543  466  9999999999999999876542 


Q ss_pred             -----CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEE
Q 011777          181 -----NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGF  255 (477)
Q Consensus       181 -----~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~v  255 (477)
                           ++.|++..++|+++...+...+.           .+..++...  ....+      +++|+++++    +++++|
T Consensus       187 ~~g~~~d~Vi~~~~~~~~~~~~~~~~G~-----------~v~~v~~~~--~~~~d------~~~Le~~i~----~~~~~v  243 (514)
T 3mad_A          187 TKGITAPEAVVPVSAHAAFDKAAQYFGI-----------KLVRTPLDA--DYRAD------VAAMREAIT----PNTVVV  243 (514)
T ss_dssp             HHCCSSCEEEEETTSCTHHHHHHHHHTC-----------EEEEECBCT--TSCBC------HHHHHHHCC----TTEEEE
T ss_pred             hcCCCCCeEEEeCccchHHHHHHHHcCC-----------eeEEeeeCC--CCCCC------HHHHHHHhc----cCCEEE
Confidence                 27899999998875444333211           122332211  11112      578888876    468899


Q ss_pred             EecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCc-----cCCCC--CCccccccCCCcceeeecccccCccc
Q 011777          256 IAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGF-----GRTGS--HYWGFETQGVIPDIVTMAKGIGNGLP  328 (477)
Q Consensus       256 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gf-----gr~G~--~~~~~~~~gv~pDivt~sK~lg~G~p  328 (477)
                      ++++.++++|.+.+    +++|.++|++||++||+||+|++|     ++.|.  ..+.....++...+.+++|.+.+|.+
T Consensus       244 ~~~~~~nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~  319 (514)
T 3mad_A          244 AGSAPGYPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKG  319 (514)
T ss_dssp             EEETTCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSS
T ss_pred             EEeCCCCCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCC
Confidence            99999999998766    899999999999999999999987     33441  13334455654444456799888899


Q ss_pred             eEEEEeCHHHHHhhcccc--------------cccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHh
Q 011777          329 LGAVVTTPEIANVMAQKI--------------QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQER  394 (477)
Q Consensus       329 ig~v~~~~~~~~~~~~~~--------------~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~  394 (477)
                      +|+++++++.........              .++.+..+.+++.+++..+....-+++.++..++.+++.+.|+++   
T Consensus       320 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~---  396 (514)
T 3mad_A          320 TSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAI---  396 (514)
T ss_dssp             CEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---
T ss_pred             eEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC---
Confidence            999999877654432110              111111223344444444332222456777777888888777653   


Q ss_pred             CCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCC-CCCcHHHHHHHHHHHHHH
Q 011777          395 HDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPP-MCFTKDDADFLVDALDYS  473 (477)
Q Consensus       395 ~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~-~~~t~e~i~~~l~~l~~~  473 (477)
                       +.+..+.....++++....         ....++.+.|.++||++ ++..+++.+|++++ ...++++|++++++|+++
T Consensus       397 -~g~~~~~~~~~~~~~~~~~---------~~~~~l~~~L~~~Gi~v-~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~  465 (514)
T 3mad_A          397 -PSLKILGDPLWVIAVASDE---------LNIYQVMEEMAGRGWRL-NGLHRPPAFHVALTLRHTEPGVVDRFLADLQDA  465 (514)
T ss_dssp             -TTCEESSCCSSEEEEECSS---------SCHHHHHHHHHTTTCBC-EEETTTTEEEEECCGGGGSTTHHHHHHHHHHHH
T ss_pred             -CCeEEeCCCeEEEEEeCCC---------CCHHHHHHHHHhcCCEe-ccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHH
Confidence             2222222223355554311         11457889999999988 44344678999987 445679999999999998


Q ss_pred             Hhh
Q 011777          474 MSK  476 (477)
Q Consensus       474 l~~  476 (477)
                      +++
T Consensus       466 l~~  468 (514)
T 3mad_A          466 VAQ  468 (514)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.93  E-value=9e-25  Score=218.81  Aligned_cols=327  Identities=13%  Similarity=0.094  Sum_probs=215.9

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-cccccc-----CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-HATTIY-----LHHAIADFAEALASKMPGNLKVVYFVNSGTEANEL  170 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-~~~~~~-----~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~  170 (477)
                      .|||+.++      |+.+|+|++++.+++.... +....|     ..+...+++++++++++.+.+++++++||++|++.
T Consensus         2 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~   75 (382)
T 4eb5_A            2 AYFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNL   75 (382)
T ss_dssp             CBCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHH
T ss_pred             eeeccCCC------CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHH
Confidence            37887664      4689999999999987531 111112     13457889999999987766799999999999999


Q ss_pred             HHHHHHhc--cCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          171 AMLMARLS--TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       171 Al~~ar~~--~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      +++.+...  .+++.|++.+++|++.......+..          .|...+.++.......+      +++|++.++   
T Consensus        76 ~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~~~~~d------~~~l~~~i~---  136 (382)
T 4eb5_A           76 AIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQK----------QGFEVEYIPVGKYGEVD------VSFIDQKLR---  136 (382)
T ss_dssp             HHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTT----------TTCEEEEECBCTTSCBC------HHHHHHHCC---
T ss_pred             HHHHHHhhccCCCCEEEECCCcchHHHHHHHHHHh----------CCcEEEEeccCCCCccC------HHHHHHHhc---
Confidence            99987611  3567899999999876544332110          12222222211111111      477888775   


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccCc
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGNG  326 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G  326 (477)
                       +++++|+++.+++++|.+.+    +++|.++|++||++ |+||+|+ +|..   .+....+  .+|++  +++|.+|. 
T Consensus       137 -~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~---~~~~~~~--~~di~~~s~sK~~g~-  203 (382)
T 4eb5_A          137 -DDTILVSVQHANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQI---EVDVEKI--GADMLTISSNDIYGP-  203 (382)
T ss_dssp             -TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTB---CCCHHHH--TCSEEEEETGGGTCC-
T ss_pred             -CCCeEEEEeccCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCc---ccCcccc--CCCEEEeehHHhcCC-
Confidence             36789999999999998776    89999999999999 9999997 5432   2222222  35666  46797542 


Q ss_pred             cceEEEEeCHHHHHhhcccc-------cccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 011777          327 LPLGAVVTTPEIANVMAQKI-------QFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDI  397 (477)
Q Consensus       327 ~pig~v~~~~~~~~~~~~~~-------~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~  397 (477)
                      .++|+++++++.  .+....       ....++.++..++++.++++.+.+  ++..++++++.+++.+.|++    .+.
T Consensus       204 ~g~G~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~  277 (382)
T 4eb5_A          204 KGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK----IEE  277 (382)
T ss_dssp             SSCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----STT
T ss_pred             CceEEEEEcccc--ccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh----CCC
Confidence            237999988763  122211       112334567777777788876644  34455566666666666544    322


Q ss_pred             ceeeec----cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC---------------------CCCEEEE
Q 011777          398 IGDVRG----RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL---------------------HGNVFRI  452 (477)
Q Consensus       398 ~~~v~g----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------~~~~iRi  452 (477)
                      +.....    .+.++++.+..         ....++.+.|.++||.+.++..                     ..+++||
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi  348 (382)
T 4eb5_A          278 SYLNGHPEKRLPNNVNVRFSY---------IEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLL  348 (382)
T ss_dssp             EEECSCSSSBCTTEEEEEETT---------SCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEE
T ss_pred             eEEeCCcccCCCCEEEEEeCC---------cCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEE
Confidence            221211    25566776621         0135688888899999987631                     1478999


Q ss_pred             eCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          453 KPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       453 ~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +++..++++|+++++++|++++++
T Consensus       349 ~~~~~~~~~~i~~~~~~l~~~~~~  372 (382)
T 4eb5_A          349 TLGRYNTDEDVDRLLEVLPGVIER  372 (382)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHH
Confidence            988888999999999999998764

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.93  E-value=2.2e-25  Score=229.99  Aligned_cols=345  Identities=13%  Similarity=0.074  Sum_probs=231.5

Q ss_pred             CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccc----c-c--cCChHHHHHHHHHHhhCCCCCCEEEEeCChH
Q 011777           93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT----T-I--YLHHAIADFAEALASKMPGNLKVVYFVNSGT  165 (477)
Q Consensus        93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~----~-~--~~~~~~~~l~~~La~~~~~~~~~v~~~~sGs  165 (477)
                      .++..|+|..      ++|+.++.+.+++.++++......    . .  ...+...+++++++++++.+.++|+|++|++
T Consensus        65 ~~~~iyld~~------~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t  138 (465)
T 3e9k_A           65 DENAIYFLGN------SLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALT  138 (465)
T ss_dssp             TCBCEECBTT------TSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHH
T ss_pred             CCCeEEecCC------ccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHH
Confidence            3466788743      467778889888888876532111    0 0  1124456789999999887778999999999


Q ss_pred             HHHHHHHHHHHhc-cCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHH
Q 011777          166 EANELAMLMARLS-TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHI  244 (477)
Q Consensus       166 eA~~~Al~~ar~~-~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i  244 (477)
                      +++..+++.+... .++++||+..++||+.................  ...+...  |......++      .++++++|
T Consensus       139 ~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~--~~~v~~~--~~~~~~~~d------~~~l~~~i  208 (465)
T 3e9k_A          139 VNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIE--ESMRMIK--PREGEETLR------IEDILEVI  208 (465)
T ss_dssp             HHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHH--HHEEEEC--CCTTCSSCC------HHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcce--eeeEEEe--cCCCCCccC------HHHHHHHH
Confidence            9999999876432 24567999999999865433221110000000  0001111  111111122      57888888


Q ss_pred             hccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eeccc
Q 011777          245 DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKG  322 (477)
Q Consensus       245 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~  322 (477)
                      +.. .+++++|+++++++++|.+.+    +++|.++|++||+++|+|++|+ +|.   ..+..+.++  .|++  +++|.
T Consensus       209 ~~~-~~~~~lv~~~~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~-~g~---~~~~~~~~~--~D~~~~s~~K~  277 (465)
T 3e9k_A          209 EKE-GDSIAVILFSGVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHA-VGN---VELYLHDWG--VDFACWCSYKY  277 (465)
T ss_dssp             HHH-GGGEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTT---SCCCHHHHT--CCEEEECSSST
T ss_pred             Hhc-CCCeEEEEEeCcccCcceeec----HHHHHHHHHHcCCEEEEEhhhh-cCC---cCCchhhcC--CCEEEECcccc
Confidence            632 147899999999999998877    8999999999999999999997 322   222233334  4555  56699


Q ss_pred             ccCc-cceEEEEeCHHHHHhhcccccc---c----------------------CCCCcHHHHHHHHHHHHhhch---hhH
Q 011777          323 IGNG-LPLGAVVTTPEIANVMAQKIQF---N----------------------TFGGNPVCSAGGLAVLRVIDK---ERR  373 (477)
Q Consensus       323 lg~G-~pig~v~~~~~~~~~~~~~~~~---~----------------------t~~~~~~~~aaa~a~l~~l~~---~~~  373 (477)
                      +++| .++|++++++++.+.+.....+   +                      ..+.|++++++..++++.+++   +++
T Consensus       278 l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~  357 (465)
T 3e9k_A          278 LNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKAL  357 (465)
T ss_dssp             TCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             cccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHH
Confidence            9654 5789999999987666532211   1                      014577888888888887754   567


Q ss_pred             HHHHHHHHHHHHHHHHHHHH---------hCCCce--eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeec
Q 011777          374 QAHCADVGSHLLGRLRTLQE---------RHDIIG--DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGK  442 (477)
Q Consensus       374 ~~~~~~~~~~l~~~L~~l~~---------~~~~~~--~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~  442 (477)
                      .++..++.+++.+.|+++..         ...++.  +.+..|.++++.+..+          ..++.+.|.++||++..
T Consensus       358 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~----------~~~l~~~L~~~Gi~v~~  427 (465)
T 3e9k_A          358 RKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVP----------NKDVFQELEKRGVVCDK  427 (465)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECCT----------TCCHHHHHHTTTEECEE
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecCC----------HHHHHHHHHHCCEEEec
Confidence            77888888888888877521         111111  2233588888877411          23578889999999875


Q ss_pred             cCCCCCEEEEeC-CCCCcHHHHHHHHHHHHHHHhh
Q 011777          443 GGLHGNVFRIKP-PMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       443 ~~~~~~~iRi~p-~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ..  .+++||+| ++.+|++||+++++.|++++++
T Consensus       428 ~~--~~~iRis~~~~~~t~edi~~~~~~l~~~l~~  460 (465)
T 3e9k_A          428 RN--PNGIRVAPVPLYNSFHDVYKFTNLLTSILDS  460 (465)
T ss_dssp             ET--TTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred             CC--CCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence            43  58999999 8999999999999999998864

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.93  E-value=7.7e-25  Score=221.31  Aligned_cols=315  Identities=11%  Similarity=0.012  Sum_probs=208.6

Q ss_pred             CCHHHHHHHHHHHhh-ccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCc
Q 011777          113 CHPDVLNAIFEQSKL-LQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAY  191 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~-~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~y  191 (477)
                      ..+++.+++..+... ..+....+.++...+++++++++++.  +.+++++||++|++.+++.+.  .+++.|++.+++|
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~~~i~~~sG~~a~~~~l~~~~--~~gd~vi~~~~~~  113 (398)
T 2rfv_A           38 VFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERG--EAGLATASGISAITTTLLTLC--QQGDHIVSASAIY  113 (398)
T ss_dssp             CCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC--CTTCEEEEESSSC
T ss_pred             ccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEEcCCCc
Confidence            456666666522221 22334455678899999999999865  377888899999999999763  3567899999999


Q ss_pred             cCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCc
Q 011777          192 HGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAP  271 (477)
Q Consensus       192 hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~  271 (477)
                      |+...........         .|...+.++..       |    ++++++.++    +++++|+++++++++|.+.+  
T Consensus       114 ~~~~~~~~~~~~~---------~g~~~~~v~~~-------d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~--  167 (398)
T 2rfv_A          114 GCTHAFLSHSMPK---------FGINVRFVDAA-------K----PEEIRAAMR----PETKVVYIETPANPTLSLVD--  167 (398)
T ss_dssp             HHHHHHHHTHHHH---------TTCEEEEECTT-------S----HHHHHHHCC----TTEEEEEEESSBTTTTBCCC--
T ss_pred             ccHHHHHHHHHHH---------cCCEEEEeCCC-------C----HHHHHHhcC----CCCeEEEEECCCCCCCcccC--
Confidence            9865543111000         12222222211       1    577887775    47899999999999998776  


Q ss_pred             hhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccC-ccce-EEEEeCHHHHH-hhcccccc
Q 011777          272 GYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGN-GLPL-GAVVTTPEIAN-VMAQKIQF  348 (477)
Q Consensus       272 ~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~-G~pi-g~v~~~~~~~~-~~~~~~~~  348 (477)
                        +++|.++|++||+++|+||+|+.+. .+ ...   .++....+.+++|.+++ |+|+ |++++++++++ .+....+.
T Consensus       168 --l~~i~~l~~~~~~~li~De~~~~~~-~~-~~~---~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~  240 (398)
T 2rfv_A          168 --IETVAGIAHQQGALLVVDNTFMSPY-CQ-QPL---QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKD  240 (398)
T ss_dssp             --HHHHHHHHHHTTCEEEEECTTTCTT-TC-CGG---GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHH
T ss_pred             --HHHHHHHHHHcCCEEEEECCCcccc-cC-Cch---hhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHh
Confidence              9999999999999999999998432 22 221   23444444678999986 7898 99999999876 55544343


Q ss_pred             c-CCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHH----------HhCCCcee----eeccceeEEEEEe
Q 011777          349 N-TFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQ----------ERHDIIGD----VRGRGLMVGMELV  413 (477)
Q Consensus       349 ~-t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~----------~~~~~~~~----v~g~g~~~~i~~~  413 (477)
                      . +.+.+++.++++.++++.+  +...++..++.+.+.+.|++..          ..++.+..    .++.|.++++++.
T Consensus       241 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~  318 (398)
T 2rfv_A          241 ITGGCMSPFNAWLTLRGVKTL--GIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIA  318 (398)
T ss_dssp             TTCCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEET
T ss_pred             CCCCCCCHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEc
Confidence            4 5678899999999988754  2334445555555655554420          01111111    1346888888873


Q ss_pred             eCCCCCCccHHHHHHHHHHHHHcCceeeccCC-------------------------CCCEEEEeCCCCCcHHHHHHHHH
Q 011777          414 TDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-------------------------HGNVFRIKPPMCFTKDDADFLVD  468 (477)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------------~~~~iRi~p~~~~t~e~i~~~l~  468 (477)
                      .       .......+.+.+...|+.+.+|+.                         ..+.+||+++...++++|+.+++
T Consensus       319 ~-------~~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~  391 (398)
T 2rfv_A          319 G-------GLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEH  391 (398)
T ss_dssp             T-------HHHHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHH
T ss_pred             C-------CHHHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHH
Confidence            1       112234455555555776655521                         14799999999999999999999


Q ss_pred             HHHHH
Q 011777          469 ALDYS  473 (477)
Q Consensus       469 ~l~~~  473 (477)
                      +|+++
T Consensus       392 al~~~  396 (398)
T 2rfv_A          392 AIRKA  396 (398)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            98764

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.93  E-value=2.1e-24  Score=221.95  Aligned_cols=344  Identities=14%  Similarity=0.081  Sum_probs=213.5

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAML  173 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~  173 (477)
                      .|+.||||.++.++.++   .+++.+++.    ...  ......+...+|+++|+++++.  +.+++++||++|++.+++
T Consensus        40 ~~~~ylD~~~~~~~~~~---~~~~~~a~~----~~~--~~y~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~al~  108 (456)
T 2ez2_A           40 SKDIYIDLLTDSGTNAM---SDKQWAGMM----MGD--EAYAGSENFYHLERTVQELFGF--KHIVPTHQGRGAENLLSQ  108 (456)
T ss_dssp             GGGCSEECSCSSSCCCC---CHHHHHHHT----TCC--CCSSSCHHHHHHHHHHHHHHCC--SEEEEESSHHHHHHHHHH
T ss_pred             cccceeeeccccCCccC---CHHHHHHhh----cch--hhcccChhHHHHHHHHHHHhCC--CcEEEeCCcHHHHHHHHH
Confidence            46789999887764422   567777664    111  1112356688999999999854  689999999999999998


Q ss_pred             HHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCC---C-cCCC--CCCCHHHHHHHHHHHHhcc
Q 011777          174 MARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPD---P-YHGS--FGSDAARYAQDLQDHIDFG  247 (477)
Q Consensus       174 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~--~~~~~~~~~~~le~~i~~~  247 (477)
                      .+.  .+++  |+..++||+.+.......+...          ..++...   + ...+  ++.|    .++|+++++..
T Consensus       109 ~l~--~~gd--i~~~~~~~~~~~~~~~~~G~~~----------~~v~~~~~~~~~~~~~~~~~~d----~~~l~~~i~~~  170 (456)
T 2ez2_A          109 LAI--KPGQ--YVAGNMYFTTTRYHQEKNGAVF----------VDIVRDEAHDAGLNIAFKGDID----LKKLQKLIDEK  170 (456)
T ss_dssp             HHC--CTTC--EEEESSCCHHHHHHHHHTTCEE----------EECBCGGGGCTTCCCSCTTCBC----HHHHHHHHHHH
T ss_pred             HhC--CCCC--EeccccccchhHHHHHHcCCEE----------EEecccccccccccccccCCCC----HHHHHHHHHhc
Confidence            773  2333  7788899876544443332211          1111100   0 0001  1212    57888888632


Q ss_pred             CCCCeeEEEec-ccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccC----------ccCCCCCCc-cc-cccCCCc
Q 011777          248 TSGKVAGFIAE-TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG----------FGRTGSHYW-GF-ETQGVIP  314 (477)
Q Consensus       248 ~~~~~a~vi~e-pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g----------fgr~G~~~~-~~-~~~gv~p  314 (477)
                      ....+++|+++ |+|+++| .+.+.+++++|.++|++||++||+||+|+.          +.+.| ..+ .+ +..+..+
T Consensus       171 t~~~~~~v~l~~p~n~ptG-~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g-~~~~~~~~~~~~~~  248 (456)
T 2ez2_A          171 GAENIAYICLAVTVNLAGG-QPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFEN-KSIAEIVHEMFSYA  248 (456)
T ss_dssp             CGGGEEEEEEESSBTTTTS-BCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTT-SCHHHHHHHHHTTC
T ss_pred             cccceeEEEEeccCCCCCC-ccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCC-cchhhhhhhhcccC
Confidence            22346888888 5555778 567899999999999999999999999985          44555 221 10 1123446


Q ss_pred             ceeeec-ccccC-ccceEEEEe-CHHHHHhhccccc----ccCCC-CcHHHHHH-HHHHHHhhchhhHHHHHHHHHHHHH
Q 011777          315 DIVTMA-KGIGN-GLPLGAVVT-TPEIANVMAQKIQ----FNTFG-GNPVCSAG-GLAVLRVIDKERRQAHCADVGSHLL  385 (477)
Q Consensus       315 Divt~s-K~lg~-G~pig~v~~-~~~~~~~~~~~~~----~~t~~-~~~~~~aa-a~a~l~~l~~~~~~~~~~~~~~~l~  385 (477)
                      |++++| |.+++ | +.|++++ ++++++.+.....    ..++. .++..+++ +.+.++.++ +++.++.+++.++++
T Consensus       249 d~~~~S~kk~~~~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~~~~~~~~~~l~  326 (456)
T 2ez2_A          249 DGCTMSGKKDCLVN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYIEHRVKQVRYLG  326 (456)
T ss_dssp             SEEEEETTTTTCCS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHH
T ss_pred             CEEEEeCcccCCCC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH-HHHHHHHHHHHHHHH
Confidence            888774 55554 4 5799998 6888776643211    11222 24334444 555555443 456677777788888


Q ss_pred             HHHHHHHHhCCCceeeeccceeEEEEEee--CCCCCCccHHHHHHHHHHH-HHcCceeeccCC---------------CC
Q 011777          386 GRLRTLQERHDIIGDVRGRGLMVGMELVT--DRKEKTPAKAETAVLFEKL-RELGVLVGKGGL---------------HG  447 (477)
Q Consensus       386 ~~L~~l~~~~~~~~~v~g~g~~~~i~~~~--~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~---------------~~  447 (477)
                      +.|+++  .++.+.  +..|.++++.+..  +...  ........+.+.| .++||.+.+.+.               ..
T Consensus       327 ~~L~~~--g~~~~~--p~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~  400 (456)
T 2ez2_A          327 DKLKAA--GVPIVE--PVGGHAVFLDARRFCEHLT--QDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKL  400 (456)
T ss_dssp             HHHHHT--TCCBCS--SCCSSEEEEEHHHHTTTSC--GGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSC
T ss_pred             HHHhcC--CCcccc--CCCceEEEEEhHHhcCCCC--hhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCC
Confidence            887763  232221  2346677776532  1100  1110134456666 678998654221               13


Q ss_pred             CEEEEeCCCC-CcHHHHHHHHHHHHHHHhh
Q 011777          448 NVFRIKPPMC-FTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       448 ~~iRi~p~~~-~t~e~i~~~l~~l~~~l~~  476 (477)
                      +++||+++.. ++++++++++++|++++++
T Consensus       401 ~~iRis~~~~~~t~e~i~~~~~~l~~~l~~  430 (456)
T 2ez2_A          401 ETVRLTIPRRVYTYAHMDVVADGIIKLYQH  430 (456)
T ss_dssp             CEEEEECCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            7899999987 8999999999999998764

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.93  E-value=6.5e-25  Score=224.03  Aligned_cols=346  Identities=16%  Similarity=0.157  Sum_probs=209.1

Q ss_pred             CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-cccccc-----CChHHHHHHHHHHhhCCCCCCEEEEeCChHH
Q 011777           93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-HATTIY-----LHHAIADFAEALASKMPGNLKVVYFVNSGTE  166 (477)
Q Consensus        93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-~~~~~~-----~~~~~~~l~~~La~~~~~~~~~v~~~~sGse  166 (477)
                      .+|..|||+.++.      +.+|+|++++.+++.... +....|     ..+...+++++|+++++.+.++|+|++||++
T Consensus        16 ~~~~~~Ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~   89 (432)
T 3a9z_A           16 PNRKVYMDYNATT------PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTE   89 (432)
T ss_dssp             --CCEECBTTTCC------CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHH
T ss_pred             CCCcEEeeCCccC------CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHH
Confidence            3578899976543      579999999999987632 111112     1234578999999998776678999999999


Q ss_pred             HHHHHHHHHHh-c-----cCCceEEEEccCccCCcccccccccCC-C---CCCCCCCCCeeeecCCCCc-CCCCCCCHHH
Q 011777          167 ANELAMLMARL-S-----TGNLGMIALRNAYHGGSSGTIGLTALN-T---WKYPIPQGEIHHVVNPDPY-HGSFGSDAAR  235 (477)
Q Consensus       167 A~~~Al~~ar~-~-----~~~~~ii~~~~~yhG~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  235 (477)
                      |++.+++.+.. +     .++++|+++.++||++.....+..... .   +.......|...+.+|... ...++     
T Consensus        90 a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d-----  164 (432)
T 3a9z_A           90 SNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVE-----  164 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCC-----
T ss_pred             HHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcC-----
Confidence            99999998741 1     256789999999998632221111000 0   0000000133333322211 11122     


Q ss_pred             HHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhC----------cEEEEcCcccCccCCCCCCc
Q 011777          236 YAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAG----------GVCIADEVQTGFGRTGSHYW  305 (477)
Q Consensus       236 ~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g----------illI~DEv~~gfgr~G~~~~  305 (477)
                       +++|++.++    +++++|+++++++++|.+.+    +++|.++|++||          +++|+||+|. +|...   +
T Consensus       165 -~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~~-~~~~~---~  231 (432)
T 3a9z_A          165 -VEDILAAVR----PTTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQA-LGKRR---V  231 (432)
T ss_dssp             -HHHHHHTCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTT-TTTSC---C
T ss_pred             -HHHHHHhcc----CCceEEEEECcccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchhh-hCCcc---c
Confidence             477777765    46889999999999998877    789999999999          9999999995 54322   2


Q ss_pred             cccccCCCcceee--ecccccCccceEEEEeCHHH-HHhhcccc-------cccCCCCcHHHHHHHHHHHHhhch--hhH
Q 011777          306 GFETQGVIPDIVT--MAKGIGNGLPLGAVVTTPEI-ANVMAQKI-------QFNTFGGNPVCSAGGLAVLRVIDK--ERR  373 (477)
Q Consensus       306 ~~~~~gv~pDivt--~sK~lg~G~pig~v~~~~~~-~~~~~~~~-------~~~t~~~~~~~~aaa~a~l~~l~~--~~~  373 (477)
                      ...  ...+|+++  ++|.+  |+++|++++++++ ...+....       ...+++.|+.+++++.++++.+++  ++.
T Consensus       232 ~~~--~~~~d~~~~s~~K~~--g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~  307 (432)
T 3a9z_A          232 DVE--DLGVDFLTIVGHKFY--GPRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETY  307 (432)
T ss_dssp             CHH--HHCCSEEEEEGGGTT--CCSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Chh--hcCCCEEEEehhHhc--CCcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHH
Confidence            222  22467664  58976  4679999999875 33333221       122356788888888888887654  566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCc--ee---eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeecc-----
Q 011777          374 QAHCADVGSHLLGRLRTLQERHDII--GD---VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG-----  443 (477)
Q Consensus       374 ~~~~~~~~~~l~~~L~~l~~~~~~~--~~---v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-----  443 (477)
                      .++++++.+++.+.|+++.. ..+.  ..   .+..+.+..+.+....    ..   ...+.+.+  +|+++..+     
T Consensus       308 ~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~l--~~i~~~~G~~~~~  377 (432)
T 3a9z_A          308 EAHMRDIRDYLEERLEAEFG-KRIHLNSRFPGVERLPNTCNFSIQGSQ----LR---GYMVLAQC--QTLLASVGASCHS  377 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHG-GGEEESSCCTTCCBCTTEEEEEECSTT----CC---HHHHHHHC--SSEECBSSCGGGG
T ss_pred             HHHHHHHHHHHHHHHHhccC-CcEEEeCCCCcccCCCCEEEEEeCCCC----Cc---HHHHHHHh--cCeEEeccccccC
Confidence            77888888888888877521 1110  10   1234556677764311    11   12333333  24433322     


Q ss_pred             -------------CC----CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          444 -------------GL----HGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       444 -------------~~----~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                                   +.    ..+++||+++..+|++|+++++++|++++++
T Consensus       378 ~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~  427 (432)
T 3a9z_A          378 DHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQ  427 (432)
T ss_dssp             GGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence                         10    1378999999888999999999999998764

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.93  E-value=5.5e-25  Score=225.91  Aligned_cols=339  Identities=13%  Similarity=0.096  Sum_probs=203.2

Q ss_pred             EEeecCCcccccCCCCCHHHHHHHHHHHhhcc----ccccccCC-hHHHHHHHHHHhhC-CCC-----CCEEEE--eCCh
Q 011777           98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ----HATTIYLH-HAIADFAEALASKM-PGN-----LKVVYF--VNSG  164 (477)
Q Consensus        98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~----~~~~~~~~-~~~~~l~~~La~~~-~~~-----~~~v~~--~~sG  164 (477)
                      .+||..|.+.-  .+++|.+.+++.+++.+..    .....|.. ....++++.+++++ +.+     .++|++  |+||
T Consensus        51 ~i~l~~g~~~d--~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~gg  128 (448)
T 3meb_A           51 KVNLGVGAYRD--ESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSG  128 (448)
T ss_dssp             CEEESSCCCCC--TTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHH
T ss_pred             eEEeecccccC--CCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcH
Confidence            46666655421  1234444445444422211    11222322 33456666666665 433     468999  9999


Q ss_pred             HHHHHHHHHHHHhccCCceEEEEccCccCCccccc----ccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHH
Q 011777          165 TEANELAMLMARLSTGNLGMIALRNAYHGGSSGTI----GLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDL  240 (477)
Q Consensus       165 seA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  240 (477)
                      ++|++.++.+.....+++.|++.+++|+++.....    ..+.           .+..++..+.. ..+.-|    ++++
T Consensus       129 t~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~-----------~v~~~~~~~~~-~~~~~d----~e~l  192 (448)
T 3meb_A          129 TGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKV-----------PYKEYTYLRKD-GELEID----FSNT  192 (448)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTS-----------CCEEECCBCTT-SCSSBC----HHHH
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCC-----------eEEEEeccccc-cCCCcC----HHHH
Confidence            99999976655445567899999999987755443    2211           11122211110 011112    5788


Q ss_pred             HHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC--CCcccccc-CCCcc--
Q 011777          241 QDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS--HYWGFETQ-GVIPD--  315 (477)
Q Consensus       241 e~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~--~~~~~~~~-gv~pD--  315 (477)
                      ++.++.. +.+++++++...+|++| ..++.+.+++|.++|++||+++|+||+|.+|++.+.  ..+++..+ +..++  
T Consensus       193 ~~~l~~~-~~~~~~v~~~~p~NPtG-~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i  270 (448)
T 3meb_A          193 KKDIQSA-PEKSIFLFHACAHNPSG-IDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVL  270 (448)
T ss_dssp             HHHHHHS-CTTCEEEEESSSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEE
T ss_pred             HHHHHhC-CCCcEEEEeCCCCCCCC-cCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEE
Confidence            8888642 23455655555566777 456888899999999999999999999999987541  12222221 22334  


Q ss_pred             -eeeeccccc-CccceEEE--Ee--------C-H----HHHHhhcccccccCCCCcHHHHHHHHHHHHhhc--------h
Q 011777          316 -IVTMAKGIG-NGLPLGAV--VT--------T-P----EIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID--------K  370 (477)
Q Consensus       316 -ivt~sK~lg-~G~pig~v--~~--------~-~----~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~--------~  370 (477)
                       +.+|||.+| .|+|+||+  ++        + +    ++++.+.......+.+.+.+++.++.++|+..+        -
T Consensus       271 ~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~  350 (448)
T 3meb_A          271 VAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNV  350 (448)
T ss_dssp             EEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             EEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHHH
Confidence             457999999 59999998  66        4 4    566655544445566777888888888876421        1


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCC------ceee-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeecc
Q 011777          371 ERRQAHCADVGSHLLGRLRTLQERHDI------IGDV-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG  443 (477)
Q Consensus       371 ~~~~~~~~~~~~~l~~~L~~l~~~~~~------~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~  443 (477)
                      ++..++++++++++.+.|+++.  .+.      +... +..|++.++.+.            ...+...+.++||++.+|
T Consensus       351 ~~~~~~~~~~r~~l~~~L~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~ll~~~gV~v~~G  416 (448)
T 3meb_A          351 KEMSARIHRMRSLLHASLAKRK--TPGPGSKGTWDHILTAIGMFTFTGLT------------PEHVDYLKEKWSIYLVKA  416 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT--CCCSTTTCCCTHHHHCCSSEEECCCC------------HHHHHHHHHHHCEEECSG
T ss_pred             HHHHHHHHHHHHHHHHHHHhhC--CCCcCcccccceeCCCceEEEecCCC------------HHHHHHHHHhCCEEEeCC
Confidence            2344555556666666655431  121      2122 233455554331            122333446679999986


Q ss_pred             CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          444 GLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       444 ~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .     .||+.. .+++++|++++++|++++++
T Consensus       417 ~-----gRis~a-~~~~~~i~~~~~~l~~~l~~  443 (448)
T 3meb_A          417 G-----GRMSMC-GLTESNCDYVAEAIHDAVTK  443 (448)
T ss_dssp             G-----GEEEGG-GCCTTTHHHHHHHHHHHHHH
T ss_pred             C-----cEEEEe-cCCHHHHHHHHHHHHHHHHh
Confidence            3     288764 34778899999999999865

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.93  E-value=2.1e-24  Score=218.18  Aligned_cols=321  Identities=16%  Similarity=0.075  Sum_probs=214.3

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMA  175 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~a  175 (477)
                      +.||||..+...  ++   |++++++.++++...+    +..+...++++.|+++++.  +.+++++||++|++.+++.+
T Consensus        30 ~~~id~~~~~~~--~~---~~v~~a~~~~~~~~~y----~~~~~~~~l~~~la~~~~~--~~~v~~~~Gt~a~~~~l~~~   98 (399)
T 2oga_A           30 VPFLDLKAAYEE--LR---AETDAAIARVLDSGRY----LLGPELEGFEAEFAAYCET--DHAVGVNSGMDALQLALRGL   98 (399)
T ss_dssp             BCSCCHHHHHHH--TH---HHHHHHHHHHHHHTCC----SSSHHHHHHHHHHHHHTTS--SEEEEESCHHHHHHHHHHHT
T ss_pred             CcccccCcCCCC--CC---HHHHHHHHHHHhcCCC----CCchhHHHHHHHHHHHHCC--CeEEEecCHHHHHHHHHHHh
Confidence            679999887764  22   8999999998876322    2346688999999999965  47889999999999999876


Q ss_pred             HhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEE
Q 011777          176 RLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGF  255 (477)
Q Consensus       176 r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~v  255 (477)
                      + ..+++.|++..++||+........             |...+.++... ..+..|    ++++++.++    .++++|
T Consensus        99 ~-~~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~-~~~~~d----~~~l~~~i~----~~~~~v  155 (399)
T 2oga_A           99 G-IGPGDEVIVPSHTYIASWLAVSAT-------------GATPVPVEPHE-DHPTLD----PLLVEKAIT----PRTRAL  155 (399)
T ss_dssp             T-CCTTCEEEEESSSCTHHHHHHHHT-------------TCEEEEECBCS-SSSSBC----HHHHHHHCC----TTEEEE
T ss_pred             C-CCCcCEEEECCCccHHHHHHHHHC-------------CCEEEEEecCC-CCCCcC----HHHHHHhcC----CCCeEE
Confidence            3 235678999999999854433221             11222211110 011112    477888775    367777


Q ss_pred             EecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCcc-CCCCCCccccccCCCcceeee----cccccC-ccce
Q 011777          256 IAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG-RTGSHYWGFETQGVIPDIVTM----AKGIGN-GLPL  329 (477)
Q Consensus       256 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfg-r~G~~~~~~~~~gv~pDivt~----sK~lg~-G~pi  329 (477)
                      +++   +++|.+.+    +++|.++|++||+++|+||+|+.+. ..+      ...+..+|++++    ||.+++ | +.
T Consensus       156 ~~~---n~tG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~------~~~~~~~di~~~S~~~sK~~~~~G-~~  221 (399)
T 2oga_A          156 LPV---HLYGHPAD----MDALRELADRHGLHIVEDAAQAHGARYRG------RRIGAGSSVAAFSFYPGKNLGCFG-DG  221 (399)
T ss_dssp             CCB---CGGGCCCC----HHHHHHHHHHHTCEECEECTTCTTCEETT------EETTCTTCEEEEECCTTSSSCCSS-CC
T ss_pred             EEe---CCcCCccC----HHHHHHHHHHcCCEEEEECcccccCccCC------eecccccCEEEEeCCCCccCCcCC-ce
Confidence            754   34565554    8999999999999999999997331 223      122334688876    499997 8 89


Q ss_pred             EEEEeC-HHHHHhhccccc------------ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCC
Q 011777          330 GAVVTT-PEIANVMAQKIQ------------FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHD  396 (477)
Q Consensus       330 g~v~~~-~~~~~~~~~~~~------------~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~  396 (477)
                      |+++++ +++++.+.....            +.++..+++.++++.++++.++  ++.++.+++.+++.+.|.++. ...
T Consensus       222 g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~-g~~  298 (399)
T 2oga_A          222 GAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLD--SWNGRRSALAAEYLSGLAGLP-GIG  298 (399)
T ss_dssp             EEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHTTTCT-TCB
T ss_pred             EEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCC-Ccc
Confidence            999986 888776643211            2234568999999888887653  355666666666666665431 111


Q ss_pred             CceeeeccceeE--EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC-------------------------CCE
Q 011777          397 IIGDVRGRGLMV--GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH-------------------------GNV  449 (477)
Q Consensus       397 ~~~~v~g~g~~~--~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-------------------------~~~  449 (477)
                      .. .....+..+  .+.+...         ...++.+.|.++||.+.++...                         .++
T Consensus       299 ~~-~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  368 (399)
T 2oga_A          299 LP-VTAPDTDPVWHLFTVRTE---------RRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQV  368 (399)
T ss_dssp             CC-CCCTTEECCCSSEEEECS---------SHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHE
T ss_pred             cc-CCCCCCcceeEEEEEECC---------CHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCE
Confidence            11 111122222  2333211         1457888999999999764210                         257


Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          450 FRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       450 iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      +||+++..+|++|+++++++|+++++++
T Consensus       369 lRi~~~~~~t~edi~~~~~~l~~~~~~l  396 (399)
T 2oga_A          369 LSLPIGPHLERPQALRVIDAVREWAERV  396 (399)
T ss_dssp             EEECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             EEccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999988753

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.93  E-value=8.8e-24  Score=212.63  Aligned_cols=296  Identities=18%  Similarity=0.126  Sum_probs=201.3

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      |....+.++...+++++|+++++.+  ..++++||++|++.+++.+.  .++++|++..++||+..........      
T Consensus        44 ~~~~~~~~~~~~~l~~~la~~~~~~--~~i~~~sGt~a~~~~~~~~~--~~g~~vl~~~~~~~~~~~~~~~~~~------  113 (386)
T 1cs1_A           44 HDYSRRGNPTRDVVQRALAELEGGA--GAVLTNTGMSAIHLVTTVFL--KPGDLLVAPHDCYGGSYRLFDSLAK------  113 (386)
T ss_dssp             CSBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC--CTTCEEEEETTCCHHHHHHHHHHHT------
T ss_pred             cceeCCCCccHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHh--CCCCEEEEecCCcHhHHHHHHHHHH------
Confidence            3344567788889999999998764  44555778999999999763  3667899999999974332111100      


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                         ..+.....++.      + |    .+++++.++    +++++|++++++|++|.+.+    +++|.++|++||+++|
T Consensus       114 ---~~g~~~~~~~~------~-d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li  171 (386)
T 1cs1_A          114 ---RGCYRVLFVDQ------G-D----EQALRAALA----EKPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSV  171 (386)
T ss_dssp             ---TTSCEEEEECT------T-C----HHHHHHHHH----TCCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEE
T ss_pred             ---hcCCEEEEeCC------C-C----HHHHHHhhc----cCCcEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEE
Confidence               01222222221      1 1    578888887    36789999999999998776    9999999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCcceeeecccccC-ccce-EEEEeCH-HHHHhhcccccccCCCCcHHHHHHHHHHHH
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGN-GLPL-GAVVTTP-EIANVMAQKIQFNTFGGNPVCSAGGLAVLR  366 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~-G~pi-g~v~~~~-~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~  366 (477)
                      +||+|+++....  .  . .++....+.+++|.+++ |.++ |++++++ ++++.+....+..+.+.|+++++++.++++
T Consensus       172 ~De~~~~~~~~~--~--~-~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~  246 (386)
T 1cs1_A          172 VDNTFLSPALQN--P--L-ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR  246 (386)
T ss_dssp             EECTTTCTTTCC--G--G-GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHT
T ss_pred             EECCCcccccCC--c--c-ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhccc
Confidence            999999775432  1  1 23433344478999986 5676 9999986 788877665554556678998888877776


Q ss_pred             hhchhhHHHHHHHHHHHHHHHHHHHHH---h-CCCce----------eeeccceeEEEEEeeCCCCCCccHHHHHHHHHH
Q 011777          367 VIDKERRQAHCADVGSHLLGRLRTLQE---R-HDIIG----------DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEK  432 (477)
Q Consensus       367 ~l~~~~~~~~~~~~~~~l~~~L~~l~~---~-~~~~~----------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~  432 (477)
                      .+  +...++..++.+++.+.|+++..   . ++.+.          ..++.|.++.+++...          ...+.+.
T Consensus       247 ~~--~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~  314 (386)
T 1cs1_A          247 TL--VPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD----------EQTLRRF  314 (386)
T ss_dssp             TH--HHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC----------HHHHHHH
T ss_pred             HH--HHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC----------HHHHHHH
Confidence            43  22344555555555555544210   0 11111          1245688888887321          2456778


Q ss_pred             HHHcCceeecc--C--------------------------CCCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          433 LRELGVLVGKG--G--------------------------LHGNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       433 l~~~Gv~v~~~--~--------------------------~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      |.++||++...  +                          ...+++||++++..++++++.+.+.|+++.
T Consensus       315 l~~~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~~  384 (386)
T 1cs1_A          315 LGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAAN  384 (386)
T ss_dssp             HHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred             HHhCCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence            88899988631  1                          124799999999999999999988888764

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.92  E-value=8e-24  Score=213.82  Aligned_cols=333  Identities=12%  Similarity=0.080  Sum_probs=210.7

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHh-hccc--cccc-cC-ChHHHH----HHHHHHhhCCCCCCEEEEeCChHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSK-LLQH--ATTI-YL-HHAIAD----FAEALASKMPGNLKVVYFVNSGTE  166 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~-~~~~--~~~~-~~-~~~~~~----l~~~La~~~~~~~~~v~~~~sGse  166 (477)
                      +.++|+.++..   +   +|+|++|+.+++. ...+  .... +. .+...+    ++++++++++.+ ...++++||++
T Consensus        24 ~~~~~~~~~~~---~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~-~~~i~~~sGt~   96 (405)
T 2vi8_A           24 AKIELIASENF---V---SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAE-HANVQPHSGAQ   96 (405)
T ss_dssp             HSEECCTTCCC---C---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS-EEECCCSSHHH
T ss_pred             cceeeccCccc---C---CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCC-ceEEEecCcHH
Confidence            34677755432   2   8999999999885 3211  1111 11 233334    446899988664 33455678899


Q ss_pred             HHHHHHHHHHhccCCceEEEEccCccCCcccc--cccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHH
Q 011777          167 ANELAMLMARLSTGNLGMIALRNAYHGGSSGT--IGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHI  244 (477)
Q Consensus       167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i  244 (477)
                      |++.+++.+.  .+++.|++..++|++.....  ....+.          ++..+.++... ..+..|    ++++++.+
T Consensus        97 a~~~a~~~~~--~~gd~Vl~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~-~~~~~d----~~~l~~~i  159 (405)
T 2vi8_A           97 ANMAVYFTVL--EHGDTVLGMNLSHGGHLTHGSPVNFSGV----------QYNFVAYGVDP-ETHVID----YDDVREKA  159 (405)
T ss_dssp             HHHHHHHHHC--CTTCEEEEECGGGTCCTTTTCTTSHHHH----------HSEEEEECBCT-TTCSBC----HHHHHHHH
T ss_pred             HHHHHHHHhc--CCCCEEEEecccccchhcccchhhhccc----------eeEEEeccccc-ccCCcC----HHHHHHHH
Confidence            9999999773  35678888888765543211  111111          01112211100 011112    57888888


Q ss_pred             hccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCC-Cccee--eecc
Q 011777          245 DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV-IPDIV--TMAK  321 (477)
Q Consensus       245 ~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv-~pDiv--t~sK  321 (477)
                      +.   .++++|++.|.+.  |..    ..+++|.++|++||+++|+||+|+ +|+.+.....   .++ .+|++  +++|
T Consensus       160 ~~---~~~~~v~~~~~~~--~~~----~~l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~~~---~~~~~~di~~~s~sK  226 (405)
T 2vi8_A          160 RL---HRPKLIVAAAAAY--PRI----IDFAKFREIADEVGAYLMVDMAHI-AGLVAAGLHP---NPVPYAHFVTTTTHK  226 (405)
T ss_dssp             HH---HCCSEEEECCSSC--CSC----CCHHHHHHHHHHHTCEEEEECTTT-HHHHHTTSSC---CSTTTCSEEEEESSS
T ss_pred             Hh---cCCeEEEEeCCCC--Ccc----CCHHHHHHHHHHcCCEEEEEcccc-ccccccCcCC---CccccCCEEEEeccc
Confidence            62   1457777765332  322    238999999999999999999998 5443211111   111 46776  7899


Q ss_pred             cccCccceEEEEeCHHHHHhhcccccccCCCC-cHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 011777          322 GIGNGLPLGAVVTTPEIANVMAQKIQFNTFGG-NPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDI  397 (477)
Q Consensus       322 ~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~-~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~  397 (477)
                      +++++.. |++++++++++.+......+++++ ++..++++.++++.+..   ++..++++++++++.+.|+++  ....
T Consensus       227 ~~~g~~g-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~  303 (405)
T 2vi8_A          227 TLRGPRG-GMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE--GFTL  303 (405)
T ss_dssp             TTCCCSC-EEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TCEE
T ss_pred             cCCCCCC-eEEEEcHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC--CCeE
Confidence            9985444 999999999887765433344444 67777777788876543   566778888888888888765  2221


Q ss_pred             ceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC--------CCCCEEEEeCCC----CCcHHHHHH
Q 011777          398 IGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG--------LHGNVFRIKPPM----CFTKDDADF  465 (477)
Q Consensus       398 ~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------~~~~~iRi~p~~----~~t~e~i~~  465 (477)
                      .. ..+.+.++++.+....       .....+.+.|.++||.+.++.        ...+++||+++.    .++++|+++
T Consensus       304 ~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~  375 (405)
T 2vi8_A          304 VS-GGTDNHLLLVDLRPQQ-------LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDE  375 (405)
T ss_dssp             GG-GSCSSSEEEEECGGGT-------CCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHH
T ss_pred             ec-CCCCceEEEEEccCCC-------CCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHH
Confidence            11 1235778888773210       013567788889999998753        124689999886    578999999


Q ss_pred             HHHHHHHHHhh
Q 011777          466 LVDALDYSMSK  476 (477)
Q Consensus       466 ~l~~l~~~l~~  476 (477)
                      ++++|++++++
T Consensus       376 ~~~~l~~~~~~  386 (405)
T 2vi8_A          376 IAAIIGLVLKN  386 (405)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhc
Confidence            99999998864

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.92  E-value=2.4e-23  Score=209.94  Aligned_cols=289  Identities=16%  Similarity=0.071  Sum_probs=201.2

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      |....+.++...+++++|+++++.  +.+++++||++|++.+++.+.  .++++||+.++.||+...........     
T Consensus        58 ~~y~r~~~~~~~~l~~~la~~~g~--~~~~~~~sGt~A~~~al~~~~--~~gd~Vi~~~~~y~~~~~~~~~~~~~-----  128 (392)
T 3qhx_A           58 YEYARTGNPTRTALEAALAAVEDA--AFGRAFSSGMAAADCALRAML--RPGDHVVIPDDAYGGTFRLIDKVFTG-----  128 (392)
T ss_dssp             BCBTTTCCHHHHHHHHHHHHHTTC--SEEEEESSHHHHHHHHHHHHC--CTTCEEEEETTCCHHHHHHHHHTGGG-----
T ss_pred             ccccCCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEEeCCCcchHHHHHHHHHHh-----
Confidence            445567788899999999999865  479999999999999999763  46788999999998754332111100     


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                          .|+....++..       |    +++++++++    +++++|++|+++|++|.+.+    +++|.++|++||+++|
T Consensus       129 ----~g~~~~~v~~~-------d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~g~~li  185 (392)
T 3qhx_A          129 ----WNVEYTPVALA-------D----LDAVRAAIR----PTTRLIWVETPTNPLLSIAD----IAGIAQLGADSSAKVL  185 (392)
T ss_dssp             ----GTCEEEEECTT-------C----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEE
T ss_pred             ----cCcEEEEeCCC-------C----HHHHHHhhC----CCCeEEEEECCCCCCcEEec----HHHHHHHHHHcCCEEE
Confidence                12222222211       1    578888876    47899999999999998776    9999999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCcceee--ecccccC-c-cceEEEEeC-HHHHHhhcccccccCCCCcHHHHHHHHHH
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGN-G-LPLGAVVTT-PEIANVMAQKIQFNTFGGNPVCSAGGLAV  364 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~  364 (477)
                      +||+|+.+ ..      .+..+..+|+++  ++|.+++ | +++|+++++ +++.+.+....+..++..+++.+++++..
T Consensus       186 ~D~~~~~~-~~------~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~  258 (392)
T 3qhx_A          186 VDNTFASP-AL------QQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRG  258 (392)
T ss_dssp             EECTTTCT-TT------CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred             EECCCccc-cc------CChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhh
Confidence            99999732 11      122344567776  8899996 5 789999998 68888776655556677889999888888


Q ss_pred             HHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee------------------eccceeEEEEEeeCCCCCCccHHHH
Q 011777          365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV------------------RGRGLMVGMELVTDRKEKTPAKAET  426 (477)
Q Consensus       365 l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v------------------~g~g~~~~i~~~~~~~~~~~~~~~~  426 (477)
                      ++.+.  ...++..++.+++.+.|.+    ++.+..+                  +|.|.++++++..       .....
T Consensus       259 l~~l~--~~~~~~~~~~~~l~~~L~~----~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~-------~~~~~  325 (392)
T 3qhx_A          259 LKTLV--LRMQRHSENAAAVAEFLAE----HPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRA-------GRTAA  325 (392)
T ss_dssp             HTTHH--HHHHHHHHHHHHHHHHHHT----CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT-------CHHHH
T ss_pred             hhHHH--HHHHHHHHHHHHHHHHHhc----CCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCC-------cHHHH
Confidence            76543  2345555556666555543    3333222                  5668899999842       12345


Q ss_pred             HHHHHHHHHcCceeeccC----------------------CCCCEEEEeCCCCCcHHHHHHHHHHH
Q 011777          427 AVLFEKLRELGVLVGKGG----------------------LHGNVFRIKPPMCFTKDDADFLVDAL  470 (477)
Q Consensus       427 ~~~~~~l~~~Gv~v~~~~----------------------~~~~~iRi~p~~~~t~e~i~~~l~~l  470 (477)
                      ..+.+.|...|+.+..|+                      ...+.|||+.....++++|+.+.++|
T Consensus       326 ~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al  391 (392)
T 3qhx_A          326 EQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL  391 (392)
T ss_dssp             HHHHHHCSSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred             HHHHHhCCCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence            667777766666654432                      12467999888776666666655554

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.92  E-value=3.7e-23  Score=210.01  Aligned_cols=305  Identities=14%  Similarity=0.085  Sum_probs=205.4

Q ss_pred             cCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEc
Q 011777          109 SCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALR  188 (477)
Q Consensus       109 ~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~  188 (477)
                      .++|.+|+.++++.+  ....+....+.++...+++++++++++.  +.++|++||++|++.+++.+  ..++++|++..
T Consensus        29 ~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~l~~~la~~~g~--~~~~~~~~gt~a~~~al~~l--~~~gd~vi~~~  102 (412)
T 2cb1_A           29 AYGFKTLEEGQERFA--TGEGYVYARQKDPTAKALEERLKALEGA--LEAVVLASGQAATFAALLAL--LRPGDEVVAAK  102 (412)
T ss_dssp             BCCCSSHHHHHHHHH--HCCSCSBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHTT--CCTTCEEEEET
T ss_pred             eeecCChHHHHHHhc--cccCcCcCCCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHH--hCCCCEEEEeC
Confidence            467788776666544  2233434444567899999999999865  58999999999999999865  33567899999


Q ss_pred             cCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeee
Q 011777          189 NAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVE  268 (477)
Q Consensus       189 ~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~  268 (477)
                      +.|++..........         ..|+....++.        |    .++++++++    +++++|+++++++++|.+.
T Consensus       103 ~~~~~~~~~~~~~~~---------~~g~~~~~~~~--------~----~~~l~~~i~----~~~~~v~~~~~~n~~G~~~  157 (412)
T 2cb1_A          103 GLFGQTIGLFGQVLS---------LMGVTVRYVDP--------E----PEAVREALS----AKTRAVFVETVANPALLVP  157 (412)
T ss_dssp             TCCHHHHHHHHHTTT---------TTTCEEEEECS--------S----HHHHHHHCC----TTEEEEEEESSCTTTCCCC
T ss_pred             CCchhHHHHHHHHHH---------HcCCEEEEECC--------C----HHHHHHHhc----cCCeEEEEeCCCCCCcccc
Confidence            999864332211000         01333222221        1    478888775    4789999999999999877


Q ss_pred             CCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccC-ccceEEEEeCH---------
Q 011777          269 LAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGN-GLPLGAVVTTP---------  336 (477)
Q Consensus       269 ~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G~pig~v~~~~---------  336 (477)
                      +    +++|.++|++||+++|+||+|++++... ..     .+..+|+++  ++|.+++ |.|+|++++.+         
T Consensus       158 ~----l~~i~~l~~~~~~~li~D~~~~~~~~~~-~~-----~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~  227 (412)
T 2cb1_A          158 D----LEALATLAEEAGVALVVDNTFGAAGALC-RP-----LAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYP  227 (412)
T ss_dssp             C----HHHHHHHHHHHTCEEEEECGGGTTTTSC-CG-----GGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSG
T ss_pred             c----HHHHHHHHHHcCCEEEEECCCccccccC-Cc-----cccCCeEEEECCcccccCCCCcEEEEEEecccccccccc
Confidence            6    9999999999999999999998663322 11     123467775  8899986 78899887644         


Q ss_pred             -------------------HHHHhhcccc-cccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCC
Q 011777          337 -------------------EIANVMAQKI-QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHD  396 (477)
Q Consensus       337 -------------------~~~~~~~~~~-~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~  396 (477)
                                         ++.+.++... ....+..++..++.++..++.+  +...++..++.+++.+.|.+    ++
T Consensus       228 ~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l--~~~~~~~~~~~~~l~~~L~~----~~  301 (412)
T 2cb1_A          228 QFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETV--ALRVARMSETARFLAERLQG----HP  301 (412)
T ss_dssp             GGGCC-------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHHHT----CT
T ss_pred             ccccccccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchH--HHHHHHHHHHHHHHHHHHHc----CC
Confidence                               3333333221 1122345788777777777654  33445556677777777654    23


Q ss_pred             Cceee------------------eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC--------------
Q 011777          397 IIGDV------------------RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG--------------  444 (477)
Q Consensus       397 ~~~~v------------------~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------------  444 (477)
                      .+..+                  ++.|.++.+.+ .+          ...+.+.|.+.||.+ .+.              
T Consensus       302 ~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~~----------~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~  369 (412)
T 2cb1_A          302 KVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-GD----------LERASRFLGAIRLLK-AANLGDARTLLVHPWTT  369 (412)
T ss_dssp             TCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-SS----------HHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTT
T ss_pred             CeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-CC----------HHHHHHHHHhCCeee-ecccCCCcceeecCccc
Confidence            23222                  35677888877 31          235666777789887 431              


Q ss_pred             --------------CCCCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777          445 --------------LHGNVFRIKPPMCFTKDDADFLVDALDY  472 (477)
Q Consensus       445 --------------~~~~~iRi~p~~~~t~e~i~~~l~~l~~  472 (477)
                                    ...+.+|+++....++++|+.++++|++
T Consensus       370 ~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~  411 (412)
T 2cb1_A          370 THSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA  411 (412)
T ss_dssp             TTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred             ccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence                          0147899999999999999999988864

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.92  E-value=1.8e-23  Score=206.86  Aligned_cols=331  Identities=15%  Similarity=0.136  Sum_probs=211.3

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR  176 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar  176 (477)
                      ++|||.++...    ..+|++.+++.+....   ....+..+...+|+++|+++++.  +.+++++||++|+.++++...
T Consensus         4 ~~i~~~~~~~~----~p~~~~~~a~~~~~~~---~~~y~~~~~~~~l~~~la~~~g~--~~~~~~~~gt~a~~~~~~~~~   74 (347)
T 1jg8_A            4 MMIDLRSDTVT----KPTEEMRKAMAQAEVG---DDVYGEDPTINELERLAAETFGK--EAALFVPSGTMGNQVSIMAHT   74 (347)
T ss_dssp             -CEECSCGGGC----CCCHHHHHHHHTCCCC---CGGGTCCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHHC
T ss_pred             eEEEeccccCC----CCCHHHHHHHhcCCCC---CcccCCChHHHHHHHHHHHHhCC--ceEEEecCcHHHHHHHHHHhc
Confidence            56888877652    2678888888654211   11223466788999999999854  578999999999999987653


Q ss_pred             hccCCceEEEEccCccCCccc--ccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCe
Q 011777          177 LSTGNLGMIALRNAYHGGSSG--TIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKV  252 (477)
Q Consensus       177 ~~~~~~~ii~~~~~yhG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~  252 (477)
                        .++++|++.+++|......  .....            |...+.+ ......++      +++++++++..  +..++
T Consensus        75 --~~gd~Vl~~~~~~~~~~~~~~~~~~~------------g~~~~~v-~~~~~~~d------~~~l~~~i~~~~~~~~~~  133 (347)
T 1jg8_A           75 --QRGDEVILEADSHIFWYEVGAMAVLS------------GVMPHPV-PGKNGAMD------PDDVRKAIRPRNIHFPRT  133 (347)
T ss_dssp             --CTTCEEEEETTCHHHHSSTTHHHHHT------------CCEEEEE-CEETTEEC------HHHHHHHSCCSCTTSCCE
T ss_pred             --CCCCEEEEcCcchhhhccccchhhcc------------CeEEEEe-cCCCCccC------HHHHHHHhccccccccCc
Confidence              3567888888876542221  11111            1222221 11001111      57888877621  01268


Q ss_pred             eEEEecccCCCC-CeeeCCchhHHHHHHHHHHhCcEEEEcCcccCcc---CCCCCCccccccCCCcceeeecccccCccc
Q 011777          253 AGFIAETIQGVG-GAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG---RTGSHYWGFETQGVIPDIVTMAKGIGNGLP  328 (477)
Q Consensus       253 a~vi~epi~~~~-G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfg---r~G~~~~~~~~~gv~pDivt~sK~lg~G~p  328 (477)
                      ++|++++++|++ | ...+.+++++|.++|++||+++|+||+|. ++   ..|....... .+...-++++||++++  |
T Consensus       134 ~~v~~~~~~npt~G-~~~~~~~l~~i~~~a~~~~~~li~D~a~~-~~~~~~~~~~~~~~~-~~~d~~~~s~sK~l~~--~  208 (347)
T 1jg8_A          134 SLIAIENTHNRSGG-RVVPLENIKEICTIAKEHGINVHIDGARI-FNASIASGVPVKEYA-GYADSVMFCLSKGLCA--P  208 (347)
T ss_dssp             EEEEEESSBTTTTS-BCCCHHHHHHHHHHHHHHTCEEEEEETTH-HHHHHHHCCCHHHHH-HTCSEEEEESSSTTCC--S
T ss_pred             eEEEEeccccccCC-ccCcHHHHHHHHHHHHHCCCEEEeehhhh-hcchhhcCCChHHhc-ccccEEEEecccccCC--C
Confidence            899999888887 6 56678889999999999999999999875 21   1221111110 1221124469999975  4


Q ss_pred             eE-EEEeCHHHHHhhccc--ccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccc
Q 011777          329 LG-AVVTTPEIANVMAQK--IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG  405 (477)
Q Consensus       329 ig-~v~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g  405 (477)
                      +| ++++++++++.+...  ..++++..+.+.++++..+++... +. .++..++.+++.+.|+++  ..... ..+..|
T Consensus       209 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~~~~~l~~~L~~~--~~~~~-~~~~~~  283 (347)
T 1jg8_A          209 VGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMV-DR-LKEDHENARFLALKLKEI--GYSVN-PEDVKT  283 (347)
T ss_dssp             SCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSS-TT-HHHHHHHHHHHHHHHHHH--TCBCC-GGGCCS
T ss_pred             ceEEEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHhc--Cceec-cCCCcc
Confidence            67 566788887765432  223445556677777777776532 22 333445667777777765  22211 123456


Q ss_pred             eeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          406 LMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       406 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .++++.+...       .....++.+.|+++||.+.+++  .+++|++++..++++|+++++++|++++++
T Consensus       284 ~~~~~~~~~~-------~~~~~~~~~~l~~~gi~v~~~~--~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~  345 (347)
T 1jg8_A          284 NMVILRTDNL-------KVNAHGFIEALRNSGVLANAVS--DTEIRLVTHKDVSRNDIEEALNIFEKLFRK  345 (347)
T ss_dssp             SEEEEECTTS-------SSCHHHHHHHHHHHTEECEEEE--TTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEcccc-------cCCHHHHHHHHHHCCCEEecCC--CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence            6777766210       0124568888889999998764  578999998889999999999999998764

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.92  E-value=8.5e-24  Score=219.93  Aligned_cols=332  Identities=16%  Similarity=0.125  Sum_probs=208.8

Q ss_pred             CCHHHHHHHHHHHhhccc-ccccc-----CChHHHHHHHHHHhhC--CCCCCEEEEeCChHHHHHHHHHHHHhccCCceE
Q 011777          113 CHPDVLNAIFEQSKLLQH-ATTIY-----LHHAIADFAEALASKM--PGNLKVVYFVNSGTEANELAMLMARLSTGNLGM  184 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~-~~~~~-----~~~~~~~l~~~La~~~--~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~i  184 (477)
                      .++++++++.+++..... ....|     ..+.+..+++.+.+..  +.+.++|++|+||++|+..+++.... .+++.|
T Consensus       107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~V  185 (500)
T 3tcm_A          107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIR-NEKDGI  185 (500)
T ss_dssp             SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCC-STTEEE
T ss_pred             CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcC-CCCCEE
Confidence            467788888888876321 11222     2344555666555442  34567899999999999999987631 256789


Q ss_pred             EEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeEEEecccCC
Q 011777          185 IALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAGFIAETIQG  262 (477)
Q Consensus       185 i~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~vi~epi~~  262 (477)
                      ++..++|+++.......+             ...+.++......+..|    +++|++.++..  ...++++|++...+|
T Consensus       186 lv~~p~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~d----~~~l~~~l~~~~~~~~~~k~ivl~~p~N  248 (500)
T 3tcm_A          186 LVPIPQYPLYSASIALHG-------------GALVPYYLNESTGWGLE----TSDVKKQLEDARSRGINVRALVVINPGN  248 (500)
T ss_dssp             EEEESCCTHHHHHHHHTT-------------CEEEEEECBTTTTSBCC----HHHHHHHHHHHHHTTCEEEEEEEESSCT
T ss_pred             EEeCCCcHhHHHHHHHcC-------------CEEEEEecccccCCCCC----HHHHHHHHHHHHhcCCCceEEEEECCCC
Confidence            999999987765544332             22222221111112222    47788877631  112565555555566


Q ss_pred             CCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC-CCcccc----ccCC-C--cc-ee--eecccc-c-Cccce
Q 011777          263 VGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS-HYWGFE----TQGV-I--PD-IV--TMAKGI-G-NGLPL  329 (477)
Q Consensus       263 ~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~-~~~~~~----~~gv-~--pD-iv--t~sK~l-g-~G~pi  329 (477)
                      ++| .+++.+.+++|.++|++||+++|+||+|.++.+.+. .+..+.    .++. .  .+ ++  +|||++ | .|+|+
T Consensus       249 PtG-~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~  327 (500)
T 3tcm_A          249 PTG-QVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRG  327 (500)
T ss_dssp             TTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCC
T ss_pred             CCc-ccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccce
Confidence            777 456788899999999999999999999998765431 222221    1211 1  12 33  789999 5 59999


Q ss_pred             EEEEe---CHHHHHhhcccccccCCCCcHHHHHHHHHHHHhh-----------ch-hhHHHHHHHHHHHHHHHHHHHHHh
Q 011777          330 GAVVT---TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVI-----------DK-ERRQAHCADVGSHLLGRLRTLQER  394 (477)
Q Consensus       330 g~v~~---~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l-----------~~-~~~~~~~~~~~~~l~~~L~~l~~~  394 (477)
                      ||+++   ++++++.+.... ..+++.++++++++..+++..           +. +.+.++++++.+++.+.|++    
T Consensus       328 G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----  402 (500)
T 3tcm_A          328 GYFEITGFSAPVREQIYKIA-SVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNK----  402 (500)
T ss_dssp             EEEEEESCCTTHHHHHHHHH-HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred             EEEEEeCCCHHHHHHHHHHH-hcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence            99998   888888876543 345677888988888887521           11 23445555555555555544    


Q ss_pred             CCCceeeeccc-eeEEEEEeeCCCCCCccH-----------HHHHHHHHHHHHcCceeeccCCC-----CCEEEEeCCCC
Q 011777          395 HDIIGDVRGRG-LMVGMELVTDRKEKTPAK-----------AETAVLFEKLRELGVLVGKGGLH-----GNVFRIKPPMC  457 (477)
Q Consensus       395 ~~~~~~v~g~g-~~~~i~~~~~~~~~~~~~-----------~~~~~~~~~l~~~Gv~v~~~~~~-----~~~iRi~p~~~  457 (477)
                      .+.+......| +++++.+..      |..           .....+.+.|.++||++.|+..+     .++||+++.  
T Consensus       403 ~~g~~~~~~~g~~~~~~~~~l------p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--  474 (500)
T 3tcm_A          403 LEGITCNEAEGAMYVFPQICL------PQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--  474 (500)
T ss_dssp             STTEECCCCCBTTEECCEECC------CHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--
T ss_pred             CCCcEEecCCeEEEEeeeecC------chhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--
Confidence            33344444444 444544421      111           01112345667789999987433     247999866  


Q ss_pred             CcHHHHHHHHHHHHHHHhh
Q 011777          458 FTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       458 ~t~e~i~~~l~~l~~~l~~  476 (477)
                      .+++++++++++|.+++++
T Consensus       475 ~~~e~i~~~i~~l~~~~~~  493 (500)
T 3tcm_A          475 PQEDKIPAVISRFTVFHEA  493 (500)
T ss_dssp             SCTTTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence            8899999999999988764

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.92  E-value=1.3e-23  Score=210.59  Aligned_cols=318  Identities=11%  Similarity=0.066  Sum_probs=204.4

Q ss_pred             CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCC----CCEEEEeCChHHHHHHHHHHHHh-ccCCceEEEE
Q 011777          113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGN----LKVVYFVNSGTEANELAMLMARL-STGNLGMIAL  187 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~----~~~v~~~~sGseA~~~Al~~ar~-~~~~~~ii~~  187 (477)
                      .+|+|.+++.+++..  +... ...+...++.+++++++...    .++++|++||++|++.+++.+.. ..++++|+++
T Consensus        16 ~~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~   92 (385)
T 2bkw_A           16 LSGAVQKALDVPSLG--HTSP-EFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVV   92 (385)
T ss_dssp             CCHHHHHTTSCCCCC--TTSH-HHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEE
T ss_pred             chHHHHHHHhccccc--cCCH-HHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEE
Confidence            468888887654332  1110 01123556777888777542    47899999999999999997641 1355678787


Q ss_pred             cc-CccCCcccccccccCCCCCCCCCCCCeeeecCCC-CcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCC
Q 011777          188 RN-AYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPD-PYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGG  265 (477)
Q Consensus       188 ~~-~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G  265 (477)
                      +. .||..........            |...+.++. ......+      +++|+++++.   +++++|+++++++++|
T Consensus        93 ~~~~~~~~~~~~~~~~------------g~~~~~v~~~~~~~~~d------~~~l~~~l~~---~~~~~v~~~~~~nptG  151 (385)
T 2bkw_A           93 STGTFSDRFADCLRSY------------GAQVDVVRPLKIGESVP------LELITEKLSQ---NSYGAVTVTHVDTSTA  151 (385)
T ss_dssp             CSSHHHHHHHHHHHHT------------TCEEEEECCSSTTSCCC------HHHHHHHHHH---SCCSEEEEESEETTTT
T ss_pred             cCCcchHHHHHHHHHc------------CCceEEEecCCCCCCCC------HHHHHHHHhc---CCCCEEEEEccCCCcC
Confidence            44 5655421111111            222222221 1111122      5788888862   2578888999999999


Q ss_pred             eeeCCchhHHHHHHHHHHh--CcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccCccceEEEEeCHHHHH-
Q 011777          266 AVELAPGYLKLVYDIVRKA--GGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGLPLGAVVTTPEIAN-  340 (477)
Q Consensus       266 ~~~~~~~~l~~l~~l~~~~--gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pig~v~~~~~~~~-  340 (477)
                      .+.+    +++|.++|++|  |+++|+||+|+ +|.   ..+.+..+  .+|+++  ++|+++++.++|++++++++++ 
T Consensus       152 ~~~~----l~~i~~~~~~~~~~~~li~D~a~~-~~~---~~~~~~~~--~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~  221 (385)
T 2bkw_A          152 VLSD----LKAISQAIKQTSPETFFVVDAVCS-IGC---EEFEFDEW--GVDFALTASQKAIGAPAGLSISLCSSRFMDY  221 (385)
T ss_dssp             EECC----HHHHHHHHHHHCTTSEEEEECTTT-TTT---SCCCTTTT--TCSEEEEESSSTTCCCSCEEEEEECHHHHHH
T ss_pred             eEcC----HHHHHHHHHhhCCCCEEEEECccc-cCC---cccccccc--CceEEEecCccccccCCcceEEEEcHHHHHH
Confidence            8776    89999999999  99999999997 432   12222323  356664  5799987666799999998876 


Q ss_pred             hhcc---------------------ccccc----CCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHH-HHH
Q 011777          341 VMAQ---------------------KIQFN----TFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRL-RTL  391 (477)
Q Consensus       341 ~~~~---------------------~~~~~----t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L-~~l  391 (477)
                      .+..                     ....+    .++.|+.+++++.++++.+.+   ++..++.+++.+++.+.| +++
T Consensus       222 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  301 (385)
T 2bkw_A          222 ALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL  301 (385)
T ss_dssp             HTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5421                     00001    135678888888888887654   345667777777777777 543


Q ss_pred             HHhCCCceeee---ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC---CCCEEEEe-CC---CCCcHH
Q 011777          392 QERHDIIGDVR---GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL---HGNVFRIK-PP---MCFTKD  461 (477)
Q Consensus       392 ~~~~~~~~~v~---g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~iRi~-p~---~~~t~e  461 (477)
                        .........   ..+.++++.+.        .   ..++.+.|.++||.+.++..   ..+++||+ .+   +.++++
T Consensus       302 --g~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e  368 (385)
T 2bkw_A          302 --QLTSVSRYPSNMSAHGLTAVYVA--------D---PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLP  368 (385)
T ss_dssp             --CCEESSCSSSTTBCSSCEEEECS--------C---HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCT
T ss_pred             --CceecccCcccccCCceEEEecC--------C---HHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHH
Confidence              111111000   24677777652        1   45688888899999988642   24789998 44   257999


Q ss_pred             HHHHHHHHHHHHHhhC
Q 011777          462 DADFLVDALDYSMSKL  477 (477)
Q Consensus       462 ~i~~~l~~l~~~l~~l  477 (477)
                      |+++++++|+++++++
T Consensus       369 ~i~~~~~~l~~~~~~~  384 (385)
T 2bkw_A          369 YMKNCFDLIKLALQRK  384 (385)
T ss_dssp             HHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999988653

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.92  E-value=6.7e-24  Score=222.49  Aligned_cols=351  Identities=12%  Similarity=0.046  Sum_probs=206.6

Q ss_pred             EEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHH-hhCCC-----CCCEEEEeCChHHHHHHH
Q 011777           98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALA-SKMPG-----NLKVVYFVNSGTEANELA  171 (477)
Q Consensus        98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La-~~~~~-----~~~~v~~~~sGseA~~~A  171 (477)
                      ++||..|.    .++.+|.+++++.+++....|....+..+.++++++.+. +....     +.++|++|+|++||+..+
T Consensus       106 ~i~l~~g~----~~~~~~~~~~al~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~  181 (546)
T 2zy4_A          106 SLSYVRDQ----LGLDPAAFLHEMVDGILGCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYI  181 (546)
T ss_dssp             HHHHHHHT----SCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHH
T ss_pred             hhecccCC----CCCCChHHHHHHHHhhhcCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHH
Confidence            45554443    467788899988887753333332234456666666553 33211     347899999999999999


Q ss_pred             HHHH--Hhc-cCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          172 MLMA--RLS-TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       172 l~~a--r~~-~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      ++..  +.. .+++.|++.+++|+++...+.....           +...+.++......|..|    +++|++++.   
T Consensus       182 ~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~-----------g~~~~~v~~~~~~~~~~d----~~~l~~~~~---  243 (546)
T 2zy4_A          182 FESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQY-----------ALEEVAINADPSLNWQYP----DSELDKLKD---  243 (546)
T ss_dssp             HHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTS-----------CCEEEEEECBGGGTTBCC----HHHHGGGGS---
T ss_pred             HHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCC-----------CcEEEEEecCcccCCCCC----HHHHHHhhC---
Confidence            9863  222 3567899999999998665322110           222222222111112112    466666553   


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHH--HHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeeccccc-C
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIV--RKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIG-N  325 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~--~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg-~  325 (477)
                       .++++|+++..+|++| .+.+.+.+++|.++|  ++||++||+||+|.+|......+... ..+....+.+|||.+| .
T Consensus       244 -~~~k~v~l~~p~NPtG-~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~-~~~~~i~~~S~SK~~g~~  320 (546)
T 2zy4_A          244 -PAIKIFFCVNPSNPPS-VKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAI-CPENTLLVYSFSKYFGAT  320 (546)
T ss_dssp             -TTEEEEEEESSCSSSC-BCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHH-CGGGEEEEEESTTTTTCG
T ss_pred             -CCCeEEEEECCCCCCC-ccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHh-CCCCEEEEEeCccccCCC
Confidence             4566666666677777 556888899999999  78999999999999887533111111 1123334558999998 6


Q ss_pred             ccceEEEEeCHH-HHHhhccc------------------------------------ccccCCCCcHHHHHHHH--HHHH
Q 011777          326 GLPLGAVVTTPE-IANVMAQK------------------------------------IQFNTFGGNPVCSAGGL--AVLR  366 (477)
Q Consensus       326 G~pig~v~~~~~-~~~~~~~~------------------------------------~~~~t~~~~~~~~aaa~--a~l~  366 (477)
                      |+|+||++++++ +++.+...                                    ....+.+.+.+.+.++.  +...
T Consensus       321 GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~a  400 (546)
T 2zy4_A          321 GWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFA  400 (546)
T ss_dssp             GGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHH
T ss_pred             CcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHH
Confidence            999999999875 76665210                                    01223355666665532  1112


Q ss_pred             hhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccH----------HHHHHHHHHHHH
Q 011777          367 VIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAK----------AETAVLFEKLRE  435 (477)
Q Consensus       367 ~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~----------~~~~~~~~~l~~  435 (477)
                      .+++ +.+.+++++..+..++.+.+... .+........|+++|+++..-. ...+..          .....+.+.+.+
T Consensus       401 ll~~~~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~wl~~~~~~~~~l~~ll~~  478 (546)
T 2zy4_A          401 LMDEADEYKHTLKQLIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVT-AKLYGEAFSEWAVKQSSTGDMLFRIADE  478 (546)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHH-HHHHCHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhh-cccccHHHHHHhhccCCHHHHHHHHHHH
Confidence            2322 33444444433333333322221 2221122234566687762100 000000          012346778889


Q ss_pred             cCceeeccCCC---CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          436 LGVLVGKGGLH---GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       436 ~Gv~v~~~~~~---~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +||.+.||..+   .+++||++. ..+++++++++++|++++.+
T Consensus       479 ~gV~v~pG~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~  521 (546)
T 2zy4_A          479 TGIVLLPGRGFGSNRPSGRASLA-NLNEYEYAAIGRALRKMADE  521 (546)
T ss_dssp             HSCCCEESSCTTCSSCEEEEESS-SSCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEeCccccCCCCCeEEEEec-cCCHHHHHHHHHHHHHHHHH
Confidence            99999998544   368999875 45899999999999988753

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.92  E-value=3.3e-24  Score=214.39  Aligned_cols=315  Identities=14%  Similarity=0.109  Sum_probs=199.8

Q ss_pred             ccCCCCCHH---HHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceE
Q 011777          108 VSCGHCHPD---VLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGM  184 (477)
Q Consensus       108 ~~lGh~~p~---v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~i  184 (477)
                      .++|+++|.   +.+++.+.+...    ..+..+...++++.|+++++.  +.+++++||++|++.+++.++ ..++++|
T Consensus         9 ~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~~~~~~-~~~gd~v   81 (374)
T 3uwc_A            9 SYLERQFADIEPYLNDLREFIKTA----DFTLGAELEKFEKRFAALHNA--PHAIGVGTGTDALAMSFKMLN-IGAGDEV   81 (374)
T ss_dssp             CCHHHHTSSCHHHHHHHHHHHHHT----CCSSCHHHHHHHHHHHHHTTC--SEEEEESCHHHHHHHHHHHTT-CCTTCEE
T ss_pred             eccccCCCCchHHHHHHHHHHHcC----CcccChhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcC-CCCCCEE
Confidence            344444433   555555555442    234567789999999999965  489999999999999998763 2356789


Q ss_pred             EEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCC
Q 011777          185 IALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVG  264 (477)
Q Consensus       185 i~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~  264 (477)
                      ++..++||+........             |...+.++...  .+..|    ++++++.++    +++++|+  |. +++
T Consensus        82 ~~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~--~~~~d----~~~l~~~~~----~~~~~v~--~~-n~~  135 (374)
T 3uwc_A           82 ITCANTFIASVGAIVQA-------------GATPVLVDSEN--GYVID----PEKIEAAIT----DKTKAIM--PV-HYT  135 (374)
T ss_dssp             EEESSSCHHHHHHHHHT-------------TCEEEEECBCT--TSSBC----GGGTGGGCC----TTEEEEC--CB-CGG
T ss_pred             EECCCccHHHHHHHHHc-------------CCEEEEEecCC--CCCcC----HHHHHHhCC----CCceEEE--Ee-CCc
Confidence            99999999876544322             22222222111  11111    356666654    3677776  44 456


Q ss_pred             CeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec----ccccC-ccceEEEEeC-HHH
Q 011777          265 GAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA----KGIGN-GLPLGAVVTT-PEI  338 (477)
Q Consensus       265 G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s----K~lg~-G~pig~v~~~-~~~  338 (477)
                      |.+.+    +++|.++|++||+++|+||+|+.+.     .+.....+..+|++++|    |.+++ |. .|+++++ +++
T Consensus       136 G~~~~----~~~i~~~~~~~~~~li~D~~~~~g~-----~~~~~~~~~~~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~  205 (374)
T 3uwc_A          136 GNIAD----MPALAKIAKKHNLHIVEDACQTILG-----RINDKFVGSWGQFACFSLHPLKNLNVWSD-AGVIITHSDEY  205 (374)
T ss_dssp             GCCCC----HHHHHHHHHHTTCEEEEECTTCTTC-----EETTEETTSSSSEEEEECSSSSSSCCSSC-CEEEEESCHHH
T ss_pred             CCcCC----HHHHHHHHHHcCCEEEEeCCCccCc-----eeCCeeccccccEEEEeCCCCCcCCccce-eEEEEeCCHHH
Confidence            66555    9999999999999999999998332     22234445557988877    99987 65 7888875 456


Q ss_pred             HHhhcccc------------cccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeee-ccc
Q 011777          339 ANVMAQKI------------QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR-GRG  405 (477)
Q Consensus       339 ~~~~~~~~------------~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~-g~g  405 (477)
                      .+.+....            .+.++..+++.+++++..++.+  +++.++.+++.+++++.|.++........... ...
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  283 (374)
T 3uwc_A          206 AEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQL--ETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYH  283 (374)
T ss_dssp             HHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEEC
T ss_pred             HHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCce
Confidence            55544321            1223344666666665554433  44667777777777777766421011111111 111


Q ss_pred             eeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-------------------------CCCEEEEeCCCCCcH
Q 011777          406 LMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-------------------------HGNVFRIKPPMCFTK  460 (477)
Q Consensus       406 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------------~~~~iRi~p~~~~t~  460 (477)
                      .++.+.+...         ....+.+.|.++||.+.++..                         ..+.+|++++..+|+
T Consensus       284 ~~~~~~~~~~---------~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~  354 (374)
T 3uwc_A          284 VFHIYVLRVK---------YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTE  354 (374)
T ss_dssp             CCSSEEEEET---------THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCH
T ss_pred             eeEEEEEEcC---------CHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCH
Confidence            2222222111         245788999999999887630                         016899999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 011777          461 DDADFLVDALDYSMSK  476 (477)
Q Consensus       461 e~i~~~l~~l~~~l~~  476 (477)
                      +||++++++|++++++
T Consensus       355 edi~~~~~~l~~~l~~  370 (374)
T 3uwc_A          355 EEINYIIKKVREFYLE  370 (374)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999999864

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.92  E-value=2.2e-23  Score=210.54  Aligned_cols=337  Identities=12%  Similarity=0.021  Sum_probs=198.7

Q ss_pred             EEeecCCcccccCCCC--CHHHHHHHHHHHhhccccccccC-----ChHHHHHHHHHHhhCC--CCCCEEEE--eCChHH
Q 011777           98 YLDAFAGIVTVSCGHC--HPDVLNAIFEQSKLLQHATTIYL-----HHAIADFAEALASKMP--GNLKVVYF--VNSGTE  166 (477)
Q Consensus        98 ylD~~~g~~~~~lGh~--~p~v~~Av~~~l~~~~~~~~~~~-----~~~~~~l~~~La~~~~--~~~~~v~~--~~sGse  166 (477)
                      .|||..|.+....++.  .+++.+++.+.+...  ....|.     .+.++.+++.+....+  .+.++|++  |+||++
T Consensus        30 ~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~  107 (401)
T 7aat_A           30 KMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKK--MDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTG  107 (401)
T ss_dssp             CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTT--CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred             ceeeeeeeEECCCCCEechHHHHHHHHHhcccc--cccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchH
Confidence            5777777653333332  357788777765521  111222     2334444444443322  11567877  999999


Q ss_pred             HHHHHHHHHHhc-cCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHh
Q 011777          167 ANELAMLMARLS-TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHID  245 (477)
Q Consensus       167 A~~~Al~~ar~~-~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~  245 (477)
                      |+..+++..+.. .+++.|++.+++|+++.......             |...+.+|......+.-|    ++++++.++
T Consensus       108 al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~~l~  170 (401)
T 7aat_A          108 SLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDA-------------GLQLQAYRYYDPKTCSLD----FTGAMEDIS  170 (401)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHT-------------TCEEEEEECEETTTTEEC----HHHHHHHHT
T ss_pred             HHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHc-------------CCeeEeeeeeccccCccC----HHHHHHHHH
Confidence            999999876543 34678999999998875444332             122222221100011112    466666665


Q ss_pred             ccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC--CCccccc-cCCCcc---eeee
Q 011777          246 FGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS--HYWGFET-QGVIPD---IVTM  319 (477)
Q Consensus       246 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~--~~~~~~~-~gv~pD---ivt~  319 (477)
                      .. ..+++++++...+|++|. .++.+.+++|.++|++||+++|+||+|.+|++.+.  ..+.+.. .+..++   +.+|
T Consensus       171 ~~-~~~~~~v~i~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~  248 (401)
T 7aat_A          171 KI-PEKSIILLHACAHNPTGV-DPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSY  248 (401)
T ss_dssp             TS-CTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEEC
T ss_pred             hC-CCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecC
Confidence            42 346677777777788884 56888999999999999999999999999877541  0222221 122233   3579


Q ss_pred             ccccc-CccceEEEEe---CHH----HHHhhcccccccCCCCcHHHHHHHHHHHHhh------c--hhhHHHHHHHHHHH
Q 011777          320 AKGIG-NGLPLGAVVT---TPE----IANVMAQKIQFNTFGGNPVCSAGGLAVLRVI------D--KERRQAHCADVGSH  383 (477)
Q Consensus       320 sK~lg-~G~pig~v~~---~~~----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l------~--~~~~~~~~~~~~~~  383 (477)
                      ||.++ .|+|+||+++   +++    +.+.+......++.+.+.+++.++...++.-      .  -++..++++++.++
T Consensus       249 sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~  328 (401)
T 7aat_A          249 AKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQ  328 (401)
T ss_dssp             TTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999 6999999886   566    3344433333344555666666666555421      0  12344555566666


Q ss_pred             HHHHHHHHHHhCCCceee-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHH
Q 011777          384 LLGRLRTLQERHDIIGDV-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDD  462 (477)
Q Consensus       384 l~~~L~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~  462 (477)
                      +.+.|+++... +.+... +..|++.++.+        +    ...+...+.++||.+.++      +||+.+. +++++
T Consensus       329 l~~~L~~~~~~-~~~~~~~~~~~~~~~~~~--------~----~~~~~~ll~~~gi~v~~~------~Ris~~~-~~~~~  388 (401)
T 7aat_A          329 LVSNLKKEGSS-HNWQHITDQIGMFCFTGL--------K----PEQVERLTKEFSIYMTKD------GRISVAG-VASSN  388 (401)
T ss_dssp             HHHHHHHTTCC-SCCHHHHHCCSSEEECCC--------C----HHHHHHHHHHHCEECCTT------CEEEGGG-CCTTT
T ss_pred             HHHHHHhcCCC-CCCceecCCcceEEecCC--------C----HHHHHHHHHhCCEeccCC------CeEEecc-CChhh
Confidence            66666553100 112222 23344555433        1    233444556789999764      5888764 45566


Q ss_pred             HHHHHHHHHHHHh
Q 011777          463 ADFLVDALDYSMS  475 (477)
Q Consensus       463 i~~~l~~l~~~l~  475 (477)
                      |++++++|+++++
T Consensus       389 i~~~~~~l~~~~~  401 (401)
T 7aat_A          389 VGYLAHAIHQVTK  401 (401)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999998763

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.92  E-value=3.4e-24  Score=217.22  Aligned_cols=334  Identities=14%  Similarity=0.126  Sum_probs=205.3

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccC-ChHHHHHHHHHHhhC-CCC-----CCEEE--EeCChHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL-HHAIADFAEALASKM-PGN-----LKVVY--FVNSGTE  166 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~-~~~~~~l~~~La~~~-~~~-----~~~v~--~~~sGse  166 (477)
                      ..+|||..|.+..  ..++|.+.+++.++....   ...|. .....+|++.+++++ ...     .++|.  .+++|++
T Consensus        41 ~~~i~l~~g~~~d--~~~~~~v~~a~~~a~~~~---~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~g  115 (409)
T 4eu1_A           41 KRKVNLSIGVYRD--DADQPFVLECVKQATLGT---NMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTG  115 (409)
T ss_dssp             SSCEECCCSSCCC--TTSCCCCCHHHHTCCCCS---CCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHH
T ss_pred             cCceeeeeeEEEC--CCCCEeecHHHHhcCccc---cccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchH
Confidence            3578888776411  135677888887762221   11222 223356666666654 222     35664  4999999


Q ss_pred             HHHHHHHHHHhccC-CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHh
Q 011777          167 ANELAMLMARLSTG-NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHID  245 (477)
Q Consensus       167 A~~~Al~~ar~~~~-~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~  245 (477)
                      |++++..+++...+ ++.|++.+++|+++.......             |...+.+|......+..|    ++++++.++
T Consensus       116 a~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~~l~  178 (409)
T 4eu1_A          116 ALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKA-------------GMELTPYSYYDPATKGLN----LAGMLECLD  178 (409)
T ss_dssp             HHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHT-------------TCEEEEECCEETTTTEEC----HHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHc-------------CCeEEEEEeecCcCCcCc----HHHHHHHHH
Confidence            99998887766654 488999999998775544333             222222221100111112    578888886


Q ss_pred             ccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC--CCcccc-ccCCCccee---ee
Q 011777          246 FGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS--HYWGFE-TQGVIPDIV---TM  319 (477)
Q Consensus       246 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~--~~~~~~-~~gv~pDiv---t~  319 (477)
                      .. ++..+++++...+|++| ..++.+.+++|.++|++||+++|+||+|.+|++.+.  ..++.. ..+..++++   +|
T Consensus       179 ~~-~~~~~~i~~~~p~NPtG-~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~  256 (409)
T 4eu1_A          179 KA-PEGSVILVHACAHNPTG-VDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSF  256 (409)
T ss_dssp             HS-CTTCEEEEESSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEEC
T ss_pred             hC-CCCcEEEEECCCCCCCC-CCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecC
Confidence            32 23455555444456666 456888899999999999999999999999977541  012222 224445544   79


Q ss_pred             ccccc-CccceEEE---EeCHH----HHHhhcccccccCCCCcHHHHHHHHHHHHhhc--------hhhHHHHHHHHHHH
Q 011777          320 AKGIG-NGLPLGAV---VTTPE----IANVMAQKIQFNTFGGNPVCSAGGLAVLRVID--------KERRQAHCADVGSH  383 (477)
Q Consensus       320 sK~lg-~G~pig~v---~~~~~----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~--------~~~~~~~~~~~~~~  383 (477)
                      ||.+| .|+|+||+   +++++    +++.+......++++.+++++.++.++|+...        .++..++++++.++
T Consensus       257 SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (409)
T 4eu1_A          257 SKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKR  336 (409)
T ss_dssp             TTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999 69999996   55677    55555544445566778899999888887421        12345556666666


Q ss_pred             HHHHHHHHHHhCCC-ceeeec-cceeEEEEEeeCCCCCCccHHHHHHHHHHH-HHcCceeeccCCCCCEEEEeCCCCCcH
Q 011777          384 LLGRLRTLQERHDI-IGDVRG-RGLMVGMELVTDRKEKTPAKAETAVLFEKL-RELGVLVGKGGLHGNVFRIKPPMCFTK  460 (477)
Q Consensus       384 l~~~L~~l~~~~~~-~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~~~iRi~p~~~~t~  460 (477)
                      +.+.|+++.  .+. +....+ .|.++++.+        +    . ++...+ .++||.+.+++      ||+.+ .+++
T Consensus       337 l~~~L~~~g--~~~~~~~~~~~~~~~~~~~~--------~----~-~~~~~ll~~~gv~v~p~~------Ri~~~-~~~~  394 (409)
T 4eu1_A          337 LVSELKACG--SVHDWSHIERQVGMMAYTGL--------T----R-EQVELLRSEYHIYMTLNG------RAAVS-GLNS  394 (409)
T ss_dssp             HHHHHHHTT--CCSCCHHHHHSCSSEEECCC--------C----H-HHHHHHHHHHCEECCTTC------EEEGG-GCCT
T ss_pred             HHHHHHhcC--CCCCcceecCCceEEEEeCC--------C----H-HHHHHHHHcCCEEEcCCC------EEEEE-ecCH
Confidence            666665531  111 111223 344445322        1    1 234444 46799998752      77764 4677


Q ss_pred             HHHHHHHHHHHHHHh
Q 011777          461 DDADFLVDALDYSMS  475 (477)
Q Consensus       461 e~i~~~l~~l~~~l~  475 (477)
                      ++|++++++|+++++
T Consensus       395 ~~i~~~~~~l~~~l~  409 (409)
T 4eu1_A          395 TNVEYVSQAIHNVTK  409 (409)
T ss_dssp             TTHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHhC
Confidence            889999999998763

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.91  E-value=1.2e-22  Score=205.31  Aligned_cols=295  Identities=14%  Similarity=0.020  Sum_probs=196.5

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +....+.++...+++++++++++.  +.+++++||++|++.+++.+.  .++++|++.++.||+...........     
T Consensus        57 ~~~~r~~~~~~~~l~~~la~~~g~--~~~i~~~sG~~a~~~~l~~~~--~~gd~vl~~~~~~~~~~~~~~~~~~~-----  127 (398)
T 1gc0_A           57 HFYSRISNPTLNLLEARMASLEGG--EAGLALASGMGAITSTLWTLL--RPGDEVLLGNTLYGCTFAFLHHGIGE-----  127 (398)
T ss_dssp             ------CCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC--CTTCEEEEESSCCSHHHHHHHHTGGG-----
T ss_pred             CcccCCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--cCCCEEEEeCCCchhHHHHHHHHHHH-----
Confidence            334456788899999999999865  477888999999999999763  35678999999999865443211110     


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                          .|+....++.      . |    ++++++.++    +++++|+++++++++|.+.+    +++|.++|++||+++|
T Consensus       128 ----~g~~~~~~~~------~-d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li  184 (398)
T 1gc0_A          128 ----FGVKLRHVDM------A-D----LQALEAAMT----PATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVV  184 (398)
T ss_dssp             ----GTCEEEEECT------T-C----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEE
T ss_pred             ----cCCEEEEECC------C-C----HHHHHHhcC----CCCeEEEEECCCCCCccccc----HHHHHHHHHHcCCEEE
Confidence                1222222211      0 1    477888775    47899999999999998776    9999999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCcceeeecccccC-ccce-EEEEeCHHHHH-hhcccccc-cCCCCcHHHHHHHHHHH
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGN-GLPL-GAVVTTPEIAN-VMAQKIQF-NTFGGNPVCSAGGLAVL  365 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~-G~pi-g~v~~~~~~~~-~~~~~~~~-~t~~~~~~~~aaa~a~l  365 (477)
                      +||+|+.+. .+ ...   .++....+.+++|.+++ |.|+ |++++++++++ .+....+. .+.+.|++.++++++++
T Consensus       185 ~D~~~~~~~-~~-~~~---~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  259 (398)
T 1gc0_A          185 VDNTYCTPY-LQ-RPL---ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGI  259 (398)
T ss_dssp             EECTTTHHH-HC-CGG---GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHH
T ss_pred             EECCCcccc-cC-Cch---hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhcc
Confidence            999998442 22 121   23555555578999996 6888 99999988665 45443333 34567899988888888


Q ss_pred             HhhchhhHHHHHHHHHHHHHHHHHHHHH----hCCCc---------e-eeeccceeEEEEEeeCCCCCCccHHHHHHHHH
Q 011777          366 RVIDKERRQAHCADVGSHLLGRLRTLQE----RHDII---------G-DVRGRGLMVGMELVTDRKEKTPAKAETAVLFE  431 (477)
Q Consensus       366 ~~l~~~~~~~~~~~~~~~l~~~L~~l~~----~~~~~---------~-~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~  431 (477)
                      +.+  +...++..++.+.+.+.|++...    .++.+         . ..++.|.++.+++..        .  .....+
T Consensus       260 ~~~--~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--------~--~~~~~~  327 (398)
T 1gc0_A          260 KTL--NLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG--------G--IGAGRR  327 (398)
T ss_dssp             TTH--HHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT--------H--HHHHHH
T ss_pred             chH--HHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC--------C--HHHHHH
Confidence            754  23445555666666666654210    00100         0 013568888887731        1  234555


Q ss_pred             HHHHcCceeec---cC-------------------------CCCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          432 KLRELGVLVGK---GG-------------------------LHGNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       432 ~l~~~Gv~v~~---~~-------------------------~~~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      .+.+.|+.+..   |+                         ...+.+||+++...++++|+.+.++|+++
T Consensus       328 ~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~  397 (398)
T 1gc0_A          328 FMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS  397 (398)
T ss_dssp             HHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence            66677776643   21                         11479999999999999999999998865

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.91  E-value=5.5e-23  Score=206.94  Aligned_cols=312  Identities=15%  Similarity=0.106  Sum_probs=206.6

Q ss_pred             CHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccC
Q 011777          114 HPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG  193 (477)
Q Consensus       114 ~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG  193 (477)
                      ++++++++.+++++..+    +..+...++++.++++++.  +.+++++||++|++.+++.++ ..+++.|++..++|++
T Consensus        19 ~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~al~~~~~~~~-~~~gd~Vl~~~~~~~~   91 (393)
T 1mdo_A           19 GAEELAAVKTVLDSGWI----TTGPKNQELEAAFCRLTGN--QYAVAVSSATAGMHIALMALG-IGEGDEVITPSMTWVS   91 (393)
T ss_dssp             CHHHHHHHHHHHHHTCC----SSSHHHHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCHH
T ss_pred             CHHHHHHHHHHHhcCCc----CCChHHHHHHHHHHHHhCC--CcEEEecChHHHHHHHHHHcC-CCCCCEEEeCCCccHh
Confidence            58899999998876422    2456788999999999864  589999999999999998763 2356789999999998


Q ss_pred             CcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchh
Q 011777          194 GSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGY  273 (477)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~  273 (477)
                      ........             |...+.++.... .+..|    .+++++.++    +++++|++++.   .|.+.+    
T Consensus        92 ~~~~~~~~-------------g~~~~~v~~~~~-~~~~d----~~~l~~~l~----~~~~~v~~~~~---~G~~~~----  142 (393)
T 1mdo_A           92 TLNMIVLL-------------GANPVMVDVDRD-TLMVT----PEHIEAAIT----PQTKAIIPVHY---AGAPAD----  142 (393)
T ss_dssp             HHHHHHHT-------------TCEEEEECBCTT-TCCBC----HHHHHHHCC----TTEEEECCBCG---GGCCCC----
T ss_pred             HHHHHHHC-------------CCEEEEEeccCC-cCCCC----HHHHHHhcC----CCceEEEEeCC---CCCcCC----
Confidence            75433221             222222221110 11112    477888775    36788887763   454444    


Q ss_pred             HHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCcceeeec----ccccCccceEEEEeC-HHHHHhhccccc
Q 011777          274 LKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIVTMA----KGIGNGLPLGAVVTT-PEIANVMAQKIQ  347 (477)
Q Consensus       274 l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pig~v~~~-~~~~~~~~~~~~  347 (477)
                      +++|.++|++||+++|+||+|+ |+.+.+ ..     .+. +|++++|    |.+++| ++|+++++ +++++.+.....
T Consensus       143 ~~~i~~l~~~~~~~li~D~a~~~g~~~~~-~~-----~~~-~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~  214 (393)
T 1mdo_A          143 LDAIYALGERYGIPVIEDAAHATGTSYKG-RH-----IGA-RGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKF  214 (393)
T ss_dssp             HHHHHHHHHHHTCCBCEECTTCTTCEETT-EE-----TTS-SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTB
T ss_pred             HHHHHHHHHHcCCeEEEECccccCCeECC-ee-----cCC-CCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHh
Confidence            8999999999999999999998 333334 22     232 7888665    998765 78999996 788776643211


Q ss_pred             cc--------------------C----CCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCce--ee
Q 011777          348 FN--------------------T----FGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIG--DV  401 (477)
Q Consensus       348 ~~--------------------t----~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~--~v  401 (477)
                      .+                    +    +..+++.++++++.++.+  ++..++.+++.+++++.|.++.-+.....  ..
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~  292 (393)
T 1mdo_A          215 HGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMADLPFQPLSLPSWEH  292 (393)
T ss_dssp             TTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCE
T ss_pred             cCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCcccccCCCCCC
Confidence            10                    1    234778777777776643  34566666677777777665310000000  12


Q ss_pred             eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC-----------------------CCEEEEeCCCCC
Q 011777          402 RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH-----------------------GNVFRIKPPMCF  458 (477)
Q Consensus       402 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-----------------------~~~iRi~p~~~~  458 (477)
                      ++.+.++++.+..+.     ......++.+.|.++||.+.++...                       .+.+|+++...+
T Consensus       293 ~~~~~~~~v~~~~~~-----~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~  367 (393)
T 1mdo_A          293 IHAWHLFIIRVDEAR-----CGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDM  367 (393)
T ss_dssp             ECCCSCEEEECCHHH-----HSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTC
T ss_pred             CceeEEEEEEecccc-----cccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCC
Confidence            344557777763100     0012457888999999998875311                       237999888889


Q ss_pred             cHHHHHHHHHHHHHHHhh
Q 011777          459 TKDDADFLVDALDYSMSK  476 (477)
Q Consensus       459 t~e~i~~~l~~l~~~l~~  476 (477)
                      |++|+++++++|+++++.
T Consensus       368 t~~~i~~~~~~l~~~~~~  385 (393)
T 1mdo_A          368 TESDFDRVITALHQIAGQ  385 (393)
T ss_dssp             CHHHHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHHHHhc
Confidence            999999999999998753

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.91  E-value=4.7e-23  Score=211.43  Aligned_cols=324  Identities=16%  Similarity=0.120  Sum_probs=197.5

Q ss_pred             CCCHHHHHHHHHHHhh-cccc--ccccC--Ch---HHHHHH-HHHHhhCCCCCCEEEE-eCChHHHHHHHHHHHHhccCC
Q 011777          112 HCHPDVLNAIFEQSKL-LQHA--TTIYL--HH---AIADFA-EALASKMPGNLKVVYF-VNSGTEANELAMLMARLSTGN  181 (477)
Q Consensus       112 h~~p~v~~Av~~~l~~-~~~~--~~~~~--~~---~~~~l~-~~La~~~~~~~~~v~~-~~sGseA~~~Al~~ar~~~~~  181 (477)
                      +.+|+|++|+.+++.+ ..+.  ...+.  .+   ..++++ ++++++++.  +.+.+ ++||++|++.+++.++.  ++
T Consensus        56 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~--~~~~v~~~sGs~a~~~a~~~~~~--~G  131 (447)
T 3h7f_A           56 FVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGA--EFANVQPHSGAQANAAVLHALMS--PG  131 (447)
T ss_dssp             CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCCSSHHHHHHHHHHHHCC--TT
T ss_pred             CCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCC--CceEEEeCCHHHHHHHHHHHhcC--CC
Confidence            3589999999988753 2111  11111  12   235666 889988865  44555 99999999999997754  56


Q ss_pred             ceEEEEccCccCCc-ccc-cccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEe-c
Q 011777          182 LGMIALRNAYHGGS-SGT-IGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIA-E  258 (477)
Q Consensus       182 ~~ii~~~~~yhG~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~-e  258 (477)
                      +.|++.+++|+++. .+. ....+.          .+..++.+.... .+..|    +++++++++.   .++++|++ .
T Consensus       132 d~Vl~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~~-~~~~d----~~~l~~~i~~---~~~~~i~~~~  193 (447)
T 3h7f_A          132 ERLLGLDLANGGHLTHGMRLNFSGK----------LYENGFYGVDPA-THLID----MDAVRATALE---FRPKVIIAGW  193 (447)
T ss_dssp             CEEEEECGGGTCCGGGTCTTSHHHH----------SSEEEEECCCTT-TCSCC----HHHHHHHHHH---HCCSEEEEEC
T ss_pred             CEEEecCcccccccchhhhhhhcCC----------eeEEEEcCcCcc-cCCcC----HHHHHHHHHh---cCCeEEEEcC
Confidence            78999999987732 221 111111          111222221100 01112    5788888852   23456666 5


Q ss_pred             ccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcc-cCccCCCCCCccccccCCCccee--eecccccCccceEEEEeC
Q 011777          259 TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQ-TGFGRTGSHYWGFETQGVIPDIV--TMAKGIGNGLPLGAVVTT  335 (477)
Q Consensus       259 pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G~pig~v~~~  335 (477)
                      |++++++       ++++|+++|++||++||+||+| .|+.+.| ..... ..+  .|++  ++||+++ |++.|+++++
T Consensus       194 ~~~~~~~-------~l~~i~~l~~~~g~lli~Dea~~~g~~~~g-~~~~~-~~~--~di~~~s~sK~l~-G~~gG~i~~~  261 (447)
T 3h7f_A          194 SAYPRVL-------DFAAFRSIADEVGAKLLVDMAHFAGLVAAG-LHPSP-VPH--ADVVSTTVHKTLG-GGRSGLIVGK  261 (447)
T ss_dssp             SSCCSCC-------CHHHHHHHHHHHTCEEEEECTTTHHHHHTT-SSCCS-TTT--CSEEEEESSGGGC-CCSCEEEEEC
T ss_pred             CCCCCcc-------CHHHHHHHHHHcCCEEEEECCchhhhhcCC-CCCCC-CCC--CcEEEecCCcCCC-CCCeEEEEEC
Confidence            6665432       4899999999999999999996 5554445 22211 112  3555  6789995 6788999999


Q ss_pred             HHHHHhhcccccccCCCCc-HHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCceeee--ccceeEE
Q 011777          336 PEIANVMAQKIQFNTFGGN-PVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIGDVR--GRGLMVG  409 (477)
Q Consensus       336 ~~~~~~~~~~~~~~t~~~~-~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~--g~g~~~~  409 (477)
                      +++++.+......++++++ ...++++.+++..+.+   +++.+++.++.+++.+.|.+...+.+.+..+.  ..+.+++
T Consensus       262 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~  341 (447)
T 3h7f_A          262 QQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVL  341 (447)
T ss_dssp             GGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEE
T ss_pred             HHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEE
Confidence            9988877654444444443 3335555555655433   34677788888888888766421111122221  2355666


Q ss_pred             EEEeeCCCCCCccHHHHHHHHHHHHHcCceee----cc----CCCCCEEEEeCCCC----CcHHHHHHHHHHHHHHHhh
Q 011777          410 MELVTDRKEKTPAKAETAVLFEKLRELGVLVG----KG----GLHGNVFRIKPPMC----FTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       410 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~----~~~~~~iRi~p~~~----~t~e~i~~~l~~l~~~l~~  476 (477)
                      +++....       .....+.+.|.++||++.    ++    ....+.+||.++..    ++++|+++++++|++++++
T Consensus       342 ~~~~~~~-------~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~  413 (447)
T 3h7f_A          342 VDLRDSP-------LDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALAT  413 (447)
T ss_dssp             EECTTSS-------CCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred             EEcCCCC-------CCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence            6653211       013456667777899988    33    12346799988765    6799999999999998853

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.91  E-value=1.3e-23  Score=208.71  Aligned_cols=336  Identities=13%  Similarity=0.035  Sum_probs=201.7

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccC-ChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYL-HHAIADFAEALASKMPGNLKVVYFVNSGTEANELAM  172 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~-~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al  172 (477)
                      |+|+|.++......+| .||.+.+++.++++...  .....|. .+...+|+++|+++++.  +..++++||++|++.++
T Consensus         3 ~~~~~~~~~~~~l~~~-~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~--~~~i~~~~G~~a~~~al   79 (357)
T 3lws_A            3 NRLRTSFQQTTGQISG-HGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGM--DDAVFFPSGTMAQQVAL   79 (357)
T ss_dssp             CHHHHHHHTCSEESSB-SSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHH
T ss_pred             chhhhHHHhhcccccC-CCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhCC--CcEEEecCcHHHHHHHH
Confidence            4556633333323344 47888888888777521  1112233 46788999999999865  55677799999999999


Q ss_pred             HHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCe
Q 011777          173 LMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKV  252 (477)
Q Consensus       173 ~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~  252 (477)
                      +.+... +.+.+|+..+.+|............         .+...++++... ..++      .++++++     . ++
T Consensus        80 ~~~~~~-gd~~~vi~~~~~~~~~~~~~~~~~~---------~g~~~~~v~~~~-~~~d------~~~l~~~-----~-~~  136 (357)
T 3lws_A           80 RIWSDE-TDNRTVAYHPLCHLEIHEQDGLKEL---------HPIETILVGAAD-RLMT------LDEIKAL-----P-DI  136 (357)
T ss_dssp             HHHHHH-HTCCEEEECTTCHHHHSSTTHHHHH---------SSCEEEECSCTT-SCCC------HHHHHTC-----C-SC
T ss_pred             HHHhhc-CCCcEEEecccceeeeeccchhhhc---------cCcEEEEecCCC-CCcC------HHHHhcC-----c-Cc
Confidence            877553 2222566666666533221000000         123333333211 1111      3566554     1 26


Q ss_pred             eEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccC--ccCCCCCCccccccCCCcc--eeeecccccCccc
Q 011777          253 AGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG--FGRTGSHYWGFETQGVIPD--IVTMAKGIGNGLP  328 (477)
Q Consensus       253 a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g--fgr~G~~~~~~~~~gv~pD--ivt~sK~lg~G~p  328 (477)
                      ++|++++.+|++|..+++++++++|.++|++||++||+||+|..  ++..|.....+.   ...|  +.++||++++...
T Consensus       137 ~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d~~~~s~sK~~~~~~g  213 (357)
T 3lws_A          137 ACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA---GLFDSIYISFYKGLGGIAG  213 (357)
T ss_dssp             SEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH---TTSSEEEEESSSTTCCSSC
T ss_pred             ceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH---hcCCEEEEeccccCCCCce
Confidence            77888877776533677899999999999999999999998751  111121111111   1123  4489999964222


Q ss_pred             eEEEEeCHHHHHhhcccc--cc-cCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCcee--eec
Q 011777          329 LGAVVTTPEIANVMAQKI--QF-NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGD--VRG  403 (477)
Q Consensus       329 ig~v~~~~~~~~~~~~~~--~~-~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~--v~g  403 (477)
                       |++++++++++.+....  .+ +.+..++. ++++.++|+... + ..++..++.+++.+.|++    .+.+..  .+.
T Consensus       214 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~-~-~~~~~~~~~~~l~~~L~~----~~g~~~~~~~~  285 (357)
T 3lws_A          214 -AILAGPAAFCQTARIWKRRYGGDLISLYPY-IVSADYYYELRK-D-RMGQYYEQAKQLAEQFNA----LPGVHTTPEVP  285 (357)
T ss_dssp             -EEEEECHHHHHHHHHHHHHTTCCCSCCHHH-HHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHT----STTEEEESSSC
T ss_pred             -EEEEcCHHHHHHHHHHHHHhcCCcccchHH-HHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHh----CCCCeeccCCC
Confidence             99999999988775321  22 23333444 445556666421 2 233445666666666654    333322  245


Q ss_pred             cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC---CCCEEEEeCC---CCCcHHHHHHHHHHHHHHH
Q 011777          404 RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL---HGNVFRIKPP---MCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       404 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~iRi~p~---~~~t~e~i~~~l~~l~~~l  474 (477)
                      .+.++++++...      .......+.+.|.++||++.++..   ...++|++..   +..+++++++++++|.+++
T Consensus       286 ~~~~~~~~~~~~------~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al  356 (357)
T 3lws_A          286 VSNMFHLHFDGQ------AADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF  356 (357)
T ss_dssp             SSSEEEEEEESC------HHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred             cceEEEEEecCC------hHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence            677888887421      112346788899999999988732   1247898765   3468999999999998875

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.91  E-value=4.3e-23  Score=214.62  Aligned_cols=323  Identities=11%  Similarity=0.030  Sum_probs=206.2

Q ss_pred             CCCHHHHHHHHHHHhhccccccc-c-----CChHHHHHHHHHHhhCCCC--CCEEEEeCChHHHHHHHHHHHHhcc----
Q 011777          112 HCHPDVLNAIFEQSKLLQHATTI-Y-----LHHAIADFAEALASKMPGN--LKVVYFVNSGTEANELAMLMARLST----  179 (477)
Q Consensus       112 h~~p~v~~Av~~~l~~~~~~~~~-~-----~~~~~~~l~~~La~~~~~~--~~~v~~~~sGseA~~~Al~~ar~~~----  179 (477)
                      |+++.+.+++.+++....+.... +     ..+...+++++++++++.+  .+.+++++||++|+..+++.++.+.    
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~  154 (497)
T 3mc6_A           75 HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHR  154 (497)
T ss_dssp             CCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence            45689999999998874332211 1     1234567888888888765  5689999999999999999887632    


Q ss_pred             C--CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEe
Q 011777          180 G--NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIA  257 (477)
Q Consensus       180 ~--~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~  257 (477)
                      |  ++.|++..++|+.....+... +.          .+..++... .....+      +++|+++++    +++++|++
T Consensus       155 g~~~~~Vi~~~~~h~~~~~~~~~~-G~----------~~~~v~~~~-~~~~~d------~~~l~~~i~----~~~~~v~~  212 (497)
T 3mc6_A          155 GITEPEIIAPVTAHAGFDKAAYYF-GM----------KLRHVELDP-TTYQVD------LGKVKKFIN----KNTVLLVG  212 (497)
T ss_dssp             CCSSCEEEEETTSCHHHHHHHHHS-CC----------EEEEECBCT-TTCSBC------TTTTGGGCC----SSEEEEEE
T ss_pred             CCCCceEEEeCCccHHHHHHHHHc-CC----------eEEEEecCc-ccCcCC------HHHHHHHHh----hCCEEEEE
Confidence            2  357777777766543332222 11          122232211 011111      356777665    46889999


Q ss_pred             cccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCC-------CCC-CccccccCCCcceee--ecccccCcc
Q 011777          258 ETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRT-------GSH-YWGFETQGVIPDIVT--MAKGIGNGL  327 (477)
Q Consensus       258 epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~-------G~~-~~~~~~~gv~pDivt--~sK~lg~G~  327 (477)
                      +..++++|.+.+    +++|.++|++||+++|+||+|+++.+.       |.. .+.....|+  |+++  ++|.+.+|.
T Consensus       213 ~~p~nptG~~~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~--d~~~~s~~K~l~~~~  286 (497)
T 3mc6_A          213 SAPNFPHGIADD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGV--TSISCDTHKYGFAPK  286 (497)
T ss_dssp             ETTCTTTCCCCS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTC--CEEEEETTTTTCCCS
T ss_pred             ECCCCCCCcCCC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCC--cEEEECchhhcCCCC
Confidence            988888887766    789999999999999999999876432       100 133334454  5554  559888889


Q ss_pred             ceEEEEeCHHHHHhhccc----cccc-----CC--CCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHH
Q 011777          328 PLGAVVTTPEIANVMAQK----IQFN-----TF--GGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQE  393 (477)
Q Consensus       328 pig~v~~~~~~~~~~~~~----~~~~-----t~--~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~  393 (477)
                      ++|+++++++.+......    ...+     ++  +.+....++..++++.+..   +++.++..++.+++++.|++.  
T Consensus       287 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~--  364 (497)
T 3mc6_A          287 GSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQEN--  364 (497)
T ss_dssp             SCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             CceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            999999987766544211    1111     11  1122334444455555444   345666777777777777662  


Q ss_pred             hCCCceee-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777          394 RHDIIGDV-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDY  472 (477)
Q Consensus       394 ~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~  472 (477)
                       .+.+..+ .+.+.++.+...         .....++.+.|.++||.+..+. ..+.+|++++ .+|++++++++++|++
T Consensus       365 -~~g~~~~~~~~~~~v~~~~~---------~~~~~~l~~~L~~~Gi~v~~~~-~~~~~ri~~~-~~t~e~i~~~~~~L~~  432 (497)
T 3mc6_A          365 -IPDLDIMGNPRYSVISFSSK---------TLNIHELSDRLSKKGWHFNALQ-KPVALHMAFT-RLSAHVVDEICDILRT  432 (497)
T ss_dssp             -CTTCEECSCCCSSEEEEECT---------TTTHHHHHHHHHTTTCBCEECC-SSCCEEEECC-TTTTCTHHHHHHHHHH
T ss_pred             -CCCEEEecCCCeeEEEEeCC---------CCCHHHHHHHHHhCCEEEecCC-CCCeEEEEEe-CCCHHHHHHHHHHHHH
Confidence             1222211 234555555421         1125678899999999987653 3456899988 7899999999999999


Q ss_pred             HHhh
Q 011777          473 SMSK  476 (477)
Q Consensus       473 ~l~~  476 (477)
                      ++++
T Consensus       433 ~l~~  436 (497)
T 3mc6_A          433 TVQE  436 (497)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.91  E-value=1.2e-22  Score=209.91  Aligned_cols=316  Identities=15%  Similarity=0.104  Sum_probs=206.0

Q ss_pred             CCCCCHHHHHHHHHHHhhccccccccC--------ChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc---
Q 011777          110 CGHCHPDVLNAIFEQSKLLQHATTIYL--------HHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS---  178 (477)
Q Consensus       110 lGh~~p~v~~Av~~~l~~~~~~~~~~~--------~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~---  178 (477)
                      .+|.+|++++++.+++..   .+ .|.        .+...+++++++++++.+. .+++++||++|+..|+++++.+   
T Consensus        75 ~~~~~p~v~~~~~~~~~~---~~-~~~~~~~~~g~~~l~~~l~~~la~~~g~~~-~~~~~~ggt~a~~~al~~~~~~~~~  149 (474)
T 1wyu_B           75 TMKYNPKLHEEAARLFAD---LH-PYQDPRTAQGALRLMWELGEYLKALTGMDA-ITLEPAAGAHGELTGILIIRAYHED  149 (474)
T ss_dssp             CCCCCCHHHHHHHHTTSS---CC-TTSCGGGCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHh---cC-CCCchhhChHHHHHHHHHHHHHHHHHCCCc-eeecChHHHHHHHHHHHHHHHHHHh
Confidence            357789999998876221   11 121        2457788999999886543 4678899999999999888653   


Q ss_pred             ----cCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeE
Q 011777          179 ----TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAG  254 (477)
Q Consensus       179 ----~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~  254 (477)
                          +++++||+.+ .+|+....+....            |...+.+|.......+      +++|+++++    +++++
T Consensus       150 ~Gd~~~r~~Vlv~~-~~h~~~~~~~~~~------------G~~vv~v~~~~~~~~d------~~~L~~~i~----~~t~~  206 (474)
T 1wyu_B          150 RGEGRTRRVVLVPD-SAHGSNPATASMA------------GYQVREIPSGPEGEVD------LEALKRELG----PHVAA  206 (474)
T ss_dssp             TTCTTTCCEEEEET-TSCTHHHHHHHHT------------TCEEEEECBCTTSSBC------HHHHHHHCS----TTEEE
T ss_pred             cCCccCCCEEEEeC-CcChhhHHHHHHC------------CCEEEEecCCCCCCcC------HHHHHHhhC----CCceE
Confidence                1234777776 5556555443332            2222222211111112      578888875    46888


Q ss_pred             EEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeee--cccccC-----cc
Q 011777          255 FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTM--AKGIGN-----GL  327 (477)
Q Consensus       255 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~--sK~lg~-----G~  327 (477)
                      |++++.+ +.|.+.   +.+++|.++|++||+++|+||+|..+ ..| . .....++  +|++++  +|.+++     |+
T Consensus       207 v~~~~pn-~~G~~~---~~l~~i~~l~~~~g~~li~Dea~~~~-~~g-~-~~~~~~g--~di~~~s~~K~~~~p~g~gG~  277 (474)
T 1wyu_B          207 LMLTNPN-TLGLFE---RRILEISRLCKEAGVQLYYDGANLNA-IMG-W-ARPGDMG--FDVVHLNLHKTFTVPHGGGGP  277 (474)
T ss_dssp             EEECSSC-TTSCCC---TTHHHHHHHHHHHTCEEEEEGGGGGG-TTT-T-CCHHHHT--CSEEECCTTTTTCCCCTTSCC
T ss_pred             EEEECCC-CCcccC---CCHHHHHHHHHHcCCEEEEeCchhhh-hcc-C-CCcccCC--CcEEEEeCccccccCCCCCCC
Confidence            8888754 577652   34999999999999999999999643 233 1 1112223  688765  799963     36


Q ss_pred             ceEEEEeCHHHHHhhccc-------------------ccccCCCCcHHHHHHHHHHHHhhchhhH---HHHHHHHHHHHH
Q 011777          328 PLGAVVTTPEIANVMAQK-------------------IQFNTFGGNPVCSAGGLAVLRVIDKERR---QAHCADVGSHLL  385 (477)
Q Consensus       328 pig~v~~~~~~~~~~~~~-------------------~~~~t~~~~~~~~aaa~a~l~~l~~~~~---~~~~~~~~~~l~  385 (477)
                      ++|++++++++++.+...                   ....++++|+++++++++.++.+..+.+   .+++.++.+++.
T Consensus       278 ~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~  357 (474)
T 1wyu_B          278 GSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLK  357 (474)
T ss_dssp             CCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988776521                   0113345788889989888876544433   677778888888


Q ss_pred             HHHHHHHHhCCCceeeecccee--EEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC---CCCEEEEeCCCCCcH
Q 011777          386 GRLRTLQERHDIIGDVRGRGLM--VGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL---HGNVFRIKPPMCFTK  460 (477)
Q Consensus       386 ~~L~~l~~~~~~~~~v~g~g~~--~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~iRi~p~~~~t~  460 (477)
                      ++|+++  .+..+.   +.+.+  +++.+ ..       .....++.+.|.++||++.....   ..+++||+++..+|+
T Consensus       358 ~~L~~~--g~~~~~---~~~~~~~~~~~~-~~-------~~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~  424 (474)
T 1wyu_B          358 ELLKEK--GYRVPY---DGPSMHEFVAQP-PE-------GFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAK  424 (474)
T ss_dssp             HHHHHT--TCBCSS---CSSCCSCEEEBC-ST-------TCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCH
T ss_pred             HHHhhc--CcEecC---CCCcceEEEEEc-CC-------CCCHHHHHHHHHHCCccccccccccccCCEEEEEeecCCCH
Confidence            888774  222211   11222  34433 10       11245788899999998632111   247899999988899


Q ss_pred             HHHHHHHHHHHHHHh
Q 011777          461 DDADFLVDALDYSMS  475 (477)
Q Consensus       461 e~i~~~l~~l~~~l~  475 (477)
                      +++++++++|+++++
T Consensus       425 e~id~~~~~L~~~~~  439 (474)
T 1wyu_B          425 ETLEAFAEAMGALLK  439 (474)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998875

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.91  E-value=2.3e-23  Score=207.11  Aligned_cols=325  Identities=15%  Similarity=0.055  Sum_probs=198.5

Q ss_pred             CcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCce
Q 011777          104 GIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG  183 (477)
Q Consensus       104 g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~  183 (477)
                      +.+.+++| .||+|++|+.+.+..    ...+..+...+++++|+++++.  +..++++||++|++.+++.+... +...
T Consensus        19 ~~~~~~~g-~~p~v~~ai~~~~~~----~~~~~~~~~~~l~~~la~~~~~--~~~i~~~~g~~a~~~a~~~~~~~-g~~~   90 (359)
T 3pj0_A           19 GNGPRNVG-VLTEALQNIDDNLES----DIYGNGAVIEDFETKIAKILGK--QSAVFFPSGTMAQQIALRIWADR-KENR   90 (359)
T ss_dssp             SSSCCBHH-HHHHHTTTSCTTCBC----CBTTBSHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHHHHH-HTCC
T ss_pred             CCCccccC-CCHHHHHHHHhhccc----CcccCCHHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHHHhc-CCCc
Confidence            33334444 467888887763322    2223467789999999999865  45577799999999999987653 3334


Q ss_pred             EEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCC
Q 011777          184 MIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGV  263 (477)
Q Consensus       184 ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~  263 (477)
                      +|+..+.+|............         .|...+.++.. ....  |    +++++++     .+++++|++++.+++
T Consensus        91 vvi~~~~~~~~~~~~~~~~~~---------~g~~~~~v~~~-~~~~--d----~~~l~~~-----~~~~~~v~~~~p~n~  149 (359)
T 3pj0_A           91 RVAYHPLSHLEIHEQDGLKEL---------QQITPLLLGTA-NQLL--T----IDDIKSL-----REPVSSVLIELPQRE  149 (359)
T ss_dssp             EEEECTTCHHHHSSTTHHHHH---------HCCEEEECSCT-TSCC--C----HHHHHTC-----SSCCSEEEEESSBGG
T ss_pred             EEEEeccceeeehhcchHHHh---------cCceEEecCCc-CCCc--C----HHHHHhc-----cCCceEEEEEecccC
Confidence            566666665433221111000         02222222221 1111  1    4666654     246788888877666


Q ss_pred             CCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCcc--CCCCCCccccccCCCccee--eecccccCccceEEEEeCHHHH
Q 011777          264 GGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG--RTGSHYWGFETQGVIPDIV--TMAKGIGNGLPLGAVVTTPEIA  339 (477)
Q Consensus       264 ~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfg--r~G~~~~~~~~~gv~pDiv--t~sK~lg~G~pig~v~~~~~~~  339 (477)
                      +|...++.+++++|.++|++||++||+||+|..+.  ..|....  + .....|++  ++||+++++.. |+++++++++
T Consensus       150 ~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~--~-~~~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~  225 (359)
T 3pj0_A          150 IGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAE--E-ICALFDSVYVSFYKGIGGIAG-AILAGNDDFV  225 (359)
T ss_dssp             GTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHH--H-HHTTCSEEEEESSSTTCCSSC-EEEEECHHHH
T ss_pred             CCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHH--H-hhccCCEEEEeccccCCCcce-EEEECCHHHH
Confidence            54467789999999999999999999999876332  1120111  1 11223555  78999986544 8888999999


Q ss_pred             Hhhccc--ccc-cCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCcee--eeccceeEEEEEee
Q 011777          340 NVMAQK--IQF-NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGD--VRGRGLMVGMELVT  414 (477)
Q Consensus       340 ~~~~~~--~~~-~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~--v~g~g~~~~i~~~~  414 (477)
                      +.+...  ..+ +++..++.+ +++.++++...  +..++..++.+++.+.|+++    +.+..  .+..+.++++.+..
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~-~a~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~  298 (359)
T 3pj0_A          226 QEAKIWKRRYGGDLISLYPYI-LSADYYFEKRI--GKMAEYFEAAKGLAERFNSC----SGVKTVPEVPVSNMFHVYFEN  298 (359)
T ss_dssp             HHHHHHHHHTTCCCSCCHHHH-HHHHHHHHHHG--GGHHHHHHHHHHHHHHHHTS----TTEEEESSSCSSSEEEEEESS
T ss_pred             HHHHHHHHHhCCCcchhHHHH-HHHHHHHHHHH--HHhHHHHHHHHHHHHHHhhC----CCceeeccCCcceEEEEEecC
Confidence            887642  122 333444444 44445665432  33445666677777766553    32322  23456677777632


Q ss_pred             CCCCCCccHHHHHHHHHHHHHcCceeeccCCC----CCEEEEeCC---CCCcHHHHHHHHHHHHHHH
Q 011777          415 DRKEKTPAKAETAVLFEKLRELGVLVGKGGLH----GNVFRIKPP---MCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~---~~~t~e~i~~~l~~l~~~l  474 (477)
                            +.......+.+.|.++||++.++..+    .+++|++..   ...+.+++++++++|.+++
T Consensus       299 ------~~~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~l  359 (359)
T 3pj0_A          299 ------SADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKEL  359 (359)
T ss_dssp             ------CHHHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred             ------ccchhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhcC
Confidence                  12233567889999999999987322    257888654   3368899999999998753

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.90  E-value=3.4e-22  Score=203.02  Aligned_cols=330  Identities=15%  Similarity=0.060  Sum_probs=193.4

Q ss_pred             EEeecCCcccccCCCCCHHHHHHHHHHHhh-ccccc--cc-c----CChHHHHHH-HHHHhhCCCCCCEE-EEeCChHHH
Q 011777           98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKL-LQHAT--TI-Y----LHHAIADFA-EALASKMPGNLKVV-YFVNSGTEA  167 (477)
Q Consensus        98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~-~~~~~--~~-~----~~~~~~~l~-~~La~~~~~~~~~v-~~~~sGseA  167 (477)
                      .+++.++..     +.||+|++|+.+++.. ..+..  .. +    ..+...+++ +++++.++.  +.+ ++++||++|
T Consensus        34 ~i~l~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~v~~~~Gs~a  106 (425)
T 3ecd_A           34 QVELIASEN-----IVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNA--GHANVQPHSGAQA  106 (425)
T ss_dssp             SEECCTTCC-----CCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTC--SEEECCCSSHHHH
T ss_pred             ceeeecccC-----CCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCC--CCceeecCchHHH
Confidence            466655442     3489999999998843 21111  01 1    112445555 677777754  344 459999999


Q ss_pred             HHHHHHHHHhccCCceEEEEccCccCCc-ccccc-cccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHh
Q 011777          168 NELAMLMARLSTGNLGMIALRNAYHGGS-SGTIG-LTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHID  245 (477)
Q Consensus       168 ~~~Al~~ar~~~~~~~ii~~~~~yhG~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~  245 (477)
                      ++.+++.+  ..+++.|++.+++||+.. .+... ..+          .++..++.+.... .+..|    +++|+++++
T Consensus       107 ~~~al~~~--~~~gd~Vi~~~~~~~~~~~~~~~~~~~g----------~~~~~~~~~~~~~-~~~~d----~~~l~~~i~  169 (425)
T 3ecd_A          107 NGAVMLAL--AKPGDTVLGMSLDAGGHLTHGAKPALSG----------KWFNALQYGVSRD-TMLID----YDQVEALAQ  169 (425)
T ss_dssp             HHHHHHHH--CCTTCEEEEECC----------------------------CEEEEECCCTT-TSSCC----HHHHHHHHH
T ss_pred             HHHHHHHc--cCCCCEEEEcccccccceecchhhhhcc----------cceeeeecCCCcc-cCccC----HHHHHHHHh
Confidence            99999876  346788999999998832 22211 111          1122222221100 01112    578888886


Q ss_pred             ccCCCCeeEEEec-ccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcc-cCccCCCCCCccccccCCCccee--eecc
Q 011777          246 FGTSGKVAGFIAE-TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQ-TGFGRTGSHYWGFETQGVIPDIV--TMAK  321 (477)
Q Consensus       246 ~~~~~~~a~vi~e-pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-~gfgr~G~~~~~~~~~gv~pDiv--t~sK  321 (477)
                      .   .++++|+++ |++|       ....+++|.++|++||++||+||+| .|+.+.| ..+...  . .+|++  ++||
T Consensus       170 ~---~~~~~v~~~~~~~~-------~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~-~~~~~~--~-~~di~~~s~sK  235 (425)
T 3ecd_A          170 Q---HKPSLIIAGFSAYP-------RKLDFARFRAIADSVGAKLMVDMAHIAGVIAAG-RHANPV--E-HAHVVTSTTHK  235 (425)
T ss_dssp             H---HCCSEEEEECSCCC-------SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTT-SSCCGG--G-TCSEEEEESSG
T ss_pred             h---cCCcEEEEccccCC-------CcCCHHHHHHHHHHcCCEEEEECcChHhhhhcc-cccCch--h-cCcEEEecCCc
Confidence            2   246777777 4443       2344899999999999999999995 5555555 322211  1 14665  5679


Q ss_pred             cccCccceEEEEeC-HHHHHhhccccccc-CCCCcHHHHHHHHHHHHh-hch--hhHHHHHHHHHHHHHHHHHHHHHhCC
Q 011777          322 GIGNGLPLGAVVTT-PEIANVMAQKIQFN-TFGGNPVCSAGGLAVLRV-IDK--ERRQAHCADVGSHLLGRLRTLQERHD  396 (477)
Q Consensus       322 ~lg~G~pig~v~~~-~~~~~~~~~~~~~~-t~~~~~~~~aaa~a~l~~-l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~  396 (477)
                      ++ +|+++|+++++ +++.+.+......+ +.+.++..++++.+++.. +++  +++.++++++.+++++.|.+.  ...
T Consensus       236 ~l-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~  312 (425)
T 3ecd_A          236 TL-RGPRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG--GVD  312 (425)
T ss_dssp             GG-CCCSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT--TCE
T ss_pred             cc-CCCCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC--CCe
Confidence            99 45688999998 56777665433222 223344444444444433 333  356778888888888888763  111


Q ss_pred             CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceee----ccC----CCCCEEEEeCCCCCc----HHHHH
Q 011777          397 IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVG----KGG----LHGNVFRIKPPMCFT----KDDAD  464 (477)
Q Consensus       397 ~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~~----~~~~~iRi~p~~~~t----~e~i~  464 (477)
                      ... ..+.+.++++.+....       .....+.+.|.++||++.    |+.    ...+.+|++++...+    +++++
T Consensus       313 ~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~  384 (425)
T 3ecd_A          313 LVT-GGTDNHLLLVDLRPKG-------LKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFR  384 (425)
T ss_dssp             EGG-GSCSSSEEEEECGGGT-------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHH
T ss_pred             ecc-CCCCceEEEEEeCCCC-------CCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHH
Confidence            111 1135667777763211       124567788888999998    431    123589998665554    99999


Q ss_pred             HHHHHHHHHHhh
Q 011777          465 FLVDALDYSMSK  476 (477)
Q Consensus       465 ~~l~~l~~~l~~  476 (477)
                      +++++|++++++
T Consensus       385 ~~~~~l~~~l~~  396 (425)
T 3ecd_A          385 EVGRLILEVFEA  396 (425)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999988753

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.90  E-value=4.2e-23  Score=206.20  Aligned_cols=313  Identities=15%  Similarity=0.100  Sum_probs=200.5

Q ss_pred             cCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEc
Q 011777          109 SCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALR  188 (477)
Q Consensus       109 ~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~  188 (477)
                      .+|++++.+.+++.+++.+.......+..+...++++.++++++.  +.+++++||++|++.|++.++ ..+++.|++..
T Consensus         6 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~~~sGt~al~~al~~~~-~~~gd~Vi~~~   82 (367)
T 3nyt_A            6 DLKNQQARIKDKIDAGIQRVLRHGQYILGPEVTELEDRLADFVGA--KYCISCANGTDALQIVQMALG-VGPGDEVITPG   82 (367)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHTT-CCTTCEEEEES
T ss_pred             cccccccccCHHHHHHHHHHHhcCCccCChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhC-CCCcCEEEECC
Confidence            345555545444444443321111223567788999999999865  589999999999999999764 24567899999


Q ss_pred             cCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeee
Q 011777          189 NAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVE  268 (477)
Q Consensus       189 ~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~  268 (477)
                      ++|++........+             ...+.++.... .+..|    +++++++++    +++++|+.++   ..|...
T Consensus        83 ~~~~~~~~~~~~~G-------------~~~~~~~~~~~-~~~~d----~~~l~~~i~----~~~~~v~~~~---~~G~~~  137 (367)
T 3nyt_A           83 FTYVATAETVALLG-------------AKPVYVDIDPR-TYNLD----PQLLEAAIT----PRTKAIIPVS---LYGQCA  137 (367)
T ss_dssp             SSCTHHHHHHHHTT-------------CEEEEECBCTT-TCSBC----GGGTGGGCC----TTEEEECCBC---GGGCCC
T ss_pred             CccHHHHHHHHHcC-------------CEEEEEecCCc-cCCcC----HHHHHHhcC----cCCcEEEeeC---CccChh
Confidence            99988665543332             11111111100 01111    356766664    4788888443   345444


Q ss_pred             CCchhHHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCcceeeec----ccccC-ccceEEEEe-CHHHHHh
Q 011777          269 LAPGYLKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIVTMA----KGIGN-GLPLGAVVT-TPEIANV  341 (477)
Q Consensus       269 ~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDivt~s----K~lg~-G~pig~v~~-~~~~~~~  341 (477)
                      +    +++|.++|++||+++|+||+|+ |..+.|      ...+...|++++|    |.+++ |. .|++++ ++++.+.
T Consensus       138 ~----~~~i~~la~~~~~~li~D~a~~~g~~~~~------~~~~~~~di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~  206 (367)
T 3nyt_A          138 D----FDAINAIASKYGIPVIEDAAQSFGASYKG------KRSCNLSTVACTSFFPSAPLGCYGD-GGAIFTNDDELATA  206 (367)
T ss_dssp             C----HHHHHHHHHHTTCCBEEECTTTTTCEETT------EETTSSSSEEEEECCTTSSSCCSSC-CEEEEESCHHHHHH
T ss_pred             h----HHHHHHHHHHcCCEEEEECccccCCeECC------eeccCCCCEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHH
Confidence            4    9999999999999999999997 232333      1222333888776    99998 76 788888 4777766


Q ss_pred             hccccc------------ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCcee-eeccceeE
Q 011777          342 MAQKIQ------------FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGD-VRGRGLMV  408 (477)
Q Consensus       342 ~~~~~~------------~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-v~g~g~~~  408 (477)
                      +.....            +.++..+++.++++++.++.+  +++.++.+++.+++++.|.++....+.... ......++
T Consensus       207 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  284 (367)
T 3nyt_A          207 IRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIF--EEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQY  284 (367)
T ss_dssp             HHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSE
T ss_pred             HHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEE
Confidence            643221            346778899999998888765  456677788888888888776211111100 01111122


Q ss_pred             EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--------C--------------CCEEEEeCCCCCcHHHHHHH
Q 011777          409 GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--------H--------------GNVFRIKPPMCFTKDDADFL  466 (477)
Q Consensus       409 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--------~--------------~~~iRi~p~~~~t~e~i~~~  466 (477)
                      .+.+        +   ....+.+.|.++||.+.....        +              ...+|+......|++|++++
T Consensus       285 ~~~~--------~---~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v  353 (367)
T 3nyt_A          285 TVRM--------D---NRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKII  353 (367)
T ss_dssp             EEEC--------S---SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHH
T ss_pred             EEEe--------C---CHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHH
Confidence            2222        1   145788899999998865421        0              24789988888999999999


Q ss_pred             HHHHHHH
Q 011777          467 VDALDYS  473 (477)
Q Consensus       467 l~~l~~~  473 (477)
                      ++.+.+.
T Consensus       354 ~~~~~~~  360 (367)
T 3nyt_A          354 CAALTNL  360 (367)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHHH
Confidence            9998754

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.90  E-value=5.7e-22  Score=205.96  Aligned_cols=337  Identities=13%  Similarity=0.069  Sum_probs=207.4

Q ss_pred             CHHHHHHHHHHHhhcc------ccccccCChHHHHHHHHHHhhCC---CCCCEEEEeCChHHHHHHHHHHHHhccC---C
Q 011777          114 HPDVLNAIFEQSKLLQ------HATTIYLHHAIADFAEALASKMP---GNLKVVYFVNSGTEANELAMLMARLSTG---N  181 (477)
Q Consensus       114 ~p~v~~Av~~~l~~~~------~~~~~~~~~~~~~l~~~La~~~~---~~~~~v~~~~sGseA~~~Al~~ar~~~~---~  181 (477)
                      +.++.+++.+.+....      +....+..+.+.++++.+.++.+   .+.++|++|+|+++|+..++++... .+   +
T Consensus       103 P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~-~gd~~~  181 (498)
T 3ihj_A          103 PEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVS-GGGKSR  181 (498)
T ss_dssp             CHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCC-CCGGGS
T ss_pred             CHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcC-CCCCCC
Confidence            5667777777776532      22223334567778888876642   4567899999999999999986543 22   3


Q ss_pred             ceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCC-CeeEEEeccc
Q 011777          182 LGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG-KVAGFIAETI  260 (477)
Q Consensus       182 ~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~-~~a~vi~epi  260 (477)
                      +.|++..++|+.+.......             |...+.++......|+.|    +++|++.++..... ++++|++...
T Consensus       182 d~Vlv~~p~y~~~~~~~~~~-------------g~~~v~~~~~~~~~~~~d----~~~le~~l~~~~~~~~~k~i~l~np  244 (498)
T 3ihj_A          182 TGVMIPIPQYPLYSAVISEL-------------DAIQVNYYLDEENCWALN----VNELRRAVQEAKDHCDPKVLCIINP  244 (498)
T ss_dssp             EEEEEEESCCTHHHHHHHHT-------------TCEEEEEECBGGGTTBCC----HHHHHHHHHHHTTTSEEEEEEEESS
T ss_pred             CEEEEeCCCchhHHHHHHHc-------------CCEEEEeeccccccCCCC----HHHHHHHHHhhhccCCCeEEEEECC
Confidence            48999999998775544332             222222222111112222    57888888732111 4666666555


Q ss_pred             CCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC-CCcccccc----C------C-Ccceeeecccc-c-Cc
Q 011777          261 QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS-HYWGFETQ----G------V-IPDIVTMAKGI-G-NG  326 (477)
Q Consensus       261 ~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~-~~~~~~~~----g------v-~pDivt~sK~l-g-~G  326 (477)
                      +|++| .+++.+.+++|.++|++||++||+||+|..+.+.+. .+..+...    +      + ..-+.+|||.+ | .|
T Consensus       245 ~NPTG-~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G  323 (498)
T 3ihj_A          245 GNPTG-QVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECG  323 (498)
T ss_dssp             CTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSS
T ss_pred             CCCCC-CcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcc
Confidence            66777 456888899999999999999999999998766541 12222110    0      1 01133789999 5 69


Q ss_pred             cceEEEE---eCHHHHHhhcccccccCCCCcHHHHHHHHHHHHh-----------hch-hhHHHHHHHHHHHHHHHHHHH
Q 011777          327 LPLGAVV---TTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRV-----------IDK-ERRQAHCADVGSHLLGRLRTL  391 (477)
Q Consensus       327 ~pig~v~---~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~-----------l~~-~~~~~~~~~~~~~l~~~L~~l  391 (477)
                      +|+||++   .++++++.+..... ...+.+.++++++.++++.           +++ +...++++++.+++.+.|++ 
T Consensus       324 ~R~G~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-  401 (498)
T 3ihj_A          324 YRGGYMEVINLHPEIKGQLVKLLS-VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQ-  401 (498)
T ss_dssp             SCCEEEEEESCCHHHHHHHHHHHH-HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             cceEEEEEecCCHHHHHHHHHHHh-ccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            9999998   68999888765432 4456788888877776641           111 22334445555555555543 


Q ss_pred             HHhCCCceeeeccc-eeEEEEEeeCCCCCC---ccHHHHHH--HHHHHHHcCceeeccCCCC-----CEEEEeCCCCCcH
Q 011777          392 QERHDIIGDVRGRG-LMVGMELVTDRKEKT---PAKAETAV--LFEKLRELGVLVGKGGLHG-----NVFRIKPPMCFTK  460 (477)
Q Consensus       392 ~~~~~~~~~v~g~g-~~~~i~~~~~~~~~~---~~~~~~~~--~~~~l~~~Gv~v~~~~~~~-----~~iRi~p~~~~t~  460 (477)
                         ++.+......| +++++.+..+.....   ......+.  +.+.|.++||.+.++..++     +++|+++  ..++
T Consensus       402 ---~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~--~~~~  476 (498)
T 3ihj_A          402 ---VPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTI--LPPV  476 (498)
T ss_dssp             ---STTEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEEC--CSCH
T ss_pred             ---CCCcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEe--CCCH
Confidence               44444444454 445555531100000   00000122  3556677899999874432     4899976  4899


Q ss_pred             HHHHHHHHHHHHHHhh
Q 011777          461 DDADFLVDALDYSMSK  476 (477)
Q Consensus       461 e~i~~~l~~l~~~l~~  476 (477)
                      +++++++++|.+++++
T Consensus       477 e~l~~~i~~L~~~~~~  492 (498)
T 3ihj_A          477 EKLKTVLQKVKDFHIN  492 (498)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988764

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.90  E-value=2.2e-23  Score=211.59  Aligned_cols=319  Identities=15%  Similarity=0.076  Sum_probs=188.4

Q ss_pred             CCCHHHHHHHHHHHhhcc---ccc-----cccCChHHHH-HHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCc
Q 011777          112 HCHPDVLNAIFEQSKLLQ---HAT-----TIYLHHAIAD-FAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNL  182 (477)
Q Consensus       112 h~~p~v~~Av~~~l~~~~---~~~-----~~~~~~~~~~-l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~  182 (477)
                      +.||+|++|+.+++....   +..     .....+...+ .++++++.++.+.+.+ +++||++|++.+++.+.  .+++
T Consensus        41 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v-~~~sGs~a~~~a~~~~~--~~gd  117 (420)
T 3gbx_A           41 YTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANV-QPHSGSQANFAVYTALL--QPGD  117 (420)
T ss_dssp             CCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEEC-CCSSHHHHHHHHHHHHC--CTTC
T ss_pred             CCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCcee-EecCcHHHHHHHHHHhc--CCCC
Confidence            369999999999885321   111     1111233344 4478888876654444 46778999999998763  3567


Q ss_pred             eEEEEccCccCCccccc--ccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEec-c
Q 011777          183 GMIALRNAYHGGSSGTI--GLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAE-T  259 (477)
Q Consensus       183 ~ii~~~~~yhG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~e-p  259 (477)
                      .|++..+.|++......  ...+.          ++..++.+..  ..+..|    +++|+++++.   +++++|+++ |
T Consensus       118 ~v~~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~--~~~~~d----~~~l~~~i~~---~~~~~v~~~~~  178 (420)
T 3gbx_A          118 TVLGMNLAQGGHLTHGSPVNFSGK----------LYNIVPYGID--ESGKID----YDEMAKLAKE---HKPKMIIGGFS  178 (420)
T ss_dssp             EEEEEEEC------------CHHH----------HSEEEEEEEC--TTCSCC----HHHHHHHHHH---HCCSEEEECCT
T ss_pred             EEEecchhhcceeccchhhhhccc----------ceeEEeccCC--ccCCcC----HHHHHHHHHh---cCCeEEEEecC
Confidence            78887777765321111  11110          1122221111  111112    5788888863   246777775 4


Q ss_pred             cCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCcceee--ecccccCccceEEEEeCH
Q 011777          260 IQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGLPLGAVVTTP  336 (477)
Q Consensus       260 i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pig~v~~~~  336 (477)
                      +++   ...+    +++|+++|++||++||+||+|+ |+.+.| .+... . . .+|+++  +||+++ |.+.|++++++
T Consensus       179 ~~~---~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~-~~~~~-~-~-~~di~~~s~sK~~~-g~~gg~~~~~~  246 (420)
T 3gbx_A          179 AYS---GVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAG-VYPNP-V-P-HAHVVTTTTHKTLA-GPRGGLILAKG  246 (420)
T ss_dssp             TCC---SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTT-SSCCS-T-T-TSSEEEEESSGGGC-SCSCEEEEESS
T ss_pred             ccC---CccC----HHHHHHHHHHcCCEEEEECCcchhceecc-cCCcc-c-c-cCCEEEeecccCCC-CCCceEEEEcC
Confidence            442   2333    8999999999999999999974 555555 22211 1 1 278876  679997 44559999987


Q ss_pred             ---HHHHhhcccccccCCCCc-HHHHHHHHHHHHhh-ch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceeee--cccee
Q 011777          337 ---EIANVMAQKIQFNTFGGN-PVCSAGGLAVLRVI-DK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDVR--GRGLM  407 (477)
Q Consensus       337 ---~~~~~~~~~~~~~t~~~~-~~~~aaa~a~l~~l-~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~--g~g~~  407 (477)
                         ++.+.+....+.++++.+ ...++++.+++..+ ++  +++.+++.++.+++++.|.+.    +. ..+.  ..+.+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~-~~~~~~~~~~~  321 (420)
T 3gbx_A          247 GDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR----GY-KVVSGGTENHL  321 (420)
T ss_dssp             CCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT----TC-EEGGGSCSSSE
T ss_pred             CcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc----CC-eeccCCCCCeE
Confidence               787777654444444333 34444434344433 22  356777888888888887763    21 1122  35667


Q ss_pred             EEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeec-------cCCC-CCEEEEeCCCC----CcHHHHHHHHHHHHHHHh
Q 011777          408 VGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGK-------GGLH-GNVFRIKPPMC----FTKDDADFLVDALDYSMS  475 (477)
Q Consensus       408 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~-------~~~~-~~~iRi~p~~~----~t~e~i~~~l~~l~~~l~  475 (477)
                      +++.+....       .....+.+.|.++||++.+       +..+ .+.+||+++..    .+++++++++++|+++++
T Consensus       322 ~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~  394 (420)
T 3gbx_A          322 FLLDLVDKN-------LTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLD  394 (420)
T ss_dssp             EEEECGGGT-------CCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCC-------CCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHh
Confidence            777763211       1245677888889999987       2222 35699998766    458999999999999876


Q ss_pred             h
Q 011777          476 K  476 (477)
Q Consensus       476 ~  476 (477)
                      +
T Consensus       395 ~  395 (420)
T 3gbx_A          395 N  395 (420)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.90  E-value=2.9e-22  Score=202.87  Aligned_cols=286  Identities=14%  Similarity=0.033  Sum_probs=191.4

Q ss_pred             cCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccc---cccccCCCCCCCC
Q 011777          135 YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGT---IGLTALNTWKYPI  211 (477)
Q Consensus       135 ~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~---~~~~~~~~~~~~~  211 (477)
                      ..++...+++++++++++.  +.+++++||++|+..+++...  .+++.|++.++.|++.....   ...          
T Consensus        59 ~~~~~~~~l~~~ia~~~g~--~~~i~~~~g~~ai~~~~~~l~--~~gd~Vl~~~~~y~~~~~~~~~~~~~----------  124 (404)
T 1e5e_A           59 LGNPTVSNLEGKIAFLEKT--EACVATSSGMGAIAATVLTIL--KAGDHLISDECLYGCTHALFEHALTK----------  124 (404)
T ss_dssp             TCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC--CTTCEEEEESCCCHHHHHHHHTHHHH----------
T ss_pred             CcChHHHHHHHHHHHHhCC--CcEEEeCChHHHHHHHHHHHh--CCCCEEEEeCCCchhHHHHHHHHHHH----------
Confidence            4467788999999999865  478899999999999998653  35678999999998754411   111          


Q ss_pred             CCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHH-hCcEEEE
Q 011777          212 PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK-AGGVCIA  290 (477)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~-~gillI~  290 (477)
                        .|...+.++..       |    .+++++.++    +++++|++++++|++|.+.+    +++|.++|++ ||+++|+
T Consensus       125 --~g~~~~~v~~~-------d----~~~l~~~i~----~~t~~v~l~~p~NptG~v~~----l~~i~~la~~~~~~~li~  183 (404)
T 1e5e_A          125 --FGIQVDFINTA-------I----PGEVKKHMK----PNTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIA  183 (404)
T ss_dssp             --TTCEEEEECTT-------S----TTHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEE
T ss_pred             --cCCEEEEECCC-------C----HHHHHHhcC----CCCcEEEEECCCCCCCcccC----HHHHHHHHHhhcCCEEEE
Confidence              12222222211       1    367887775    46889999998899997775    9999999999 9999999


Q ss_pred             cCcccCccCCCCCCccccccCCCcceeeecccccC-ccce-EEEEeCHHHHH-hhccccccc-CCCCcHHHHHHHHHHHH
Q 011777          291 DEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGN-GLPL-GAVVTTPEIAN-VMAQKIQFN-TFGGNPVCSAGGLAVLR  366 (477)
Q Consensus       291 DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~-G~pi-g~v~~~~~~~~-~~~~~~~~~-t~~~~~~~~aaa~a~l~  366 (477)
                      ||+|+.+.+.  ..+  + ++....+.++||.+++ |+|+ |++++++++++ .+....... +.+.+++.+.++.++++
T Consensus       184 De~~~~~~~~--~~~--~-~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~  258 (404)
T 1e5e_A          184 DNTFCSPMIT--NPV--D-FGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLS  258 (404)
T ss_dssp             ECTTTCTTTC--CGG--G-GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHT
T ss_pred             ECCCchhhhC--Ccc--c-cCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHh
Confidence            9999976432  122  2 3443334478999996 7998 99999999887 776654433 45678999999888887


Q ss_pred             hhchhhHHHHHHHHHHHHHHHHHHHH----HhCCCce----------eeeccceeEEEEEeeCCCCCCccHHHHHHHHHH
Q 011777          367 VIDKERRQAHCADVGSHLLGRLRTLQ----ERHDIIG----------DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEK  432 (477)
Q Consensus       367 ~l~~~~~~~~~~~~~~~l~~~L~~l~----~~~~~~~----------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~  432 (477)
                      .+  +...++..++.+.+.+.+++..    ..++.+.          ..++.|.|+.+++..        .  .....+.
T Consensus       259 ~~--~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~--------~--~~~~~~~  326 (404)
T 1e5e_A          259 TL--NIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS--------G--FEGAKKL  326 (404)
T ss_dssp             TH--HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT--------H--HHHHHHH
T ss_pred             HH--HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC--------C--HHHHHHH
Confidence            43  2233444445555544444321    0011110          123458888887621        1  2345556


Q ss_pred             HHHcCceeecc--C--------------------------CCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          433 LRELGVLVGKG--G--------------------------LHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       433 l~~~Gv~v~~~--~--------------------------~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +.+.||++...  |                          ...+++||+++.    |+++++++.|++++++
T Consensus       327 l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~~  394 (404)
T 1e5e_A          327 LDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDA  394 (404)
T ss_dssp             HHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred             HHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHH
Confidence            67778854321  1                          114789998876    7888888888887753

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.90  E-value=2.6e-22  Score=200.50  Aligned_cols=309  Identities=13%  Similarity=0.054  Sum_probs=199.4

Q ss_pred             CCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHh-ccCCceEEEEccC
Q 011777          112 HCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARL-STGNLGMIALRNA  190 (477)
Q Consensus       112 h~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~-~~~~~~ii~~~~~  190 (477)
                      ..+|++++++.++++...+    ++.+...++++.|+++++.  +++++++||++|++.+++.++. ..++++|++..++
T Consensus        10 ~~~~~v~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~   83 (375)
T 2fnu_A           10 CLDKEDKKAVLEVLNSKQL----TQGKRSLLFEEALCEFLGV--KHALVFNSATSALLTLYRNFSEFSADRNEIITTPIS   83 (375)
T ss_dssp             CCCHHHHHHHHHHHTSSCC----SSSHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSS
T ss_pred             CCCHHHHHHHHHHHHcCcc----cCChHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCc
Confidence            3589999999998875321    2356678999999999865  4899999999999999997631 2356789999999


Q ss_pred             ccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCC
Q 011777          191 YHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELA  270 (477)
Q Consensus       191 yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~  270 (477)
                      ||+........             |...+.++......++      ++++++.++    +++++|++...   +|.+.+ 
T Consensus        84 ~~~~~~~~~~~-------------g~~~~~~~~~~~~~~d------~~~l~~~i~----~~~~~v~~~~~---tG~~~~-  136 (375)
T 2fnu_A           84 FVATANMLLES-------------GYTPVFAGIKNDGNID------ELALEKLIN----ERTKAIVSVDY---AGKSVE-  136 (375)
T ss_dssp             CTHHHHHHHHT-------------TCEEEECCBCTTSSBC------GGGSGGGCC----TTEEEEEEECG---GGCCCC-
T ss_pred             cHhHHHHHHHC-------------CCEEEEeccCCCCCCC------HHHHHhhcC----cCceEEEEeCC---cCCccC-
Confidence            99876544332             2222222111111111      356666554    35666555443   566655 


Q ss_pred             chhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCC--Ccceeeec--ccccCccceEEEEe-C-HHHHHhhcc
Q 011777          271 PGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV--IPDIVTMA--KGIGNGLPLGAVVT-T-PEIANVMAQ  344 (477)
Q Consensus       271 ~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv--~pDivt~s--K~lg~G~pig~v~~-~-~~~~~~~~~  344 (477)
                         +++|.++|++||+++|+||+|+.+ ...    .....+.  ..++.++|  |.++.|  +|++++ + +++++.+..
T Consensus       137 ---l~~i~~l~~~~~~~li~D~a~~~~-~~~----~~~~~~~~~~i~~~s~s~~K~~~~g--~g~~~~~~~~~~~~~~~~  206 (375)
T 2fnu_A          137 ---VESVQKLCKKHSLSFLSDSSHALG-SEY----QNKKVGGFALASVFSFHAIKPITTA--EGGAVVTNDSELHEKMKL  206 (375)
T ss_dssp             ---HHHHHHHHHHHTCEEEEECTTCTT-CEE----TTEETTSSSSEEEEECCTTSSSCCS--SCEEEEESCHHHHHHHHH
T ss_pred             ---HHHHHHHHHHcCCEEEEECccccC-CeE----CCeeccccCCeEEEeCCCCCCcccc--CceEEEeCCHHHHHHHHH
Confidence               899999999999999999999733 211    1111222  23455788  999654  777777 4 677766543


Q ss_pred             ccc----------------ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee------e
Q 011777          345 KIQ----------------FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV------R  402 (477)
Q Consensus       345 ~~~----------------~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v------~  402 (477)
                      ...                +.+++.+++.+++++..++.+  ++..++.+++.+++.+.|+++    +.+...      +
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~  280 (375)
T 2fnu_A          207 FRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKDN----PYFTPLHPLLKDK  280 (375)
T ss_dssp             HTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTC----SSEEESGGGCSSC
T ss_pred             HHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC----CCccccCCCCCCC
Confidence            221                112355677776666554433  456677777777777777653    212111      1


Q ss_pred             ccceeEEEEEeeCCCCCCccHH-HHHHHHHHHHHcCceeeccCC-------C----------------CCEEEEeCCCCC
Q 011777          403 GRGLMVGMELVTDRKEKTPAKA-ETAVLFEKLRELGVLVGKGGL-------H----------------GNVFRIKPPMCF  458 (477)
Q Consensus       403 g~g~~~~i~~~~~~~~~~~~~~-~~~~~~~~l~~~Gv~v~~~~~-------~----------------~~~iRi~p~~~~  458 (477)
                      +.+.++++.+...       .. ....+.+.|.++||.+.....       +                .+++||+++..+
T Consensus       281 ~~~~~~~~~~~~~-------~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~  353 (375)
T 2fnu_A          281 SSNHLYPILMHQK-------FFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANL  353 (375)
T ss_dssp             CCCSCEEEEECGG-------GGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTC
T ss_pred             cceEEEEEEeCcc-------ccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCC
Confidence            2234456666311       01 245788899999999872100       0                168999998889


Q ss_pred             cHHHHHHHHHHHHHHHhh
Q 011777          459 TKDDADFLVDALDYSMSK  476 (477)
Q Consensus       459 t~e~i~~~l~~l~~~l~~  476 (477)
                      |++|+++++++|++++++
T Consensus       354 t~~~i~~~~~~l~~~~~~  371 (375)
T 2fnu_A          354 NLESVQNIAHSVLKTFES  371 (375)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            999999999999998764

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.90  E-value=7.5e-22  Score=198.78  Aligned_cols=310  Identities=14%  Similarity=0.026  Sum_probs=199.1

Q ss_pred             CCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEcc
Q 011777          110 CGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRN  189 (477)
Q Consensus       110 lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~  189 (477)
                      +.+.+++..+++.+. ....+....+.++...+++++|+++++.  +.+++++||++|++.+++.+  ..++++|++.++
T Consensus        32 ~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~l~~~la~~~g~--~~~i~~~sG~~ai~~~~~~~--~~~gd~vl~~~~  106 (389)
T 3acz_A           32 FCFDSTQQGADLFMG-KGEGHIYSRLGNPTVEQFEEMVCSIEGA--AGSAAFGSGMGAISSSTLAF--LQKGDHLIAGDT  106 (389)
T ss_dssp             BCCSSHHHHHHHHTT-CSSCCCBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHTTT--CCTTCEEEEESS
T ss_pred             eecCChHHHHHhhcC-CCCCcccCCCCChHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHH--hCCCCEEEEeCC
Confidence            455665444433222 1223445567788899999999999865  47788899999999999865  235678999999


Q ss_pred             CccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeC
Q 011777          190 AYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVEL  269 (477)
Q Consensus       190 ~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~  269 (477)
                      .||+...........         .|+....++.      . |    .+++++.++    +++++|++|+++|++|.+.+
T Consensus       107 ~y~~~~~~~~~~~~~---------~g~~~~~v~~------~-d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~  162 (389)
T 3acz_A          107 LYGCTVSLFTHWLPR---------FGIEVDLIDT------S-D----VEKVKAAWK----PNTKMVYLESPANPTCKVSD  162 (389)
T ss_dssp             CCHHHHHHHHHHHHH---------TTCEEEEECT------T-C----HHHHHHTCC----TTEEEEEEESSCTTTCCCCC
T ss_pred             CchHHHHHHHHHHHH---------cCCEEEEECC------C-C----HHHHHHhcC----CCCeEEEEECCCCCCCeecC
Confidence            999854432110000         1222222211      1 1    477877775    46899999999999998776


Q ss_pred             CchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccC-ccce-EEEEeCH-HHHHhhcc
Q 011777          270 APGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-GLPL-GAVVTTP-EIANVMAQ  344 (477)
Q Consensus       270 ~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pi-g~v~~~~-~~~~~~~~  344 (477)
                          +++|.++|++||+++|+||+|+++.. + ..+     +..+|++  +++|.+++ |.|+ |++++++ ++++.+..
T Consensus       163 ----l~~i~~~~~~~~~~livD~~~~~~~~-~-~~~-----~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~  231 (389)
T 3acz_A          163 ----IKGIAVVCHERGARLVVDATFTSPCF-L-KPL-----ELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKF  231 (389)
T ss_dssp             ----HHHHHHHHHHHTCEEEEECTTTCTTT-C-CGG-----GTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH
T ss_pred             ----HHHHHHHHHHcCCEEEEECCCccccc-c-Ccc-----ccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHH
Confidence                99999999999999999999985421 2 222     2356777  68899996 6888 9999998 88887765


Q ss_pred             cccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH----hCCCce----------eeeccceeEEE
Q 011777          345 KIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQE----RHDIIG----------DVRGRGLMVGM  410 (477)
Q Consensus       345 ~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~----~~~~~~----------~v~g~g~~~~i  410 (477)
                      .....+.+.+++.+.++++.++.+.  ...++..++.+.+.+.|++...    .++.+.          ..++.|.++.+
T Consensus       232 ~~~~~g~~~~~~~~~~~~~~l~~l~--~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~  309 (389)
T 3acz_A          232 YRKDAGSLMAPMDAFLCARGMKTLP--IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLF  309 (389)
T ss_dssp             HHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEE
T ss_pred             HHHhcCCCCCHHHHHHHHcCccHHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEE
Confidence            4322233467888888888776542  2234444555555555554310    011110          11456788888


Q ss_pred             EEeeCCCCCCccHHHHHHHHHHHHHcCceeecc--C--------------------------CCCCEEEEeCCCCCcHHH
Q 011777          411 ELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG--G--------------------------LHGNVFRIKPPMCFTKDD  462 (477)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~--~--------------------------~~~~~iRi~p~~~~t~e~  462 (477)
                      ++..           ...+.+.+.+.|+++...  |                          ...+.+|+++...    +
T Consensus       310 ~l~~-----------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~----~  374 (389)
T 3acz_A          310 EMKS-----------FEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIE----N  374 (389)
T ss_dssp             EESS-----------HHHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSS----C
T ss_pred             EECC-----------HHHHHHHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccC----C
Confidence            8731           234556666778876552  1                          1147899988876    4


Q ss_pred             HHHHHHHHHHHHhh
Q 011777          463 ADFLVDALDYSMSK  476 (477)
Q Consensus       463 i~~~l~~l~~~l~~  476 (477)
                      ++++++.|++++++
T Consensus       375 ~~~li~~l~~al~~  388 (389)
T 3acz_A          375 VDDIIADLKQALEL  388 (389)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhh
Confidence            55555666665544

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.90  E-value=9.9e-23  Score=204.13  Aligned_cols=324  Identities=12%  Similarity=0.039  Sum_probs=200.5

Q ss_pred             CC-EEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCC-CCCEEEEeCChHHHHHHHH
Q 011777           95 GR-RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPG-NLKVVYFVNSGTEANELAM  172 (477)
Q Consensus        95 G~-~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~-~~~~v~~~~sGseA~~~Al  172 (477)
                      |. .++|+..+.+..   ..++++++++.    .  +.   .+.....++++.++++++. +.+++++++||++|++.++
T Consensus        26 g~~~v~~~~~~~~~~---~~~~~v~~a~~----~--~~---~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~   93 (374)
T 2aeu_A           26 GRDALYDLSGLSGGF---LIDEKDKALLN----T--YI---GSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATI   93 (374)
T ss_dssp             CGGGCEECSSCCCCC---CCCHHHHHHHT----S--TT---HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHH
T ss_pred             CccceeeecccCCCC---CCCHHHHHHHH----H--hc---CchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHH
Confidence            44 456876544321   24788888875    1  11   1123345677777777654 2368999999999999999


Q ss_pred             HHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCe
Q 011777          173 LMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKV  252 (477)
Q Consensus       173 ~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~  252 (477)
                      +.+    ++++|++.+++||++.........          .|...+.+ .        |    .++++++ +    +++
T Consensus        94 ~~~----~gd~Vl~~~~~y~~~~~~~~~~~~----------~g~~~~~v-~--------d----~~~l~~~-~----~~~  141 (374)
T 2aeu_A           94 LAL----KPKKVIHYLPELPGHPSIERSCKI----------VNAKYFES-D--------K----VGEILNK-I----DKD  141 (374)
T ss_dssp             HHH----CCSEEEEECSSSSCCTHHHHHHHH----------TTCEEEEE-S--------C----HHHHHTT-C----CTT
T ss_pred             HhC----CCCEEEEecCCCCccHHHHHHHHH----------cCcEEEEe-C--------C----HHHHHhc-C----CCc
Confidence            955    568899999999986432111100          12222221 0        1    4667665 3    467


Q ss_pred             eE-EEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccCccce
Q 011777          253 AG-FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGNGLPL  329 (477)
Q Consensus       253 a~-vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G~pi  329 (477)
                      ++ |++++.+|++|.   +...+++|.++|++||+++|+||+|..+. .+ ...........+|++  ++||.++ |+++
T Consensus       142 ~~~v~~~~p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~~-~~-~~~~~~~~~~~~di~~~S~sK~l~-g~~~  215 (374)
T 2aeu_A          142 TLVIITGSTMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGARV-RL-LFNQPPALKLGADLVVTSTDKLME-GPRG  215 (374)
T ss_dssp             EEEEEECBCTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHHH-HH-HTTCCCHHHHTCSEEEEETTSSSS-SCSC
T ss_pred             cEEEEEccCCCCCCC---CcccHHHHHHHHHHcCCEEEEECCccccc-cc-ccccCCccccCCcEEEecCccccc-Ccce
Confidence            88 888888888884   55669999999999999999999986442 11 000000111235666  5899986 4799


Q ss_pred             EEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHH----HHHHHHHHHhC----CCceee
Q 011777          330 GAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHL----LGRLRTLQERH----DIIGDV  401 (477)
Q Consensus       330 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l----~~~L~~l~~~~----~~~~~v  401 (477)
                      |++++++++++.+.........+.+++.++++.++++.+..+ ..++..++.+.+    ++.|.+.....    +.....
T Consensus       216 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~  294 (374)
T 2aeu_A          216 GLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLE-RIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYER  294 (374)
T ss_dssp             EEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHH-HHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEE
T ss_pred             EEEEECHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceee
Confidence            999999999988765433233456899999999999876432 233444444444    45555433221    112234


Q ss_pred             eccceeEEEEEeeCCCCCCccHH---HHHHHH-HHHHHcCceeeccCCC---CCEEEEeCCC-CCcHHHHHHHHHHHHHH
Q 011777          402 RGRGLMVGMELVTDRKEKTPAKA---ETAVLF-EKLRELGVLVGKGGLH---GNVFRIKPPM-CFTKDDADFLVDALDYS  473 (477)
Q Consensus       402 ~g~g~~~~i~~~~~~~~~~~~~~---~~~~~~-~~l~~~Gv~v~~~~~~---~~~iRi~p~~-~~t~e~i~~~l~~l~~~  473 (477)
                      ++.|.++++...       +...   ...++. +.+.++||++.++..+   .+++||+++. ...+++++++++.|+++
T Consensus       295 ~~~g~~~~~~~~-------~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~  367 (374)
T 2aeu_A          295 TPTGFVIKRVYK-------DDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVES  367 (374)
T ss_dssp             CSSEEEEEEEES-------SHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHH
T ss_pred             CCceEEEEeecc-------cccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHH
Confidence            566766554311       1110   112244 4555789999887432   3589998764 23344588999999888


Q ss_pred             Hhh
Q 011777          474 MSK  476 (477)
Q Consensus       474 l~~  476 (477)
                      +++
T Consensus       368 l~~  370 (374)
T 2aeu_A          368 IKM  370 (374)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            865

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.90  E-value=7.6e-23  Score=204.63  Aligned_cols=317  Identities=14%  Similarity=0.086  Sum_probs=196.6

Q ss_pred             ccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEE
Q 011777          108 VSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIAL  187 (477)
Q Consensus       108 ~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~  187 (477)
                      .++|+++|.+.+.+.+++.+.......+..+...++++.|+++++.  +.++|++||++|++.+++.+. ..+++.|++.
T Consensus         6 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~i~~~sgt~al~~~l~~l~-~~~gd~Vi~~   82 (373)
T 3frk_A            6 ASFKPMHDEIEYEIKFKFEEIYKRNWFILGDEDKKFEQEFADYCNV--NYCIGCGNGLDALHLILKGYD-IGFGDEVIVP   82 (373)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHTCCSSSHHHHHHHHHHHHHHTS--SEEEEESCHHHHHHHHHHHTT-CCTTCEEEEE
T ss_pred             cCCCcccCCCCHHHHHHHHHHHHCCCccCCchHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHcC-CCCcCEEEEC
Confidence            3456665555555444443321111224567789999999999865  589999999999999998663 2356789999


Q ss_pred             ccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCee
Q 011777          188 RNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAV  267 (477)
Q Consensus       188 ~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~  267 (477)
                      .++|++........+.           .+..++.. +.  .+..|    +++++++++    +++++|+  | +++.|..
T Consensus        83 ~~~~~~~~~~~~~~g~-----------~~~~~~~~-~~--~~~~d----~~~l~~~l~----~~~~~v~--~-~n~~G~~  137 (373)
T 3frk_A           83 SNTFIATALAVSYTGA-----------KPIFVEPD-IR--TYNID----PSLIESAIT----EKTKAII--A-VHLYGQP  137 (373)
T ss_dssp             TTSCTHHHHHHHHHSC-----------EEEEECEE-TT--TTEEC----GGGTGGGCC----TTEEEEE--E-ECCTTCC
T ss_pred             CCCcHHHHHHHHHcCC-----------EEEEEecc-cc--ccCcC----HHHHHHhcC----CCCeEEE--E-ECCCcCc
Confidence            9999986554332221           11111111 00  01101    356666664    3677777  3 3356655


Q ss_pred             eCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec----ccccC-ccceEEEEeC-HHHHHh
Q 011777          268 ELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA----KGIGN-GLPLGAVVTT-PEIANV  341 (477)
Q Consensus       268 ~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s----K~lg~-G~pig~v~~~-~~~~~~  341 (477)
                      .+    +++|.++|++||+++|+||+|+.    | ..+.....+..+|++++|    |.+++ |. .|+++++ +++.+.
T Consensus       138 ~~----l~~i~~l~~~~~~~li~D~a~~~----g-~~~~~~~~~~~~d~~~~S~~~~K~l~~~g~-gg~~~~~~~~~~~~  207 (373)
T 3frk_A          138 AD----MDEIKRIAKKYNLKLIEDAAQAH----G-SLYKGMKVGSLGDAAGFSFYPAKNLGSLGD-GGAVVTNDKDLAEK  207 (373)
T ss_dssp             CC----HHHHHHHHHHHTCEEEEECTTCT----T-CEETTEETTSSSSEEEEECCTTSSSCCSSS-CEEEEESCHHHHHH
T ss_pred             cc----HHHHHHHHHHcCCEEEEECCccc----C-CEECCEeccccccEEEEeCcCCCccCccce-eEEEEeCCHHHHHH
Confidence            55    99999999999999999999972    2 112223445557888877    99987 64 6888876 456655


Q ss_pred             hcccc------------cccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeee-ccceeE
Q 011777          342 MAQKI------------QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR-GRGLMV  408 (477)
Q Consensus       342 ~~~~~------------~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~-g~g~~~  408 (477)
                      +....            .+.++..+++.+++++..++.+  +++.++.+++.+++++.|.++.  ........ ....+.
T Consensus       208 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~  283 (373)
T 3frk_A          208 IKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYL--DKWNEERRKIAQKYIAGINNPN--VIIPVEADYAKHVWY  283 (373)
T ss_dssp             HHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHCCCTT--EECCCCCTTEECCCS
T ss_pred             HHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCc--eEeccCCCCCceeeE
Confidence            54321            1234455777777776666543  4456667777777776665432  11110000 111222


Q ss_pred             EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC---C----------------------CCEEEEeCCCCCcHHHH
Q 011777          409 GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL---H----------------------GNVFRIKPPMCFTKDDA  463 (477)
Q Consensus       409 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~----------------------~~~iRi~p~~~~t~e~i  463 (477)
                      .+.+...         ....+.+.|.++||.+.++..   .                      .+.+|++....+|++||
T Consensus       284 ~~~~~~~---------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di  354 (373)
T 3frk_A          284 TFVIRSE---------KRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEI  354 (373)
T ss_dssp             SEEEEES---------SHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHH
T ss_pred             EEEEEeC---------CHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHH
Confidence            2222111         145788999999999875420   0                      15799999999999999


Q ss_pred             HHHHHHHHHHHh
Q 011777          464 DFLVDALDYSMS  475 (477)
Q Consensus       464 ~~~l~~l~~~l~  475 (477)
                      +++++.|+++..
T Consensus       355 ~~~~~~l~~~~~  366 (373)
T 3frk_A          355 EYVIDKINAWKL  366 (373)
T ss_dssp             HHHHHHHHTCC-
T ss_pred             HHHHHHHHHHhh
Confidence            999999987653

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.89  E-value=5.6e-22  Score=196.83  Aligned_cols=308  Identities=11%  Similarity=-0.005  Sum_probs=200.5

Q ss_pred             CCHHHHHHHHHHHhhccccc-cccC--ChHHHHHHHHHHhhCCC-CCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEc
Q 011777          113 CHPDVLNAIFEQSKLLQHAT-TIYL--HHAIADFAEALASKMPG-NLKVVYFVNSGTEANELAMLMARLSTGNLGMIALR  188 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~-~~~~--~~~~~~l~~~La~~~~~-~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~  188 (477)
                      .+|++.+++.+.+....... ..+.  .+...+++++++++++. +.+++++++||++|++.+++...   +. ++++..
T Consensus        15 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~---~~-~~i~~~   90 (362)
T 3ffr_A           15 LYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV---EK-KSFHCV   90 (362)
T ss_dssp             CCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC---SS-EEEEEE
T ss_pred             CCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc---CC-cEEEEc
Confidence            47899999888876532111 1111  24567889999999865 34689999999999999998653   23 666666


Q ss_pred             cCccCCccc-ccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCee
Q 011777          189 NAYHGGSSG-TIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAV  267 (477)
Q Consensus       189 ~~yhG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~  267 (477)
                      ..+++.... .....+.          .+..++...  ...++      .++++  +    .+++++|+++++++++|.+
T Consensus        91 ~~~~~~~~~~~~~~~g~----------~~~~v~~~~--~~~~d------~~~l~--~----~~~~~~v~~~~~~nptG~~  146 (362)
T 3ffr_A           91 NGSFSKRFYEFAGELGR----------EAYKEEAAF--GKGFY------PADIT--V----PADAEIICLTHNETSSGVS  146 (362)
T ss_dssp             CSHHHHHHHHHHHHTTC----------EEEEEECCT--TCCCC------GGGCC--C----CTTCCEEEEESEETTTTEE
T ss_pred             CcHHHHHHHHHHHHhCC----------CeEEEecCC--CCCCC------HHHHh--c----cCCccEEEEEcCCCCccee
Confidence            666652211 1111110          122222211  11111      24454  2    2467888888888889977


Q ss_pred             eCCchhHHHHHHHHHHh-CcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccCccceEEEEeCHHHHHhhcc
Q 011777          268 ELAPGYLKLVYDIVRKA-GGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGLPLGAVVTTPEIANVMAQ  344 (477)
Q Consensus       268 ~~~~~~l~~l~~l~~~~-gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pig~v~~~~~~~~~~~~  344 (477)
                      .+    +++|.++|++| |+++|+||+|+.+...    .  +...  .|+++  ++|.++++..+|++++++++++.+..
T Consensus       147 ~~----l~~i~~la~~~p~~~li~D~a~~~~~~~----~--~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~  214 (362)
T 3ffr_A          147 MP----VEDINTFRDKNKDALIFVDAVSSLPYPK----F--DWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKA  214 (362)
T ss_dssp             CC----HHHHTTSGGGSTTSEEEEECTTTTTSSC----C--CTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHH
T ss_pred             CC----HHHHHHHHHhCCCCEEEEecccccCCcc----c--ChhH--CcEEEEecccccCCCCceEEEEECHHHHHHhhh
Confidence            76    99999999999 9999999998733211    1  1111  56664  56999954557889999998776654


Q ss_pred             ccc--------------------c-cCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCcee
Q 011777          345 KIQ--------------------F-NTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIGD  400 (477)
Q Consensus       345 ~~~--------------------~-~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~  400 (477)
                      ...                    . ..++.+..++.+..++++.+.+   ++..++.+++.+++.+.|+++    +.+..
T Consensus       215 ~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~  290 (362)
T 3ffr_A          215 LLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESS----KVFSF  290 (362)
T ss_dssp             HHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC----SSEEE
T ss_pred             ccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc----cCcee
Confidence            221                    1 1345677777777788876654   345566666666666666543    22221


Q ss_pred             ee-----ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC--CCCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          401 VR-----GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG--LHGNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       401 v~-----g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      ..     ..+.++++.+..          ...++.+.|.++||.+.++.  ..++++||++....+++++++++++|+++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~  360 (362)
T 3ffr_A          291 GVEDAKLRSMTTIVANTTM----------LPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEK  360 (362)
T ss_dssp             SSSCGGGBCSSEEEEEESS----------CHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             ccCChhhcCCceEEEecCC----------CHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            11     124556666521          25678899999999998752  23579999999999999999999999886


Q ss_pred             H
Q 011777          474 M  474 (477)
Q Consensus       474 l  474 (477)
                      +
T Consensus       361 ~  361 (362)
T 3ffr_A          361 I  361 (362)
T ss_dssp             T
T ss_pred             h
Confidence            5

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.89  E-value=3.7e-22  Score=202.43  Aligned_cols=295  Identities=17%  Similarity=0.134  Sum_probs=194.4

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +....+.++...+|+++|+++.+.  +.+++++||++|++.+++.+.  .+++.||+.+++||+..........      
T Consensus        73 ~~y~r~~~p~~~~l~~~la~~~g~--~~~~~~~sG~~Ai~~al~~l~--~~Gd~Vi~~~~~y~~~~~~~~~~~~------  142 (414)
T 3ndn_A           73 YVYSRYGNPTVSVFEERLRLIEGA--PAAFATASGMAAVFTSLGALL--GAGDRLVAARSLFGSCFVVCSEILP------  142 (414)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHTTC--CTTCEEEEESCCCHHHHHHHHTHHH------
T ss_pred             cCcCCCCChHHHHHHHHHHHHHCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEEcCCccchHHHHHHHHHH------
Confidence            445567889999999999999854  689999999999999998653  3568899999999986433221100      


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                         ..|...+.++..       |    +++++++++    +++++|++|+++|++|.+.+    +++|.++|++||+++|
T Consensus       143 ---~~g~~~~~v~~~-------d----~~~l~~ai~----~~t~~v~le~p~NptG~~~~----l~~i~~la~~~g~~li  200 (414)
T 3ndn_A          143 ---RWGVQTVFVDGD-------D----LSQWERALS----VPTQAVFFETPSNPMQSLVD----IAAVTELAHAAGAKVV  200 (414)
T ss_dssp             ---HTTCEEEEECTT-------C----HHHHHHHTS----SCCSEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEE
T ss_pred             ---HcCcEEEEeCCC-------C----HHHHHHhcC----CCCeEEEEECCCCCCCcccc----HHHHHHHHHHcCCEEE
Confidence               012222222211       1    578888876    46789999999999998766    9999999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCcceeeecccccC-c-cceEEEEeCHHHHH-hhcccccccCCCCcHHHHHHHHHHHH
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGN-G-LPLGAVVTTPEIAN-VMAQKIQFNTFGGNPVCSAGGLAVLR  366 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~-G-~pig~v~~~~~~~~-~~~~~~~~~t~~~~~~~~aaa~a~l~  366 (477)
                      +||+|+. +.    .+....+|....+.+++|.+++ | +++|+++++++.+. .+...........+++.+++++..++
T Consensus       201 vDe~~~~-~~----~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~  275 (414)
T 3ndn_A          201 LDNVFAT-PL----LQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLE  275 (414)
T ss_dssp             EECTTTH-HH----HCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGG
T ss_pred             EECCCcc-cc----cCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            9999972 21    1111234555556678999997 7 89999999988765 44422111122346777666666665


Q ss_pred             hhchhhHHHHHHHHHHHHHHHHHHHHHhCCCcee------------------eeccceeEEEEEeeCCCCCCccHHHHHH
Q 011777          367 VIDKERRQAHCADVGSHLLGRLRTLQERHDIIGD------------------VRGRGLMVGMELVTDRKEKTPAKAETAV  428 (477)
Q Consensus       367 ~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~~~~~~~~~~~~~~~~~  428 (477)
                      .+.  ...++..++.+++.+.|++    ++.+..                  .+|.|.++++++.....   ........
T Consensus       276 ~l~--~r~~~~~~~a~~l~~~L~~----~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~---~~~~~~~~  346 (414)
T 3ndn_A          276 TLA--IRVQHSNASAQRIAEFLNG----HPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED---VAKQRAFE  346 (414)
T ss_dssp             GHH--HHHHHHHHHHHHHHHHHHT----CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG---GHHHHHHH
T ss_pred             HHH--HHHHHHHHHHHHHHHHHhc----CCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc---ccHHHHHH
Confidence            442  2344555566666665543    333222                  25678999999842100   00234567


Q ss_pred             HHHHHHHcCceeeccC-------------------------CCCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          429 LFEKLRELGVLVGKGG-------------------------LHGNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       429 ~~~~l~~~Gv~v~~~~-------------------------~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      +.+.|...++.+..|+                         ...+.||++..+    |+++.+++.|++++
T Consensus       347 ~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~----e~~~dli~dl~~al  413 (414)
T 3ndn_A          347 VLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL----EDTDDLIADIDRAL  413 (414)
T ss_dssp             HHHHCSSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred             HHHhCccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence            7777776665554432                         235789997765    55666677777665

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.89  E-value=1.4e-21  Score=203.12  Aligned_cols=349  Identities=13%  Similarity=0.067  Sum_probs=207.1

Q ss_pred             CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCC----hHHHHHHHHHHhhCCCCC-CEEEEeCChHHH
Q 011777           93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH----HAIADFAEALASKMPGNL-KVVYFVNSGTEA  167 (477)
Q Consensus        93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~----~~~~~l~~~La~~~~~~~-~~v~~~~sGseA  167 (477)
                      ..+..|+|+..+      ++.+|.+++++...+... ........    ....+++++|+++++.+. +.++|++|||||
T Consensus        98 ~~~~~yl~~~~~------~~~~~~v~~~~~~~~~n~-~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a  170 (497)
T 2qma_A           98 TQHPDCIAHLHT------PPLMPAVAAEAMIAALNQ-SMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQS  170 (497)
T ss_dssp             TTSTTBCSSSCC------CCBHHHHHHHHHHHHHCC-CTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHH
T ss_pred             CCCCCeeEeCCC------CCcHHHHHHHHHHHhhcc-cccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHH
Confidence            345678888765      346888988886654321 11111112    234456777999986543 689999999999


Q ss_pred             HHHHHHHHHhc------------cC-----Cc-eEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCC
Q 011777          168 NELAMLMARLS------------TG-----NL-GMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSF  229 (477)
Q Consensus       168 ~~~Al~~ar~~------------~~-----~~-~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (477)
                      |..+++.+|.+            .|     ++ .|++.. ..|..........+..       ...+..++...  ...+
T Consensus       171 ~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~-~~h~s~~~~~~~~g~g-------~~~v~~v~~~~--~~~~  240 (497)
T 2qma_A          171 NQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSK-KSHFTVQKSASWMGLG-------EKAVMTVDANA--DGTM  240 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEET-TSCTHHHHHHHHTTSC-------GGGEEEECBCT--TSSB
T ss_pred             HHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECC-CchHHHHHHHHHcCCC-------cccEEEEecCC--CCcC
Confidence            99999987642            11     23 344444 4444332222221110       00123333221  1111


Q ss_pred             CCCHHHHHHHHHHHHhccC--CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc
Q 011777          230 GSDAARYAQDLQDHIDFGT--SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF  307 (477)
Q Consensus       230 ~~~~~~~~~~le~~i~~~~--~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~  307 (477)
                      +      .++|+++|+...  ...+.+|++...++++|.+.+    +++|.++|++||+++|+|++|+++.... . +..
T Consensus       241 d------~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~-~-~~~  308 (497)
T 2qma_A          241 D------ITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILS-S-HKS  308 (497)
T ss_dssp             C------GGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGS-T-TGG
T ss_pred             C------HHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhC-c-chH
Confidence            2      367777776211  112447777766777787666    9999999999999999999999886655 3 333


Q ss_pred             cccCC-Ccceeee--cccccCccceEEEEeCHH-HHHhhcccc-c---ccCCCCcHHHH----------HHHHHHHHhhc
Q 011777          308 ETQGV-IPDIVTM--AKGIGNGLPLGAVVTTPE-IANVMAQKI-Q---FNTFGGNPVCS----------AGGLAVLRVID  369 (477)
Q Consensus       308 ~~~gv-~pDivt~--sK~lg~G~pig~v~~~~~-~~~~~~~~~-~---~~t~~~~~~~~----------aaa~a~l~~l~  369 (477)
                      ...++ .+|++++  +|.+++++++|+++++++ .++.+.... +   ..+...++...          .+..++++.+.
T Consensus       309 ~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg  388 (497)
T 2qma_A          309 RLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVG  388 (497)
T ss_dssp             GGTTGGGCSEEEEETTTTTCCCSSCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTC
T ss_pred             hhcCcccCCEEEEcchhccCCCcceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhC
Confidence            34466 6788876  799998889999998754 344443210 0   01111222211          12334555554


Q ss_pred             hh---hHHHHHHHHHHHHHHHHHHHHHhCCCcee-eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC
Q 011777          370 KE---RRQAHCADVGSHLLGRLRTLQERHDIIGD-VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL  445 (477)
Q Consensus       370 ~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~  445 (477)
                      .+   ++.++..++.+++.+.|+++    +.+.. ....+.++.+.+....   .........+.+.|.++|+++.+...
T Consensus       389 ~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~~~~v~f~~~~~~---~~~~~l~~~l~~~l~~~G~~~~~~~~  461 (497)
T 2qma_A          389 PKALGDMYDHLLAQTLEVADMIRTN----DQFELLAEPSLSTVLFRATHET---ADLDELNKALRLEALTRGIAVLGETI  461 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTC----TTEEECSCCSSSEEEEEECCSS---SCHHHHHHHHHHHHHHHTSCBCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhC----CCeEEEcCCCceEEEEEEcCCc---cCHHHHHHHHHHHHHhCCCEEEEeeE
Confidence            33   45666677777777777653    22211 1234557777764321   01112235677888999998865322


Q ss_pred             C--CCEEEEeC-CCCCcHHHHHHHHHHHHHHHhhC
Q 011777          446 H--GNVFRIKP-PMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       446 ~--~~~iRi~p-~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      .  .+++||++ +..+|++||++++++|+++++++
T Consensus       462 ~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~  496 (497)
T 2qma_A          462 VDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL  496 (497)
T ss_dssp             ETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             ECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence            1  35899997 88899999999999999988764

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.89  E-value=1.4e-21  Score=198.16  Aligned_cols=333  Identities=13%  Similarity=0.063  Sum_probs=195.4

Q ss_pred             EEeecCCcccccCCCCCHHHHHHHHHHHhhc-c--ccc-cccC-C----hHHHHHHHHHHhhCCCCCCEEEEeCChHHHH
Q 011777           98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL-Q--HAT-TIYL-H----HAIADFAEALASKMPGNLKVVYFVNSGTEAN  168 (477)
Q Consensus        98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~-~--~~~-~~~~-~----~~~~~l~~~La~~~~~~~~~v~~~~sGseA~  168 (477)
                      .+++.++..     +.+|+|++|+.+++... .  +.. ..+. .    +....+++++++.++.+.++| +++||++|+
T Consensus        27 ~i~l~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i-~~~sGt~a~  100 (417)
T 3n0l_A           27 GLEMIASEN-----FTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANV-QPNSGSQAN  100 (417)
T ss_dssp             SEECCTTCC-----CCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEEC-CCSSHHHHH
T ss_pred             CeeeecccC-----CCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcce-EeccHHHHH
Confidence            455554432     35899999999888432 1  111 0111 1    223345568888887654445 456779999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      +.+++.+.  .+++.|++..++|++...........        ..++..++++...  .+..|    +++|+++++.  
T Consensus       101 ~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~--~~~~d----~~~l~~~i~~--  162 (417)
T 3n0l_A          101 QGVYAALI--NPGDKILGMDLSHGGHLTHGAKVSSS--------GKMYESCFYGVEL--DGRID----YEKVREIAKK--  162 (417)
T ss_dssp             HHHHHHHS--CTTCEEEEECC------------------------CCSEEEEECCCT--TSSCC----HHHHHHHHHH--
T ss_pred             HHHHHHhc--CCCCEEEecccccccccchhhhhhhh--------cceeeeEeccCCC--CCCcC----HHHHHHHHHh--
Confidence            99999773  46788999999998753311111000        0122222222211  11112    5788888862  


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCcceeeec--ccccC
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIVTMA--KGIGN  325 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~  325 (477)
                       .++++|++.+.+  .|.+.+    +++|.++|++||++||+||+|+ |+...|.....+.    ..|++++|  |++ +
T Consensus       163 -~~~~~v~~~~~~--~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~----~~di~~~s~sK~l-~  230 (417)
T 3n0l_A          163 -EKPKLIVCGASA--YARVID----FAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP----YAHVVSSTTHKTL-R  230 (417)
T ss_dssp             -HCCSEEEECCSS--CCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT----TCSEEEEESSTTT-C
T ss_pred             -cCCeEEEECCcc--cCccCC----HHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc----cceEEEeeCcccc-C
Confidence             245677765533  365555    9999999999999999999974 4333331111111    24777654  999 5


Q ss_pred             ccceEEEEeC-HHHHHhhcccccc-cCCCCcHHHHHHHHHHHHhhc-h--hhHHHHHHHHHHHHHHHHHHHHHhCCCcee
Q 011777          326 GLPLGAVVTT-PEIANVMAQKIQF-NTFGGNPVCSAGGLAVLRVID-K--ERRQAHCADVGSHLLGRLRTLQERHDIIGD  400 (477)
Q Consensus       326 G~pig~v~~~-~~~~~~~~~~~~~-~t~~~~~~~~aaa~a~l~~l~-~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~  400 (477)
                      |++.|+++++ +++.+.+...... .+.+.++..+++..+++.... +  +++.+++.++.+++.+.|.+.  ...... 
T Consensus       231 g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~-  307 (417)
T 3n0l_A          231 GPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR--KFKLVS-  307 (417)
T ss_dssp             SCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT--TCEEGG-
T ss_pred             CCCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC--Cceecc-
Confidence            6678999998 7888877654332 333445666666666666532 2  356667777777777777662  111111 


Q ss_pred             eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC--------CCCCEEEEeCCCC----CcHHHHHHHHH
Q 011777          401 VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG--------LHGNVFRIKPPMC----FTKDDADFLVD  468 (477)
Q Consensus       401 v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------~~~~~iRi~p~~~----~t~e~i~~~l~  468 (477)
                      ....+.++++.+....       .....+.+.|.++||.+.+..        ...+.+|+.++..    +++++|+++++
T Consensus       308 ~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~  380 (417)
T 3n0l_A          308 DGTDNHLVLMSFLDRE-------FSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSN  380 (417)
T ss_dssp             GSCSSSEEEEECTTSS-------SCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHH
T ss_pred             CCCCceEEEEEcccCC-------CCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHH
Confidence            1123456666653211       123567788889999987542        1236699987643    56899999999


Q ss_pred             HHHHHHhh
Q 011777          469 ALDYSMSK  476 (477)
Q Consensus       469 ~l~~~l~~  476 (477)
                      +|++++++
T Consensus       381 ~l~~~l~~  388 (417)
T 3n0l_A          381 YIADILDD  388 (417)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99998863

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.89  E-value=9.8e-23  Score=205.18  Aligned_cols=309  Identities=19%  Similarity=0.151  Sum_probs=201.0

Q ss_pred             CHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccC
Q 011777          114 HPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG  193 (477)
Q Consensus       114 ~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG  193 (477)
                      ++++.+++.+.+....+.   +..+...++++.|+++++.  +.+++++||++|++.+++.+. ..+++.|++..++|++
T Consensus        35 ~~~~~~a~~~~~~~~~~~---~~~~~~~~l~~~la~~~~~--~~~i~~~~gt~al~~~l~~~~-~~~gd~vl~~~~~~~~  108 (391)
T 3dr4_A           35 DGNERDYVLECMDTTWIS---SVGRFIVEFEKAFADYCGV--KHAIACNNGTTALHLALVAMG-IGPGDEVIVPSLTYIA  108 (391)
T ss_dssp             CSSHHHHHHHHHHHTCCS---SCSHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHT-CCTTCEEEEESSSCTH
T ss_pred             CHHHHHHHHHHHHcCCcc---CCChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCchHH
Confidence            367888888777653221   2467789999999999865  489999999999999999773 2356789999999998


Q ss_pred             CcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchh
Q 011777          194 GSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGY  273 (477)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~  273 (477)
                      ........+.           .+..++... .  .+..|    ++++++.++    +++++|+++   +++|.+.+    
T Consensus       109 ~~~~~~~~g~-----------~~~~~~~~~-~--~~~~d----~~~l~~~~~----~~~~~v~~~---n~tG~~~~----  159 (391)
T 3dr4_A          109 SANSVTYCGA-----------TPVLVDNDP-R--TFNLD----AAKLEALIT----PRTKAIMPV---HLYGQICD----  159 (391)
T ss_dssp             HHHHHHHTTC-----------EEEEECBCT-T--TCSBC----GGGSGGGCC----TTEEEECCB---CGGGCCCC----
T ss_pred             HHHHHHHCCC-----------EEEEEecCc-c--ccCcC----HHHHHHhcC----CCceEEEEE---CCCCChhh----
Confidence            7655433321           111222110 0  11111    356666654    467777743   35565554    


Q ss_pred             HHHHHHHHHHhCcEEEEcCcccC-ccCCCCCCccccccCCCcceeeec----ccccCccceEEEEeC-HHHHHhhcccc-
Q 011777          274 LKLVYDIVRKAGGVCIADEVQTG-FGRTGSHYWGFETQGVIPDIVTMA----KGIGNGLPLGAVVTT-PEIANVMAQKI-  346 (477)
Q Consensus       274 l~~l~~l~~~~gillI~DEv~~g-fgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pig~v~~~-~~~~~~~~~~~-  346 (477)
                      +++|.++|++||+++|+||+|+. ....+      ...+..+|++++|    |++++| +.|+++++ +++.+.+.... 
T Consensus       160 ~~~i~~l~~~~~~~li~D~a~~~g~~~~~------~~~~~~~di~~~S~s~~K~l~~g-~gg~~~~~~~~~~~~~~~~~~  232 (391)
T 3dr4_A          160 MDPILEVARRHNLLVIEDAAEAVGATYRG------KKSGSLGDCATFSFFGNAIITTG-EGGMITTNDDDLAAKMRLLRG  232 (391)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTCTTCEETT------EETTSSSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHHB
T ss_pred             HHHHHHHHHHcCCEEEEECcccccceECC------eeecccCCEEEEECCCCCcCCcC-CeEEEEECCHHHHHHHHHHHh
Confidence            99999999999999999999972 21112      2233345777766    999774 57888776 45665554221 


Q ss_pred             cc-------------cCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCcee-----eeccceeE
Q 011777          347 QF-------------NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGD-----VRGRGLMV  408 (477)
Q Consensus       347 ~~-------------~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-----v~g~g~~~  408 (477)
                      ++             ..+..+++.+++++..++.+  ++..++.+++.+++++.|.++  .......     ....+.++
T Consensus       233 ~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~  308 (391)
T 3dr4_A          233 QGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERV--DEHLAARERVVGWYEQKLARL--GNRVTKPHVALTGRHVFWMY  308 (391)
T ss_dssp             TTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHGGG--TTSEECCCCCTTSCCCCSSE
T ss_pred             cCCCCCCcccccccccccCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC--CccccCcCCCCCCcceeEEE
Confidence            11             12455677777666665533  456777788888888888765  2221111     12223345


Q ss_pred             EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC----------------------CCCEEEEeCCCCCcHHHHHHH
Q 011777          409 GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL----------------------HGNVFRIKPPMCFTKDDADFL  466 (477)
Q Consensus       409 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----------------------~~~~iRi~p~~~~t~e~i~~~  466 (477)
                      ++.+....      .....++.+.|.++||.+.++..                      ..+.+|+.+...+|++||+++
T Consensus       309 ~i~~~~~~------~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~  382 (391)
T 3dr4_A          309 TVRLGEGL------STTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRV  382 (391)
T ss_dssp             EEEECSSC------SSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHH
T ss_pred             EEEECCcc------chhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHH
Confidence            66553210      11246788999999999986520                      135799999999999999999


Q ss_pred             HHHHHHHH
Q 011777          467 VDALDYSM  474 (477)
Q Consensus       467 l~~l~~~l  474 (477)
                      +++|++++
T Consensus       383 ~~~l~~~l  390 (391)
T 3dr4_A          383 IAALDQVL  390 (391)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHHHh
Confidence            99998765

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.89  E-value=3.1e-22  Score=202.21  Aligned_cols=339  Identities=14%  Similarity=0.076  Sum_probs=202.3

Q ss_pred             EEEeecCCcccccCC--CCCHHHHHHHHHHH-hh-c--cccccccCChHHHHHHHHHHhhCCC--CCC--EEEEeCChHH
Q 011777           97 RYLDAFAGIVTVSCG--HCHPDVLNAIFEQS-KL-L--QHATTIYLHHAIADFAEALASKMPG--NLK--VVYFVNSGTE  166 (477)
Q Consensus        97 ~ylD~~~g~~~~~lG--h~~p~v~~Av~~~l-~~-~--~~~~~~~~~~~~~~l~~~La~~~~~--~~~--~v~~~~sGse  166 (477)
                      ..|||..|.....-|  ...+.|.+|.. .+ +. .  .|....+..+.++.+++++.+....  ..+  .+++|+||++
T Consensus        30 ~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~  108 (405)
T 3k7y_A           30 EKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTG  108 (405)
T ss_dssp             SCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHH
T ss_pred             CcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHH
Confidence            457887775322223  24677888766 33 22 1  2222334445566666666544321  223  4699999999


Q ss_pred             HHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777          167 ANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF  246 (477)
Q Consensus       167 A~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~  246 (477)
                      |+..++++.....+ +.|++.+++|.++.......+             ...+.+|......++-|    ++++++.++.
T Consensus       109 al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~d----~~~l~~~l~~  170 (405)
T 3k7y_A          109 AIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRG-------------FNLKYINFFDYNLIDIN----YDLFLNDLRN  170 (405)
T ss_dssp             HHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTT-------------CEEEEECCEETTTTEEC----HHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcC-------------CeEEEEeccccccCCcC----HHHHHHHHHh
Confidence            99999987655446 999999999998765544332             22333322111112212    4778887763


Q ss_pred             cCCCCeeEEEecc-cCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCC--Cccccc-cCCCcc---eeee
Q 011777          247 GTSGKVAGFIAET-IQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH--YWGFET-QGVIPD---IVTM  319 (477)
Q Consensus       247 ~~~~~~a~vi~ep-i~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~--~~~~~~-~gv~pD---ivt~  319 (477)
                      .  .+.+++++.| .||++| ..++++.+++|.++|++||+++|+||+|.+|...+..  ...... ......   +-+|
T Consensus       171 ~--~~~~~i~l~~~~~NPTG-~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~  247 (405)
T 3k7y_A          171 I--PNGSSVILQISCYNPCS-VNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSF  247 (405)
T ss_dssp             S--CSSCEEEECCSSCTTTC-CCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEEC
T ss_pred             C--CCCeEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeC
Confidence            2  2445677765 478888 5678999999999999999999999999998754311  111111 111222   3479


Q ss_pred             ccccc-CccceEEEEe---CHHHHHhhcc----cccccCCCCcHHHHHHHHHHHHhhc-hhh-------HHHHHHHHHHH
Q 011777          320 AKGIG-NGLPLGAVVT---TPEIANVMAQ----KIQFNTFGGNPVCSAGGLAVLRVID-KER-------RQAHCADVGSH  383 (477)
Q Consensus       320 sK~lg-~G~pig~v~~---~~~~~~~~~~----~~~~~t~~~~~~~~aaa~a~l~~l~-~~~-------~~~~~~~~~~~  383 (477)
                      ||.++ .|+|+||+++   ++++++.+..    .......+.+.+++.++.++|+.-. .+.       +.++++++++.
T Consensus       248 SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~  327 (405)
T 3k7y_A          248 SKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRIL  327 (405)
T ss_dssp             TTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999 6999999864   5666654432    1112223456788888777776311 011       22334444555


Q ss_pred             HHHHHHHHHHhCCC---ceeeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCc
Q 011777          384 LLGRLRTLQERHDI---IGDVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFT  459 (477)
Q Consensus       384 l~~~L~~l~~~~~~---~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t  459 (477)
                      +.+.|++..++++.   +....+. |+|+|+.+.        .     ++++.|.++||++.|++      ||+.. ..+
T Consensus       328 l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~--------~-----~~~~~L~~~gV~v~p~~------Ris~a-~~~  387 (405)
T 3k7y_A          328 FFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLL--------A-----KIAEHLKTHHIYIINNG------RINVS-GIT  387 (405)
T ss_dssp             HHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGG--------G-----GGTTTTTTTTEECCTTS------EEEGG-GCC
T ss_pred             HHHHHHhhhhhcCCCCCCccccCCceEEEecCCC--------H-----HHHHHHHHCCEeecCCC------eEEEe-ccC
Confidence            55554410003332   2223334 555565331        1     22345578899999863      88643 357


Q ss_pred             HHHHHHHHHHHHHHHhhC
Q 011777          460 KDDADFLVDALDYSMSKL  477 (477)
Q Consensus       460 ~e~i~~~l~~l~~~l~~l  477 (477)
                      +++|++++++|.++++++
T Consensus       388 ~~~i~~~~~~i~~~~~~~  405 (405)
T 3k7y_A          388 KNNVDYIADKICLSLSQI  405 (405)
T ss_dssp             TTHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHhhC
Confidence            899999999999998753

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.89  E-value=1.1e-21  Score=192.99  Aligned_cols=282  Identities=15%  Similarity=-0.011  Sum_probs=188.5

Q ss_pred             HHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecC
Q 011777          142 DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVN  221 (477)
Q Consensus       142 ~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (477)
                      +++++|+++++.+  ..++++||++|++.+++...  .++++|++..++||+...........         .|.....+
T Consensus         2 ~l~~~la~~~g~~--~~i~~~sG~~a~~~~~~~~~--~~g~~v~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~   68 (331)
T 1pff_A            2 ALEGKIAKLEHAE--ACAATASGMGAIAASVWTFL--KAGDHLISDDCLYGCTHALFEHQLRK---------FGVEVDFI   68 (331)
T ss_dssp             HHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC--CTTCEEEEESCCCHHHHHHHHTHHHH---------TTCEEEEE
T ss_pred             hHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc--CCCCEEEEcCCCcchHHHHHHHHHHh---------cCCEEEEe
Confidence            5778888888653  66778888999999998653  35678999999999865443221000         02222211


Q ss_pred             CCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHH-hCcEEEEcCcccCccCC
Q 011777          222 PDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK-AGGVCIADEVQTGFGRT  300 (477)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~-~gillI~DEv~~gfgr~  300 (477)
                      +.     .  |    .+++++.++    +++++|++++++|++|.+.+    +++|.++|++ ||+++|+||+|+.+. .
T Consensus        69 ~~-----~--d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~~~~-~  128 (331)
T 1pff_A           69 DM-----A--V----PGNIEKHLK----PNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASPI-L  128 (331)
T ss_dssp             CT-----T--S----TTHHHHTCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHHH-H
T ss_pred             CC-----C--C----HHHHHHhhc----CCCeEEEEECCCCCcCcccC----HHHHHHHHhhhcCCEEEEECCCcccc-c
Confidence            11     0  1    367777765    46889999999999998776    9999999999 999999999997332 1


Q ss_pred             CCCCccccccCCCcceeeecccccC-ccc-eEEEEeCH-HHHHhhcccccc-cCCCCcHHHHHHHHHHHHhhchhhHHHH
Q 011777          301 GSHYWGFETQGVIPDIVTMAKGIGN-GLP-LGAVVTTP-EIANVMAQKIQF-NTFGGNPVCSAGGLAVLRVIDKERRQAH  376 (477)
Q Consensus       301 G~~~~~~~~~gv~pDivt~sK~lg~-G~p-ig~v~~~~-~~~~~~~~~~~~-~t~~~~~~~~aaa~a~l~~l~~~~~~~~  376 (477)
                      . .  .. .++....+.+++|.+++ |.| +|++++++ ++++.+...... .+.+.+++++.++.++++.+..  ..++
T Consensus       129 ~-~--~~-~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~  202 (331)
T 1pff_A          129 T-N--PL-DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDM--RVKR  202 (331)
T ss_dssp             C-C--GG-GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHH
T ss_pred             C-C--hh-hcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHHH--HHHH
Confidence            1 1  11 23444444578999996 688 79999998 898888776655 5667888888887777764421  2233


Q ss_pred             HHHHHHHHHHHHHHHHH---h-CCCce----------eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeec
Q 011777          377 CADVGSHLLGRLRTLQE---R-HDIIG----------DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGK  442 (477)
Q Consensus       377 ~~~~~~~l~~~L~~l~~---~-~~~~~----------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~  442 (477)
                      ..++.+.+.+.+++...   . ++.+.          ..++.|.++.+.+.           ....+.+.|.++||++..
T Consensus       203 ~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gI~~~~  271 (331)
T 1pff_A          203 AAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD-----------GLEKAKKVLDNCHVVSLA  271 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS-----------SHHHHHHHHHTCSSSEEC
T ss_pred             HHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-----------CHHHHHHHHHhCCCceec
Confidence            33344444444433210   0 01111          11346778887763           134577788889997643


Q ss_pred             cC----------------------------CCCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          443 GG----------------------------LHGNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       443 ~~----------------------------~~~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      ..                            ...+++|++++...++++++.+++.|+++
T Consensus       272 ~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~  330 (331)
T 1pff_A          272 VSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             SSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred             cCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence            21                            12479999999999999999999998764

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.89  E-value=2.5e-21  Score=194.59  Aligned_cols=312  Identities=13%  Similarity=0.072  Sum_probs=200.8

Q ss_pred             CHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccC
Q 011777          114 HPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG  193 (477)
Q Consensus       114 ~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG  193 (477)
                      .|++++++.++++...+  ..+..+...++++.|+++++..  ..++++||++|++.+++.+. ..++++|++..++||+
T Consensus        16 ~~~~~~a~~~~l~~~~~--~~~~~~~~~~l~~~la~~~~~~--~~i~~~sGt~al~~~l~~l~-~~~gd~Vi~~~~~~~~   90 (388)
T 1b9h_A           16 DDAERNGLVRALEQGQW--WRMGGDEVNSFEREFAAHHGAA--HALAVTNGTHALELALQVMG-VGPGTEVIVPAFTFIS   90 (388)
T ss_dssp             CHHHHHHHHHHHHTSCC--BTTTCSHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCTH
T ss_pred             CHHHHHHHHHHHHcCCe--eecCCHHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCccHH
Confidence            48999999999876321  2334567889999999999653  45566678999999998763 2356789999999998


Q ss_pred             CcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchh
Q 011777          194 GSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGY  273 (477)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~  273 (477)
                      ........             |...+.++.... .+..|    +++|+++++    +++++|+  |++. +|.+.+    
T Consensus        91 ~~~~~~~~-------------g~~~~~v~~~~~-~~~~d----~~~l~~~i~----~~~~~v~--~~n~-tG~~~~----  141 (388)
T 1b9h_A           91 SSQAAQRL-------------GAVTVPVDVDAA-TYNLD----PEAVAAAVT----PRTKVIM--PVHM-AGLMAD----  141 (388)
T ss_dssp             HHHHHHHT-------------TCEEEEECBCTT-TCCBC----HHHHHHHCC----TTEEEEC--CBCG-GGCCCC----
T ss_pred             HHHHHHHc-------------CCEEEEEecCCC-cCCCC----HHHHHHhcC----cCceEEE--EeCC-ccCcCC----
Confidence            76544222             222222221110 11112    478888775    3577766  5544 565655    


Q ss_pred             HHHHHHHHHHhCcEEEEcCcccC-ccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCHH-H--HHhhcccc-
Q 011777          274 LKLVYDIVRKAGGVCIADEVQTG-FGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPE-I--ANVMAQKI-  346 (477)
Q Consensus       274 l~~l~~l~~~~gillI~DEv~~g-fgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~-~--~~~~~~~~-  346 (477)
                      +++|.++|++||++||+||+|+. +...| ..  +..++ ..++.+||  |++++| ++|+++++++ +  ++.+.... 
T Consensus       142 l~~i~~la~~~~~~li~D~a~~~g~~~~~-~~--~~~~~-~i~~~S~s~~K~l~g~-~~G~~~~~~~~~~~~~~~~~~~~  216 (388)
T 1b9h_A          142 MDALAKISADTGVPLLQDAAHAHGARWQG-KR--VGELD-SIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLRHS  216 (388)
T ss_dssp             HHHHHHHHHHHTCCBCEECTTCTTCEETT-EE--GGGSS-SCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHHTB
T ss_pred             HHHHHHHHHHcCCEEEEecchhcCCccCC-ee--ccccc-ceEEEEccCCCcccCC-CeEEEEECCHHHHHHHHHHHHHh
Confidence            89999999999999999999983 33333 11  22223 24455666  667654 7899999876 6  55543211 


Q ss_pred             c--------------ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee-------eccc
Q 011777          347 Q--------------FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV-------RGRG  405 (477)
Q Consensus       347 ~--------------~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-------~g~g  405 (477)
                      +              +.++..+++.++++.+.++.++  +..++.+++.+++.+.|+++    +.+...       +..+
T Consensus       217 ~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~--~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~  290 (388)
T 1b9h_A          217 CGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLD--EQIAVRDERWTLLSRLLGAI----DGVVPQGGDVRADRNSH  290 (388)
T ss_dssp             TTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTS----TTCEECCCCTTCCBCCC
T ss_pred             CCCCccCccceeecccccCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC----CCccccCCCcCCCccce
Confidence            0              1223356777666666665442  35566667777777776653    222111       2235


Q ss_pred             eeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC-------------------------------CCEEEEeC
Q 011777          406 LMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH-------------------------------GNVFRIKP  454 (477)
Q Consensus       406 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-------------------------------~~~iRi~p  454 (477)
                      .++++.+..      .......++.+.|.++||.+.++...                               .+.+||..
T Consensus       291 ~~~~~~~~~------~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~  364 (388)
T 1b9h_A          291 YMAMFRIPG------LTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHH  364 (388)
T ss_dssp             SEEEEECTT------CCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEG
T ss_pred             EEEEEEeCC------cCcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecC
Confidence            677777621      01124567889999999999764210                               13589988


Q ss_pred             CCCC-cHHHHHHHHHHHHHHHhh
Q 011777          455 PMCF-TKDDADFLVDALDYSMSK  476 (477)
Q Consensus       455 ~~~~-t~e~i~~~l~~l~~~l~~  476 (477)
                      ...+ |++||+++++.|++++++
T Consensus       365 ~~~~~t~edi~~~~~~l~~~~~~  387 (388)
T 1b9h_A          365 RVLLAGEPELHATAEIIADAVAR  387 (388)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhh
Confidence            8788 999999999999998865

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.89  E-value=2.9e-21  Score=196.72  Aligned_cols=317  Identities=13%  Similarity=0.069  Sum_probs=197.8

Q ss_pred             eecCCcccccCCCCCHHHHHHHHHHHhhccccccccC--ChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHh
Q 011777          100 DAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL--HHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARL  177 (477)
Q Consensus       100 D~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~--~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~  177 (477)
                      ||..+..  .++ .++++.+++.+.++...     |.  .+...++++.|+++++.  +++++++||++|++.+++.+. 
T Consensus        20 ~l~~~~p--~~~-~p~~~~~a~~~~~~~~~-----y~~~~~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~l~~l~-   88 (424)
T 2po3_A           20 PLLVGRP--NRI-DRARLYERLDRALDSQW-----LSNGGPLVREFEERVAGLAGV--RHAVATCNATAGLQLLAHAAG-   88 (424)
T ss_dssp             CEETTCC--CCC-CHHHHHHHHHHHHHHTC-----CSSSCHHHHHHHHHHHHHHTS--SEEEEESCHHHHHHHHHHHHT-
T ss_pred             cccccCC--CCC-ChHHHHHHHHHHHhcCC-----cccCCHHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHcC-
Confidence            3444433  344 35799999998886532     33  36788999999999854  689999999999999999764 


Q ss_pred             ccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEe
Q 011777          178 STGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIA  257 (477)
Q Consensus       178 ~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~  257 (477)
                        .++.|++.+++|++........             |...+.++... ..+..|    +++|++.++    +++++|++
T Consensus        89 --~gd~Vlv~~~~~~~~~~~~~~~-------------G~~~~~v~~~~-~~~~~d----~~~l~~~i~----~~~~~v~~  144 (424)
T 2po3_A           89 --LTGEVIMPSMTFAATPHALRWI-------------GLTPVFADIDP-DTGNLD----PDQVAAAVT----PRTSAVVG  144 (424)
T ss_dssp             --CCSEEEEESSSCTHHHHHHHHT-------------TCEEEEECBCT-TTSSBC----HHHHGGGCC----TTEEEEEE
T ss_pred             --CCCEEEECCCccHHHHHHHHHc-------------CCEEEEEecCC-CcCCcC----HHHHHHhhC----cCCcEEEE
Confidence              3488999999999876543222             22222221110 011111    467776664    36777776


Q ss_pred             cccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCcceee--ec--ccccCccceEEE
Q 011777          258 ETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIVT--MA--KGIGNGLPLGAV  332 (477)
Q Consensus       258 epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDivt--~s--K~lg~G~pig~v  332 (477)
                      .+   ++|...    .+++|.++|++||+++|+||+|+ |+.+.| ..     .+..+|+++  ||  |++++ +++|++
T Consensus       145 ~~---~tG~~~----~l~~i~~la~~~~~~li~Dea~~~g~~~~~-~~-----~~~~~di~~~S~sk~K~l~~-~~~G~~  210 (424)
T 2po3_A          145 VH---LWGRPC----AADQLRKVADEHGLRLYFDAAHALGCAVDG-RP-----AGSLGDAEVFSFHATKAVNA-FEGGAV  210 (424)
T ss_dssp             EC---GGGCCC----CHHHHHHHHHHTTCEEEEECTTCTTCEETT-EE-----TTSSSSEEEEECCTTSSSCC-SSCEEE
T ss_pred             EC---CCCCcC----CHHHHHHHHHHcCCEEEEECccccCCeECC-ee-----cccccCEEEEeCCCCCCccC-CCCeEE
Confidence            43   355443    49999999999999999999999 676555 22     122246665  44  77766 799999


Q ss_pred             EeC-HHHHHhhcccccc------------cCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCce
Q 011777          333 VTT-PEIANVMAQKIQF------------NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIG  399 (477)
Q Consensus       333 ~~~-~~~~~~~~~~~~~------------~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~  399 (477)
                      +++ +++++.+......            .++..+++.+++++..++.+  ++..++.+++.+++.+.|.+    .+.+.
T Consensus       211 v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~--~~~~~~~~~~~~~l~~~L~~----~~g~~  284 (424)
T 2po3_A          211 VTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAF--PEVIDRNRRNHAAYREHLAD----LPGVL  284 (424)
T ss_dssp             EESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTCS----CTTEE
T ss_pred             EeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcc----CCCcc
Confidence            999 8887766532111            11233566666666554432  23455555555555555443    22222


Q ss_pred             eee-ccc-----eeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-C----------------------CCEE
Q 011777          400 DVR-GRG-----LMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-H----------------------GNVF  450 (477)
Q Consensus       400 ~v~-g~g-----~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~----------------------~~~i  450 (477)
                      ... ..|     .++.+.+.....     .....++.+.|.++||.+.+... .                      .+.|
T Consensus       285 ~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l  359 (424)
T 2po3_A          285 VADHDRHGLNNHQYVIVEIDEATT-----GIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVL  359 (424)
T ss_dssp             ECCGGGGSCCCCCCEEEEECHHHH-----SSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEE
T ss_pred             ccCCCCCCccccEEEEEEECCccc-----hhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEE
Confidence            211 111     344455521000     00145678889999999876311 0                      0127


Q ss_pred             EEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          451 RIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       451 Ri~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      |+.+...++++|+++++++|++++++
T Consensus       360 ~l~~~~~~t~e~i~~~~~~L~~~~~~  385 (424)
T 2po3_A          360 SLPTGTAIGDDDIRRVADLLRLCATR  385 (424)
T ss_dssp             EECCSTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            77666889999999999999988753

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.88  E-value=7.9e-22  Score=202.66  Aligned_cols=311  Identities=14%  Similarity=0.115  Sum_probs=196.7

Q ss_pred             CCHHHHHHHHHH----HhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEc
Q 011777          113 CHPDVLNAIFEQ----SKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALR  188 (477)
Q Consensus       113 ~~p~v~~Av~~~----l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~  188 (477)
                      .+|.|.++....    .+...+.+..+.++...+++++++++++.  +.+++++||++|+..+++   ...+++.||+.+
T Consensus       104 ~~~~i~~a~~~~~~~~~~~~~~~Y~~~g~~~~~~l~~~la~~~g~--~~~i~~~sGt~al~~~l~---~~~~Gd~Vi~~~  178 (464)
T 1ibj_A          104 MSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKA--DRAFCFTSGMAALSAVTH---LIKNGEEIVAGD  178 (464)
T ss_dssp             SSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHT---TSCTTCEEEEES
T ss_pred             CCccHHhhhhhhhhcccccCCccccCCCCHHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHH---HhCCCCEEEEEC
Confidence            455666665432    11112222244567889999999999864  578899999999998876   234668899999


Q ss_pred             cCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeee
Q 011777          189 NAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVE  268 (477)
Q Consensus       189 ~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~  268 (477)
                      +.||+..........         ..|...+.++..       |    .++++++++    +++++|++++++|++|.+.
T Consensus       179 ~~y~~~~~~~~~~~~---------~~G~~v~~v~~~-------d----~~~l~~~i~----~~tk~v~l~~p~NptG~v~  234 (464)
T 1ibj_A          179 DVYGGSDRLLSQVVP---------RSGVVVKRVNTT-------K----LDEVAAAIG----PQTKLVWLESPTNPRQQIS  234 (464)
T ss_dssp             SCCHHHHHHHHHTSG---------GGTCEEEEECTT-------S----HHHHHHHCC----SSEEEEEECSSCTTTCCCC
T ss_pred             CCchhHHHHHHHHHH---------HcCCEEEEeCCC-------C----HHHHHHHhc----cCceEEEEeCCCCCCCEee
Confidence            999886432100000         012222222211       1    578888775    4789999999999999777


Q ss_pred             CCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCc-cccccCCCccee--eecccccC--ccceEEEEeC-HHHHHhh
Q 011777          269 LAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW-GFETQGVIPDIV--TMAKGIGN--GLPLGAVVTT-PEIANVM  342 (477)
Q Consensus       269 ~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~-~~~~~gv~pDiv--t~sK~lg~--G~pig~v~~~-~~~~~~~  342 (477)
                      +    +++|.++|++||+++|+||+|..    | ..+ ..+ ++  .|++  +++|.+++  |+++|+++++ +++++.+
T Consensus       235 ~----l~~i~~la~~~gi~livDea~~~----g-~~~~~~~-~~--~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l  302 (464)
T 1ibj_A          235 D----IRKISEMAHAQGALVLVDNSIMS----P-VLSRPLE-LG--ADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEV  302 (464)
T ss_dssp             C----HHHHHHHHHTTTCEEEEECTTTC----T-TTCCGGG-TT--CSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHH
T ss_pred             c----HHHHHHHHHHcCCEEEEECCCcc----c-ccCChhh-cC--CEEEEECCcccccCCCCCcEEEEEEChHHHHHHH
Confidence            5    99999999999999999999973    2 111 222 33  5666  68899986  7899999998 4787777


Q ss_pred             cccccccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHH------HHHHHhCCCce----eeeccceeEEE
Q 011777          343 AQKIQFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRL------RTLQERHDIIG----DVRGRGLMVGM  410 (477)
Q Consensus       343 ~~~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L------~~l~~~~~~~~----~v~g~g~~~~i  410 (477)
                      ........++.+++.+.++.++++.+..  +...+++....+++.+.-      .+...+++.+.    ..++.|.++++
T Consensus       303 ~~~~~~~g~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~  382 (464)
T 1ibj_A          303 YFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSF  382 (464)
T ss_dssp             HHHHHHTTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEE
T ss_pred             HHHHHhcCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEE
Confidence            6433223345578888888888764321  122223333333222110      00001111111    12345778888


Q ss_pred             EEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-------------------------CCCCEEEEeCCCCCcHHHHHH
Q 011777          411 ELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-------------------------LHGNVFRIKPPMCFTKDDADF  465 (477)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------------------------~~~~~iRi~p~~~~t~e~i~~  465 (477)
                      ++.        .......+.+.|+..||.+..|.                         ...+++||++++    ||+++
T Consensus       383 ~l~--------~~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~  450 (464)
T 1ibj_A          383 ITG--------SVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDD  450 (464)
T ss_dssp             ECS--------CHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHH
T ss_pred             EEC--------CHHHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHH
Confidence            862        11223457777776787776553                         114689998886    89999


Q ss_pred             HHHHHHHHHhh
Q 011777          466 LVDALDYSMSK  476 (477)
Q Consensus       466 ~l~~l~~~l~~  476 (477)
                      +++.|++++++
T Consensus       451 li~~L~~al~~  461 (464)
T 1ibj_A          451 LISDLDIAFKT  461 (464)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHhh
Confidence            99999999875

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.88  E-value=2.3e-21  Score=195.74  Aligned_cols=290  Identities=17%  Similarity=0.088  Sum_probs=188.4

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCccccccc-ccCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGL-TALNTWK  208 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~-~~~~~~~  208 (477)
                      +..+.+.++...+|+++|+++.+.  +.+++++||++|+++++++   ..+++.||+.++.|||........ ...    
T Consensus        59 ~~y~r~~~p~~~~l~~~la~l~g~--~~~~~~~sG~~Ai~~~~~l---~~~gd~Vi~~~~~y~~~~~~~~~~~~~~----  129 (400)
T 3nmy_A           59 FEYSRTHNPTRFAYERCVAALEGG--TRAFAFASGMAATSTVMEL---LDAGSHVVAMDDLYGGTFRLFERVRRRT----  129 (400)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHTT---SCTTCEEEEESSCCHHHHHHHHHTHHHH----
T ss_pred             cccccCCCHHHHHHHHHHHHHhCC--CCEEEecCHHHHHHHHHHH---cCCCCEEEEeCCCchHHHHHHHHhhHhh----
Confidence            445567789999999999999865  4788999999999985442   235678999999998765433221 000    


Q ss_pred             CCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEE
Q 011777          209 YPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVC  288 (477)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill  288 (477)
                           .|+....++.      + |    .++++++++    +++++|++|+++|++|.+.+    +++|.++|++||+++
T Consensus       130 -----~g~~~~~v~~------~-d----~~~l~~~i~----~~~~~v~~e~~~np~G~~~~----l~~i~~la~~~g~~l  185 (400)
T 3nmy_A          130 -----AGLDFSFVDL------T-D----PAAFKAAIR----ADTKMVWIETPTNPMLKLVD----IAAIAVIARKHGLLT  185 (400)
T ss_dssp             -----HCCEEEEECT------T-S----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEE
T ss_pred             -----cCeEEEEECC------C-C----HHHHHHHhc----cCCCEEEEECCCCCCCeeec----HHHHHHHHHHcCCEE
Confidence                 0222222111      1 1    578888875    47899999999999998776    999999999999999


Q ss_pred             EEcCcccCccCCCCCCccccccCCCcceeeecccccC-ccceEE--EEe-CHHHHHhhcccccccCCCCcHHHHHHHHHH
Q 011777          289 IADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGN-GLPLGA--VVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAV  364 (477)
Q Consensus       289 I~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~-G~pig~--v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~  364 (477)
                      |+||+|+.. ... ..   ..+|..+.+.+++|.++| |.++|+  ++. ++++.+.+....+..+...+|+.+++++..
T Consensus       186 ivDe~~~~~-~~~-~~---~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~  260 (400)
T 3nmy_A          186 VVDNTFASP-MLQ-RP---LSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRG  260 (400)
T ss_dssp             EEECTTTHH-HHC-CG---GGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHH
T ss_pred             EEECCCccc-ccC-Ch---hhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence            999999732 111 11   223555556679999996 567655  443 677887776555555667788888888887


Q ss_pred             HHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee------------------eccceeEEEEEeeCCCCCCccHHHH
Q 011777          365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV------------------RGRGLMVGMELVTDRKEKTPAKAET  426 (477)
Q Consensus       365 l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v------------------~g~g~~~~i~~~~~~~~~~~~~~~~  426 (477)
                      ++.+.  ...++..++.+++.+.|+    +++.+..+                  +|.|.|+++++..       .....
T Consensus       261 l~~l~--~r~~~~~~~a~~l~~~L~----~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~-------~~~~~  327 (400)
T 3nmy_A          261 LKTLP--LRMRAHCENALALAQWLE----THPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKG-------GFDAA  327 (400)
T ss_dssp             HTTHH--HHHHHHHHHHHHHHHHHT----TCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT-------HHHHH
T ss_pred             HhHHH--HHHHHHHHHHHHHHHHHH----cCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCC-------cHHHH
Confidence            76543  234445555555555543    34555544                  7789999999842       11234


Q ss_pred             HHHHHHHHHcCceeecc-------------------------CCCCCEEEEeCCCCCcHHHHHHHHHHH
Q 011777          427 AVLFEKLRELGVLVGKG-------------------------GLHGNVFRIKPPMCFTKDDADFLVDAL  470 (477)
Q Consensus       427 ~~~~~~l~~~Gv~v~~~-------------------------~~~~~~iRi~p~~~~t~e~i~~~l~~l  470 (477)
                      ..+.+.|.-.++.+..|                         +...+.+|++..+...++.++.+.++|
T Consensus       328 ~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~~dli~dl~~al  396 (400)
T 3nmy_A          328 KRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGDLRGDLERAL  396 (400)
T ss_dssp             HHHHHHCSSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred             HHHHHcCCcceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHH
Confidence            45555554333222222                         123478999887765555444433333

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.88  E-value=8.7e-21  Score=191.27  Aligned_cols=319  Identities=16%  Similarity=0.091  Sum_probs=201.9

Q ss_pred             CHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccC
Q 011777          114 HPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG  193 (477)
Q Consensus       114 ~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG  193 (477)
                      +|++.+++.+.++.. +...  ..+...++++.|+++++.  +++++++||++|++.+++.+. ..+++.|++..++|++
T Consensus        11 ~~~v~~a~~~~~~~~-~~~~--~g~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~~~~l~-~~~gd~Vl~~~~~~~~   84 (394)
T 1o69_A           11 GGNELKYIEEVFKSN-YIAP--LGEFVNRFEQSVKDYSKS--ENALALNSATAALHLALRVAG-VKQDDIVLASSFTFIA   84 (394)
T ss_dssp             -CCHHHHHHHHHHHT-TTSC--TTHHHHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCGG
T ss_pred             CHHHHHHHHHHHHcC-CccC--CChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcC-CCCCCEEEECCCccHH
Confidence            467888888887652 1111  125578999999999854  789999999999999999763 2356789999999998


Q ss_pred             CcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchh
Q 011777          194 GSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGY  273 (477)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~  273 (477)
                      ........             |...+.++...  .+..|    ++++++.++.. ++++++|++++.   .|..    ..
T Consensus        85 ~~~~~~~~-------------g~~~~~v~~~~--~~~~d----~~~l~~~i~~~-~~~~~~v~~~~~---~G~~----~~  137 (394)
T 1o69_A           85 SVAPICYL-------------KAKPVFIDCDE--TYNID----VDLLKLAIKEC-EKKPKALILTHL---YGNA----AK  137 (394)
T ss_dssp             GTHHHHHT-------------TCEEEEECBCT--TSSBC----HHHHHHHHHHC-SSCCCEEEEECG---GGCC----CC
T ss_pred             HHHHHHHc-------------CCEEEEEEeCC--CCCcC----HHHHHHHHhcc-cCCceEEEEECC---CCCh----hh
Confidence            86554432             12222222111  11112    57888888632 125778888763   4433    34


Q ss_pred             HHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCcceeee--cccccCccceEEEEeC-HHHHHhhccccccc
Q 011777          274 LKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIVTM--AKGIGNGLPLGAVVTT-PEIANVMAQKIQFN  349 (477)
Q Consensus       274 l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~pig~v~~~-~~~~~~~~~~~~~~  349 (477)
                      +++|.++|++||+++|+||+|+ |+.+.| ...+  .++ .+|+.+|  +|.++ |.++|+++++ +++++.+......+
T Consensus       138 l~~i~~l~~~~~~~li~Dea~~~g~~~~~-~~~~--~~~-~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~  212 (394)
T 1o69_A          138 MDEIVEICKENDIVLIEDAAEALGSFYKN-KALG--TFG-EFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQA  212 (394)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTCTTCEETT-EETT--SSS-SEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTC
T ss_pred             HHHHHHHHHHcCCEEEEECcCcccceeCC-cccc--ccc-CcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhc
Confidence            9999999999999999999998 665544 2110  111 3688888  47665 4589999995 78877665321111


Q ss_pred             --------------CCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeec-cce--eEEEEE
Q 011777          350 --------------TFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRG-RGL--MVGMEL  412 (477)
Q Consensus       350 --------------t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g-~g~--~~~i~~  412 (477)
                                    +++.+++.++++++.++.+  ++..++.+++.+++.+.|.++ -+.  ...... .+.  ++.+.+
T Consensus       213 ~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l--~~~~~~~~~~~~~l~~~L~~~-~~~--~~~~~~~~~~~~~~~i~~  287 (394)
T 1o69_A          213 RENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVL--EQRVLKKREIYEWYKEFLGEY-FSF--LDELENSRSNRWLSTALI  287 (394)
T ss_dssp             CCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTT-EEC--CCCCTTEECCCSSEEEEE
T ss_pred             cccCccccccccCcccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccc-ccc--cCCCCCCcceeEEEEEEe
Confidence                          1124567777776666654  336678888888888888765 121  111110 122  345555


Q ss_pred             eeCCC-----------CC--CccHHHHHHHHHHHHHcCceeeccCC-------CC---------------CEEEEeCCCC
Q 011777          413 VTDRK-----------EK--TPAKAETAVLFEKLRELGVLVGKGGL-------HG---------------NVFRIKPPMC  457 (477)
Q Consensus       413 ~~~~~-----------~~--~~~~~~~~~~~~~l~~~Gv~v~~~~~-------~~---------------~~iRi~p~~~  457 (477)
                      ..+..           ..  .........+.+.|.++||.+.++..       ..               ..+++.....
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (394)
T 1o69_A          288 NFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTA  367 (394)
T ss_dssp             SCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTT
T ss_pred             cchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCC
Confidence            31100           00  00012456788999999999987621       00               2355555667


Q ss_pred             CcHHHHHHHHHHHHHHHh
Q 011777          458 FTKDDADFLVDALDYSMS  475 (477)
Q Consensus       458 ~t~e~i~~~l~~l~~~l~  475 (477)
                      +|++|+++++++|+++++
T Consensus       368 ~t~edi~~~~~~l~~~~~  385 (394)
T 1o69_A          368 MSKDDVYEISKLILKSIK  385 (394)
T ss_dssp             CCHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            899999999999998875

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.87  E-value=2.1e-20  Score=189.91  Aligned_cols=317  Identities=17%  Similarity=0.066  Sum_probs=196.3

Q ss_pred             CCHHHHHHHHHHHhhcccc---ccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEcc
Q 011777          113 CHPDVLNAIFEQSKLLQHA---TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRN  189 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~---~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~  189 (477)
                      -+|++.+++.++++.....   ...+..+...+++++|+++++.  +.+++++||++|++.+++.++. .+++.|++..+
T Consensus        14 ~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~--~~~i~~~~gt~al~~~~~~~~~-~~gd~Vl~~~~   90 (418)
T 2c81_A           14 HSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGV--PYCVPTTSGSTALMLALEALGI-GEGDEVIVPSL   90 (418)
T ss_dssp             CCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHTTC-CTTCEEEEESS
T ss_pred             CCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcCC-CCcCEEEECCC
Confidence            3689999999999874322   1122345588999999999865  3688899999999999987632 35678999999


Q ss_pred             CccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeC
Q 011777          190 AYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVEL  269 (477)
Q Consensus       190 ~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~  269 (477)
                      +|++........             |...+.++... ..+..|    .+++++.++    +++++|++++   +.|...+
T Consensus        91 ~~~~~~~~~~~~-------------g~~~~~~~~~~-~~~~~d----~~~l~~~i~----~~~~~v~~~~---~~G~~~~  145 (418)
T 2c81_A           91 TWIATATAVLNV-------------NALPVFVDVEA-DTYCID----PQLIKSAIT----DKTKAIIPVH---LFGSMAN  145 (418)
T ss_dssp             SCTHHHHHHHHT-------------TCEEEEECBCT-TTCSBC----HHHHGGGCC----TTEEEECCBC---CTTCCCC
T ss_pred             ccHhHHHHHHHc-------------CCEEEEEecCC-CCCCcC----HHHHHHhhC----CCCeEEEEeC---CcCCccc
Confidence            999886544322             22222221110 011112    467777665    3678887654   4554443


Q ss_pred             CchhHHHHHHHHHHhCcEEEEcCcccCcc-CCCCCCccccccCCCcceeee--cccccCccceEEEEeC-HHHHHhhccc
Q 011777          270 APGYLKLVYDIVRKAGGVCIADEVQTGFG-RTGSHYWGFETQGVIPDIVTM--AKGIGNGLPLGAVVTT-PEIANVMAQK  345 (477)
Q Consensus       270 ~~~~l~~l~~l~~~~gillI~DEv~~gfg-r~G~~~~~~~~~gv~pDivt~--sK~lg~G~pig~v~~~-~~~~~~~~~~  345 (477)
                          +++|.++|++||+++|+||+|+.+. ..+ ..+  ..++ ..++.+|  +|.+++| ++|+++++ +++++.+...
T Consensus       146 ----~~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~--~~~~-~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~~~  216 (418)
T 2c81_A          146 ----MDEINEIAQEHNLFVIEDCAQSHGSVWNN-QRA--GTIG-DIGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQQL  216 (418)
T ss_dssp             ----HHHHHHHHHHTTCEEEEECTTCTTCEETT-EET--TSSS-SEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHCCCEEEEECcccccCccCC-Eec--cccc-ceEEEeccCCcccCCC-CeEEEEECCHHHHHHHHHH
Confidence                9999999999999999999999764 333 111  1111 2344566  8999987 99999995 7777665432


Q ss_pred             cccc------------CCC--------------CcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCce
Q 011777          346 IQFN------------TFG--------------GNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIG  399 (477)
Q Consensus       346 ~~~~------------t~~--------------~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~  399 (477)
                      ...+            .|.              .+++..+.+...++.+  ++..++.+++.+++.+.|.+    .+.+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~----~~g~~  290 (418)
T 2c81_A          217 RADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQEL--DDKNAIREKNAMFLNDALSK----IDGIK  290 (418)
T ss_dssp             HBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTT----STTEE
T ss_pred             HHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcc----CCCcc
Confidence            1110            011              2344333333334322  34556666666666666644    32222


Q ss_pred             ee-eccc----e--eEEEEEeeCCCCCCccHHHHHHHHHHHHHc-Cce---eeccCC-----------------------
Q 011777          400 DV-RGRG----L--MVGMELVTDRKEKTPAKAETAVLFEKLREL-GVL---VGKGGL-----------------------  445 (477)
Q Consensus       400 ~v-~g~g----~--~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~---v~~~~~-----------------------  445 (477)
                      .. ...+    .  ++.+.+.....    ......++.+.|.++ ||.   +.++..                       
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~  366 (418)
T 2c81_A          291 VMKRPPQVSRQTYYGYVFRFDPVKF----GGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKT  366 (418)
T ss_dssp             ECCCCTTEEECCCSEEEEEECGGGT----TTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCC
T ss_pred             cCCCCCCCcccccEEEEEEEccccc----cccCHHHHHHHHHHcCCCCcccccccccccccCchhccccccccccccccc
Confidence            11 1222    2  22344421000    001245788899999 999   765410                       


Q ss_pred             --------C-------CCEEEEeCCCCC-cHHHHHHHHHHHHHHHhh
Q 011777          446 --------H-------GNVFRIKPPMCF-TKDDADFLVDALDYSMSK  476 (477)
Q Consensus       446 --------~-------~~~iRi~p~~~~-t~e~i~~~l~~l~~~l~~  476 (477)
                              .       .+.|||+++..+ |++||++++++|++++++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~  413 (418)
T 2c81_A          367 EAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARK  413 (418)
T ss_dssp             HHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHT
T ss_pred             ccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHh
Confidence                    0       148999999999 999999999999998865

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.87  E-value=9.8e-21  Score=192.61  Aligned_cols=290  Identities=15%  Similarity=0.127  Sum_probs=188.7

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +....+.++...+++++|+++++.  +..++++||++|++.+++.+  ..+++.||+..+.||+...........     
T Consensus        50 ~~y~~~~~~~~~~l~~~la~~~g~--~~~v~~~sGt~A~~~~l~~~--~~~gd~vi~~~~~~~~~~~~~~~~~~~-----  120 (421)
T 2ctz_A           50 NIYSRIMNPTVDVLEKRLAALEGG--KAALATASGHAAQFLALTTL--AQAGDNIVSTPNLYGGTFNQFKVTLKR-----  120 (421)
T ss_dssp             GSCBTTBCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHH--CCTTCEEEECSCCCHHHHHHHHTHHHH-----
T ss_pred             CcccCCCChHHHHHHHHHHHHhCC--CceEEecCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHHHHH-----
Confidence            334455677889999999999865  35678888999999999976  346788999999999876544221100     


Q ss_pred             CCCCCCeeeecC-CCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEE
Q 011777          210 PIPQGEIHHVVN-PDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVC  288 (477)
Q Consensus       210 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill  288 (477)
                          .|+....+ +.      + |    .++++++++    +++++|++++++|++|.+.+    +++|.++|++||+++
T Consensus       121 ----~g~~~~~~~~~------~-d----~~~l~~~i~----~~~~~v~~~~~~n~~G~~~~----l~~i~~~a~~~g~~l  177 (421)
T 2ctz_A          121 ----LGIEVRFTSRE------E-R----PEEFLALTD----EKTRAWWVESIGNPALNIPD----LEALAQAAREKGVAL  177 (421)
T ss_dssp             ----TTCEEEECCTT------C-C----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEE
T ss_pred             ----cCCEEEEECCC------C-C----HHHHHHhhc----cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEE
Confidence                12232222 11      1 1    578888876    47899999999999998777    999999999999999


Q ss_pred             EEcCcccCccCCCCCCccccccCCCccee--eecccccC-ccceEEEEeC---HHH----HHhhccc---cc--------
Q 011777          289 IADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-GLPLGAVVTT---PEI----ANVMAQK---IQ--------  347 (477)
Q Consensus       289 I~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pig~v~~~---~~~----~~~~~~~---~~--------  347 (477)
                      |+||+|+++|+.+ ..+     +..+|++  +++|.+++ |.++|++++.   +++    .+.+...   .+        
T Consensus       178 ivD~~~~~~g~~~-~~~-----~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~  251 (421)
T 2ctz_A          178 IVDNTFGMGGYLL-RPL-----AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAF  251 (421)
T ss_dssp             EEECGGGGGGTSC-CGG-----GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHH
T ss_pred             EEECCcccccccC-Ccc-----ccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhc
Confidence            9999996677655 332     2347887  78899997 7899888774   122    1122110   00        


Q ss_pred             ---------------ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee-----------
Q 011777          348 ---------------FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV-----------  401 (477)
Q Consensus       348 ---------------~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-----------  401 (477)
                                     ......+++.+++++..++.+.  ...++..++.+++.+.|.+    ++.+..+           
T Consensus       252 ~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~----~p~v~~v~~p~~~~~~~~  325 (421)
T 2ctz_A          252 GELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLS--LRAERHVENTLHLAHWLLE----QPQVAWVNYPGLPHHPHH  325 (421)
T ss_dssp             GGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHT----CTTEEEEECTTSTTCTTH
T ss_pred             chhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHH--HHHHHHHHhHHHHHHHHHh----CCCeeEEECCCCCCCCCH
Confidence                           0112557888777777776542  2234444566666665554    3333322           


Q ss_pred             --------eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeecc-------------------------CCCCC
Q 011777          402 --------RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG-------------------------GLHGN  448 (477)
Q Consensus       402 --------~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-------------------------~~~~~  448 (477)
                              ++.|.++.+++...       ......+.+.+...++.+..|                         +...+
T Consensus       326 ~~~~~~~~~~~g~ivsf~l~~~-------~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~  398 (421)
T 2ctz_A          326 DRAQKYFKGKPGAVLTFGLKGG-------YEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPE  398 (421)
T ss_dssp             HHHHHHHTTCCCSEEEEEETTH-------HHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTT
T ss_pred             HHHHHhccCCCceEEEEEeCCC-------HHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCC
Confidence                    46788999988421       123344555554334333222                         11247


Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          449 VFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       449 ~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      .+|+++.+    +|++++++.|++++
T Consensus       399 ~vRlS~g~----e~~~~li~~l~~al  420 (421)
T 2ctz_A          399 MVRLSVGL----EHVEDLKAELKEAL  420 (421)
T ss_dssp             EEEEECCS----SCHHHHHHHHHHHT
T ss_pred             eEEEEeCC----CCHHHHHHHHHHHh
Confidence            89998664    57888888888775

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.87  E-value=2.8e-20  Score=187.53  Aligned_cols=295  Identities=15%  Similarity=0.085  Sum_probs=189.1

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      |....+.++...+++++|+++++.+  .+++++||+||++.+++ .  ..++++||+..+.||+..........      
T Consensus        47 ~~~~~~~~~~~~~lr~~la~~~g~~--~~i~~~sGt~a~~~al~-~--~~~gd~Vi~~~~~y~~~~~~~~~~~~------  115 (393)
T 1n8p_A           47 YEYSRSQNPNRENLERAVAALENAQ--YGLAFSSGSATTATILQ-S--LPQGSHAVSIGDVYGGTHRYFTKVAN------  115 (393)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHH-T--SCSSCEEEEESSCCHHHHHHHHHTST------
T ss_pred             cceecCCChhHHHHHHHHHHHhCCC--cEEEECChHHHHHHHHH-H--cCCCCEEEEeCCCchHHHHHHHHHHH------
Confidence            3344566778889999999998653  67788889999999998 3  23567899999999875332100000      


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHh----C
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKA----G  285 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~----g  285 (477)
                         ..|+....++.        +   . ++++++++    +++++|++++++|++|.+.+    +++|.++|++|    |
T Consensus       116 ---~~G~~v~~v~~--------~---d-~~l~~~i~----~~t~lv~~~~~~nptG~~~~----l~~i~~la~~~~~~~~  172 (393)
T 1n8p_A          116 ---AHGVETSFTND--------L---L-NDLPQLIK----ENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQD  172 (393)
T ss_dssp             ---TTCSCCEEESS--------H---H-HHHHHHSC----SSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTT
T ss_pred             ---HcCcEEEEeCC--------C---h-HHHHHhcc----cCceEEEEECCCCCcceecC----HHHHHHHHHHhCCCCC
Confidence               01222111111        1   1 45666664    46899999999999998876    99999999999    9


Q ss_pred             cEEEEcCcccCccCCCCCCccccccCCCccee--eecccccC-ccce-EEEEeC-HHHHHhhcccccccCCCCcHHHHHH
Q 011777          286 GVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-GLPL-GAVVTT-PEIANVMAQKIQFNTFGGNPVCSAG  360 (477)
Q Consensus       286 illI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pi-g~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aa  360 (477)
                      +++|+||+|+++.+.  .++.   ++  +|++  +++|.+++ |+|+ |+++++ +++++.+...........++..+++
T Consensus       173 ~~livD~a~~~~~~~--~~~~---~~--~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~  245 (393)
T 1n8p_A          173 VILVVDNTFLSPYIS--NPLN---FG--ADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWL  245 (393)
T ss_dssp             CEEEEECTTTHHHHC--CGGG---GT--CSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_pred             CEEEEeCCccccccC--CHHH---cC--CeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            999999999976542  2321   23  5666  68899996 7999 999885 7888877643222223346777777


Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH---h--CCCce----------eeec-c-ceeEEEEEeeCCCCCCccH
Q 011777          361 GLAVLRVIDKERRQAHCADVGSHLLGRLRTLQE---R--HDIIG----------DVRG-R-GLMVGMELVTDRKEKTPAK  423 (477)
Q Consensus       361 a~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~---~--~~~~~----------~v~g-~-g~~~~i~~~~~~~~~~~~~  423 (477)
                      +.++++.+.  ...++..++.+.+.+.|.+...   +  ++.+.          ..++ . |.++++.+..       ..
T Consensus       246 ~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~-------~~  316 (393)
T 1n8p_A          246 THRGLKTLH--LRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKG-------GA  316 (393)
T ss_dssp             HHHHHTTHH--HHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESS-------CH
T ss_pred             HHhccchHH--HHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCC-------cH
Confidence            777776432  2234444455555555543210   0  11110          0133 5 7788888832       12


Q ss_pred             HHHHHHHHHHHHcCceeecc-------------------------CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          424 AETAVLFEKLRELGVLVGKG-------------------------GLHGNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       424 ~~~~~~~~~l~~~Gv~v~~~-------------------------~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      .....+...+...++.+..|                         +...+.+||++....++++|+.+.++|+++.
T Consensus       317 ~~~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~~  392 (393)
T 1n8p_A          317 EAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQAT  392 (393)
T ss_dssp             HHHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence            23455555554334332211                         1114789999999999999999999998753

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.86  E-value=3e-20  Score=189.53  Aligned_cols=292  Identities=14%  Similarity=0.102  Sum_probs=190.1

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      |....+.++...+++++|+++++.  +..++++||++|++.+++....  ++++||+.++.|++..........      
T Consensus       106 ~~y~r~~~~~~~~l~~~lA~l~g~--~~~v~~~sG~~Ai~~al~~l~~--~Gd~Vi~~~~~y~~~~~~~~~~~~------  175 (445)
T 1qgn_A          106 FEYGRYGNPTTVVLEEKISALEGA--ESTLLMASGMCASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETILP------  175 (445)
T ss_dssp             CCBGGGCCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHHSC--SSCEEEEETTSCHHHHHHHHHTGG------
T ss_pred             ccccCCCChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHHhC--CCCEEEEcCCCchhHHHHHHHHHH------
Confidence            444556788899999999999865  3667788899999999985532  457899999999875332110000      


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCe-eEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKV-AGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVC  288 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~-a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill  288 (477)
                         ..|+....++.      + |    +++++++++    +++ ++|++|+++|++|.+.+    +++|.++|++||+++
T Consensus       176 ---~~G~~v~~v~~------~-d----~~~l~~ai~----~~tv~lV~le~p~NptG~v~d----l~~I~~la~~~g~~l  233 (445)
T 1qgn_A          176 ---KMGITATVIDP------A-D----VGALELALN----QKKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALV  233 (445)
T ss_dssp             ---GGTCEEEEECS------S-C----HHHHHHHHH----HSCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEE
T ss_pred             ---HcCCEEEEeCC------C-C----HHHHHHHhc----cCCCCEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEE
Confidence               01222222221      1 1    578888887    245 89999999999998776    999999999999999


Q ss_pred             EEcCcccCccCCCCCCccccccCCCcceee--ecccccC-c-cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHH
Q 011777          289 IADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGN-G-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAV  364 (477)
Q Consensus       289 I~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~  364 (477)
                      |+||+|+.+ ...      ...+..+|+++  ++|.+++ | +++|++++++++++.+...........+++.+..++..
T Consensus       234 ivD~a~~~~-~~~------~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~  306 (445)
T 1qgn_A          234 CIDGTFATP-LNQ------KALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRG  306 (445)
T ss_dssp             EEECTTTCT-TTC------CTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred             EEECCCccc-ccC------CccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence            999999732 111      22334578775  7899986 4 57999999999888775432211222467776666666


Q ss_pred             HHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCce------------------eeeccceeEEEEEeeCCCCCCccHHHH
Q 011777          365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIG------------------DVRGRGLMVGMELVTDRKEKTPAKAET  426 (477)
Q Consensus       365 l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~------------------~v~g~g~~~~i~~~~~~~~~~~~~~~~  426 (477)
                      ++.+.  ...++..++.+++.+.|.+.    +.+.                  ..++.|.++++++..       .....
T Consensus       307 l~~l~--~r~~~~~~~a~~l~~~L~~~----p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~-------~~~~~  373 (445)
T 1qgn_A          307 MKTLH--LRVQQQNSTALRMAEILEAH----PKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDG-------DLLTT  373 (445)
T ss_dssp             GGGHH--HHHHHHHHHHHHHHHHHHTC----TTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESS-------CHHHH
T ss_pred             HHHHH--HHHHHHHHHHHHHHHHHhcC----CCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECC-------CHHHH
Confidence            65442  22344444555666665543    3221                  113578889998842       11234


Q ss_pred             HHHHHHHHHcCceeecc-------------------------CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          427 AVLFEKLRELGVLVGKG-------------------------GLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       427 ~~~~~~l~~~Gv~v~~~-------------------------~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      ..+.+.|...++.+..|                         +...+.|||+..    .||++.+++.|+++++++
T Consensus       374 ~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~~~  445 (445)
T 1qgn_A          374 AKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALDSI  445 (445)
T ss_dssp             HHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHhhC
Confidence            55666554334433222                         122478999765    468999999999998754

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.86  E-value=2.1e-20  Score=188.99  Aligned_cols=291  Identities=14%  Similarity=0.031  Sum_probs=189.8

Q ss_pred             cccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCC
Q 011777          133 TIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP  212 (477)
Q Consensus       133 ~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~  212 (477)
                      ..+.++...+|+++|+++++..  ..++++||++|+..+++ .  ..++++|++.++.||+..........         
T Consensus        62 ~r~~~p~~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~-l--~~~gd~Vl~~~~~y~~~~~~~~~~~~---------  127 (403)
T 3cog_A           62 SRSGNPTRNCLEKAVAALDGAK--YCLAFASGLAATVTITH-L--LKAGDQIICMDDVYGGTNRYFRQVAS---------  127 (403)
T ss_dssp             ----CHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHT-T--SCTTCEEEEESSCCHHHHHHHHHTGG---------
T ss_pred             cCCCCchHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHH-H--hCCCCEEEEeCCCcchHHHHHHHHHH---------
Confidence            3567788899999999998653  56667788999999988 3  34567899999999985332111100         


Q ss_pred             CCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhC-cEEEEc
Q 011777          213 QGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAG-GVCIAD  291 (477)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g-illI~D  291 (477)
                      ..|+....++..       |    .+++++.++    +++++|++++++|++|.+.+    +++|.++|++|| +++|+|
T Consensus       128 ~~G~~v~~v~~~-------d----~~~l~~~i~----~~t~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~~livD  188 (403)
T 3cog_A          128 EFGLKISFVDCS-------K----IKLLEAAIT----PETKLVWIETPTNPTQKVID----IEGCAHIVHKHGDIILVVD  188 (403)
T ss_dssp             GGTCEEEEECTT-------S----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHTSSSCCEEEEE
T ss_pred             HcCCEEEEECCC-------C----HHHHHHhcC----cCCeEEEEECCCCCCCeeeC----HHHHHHHHHHcCCCEEEEE
Confidence            012222222211       1    477888775    47889999999999998776    999999999999 999999


Q ss_pred             CcccCccCCCCCCccccccCCCccee--eecccccC-c-cceEEEEeC-HHHHHhhcccccccCCCCcHHHHHHHHHHHH
Q 011777          292 EVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-G-LPLGAVVTT-PEIANVMAQKIQFNTFGGNPVCSAGGLAVLR  366 (477)
Q Consensus       292 Ev~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~  366 (477)
                      |+|+++.. + ..+     +..+|++  +++|.+++ | .++|+++++ +++++.+.......+...+++.+.+++..++
T Consensus       189 ~~~~~~~~-~-~~~-----~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~  261 (403)
T 3cog_A          189 NTFMSPYF-Q-RPL-----ALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLK  261 (403)
T ss_dssp             CTTTCTTT-C-CTT-----TTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred             CCCccccc-C-Ccc-----ccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh
Confidence            99986532 2 121     2346766  68899995 4 689999995 7888877654444455678898888888876


Q ss_pred             hhchhhHHHHHHHHHHHHHHHHHHH----------HHhCCCce----eeeccceeEEEEEeeCCCCCCccHHHHHHHHHH
Q 011777          367 VIDKERRQAHCADVGSHLLGRLRTL----------QERHDIIG----DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEK  432 (477)
Q Consensus       367 ~l~~~~~~~~~~~~~~~l~~~L~~l----------~~~~~~~~----~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~  432 (477)
                      .+.  ...++..++...+.+.|++.          ...++...    ..++.|.++.+.+...          .....+.
T Consensus       262 ~l~--~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~----------~~~~~~~  329 (403)
T 3cog_A          262 TLH--VRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT----------LQHAEIF  329 (403)
T ss_dssp             THH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC----------HHHHHHH
T ss_pred             HHH--HHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC----------HHHHHHH
Confidence            542  22333344444444444332          11111111    1234588888876311          1234555


Q ss_pred             HHHcCceeec---c-------------------------CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          433 LRELGVLVGK---G-------------------------GLHGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       433 l~~~Gv~v~~---~-------------------------~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      +.+.|+++..   |                         +...+.+||++.+..++++|+.+.+.|+++++
T Consensus       330 l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~~  400 (403)
T 3cog_A          330 LKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAHP  400 (403)
T ss_dssp             HHHCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHCC
T ss_pred             HHhCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhhc
Confidence            6677875432   1                         11247899999999999999998888887654

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.86  E-value=1.2e-19  Score=182.59  Aligned_cols=305  Identities=13%  Similarity=0.107  Sum_probs=196.9

Q ss_pred             CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHH-----hccCCceEEEE
Q 011777          113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR-----LSTGNLGMIAL  187 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar-----~~~~~~~ii~~  187 (477)
                      -+|++.+++.++++...+    +..+...++++.++++++.  +.++|++||++|++.+++.++     ...++++|++.
T Consensus        13 ~~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~--~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~   86 (390)
T 3b8x_A           13 WDDLEYKAIQSVLDSKMF----TMGEYVKQYETQFAKTFGS--KYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVP   86 (390)
T ss_dssp             CCHHHHHHHHHHHHHTCC----SSCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEE
T ss_pred             CCHHHHHHHHHHHHcCCC----CCChHHHHHHHHHHHHHCC--CcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEEC
Confidence            378999999999876432    3467788999999999865  478999999999999998763     13456789999


Q ss_pred             ccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCee
Q 011777          188 RNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAV  267 (477)
Q Consensus       188 ~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~  267 (477)
                      .++||+........+             ...+.++.... .+..|    +++++++++    +++++|++.+.   .|..
T Consensus        87 ~~~~~~~~~~~~~~g-------------~~~~~~~~~~~-~~~~d----~~~l~~~i~----~~~~~v~~~~~---~g~~  141 (390)
T 3b8x_A           87 AVSWSTTYYPLQQYG-------------LRVKFVDIDIN-TLNID----IESLKEAVT----DSTKAILTVNL---LGNP  141 (390)
T ss_dssp             SSSCHHHHHHHHHTT-------------CEEEEECBCTT-TCSBC----HHHHHHHCC----TTEEEEEEECG---GGCC
T ss_pred             CCCcHHHHHHHHHcC-------------CEEEEEecCcc-ccCcC----HHHHHHHhC----cCCeEEEEECC---ccCh
Confidence            999998766543321             11111111100 01112    578888775    35777777532   2333


Q ss_pred             eCCchhHHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCcceeeecccccCcc---ceEEEEeCH-HHHHhh
Q 011777          268 ELAPGYLKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIVTMAKGIGNGL---PLGAVVTTP-EIANVM  342 (477)
Q Consensus       268 ~~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~---pig~v~~~~-~~~~~~  342 (477)
                          ..+++|.++|++||+++|+||+|+ |...      ....+|..+|+.++||..+.++   ..|++++++ ++.+.+
T Consensus       142 ----~~~~~i~~l~~~~~~~li~D~a~~~g~~~------~~~~~g~~~~~~~~s~~~~k~~~~g~gG~~~~~~~~l~~~~  211 (390)
T 3b8x_A          142 ----NNFDEINKIIGGRDIILLEDNCESMGATF------NNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDDEEIYHIL  211 (390)
T ss_dssp             ----CCHHHHHHHHTTSCCEEEEECTTCTTCEE------TTEETTSSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHH
T ss_pred             ----hhHHHHHHHHHHcCCEEEEECcCcccCEE------CCcccccccceEEEEccCCCCCccCCceEEEeCCHHHHHHH
Confidence                339999999999999999999998 3222      2245677789988876544211   338888875 665543


Q ss_pred             cccc-c------------------------------ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHH
Q 011777          343 AQKI-Q------------------------------FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTL  391 (477)
Q Consensus       343 ~~~~-~------------------------------~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l  391 (477)
                      .... +                              +.++..+++.++++++.++.+  ++..++.+++.+++.+.|+++
T Consensus       212 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l--~~~~~~~~~~~~~l~~~L~~~  289 (390)
T 3b8x_A          212 LCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKL--PRFISVRRKNAEYFLDKFKDH  289 (390)
T ss_dssp             HHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCC
Confidence            2211 0                              122336788888888877655  346667777777777776543


Q ss_pred             HHhCCCceeee--cccee--EEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeecc---CC--C----C-----------
Q 011777          392 QERHDIIGDVR--GRGLM--VGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG---GL--H----G-----------  447 (477)
Q Consensus       392 ~~~~~~~~~v~--g~g~~--~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~---~~--~----~-----------  447 (477)
                          +.+....  ..+.+  +.+.+..+      .......+.+.|.++||.+.+.   ..  .    .           
T Consensus       290 ----~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (390)
T 3b8x_A          290 ----PYLDVQQETGESSWFGFSFIIKKD------SGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVD  359 (390)
T ss_dssp             ----SSEEECCCCSBCCCCEEEEEECTT------SCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCH
T ss_pred             ----CCcccCCCCCCcccEEEEEEecCc------CcccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCCh
Confidence                2221111  12222  34444210      0012457888899999988752   10  1    0           


Q ss_pred             -------CEEEEeCCCCCcHHHHHHHHHHH
Q 011777          448 -------NVFRIKPPMCFTKDDADFLVDAL  470 (477)
Q Consensus       448 -------~~iRi~p~~~~t~e~i~~~l~~l  470 (477)
                             +.+||.....+|++||+++++.|
T Consensus       360 ~~~~~~~~~l~l~~~~~~t~~di~~i~~~l  389 (390)
T 3b8x_A          360 NAEYLDKNGLFVGNHQIELFDEIDYLREVL  389 (390)
T ss_dssp             HHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred             HHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence                   25999999999999999999876

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.86  E-value=1.4e-20  Score=186.91  Aligned_cols=309  Identities=9%  Similarity=0.002  Sum_probs=188.7

Q ss_pred             CCHHHHHHHHHHHhhcc------ccc---cccCChHHHHHHHHHHhhCCCC-CCEEEEeCCh-HHHHHHHHHHHHhccCC
Q 011777          113 CHPDVLNAIFEQSKLLQ------HAT---TIYLHHAIADFAEALASKMPGN-LKVVYFVNSG-TEANELAMLMARLSTGN  181 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~------~~~---~~~~~~~~~~l~~~La~~~~~~-~~~v~~~~sG-seA~~~Al~~ar~~~~~  181 (477)
                      .+|+|++++.+.++...      +..   .....+...+++++++++++.. .++|+|++|+ ++|+++++.......++
T Consensus        14 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~~~   93 (360)
T 1w23_A           14 LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTI   93 (360)
T ss_dssp             CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCE
T ss_pred             CCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCCCc
Confidence            68999999998875420      101   0011234678999999998764 3589999988 99999988755332112


Q ss_pred             c-eEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCc-CCCCCCCHHHHHHHHHH-HHhccCCCCeeEEEec
Q 011777          182 L-GMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPY-HGSFGSDAARYAQDLQD-HIDFGTSGKVAGFIAE  258 (477)
Q Consensus       182 ~-~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~le~-~i~~~~~~~~a~vi~e  258 (477)
                      . .|+....+|+. ...+ ..            .| ..+.++... ....+      .+++++ .++    +++++|+++
T Consensus        94 g~~vi~~~~~~~~-~~~~-~~------------~g-~~~~v~~~~~~~~~d------~~~l~~~~i~----~~~k~v~~~  148 (360)
T 1w23_A           94 GNYVLTGSWSEKA-LKEA-KL------------LG-ETHIAASTKANSYQS------IPDFSEFQLN----ENDAYLHIT  148 (360)
T ss_dssp             EEEEECSHHHHHH-HHHH-HT------------TS-EEEEEEECGGGTSCS------CCCGGGCCCC----TTEEEEEEE
T ss_pred             ccEEEecchhHHH-HHHH-HH------------hC-CeEEeecccccCcCC------ccchHhhccC----CCCCEEEEe
Confidence            2 23332222221 1111 00            02 111111110 00011      244555 443    467888888


Q ss_pred             ccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccCccceEEEEeCH
Q 011777          259 TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGLPLGAVVTTP  336 (477)
Q Consensus       259 pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pig~v~~~~  336 (477)
                      ++++++|.+.+         +|+++||+++|+||+|+.+...    ..+..+    |+++  ++|.++. .++|++++++
T Consensus       149 ~~~nptG~~~~---------~i~~~~~~~li~D~a~~~~~~~----~~~~~~----di~~~s~sK~~~~-~G~G~~~~~~  210 (360)
T 1w23_A          149 SNNTIYGTQYQ---------NFPEINHAPLIADMSSDILSRP----LKVNQF----GMIYAGAQKNLGP-SGVTVVIVKK  210 (360)
T ss_dssp             SEETTTTEECS---------SCCCCCSSCEEEECTTTTTSSC----CCGGGC----SEEEEETTTTTSC-TTCEEEEEEH
T ss_pred             CCCCCcceecc---------cccccCCceEEEechhhcCCCC----cCcccC----CEEEEEcccccCC-CCcEEEEEcH
Confidence            88888887654         2333899999999999854321    122222    5554  6699974 2489999999


Q ss_pred             HHHHhhcccc-----------cccCC-CCcHHHHHHHHHHHHhhchh----hHHHHHHHHHHHHHHHHHHHHHhCC-Cce
Q 011777          337 EIANVMAQKI-----------QFNTF-GGNPVCSAGGLAVLRVIDKE----RRQAHCADVGSHLLGRLRTLQERHD-IIG  399 (477)
Q Consensus       337 ~~~~~~~~~~-----------~~~t~-~~~~~~~aaa~a~l~~l~~~----~~~~~~~~~~~~l~~~L~~l~~~~~-~~~  399 (477)
                      ++++.+....           ...++ +.+..+++++.++++.+.++    +..++.+++.+++.+.|+++    + ...
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~  286 (360)
T 1w23_A          211 DLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDES----NGFYV  286 (360)
T ss_dssp             HHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTT----TTSSE
T ss_pred             HHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc----cCccc
Confidence            9887665422           11222 34667777777888766443    34555666666666666543    3 212


Q ss_pred             ee--e-cc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          400 DV--R-GR-GLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       400 ~v--~-g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      ..  + .. +.++++.+        +......++.+.|.++||.+.++....+++||+++...+++++++++++|+++++
T Consensus       287 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~~  358 (360)
T 1w23_A          287 GHAEKGSRSLMNVTFNL--------RNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKE  358 (360)
T ss_dssp             ESSCGGGBCSSEEEEEC--------SSHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             ccCCchhccCcEEEEEc--------CCCccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHHHHHHHHHHh
Confidence            11  2 12 44777765        2223356788889999999988754567899999988899999999999999876


Q ss_pred             h
Q 011777          476 K  476 (477)
Q Consensus       476 ~  476 (477)
                      +
T Consensus       359 ~  359 (360)
T 1w23_A          359 N  359 (360)
T ss_dssp             H
T ss_pred             h
Confidence            5

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.85  E-value=4.3e-19  Score=184.73  Aligned_cols=313  Identities=14%  Similarity=0.062  Sum_probs=185.5

Q ss_pred             HHHHHHHHHhhCCCC--CCEEEEeCChHHHHHHHHHHHHhc-------cC----Cc-eEEEEccCccCCcccccccccCC
Q 011777          140 IADFAEALASKMPGN--LKVVYFVNSGTEANELAMLMARLS-------TG----NL-GMIALRNAYHGGSSGTIGLTALN  205 (477)
Q Consensus       140 ~~~l~~~La~~~~~~--~~~v~~~~sGseA~~~Al~~ar~~-------~~----~~-~ii~~~~~yhG~~~~~~~~~~~~  205 (477)
                      ..++.++++++++.+  .+.++|++||||||..|++.++..       .|    .+ .|++.+.+|+ ....+....+..
T Consensus       134 e~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~-s~~~~~~~~g~g  212 (504)
T 2okj_A          134 EQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHY-SIKKAGAALGFG  212 (504)
T ss_dssp             HHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCT-HHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchH-HHHHHHHHcCCC
Confidence            456667788887655  568999999999999999998752       23    13 4555444443 322222221110


Q ss_pred             CCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHH
Q 011777          206 TWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK  283 (477)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~  283 (477)
                             ...+..++...  ....  |    .++|+++|+..  ...++++|++...+++.|.+.+    +++|.++|++
T Consensus       213 -------~~~v~~v~~~~--~~~~--d----~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I~~la~~  273 (504)
T 2okj_A          213 -------TDNVILIKCNE--RGKI--I----PADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEK  273 (504)
T ss_dssp             -------GGGEEEECBCT--TSCB--C----HHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHHHHHHHH
T ss_pred             -------cccEEEEecCC--CCCC--C----HHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHH
Confidence                   00223333211  1111  2    57888887621  1225788888877777887766    9999999999


Q ss_pred             hCcEEEEcCcccCccCCCCCCccccccCC-Ccceeeec--ccccCccceEEEEeCH-HHHHhh-cc---cc-cccC----
Q 011777          284 AGGVCIADEVQTGFGRTGSHYWGFETQGV-IPDIVTMA--KGIGNGLPLGAVVTTP-EIANVM-AQ---KI-QFNT----  350 (477)
Q Consensus       284 ~gillI~DEv~~gfgr~G~~~~~~~~~gv-~pDivt~s--K~lg~G~pig~v~~~~-~~~~~~-~~---~~-~~~t----  350 (477)
                      ||+++|+|++|.++.... .-+.....++ .+|+++++  |.+++++++|++++++ ++++.. ..   .. ..++    
T Consensus       274 ~g~~lhvD~a~~~~~~~~-~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~  352 (504)
T 2okj_A          274 YNLWLHVDAAWGGGLLMS-RKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDV  352 (504)
T ss_dssp             HTCEEEEEETTGGGGGGC-TTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCG
T ss_pred             cCCEEEEehhhhhHHHhC-HhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccC
Confidence            999999999999875432 1111233344 57888775  9998778999999986 465432 11   11 0111    


Q ss_pred             ------------CCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee---eccceeEEEEEeeC
Q 011777          351 ------------FGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV---RGRGLMVGMELVTD  415 (477)
Q Consensus       351 ------------~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v---~g~g~~~~i~~~~~  415 (477)
                                  ...+.+.+.++++++..-.-++..++..++.+++.+.|+++    +.+..+   ...+.++.+.+...
T Consensus       353 ~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~p~~~~v~f~~~~~  428 (504)
T 2okj_A          353 SYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR----EEFEMVFNGEPEHTNVCFWYIPQ  428 (504)
T ss_dssp             GGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----TTEEESSSSCCSSSCEEEEECCG
T ss_pred             cCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEEecCCCCeEEEEEEEeCc
Confidence                        01246666666666542112345566666677776666543    222211   13344455544321


Q ss_pred             CC-C-CCcc------HHHHHHHHHHHHHcCcee-eccCCCC--CEEEEeCC-CCCcHHHHHHHHHHHHHHHhhC
Q 011777          416 RK-E-KTPA------KAETAVLFEKLRELGVLV-GKGGLHG--NVFRIKPP-MCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       416 ~~-~-~~~~------~~~~~~~~~~l~~~Gv~v-~~~~~~~--~~iRi~p~-~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      .. . ....      ......+.+.|.++|+++ .+....+  +++||++. ..+|++||++++++|+++++++
T Consensus       429 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~  502 (504)
T 2okj_A          429 SLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL  502 (504)
T ss_dssp             GGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred             cccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            00 0 0000      011356888899999644 3222222  58999985 7789999999999999987653

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.84  E-value=8.6e-20  Score=181.56  Aligned_cols=322  Identities=11%  Similarity=0.036  Sum_probs=196.6

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc-------ccccc--CChHHHHHHHHHHhhCCCCCC-E-EEEeCC
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH-------ATTIY--LHHAIADFAEALASKMPGNLK-V-VYFVNS  163 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~-------~~~~~--~~~~~~~l~~~La~~~~~~~~-~-v~~~~s  163 (477)
                      ++.|+|..+..      ..+|+|++++.+.+.+...       ....+  ..+...+++++++++++.+.+ + +++|+|
T Consensus         3 ~~~~l~~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g   76 (362)
T 2c0r_A            3 ERAYNFNAGPA------ALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGG   76 (362)
T ss_dssp             CCCEECCSSSC------CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSH
T ss_pred             cceeeccCCCC------CCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCC
Confidence            45677755432      3689999999987754210       01111  123467899999999876543 5 578899


Q ss_pred             hHHHHHHHHHHHHhccCCceEEEEccCccCCcc-cccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHH
Q 011777          164 GTEANELAMLMARLSTGNLGMIALRNAYHGGSS-GTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQD  242 (477)
Q Consensus       164 GseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~  242 (477)
                      |++|+..+++...  .++++|++...++++... ......+ .          +..++.+.........|    .++++ 
T Consensus        77 ~t~a~~~~~~~l~--~~gd~vl~~~~~~~~~~~~~~~~~~g-~----------~~~v~~~~~~~~~~~~~----~~~~~-  138 (362)
T 2c0r_A           77 ASTQFAMIPMNFL--KEGQTANYVMTGSWASKALKEAKLIG-D----------THVAASSEASNYMTLPK----LQEIQ-  138 (362)
T ss_dssp             HHHHHHHHHHHHC--CTTCEEEEEECSHHHHHHHHHHHHHS-C----------EEEEEECGGGTTCSCCC----GGGCC-
T ss_pred             chHHHHHHHHhcC--CCCCeEEEEecCcHhHHHHHHHHHhC-C----------eEEEecccccccccCCC----HHHcc-
Confidence            9999999998653  355778877766655321 1111111 1          11222110000000001    12221 


Q ss_pred             HHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCccee--eec
Q 011777          243 HIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMA  320 (477)
Q Consensus       243 ~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~s  320 (477)
                       ++    +++++|++.+.++++|.+..+   +++|      ||+++|+||+|. +|.   ....+.  ..  |++  +++
T Consensus       139 -i~----~~t~~v~~~~~~n~tG~~~~~---l~~i------~~~~vivD~a~~-~~~---~~~~~~--~~--d~~~~s~~  196 (362)
T 2c0r_A          139 -LQ----DNAAYLHLTSNETIEGAQFKA---FPDT------GSVPLIGDMSSD-ILS---RPFDLN--QF--GLVYAGAQ  196 (362)
T ss_dssp             -CC----TTEEEEEEESEETTTTEECSS---CCCC------TTSCEEEECTTT-TTS---SCCCGG--GC--SEEEEETT
T ss_pred             -cC----CCcCEEEEeCCcCccceeccc---cccc------CCCEEEEEChhh-ccC---Cccchh--HC--cEEEEecc
Confidence             22    467877777777888875332   4443      899999999997 321   112222  22  555  578


Q ss_pred             ccccC-ccceEEEEeCHHHHHhhccc------------ccccCCCCcHHHHHHHHHHHHhhch----hhHHHHHHHHHHH
Q 011777          321 KGIGN-GLPLGAVVTTPEIANVMAQK------------IQFNTFGGNPVCSAGGLAVLRVIDK----ERRQAHCADVGSH  383 (477)
Q Consensus       321 K~lg~-G~pig~v~~~~~~~~~~~~~------------~~~~t~~~~~~~~aaa~a~l~~l~~----~~~~~~~~~~~~~  383 (477)
                      |.+|. |  +|++++++++++.+...            .....++.|+.+++++.++|+.+.+    +...++.+++.++
T Consensus       197 K~~g~~G--~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~  274 (362)
T 2c0r_A          197 KNLGPSG--VTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASL  274 (362)
T ss_dssp             TTTCCSS--CEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             ccccCcC--cEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            99973 5  89999999987666431            0122346678888889999987654    3455666666666


Q ss_pred             HHHHHHHHHHhCC-Ccee-e---eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCC
Q 011777          384 LLGRLRTLQERHD-IIGD-V---RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCF  458 (477)
Q Consensus       384 l~~~L~~l~~~~~-~~~~-v---~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~  458 (477)
                      +.+.|+++    + .... .   ...+.++++.+        +......++.+.|.++||.+.++..+.+.+||++...+
T Consensus       275 l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~  342 (362)
T 2c0r_A          275 IYDAIDQS----GGFYRGCVDVDSRSDMNITFRL--------ASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAV  342 (362)
T ss_dssp             HHHHHHTS----TTSSEESSCGGGBCSSEEEEEC--------SCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTS
T ss_pred             HHHHHHHc----CCccccCCChHHcCCcEEEEEc--------CCcchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCC
Confidence            66666543    3 2111 0   11234455544        22234567888999999988776444567999988888


Q ss_pred             cHHHHHHHHHHHHHHHhh
Q 011777          459 TKDDADFLVDALDYSMSK  476 (477)
Q Consensus       459 t~e~i~~~l~~l~~~l~~  476 (477)
                      +++|++++++.|++++++
T Consensus       343 ~~e~i~~l~~~l~~~~~~  360 (362)
T 2c0r_A          343 PYESCEALVQFMEHFKRS  360 (362)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            999999999999988764

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.84  E-value=1.3e-19  Score=183.17  Aligned_cols=321  Identities=11%  Similarity=0.018  Sum_probs=183.4

Q ss_pred             HHHHHHHHHHHhhc-cccccccC-ChHHHHHHHHHHhhC-----CCCCCEEEEeCChHHHHHHHHHHHHh-c-cCCceEE
Q 011777          115 PDVLNAIFEQSKLL-QHATTIYL-HHAIADFAEALASKM-----PGNLKVVYFVNSGTEANELAMLMARL-S-TGNLGMI  185 (477)
Q Consensus       115 p~v~~Av~~~l~~~-~~~~~~~~-~~~~~~l~~~La~~~-----~~~~~~v~~~~sGseA~~~Al~~ar~-~-~~~~~ii  185 (477)
                      |.|.+|.+..++.. .|.   |. .....+|++.+++++     +.+.....-|.+||.|+..++.+... + .+++.|+
T Consensus        65 ~~Vk~A~~~~~~~~~~~~---Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~  141 (420)
T 4h51_A           65 RVVRKAEQLLLDMNLDYE---YLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIY  141 (420)
T ss_dssp             HHHHHHHHHHHHTTCCCC---CCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEE
T ss_pred             HHHHHHHHHHhcCCCCCC---CCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEE
Confidence            77888876665542 221   21 222344444444432     11122345689999999988876543 2 3567899


Q ss_pred             EEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCC
Q 011777          186 ALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGG  265 (477)
Q Consensus       186 ~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G  265 (477)
                      +.+++|..+.......+....          ...++.+..  .++.|    .+.+.+.++... ++..+++..+.+|++|
T Consensus       142 ip~P~w~~y~~i~~~aG~~~V----------~~~~~~~~~--~~~~d----~~~~~~~l~~~~-~~~~vll~~~p~NPtG  204 (420)
T 4h51_A          142 LSDPTWPNHYGVVKAAGWKNI----------CTYAYYDPK--TVSLN----FEGMKKDILAAP-DGSVFILHQCAHNPTG  204 (420)
T ss_dssp             EEESCCTHHHHHHHHTTCCCE----------EEEECEEGG--GTEEC----HHHHHHHHHHSC-SSCEEEEESSSCTTTC
T ss_pred             EecCCchhHHHHHHHcCCeEE----------Eeecccccc--ccCCC----HHHHHHHHhccC-CCcEEEEeCCCCCCCC
Confidence            999999766544433332111          111110000  11111    345555554333 3455666666667777


Q ss_pred             eeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCC--Ccccc-ccCCCc---ceeeecccccC-ccceEEEEeCHHH
Q 011777          266 AVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH--YWGFE-TQGVIP---DIVTMAKGIGN-GLPLGAVVTTPEI  338 (477)
Q Consensus       266 ~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~--~~~~~-~~gv~p---Divt~sK~lg~-G~pig~v~~~~~~  338 (477)
                       ..++++.+++|.++|+++++++|+||+|.+|.+.+..  .+... ..+..+   -+-+|||.++. |+|+||+++..+.
T Consensus       205 -~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~  283 (420)
T 4h51_A          205 -VDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKD  283 (420)
T ss_dssp             -CCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSC
T ss_pred             -CCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccC
Confidence             5679999999999999999999999999999765411  11111 111112   23379999995 9999999886443


Q ss_pred             HHhh-------cccccccCCCCcHHHHHHHHHHHHhhc--------hhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeec
Q 011777          339 ANVM-------AQKIQFNTFGGNPVCSAGGLAVLRVID--------KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRG  403 (477)
Q Consensus       339 ~~~~-------~~~~~~~t~~~~~~~~aaa~a~l~~l~--------~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g  403 (477)
                      .+..       .........+.+..++.++...+..-.        -+.+.++++++++.+.+.|+++......-...+.
T Consensus       284 ~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q  363 (420)
T 4h51_A          284 KTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQ  363 (420)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHC
T ss_pred             HHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCC
Confidence            3322       111222334455666666665554210        0123344444455555555443111011111345


Q ss_pred             cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          404 RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       404 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .|+|.++-+.             .+.++.|+++||++.+++      ||+.+ ..+++.|+++.++|.+++++
T Consensus       364 ~GmF~~~gls-------------~e~v~~L~e~~Vy~~~~g------Ris~A-gl~~~ni~~~a~aI~~vvr~  416 (420)
T 4h51_A          364 IGMFSFLGLS-------------KAQCEYCQNHNIFITVSG------RANMA-GLTHETALMLAQTINDAVRN  416 (420)
T ss_dssp             CSSEEECCCC-------------HHHHHHHHHTTEECCTTC------EEEGG-GCCHHHHHHHHHHHHHHHC-
T ss_pred             CceEEecCcC-------------HHHHHHHHhCCEEEcCCC------EEEec-cCCHHHHHHHHHHHHHHHHH
Confidence            5777654331             133567889999988754      88754 36899999999999999875

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.84  E-value=6.9e-19  Score=183.64  Aligned_cols=315  Identities=18%  Similarity=0.167  Sum_probs=189.5

Q ss_pred             HHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc-------cC-----CceEEEEccCccCCcccccccccCCC
Q 011777          139 AIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS-------TG-----NLGMIALRNAYHGGSSGTIGLTALNT  206 (477)
Q Consensus       139 ~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~-------~~-----~~~ii~~~~~yhG~~~~~~~~~~~~~  206 (477)
                      ...++.++|+++++.+.+.++|++||||||..|++.+|.+       .|     +..|++.+. .|.....+....+.. 
T Consensus       149 le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~-~h~s~~~~~~~~g~g-  226 (515)
T 2jis_A          149 MEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKE-CHYSIQKGAAFLGLG-  226 (515)
T ss_dssp             HHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETT-SCTHHHHHHHHTTSC-
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCC-ccHHHHHHHHHcCCC-
Confidence            3567788899998766678999999999999999998742       13     114555444 444433332222210 


Q ss_pred             CCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHh
Q 011777          207 WKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKA  284 (477)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~  284 (477)
                            ...+..++...  ....+      .++|+++|+..  ...++++|+++..++++|.+.+    +++|.++|++|
T Consensus       227 ------~~~v~~v~~~~--~~~~d------~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~----l~~I~~la~~~  288 (515)
T 2jis_A          227 ------TDSVRVVKADE--RGKMV------PEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP----LEAIADVCQRH  288 (515)
T ss_dssp             ------GGGEEEECBCT--TSCBC------HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHH
T ss_pred             ------CCcEEEEecCC--CCcCC------HHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC----HHHHHHHHHHc
Confidence                  00233333211  11122      57888888621  1225788888888888887776    99999999999


Q ss_pred             CcEEEEcCcccCccCCCCCCccccccCC-Ccceeee--cccccCccceEEEEeCHH--HHHhh-c---ccc-c-------
Q 011777          285 GGVCIADEVQTGFGRTGSHYWGFETQGV-IPDIVTM--AKGIGNGLPLGAVVTTPE--IANVM-A---QKI-Q-------  347 (477)
Q Consensus       285 gillI~DEv~~gfgr~G~~~~~~~~~gv-~pDivt~--sK~lg~G~pig~v~~~~~--~~~~~-~---~~~-~-------  347 (477)
                      |+++|+|++|+++.... ..+.....++ .+|++++  +|.+++++++|+++++++  +++.. .   ... .       
T Consensus       289 g~~l~vD~a~~~~~~~~-~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~  367 (515)
T 2jis_A          289 GLWLHVDAAWGGSVLLS-QTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDV  367 (515)
T ss_dssp             TCEEEEEETTGGGGGGC-TTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCG
T ss_pred             CCeEEEehhhhhHHHhC-hhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccc
Confidence            99999999999876544 2222234455 6788876  799987788999999876  65532 1   100 0       


Q ss_pred             ---ccCC------CCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCC-C
Q 011777          348 ---FNTF------GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDR-K  417 (477)
Q Consensus       348 ---~~t~------~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~-~  417 (477)
                         .+++      ....+.+.++++++..-.-++..++..++.+++.++|+++. .+.++..  .....+.+.+.... .
T Consensus       368 ~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~-g~~~~~~--~~~~~v~f~~~p~~~~  444 (515)
T 2jis_A          368 ALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKRE-GFELVME--PEFVNVCFWFVPPSLR  444 (515)
T ss_dssp             GGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TEEESSC--CSSSEEEEEECCGGGT
T ss_pred             cCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC-CEEEeCC--CCeeEEEEEEeCcccc
Confidence               0111      11244455555555321224456677777777777776531 1111111  22233444432210 0


Q ss_pred             CC-CccH--HH----HHHHHHHHHHcCceeec-c--CCCCCEEEEeC-CCCCcHHHHHHHHHHHHHHHhhC
Q 011777          418 EK-TPAK--AE----TAVLFEKLRELGVLVGK-G--GLHGNVFRIKP-PMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       418 ~~-~~~~--~~----~~~~~~~l~~~Gv~v~~-~--~~~~~~iRi~p-~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      .. .+..  ..    ...+.+.|.++|+++.. .  ....+++||++ +..+|++||++++++|+++++++
T Consensus       445 ~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~~  515 (515)
T 2jis_A          445 GKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQDL  515 (515)
T ss_dssp             TCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Confidence            00 0111  11    12467788889976532 1  11136899999 88899999999999999988764

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.83  E-value=1.8e-20  Score=188.75  Aligned_cols=275  Identities=13%  Similarity=0.073  Sum_probs=168.3

Q ss_pred             HHHHHHHHhhCC-----CCC-CEEEEeCChHHHHHHHHHHHHhccCCc----eEEEEccCccCCcccccccccCCCCCCC
Q 011777          141 ADFAEALASKMP-----GNL-KVVYFVNSGTEANELAMLMARLSTGNL----GMIALRNAYHGGSSGTIGLTALNTWKYP  210 (477)
Q Consensus       141 ~~l~~~La~~~~-----~~~-~~v~~~~sGseA~~~Al~~ar~~~~~~----~ii~~~~~yhG~~~~~~~~~~~~~~~~~  210 (477)
                      .+|++.+++++.     ... ++|++|+|+++|+..+++....  +++    .|++.+++|.++.......+..      
T Consensus        71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~--~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~------  142 (391)
T 3bwn_A           71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSS--LARSQPVSVVAAAPFYSTYVEETTYVRSG------  142 (391)
T ss_dssp             HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHH--TSSSSSEEEEECSSCCTHHHHHHHTTCBT------
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcC--CCCCCcceEEEcCCCchhHHHHHHHcCCe------
Confidence            556666665543     123 5899999999999999987643  455    8999999998765443332211      


Q ss_pred             CCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHH-hC--cE
Q 011777          211 IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK-AG--GV  287 (477)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~-~g--il  287 (477)
                           +..++.        +.      ++++       ..++++|++...+|++|.+. +     +|   |++ |+  ++
T Consensus       143 -----~~~~~~--------d~------~~l~-------~~~~k~v~l~~p~NPtG~~~-~-----~l---~~~~~~~~~~  187 (391)
T 3bwn_A          143 -----MYKWEG--------DA------WGFD-------KKGPYIELVTSPNNPDGTIR-E-----TV---VNRPDDDEAK  187 (391)
T ss_dssp             -----TEEEEE--------ES------TTCC-------CCSCEEEEEESSCTTTCCCC-C-----CC---C-----CCCE
T ss_pred             -----EEEecC--------CH------HHcC-------CCCCEEEEECCCCCCCchhH-H-----HH---HHHhhcCCCE
Confidence                 111110        00      1111       12455665554566677555 2     23   334 66  99


Q ss_pred             EEEcCcccCccCCCCCCccccccCCCcceeeeccccc-CccceEEEEe-CHHHHHhhcccccccCCCCcHHHHHHHHHHH
Q 011777          288 CIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIG-NGLPLGAVVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAVL  365 (477)
Q Consensus       288 lI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg-~G~pig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l  365 (477)
                      +|+||+|.. +. . ..+. ...+....+.+|||.+| .|+|+||+++ ++++++.+.......+++.+++++.++.++|
T Consensus       188 ii~De~y~~-~~-~-~~l~-~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l  263 (391)
T 3bwn_A          188 VIHDFAYYW-PH-Y-TPIT-RRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKIL  263 (391)
T ss_dssp             EEEECTTCS-TT-T-SCCC-CCBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             EEEeCCCCC-CC-C-Cccc-cCCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence            999999973 21 1 1111 12233344558999998 6999999997 8899888876544446778999999999988


Q ss_pred             Hhhch--------hhHHHHHHHHHHHHHHHHHHHHHhCCCcee--------------eeccceeEEEEEeeCCCCCCccH
Q 011777          366 RVIDK--------ERRQAHCADVGSHLLGRLRTLQERHDIIGD--------------VRGRGLMVGMELVTDRKEKTPAK  423 (477)
Q Consensus       366 ~~l~~--------~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~--------------v~g~g~~~~i~~~~~~~~~~~~~  423 (477)
                      +...+        +++.+++++..+..++.+.+...+++.+..              .+..|+++|+.+...        
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~--------  335 (391)
T 3bwn_A          264 NVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE--------  335 (391)
T ss_dssp             HHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS--------
T ss_pred             hCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcH--------
Confidence            75421        334444444444444444333333332211              123456778877321        


Q ss_pred             HHHHHHHHHHHHcCceeeccCCC---CCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          424 AETAVLFEKLRELGVLVGKGGLH---GNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       424 ~~~~~~~~~l~~~Gv~v~~~~~~---~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                         ..+.+.|.++||.+.++..+   .+++||++.  .+++++++++++|.++++
T Consensus       336 ---~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~--~~~e~i~~~~~~L~~~~~  385 (391)
T 3bwn_A          336 ---TDLVSELRRHKVMSRAGERCGSDKKHVRVSML--SREDVFNVFLERLANMKL  385 (391)
T ss_dssp             ---CCHHHHHHHTTEECEEGGGGTCCTTEEEEESC--SCHHHHHHHHHHHHSCC-
T ss_pred             ---HHHHHHHHHCCEEEccCCCCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHH
Confidence               23566778899999997544   468999765  489999999999987764

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.82  E-value=4.1e-18  Score=174.86  Aligned_cols=327  Identities=14%  Similarity=-0.004  Sum_probs=191.4

Q ss_pred             CCHHHHHHHHHHHhhcccccccc--CChHHHHHHHHHHhhCCCCCC-----EEEEeCChHHHHHHHHHHHHhc-------
Q 011777          113 CHPDVLNAIFEQSKLLQHATTIY--LHHAIADFAEALASKMPGNLK-----VVYFVNSGTEANELAMLMARLS-------  178 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~~--~~~~~~~l~~~La~~~~~~~~-----~v~~~~sGseA~~~Al~~ar~~-------  178 (477)
                      .+|.+.+++.+.++........+  ......+++++++++++.+.+     .+++++|||||+..++..++..       
T Consensus        54 ~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~  133 (452)
T 2dgk_A           54 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA  133 (452)
T ss_dssp             CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            56899999988775422111111  223456788888998876544     4899999999999999887641       


Q ss_pred             cC----CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeE
Q 011777          179 TG----NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAG  254 (477)
Q Consensus       179 ~~----~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~  254 (477)
                      .|    ++.||+.+  .|..........            |+..+.+|... ..+..|    .++|+++|+    +++++
T Consensus       134 ~G~~~~~~~vi~~~--~h~~~~~~~~~~------------G~~v~~v~~~~-~~~~~d----~~~l~~~i~----~~t~~  190 (452)
T 2dgk_A          134 AGKPTDKPNLVCGP--VQICWHKFARYW------------DVELREIPMRP-GQLFMD----PKRMIEACD----ENTIG  190 (452)
T ss_dssp             TTCCCSCCEEEESS--CCHHHHHHHHHT------------TCEEEECCCBT-TBCSCC----HHHHHHHCC----TTEEE
T ss_pred             cCCCCCCcEEEECC--CcHHHHHHHHHc------------CceEEEEecCC-CCCeEC----HHHHHHHHh----hCCEE
Confidence            23    34666655  554333222221            22222222211 011112    578888876    35677


Q ss_pred             EEecccCCCCCeeeCCchhHHHHHHHHHHh------CcEEEEcCcccCccC---CCCCCccccccCCCcceeeec--ccc
Q 011777          255 FIAETIQGVGGAVELAPGYLKLVYDIVRKA------GGVCIADEVQTGFGR---TGSHYWGFETQGVIPDIVTMA--KGI  323 (477)
Q Consensus       255 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~------gillI~DEv~~gfgr---~G~~~~~~~~~gv~pDivt~s--K~l  323 (477)
                      |++...++++|.+.+    +++|.++|++|      |+++|+|++|.++..   .+...+.+..  ...|+++++  |.+
T Consensus       191 v~~~~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~hK~~  264 (452)
T 2dgk_A          191 VVPTFGVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRL--PRVKSISASGHKFG  264 (452)
T ss_dssp             EECBBSCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTTT
T ss_pred             EEEEcCCcCCcccCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCC--CCCcEEEECccccc
Confidence            777766667887776    99999999996      999999999987632   1200111111  135766654  966


Q ss_pred             cCccceEEEEeCHH-HH-Hhhccc-cc-c---------cCCCC-cHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 011777          324 GNGLPLGAVVTTPE-IA-NVMAQK-IQ-F---------NTFGG-NPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLR  389 (477)
Q Consensus       324 g~G~pig~v~~~~~-~~-~~~~~~-~~-~---------~t~~~-~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~  389 (477)
                      .+|+++|+++++++ +. +.+... .+ +         ++-.+ +.+++.+++..+..-.-++..++..++.+++.++|+
T Consensus       265 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~  344 (452)
T 2dgk_A          265 LAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIA  344 (452)
T ss_dssp             CCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999753 33 433211 01 0         01111 233334443333211113345555566666666655


Q ss_pred             HHHHhCCCceee-e----ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeecc----CC-CCCEEEEeCCCCCc
Q 011777          390 TLQERHDIIGDV-R----GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG----GL-HGNVFRIKPPMCFT  459 (477)
Q Consensus       390 ~l~~~~~~~~~v-~----g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~~-~~~~iRi~p~~~~t  459 (477)
                      +    .+.+..+ +    ....++.+.+......    .....++.+.|.++|+.+...    .. ..+++||+....+|
T Consensus       345 ~----~~~~~~~~~~~~~~~~~~v~f~~~~~~~~----~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t  416 (452)
T 2dgk_A          345 K----LGPYEFICTGRPDEGIPAVCFKLKDGEDP----GYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFE  416 (452)
T ss_dssp             T----TSSEEEEEECCTTTBSSEEEEEECTTCCC----SCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCC
T ss_pred             h----CCCeEEecCCCCCCCeEEEEEEecCcccc----cCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCC
Confidence            4    3322222 2    2445666665321100    011357888999999965422    11 24589999988889


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 011777          460 KDDADFLVDALDYSMSK  476 (477)
Q Consensus       460 ~e~i~~~l~~l~~~l~~  476 (477)
                      ++|++++++.|++++++
T Consensus       417 ~e~id~li~~l~~~~~~  433 (452)
T 2dgk_A          417 MDFAELLLEDYKASLKY  433 (452)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999988753

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.82  E-value=7.9e-19  Score=180.39  Aligned_cols=301  Identities=10%  Similarity=-0.035  Sum_probs=179.3

Q ss_pred             HHHHHHHHHHhhCCCCCCEEEEeCChH-HHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCee
Q 011777          139 AIADFAEALASKMPGNLKVVYFVNSGT-EANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIH  217 (477)
Q Consensus       139 ~~~~l~~~La~~~~~~~~~v~~~~sGs-eA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~  217 (477)
                      ...+++++++++++.+.+ ++|++||| .++..++..++...+++.||+.+..|+. ........            |+.
T Consensus       134 ~~~~~~~~la~~~g~~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s-~~~~~~~~------------G~~  199 (456)
T 2z67_A          134 LTNKILESFFKQLGLNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKS-PIKAVSFV------------GMN  199 (456)
T ss_dssp             HHHHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHH-HHHHHHHT------------TCE
T ss_pred             HHHHHHHHHHHHcCCCCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHH-HHHHHHHc------------CCC
Confidence            456788999999977655 99999999 4666677766543355557777775544 22222221            222


Q ss_pred             eecCCCCc-CCCCCCCHHHHHHHHHHHH-hccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc
Q 011777          218 HVVNPDPY-HGSFGSDAARYAQDLQDHI-DFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT  295 (477)
Q Consensus       218 ~~~~~~~~-~~~~~~~~~~~~~~le~~i-~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~  295 (477)
                      .+.++... ...+..|    +++|+++| +.....++.+|++...+++.|.+.+    +++|.++|++||+++|+||+|.
T Consensus       200 ~~~v~~~~~~~~~~~d----~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~  271 (456)
T 2z67_A          200 MRLVETVLDGDRVYVP----VEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYA  271 (456)
T ss_dssp             EEEECCEEETTEEECC----HHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTT
T ss_pred             ceEEEEeccCCCCCcC----HHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCcEEEECcch
Confidence            21111100 0001112    57888888 3211135666655555566787776    9999999999999999999987


Q ss_pred             CccCCCCCCcccc-ccCCCcceeee--cccccCccceEEEEe-CHHHHHhhcccccccCCCCc-HHHHHHHHHHHHhhch
Q 011777          296 GFGRTGSHYWGFE-TQGVIPDIVTM--AKGIGNGLPLGAVVT-TPEIANVMAQKIQFNTFGGN-PVCSAGGLAVLRVIDK  370 (477)
Q Consensus       296 gfgr~G~~~~~~~-~~gv~pDivt~--sK~lg~G~pig~v~~-~~~~~~~~~~~~~~~t~~~~-~~~~aaa~a~l~~l~~  370 (477)
                      ++.. |....... ..+ .+|++++  +|.+++++++|++++ ++++++.+.....+. .+++ .+++.+++..+....-
T Consensus       272 ~~~~-g~~~~~~~~~~~-~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~g~-~~~~~~~~~~aal~~l~~~~~  348 (456)
T 2z67_A          272 IQNN-YYLEKLKKAFKY-RVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGR-ASATPVVNTLVSLLSMGSKNY  348 (456)
T ss_dssp             TTCH-HHHHHHHHHHTS-CCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSC-BCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HhhHHHHHhhCC-CCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCcCCCCC-CCCCHHHHHHHHHHHHHHHHH
Confidence            5532 10001111 122 5777765  698777889999999 577877765433222 2233 3333333333321112


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCc---eee------
Q 011777          371 ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGV---LVG------  441 (477)
Q Consensus       371 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv---~v~------  441 (477)
                      ++..++..++.+++.++|+++..+.+.. ..... .++++.+..+.    .    ..++.+.|.++|+   -+.      
T Consensus       349 ~~~~~~~~~~~~~l~~~L~~~~~~~g~~-v~~~~-~~v~~~~~~~~----~----~~~l~~~L~~~gi~~~rv~~~~g~f  418 (456)
T 2z67_A          349 LELVKNQKNSKKLLDELLNDLSKKTGGK-FLDVE-SPIASCISVNS----D----PVEIAAKLYNLRVTGPRGIKKTDHF  418 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCC-BCCCC-CSSEEEEECSS----C----HHHHHHHHHHTTEESCEEECTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccCCE-ecCCC-CeEEEEEeccc----H----HHHHHHHHHHcCCCcceEEeecCcc
Confidence            4567788888889999888774322311 11122 44555552111    0    3467888888886   222      


Q ss_pred             cc----CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          442 KG----GLHGNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       442 ~~----~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      .+    ....+++|++++..+|++|||+++++|++++
T Consensus       419 ~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~  455 (456)
T 2z67_A          419 GNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL  455 (456)
T ss_dssp             HHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred             ccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence            00    1124689999998999999999999998764

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.82  E-value=4.4e-20  Score=189.09  Aligned_cols=287  Identities=10%  Similarity=-0.038  Sum_probs=179.9

Q ss_pred             CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCC
Q 011777          136 LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGE  215 (477)
Q Consensus       136 ~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~  215 (477)
                      ......++.+++++ ++.+ +.++++|||++|+..+++.+.  .+++.|++.+++|++........+...          
T Consensus        55 ~~~~~~~~~~~la~-~g~~-~~v~~~~G~t~a~~~~~~a~~--~~gd~Vlv~~~~h~s~~~~~~~~G~~~----------  120 (446)
T 2x3l_A           55 PEEVILKSMKQVEK-HSDY-DGYFLVNGTTSGILSVIQSFS--QKKGDILMARNVHKSVLHALDISQQEG----------  120 (446)
T ss_dssp             CSSHHHHHHHHHCS-CTTE-EEEEESSHHHHHHHHHHHTTT--TSSSCEEECTTCCHHHHHHHHHHTCCE----------
T ss_pred             cchHHHHHHHHHHh-cCCC-ceEEEeCCHHHHHHHHHHHhc--CCCCEEEEecCccHHHHHHHHHcCCeE----------
Confidence            34566788888888 8664 679999999999999998763  367889999999887765544332211          


Q ss_pred             eeeecC--CCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCc
Q 011777          216 IHHVVN--PDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEV  293 (477)
Q Consensus       216 ~~~~~~--~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv  293 (477)
                       ..++.  ...+...+..|    .+++   +.    .++++|++++ .+.+|.+.+    +++|.++|++||+++|+||+
T Consensus       121 -~~v~~~~~~~~~~~~~~d----~~~l---~~----~~~~~v~~~~-~n~~G~~~~----l~~I~~l~~~~~~~livDea  183 (446)
T 2x3l_A          121 -HFIETHQSPLTNHYNKVN----LSRL---NN----DGHKLVVLTY-PNYYGETFN----VEEVIKSLHQLNIPVLIDEA  183 (446)
T ss_dssp             -EECEEEECTTTSSEEEEE----C--------------CCEEEEES-SCTTSCCCC----HHHHHHHHHHTTCCEEEECT
T ss_pred             -EEEeCeeccccCcCCCCC----HHHH---cC----CCceEEEEEC-CCCCeEecC----HHHHHHHHHhcCCeEEEcch
Confidence             11111  00000000001    1333   22    3567777777 444787766    89999999999999999999


Q ss_pred             ccC-ccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCHHHHH--hhccc-ccccCCCCcHHHHHHHHHHHHh
Q 011777          294 QTG-FGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPEIAN--VMAQK-IQFNTFGGNPVCSAGGLAVLRV  367 (477)
Q Consensus       294 ~~g-fgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~~~~--~~~~~-~~~~t~~~~~~~~aaa~a~l~~  367 (477)
                      |++ +.+.+ ..+.....  .+|+++.|  |.++++.++|++++++++++  .+... ....+.+.+...+++..++++.
T Consensus       184 ~~~~~~f~~-~~~~~~~~--g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~  260 (446)
T 2x3l_A          184 HGAHFGLQG-FPDSTLNY--QADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQF  260 (446)
T ss_dssp             TCTTTTSTT-SCCCGGGG--TCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred             hhhhhccCC-CCCChHHc--CCCEEEECCccccccccccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence            986 33334 22222222  36777655  99887778999999887644  22211 1223445566666666666766


Q ss_pred             hchh---hHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC
Q 011777          368 IDKE---RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG  444 (477)
Q Consensus       368 l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~  444 (477)
                      ++..   ++.++.+++.++++++      ......  ...+..+++.+.         .....++.+.|.++||.+...+
T Consensus       261 l~~~g~~~~~~~~~~l~~~l~~~------g~~~~~--~~~~~~l~i~~~---------~~~~~~l~~~L~~~GI~v~~~g  323 (446)
T 2x3l_A          261 YKTYDSTLFFAKRAQLIECLENK------GFEMLQ--VDDPLKLLIKYE---------GFTGHDIQNWFMNAHIYLELAD  323 (446)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHH------TCEEEE--CSSTTEEEEECT---------TSCHHHHHHHHHHTTEEESEEC
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHc------CCEECc--CCCCeEEEEEeC---------CcCHHHHHHHHHHCCCEEEecC
Confidence            6542   2666666666666554      111111  112344555542         0114568888999999997332


Q ss_pred             CCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          445 LHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       445 ~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                        .+++|++++..+|++++ +++++|++++++
T Consensus       324 --~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~  352 (446)
T 2x3l_A          324 --DYQALAILPLWHHDDTY-LFDSLLRKIEDM  352 (446)
T ss_dssp             --SSCEEEECCCCCTTCCC-CHHHHHHHHHTC
T ss_pred             --CCEEEEEeecCCCHHHH-HHHHHHHHHHHh
Confidence              36899999998999999 999999988754

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.82  E-value=5.8e-19  Score=178.79  Aligned_cols=298  Identities=11%  Similarity=0.022  Sum_probs=185.8

Q ss_pred             cccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCC
Q 011777          129 QHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWK  208 (477)
Q Consensus       129 ~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~  208 (477)
                      .+...++.++...+++++|+++.+.  +.+++++||++|+.++++...  .++++||+..+.|++..........     
T Consensus        73 ~~~y~r~~~p~~~~le~~lA~l~g~--~~~i~~ssGt~Ai~~al~~l~--~~Gd~Vi~~~~~y~~~~~~~~~~l~-----  143 (415)
T 2fq6_A           73 ELFYGRRGTLTHFSLQQAMCELEGG--AGCVLFPCGAAAVANSILAFI--EQGDHVLMTNTAYEPSQDFCSKILS-----  143 (415)
T ss_dssp             SCCCTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHTTC--CTTCEEEEETTSCHHHHHHHHHTGG-----
T ss_pred             CccccCCCCchHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHHh--CCCCEEEEeCCCchHHHHHHHHHHH-----
Confidence            3555667788999999999999865  467788999999999988432  3567899999999875432211000     


Q ss_pred             CCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHH--hCc
Q 011777          209 YPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRK--AGG  286 (477)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~--~gi  286 (477)
                          ..|+....++.      + |    +++++++|+    +++++|++|.++|++|.+.+    +++|.++|++  ||+
T Consensus       144 ----~~G~~v~~v~~------~-d----~~~le~ai~----~~tklV~~e~~~NptG~v~d----l~~I~~la~~~~~g~  200 (415)
T 2fq6_A          144 ----KLGVTTSWFDP------L-I----GADIVKHLQ----PNTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDA  200 (415)
T ss_dssp             ----GGTCEEEEECT------T-C----GGGGGGGCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTC
T ss_pred             ----HcCcEEEEECC------C-C----HHHHHHhhc----cCCcEEEEECCCCCCCEeec----HHHHHHHHHhhcCCC
Confidence                01222222111      0 1    366777765    46899999999999998876    9999999999  999


Q ss_pred             EEEEcCcccCccCCCCCCccccccCCCccee--eecccccC-c-cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHH
Q 011777          287 VCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-G-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGL  362 (477)
Q Consensus       287 llI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~  362 (477)
                      ++|+|++|... ... ...     ....|++  +++|.+++ | ...|++++++++++.+...........++..+.+++
T Consensus       201 ~livD~a~a~~-~~~-~p~-----~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~~~~~a~~~~  273 (415)
T 2fq6_A          201 IIMIDNTWAAG-VLF-KAL-----DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITS  273 (415)
T ss_dssp             EEEEECTTTTT-TSS-CGG-----GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             EEEEECCCccc-ccC-Ccc-----ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            99999999732 112 111     2235766  57899996 4 456999999887776654322111233566666665


Q ss_pred             HHHHhhchhhHHHHHHHHHHHHHHHHHHHH--Hh--CCCce----------eeeccceeEEEEEeeCCCCCCccHHHHHH
Q 011777          363 AVLRVIDKERRQAHCADVGSHLLGRLRTLQ--ER--HDIIG----------DVRGRGLMVGMELVTDRKEKTPAKAETAV  428 (477)
Q Consensus       363 a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~--~~--~~~~~----------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~  428 (477)
                      ..++.+.  ...++..++...+.+.|++..  .+  ++...          ..++.|.++++.+...     ........
T Consensus       274 ~~l~~l~--~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~-----~~~~~~~~  346 (415)
T 2fq6_A          274 RGLRTLG--VRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKK-----LNNEELAN  346 (415)
T ss_dssp             HHHHHHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC-----CCHHHHHH
T ss_pred             hhhhHHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCC-----CCHHHHHH
Confidence            6665432  233444555556666555431  00  12110          0124677888887321     00123444


Q ss_pred             HHHHHHHcCceee------------c-----------cCCCCCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777          429 LFEKLRELGVLVG------------K-----------GGLHGNVFRIKPPMCFTKDDADFLVDALDY  472 (477)
Q Consensus       429 ~~~~l~~~Gv~v~------------~-----------~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~  472 (477)
                      +.+.+.-.++.+.            |           .+..++.|||++.+..++++|+.+.++|++
T Consensus       347 ~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~  413 (415)
T 2fq6_A          347 YLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR  413 (415)
T ss_dssp             HHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred             HHHhCCcCeEeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence            5544432232222            1           112247899999999999999998888875

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.82  E-value=7.1e-19  Score=177.43  Aligned_cols=310  Identities=12%  Similarity=0.046  Sum_probs=187.8

Q ss_pred             CCHHHHHHHHHHHhhccccccccC--ChHHHHHHHHHHhhCCCC-CCEEEE-eCChHHHHHHHHHHHHhccCCceEEEEc
Q 011777          113 CHPDVLNAIFEQSKLLQHATTIYL--HHAIADFAEALASKMPGN-LKVVYF-VNSGTEANELAMLMARLSTGNLGMIALR  188 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~~~--~~~~~~l~~~La~~~~~~-~~~v~~-~~sGseA~~~Al~~ar~~~~~~~ii~~~  188 (477)
                      .+|+|++++.+...........+.  .+...+++++++++++.+ .++|+| ++||++|++.+++.+.   +++ ++.+.
T Consensus        51 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~---~~g-v~~v~  126 (398)
T 2fyf_A           51 VRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLI---DKR-SLHLT  126 (398)
T ss_dssp             CCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTC---SSC-EEEEE
T ss_pred             CCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhc---CCC-eEEEe
Confidence            578999998763111111001121  234678999999999765 358888 9999999999998653   222 33336


Q ss_pred             cCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeee
Q 011777          189 NAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVE  268 (477)
Q Consensus       189 ~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~  268 (477)
                      .++|+..........  .+.     ..+..++.++    .+..+     .    .+.    .++++|++...++++|.+.
T Consensus       127 ~~~~~~~~~~~~~~~--~~g-----~~~~~v~~~~----g~~~~-----~----~i~----~~~~~v~~~~~~nptG~~~  182 (398)
T 2fyf_A          127 YGEFSAKFASAVSKN--PFV-----GEPIIITSDP----GSAPE-----P----QTD----PSVDVIAWAHNETSTGVAV  182 (398)
T ss_dssp             CSHHHHHHHHHHHHC--TTS-----CCCEEEECCT----TCCCC-----C----CCC----TTCSEEEEESEETTTTEEC
T ss_pred             CCHHHHHHHHHHHHh--CCC-----CceEEEecCC----CCCCC-----c----ccc----CCCCEEEEeCcCCCcceec
Confidence            667753221111100  000     0122232221    11111     0    022    3567777777788888766


Q ss_pred             CCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceee--ecccccCccceEEEEeCHHHHHhhccc-
Q 011777          269 LAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIGNGLPLGAVVTTPEIANVMAQK-  345 (477)
Q Consensus       269 ~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pig~v~~~~~~~~~~~~~-  345 (477)
                      +    +++|.++   +|+++|+||+|+.+...    ...+    .+|+++  ++|.++++.++|++++++++++.+... 
T Consensus       183 ~----~~~i~~~---~~~~vivD~a~~~~~~~----~~~~----~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~  247 (398)
T 2fyf_A          183 A----VRRPEGS---DDALVVIDATSGAGGLP----VDIA----ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIA  247 (398)
T ss_dssp             C----CCCCTTC---C-CEEEEECTTTTTTSC----CCGG----GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHH
T ss_pred             c----hHHhhhh---cCCeEEEEeccccCCcc----cCcc----cCcEEEEecCcccCCCCceEEEEECHHHHHHhhccc
Confidence            5    3333333   89999999999854321    1111    257765  559998654699999999988766310 


Q ss_pred             ---------c----------cccC-CCCcHHHHHHHHHHHHhhchh----hHHHHHHHHHHHHHHHHHHHHHhCCCceee
Q 011777          346 ---------I----------QFNT-FGGNPVCSAGGLAVLRVIDKE----RRQAHCADVGSHLLGRLRTLQERHDIIGDV  401 (477)
Q Consensus       346 ---------~----------~~~t-~~~~~~~~aaa~a~l~~l~~~----~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v  401 (477)
                               .          ...+ ++.|..+++++.++++.+.++    +..++.+++.+++.+.|+++    +.+...
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~  323 (398)
T 2fyf_A          248 ATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQER----PYTTPF  323 (398)
T ss_dssp             HTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHS----TTEEES
T ss_pred             ccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHc----CCceec
Confidence                     0          0122 345677777788888765543    34566666677777766654    222111


Q ss_pred             ---e-ccc-eeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--CCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          402 ---R-GRG-LMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--HGNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       402 ---~-g~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                         + +.+ .++++.+..        .....++.+.|.++||.+.++..  .++++||++...++++|+++++++|++++
T Consensus       324 ~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l  395 (398)
T 2fyf_A          324 VTDPGLRSQVVGTIDFVD--------DVDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVV  395 (398)
T ss_dssp             CCSGGGBCSSEEEEEECT--------TSCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             cCChhhcCCcEEEEECCC--------CCCHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence               1 123 377777621        11245788899999999987521  24789999988889999999999999998


Q ss_pred             hhC
Q 011777          475 SKL  477 (477)
Q Consensus       475 ~~l  477 (477)
                      +++
T Consensus       396 ~~~  398 (398)
T 2fyf_A          396 ERL  398 (398)
T ss_dssp             HTC
T ss_pred             HhC
Confidence            764

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.80  E-value=2e-18  Score=178.59  Aligned_cols=335  Identities=15%  Similarity=0.071  Sum_probs=195.5

Q ss_pred             EEeecCCcccccCCCCCHHHHHHHHHHHhhcc---ccccc-cC-----ChHHHHHHHHHHhhCCCCCCE---EEEeCChH
Q 011777           98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ---HATTI-YL-----HHAIADFAEALASKMPGNLKV---VYFVNSGT  165 (477)
Q Consensus        98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~---~~~~~-~~-----~~~~~~l~~~La~~~~~~~~~---v~~~~sGs  165 (477)
                      .|++.++..     ..+|+|.+|+.+.+....   +.... |.     ......++++++++++.+.+.   -++.+||+
T Consensus        46 ~i~L~a~e~-----~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs  120 (483)
T 1rv3_A           46 GLELIASEN-----FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS  120 (483)
T ss_dssp             SEECCTTCC-----CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH
T ss_pred             CeEEEcCCC-----CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH
Confidence            455554432     368999999988776421   11111 11     223445668899998765432   24556677


Q ss_pred             HHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCC--eeeecCCCC-cCCCCCCCHHHHHHHHHH
Q 011777          166 EANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGE--IHHVVNPDP-YHGSFGSDAARYAQDLQD  242 (477)
Q Consensus       166 eA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~le~  242 (477)
                      +||.++++...  .++++|++.+..|++.........     +......|  +..++++.. .....  |    .++|++
T Consensus       121 ~an~~~~~all--~pGD~Vl~~~~~~~~~~~~~~~~~-----~~~v~~~G~~~~~v~~~~~~~~~~i--D----~d~le~  187 (483)
T 1rv3_A          121 PANFAVYTALV--EPHGRIMGLDLPDGGHLTHGFMTD-----KKKISATSIFFESMAYKVNPDTGYI--D----YDRLEE  187 (483)
T ss_dssp             HHHHHHHHHHT--CTTCEEEEECGGGTCCGGGCCBCS-----SCBCSHHHHHSEEEEECBCTTTCSB--C----HHHHHH
T ss_pred             HHHHHHHHHhc--CCCCEEEEecCccCcCcchhhhhc-----ccCcccccceEEEEECccccCCCcC--C----HHHHHH
Confidence            99988887553  467889999888766533211110     00000011  233332211 11112  2    578888


Q ss_pred             HHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCcceee--e
Q 011777          243 HIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIVT--M  319 (477)
Q Consensus       243 ~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDivt--~  319 (477)
                      +++.   .++++|++ ...+.+ .+.+    +++|+++|++||++||+|++|. |+...|...+.+.    ..|+++  +
T Consensus       188 ~i~~---~~tklIi~-~~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~----~~div~~s~  254 (483)
T 1rv3_A          188 NARL---FHPKLIIA-GTSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE----HCHVVTTTT  254 (483)
T ss_dssp             HHHH---HCCSEEEE-CCSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG----TCSEEEEES
T ss_pred             HHhh---cCCcEEEE-eCCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC----CCcEEEecC
Confidence            8862   25677887 444444 3444    8999999999999999999986 3322231111111    246665  5


Q ss_pred             cccccCccceEEEEeCHH---------------HHHhhcccccccCC-CCcHHHHHHHHHHHHhhch---hhHHHHHHHH
Q 011777          320 AKGIGNGLPLGAVVTTPE---------------IANVMAQKIQFNTF-GGNPVCSAGGLAVLRVIDK---ERRQAHCADV  380 (477)
Q Consensus       320 sK~lg~G~pig~v~~~~~---------------~~~~~~~~~~~~t~-~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~  380 (477)
                      +|+|+ |++.|+++++++               +.+.+......+.. +.+...+++..++++.+.+   ++..+++.++
T Consensus       255 ~K~l~-GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~  333 (483)
T 1rv3_A          255 HKTLR-GCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVAN  333 (483)
T ss_dssp             SGGGC-CCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred             cccCC-CCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence            69995 567799999874               33333221111112 2334455555567766543   4566777777


Q ss_pred             HHHHHHHHHHHHHhCCCceeeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceee----ccC---CCCCEEEE
Q 011777          381 GSHLLGRLRTLQERHDIIGDVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVG----KGG---LHGNVFRI  452 (477)
Q Consensus       381 ~~~l~~~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~~---~~~~~iRi  452 (477)
                      .+++.+.|.++  .+.++.  .+. ..+.++++....       .....+.+.|.+.||.+.    |+.   ...+.+||
T Consensus       334 ~~~l~~~L~~~--g~~~~~--~~~~~~~~~v~~~~~g-------~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRi  402 (483)
T 1rv3_A          334 CRALSAALVEL--GYKIVT--GGSDNHLILVDLRSKG-------TDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRL  402 (483)
T ss_dssp             HHHHHHHHHHT--TCEEGG--GSCSSSEEEEEGGGGT-------CCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEE
T ss_pred             HHHHHHHHHhc--CCEecc--CCCCCceEEEeccCCC-------CCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEe
Confidence            88888777664  222111  121 235556553210       113456778888999998    653   12468999


Q ss_pred             eCCCCCc----HHHHHHHHHHHHHHHh
Q 011777          453 KPPMCFT----KDDADFLVDALDYSMS  475 (477)
Q Consensus       453 ~p~~~~t----~e~i~~~l~~l~~~l~  475 (477)
                      +++..+|    ++|+++++++|+++++
T Consensus       403 s~~~~~t~g~~~edi~~~~~~l~~~l~  429 (483)
T 1rv3_A          403 GTPALTSRGLLEKDFQKVAHFIHRGIE  429 (483)
T ss_dssp             ECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             ecCCcccCCCCHHHHHHHHHHHHHHHH
Confidence            9887667    9999999999998875

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.79  E-value=4.7e-18  Score=172.74  Aligned_cols=290  Identities=15%  Similarity=0.075  Sum_probs=176.6

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +...++.++...+|+++|+++.+.  +..++++||++|+..+++..  ..+++.||+.++.|++...........     
T Consensus        74 ~~y~r~~~p~~~~le~~lA~l~g~--~~~v~~~sG~~Ai~~al~al--~~~Gd~Vi~~~~~y~~~~~~~~~~~~~-----  144 (430)
T 3ri6_A           74 HVYSRSSNPTVEDLEQRLKNLTGA--LGVLALGSGMAAISTAILTL--ARAGDSVVTTDRLFGHTLSLFQKTLPS-----  144 (430)
T ss_dssp             ------CCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHTHHHH-----
T ss_pred             ccccCCCCHHHHHHHHHHHHHHCC--CcEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCCchhHHHHHHHHHHH-----
Confidence            344567789999999999999865  56788899999999999866  346788999999998764422111000     


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                          .|+....++..       |    +++++++++    +++++|++|+++|++|.+.+    +++|.++|++||+++|
T Consensus       145 ----~G~~~~~v~~~-------d----~~~l~~ai~----~~t~~v~~e~p~NptG~~~d----l~~i~~la~~~g~~li  201 (430)
T 3ri6_A          145 ----FGIEVRFVDVM-------D----SLAVEHACD----ETTKLLFLETISNPQLQVAD----LEALSKVVHAKGIPLV  201 (430)
T ss_dssp             ----TTCEEEEECTT-------C----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEE
T ss_pred             ----cCCEEEEeCCC-------C----HHHHHHhhC----CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEE
Confidence                12222222211       1    578888775    47899999999999997776    9999999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCcceeeecccccC-ccceEEEEe---CHHH------------------HHhhccc-c
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGN-GLPLGAVVT---TPEI------------------ANVMAQK-I  346 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~-G~pig~v~~---~~~~------------------~~~~~~~-~  346 (477)
                      +||+|+    +| .++....+|....+.+++|.+++ |..+|.+++   +..+                  ++.+... .
T Consensus       202 vD~a~~----~~-~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~  276 (430)
T 3ri6_A          202 VDTTMT----PP-YLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVF  276 (430)
T ss_dssp             EECTTS----CT-TTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHH
T ss_pred             EECCCc----cc-ccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHH
Confidence            999987    22 22222344554555578899987 555544443   2111                  1111111 0


Q ss_pred             cccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeee-----------------ccce-eE
Q 011777          347 QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR-----------------GRGL-MV  408 (477)
Q Consensus       347 ~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~-----------------g~g~-~~  408 (477)
                      .......+++.+..++..++.+.  ...++..++..++.+.|+    ++|.+..+.                 |.|. ++
T Consensus       277 ~~~g~~~~~~~a~l~l~~l~~l~--~r~~~~~~na~~la~~L~----~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~l  350 (430)
T 3ri6_A          277 QNLGPSLSPHNAYLQSLGLETMA--LRIERSCQNAQELAHWLL----SIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSIL  350 (430)
T ss_dssp             HHHCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHT----TCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEE
T ss_pred             HhcCCCCCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHh----CCCCccEEECCCCCCCccHHHHHHhCCCCceEE
Confidence            11112235666666666665442  223444555555555553    345444333                 3466 89


Q ss_pred             EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-------------------------CCCCEEEEeCCCCCcHHHH
Q 011777          409 GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-------------------------LHGNVFRIKPPMCFTKDDA  463 (477)
Q Consensus       409 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------------------------~~~~~iRi~p~~~~t~e~i  463 (477)
                      ++++.        ......++.+.++-.++.+..|+                         ...+.||++..+    |++
T Consensus       351 sf~l~--------~~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~----E~~  418 (430)
T 3ri6_A          351 TFELE--------SKEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI----EEI  418 (430)
T ss_dssp             EEECS--------SHHHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS----SCH
T ss_pred             EEEEC--------CHHHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc----CCH
Confidence            99883        22345566766655554443332                         245789997664    556


Q ss_pred             HHHHHHHHHHH
Q 011777          464 DFLVDALDYSM  474 (477)
Q Consensus       464 ~~~l~~l~~~l  474 (477)
                      +.+++.|++++
T Consensus       419 ~dl~~dl~~al  429 (430)
T 3ri6_A          419 EDLKEDILQAL  429 (430)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            66677777665

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.79  E-value=3.6e-19  Score=181.32  Aligned_cols=322  Identities=12%  Similarity=-0.030  Sum_probs=189.2

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhh-ccccccccCCh--H---HHHHHHHHHhhCC------CCCCEEEEeC
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKL-LQHATTIYLHH--A---IADFAEALASKMP------GNLKVVYFVN  162 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~-~~~~~~~~~~~--~---~~~l~~~La~~~~------~~~~~v~~~~  162 (477)
                      .+..+||..|...  ++ .++.+.+++.+.+.. ..+. ..|...  .   ..+|++.+++++.      .+.++|++|+
T Consensus        55 ~~~~i~l~~g~~~--~~-~~~~v~~a~~~~l~~~~~~~-~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~  130 (427)
T 2hox_A           55 QGCSADVASGDGL--FL-EEYWKQHKEASAVLVSPWHR-MSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGV  130 (427)
T ss_dssp             TTCCEECCSCCCG--GG-HHHHTTSHHHHCEEECTTTT-CSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEES
T ss_pred             CCceEEecCcCCC--CC-CCHHHHHhHHhhhhcCCccc-ccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeC
Confidence            4466787766542  32 345677777765521 1111 012211  1   3455555555432      3457999999


Q ss_pred             ChHHHHHHHHHHHHh------ccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHH
Q 011777          163 SGTEANELAMLMARL------STGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARY  236 (477)
Q Consensus       163 sGseA~~~Al~~ar~------~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (477)
                      |+++|+..+++....      ..+++.|++.+++|.++.......+....        .+..             |    
T Consensus       131 G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~--------~~~~-------------d----  185 (427)
T 2hox_A          131 GVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGY--------VWAG-------------N----  185 (427)
T ss_dssp             HHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTE--------EEEE-------------E----
T ss_pred             CHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeee--------eecC-------------C----
Confidence            999999999986610      23567899999999876554433322100        0110             1    


Q ss_pred             HHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcce
Q 011777          237 AQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDI  316 (477)
Q Consensus       237 ~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDi  316 (477)
                      .++|++.++    .++++|++...+|++|.+.+  +.+       +  ++..|.||.+-+  ..- .+..+. .+...-+
T Consensus       186 ~~~l~~~~~----~~~k~v~l~~p~NPtG~~~~--~~l-------~--~~~~i~d~~~~~--~~~-s~~~~~-~~~~i~~  246 (427)
T 2hox_A          186 AANYVNVSN----PEQYIEMVTSPNNPEGLLRH--AVI-------K--GCKSIYDMVYYW--PHY-TPIKYK-ADEDILL  246 (427)
T ss_dssp             GGGGTTCSC----GGGEEEEEESSCTTTCCCCC--CSS-------T--TCEEEEECTTCS--TTT-SCCCSC-BCCSEEE
T ss_pred             HHHHHHhhc----CCceEEEEcCCCCCcccccH--HHH-------c--CCCEEEeecccC--CCC-CccccC-CCceEEE
Confidence            245555443    24555555555666775554  322       2  566788887642  101 111122 2333334


Q ss_pred             eeeccccc-CccceEEEEe-CHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc---------hhhHHHHHHHHHHHHH
Q 011777          317 VTMAKGIG-NGLPLGAVVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID---------KERRQAHCADVGSHLL  385 (477)
Q Consensus       317 vt~sK~lg-~G~pig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~---------~~~~~~~~~~~~~~l~  385 (477)
                      .+|||.++ .|+|+||+++ ++++++.+.......+++.+.+++.++.++|+...         .+++.++.++..+..+
T Consensus       247 ~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  326 (427)
T 2hox_A          247 FTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERW  326 (427)
T ss_dssp             EEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHH
T ss_pred             EeChhcCCCCCceEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHH
Confidence            47899998 6999999999 58998888765555667788999998888887532         1233333333333333


Q ss_pred             HHHHHHHHhCCCce---------------eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHH-HHcCceeeccCCC---
Q 011777          386 GRLRTLQERHDIIG---------------DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKL-RELGVLVGKGGLH---  446 (477)
Q Consensus       386 ~~L~~l~~~~~~~~---------------~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~---  446 (477)
                      +.|.+...+++.+.               ..+..|+++|+++..+          ..++.+.| .++||.+.++..+   
T Consensus       327 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~----------~~~~~~~ll~~~gI~v~pg~~f~~~  396 (427)
T 2hox_A          327 VNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE----------EDKDCYQTFQNGRINTQNGVGFEAS  396 (427)
T ss_dssp             HHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG----------GGCSHHHHHHHTTEECEEGGGGTSC
T ss_pred             HHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCCc----------HHHHHHHHHHHCCEEEcCCCccCCC
Confidence            44444333332111               1122377888887321          12355555 4789999987543   


Q ss_pred             CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          447 GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       447 ~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .+++||++.  .+++++++++++|.+++++
T Consensus       397 ~~~~Ris~~--~~~e~l~~~l~~l~~~~~~  424 (427)
T 2hox_A          397 SRYVRLSLI--KTQDDFDQLMYYLKDMVKA  424 (427)
T ss_dssp             TTEEEEECS--SCHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEEec--CCHHHHHHHHHHHHHHHhh
Confidence            468999765  4899999999999998753

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.79  E-value=1.6e-17  Score=172.62  Aligned_cols=327  Identities=17%  Similarity=0.069  Sum_probs=191.2

Q ss_pred             CCCHHHHHHHHHHHhhcccccccc--CChHHHHHHHHHHhhCCCC--CC---EEEEeCChHHHHHHHHHHHHhcc-----
Q 011777          112 HCHPDVLNAIFEQSKLLQHATTIY--LHHAIADFAEALASKMPGN--LK---VVYFVNSGTEANELAMLMARLST-----  179 (477)
Q Consensus       112 h~~p~v~~Av~~~l~~~~~~~~~~--~~~~~~~l~~~La~~~~~~--~~---~v~~~~sGseA~~~Al~~ar~~~-----  179 (477)
                      +.+|.+.+++.+.+.........+  ..+...+++++|+++++.+  .+   ...+++||+||+..++..++...     
T Consensus        67 ~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~  146 (502)
T 3hbx_A           67 WMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK  146 (502)
T ss_dssp             CCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHH
Confidence            368999999988766532211111  1233457778888888654  22   34579999999999998765420     


Q ss_pred             --C----CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCee
Q 011777          180 --G----NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA  253 (477)
Q Consensus       180 --~----~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a  253 (477)
                        |    +..|++..++|..+...+... +.          .+..++... ....++      +++|+++++    +++.
T Consensus       147 ~~G~~~~~~~vi~~~~~h~s~~~~~~~~-G~----------~~~~v~~~~-~~~~~d------~~~l~~~i~----~~t~  204 (502)
T 3hbx_A          147 AEGKPVDKPNIVTGANVQVCWEKFARYF-EV----------ELKEVKLSE-GYYVMD------PQQAVDMVD----ENTI  204 (502)
T ss_dssp             HTTCCCSCCEEEEETTCCHHHHHHHHHT-TC----------EEEEECCBT-TBCSCC------HHHHHHHCC----TTEE
T ss_pred             hcCCCCCCcEEEEcCCchHHHHHHHHHc-Cc----------eeEEEecCC-CcCcCC------HHHHHHHHh----hCCE
Confidence              2    126776666654432222211 11          122222111 001112      578888776    3567


Q ss_pred             EEEecccCCCCCeeeCCchhHHHHHHHHHHh------CcEEEEcCcccCccC---CCCCCccccccCCCcceeee--ccc
Q 011777          254 GFIAETIQGVGGAVELAPGYLKLVYDIVRKA------GGVCIADEVQTGFGR---TGSHYWGFETQGVIPDIVTM--AKG  322 (477)
Q Consensus       254 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~------gillI~DEv~~gfgr---~G~~~~~~~~~gv~pDivt~--sK~  322 (477)
                      +|++...++++|.+.+    +++|.++|+++      |+++|+|++|.++..   .+...+.+..  ...|.+++  .|.
T Consensus       205 ~v~~~~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~--~~~D~v~~s~hK~  278 (502)
T 3hbx_A          205 CVAAILGSTLNGEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRL--PLVKSINVSGHKY  278 (502)
T ss_dssp             EEEEEBSCTTTCCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTT
T ss_pred             EEEEecCCCCCCcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCC--CCceEEEECcccc
Confidence            7766666666787776    99999999999      999999999987631   2211111121  23466644  487


Q ss_pred             ccCccceEEEEeCH-HHH-Hhhcc--cccc-----cC--CCCcHHHHHHHHHHHHhhchh---hHHHHHHHHHHHHHHHH
Q 011777          323 IGNGLPLGAVVTTP-EIA-NVMAQ--KIQF-----NT--FGGNPVCSAGGLAVLRVIDKE---RRQAHCADVGSHLLGRL  388 (477)
Q Consensus       323 lg~G~pig~v~~~~-~~~-~~~~~--~~~~-----~t--~~~~~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L  388 (477)
                      +.++.++|+++.+. +.. +.+..  ...+     .+  ++.+....++..++++.+..+   +..++..++.+++.+.|
T Consensus       279 l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L  358 (502)
T 3hbx_A          279 GLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGL  358 (502)
T ss_dssp             TCCCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77778899888763 433 22211  0000     01  222222334444455544333   44556666666776666


Q ss_pred             HHHHHhCCCceeee--ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-----CCCEEEEeCCCCCcHH
Q 011777          389 RTLQERHDIIGDVR--GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-----HGNVFRIKPPMCFTKD  461 (477)
Q Consensus       389 ~~l~~~~~~~~~v~--g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~iRi~p~~~~t~e  461 (477)
                      .++    +.+..+.  ....++.+.+..+.      ......+.+.|.++|+++.....     ...++||+....+|++
T Consensus       359 ~~~----~~~~~~~~~~~~~~v~f~~~~~~------~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~e  428 (502)
T 3hbx_A          359 EKT----ERFNIVSKDEGVPLVAFSLKDSS------CHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRT  428 (502)
T ss_dssp             HTT----TCEEECSCSSSSSEEEEEESSCS------SCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHH
T ss_pred             HhC----CCEEEEeCCCCceEEEEEecCCC------cCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHH
Confidence            553    3222222  23456666663211      01134788999999998753211     2358999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 011777          462 DADFLVDALDYSMSK  476 (477)
Q Consensus       462 ~i~~~l~~l~~~l~~  476 (477)
                      |++.+++.|++++++
T Consensus       429 did~li~~L~~~l~~  443 (502)
T 3hbx_A          429 LAERLVIDIEKVMRE  443 (502)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998764

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.78  E-value=8.2e-18  Score=171.03  Aligned_cols=293  Identities=11%  Similarity=0.009  Sum_probs=181.7

Q ss_pred             CCHHHHHHHHHHHhhccc----cccccCChHHHHHHHHHHhhCCCCCCEEEE---eCChHHHHHHHHHHHHhccCCceEE
Q 011777          113 CHPDVLNAIFEQSKLLQH----ATTIYLHHAIADFAEALASKMPGNLKVVYF---VNSGTEANELAMLMARLSTGNLGMI  185 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~----~~~~~~~~~~~~l~~~La~~~~~~~~~v~~---~~sGseA~~~Al~~ar~~~~~~~ii  185 (477)
                      ++++|++|+.++.....+    ....|..+.+.+++++++++++..  ...+   ++||++|++.+++...  .+++.|+
T Consensus        36 n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~~--~~~~~i~~~sGt~Ai~~al~al~--~~Gd~Vl  111 (431)
T 3ht4_A           36 NQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAE--AGLVRPQIISGTHAISTALFGIL--RPGDELL  111 (431)
T ss_dssp             HHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTCS--EECCBTTSCSHHHHHHHHHHTTC--CTTCEEE
T ss_pred             HHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCCC--cccccceeeCHHHHHHHHHHHhC--CCCCEEE
Confidence            467888888775322111    112355677889999999998653  3333   5699999999987542  3567888


Q ss_pred             EEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecc-cCCCC
Q 011777          186 ALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAET-IQGVG  264 (477)
Q Consensus       186 ~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~ep-i~~~~  264 (477)
                      +.++..|+.+...+..++.  ++......|...+.++.......+      +++|+++++    +++++|++++ .++++
T Consensus       112 ~~~~~~y~~~~~~~~l~g~--~~~~~~~~G~~~~~v~~~~~~~~d------~e~l~~~l~----~~tk~V~i~~sp~np~  179 (431)
T 3ht4_A          112 YITGKPYDTLEEIVGVRGK--GVGSFKEYNIGYNAVPLTEGGLVD------FEAVAAAIH----SNTKMIGIQRSKGYAT  179 (431)
T ss_dssp             ECSSSCCTTHHHHTTSSSC--SSSCSGGGTCEEEECCBCTTSSBC------HHHHHHHCC----TTEEEEEEECSCTTSS
T ss_pred             EeCCCCchhHHHHHhhccc--ccchHHHcCCEEEEeCCCCCCCcC------HHHHHhhcC----CCCeEEEEECCCCCCC
Confidence            8874455555544443322  111111124444333322111112      578888775    4789999995 55455


Q ss_pred             CeeeCCchhHHHHHHHHHH--hCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc--cceEEEEeCHHHHH
Q 011777          265 GAVELAPGYLKLVYDIVRK--AGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG--LPLGAVVTTPEIAN  340 (477)
Q Consensus       265 G~~~~~~~~l~~l~~l~~~--~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G--~pig~v~~~~~~~~  340 (477)
                      | ...+...+++|.++|++  ||+++|+||+|+.+.... ...   ..+....+.+++|.++||  .+.|++++++++++
T Consensus       180 ~-~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~-~~~---~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~  254 (431)
T 3ht4_A          180 R-PSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQ-EPC---HVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVE  254 (431)
T ss_dssp             S-CCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSC-CGG---GTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHH
T ss_pred             C-CcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCC-Ccc---ccCCeEEEcCccccCCCCCCCceEEEEecHHHHH
Confidence            4 45577889999999999  999999999999776544 222   224444455789999974  56699999999988


Q ss_pred             hhcccc----cccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhC-CCceeeeccceeEEEEEeeC
Q 011777          341 VMAQKI----QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERH-DIIGDVRGRGLMVGMELVTD  415 (477)
Q Consensus       341 ~~~~~~----~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~-~~~~~v~g~g~~~~i~~~~~  415 (477)
                      .+....    .+.+.+.++..+.+++..++.+  +...++..++..++.+.|+++..+. |. ...++.++++.+.+.  
T Consensus       255 ~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~~L~~~g~~v~p~-~~~~~~~li~~i~l~--  329 (431)
T 3ht4_A          255 ACAYRLTSPGIGAEAGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAAFLEKLGMNTSPA-WNAPRTDLIQSVQFD--  329 (431)
T ss_dssp             HHHHHHSCTTTTTSCSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCCEESC-TTSCCSSSCCEEECC--
T ss_pred             HHHHHhccCCcccccCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHHHHHhCcCEecCC-CCCCCccEEEEEEeC--
Confidence            876421    1122222222233344445433  3456777788888888888763211 11 223455667888773  


Q ss_pred             CCCCCccHHHHHHHHHHHHHcC
Q 011777          416 RKEKTPAKAETAVLFEKLRELG  437 (477)
Q Consensus       416 ~~~~~~~~~~~~~~~~~l~~~G  437 (477)
                            +.....++++.|.+..
T Consensus       330 ------~~~~~~~~~~~l~~~~  345 (431)
T 3ht4_A          330 ------DKDRMIAFCQAIQYAS  345 (431)
T ss_dssp             ------CHHHHHHHHHHHHHTS
T ss_pred             ------CHHHHHHHHHHHHhcC
Confidence                  2345677888888763

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.78  E-value=1.2e-16  Score=166.44  Aligned_cols=313  Identities=14%  Similarity=0.064  Sum_probs=178.8

Q ss_pred             HHHHHHHHHHhhCCCC--CCEEEEeCChHHHHHHHHHHHHhcc------------CCceEEEEccCccCCcccccccccC
Q 011777          139 AIADFAEALASKMPGN--LKVVYFVNSGTEANELAMLMARLST------------GNLGMIALRNAYHGGSSGTIGLTAL  204 (477)
Q Consensus       139 ~~~~l~~~La~~~~~~--~~~v~~~~sGseA~~~Al~~ar~~~------------~~~~ii~~~~~yhG~~~~~~~~~~~  204 (477)
                      ...+++++++++++.+  .+.++|++|||+||..|+..++...            ++..|++.+.. |.....+....+.
T Consensus       136 le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~-H~s~~~~~~~~g~  214 (511)
T 3vp6_A          136 MEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQS-HYSIKKAGAALGF  214 (511)
T ss_dssp             HHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTS-CTHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCc-hHHHHHHHHHcCC
Confidence            3456667778777654  3589999999999999999887531            23344444444 4333222222221


Q ss_pred             CCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHH
Q 011777          205 NTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVR  282 (477)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~  282 (477)
                      ..       ..+..++...  ....+      .++|+++|+..  ....+.+|+++..+++.|.+.+    |++|.++|+
T Consensus       215 g~-------~~~~~v~~d~--~~~~d------~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~----l~~I~~ia~  275 (511)
T 3vp6_A          215 GT-------DNVILIKCNE--RGKII------PADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICE  275 (511)
T ss_dssp             CG-------GGEEEECBCT--TSCBC------HHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC----HHHHHHHHH
T ss_pred             CC-------CcEEEeecCC--CCccC------HHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc----HHHHHHHHH
Confidence            00       0122222211  11122      58888888632  2223778888888888887766    999999999


Q ss_pred             HhCcEEEEcCcccCccCCCCCCccccccCC-Ccceee--ecccccCccceEEEEeCHH-HHHhhccc--ccc--------
Q 011777          283 KAGGVCIADEVQTGFGRTGSHYWGFETQGV-IPDIVT--MAKGIGNGLPLGAVVTTPE-IANVMAQK--IQF--------  348 (477)
Q Consensus       283 ~~gillI~DEv~~gfgr~G~~~~~~~~~gv-~pDivt--~sK~lg~G~pig~v~~~~~-~~~~~~~~--~~~--------  348 (477)
                      +||+++++|++|.+..... .-+.....|+ ..|+++  .+|.+++.+..|+++.+.+ +.......  .+.        
T Consensus       276 ~~~~~lhvD~a~~~~~~~~-~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~  354 (511)
T 3vp6_A          276 KYNLWLHVDAAWGGGLLMS-RKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYD  354 (511)
T ss_dssp             HHTCEEEEEETTGGGGGGC-TTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSC
T ss_pred             HcCCEEEEEccchhhHhhC-hhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccccc
Confidence            9999999999998643322 1111222233 457776  4599987677888888654 44432110  000        


Q ss_pred             -------cCC----CCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee---eccceeEEEEEee
Q 011777          349 -------NTF----GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV---RGRGLMVGMELVT  414 (477)
Q Consensus       349 -------~t~----~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v---~g~g~~~~i~~~~  414 (477)
                             .++    ..+.+.+.+++..+..-.-+++.++..++.+++++.|+++    +.+.-+   .....++.+.+..
T Consensus       355 ~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~----pg~~l~~~~~p~~~~v~f~~~p  430 (511)
T 3vp6_A          355 VSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR----EEFEMVFNGEPEHTNVCFWYIP  430 (511)
T ss_dssp             GGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC----TTEEESSSSCCSSSCEEEEECC
T ss_pred             cccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEEecCCCCeEEEEEEEeC
Confidence                   000    1134444444443321112456667777777777777553    322221   2344455555432


Q ss_pred             CCCCC-Ccc-------HHHHHHHHHHHHHcCceeecc---CCCCCEEEEeC-CCCCcHHHHHHHHHHHHHHHhh
Q 011777          415 DRKEK-TPA-------KAETAVLFEKLRELGVLVGKG---GLHGNVFRIKP-PMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       415 ~~~~~-~~~-------~~~~~~~~~~l~~~Gv~v~~~---~~~~~~iRi~p-~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ..... ...       .....++.+.|.++|+++...   ....+++|+++ +..++++||+.+++.|++.-++
T Consensus       431 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~  504 (511)
T 3vp6_A          431 QSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQD  504 (511)
T ss_dssp             GGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            21100 001       112346888999999755431   11124799988 6788999999999999887543

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.76  E-value=4.9e-17  Score=167.28  Aligned_cols=319  Identities=16%  Similarity=0.118  Sum_probs=178.9

Q ss_pred             CCHHHHHHHHHHHhh-cccc--cccc------CChHHHHHHHHHHhhCCCCCC---EEEEeCChHHHHHHHHHHHHhccC
Q 011777          113 CHPDVLNAIFEQSKL-LQHA--TTIY------LHHAIADFAEALASKMPGNLK---VVYFVNSGTEANELAMLMARLSTG  180 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~-~~~~--~~~~------~~~~~~~l~~~La~~~~~~~~---~v~~~~sGseA~~~Al~~ar~~~~  180 (477)
                      .+|+|.+|+.+.+.+ ..+.  ...+      ........+++++++++.+.+   ..++++||++||.++++...  .+
T Consensus        66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~--~p  143 (490)
T 2a7v_A           66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL--QP  143 (490)
T ss_dssp             CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC--CS
T ss_pred             CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHc--CC
Confidence            589999999887643 2111  1111      112223445889999976553   34677799999999998653  36


Q ss_pred             CceEEEEccCccCCcc-cc------cccccCCCCCCCCCCCCeeeecCC-CCcCCCCCCCHHHHHHHHHHHHhccCCCCe
Q 011777          181 NLGMIALRNAYHGGSS-GT------IGLTALNTWKYPIPQGEIHHVVNP-DPYHGSFGSDAARYAQDLQDHIDFGTSGKV  252 (477)
Q Consensus       181 ~~~ii~~~~~yhG~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~le~~i~~~~~~~~  252 (477)
                      +++|++.+..|.|+.. +.      ....+.          .+..++++ ++.....  |    .++|++++...   ++
T Consensus       144 GD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~----------~~~~~~~~vd~~~~~i--D----~d~le~~l~~~---~~  204 (490)
T 2a7v_A          144 HDRIMGLDLPDGGHLTHGYMSDVKRISATSI----------FFESMPYKLNPKTGLI--D----YNQLALTARLF---RP  204 (490)
T ss_dssp             CEECCC-----------------------------------------CCBCTTTCSB--C----HHHHHHHHHHH---CC
T ss_pred             CCEecccCccccccccchhhhcchhHHHcCC----------eEEEEecccccccCCc--C----HHHHHHHHhhc---CC
Confidence            6788887776644321 10      111110          01111111 0001111  2    58888888622   34


Q ss_pred             eEEEec-ccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCccee--eecccccCccc
Q 011777          253 AGFIAE-TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIV--TMAKGIGNGLP  328 (477)
Q Consensus       253 a~vi~e-pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G~p  328 (477)
                      ++|++. |.++   ...+    +++|+++|++||++||+|++|. |+...|.....++  +  .|++  +++|+++ |++
T Consensus       205 klIi~~~s~~~---~~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~--~--aDiv~~S~hK~l~-Gp~  272 (490)
T 2a7v_A          205 RLIIAGTSAYA---RLID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--H--ADIVTTTTHKTLR-GAR  272 (490)
T ss_dssp             SEEEECCSSCC---SCCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--T--CSEEEEESSGGGC-SCS
T ss_pred             cEEEEcCCCCC---Cccc----HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC--C--CCEEEECCcccCc-ccc
Confidence            566664 3433   2223    8999999999999999999975 4322331111122  2  4666  5679995 456


Q ss_pred             eEEEEeCHH---------------HHHhhcccccccCCCC-cHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHH
Q 011777          329 LGAVVTTPE---------------IANVMAQKIQFNTFGG-NPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLR  389 (477)
Q Consensus       329 ig~v~~~~~---------------~~~~~~~~~~~~t~~~-~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~  389 (477)
                      .|+++++++               +.+.+......++.++ ++..+++..++++.+..   +++.+++.++.+++++.|.
T Consensus       273 GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~  352 (490)
T 2a7v_A          273 SGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALL  352 (490)
T ss_dssp             CEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            699998764               3444443323333333 34445554556665432   4567788888889988887


Q ss_pred             HHHHhCCCceeeec-cceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-------CCCCEEEEeCCC----C
Q 011777          390 TLQERHDIIGDVRG-RGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-------LHGNVFRIKPPM----C  457 (477)
Q Consensus       390 ~l~~~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~iRi~p~~----~  457 (477)
                      +.  .+.++.  .+ ...++++++...       .....++.+.|.+.||.+..+.       ...+.|||..+.    .
T Consensus       353 ~~--G~~v~~--~~t~t~lv~vdl~~~-------g~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g  421 (490)
T 2a7v_A          353 ER--GYSLVS--GGTDNHLVLVDLRPK-------GLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQ  421 (490)
T ss_dssp             HT--TCEEGG--GSCSSSEEEEECTTT-------TCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTT
T ss_pred             Hc--CcEEec--CCCCCeEEEEEeCCC-------CCCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCC
Confidence            74  222111  11 234666665321       1113457778888999997431       124679996543    4


Q ss_pred             CcHHHHHHHHHHHHHHHh
Q 011777          458 FTKDDADFLVDALDYSMS  475 (477)
Q Consensus       458 ~t~e~i~~~l~~l~~~l~  475 (477)
                      ++++|++++++.|.+++.
T Consensus       422 ~~~~d~~~~~~~i~~~l~  439 (490)
T 2a7v_A          422 FREDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             CCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            689999999999988874

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.76  E-value=8.2e-17  Score=161.17  Aligned_cols=314  Identities=11%  Similarity=0.021  Sum_probs=192.3

Q ss_pred             CCHHHHHHHHHHHhhccccccccCChHHHHHHHHH-HhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCc
Q 011777          113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEAL-ASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAY  191 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~L-a~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~y  191 (477)
                      ..|++.+++.+.++...+.   ...+...+|++.+ +++++. .+.+++++||++|+..+++.+. ..+++.||+..++|
T Consensus        14 ~~~~i~~a~~~~~~~~~~~---~~~~~~~~l~~~~~a~~~g~-~~~~v~~~sgt~al~~al~~l~-~~~Gd~Vi~~~~~~   88 (377)
T 3ju7_A           14 PVIEYLDELKEIDASHIYT---NYGPINQRFEQTIMSGFFQN-RGAVTTVANATLGLMAAIQLKK-RKKGKYALMPSFTF   88 (377)
T ss_dssp             CGGGGHHHHHHHHHHTCCS---SSCHHHHHHHHHHHHHTSTT-CSEEEEESCHHHHHHHHHHHHS-CTTCCEEEEESSSC
T ss_pred             CcHHHHHHHHHHHHcCCcc---cCCHHHHHHHHHHHHHHhCC-CCeEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCCc
Confidence            3578899999988764321   1246788999999 999862 4689999999999999998652 23567899999998


Q ss_pred             cCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCc
Q 011777          192 HGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAP  271 (477)
Q Consensus       192 hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~  271 (477)
                      ++........             |...+.++... ..+..|    .+++++++... ..++++|+  |+ +..|...+  
T Consensus        89 ~~~~~~~~~~-------------G~~~~~v~~~~-~~~~~d----~~~l~~~i~~~-~~~tk~v~--~~-~~~G~~~~--  144 (377)
T 3ju7_A           89 PATPLAAIWC-------------GLEPYFIDISI-DDWYMD----KTVLWDKIEEL-KEEVAIVV--PY-ATFGSWMN--  144 (377)
T ss_dssp             THHHHHHHHT-------------TCEEEEECBCT-TTCSBC----HHHHHHHHHHH-GGGEEEEC--CB-CGGGBCCC--
T ss_pred             HHHHHHHHHc-------------CCEEEEEecCC-ccCCcC----HHHHHHHHhcC-CCCceEEE--EE-CCCCCccC--
Confidence            8754433222             22222221110 112212    47888877311 01277776  33 33565554  


Q ss_pred             hhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc-CCCcceeeec----ccccCccceEEEEe-CHHHHHhhccc
Q 011777          272 GYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ-GVIPDIVTMA----KGIGNGLPLGAVVT-TPEIANVMAQK  345 (477)
Q Consensus       272 ~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~-gv~pDivt~s----K~lg~G~pig~v~~-~~~~~~~~~~~  345 (477)
                        +++|.++|+ ||+++|+|++|+ +|.    .+..... +...|+.++|    |.+++| ..|++++ ++++.+.+...
T Consensus       145 --~~~i~~la~-~~~~vi~D~a~a-~g~----~~~~~~~g~~~~d~~~~S~~~~K~l~~g-~gG~~~~~~~~l~~~~~~~  215 (377)
T 3ju7_A          145 --LEEYEELEK-KGVPVVVDAAPG-FGL----MNGGMHYGQDFSGMIIYSFHATKPFGIG-EGGLIYSKNEEDIQRIKRM  215 (377)
T ss_dssp             --CHHHHHHHH-TTCCBEEECTTC-TTC----EETTEETTTTCSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHH
T ss_pred             --HHHHHHHHh-cCCEEEEECCCc-cCC----eECCEeccCCCCcEEEEECCCCCcCCCC-CcEEEEECCHHHHHHHHHH
Confidence              799999999 999999999997 431    1111122 2224555544    999875 4577776 46666655432


Q ss_pred             cc------------ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee-ecc---ceeEE
Q 011777          346 IQ------------FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV-RGR---GLMVG  409 (477)
Q Consensus       346 ~~------------~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g~---g~~~~  409 (477)
                      ..            +..+..+++.++.+++.++.+  +...++.+++.+++.+.|.++.. ....... .+.   ..++.
T Consensus       216 ~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l--~~~~~~~~~~~~~~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~  292 (377)
T 3ju7_A          216 GNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKW--DDKLKERTRISEWYKQLLQSNGL-MKKGWQLQKTEAVIQQFMP  292 (377)
T ss_dssp             TBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTT-TTTTCBCCCCSCBCCSSEE
T ss_pred             HhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCC-ccccccCCCCCcceEEEEE
Confidence            21            224456678877777777654  44566777777777777766421 0011111 111   11223


Q ss_pred             EEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-----------------------CCCEEEEeCCCCCcHHHHHHH
Q 011777          410 MELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-----------------------HGNVFRIKPPMCFTKDDADFL  466 (477)
Q Consensus       410 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----------------------~~~~iRi~p~~~~t~e~i~~~  466 (477)
                      +.+. +       ....+.+.+.|.++||.+.....                       ....+|+......|++|++++
T Consensus       293 ~~~~-~-------~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v  364 (377)
T 3ju7_A          293 ILCP-E-------EVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQI  364 (377)
T ss_dssp             EECC-T-------TSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHH
T ss_pred             EEeC-C-------hhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHH
Confidence            3221 1       11246789999999998865310                       024688877778899999999


Q ss_pred             HHHHHHHHh
Q 011777          467 VDALDYSMS  475 (477)
Q Consensus       467 l~~l~~~l~  475 (477)
                      ++.|.+++.
T Consensus       365 ~~~l~~~~~  373 (377)
T 3ju7_A          365 VICLGQKVV  373 (377)
T ss_dssp             HHHHTC---
T ss_pred             HHHHHHHHh
Confidence            999987764

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.76  E-value=3.5e-16  Score=161.97  Aligned_cols=326  Identities=10%  Similarity=-0.053  Sum_probs=181.9

Q ss_pred             HHHHHHHHHHhhccccccc--cCChHHHHHHHHHHhhCCCCC---------CEEEEeCChHHHHHHHHHHHHhcc-----
Q 011777          116 DVLNAIFEQSKLLQHATTI--YLHHAIADFAEALASKMPGNL---------KVVYFVNSGTEANELAMLMARLST-----  179 (477)
Q Consensus       116 ~v~~Av~~~l~~~~~~~~~--~~~~~~~~l~~~La~~~~~~~---------~~v~~~~sGseA~~~Al~~ar~~~-----  179 (477)
                      .+.+++...+.........  .......+++++++++++.+.         ..++||+||||||..|+..++...     
T Consensus        89 ~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~  168 (486)
T 1js3_A           89 MLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQ  168 (486)
T ss_dssp             HHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhh
Confidence            4666666665432211111  112334567777888876543         368999999999999998876421     


Q ss_pred             ---CC-------ce--EEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc
Q 011777          180 ---GN-------LG--MIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG  247 (477)
Q Consensus       180 ---~~-------~~--ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~  247 (477)
                         |.       ++  |++.+.+|+.....+... +.          .+..++.  ......+      +++|+++|+..
T Consensus       169 ~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~-G~----------~v~~v~~--d~~~~~d------~~~L~~~i~~~  229 (486)
T 1js3_A          169 AASPGLTQGAVLEKLVAYASDQAHSSVERAGLIG-GV----------KLKAIPS--DGKFAMR------ASALQEALERD  229 (486)
T ss_dssp             HHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHH-TC----------EEEEECC--CTTSCCC------HHHHHHHHHHH
T ss_pred             ccCccchhcccCCCEEEEECCCCcHHHHHHHHhC-CC----------ceEEeec--CCCCCCC------HHHHHHHHHHH
Confidence               21       23  455555655433222211 11          1222322  1111222      58888888632


Q ss_pred             C--CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCC-Ccceeee--ccc
Q 011777          248 T--SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV-IPDIVTM--AKG  322 (477)
Q Consensus       248 ~--~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv-~pDivt~--sK~  322 (477)
                      .  ...+.+|++...+++.|.+.+    +++|.++|++||+++|+|++|.++......+ .....++ ..|.+++  +|.
T Consensus       230 ~~~g~~p~~vv~~~~~n~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~-~~~~~g~~~adsi~~~~hK~  304 (486)
T 1js3_A          230 KAAGLIPFFVVATLGTTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEF-RHLLNGVEFADSFNFNPHKW  304 (486)
T ss_dssp             HHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTT-GGGGTTGGGCSEEEECHHHH
T ss_pred             HhCCCCceEEEEeCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHH-HHHhcCccccCeeEEchhhh
Confidence            1  112235555555566776766    9999999999999999999998653221011 0011122 3476664  599


Q ss_pred             ccCccceEEEEeCHH--HHHhhccc---ccc-----------------cCCCCcHHHHHHHHHHHHhhchhhHHHHHHHH
Q 011777          323 IGNGLPLGAVVTTPE--IANVMAQK---IQF-----------------NTFGGNPVCSAGGLAVLRVIDKERRQAHCADV  380 (477)
Q Consensus       323 lg~G~pig~v~~~~~--~~~~~~~~---~~~-----------------~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~  380 (477)
                      ++..+++|+++++++  +.+.+...   ...                 .+.....+++.+++..+..-.-++..++..++
T Consensus       305 ~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~  384 (486)
T 1js3_A          305 LLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQL  384 (486)
T ss_dssp             SSCCSSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            887788999999754  24444210   000                 00012244444444443211113455666667


Q ss_pred             HHHHHHHHHHHHHhCCCceee-eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC--CCCEEEEeC-CC
Q 011777          381 GSHLLGRLRTLQERHDIIGDV-RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL--HGNVFRIKP-PM  456 (477)
Q Consensus       381 ~~~l~~~L~~l~~~~~~~~~v-~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~p-~~  456 (477)
                      .+++.+.|+++    +.+..+ ...+.++.+.+..       ......++.+.|.++|+++...+.  ..+++|++. ..
T Consensus       385 a~~l~~~L~~~----~~~~~~~~~~~~~v~f~~~~-------~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~  453 (486)
T 1js3_A          385 SHEFEAFVLQD----PRFEVCAEVTLGLVCFRLKG-------SDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSR  453 (486)
T ss_dssp             HHHHHHHHHHC----TTEEECSCCCSSEEEEEESS-------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCT
T ss_pred             HHHHHHHHhcC----CCeEEeCCCceeEEEEEecC-------hHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCC
Confidence            77777776653    222211 2344555555421       112346788888888976433222  136899985 44


Q ss_pred             CCcHHHHHHHHHHHHHHHhh
Q 011777          457 CFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       457 ~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ..|++||++++++|++++++
T Consensus       454 ~~t~~di~~~~~~l~~~~~~  473 (486)
T 1js3_A          454 KVESGHVRLAWEHIRGLAAE  473 (486)
T ss_dssp             TCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHH
Confidence            57899999999999988753

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.75  E-value=3.1e-16  Score=162.05  Aligned_cols=303  Identities=13%  Similarity=-0.023  Sum_probs=173.8

Q ss_pred             HHHHHHHHHHhhCCCCC----------CEEEEeCChHHHHHHHHHHHHhcc-----------------CCceEEEEccCc
Q 011777          139 AIADFAEALASKMPGNL----------KVVYFVNSGTEANELAMLMARLST-----------------GNLGMIALRNAY  191 (477)
Q Consensus       139 ~~~~l~~~La~~~~~~~----------~~v~~~~sGseA~~~Al~~ar~~~-----------------~~~~ii~~~~~y  191 (477)
                      ...++.++++++++.+.          ...+|++|||+||..|+..+|...                 ++..|++.+ ..
T Consensus       119 lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-~~  197 (481)
T 4e1o_A          119 LEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASD-QA  197 (481)
T ss_dssp             HHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEET-TS
T ss_pred             HHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcC-cc
Confidence            34556666777764332          267899999999999999987531                 233444444 44


Q ss_pred             cCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeEEEecccCCCCCeeeC
Q 011777          192 HGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAGFIAETIQGVGGAVEL  269 (477)
Q Consensus       192 hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~  269 (477)
                      |.....+....+            ...+.+|......++      .++|+++|+..  ....+.+|++....++.|.+.+
T Consensus       198 H~s~~~~~~~~g------------~~~~~v~~~~~~~~d------~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~  259 (481)
T 4e1o_A          198 HSSVEKAGLISL------------VKMKFLPVDDNFSLR------GEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC  259 (481)
T ss_dssp             CHHHHHHHHHHT------------CEEEEECCCTTSCCC------HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC
T ss_pred             hHHHHHHHHhCC------------CceEEEEcCCCCcCC------HHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC
Confidence            443332222222            222222221112222      58888888632  1122555666666666787766


Q ss_pred             CchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCC-Ccceeee--cccccCccceEEEEeCHH-HH-Hhhcc
Q 011777          270 APGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV-IPDIVTM--AKGIGNGLPLGAVVTTPE-IA-NVMAQ  344 (477)
Q Consensus       270 ~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv-~pDivt~--sK~lg~G~pig~v~~~~~-~~-~~~~~  344 (477)
                          +++|.++|++||+++++|++|.++...+ ..+.....|+ ..|.+++  .|.++.....|+++.+++ .. +.+..
T Consensus       260 ----l~~I~~la~~~~~~lhvDaA~g~~~~~~-~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~  334 (481)
T 4e1o_A          260 ----LSELGPICAREGLWLHIDAAYAGTAFLC-PEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSV  334 (481)
T ss_dssp             ----HHHHHHHHHHHTCEEEEECTTGGGGGGS-GGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCC
T ss_pred             ----HHHHHHHHHHcCCeEEeehhhHHHHHhC-hhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcC
Confidence                9999999999999999999998653322 1111112243 3477765  599987777888877654 32 22211


Q ss_pred             cc-c------c-----------cCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee-eccc
Q 011777          345 KI-Q------F-----------NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV-RGRG  405 (477)
Q Consensus       345 ~~-~------~-----------~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g~g  405 (477)
                      .. +      .           .+.....+.+.+++..+..-.-+++.++..++.+++.+.|+++    +.+.-+ ....
T Consensus       335 ~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~g~~~~~~~~~  410 (481)
T 4e1o_A          335 NPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRND----PSFEIPAKRHL  410 (481)
T ss_dssp             CCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----TTEECCSCCCS
T ss_pred             CchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCce
Confidence            10 0      0           0001124444444444322112445666667777777776553    222211 2234


Q ss_pred             eeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCce-eeccCCC-CCEEEEeCCC-CCcHHHHHHHHHHHHHHHhh
Q 011777          406 LMVGMELVTDRKEKTPAKAETAVLFEKLRELGVL-VGKGGLH-GNVFRIKPPM-CFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       406 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~-v~~~~~~-~~~iRi~p~~-~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .++.+.+..       ......++.+.|.++|++ +.++... ..++||+... ..|++||++++++|++++++
T Consensus       411 ~~v~f~~~~-------~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~  477 (481)
T 4e1o_A          411 GLVVFRLKG-------PNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATL  477 (481)
T ss_dssp             SEEEEEESS-------CHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCC-------chHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            455666521       223456788899998854 4443222 3579998654 45899999999999988764

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.73  E-value=9.1e-16  Score=158.24  Aligned_cols=302  Identities=11%  Similarity=-0.002  Sum_probs=172.4

Q ss_pred             HHHHHHHHHHhhCCCCC---------CEEEEeCChHHHHHHHHHHHHhcc-----------------CCceEEEEccCcc
Q 011777          139 AIADFAEALASKMPGNL---------KVVYFVNSGTEANELAMLMARLST-----------------GNLGMIALRNAYH  192 (477)
Q Consensus       139 ~~~~l~~~La~~~~~~~---------~~v~~~~sGseA~~~Al~~ar~~~-----------------~~~~ii~~~~~yh  192 (477)
                      ...++.++++++++.+.         ...+||+|||+||..|+..+|...                 ++..|++. ...|
T Consensus       114 lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s-~~~H  192 (475)
T 3k40_A          114 LEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCS-DQAH  192 (475)
T ss_dssp             HHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEE-TTSC
T ss_pred             HHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEEC-CCch
Confidence            34556667788875442         268999999999999999987542                 11234444 4444


Q ss_pred             CCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeEEEecccCCCCCeeeCC
Q 011777          193 GGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAGFIAETIQGVGGAVELA  270 (477)
Q Consensus       193 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~  270 (477)
                      -....+....            |...+.+|..... .+      .++|+++|+..  ....+.+|++....++.|.+.+ 
T Consensus       193 ~s~~~~~~~~------------g~~~~~v~~d~~~-~d------~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~-  252 (475)
T 3k40_A          193 SSVERAGLLG------------GVKLRSVQSENHR-MR------GAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY-  252 (475)
T ss_dssp             HHHHHHHHHH------------TCEEEEECCBTTB-CC------HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC-
T ss_pred             HHHHHHHHHc------------CCceEEEECCCCC-cC------HHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC-
Confidence            3333222222            2222222222222 22      58888888632  1122455665555566777766 


Q ss_pred             chhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCC-Ccceeee--cccccCccceEEEEeCHH-H-HHhhccc
Q 011777          271 PGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV-IPDIVTM--AKGIGNGLPLGAVVTTPE-I-ANVMAQK  345 (477)
Q Consensus       271 ~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv-~pDivt~--sK~lg~G~pig~v~~~~~-~-~~~~~~~  345 (477)
                         +++|.++|++||+++++|++|.+....+ ..+.....++ ..|.+++  .|.+++....|+++.+++ . .+.+...
T Consensus       253 ---l~~I~~la~~~~~~lhvD~A~~~~~~~~-~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~  328 (475)
T 3k40_A          253 ---LDECGPVGNKHNLWIHVDAAYAGSAFIC-PEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVD  328 (475)
T ss_dssp             ---HHHHHHHHHHTTCEEEEECTTGGGGGGS-GGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC-------
T ss_pred             ---HHHHHHHHHHhCCeEEEeHHhHHHHHhC-HhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCC
Confidence               9999999999999999999997642222 1111112233 3577765  599987777888888654 2 2222110


Q ss_pred             ----cc---cc-------CC-CCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCceee-eccce
Q 011777          346 ----IQ---FN-------TF-GGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIGDV-RGRGL  406 (477)
Q Consensus       346 ----~~---~~-------t~-~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g~g~  406 (477)
                          ..   ..       ++ .+-+.......++|+.+..   +++.++..++.+++.++|+++    +.+.-+ .....
T Consensus       329 ~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~g~~l~~~~~~~  404 (475)
T 3k40_A          329 PLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVAD----SRFELAAEINMG  404 (475)
T ss_dssp             --------------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----TTEEESSCCBTT
T ss_pred             ccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEecCCceE
Confidence                00   00       00 1111222333344444333   456667777777787777664    222111 22344


Q ss_pred             eEEEEEeeCCCCCCccHHHHHHHHHHHHHcCcee-eccCCC-CCEEEEeCC-CCCcHHHHHHHHHHHHHHHhh
Q 011777          407 MVGMELVTDRKEKTPAKAETAVLFEKLRELGVLV-GKGGLH-GNVFRIKPP-MCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       407 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v-~~~~~~-~~~iRi~p~-~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ++.+.+..       ......++.+.|.++|.++ .++... ..++||++. ..+|++||++++++|+++.++
T Consensus       405 iv~f~~~~-------~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~  470 (475)
T 3k40_A          405 LVCFRLKG-------SNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADE  470 (475)
T ss_dssp             EEEEEESS-------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCC-------chHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            55665521       2234567888999888754 333222 368999865 345899999999999988764

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.72  E-value=2.1e-16  Score=161.37  Aligned_cols=288  Identities=14%  Similarity=0.113  Sum_probs=166.1

Q ss_pred             hHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCee
Q 011777          138 HAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIH  217 (477)
Q Consensus       138 ~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~  217 (477)
                      +...+++++++++++.+.+++.+++||+.++++++..++ ..++++||+.++.|+............         .|+.
T Consensus       108 ~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~-~~~gd~Viv~~~~h~s~~~~~~~~a~~---------~G~~  177 (438)
T 1wyu_A          108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR-ETGRMGVLVSQGVHPEYRAVLRAYLEA---------VGAK  177 (438)
T ss_dssp             HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH-HHTCCEEEEETTSCHHHHHHHHHHHHH---------TTCE
T ss_pred             HHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHh-cCCCCEEEEcCccCHhHHHHHHHHHHH---------CCCE
Confidence            456789999999987655567899999955555544333 346778888887776543222110000         0222


Q ss_pred             eecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCc-ccC
Q 011777          218 HVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEV-QTG  296 (477)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv-~~g  296 (477)
                      .+.++.. ....+         +++ ++    +++++|+++.. +++|.+.+    +++|.++|++||+++|+|-- ++ 
T Consensus       178 v~~v~~~-~~~~d---------~~~-i~----~~t~~v~i~~p-n~tG~~~~----l~~i~~la~~~g~~vivd~d~~a-  236 (438)
T 1wyu_A          178 LLTLPLE-GGRTP---------LPE-VG----EEVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLS-  236 (438)
T ss_dssp             EEEECCB-TTBCC---------CCC-CC----TTEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTG-
T ss_pred             EEEEcCc-CCccC---------HHH-hC----CCeEEEEEECC-CCCeEEec----HHHHHHHHHHcCCEEEEEechhh-
Confidence            2222210 01111         111 32    35777777766 77787776    99999999999999995522 22 


Q ss_pred             ccCCCCCCccccccCCCcceeeec-cccc-----CccceEEEEeCHHHHHhhcccc------------------------
Q 011777          297 FGRTGSHYWGFETQGVIPDIVTMA-KGIG-----NGLPLGAVVTTPEIANVMAQKI------------------------  346 (477)
Q Consensus       297 fgr~G~~~~~~~~~gv~pDivt~s-K~lg-----~G~pig~v~~~~~~~~~~~~~~------------------------  346 (477)
                      +|... ..   ..+  .+|++++| |.++     +|.++|++++++++.+.+....                        
T Consensus       237 ~g~~~-~~---~~~--g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~  310 (438)
T 1wyu_A          237 LGVLK-PP---GAY--GADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYI  310 (438)
T ss_dssp             GGTBC-CH---HHH--TCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHH
T ss_pred             ccCcC-CC---ccC--CCCEEEECCcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeecccccccc
Confidence            32211 11   112  36787764 7543     3568999999999877653211                        


Q ss_pred             --cccCCCC---cHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCC
Q 011777          347 --QFNTFGG---NPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKE  418 (477)
Q Consensus       347 --~~~t~~~---~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~  418 (477)
                        ..+|++.   +.++..++...+..+..   ++..++..++.+++.++|+++    +.+........+..+.+..+   
T Consensus       311 r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~---  383 (438)
T 1wyu_A          311 RRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEV----PGVRPFTPKPFFNEFALALP---  383 (438)
T ss_dssp             HGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TTCEECSCSSBCSEEEEECS---
T ss_pred             chhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEECCCCCeEEEEEEeCC---
Confidence              1123332   23333222223444433   234555566666666666543    21211111123333333211   


Q ss_pred             CCccHHHHHHHHHHHHHcCcee--eccCCC-CCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          419 KTPAKAETAVLFEKLRELGVLV--GKGGLH-GNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       419 ~~~~~~~~~~~~~~l~~~Gv~v--~~~~~~-~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                           ....++.+.|.++||.+  .++..+ .+++||++...+|++|+++++++|++++
T Consensus       384 -----~~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l  437 (438)
T 1wyu_A          384 -----KDPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL  437 (438)
T ss_dssp             -----SCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             -----CCHHHHHHHHHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence                 01457888999999998  444322 5799999998899999999999998865

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.70  E-value=4.7e-16  Score=154.64  Aligned_cols=321  Identities=12%  Similarity=0.009  Sum_probs=189.1

Q ss_pred             CCCHHHHHHHHHHHhhccc-cccc--------cCChHHHHHHHHHHhhCCCCC-CEEEE-eCChHHHHHHHHHHHHhccC
Q 011777          112 HCHPDVLNAIFEQSKLLQH-ATTI--------YLHHAIADFAEALASKMPGNL-KVVYF-VNSGTEANELAMLMARLSTG  180 (477)
Q Consensus       112 h~~p~v~~Av~~~l~~~~~-~~~~--------~~~~~~~~l~~~La~~~~~~~-~~v~~-~~sGseA~~~Al~~ar~~~~  180 (477)
                      ..+|+|.+++.+.+..... ..+.        -......+.+++|+++++.+. .+|+| +.|||+|++++++-.....+
T Consensus        23 ~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~~~  102 (377)
T 3e77_A           23 MLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKA  102 (377)
T ss_dssp             CCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGGST
T ss_pred             CCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCCCC
Confidence            4689999999987754211 1110        012446788888999987643 46888 58999999999986543222


Q ss_pred             CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEeccc
Q 011777          181 NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETI  260 (477)
Q Consensus       181 ~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi  260 (477)
                      +++++....+.++... ...+.          ..|......+........      .++++..++    +++++|.+..+
T Consensus       103 Gd~v~~~~~g~~~~~~-~~~a~----------~~G~~~~~~~~~~~~~~~------~~~~~~~i~----~~t~lV~~~h~  161 (377)
T 3e77_A          103 GRCADYVVTGAWSAKA-AEEAK----------KFGTINIVHPKLGSYTKI------PDPSTWNLN----PDASYVYYCAN  161 (377)
T ss_dssp             TCEEEECCCSHHHHHH-HHHHT----------TTSEEEECSCCCSSSCSC------CCGGGCCCC----TTCSCEEEESE
T ss_pred             CCeEEEEECCHHHHHH-HHHHH----------HhCCceEEeccCCCcCCC------CChHHhccC----CCccEEEEeCc
Confidence            4677766666665421 11110          013322222221111111      122332222    45666776666


Q ss_pred             CCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHH
Q 011777          261 QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIAN  340 (477)
Q Consensus       261 ~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~  340 (477)
                      .+..|.+.|    +     +|+++|+++++|-+|+ +|.   ..+.++.+++  ...+--|.+| ...+|+++.++++.+
T Consensus       162 et~tG~~~p----i-----i~~~~~~~~~vD~~q~-~g~---~~id~~~~~~--~~~s~~K~~g-p~G~g~l~~~~~~l~  225 (377)
T 3e77_A          162 ETVHGVEFD----F-----IPDVKGAVLVCDMSSN-FLS---KPVDVSKFGV--IFAGAQKNVG-SAGVTVVIVRDDLLG  225 (377)
T ss_dssp             ETTTTEECS----S-----CCCCTTCCEEEECTTT-TTS---SCCCGGGCSE--EEEEGGGTTS-CTTCEEEEEETTSCS
T ss_pred             cCchheEch----h-----hhccCCCEEEEEcccc-cCC---CCCchhhcCE--EEEecccccC-CCccEEEEEcHHHHh
Confidence            666788776    3     4789999999999998 432   2333444442  2223339994 456889999888754


Q ss_pred             hhccc-----------ccccCCC-CcHHHHHHHHHHHHhhchh----hHHHHHHHHHHHHHHHHHHHHHhCCCc-e--ee
Q 011777          341 VMAQK-----------IQFNTFG-GNPVCSAGGLAVLRVIDKE----RRQAHCADVGSHLLGRLRTLQERHDII-G--DV  401 (477)
Q Consensus       341 ~~~~~-----------~~~~t~~-~~~~~~aaa~a~l~~l~~~----~~~~~~~~~~~~l~~~L~~l~~~~~~~-~--~v  401 (477)
                      .+...           ....+++ .|..+..+..++|+.+.++    ...++.+++.++++++|.++.   ++. .  +.
T Consensus       226 ~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~---g~~~~~~~~  302 (377)
T 3e77_A          226 FALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQ---GFYVCPVEP  302 (377)
T ss_dssp             CCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTST---TSEECCSCG
T ss_pred             hccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC---CceecCCCH
Confidence            33211           1122333 3455566666788877654    345566666666666665541   111 1  11


Q ss_pred             ecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          402 RGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       402 ~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ..+ +..+.+.+...    .++......+...+.++||.+.++-...+.+|+++...+|++|||.+++.|++++++
T Consensus       303 ~~rs~~ivsf~~~~~----~~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~  374 (377)
T 3e77_A          303 QNRSKMNIPFRIGNA----KGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM  374 (377)
T ss_dssp             GGBCSSEEEEEESST----TCCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCcEEEEEcCCC----CCchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            112 23456665321    111112245777888999998876333356999999999999999999999998764

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.68  E-value=4.7e-15  Score=149.48  Aligned_cols=287  Identities=12%  Similarity=0.090  Sum_probs=169.9

Q ss_pred             CCHHHHHHHHHHHhhc---cc-cccccCChHHHHHHHHHHhhCCCCCCEEEE---eCChHHHHHHHHHHHHhccCCceEE
Q 011777          113 CHPDVLNAIFEQSKLL---QH-ATTIYLHHAIADFAEALASKMPGNLKVVYF---VNSGTEANELAMLMARLSTGNLGMI  185 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~---~~-~~~~~~~~~~~~l~~~La~~~~~~~~~v~~---~~sGseA~~~Al~~ar~~~~~~~ii  185 (477)
                      |+++|.+++.+.....   .. ....|......+|+++++++++.  +..++   ++||++|+..+++...  .+++.||
T Consensus        30 n~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g~--e~alv~p~~~sGt~Ai~~al~all--~~GD~Vl  105 (409)
T 3jzl_A           30 NQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKT--EAALVRPQIISGTHAISTVLFGIL--RPDDELL  105 (409)
T ss_dssp             HHHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHTC--SEEEEETTSCSHHHHHHHHHHHHC--CTTCEEE
T ss_pred             hHHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhCC--CcEEEECCCccHHHHHHHHHHHhc--CCCCEEE
Confidence            4577888887754211   11 11235566788999999999865  44555   8999999999988653  3567888


Q ss_pred             EEc-cCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecc----c
Q 011777          186 ALR-NAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAET----I  260 (477)
Q Consensus       186 ~~~-~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~ep----i  260 (477)
                      +.+ +.|.+.... ....+.  +.......|+....++.......  |    +++++++++    +++++|++++    +
T Consensus       106 ~~~~~~y~~~~~~-~~~~g~--~~~~l~~~G~~~~~v~~~~~g~~--d----~e~l~~ai~----~~tklV~i~~s~g~p  172 (409)
T 3jzl_A          106 YITGQPYDTLEEI-VGIRKQ--GQGSLKDFHIGYSSVPLLENGDV--D----FPRIAKKMT----PKTKMIGIQRSRGYA  172 (409)
T ss_dssp             ECSSSCCTTHHHH-HTSSSS--SSSCTGGGTCEEEECCCCTTSCC--C----HHHHHHHCC----TTEEEEEEECSCTTS
T ss_pred             EeCCCCcHhHHHH-Hhcccc--hhhHHHHcCCEEEEeCCCCCCCc--C----HHHHHHhcc----CCCeEEEEECCCCCC
Confidence            887 666554321 111000  00000011333333322111111  2    577888775    4689999998    8


Q ss_pred             CCCCCeeeCCchhHHHHHHHHHH--hCcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccCc--cceEEEEe
Q 011777          261 QGVGGAVELAPGYLKLVYDIVRK--AGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGNG--LPLGAVVT  334 (477)
Q Consensus       261 ~~~~G~~~~~~~~l~~l~~l~~~--~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G--~pig~v~~  334 (477)
                      +++.|.+.+    +++|.++|++  ||+++|+||+|..+.... ...   ..+  .|++  +++|.++++  ...|++++
T Consensus       173 ~nptg~v~~----l~~I~~la~~~~~~~~livD~a~~~~~~~~-~p~---~~g--~Div~~S~sK~lgg~~~~~GG~v~~  242 (409)
T 3jzl_A          173 DRPSFTIEK----IKEMIVFVKNINPEVIVFVDNCYGEFVEYQ-EPP---EVG--ADIIAGSLIKNPGGGLAKTGGYIAG  242 (409)
T ss_dssp             SSCCCCHHH----HHHHHHHHHHHCTTCEEEEECTTCTTTSSC-CSG---GGT--CSEEEEETTSGGGTTTCSSCEEEEE
T ss_pred             CCCcCcccc----HHHHHHHHHhhCCCCEEEEeCCcccccccC-Ccc---ccC--CeEEEECccccCCccCCceEEEEEe
Confidence            888886655    9999999999  999999999987442111 111   123  4655  688999974  34589999


Q ss_pred             CHHHHHhhccccc----ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhC-CCceeeeccceeEE
Q 011777          335 TPEIANVMAQKIQ----FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERH-DIIGDVRGRGLMVG  409 (477)
Q Consensus       335 ~~~~~~~~~~~~~----~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~-~~~~~v~g~g~~~~  409 (477)
                      ++++++.+.....    +.+.+..+..+.+++..++.+  +...++..++..++.+.|+++..+. |. ...++..+++.
T Consensus       243 ~~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~v~p~-~~~~~~~~i~~  319 (409)
T 3jzl_A          243 KEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTAAMLAEFGVEADPV-WDAPRTDLIQS  319 (409)
T ss_dssp             CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCEEESC-TTSCCSSSCCE
T ss_pred             CHHHHHHHHHHhccccccccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhCCCcccCC-CCCCCccEEEE
Confidence            9999988765211    112222221123344444432  3456667777778888777652110 11 01112233667


Q ss_pred             EEEeeCCCCCCccHHHHHHHHHHHHHcC
Q 011777          410 MELVTDRKEKTPAKAETAVLFEKLRELG  437 (477)
Q Consensus       410 i~~~~~~~~~~~~~~~~~~~~~~l~~~G  437 (477)
                      +.+.        +.....++++.|+...
T Consensus       320 i~l~--------~~~~~~~~~~~L~~~~  339 (409)
T 3jzl_A          320 VSFH--------NKEKMVAFAQAIQAAS  339 (409)
T ss_dssp             EECS--------CHHHHHHHHHHHHHTS
T ss_pred             EEeC--------CHHHHHHHHHHHHhcC
Confidence            7662        2345677888888774

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.67  E-value=3.4e-16  Score=156.44  Aligned_cols=323  Identities=12%  Similarity=-0.001  Sum_probs=184.3

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc-cc--------cccCChHHHHHHHHHHhhCCCCC-CEEEE-eCCh
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH-AT--------TIYLHHAIADFAEALASKMPGNL-KVVYF-VNSG  164 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~-~~--------~~~~~~~~~~l~~~La~~~~~~~-~~v~~-~~sG  164 (477)
                      +.|||..+...      .+|+|++++.+.+..... ..        ..-......+.++.|+++++... ++|+| ++||
T Consensus        27 ~~yl~~agpt~------~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~  100 (386)
T 3qm2_A           27 QVFNFSSGPAM------LPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGG  100 (386)
T ss_dssp             CCEECCSSSCC------CCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCT
T ss_pred             cCccccCCCCC------CCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCc
Confidence            46888655443      589999999876643210 00        11123446788888999887643 46888 6999


Q ss_pred             HHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCC---CCcCCCCCCCHHHHHHHHH
Q 011777          165 TEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNP---DPYHGSFGSDAARYAQDLQ  241 (477)
Q Consensus       165 seA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~le  241 (477)
                      |||++++++-..  .++++++....+.++... ......     .    ..+..++.+   ...  ...      +++++
T Consensus       101 T~a~n~ai~~l~--~~gd~v~~~~~~~~~~~~-~~~a~~-----~----G~v~~v~~~~~~~G~--~~~------~~~~~  160 (386)
T 3qm2_A          101 RGQFAGVPLNLL--GDKTTADYVDAGYWAASA-IKEAKK-----Y----CAPQIIDAKITVDGK--RAV------KPMRE  160 (386)
T ss_dssp             THHHHHHHHHHC--TTCCEEEEEESSHHHHHH-HHHHTT-----T----SEEEEEECEEEETTE--EEE------CCGGG
T ss_pred             hHHHHHHHHhcc--CCCCeEEEEeCCHHHHHH-HHHHHH-----h----CCeEEEecCcccCCC--CCC------chHHH
Confidence            999999998653  245667666666665421 111100     0    012222221   100  000      13344


Q ss_pred             HHHhccCCCCeeEEEecccCCCCCee-eCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec
Q 011777          242 DHIDFGTSGKVAGFIAETIQGVGGAV-ELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA  320 (477)
Q Consensus       242 ~~i~~~~~~~~a~vi~epi~~~~G~~-~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s  320 (477)
                      ..++    +++++|.+..+.+..|.+ .|    +++|.     +|+++++|-+|+ +|.   ..+.++.++  .+..+--
T Consensus       161 ~~l~----~~t~lV~~~h~et~tG~~i~p----i~~i~-----~g~~~~vDa~qs-~g~---~pidv~~~~--~~~~s~h  221 (386)
T 3qm2_A          161 WQLS----DNAAYLHYCPNETIDGIAIDE----TPDFG-----PEVVVTADFSST-ILS---APLDVSRYG--VIYAGAQ  221 (386)
T ss_dssp             CCCC----TTCSCEEECSEETTTTEECCC----CCCCC-----TTCCEEEECTTT-TTS---SCCCGGGCS--EEEEETT
T ss_pred             hhcC----CCCcEEEEECCcCCcCEecCc----hhhhc-----CCCEEEEEcccc-cCC---CCCCccccC--EEEEecc
Confidence            3343    466777777777777875 54    34432     899999999997 442   233344444  2333344


Q ss_pred             ccccCccceEEEEeCHHHHHhhccc-----------ccccCC-CCcHHHHHHHHHHHHhhchh----hHHHHHHHHHHHH
Q 011777          321 KGIGNGLPLGAVVTTPEIANVMAQK-----------IQFNTF-GGNPVCSAGGLAVLRVIDKE----RRQAHCADVGSHL  384 (477)
Q Consensus       321 K~lg~G~pig~v~~~~~~~~~~~~~-----------~~~~t~-~~~~~~~aaa~a~l~~l~~~----~~~~~~~~~~~~l  384 (477)
                      |.+| ...+|++++++++.+.+.+.           .....+ +.|..+..+..++++.+.++    +..++.+++.+++
T Consensus       222 K~lG-P~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l  300 (386)
T 3qm2_A          222 KNIG-PAGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELL  300 (386)
T ss_dssp             TTTC-CTTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             cccC-CCccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            9994 45689999998875433211           011112 22444555666777766543    3455666667777


Q ss_pred             HHHHHHHHHhCCCce---eeeccc-eeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcH
Q 011777          385 LGRLRTLQERHDIIG---DVRGRG-LMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTK  460 (477)
Q Consensus       385 ~~~L~~l~~~~~~~~---~v~g~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~  460 (477)
                      +++|+++    ++..   +...++ ..+.+.+..      + ... ..+...|.++||.+..+-..-+.+|+++...+|+
T Consensus       301 ~~~l~~~----~~~~~~~~~~~rs~~iv~f~~~~------~-~~~-~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t~  368 (386)
T 3qm2_A          301 YGVIDNS----DFYRNDVAQANRSRMNVPFQLAD------N-TLD-KVFLEESFAAGLHALKGHRVVGGMRASIYNAMPI  368 (386)
T ss_dssp             HHHHHTC----SSEECCBCGGGBCSSEEEEEESS------G-GGH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCH
T ss_pred             HHHHHHC----CCcccCCCHHHcCceEEEEECCC------c-ccc-HHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCCH
Confidence            7766554    3211   111122 345555521      0 112 4566778899999877532224599999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 011777          461 DDADFLVDALDYSMSK  476 (477)
Q Consensus       461 e~i~~~l~~l~~~l~~  476 (477)
                      +|||++++.|+++.++
T Consensus       369 edId~l~~~l~~~~~~  384 (386)
T 3qm2_A          369 EGVKALTDFMIDFERR  384 (386)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999998764

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.64  E-value=2.5e-14  Score=144.73  Aligned_cols=285  Identities=13%  Similarity=0.074  Sum_probs=167.6

Q ss_pred             CHHHHHHHHHHHhh---cccc-ccccCChHHHHHHHHHHhhCCCCCCEEEE---eCChHHHHHHHHHHHHhccCCceEEE
Q 011777          114 HPDVLNAIFEQSKL---LQHA-TTIYLHHAIADFAEALASKMPGNLKVVYF---VNSGTEANELAMLMARLSTGNLGMIA  186 (477)
Q Consensus       114 ~p~v~~Av~~~l~~---~~~~-~~~~~~~~~~~l~~~La~~~~~~~~~v~~---~~sGseA~~~Al~~ar~~~~~~~ii~  186 (477)
                      .++|.+|+.+....   .... ...|......+|.++++++++.  +..++   ++||++|+..++....  .+++.|++
T Consensus        45 ~~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~g~--e~alv~p~~~sGt~Ai~~al~all--~pGD~Vl~  120 (427)
T 3i16_A           45 QLKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNT--ESALVRPHFVNGTHALGAALFGNL--RPGNTMLS  120 (427)
T ss_dssp             HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTC--SEEEEETTCCSHHHHHHHHHHHHC--CTTCEEEE
T ss_pred             HHHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHhCC--cceEEeCCCccHHHHHHHHHHHHh--CCCCEEEE
Confidence            46788877664211   1111 1124566688999999999865  34455   8999999999887553  35678888


Q ss_pred             Ec-cCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecc----cC
Q 011777          187 LR-NAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAET----IQ  261 (477)
Q Consensus       187 ~~-~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~ep----i~  261 (477)
                      .+ +.|++..... ....... .......|+....++.......+      .++++++++.  .+++++|++++    .+
T Consensus       121 ~~~~~y~~~~~~~-g~~~~~~-~~~l~~~G~~~~~v~~~~~g~~D------~e~l~~~l~~--~~~tklV~i~~s~~~p~  190 (427)
T 3i16_A          121 VCGEPYDTLHDVI-GITENSN-MGSLKEFGINYKQVDLKEDGKPN------LEEIEKVLKE--DESITLVHIQRSTGYGW  190 (427)
T ss_dssp             SSSSCCGGGHHHH-TCSCCCS-SCCTGGGTCEEEECCCCTTSSCC------HHHHHHHHHT--CTTEEEEEEECSCCSSS
T ss_pred             eCCCccHHHHHHH-hccccch-HHHHHHcCCEEEEecCccCCCcC------HHHHHHHhhC--CCCCEEEEEEcCCCCCC
Confidence            87 6776553211 1000000 00000113333333321111122      5788888862  14689999999    77


Q ss_pred             CCCCeeeCCchhHHHHHHHHHH--hCcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccC-c-cceEEEEeC
Q 011777          262 GVGGAVELAPGYLKLVYDIVRK--AGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-G-LPLGAVVTT  335 (477)
Q Consensus       262 ~~~G~~~~~~~~l~~l~~l~~~--~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pig~v~~~  335 (477)
                      ++.|.+.+    +++|.++|++  ||+++|+||+|..+.... ...   ..+  .|++  +++|.+++ | ...|+++++
T Consensus       191 nptg~i~d----l~~i~~la~~~~~g~~livD~a~~~~~~~~-~p~---~~g--aDiv~~S~sK~lgg~g~~~gG~i~~~  260 (427)
T 3i16_A          191 RRALLIED----IKSIVDCVKNIRKDIICFVDNCYGEFMDTK-EPT---DVG--ADLIAGSLIKNIGGGIAPTGGYLAGT  260 (427)
T ss_dssp             SCCCCHHH----HHHHHHHHHHHCTTSEEEEECTTTTTSSSS-CGG---GGT--CSEEEEETTSGGGTTTCCSCEEEEEC
T ss_pred             CCcccHHH----HHHHHHHHHHhCCCCEEEEECCCccccccC-Ccc---ccC--CeEEEecCcccCCCCCCceEEEEEEC
Confidence            77776654    9999999999  999999999997543222 111   123  3555  68899997 4 456999999


Q ss_pred             HHHHHhhcccccccCCCC--cH-HH-HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccc-----e
Q 011777          336 PEIANVMAQKIQFNTFGG--NP-VC-SAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG-----L  406 (477)
Q Consensus       336 ~~~~~~~~~~~~~~t~~~--~~-~~-~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g-----~  406 (477)
                      +++++.+........++.  .+ +. +..++..++.+  ....++..++..++.+.|+++    +... .++..     +
T Consensus       261 ~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~V-~p~~~~~~~~~  333 (427)
T 3i16_A          261 KDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLFLA--PHISMEALKGAILCSRIMELA----GFEV-MPKYDEKRSDI  333 (427)
T ss_dssp             HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEE-ESCTTSCCSSS
T ss_pred             HHHHHHHHHhcccCccCccCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhC----CCee-cCCCCCCCccE
Confidence            999988875321111111  11 22 22333333322  345666777777777777664    3211 12222     3


Q ss_pred             eEEEEEeeCCCCCCccHHHHHHHHHHHHHcC
Q 011777          407 MVGMELVTDRKEKTPAKAETAVLFEKLRELG  437 (477)
Q Consensus       407 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~G  437 (477)
                      ++.+.+.        ....+.++++.|....
T Consensus       334 i~~i~l~--------~~~~~~~f~~~l~~~~  356 (427)
T 3i16_A          334 IQSIKFN--------DKDKLIEFCKGIQTGS  356 (427)
T ss_dssp             CEEEECS--------SHHHHHHHHHHHHHTC
T ss_pred             EEEEEEC--------CHHHHHHHHHHHhhcC
Confidence            6677763        2345677888888763

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.63  E-value=1.3e-14  Score=143.65  Aligned_cols=309  Identities=10%  Similarity=-0.002  Sum_probs=181.5

Q ss_pred             CCHHHHHHHHHHHhhccc-cccc--------cCChHHHHHHHHHHhhCCCC-CCEEEE-eCChHHHHHHHHHHHHhccCC
Q 011777          113 CHPDVLNAIFEQSKLLQH-ATTI--------YLHHAIADFAEALASKMPGN-LKVVYF-VNSGTEANELAMLMARLSTGN  181 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~-~~~~--------~~~~~~~~l~~~La~~~~~~-~~~v~~-~~sGseA~~~Al~~ar~~~~~  181 (477)
                      .+|+|.+++.+.+..... ..+.        .......+.++.|+++++.+ ..+|+| |+|||||++++++-..   ++
T Consensus        16 ~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~---~~   92 (361)
T 3m5u_A           16 LPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA---LN   92 (361)
T ss_dssp             CCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC---CS
T ss_pred             CcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC---CC
Confidence            489999999987753211 0110        01245678888899998764 347887 9999999999998553   34


Q ss_pred             ceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccC
Q 011777          182 LGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQ  261 (477)
Q Consensus       182 ~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~  261 (477)
                      +++.....+.++.... .....     ..   ..+..++.+.  ...+..+    .++ +  |+    +++++|.+..+.
T Consensus        93 ~~~~~i~~~~~~~~~~-~~a~~-----~G---~~v~~~~~~~--~g~~~~~----~~~-~--l~----~~t~lv~~~~~e  150 (361)
T 3m5u_A           93 GVCEYANTGVWTKKAI-KEAQI-----LG---VNVKTVASSE--ESNFDHI----PRV-E--FS----DNADYAYICSNN  150 (361)
T ss_dssp             SCEEEEECSHHHHHHH-HHHHH-----TT---CCEEEEEECT--TTTSCSC----CCC-C--CC----TTSSEEEEESEE
T ss_pred             CeEEEEeCCHHHHHHH-HHHHH-----cC---CceEEEeccc--CcCCCcC----Chh-h--cC----CCCCEEEEeCCC
Confidence            4443333344443211 11100     00   1223332221  1111000    122 2  33    356667765555


Q ss_pred             CCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCHHHH
Q 011777          262 GVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPEIA  339 (477)
Q Consensus       262 ~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~~~  339 (477)
                      +..|.+.+.         +++ +|+++++|.+|+ +|.   ..+  +..+  .|++++|  |.+| ...+|+++.++++.
T Consensus       151 ~~tG~~~~~---------i~~-~~~~~~vD~~q~-~g~---~~i--d~~~--~d~~~~s~~K~~g-p~G~g~l~~~~~~~  211 (361)
T 3m5u_A          151 TIYGTQYQN---------YPK-TKTPLIVDASSD-FFS---RKV--DFSN--IALFYGGVQKNAG-ISGLSCIFIRKDML  211 (361)
T ss_dssp             TTTTEECSS---------CCC-CSSCEEEECGGG-TTS---SCC--CCTT--EEEEEEETTTTSS-CTTCEEEEEEHHHH
T ss_pred             CCcceeCCc---------ccc-cCCEEEEEcccc-cCC---CCC--Cccc--CCEEEEechhccC-CCccEEEEEcHHHH
Confidence            566876552         344 499999999998 442   222  2222  4778776  9994 45689999999987


Q ss_pred             Hhhcc----c--------ccccCCC-CcHHHHHHHHHHHHhhchh----hHHHHHHHHHHHHHHHHHHHHHhCC-Cce--
Q 011777          340 NVMAQ----K--------IQFNTFG-GNPVCSAGGLAVLRVIDKE----RRQAHCADVGSHLLGRLRTLQERHD-IIG--  399 (477)
Q Consensus       340 ~~~~~----~--------~~~~t~~-~~~~~~aaa~a~l~~l~~~----~~~~~~~~~~~~l~~~L~~l~~~~~-~~~--  399 (477)
                      +.+.+    .        ....+++ .|..+..+..++++.+.+.    +..++.+++.++++++|+++    + +..  
T Consensus       212 ~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~----~g~~~~~  287 (361)
T 3m5u_A          212 ERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLS----NGFYKGH  287 (361)
T ss_dssp             HHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTS----TTSEEES
T ss_pred             hhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHC----CCeeecc
Confidence            66543    0        0122333 4556666667888877554    34566666677777766554    3 211  


Q ss_pred             -eeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          400 -DVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       400 -~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                       ....+ ...+.+.+...      .... ..+...|.++||.+..+-..-+.+|+++...+|++|||.+++.|+++.++
T Consensus       288 ~~~~~rs~~ivsf~~~~~------~~~~-~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~  359 (361)
T 3m5u_A          288 ADKKDRSLMNVSFNIAKN------KDLE-PLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGK  359 (361)
T ss_dssp             SCGGGBCSSEEEEEESSC------TTHH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHcCCeEEEEECCCc------hhhh-HHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence             11112 23455555210      0112 35778888999998776322246999999999999999999999998764

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.62  E-value=2.4e-14  Score=144.92  Aligned_cols=284  Identities=11%  Similarity=0.069  Sum_probs=167.3

Q ss_pred             CCHHHHHHHHHHHhhccc----cccccCChHHHHHHHHHHhhCCCCCCEEEE---eCChHHHHHHHHHHHHhccCCceEE
Q 011777          113 CHPDVLNAIFEQSKLLQH----ATTIYLHHAIADFAEALASKMPGNLKVVYF---VNSGTEANELAMLMARLSTGNLGMI  185 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~----~~~~~~~~~~~~l~~~La~~~~~~~~~v~~---~~sGseA~~~Al~~ar~~~~~~~ii  185 (477)
                      ++++|.+|+.+......+    ....|......+|+++++++++.  +..++   ++||++|+..++...  ..+++.|+
T Consensus        45 n~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g~--e~alv~p~~~sGt~A~~~al~al--l~pGD~Vl  120 (427)
T 3hvy_A           45 NQLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNT--ESAFVRPHFVNGTHAIGAALFGN--LRPNDTMM  120 (427)
T ss_dssp             HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTC--SEEEEETTCCSHHHHHHHHHHHT--CCTTCEEE
T ss_pred             hHHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhCC--CceEEeCCCCcHHHHHHHHHHHh--cCCCCEEE
Confidence            457888888764322111    11234556688999999999865  44555   899999999988754  23678888


Q ss_pred             EEc-cCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecc----c
Q 011777          186 ALR-NAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAET----I  260 (477)
Q Consensus       186 ~~~-~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~ep----i  260 (477)
                      +.+ +.|++..... ..... .+.......|+....++. .....  |    .++++++++.  ..++++|++++    .
T Consensus       121 ~~~~~~y~~~~~~~-g~~~~-~~~~~l~~~G~~~~~v~~-~~~~~--d----~e~l~~~i~~--~~~tklV~i~~s~gyp  189 (427)
T 3hvy_A          121 SICGMPYDTLHDII-GMDDS-KKVGSLREYGVKYKMVDL-KDGKV--D----INTVKEELKK--DDSIKLIHIQRSTGYG  189 (427)
T ss_dssp             ECSSSCCGGGHHHH-TCCTT-CCSCCTGGGTCEEEECCC-BTTBC--C----HHHHHHHHHH--CTTEEEEEEESSCCSS
T ss_pred             EeCCCCchhHHHHh-ccccc-hhhhHHHHcCCEEEEecC-CCCCc--C----HHHHHHHhhC--CCCCEEEEEECCCCCC
Confidence            888 7777653111 00000 000000012333333322 11111  2    5788888863  14688999999    7


Q ss_pred             CCCCCeeeCCchhHHHHHHHHHH--hCcEEEEcCcccCccCCCCCCccccccCCCccee--eecccccCc--cceEEEEe
Q 011777          261 QGVGGAVELAPGYLKLVYDIVRK--AGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGNG--LPLGAVVT  334 (477)
Q Consensus       261 ~~~~G~~~~~~~~l~~l~~l~~~--~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G--~pig~v~~  334 (477)
                      +++.|.+.+    +++|.++|++  ||+++|+||+|..+.... ...   ..+  .|++  |++|.++++  ...|++++
T Consensus       190 ~nptg~v~d----l~~i~~ia~~~~~g~~livD~a~~~~~~~~-~p~---~~g--aDiv~~S~sK~lgg~g~~~GG~i~~  259 (427)
T 3hvy_A          190 WRKSLRIAE----IAEIIKSIREVNENVIVFVDNCYGEFVEEK-EPT---DVG--ADIIAGSLIKNIGGGIATTGGYIAG  259 (427)
T ss_dssp             SSCCCCHHH----HHHHHHHHHHHCSSSEEEEECTTCTTTSSS-CGG---GGT--CSEEEEETTSGGGTTTCCSCEEEEE
T ss_pred             CCccccHHH----HHHHHHHHHHhCCCCEEEEECCccccccCC-CCc---ccC--CeEEEECCcccccccccceEEEEEE
Confidence            777775554    9999999999  899999999987443222 111   123  3555  688999974  45689999


Q ss_pred             CHHHHHhhcccccc----cCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc-----c
Q 011777          335 TPEIANVMAQKIQF----NTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGR-----G  405 (477)
Q Consensus       335 ~~~~~~~~~~~~~~----~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-----g  405 (477)
                      ++++++.+......    .+.+.++..+..++..++.+  +...++..++..++.+.|+++    +... .++.     .
T Consensus       260 ~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~V-~p~~~~~~~~  332 (427)
T 3hvy_A          260 KEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVFCARIMELA----GFDV-LPKYNDKRTD  332 (427)
T ss_dssp             CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEE-ESCTTSCCSS
T ss_pred             CHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHhC----CCee-cCCCCCCCce
Confidence            99999888653211    11112111133333344322  345666777777777777664    3211 1122     2


Q ss_pred             eeEEEEEeeCCCCCCccHHHHHHHHHHHHHc
Q 011777          406 LMVGMELVTDRKEKTPAKAETAVLFEKLREL  436 (477)
Q Consensus       406 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~  436 (477)
                      +++.+.+.        +.....++++.|...
T Consensus       333 li~~~~l~--------~~~~~~~f~~~l~~~  355 (427)
T 3hvy_A          333 IIQAIKFN--------DEKKLIDFIKGIQTA  355 (427)
T ss_dssp             SEEEEECS--------SHHHHHHHHHHHHHT
T ss_pred             EEEEEeCC--------CHHHHHHHHHHhccc
Confidence            36666662        234566788888765

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.62  E-value=2.2e-14  Score=154.06  Aligned_cols=314  Identities=11%  Similarity=-0.007  Sum_probs=175.5

Q ss_pred             CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCC
Q 011777          136 LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGE  215 (477)
Q Consensus       136 ~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~  215 (477)
                      ......++.+.++++++.+ ..++++||+++||.+++....  .+++.||+.+++|+....+.+...+            
T Consensus       171 ~~~~i~e~e~~lA~~~gae-~~i~v~nGtt~an~~ai~al~--~pGD~VLv~~~~H~S~~~~~~~l~G------------  235 (730)
T 1c4k_A          171 HEGPAVAAEKHAARVYNAD-KTYFVLGGSSNANNTVTSALV--SNGDLVLFDRNNHKSVYNSALAMAG------------  235 (730)
T ss_dssp             TBTHHHHHHHHHHHHTTCS-EEEEESSHHHHHHHHHHHHHC--CTTCEEEEETTCCHHHHHHHTTTTC------------
T ss_pred             ChHHHHHHHHHHHHHHCCC-cEEEECCHHHHHHHHHHHHhc--CCCCEEEEcCCchHHHHHHHHHHCC------------
Confidence            3456789999999999764 346666766799999988653  3567888888887655443122222            


Q ss_pred             eeeecCCCCcCCCCC----CCHHHH-HHHHHHHHhcc------CCCC-eeEEEecccCCCCCeeeCCchhHHHHHHHHHH
Q 011777          216 IHHVVNPDPYHGSFG----SDAARY-AQDLQDHIDFG------TSGK-VAGFIAETIQGVGGAVELAPGYLKLVYDIVRK  283 (477)
Q Consensus       216 ~~~~~~~~~~~~~~~----~~~~~~-~~~le~~i~~~------~~~~-~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~  283 (477)
                      ...+..+... ..++    .|.... .+.|+++++..      .... ..+++++|+  ..|.+.+    +++|.++|++
T Consensus       236 a~~v~v~~~~-~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn--~~G~v~d----l~~I~~la~~  308 (730)
T 1c4k_A          236 GRPVYLQTNR-NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT--YDGTIYN----AHEVVKRIGH  308 (730)
T ss_dssp             CEEEEECEEE-CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBC--TTSEEEC----HHHHHHHHGG
T ss_pred             CEEEEEeCCc-cccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCC--CCCeecC----HHHHHHHHHH
Confidence            1111111000 0111    011000 12337777621      1011 234555553  4687776    9999999999


Q ss_pred             hCcEEEEcCcccC-ccCCCC----CCccccccCCC-cc-ee--eecccccCccce-EEEEeCHHHH---------Hhhcc
Q 011777          284 AGGVCIADEVQTG-FGRTGS----HYWGFETQGVI-PD-IV--TMAKGIGNGLPL-GAVVTTPEIA---------NVMAQ  344 (477)
Q Consensus       284 ~gillI~DEv~~g-fgr~G~----~~~~~~~~gv~-pD-iv--t~sK~lg~G~pi-g~v~~~~~~~---------~~~~~  344 (477)
                      ||+++|+||+|.+ ++..+.    .....+.++.. ++ ++  +++|++++ ++. |+++.+++..         ..+..
T Consensus       309 ~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g-~~~gg~I~v~~~~l~g~~~~i~~~~~~~  387 (730)
T 1c4k_A          309 LCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAG-FSQTSQIHKKDSHIKGQLRYCDHKHFNN  387 (730)
T ss_dssp             GBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSC-CTTCEEEEEECGGGTTSTTCCCHHHHHH
T ss_pred             cCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCC-CCCEEEEEecchhhcCcccccCHHHHHH
Confidence            9999999999863 222110    01111123432 22 44  56799764 443 5554443321         11111


Q ss_pred             c-ccccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHH-HHHhCCCcee-e-----------------
Q 011777          345 K-IQFNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRT-LQERHDIIGD-V-----------------  401 (477)
Q Consensus       345 ~-~~~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~~-v-----------------  401 (477)
                      . ....+.+.++..+++..++++.+..   +++.++..++.++++++|++ +. ....... .                 
T Consensus       388 ~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~-g~~v~~p~~~~~~~~~~~~~~~~~~~  466 (730)
T 1c4k_A          388 SFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGS-MFRPFVPPVVNGKKWEDGDTEDMANN  466 (730)
T ss_dssp             HHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTC-SSEESSCSEETTEEGGGSCHHHHTTC
T ss_pred             HHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCC-CeEEcccccccccccccccccccccc
Confidence            1 1122344566777776677776654   45677888888888888876 21 1110000 0                 


Q ss_pred             ---------------ec--cce-eE---EEEEeeCC----CC-CCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCC
Q 011777          402 ---------------RG--RGL-MV---GMELVTDR----KE-KTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPP  455 (477)
Q Consensus       402 ---------------~g--~g~-~~---~i~~~~~~----~~-~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~  455 (477)
                                     .+  .+. ++   -+.+..+.    .. ....+.....+.+.|+++||.+...+  .+.+|++++
T Consensus       467 ~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~--~~~ir~~~s  544 (730)
T 1c4k_A          467 IDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSD--LNSILFLMT  544 (730)
T ss_dssp             GGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEEC--SSEEEEECC
T ss_pred             chhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEECC--CCeEEEEeC
Confidence                           00  111 11   01222110    00 00011224678889999999987654  578999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHh
Q 011777          456 MCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       456 ~~~t~e~i~~~l~~l~~~l~  475 (477)
                      ..+|+++++.++++|.++.+
T Consensus       545 ~g~t~e~i~~Ll~aL~~i~~  564 (730)
T 1c4k_A          545 PAETPAKMNNLITQLLQLQR  564 (730)
T ss_dssp             TTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999988764

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.59  E-value=1.4e-13  Score=149.05  Aligned_cols=310  Identities=14%  Similarity=0.068  Sum_probs=179.1

Q ss_pred             hHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCee
Q 011777          138 HAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIH  217 (477)
Q Consensus       138 ~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~  217 (477)
                      ....++.+.+++.++.+ +.++++||+++||.+++....  .+++.|++.+++|+....+.... +            ..
T Consensus       205 g~v~~~ee~la~l~G~d-~~i~~~~Gtt~a~~~~i~al~--~~GD~Vlv~~~~h~s~~~~~~~~-G------------~~  268 (755)
T 2vyc_A          205 GAFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACM--TDNDVVVVDRNCHKSIEQGLMLT-G------------AK  268 (755)
T ss_dssp             HHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHHC--CTTCEEEEESSCCHHHHHHHHHH-C------------CE
T ss_pred             cHHHHHHHHHHHHhCCC-ceEEECCcHHHHHHHHHHHhc--CCCCEEEECCCchHHHHHHHHHc-C------------CE
Confidence            34667788888887653 456777777899999988653  36678999888876654442222 1            11


Q ss_pred             eecCCCCcCCCCC----CC-HHHHHHHHHHHHhccC------CCCe-eEEEecccCCCCCeeeCCchhHHHHHHHHHHhC
Q 011777          218 HVVNPDPYHGSFG----SD-AARYAQDLQDHIDFGT------SGKV-AGFIAETIQGVGGAVELAPGYLKLVYDIVRKAG  285 (477)
Q Consensus       218 ~~~~~~~~~~~~~----~~-~~~~~~~le~~i~~~~------~~~~-a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g  285 (477)
                      .+.++... ..++    .+ .....++|+++++...      ..++ .+++++|  +..|.+.+    +++|.++|++||
T Consensus       269 ~v~v~~~~-~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p--n~~G~v~d----l~~I~~ia~~~~  341 (755)
T 2vyc_A          269 PVYMVPSR-NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC--TYDGVCYN----AKEAQDLLEKTS  341 (755)
T ss_dssp             EEEECCCB-CTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS--CTTSEEEC----HHHHHHHHTTTC
T ss_pred             EEEEeCCC-CccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC--CCCceecC----HHHHHHHHHHcC
Confidence            11111110 0011    00 0001578888886311      1112 4566666  35687776    999999999999


Q ss_pred             cEEEEcCcccCccCCCCC---CccccccC--CC---cc---eeeecccccCccc-eEEEEeCHH--HH--Hhhccc-ccc
Q 011777          286 GVCIADEVQTGFGRTGSH---YWGFETQG--VI---PD---IVTMAKGIGNGLP-LGAVVTTPE--IA--NVMAQK-IQF  348 (477)
Q Consensus       286 illI~DEv~~gfgr~G~~---~~~~~~~g--v~---pD---ivt~sK~lg~G~p-ig~v~~~~~--~~--~~~~~~-~~~  348 (477)
                      +++|+||+|.+.-..+..   ...+  .+  ..   +.   +.+++|+++| ++ .|+++++++  ..  ..+... ...
T Consensus       342 ~~livDeA~~~~~~~~~~~~~~~~~--~g~~aD~~~~~~iv~~S~hK~L~g-~~~g~~i~~~~~~~~i~~~~~~~~~~~~  418 (755)
T 2vyc_A          342 DRLHFDEAWYGYARFNPIYADHYAM--RGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREGRGAINFSRFNQAYMMH  418 (755)
T ss_dssp             SEEEEECTTCTTGGGCGGGTTSSSS--CSCCCCCSSBEEEEEEETTTSSSC-CTTCEEEEEECCBTCCCHHHHHHHHHHT
T ss_pred             CEEEEECcCchhcccCcccCCcchh--cCCcCCccCCCeEEEECccccccC-cCCeeeeeecCcccccCHHHHHHHHHHh
Confidence            999999999743111101   1111  22  11   11   2357899764 33 566766543  11  112111 122


Q ss_pred             cCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHh--------CCCc--eeeec------------
Q 011777          349 NTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQER--------HDII--GDVRG------------  403 (477)
Q Consensus       349 ~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~--------~~~~--~~v~g------------  403 (477)
                      .+.+.|.+.+++..++++.+..   +++.++..++.++++++|+++..+        ....  ..+.+            
T Consensus       419 ~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (755)
T 2vyc_A          419 ATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADA  498 (755)
T ss_dssp             SCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccc
Confidence            3345677777777788887754   357888999999999999887431        1000  00100            


Q ss_pred             ---------------------------cc------eeEEEEEeeCCCCC--CccHHHHHHHHHHHHHcCceeeccCCCCC
Q 011777          404 ---------------------------RG------LMVGMELVTDRKEK--TPAKAETAVLFEKLRELGVLVGKGGLHGN  448 (477)
Q Consensus       404 ---------------------------~g------~~~~i~~~~~~~~~--~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~  448 (477)
                                                 .|      ..+.+.......+.  ...+.....+.+.|.++||.+...+  .+
T Consensus       499 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~~--~~  576 (755)
T 2vyc_A          499 PTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTT--DF  576 (755)
T ss_dssp             CHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEEC--SS
T ss_pred             cchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeecC--CC
Confidence                                       11      11122221000000  0001123567788888999887653  57


Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          449 VFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       449 ~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      .+|+.++...|+++++.++++|.++.+
T Consensus       577 ~v~~~~~~g~t~~~~~~l~~al~~~~~  603 (755)
T 2vyc_A          577 QIMFLFSMGVTRGKWGTLVNTLCSFKR  603 (755)
T ss_dssp             EEEEECCTTCCTTTTHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            899999999999999999999987753

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.39  E-value=3.4e-11  Score=128.33  Aligned_cols=312  Identities=12%  Similarity=0.095  Sum_probs=177.4

Q ss_pred             ChHHHHHHHHHHhhCCCCCCEEEEeCCh-HHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCC
Q 011777          137 HHAIADFAEALASKMPGNLKVVYFVNSG-TEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGE  215 (477)
Q Consensus       137 ~~~~~~l~~~La~~~~~~~~~v~~~~sG-seA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~  215 (477)
                      .....++.++++++++.  +..+|+.+| +.||.+++....  .+++.||+.+++|.....+....+..+.+....    
T Consensus       194 ~g~i~eaE~~lA~~fGa--~~a~~v~nGts~An~~ai~al~--~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~----  265 (715)
T 3n75_A          194 SGPHKEAEQYIARVFNA--DRSYMVTNGTSTANKIVGMYSA--PAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPT----  265 (715)
T ss_dssp             BTHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHHC--CTTCEEEEESSCCHHHHHHHHHSCCEEEEECCC----
T ss_pred             cHHHHHHHHHHHHHhCC--CCceEECcHHHHHHHHHHHHhC--CCCCEEEECCCccHHHHHHHHHcCCEEEEEecc----
Confidence            45578999999999965  555555555 699988887553  367788888877765544432222211111000    


Q ss_pred             eeeecCCCCcCCCCCCCHHH-HHHHHHHHHhccCCCC--eeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcC
Q 011777          216 IHHVVNPDPYHGSFGSDAAR-YAQDLQDHIDFGTSGK--VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADE  292 (477)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~-~~~~le~~i~~~~~~~--~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  292 (477)
                            .+.+....+.+... ..++|+++++.....+  .++|+++|  +..|.+.+    +++|.++|++++  +|+||
T Consensus       266 ------~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p--n~~G~v~d----l~~I~ela~~~~--livDE  331 (715)
T 3n75_A          266 ------RNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS--TYDGLLYN----TDFIKKTLDVKS--IHFDS  331 (715)
T ss_dssp             ------BCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS--CTTSEEEC----HHHHHHHCCCSE--EEEEC
T ss_pred             ------ccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC--CCCCccCC----HHHHHHHhCcCc--EEEcc
Confidence                  00010000000000 1588998887421111  14666677  56787777    899999998774  79999


Q ss_pred             cccCc-cCCCC-C-CccccccCCCccee-----eecccccCccceEEEEeCHHHH-Hhhcc-cccccCCCCcHHHHHHHH
Q 011777          293 VQTGF-GRTGS-H-YWGFETQGVIPDIV-----TMAKGIGNGLPLGAVVTTPEIA-NVMAQ-KIQFNTFGGNPVCSAGGL  362 (477)
Q Consensus       293 v~~gf-gr~G~-~-~~~~~~~gv~pDiv-----t~sK~lg~G~pig~v~~~~~~~-~~~~~-~~~~~t~~~~~~~~aaa~  362 (477)
                      +|.+. ...+. . ..+.. .+..+|++     +++|++++--.-|++.++.++. +.+.. .....|.+.+++.+++..
T Consensus       332 AH~~~~~f~~~~~~~~al~-~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~Asld  410 (715)
T 3n75_A          332 AWVPYTNFSPIYEGKCGMS-GGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTE  410 (715)
T ss_dssp             TTCTTGGGSGGGTTSSTTS-SSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHH
T ss_pred             ccccccccCCccccccccc-cCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHH
Confidence            99743 12110 0 11111 12225643     5789987511237777765421 11211 122345567888888888


Q ss_pred             HHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCC-----ce--eeec-------------------cce-eE---E
Q 011777          363 AVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDI-----IG--DVRG-------------------RGL-MV---G  409 (477)
Q Consensus       363 a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~-----~~--~v~g-------------------~g~-~~---~  409 (477)
                      ++++.++.   +++.+++.++.++++++|+++....+.     ..  .+.+                   .+. ++   -
T Consensus       411 aA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~K  490 (715)
T 3n75_A          411 TAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIK  490 (715)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTE
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeE
Confidence            99988863   468899999999999999988542110     00  0000                   000 00   0


Q ss_pred             EEEeeCCCC--C--CccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          410 MELVTDRKE--K--TPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       410 i~~~~~~~~--~--~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      +.+......  .  ...+.....+.+.|.++||.+....  .+.+-+..+...|+++++.++++|.+.
T Consensus       491 l~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d--~~~vl~l~s~g~~~~~~~~L~~aL~~~  556 (715)
T 3n75_A          491 VTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTG--PYNLLFLFSIGIDKTKALSLLRALTDF  556 (715)
T ss_dssp             EEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEE--TTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecC--CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            111111000  0  0001224467778888999987654  455667778888999999999998765

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.37  E-value=7.2e-11  Score=117.54  Aligned_cols=291  Identities=12%  Similarity=0.036  Sum_probs=170.6

Q ss_pred             CEEEEeCChHHHHHHHHHHHHhc--cCCceEEEEccCccCCcccccccccC-CCCCCCCCCCCeeeecCCCCcCCCCCCC
Q 011777          156 KVVYFVNSGTEANELAMLMARLS--TGNLGMIALRNAYHGGSSGTIGLTAL-NTWKYPIPQGEIHHVVNPDPYHGSFGSD  232 (477)
Q Consensus       156 ~~v~~~~sGseA~~~Al~~ar~~--~~~~~ii~~~~~yhG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (477)
                      ...|++|++|-++.+++..+...  .+.++||+.+ .-|-+...++.+.+. +.|..+..        .++    .++-|
T Consensus       135 ~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpR-n~HKSv~kAliL~Gl~Pv~V~p~~--------d~~----~~~id  201 (501)
T 3hl2_A          135 ANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPR-IDQKSCFKSMITAGFEPVVIENVL--------EGD----ELRTD  201 (501)
T ss_dssp             CEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEEC-CCCHHHHHHHHHTTCEEEEECEEE--------ETT----EEEEC
T ss_pred             CcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEec-chHHHHHHHHHHcCCeEEEEeeee--------ccc----ccCCC
Confidence            46888888887777777655432  1346777744 455554544444432 11111100        000    11112


Q ss_pred             HHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCC
Q 011777          233 AARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV  312 (477)
Q Consensus       233 ~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv  312 (477)
                          +++++++|+....+.+++|+..|....++...+    +++|.++|++||+++|+||+|.+.-... ..+..+.+..
T Consensus       202 ----~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~~-~~lp~sA~~~  272 (501)
T 3hl2_A          202 ----LKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSKC-MHLIQQGARV  272 (501)
T ss_dssp             ----HHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHHH-HHHHHHHHHH
T ss_pred             ----HHHHHHHHHhcCCCcEEEEEecCCCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhhh-hhhHHHHHhc
Confidence                588999987543467778877765443444444    9999999999999999999986432111 0000111222


Q ss_pred             -Ccceeeec--ccccCccce-EEEE-e-CHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHH
Q 011777          313 -IPDIVTMA--KGIGNGLPL-GAVV-T-TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSH  383 (477)
Q Consensus       313 -~pDivt~s--K~lg~G~pi-g~v~-~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~  383 (477)
                       ..|+++.|  |.+-.  |+ |+++ . ++++.+.+.. .+.++.++.|..  ..+.++..+-.   .+++++..++.++
T Consensus       273 GrAD~vVqS~HK~llv--pIGG~ii~~~d~e~l~~~~~-~yPGr~S~Spsl--dl~~tLL~lGr~Gy~~ll~e~~ela~~  347 (501)
T 3hl2_A          273 GRIDAFVQSLDKNFMV--PVGGAIIAGFNDSFIQEISK-MYPGRASASPSL--DVLITLLSLGSNGYKKLLKERKEMFSY  347 (501)
T ss_dssp             SCCCEEEEEHHHHHCC--CSSCEEEEESCHHHHHHHHH-TSCSCBCSHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEeccccccee--ecCceEEEeCCHHHHHHHHH-hCCCCCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             47888877  66532  33 3343 3 5667666543 233444554433  22233333322   5678888889999


Q ss_pred             HHHHHHHHHHhCC-CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCce----eecc-------------CC
Q 011777          384 LLGRLRTLQERHD-IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVL----VGKG-------------GL  445 (477)
Q Consensus       384 l~~~L~~l~~~~~-~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~----v~~~-------------~~  445 (477)
                      |+++|+++...++ .+...+....-+++.+.....   ........+...|..++|-    +.++             |.
T Consensus       348 L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~---~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~  424 (501)
T 3hl2_A          348 LSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDE---HRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMS  424 (501)
T ss_dssp             HHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCT---TTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTT
T ss_pred             HHHHHHHHHHhcChhhcCCCCCceeEEEecccccc---cccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCccc
Confidence            9999999988775 333444344444565533211   1112345677788887663    2222             11


Q ss_pred             -----CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          446 -----HGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       446 -----~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                           ...++-+.....++++|||.++++|++++.+
T Consensus       425 h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~  460 (501)
T 3hl2_A          425 HTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKA  460 (501)
T ss_dssp             TSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence                 1247888888889999999999999999864

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.30  E-value=1.6e-10  Score=116.39  Aligned_cols=308  Identities=10%  Similarity=-0.015  Sum_probs=166.9

Q ss_pred             HHHHHHHHhhCCCC-CCEEEEeCChH-HHHHHHHHHHHhcc-CCceEEEEccCccCCcccccccccCCCCCCCCCCCCee
Q 011777          141 ADFAEALASKMPGN-LKVVYFVNSGT-EANELAMLMARLST-GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIH  217 (477)
Q Consensus       141 ~~l~~~La~~~~~~-~~~v~~~~sGs-eA~~~Al~~ar~~~-~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~  217 (477)
                      ..+..++.++++.+ ....+++|++| .++..++..+|... +.+.||+.+. -|-+...++.+.+......       .
T Consensus       101 ~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~-aHkSv~kAl~l~Gl~p~~v-------~  172 (450)
T 3bc8_A          101 NSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRI-DQKSCFKSMVTAGFEPVVI-------E  172 (450)
T ss_dssp             HHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECC-CCHHHHHHHHHTTCEEEEE-------C
T ss_pred             HHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECC-cHHHHHHHHHHcCCeeEEE-------E
Confidence            44555555554322 24568999998 66666666677532 2456666655 7777666666554321110       0


Q ss_pred             eecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCc
Q 011777          218 HVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGF  297 (477)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gf  297 (477)
                        +.++......+      .+.|+++|+....+.+++|+..|....+|.+.+    +++|.++|++||+++++||+|.+.
T Consensus       173 --~~~~~~~~~id------~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~  240 (450)
T 3bc8_A          173 --NVLEGDELRTD------LKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQ  240 (450)
T ss_dssp             --CEEETTEEECC------HHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTT
T ss_pred             --eeecCccCCcC------HHHHHHHHHhcCCCCEEEEEEECCcCCCceecC----HHHHHHHHHHCCCeEEEECCCchh
Confidence              00000011122      588999997543346788888886655555556    999999999999999999998753


Q ss_pred             cCCCCCCccccccCC-Ccceeeec--ccccCccceEEEEe-CHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch---
Q 011777          298 GRTGSHYWGFETQGV-IPDIVTMA--KGIGNGLPLGAVVT-TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK---  370 (477)
Q Consensus       298 gr~G~~~~~~~~~gv-~pDivt~s--K~lg~G~pig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~---  370 (477)
                      -+.. ..+.-+.... ..|++++|  |.+.....-+.+.. +++..+.+... +.++.+.+|. . ....++..+..   
T Consensus       241 ~~~~-~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~-~~g~~s~Sps-L-~l~~~l~~~G~~g~  316 (450)
T 3bc8_A          241 SSKC-MHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKM-YPGRASASPS-L-DVLITLLSLGCSGY  316 (450)
T ss_dssp             CHHH-HHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHH-SCSCBCSHHH-H-HHHHHHHHHHHHHH
T ss_pred             hhhh-HhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHH-hhcCCcccHH-H-HHHHHHHHHHHHHH
Confidence            2111 0000011111 46888776  87775455577765 55555554332 1122223332 1 12222222222   


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCC-ceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCc---eee-----
Q 011777          371 ERRQAHCADVGSHLLGRLRTLQERHDI-IGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGV---LVG-----  441 (477)
Q Consensus       371 ~~~~~~~~~~~~~l~~~L~~l~~~~~~-~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv---~v~-----  441 (477)
                      ++++++..++.++++++|+++..+++. +......+.-..+.+..-. ..  ......++.-.+...|+   -+.     
T Consensus       317 ~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~-~~--~~~D~tkl~i~~~~~g~sG~~v~~~~~~  393 (450)
T 3bc8_A          317 RKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTID-GH--HDKAVTQLGSMLFTRQVSGARAVPLGNV  393 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTS-SS--SSCHHHHHHHHHHHTTCCSCEEECSCCE
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeeccccc-cc--ccCCCceeEEEecCCCCccceeeecccc
Confidence            234445577788999999988766652 2121111111122221100 00  01122344445555542   111     


Q ss_pred             --------c--c----CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          442 --------K--G----GLHGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       442 --------~--~----~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                              .  +    -....++-+..+...+++|+++++++|+++++
T Consensus       394 ~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~  441 (450)
T 3bc8_A          394 QTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLN  441 (450)
T ss_dssp             EEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence                    0  0    11235677777888999999999999998764

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=98.71  E-value=5.6e-07  Score=89.38  Aligned_cols=327  Identities=14%  Similarity=0.064  Sum_probs=166.0

Q ss_pred             CCHHHHHHHHHHHhh-cc--ccccccC--C---hHHHHHHH-HHHhhCCCCCCEE---EEeCChHHHHHHHHHHHHhccC
Q 011777          113 CHPDVLNAIFEQSKL-LQ--HATTIYL--H---HAIADFAE-ALASKMPGNLKVV---YFVNSGTEANELAMLMARLSTG  180 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~-~~--~~~~~~~--~---~~~~~l~~-~La~~~~~~~~~v---~~~~sGseA~~~Al~~ar~~~~  180 (477)
                      ..|.|.+|+-..+.+ +.  +...+|.  .   +..+.|+. +..++++.+....   +=..||+.||.++......  +
T Consensus        66 ~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~--P  143 (490)
T 3ou5_A           66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQ--P  143 (490)
T ss_dssp             CCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC---
T ss_pred             CCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcC--C
Confidence            578888887554432 11  1111111  1   22344443 4455666554311   2345999999988875543  6


Q ss_pred             CceEEEEccCccCCcccc-cccccCCCCCCCCCCCCeeeecCCCC-cCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEec
Q 011777          181 NLGMIALRNAYHGGSSGT-IGLTALNTWKYPIPQGEIHHVVNPDP-YHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAE  258 (477)
Q Consensus       181 ~~~ii~~~~~yhG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~e  258 (477)
                      +++|+.++-..-|+.... .....    +.......+..++++.. .....+      .+.++++...   .+++.||+-
T Consensus       144 GD~ilg~~l~~GGHltHg~~~~~~----~v~~sg~~~~~~~Y~vd~~t~~ID------yd~~~~~A~~---~kPklIi~G  210 (490)
T 3ou5_A          144 HDRIMGLDLPDGGHLTHGYMSDVK----RISATSIFFESMPYKLNPKTGLID------YNQLALTARL---FRPRLIIAG  210 (490)
T ss_dssp             CCCEECBC--------------------------------CBCEETTTTEEC------HHHHHHHHHH---HCCSEEEEC
T ss_pred             CCEEEecccCCCCcccccccCCCc----ccccccccccccccccCCCCCccc------HHHHHHHHhh---cCCCeEEEC
Confidence            778887654432221110 00000    00000000111111100 001111      4777777663   356778775


Q ss_pred             ccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeC
Q 011777          259 TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTT  335 (477)
Q Consensus       259 pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~  335 (477)
                      ...      -+-+-.+++++++|++.|++|++|-.+. |+--.|...-.++    ..|+||.+  |.|.| .|-|.++++
T Consensus       211 ~Sa------Y~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~----~ADvVTtTTHKTLrG-PrGG~Il~~  279 (490)
T 3ou5_A          211 TSA------YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIVTTTTHKTLRG-ARSGLIFYR  279 (490)
T ss_dssp             CSS------CCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG----TCSEEEEESSSTTCS-CSCEEEEEE
T ss_pred             Ccc------CccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccc----cceEEeccccccccC-CCceEEEec
Confidence            422      2222337999999999999999998854 4432331111122    25888765  99875 355888876


Q ss_pred             H---------------HHHHhhcccccccCCCCcHHHHHHHHHH-HHh-hch--hhHHHHHHHHHHHHHHHHHHHHHhCC
Q 011777          336 P---------------EIANVMAQKIQFNTFGGNPVCSAGGLAV-LRV-IDK--ERRQAHCADVGSHLLGRLRTLQERHD  396 (477)
Q Consensus       336 ~---------------~~~~~~~~~~~~~t~~~~~~~~aaa~a~-l~~-l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~  396 (477)
                      +               ++.+.+......+..+++.+-..|+.++ +.. +..  .+..+++.++.+.|.+.|.+.  .+.
T Consensus       280 ~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~--G~~  357 (490)
T 3ou5_A          280 KGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER--GYS  357 (490)
T ss_dssp             CSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TCE
T ss_pred             cccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC--CCe
Confidence            5               3444444433445555554444444433 433 222  346677777777787777664  233


Q ss_pred             CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-------CCCCEEEEeCCCC----CcHHHHHH
Q 011777          397 IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-------LHGNVFRIKPPMC----FTKDDADF  465 (477)
Q Consensus       397 ~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~iRi~p~~~----~t~e~i~~  465 (477)
                      ++..-. ...++.+++....       .......+.|.+.||.+....       ...+-|||..|..    ..++|+++
T Consensus       358 vvsGgT-dnHlvLvDl~~~g-------~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~  429 (490)
T 3ou5_A          358 LVSGGT-DNHLVLVDLRPKG-------LDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRR  429 (490)
T ss_dssp             EGGGSC-SSSEEEEECGGGT-------CCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHH
T ss_pred             eecCCC-CceEEEEeccccC-------CCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHH
Confidence            332111 2345566664211       113445566777899886421       1234689976654    46788988


Q ss_pred             HHHHHHHHHh
Q 011777          466 LVDALDYSMS  475 (477)
Q Consensus       466 ~l~~l~~~l~  475 (477)
                      +.+.|.+++.
T Consensus       430 IA~~I~~~l~  439 (490)
T 3ou5_A          430 VVDFIDEGVN  439 (490)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888887663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	477
d1sffa_	425	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	1e-94
d2byla1	404	c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu	2e-88
d1vefa1	387	c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a	9e-85
d1z7da1	404	c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla	9e-84
d2gsaa_	427	c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase	4e-73
d1zoda1	431	c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P	7e-72
d1ohwa_	461	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	8e-58
d1s0aa_	429	c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona	4e-56
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	3e-17
d1v72a1	345	c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps	5e-17
d1ax4a_	465	c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas	1e-16
d1m6sa_	343	c.67.1.1 (A:) Low-specificity threonine aldolase {	5e-12
d1svva_	340	c.67.1.1 (A:) Low-specificity threonine aldolase {	6e-09
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	1e-05
d1pmma_	450	c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {	1e-05
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	1e-04
d1c7ga_	456	c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi	7e-04

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

 Score =  290 bits (744), Expect = 1e-94
 Identities = 121/425 (28%), Positives = 191/425 (44%), Gaps = 6/425 (1%)

Query: 56  SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHP 115
           S  ++ Q+R Q +   +   +  P+     +   ++D  GR YLD   GI  ++ GH HP
Sbjct: 2   SNKELMQRRSQAIPRGVGQIH--PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHP 59

Query: 116 DVLNAIFEQSKLLQHAT-TIYLHHAIADFAEALASKMPGN-LKVVYFVNSGTEANELAML 173
            V+ A+  Q K L H    +  +    +  E +  K+PG+  K    V +G+EA E A+ 
Sbjct: 60  KVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVK 119

Query: 174 MARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYP-IPQGEIHHVVNPDPYHGSFGSD 232
           +AR +T   G IA   AYHG +  T+ LT         +     H      P      S+
Sbjct: 120 IARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISE 179

Query: 233 AARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADE 292
               A   +   +      +A  + E +QG GG    +P +++ +  +  + G + IADE
Sbjct: 180 DDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADE 239

Query: 293 VQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFG 352
           VQ+G GRT    +  E  GV PD+ T AK I  G PL  V    E+ + +A      T+ 
Sbjct: 240 VQSGAGRT-GTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYA 298

Query: 353 GNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMEL 412
           GNP+     L VL+V ++E       D+G  L   L  + E+H  IGDVRG G M+ +EL
Sbjct: 299 GNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIEL 358

Query: 413 VTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDY 472
             D     P    TA +  + R+ G+++   G + NV RI  P+          ++ +  
Sbjct: 359 FEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQ 418

Query: 473 SMSKL 477
              + 
Sbjct: 419 CFDEA 423

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  273 bits (700), Expect = 2e-88
 Identities = 106/418 (25%), Positives = 185/418 (44%), Gaps = 23/418 (5%)

Query: 55  PSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCH 114
           P++D +F++  ++      + +  P+ +  GK  YL+D  GR+Y D  + I  V+ GHCH
Sbjct: 3   PTSDDIFEREYKYGAH---NAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCH 59

Query: 115 PDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLM 174
           P ++NA+  Q   L   +  + ++ + ++ E        N   V  +N+G EA E A  +
Sbjct: 60  PKIVNALKSQVDKLTLTSRAFYNNVLGEYEE--YITKLFNYHKVLPMNTGVEAGETACKL 117

Query: 175 ARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAA 234
           AR     +  I    A    ++G        T        +        P+   F     
Sbjct: 118 ARKWGYTVKGIQKYKAKIVFAAGNFW---GRTLSAISSSTDPTSYDGFGPFMPGFDIIPY 174

Query: 235 RYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQ 294
                L+  +       VA F+ E IQG  G V   PGYL  V ++  +   + IADE+Q
Sbjct: 175 NDLPALERALQ---DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQ 231

Query: 295 TGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGG 353
           TG  RT   +   + + V PDIV + K +  G  P+ AV+   +I   +     F+T+GG
Sbjct: 232 TGLART-GRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGG 290

Query: 354 NPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELV 413
           NP+     +A L V+++E    +   +G  L   L  L    D++  VRG+GL+  + + 
Sbjct: 291 NPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLP--SDVVTAVRGKGLLNAIVIK 348

Query: 414 TDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALD 471
             +            +  +LR+ G+L      HG++ R  PP+   +D+    ++ ++
Sbjct: 349 ETKDWDAWK------VCLRLRDNGLLA--KPTHGDIIRFAPPLVIKEDELRESIEIIN 398

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

 Score =  263 bits (674), Expect = 9e-85
 Identities = 122/417 (29%), Positives = 194/417 (46%), Gaps = 32/417 (7%)

Query: 59  QVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVL 118
            + +  K         Y +  L IV G+   ++D  G  Y+D   G    + GH +P+V+
Sbjct: 3   ALLEAEKTLDSGV---YNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVV 59

Query: 119 NAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS 178
            A+  Q++ L             +F   L + +P  L  V+ VNSGTEANE A+  AR  
Sbjct: 60  EAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAH 119

Query: 179 TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQ 238
           TG    +A    + G + G++ +T    ++ P           P               +
Sbjct: 120 TGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIP-----------YNDVE 168

Query: 239 DLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG 298
            L+  +D     + A  I E +QG GG     P +L+   +I ++ G + I DE+QTG G
Sbjct: 169 ALKRAVD----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMG 224

Query: 299 RTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCS 358
           RTG  +  FE  G++PDI+T+AK +G G+PLG  V   E+A  M +     TFGGNP+  
Sbjct: 225 RTGKRFA-FEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAM 283

Query: 359 AGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKE 418
           A G+A +R +++ R     A++G   + +LR +      I +VRG GLMVG+EL      
Sbjct: 284 AAGVAAIRYLERTRLWERAAELGPWFMEKLRAIP--SPKIREVRGMGLMVGLELKEKA-- 339

Query: 419 KTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMS 475
                     +    +E  VL  + G    V R  PP+   K+D + +V+A+   ++
Sbjct: 340 -------APYIARLEKEHRVLALQAG--PTVIRFLPPLVIEKEDLERVVEAVRAVLA 387

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score =  262 bits (669), Expect = 9e-84
 Identities = 92/417 (22%), Positives = 167/417 (40%), Gaps = 22/417 (5%)

Query: 56  SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHP 115
           + +       ++      +Y   P+ +   K  +++D N +RY D  +   +V+ GHCHP
Sbjct: 2   TPEDYINNELKYGAH---NYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHP 58

Query: 116 DVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMA 175
           ++LNA+  Q+K L   +  +    +      L + +  +  ++    +        +   
Sbjct: 59  NILNAMINQAKNLTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRK 118

Query: 176 RLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAAR 235
                                      +  T              N  P+   F      
Sbjct: 119 WGYEVKKIPE-----NMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD 173

Query: 236 YAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT 295
             + L++ +       V  FI E IQG  G +  +  YL+ VYDI +K   + +ADEVQT
Sbjct: 174 DLEALEEELK---DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT 230

Query: 296 GFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGGN 354
           G GRT           V PD++ + K +  G  P+ AV+   +I  V+      +T+GGN
Sbjct: 231 GLGRT-GKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGN 289

Query: 355 PVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVT 414
           P+ ++  +  L V+  E+   +   +G   L  L+   +   I+ DVRG+GL+  +E   
Sbjct: 290 PLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKN 349

Query: 415 DRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALD 471
           +             +  KL+E G++     +H    R+ PP+C TK+  D   + + 
Sbjct: 350 E-------LVNVLDICLKLKENGLIT--RDVHDKTIRLTPPLCITKEQLDECTEIIV 397

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

 Score =  235 bits (599), Expect = 4e-73
 Identities = 92/435 (21%), Positives = 165/435 (37%), Gaps = 29/435 (6%)

Query: 58  DQVFQKRKQFL-------GPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSC 110
           D++F   ++ +         +      +P+     K  Y +D +G RY+D         C
Sbjct: 7   DEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAIC 66

Query: 111 GHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANEL 170
           GH HP+V+ A+      ++  T+     A+ +    + +    ++++V FVNSGTEA   
Sbjct: 67  GHAHPEVIEALKVA---MEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMA 123

Query: 171 AMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFG 230
            + + R  TG   +I     YHG +   +           +P               +  
Sbjct: 124 VLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY 183

Query: 231 SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA 290
           +D         ++      G++AG I E I G  G +    G+L+ + +I  +   + + 
Sbjct: 184 NDLEAVKALFAEN-----PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVF 238

Query: 291 DEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMA---QKIQ 347
           DEV TGF     +    E  GV PD+ T+ K IG GLP+GA     EI  ++A      Q
Sbjct: 239 DEVMTGFRIA--YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQ 296

Query: 348 FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLM 407
             T  GNP+    G+  L ++ +     +   +   L   L  + +             M
Sbjct: 297 AGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGM 356

Query: 408 VGM----ELVTDRKEKTPAKAET-AVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDD 462
            G       V + ++   +  +  +     + E G+ +               +  T++D
Sbjct: 357 FGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFE----AGFTSLAHTEED 412

Query: 463 ADFLVDALDYSMSKL 477
            D  + A    MS L
Sbjct: 413 IDATLAAARTVMSAL 427

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

 Score =  232 bits (591), Expect = 7e-72
 Identities = 130/407 (31%), Positives = 199/407 (48%), Gaps = 10/407 (2%)

Query: 79  PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH 138
           P+ I   K  +++D +GR  LD  +G ++   GHCHP++++ I E +  L H  +  L  
Sbjct: 24  PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSR 83

Query: 139 AIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGT 198
            + D A  LA+  P  L     +++G E+NE A+ MA+L TG   ++    ++HG +   
Sbjct: 84  PVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAA 143

Query: 199 IGLTALNTWKYPIPQGE-----IHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA 253
              T     K   P                 +  +   D         D ID  +SG +A
Sbjct: 144 ASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLA 203

Query: 254 GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVI 313
            FIAE I   GG +EL  GY+  +       G + I DE QTG GRT    +  +  GV 
Sbjct: 204 AFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRT-GTMFACQRDGVT 262

Query: 314 PDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQF--NTFGGNPVCSAGGLAVLRVIDKE 371
           PDI+T++K +G GLPL A+VT+  I     +       T   +P+ +A GL VL V+ ++
Sbjct: 263 PDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRD 322

Query: 372 RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFE 431
              A    +G  L   L  L ER D IGDVRGRGL++G+E+V DR+ K PA    A +  
Sbjct: 323 GLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITR 382

Query: 432 KLRELGVLVG--KGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK 476
           +   LG+ +   +    G VFRI PP+  ++D+ D  +  L  ++ +
Sbjct: 383 ECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 429

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} Length = 461

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  196 bits (497), Expect = 8e-58
 Identities = 95/473 (20%), Positives = 163/473 (34%), Gaps = 64/473 (13%)

Query: 45  FDHD-PK---PYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLD 100
           FD+D P       GP + ++ ++          H+     N  E +  YL D +G R LD
Sbjct: 1   FDYDGPLMKTEVPGPRSRELMKQLNIIQNAEAVHF---FCNYEESRGNYLVDVDGNRMLD 57

Query: 101 AFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH-----AIADFAEALASKMPGNL 155
            ++ I ++  G+ HP ++  + +   +        L        +    E+L S  P  +
Sbjct: 58  LYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGM 117

Query: 156 KVVYFVNSGTEANELAMLMARL--------------------------STGNLGMIALRN 189
             +  +  G+ +NE A     +                             +  +++   
Sbjct: 118 SQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMG 177

Query: 190 AYHGGSSGTIGLT------ALNTWKYPIPQGEIHHVVNPDPYHGSFGSD-AARYAQDLQD 242
           A+HG + G +  T       ++   +  P      +  P            AR  ++++D
Sbjct: 178 AFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVED 237

Query: 243 HIDFGTSG--KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRT 300
            I         VAG I E IQ  GG    +  + + + DI RK G   + DEVQTG G T
Sbjct: 238 LIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGST 297

Query: 301 GS-HYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSA 359
           G              D++T +K +  G         P     +      +      +   
Sbjct: 298 GKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEV 357

Query: 360 GGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERH-DIIGDVRGRGLMVGMELVTDRKE 418
                  +I +E   ++ A  G  LL  L  LQ R+   I  VRGRG     +       
Sbjct: 358 I-----NIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDT------ 406

Query: 419 KTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALD 471
             P ++    L    R  GV++  GG      R +P + F    A   ++   
Sbjct: 407 --PDESIRNKLISIARNKGVML--GGCGDKSIRFRPTLVFRDHHAHLFLNIFS 455

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

 Score =  190 bits (483), Expect = 4e-56
 Identities = 96/418 (22%), Positives = 158/418 (37%), Gaps = 30/418 (7%)

Query: 72  IFHYYQ------KPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQS 125
           I H +           +V  +   L   +GRR +D  +       G+ HP +  A+  Q 
Sbjct: 13  ILHPFTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQI 72

Query: 126 KLLQHATTIYLHHAIA-DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARL-----ST 179
             + H     + HA A +    L +  P  L+ V+  +SG+ A E+AM MA         
Sbjct: 73  DAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGE 132

Query: 180 GNLGMIALRNAYHGGSSGTIGLTALNTWKYPI-PQGEIHHVVNPDPYHGSFGSDAARYAQ 238
                +  RN YHG + G + +   +   + +       ++  P P     G    R   
Sbjct: 133 ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMV 192

Query: 239 DLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG 298
                +        A  I   +QG GG     P +LK +  I  + G + IADE+ TGFG
Sbjct: 193 GFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFG 252

Query: 299 RTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQK-----IQFNTFGG 353
           RTG  +     +     +       G  + L A +TT E+A  ++       +   TF G
Sbjct: 253 RTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMG 312

Query: 354 NPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELV 413
           NP+  A   A L +++    Q   AD+   L  +L   ++  +++ DVR  G +  +E  
Sbjct: 313 NPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARD-AEMVADVRVLGAIGVVETT 371

Query: 414 TDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALD 471
                        A L +   E GV +      G +  + PP          L  A++
Sbjct: 372 HP--------VNMAALQKFFVEQGVWIRP---FGKLIYLMPPYIILPQQLQRLTAAVN 418

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score = 81.5 bits (200), Expect = 3e-17
 Identities = 46/375 (12%), Positives = 102/375 (27%), Gaps = 57/375 (15%)

Query: 140 IADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR------LSTGNLGMIALRNAYHG 193
               AE++ +      +     + G  A ++ + +               M+A  N +  
Sbjct: 76  YYALAESVKNIF--GYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFD 133

Query: 194 GSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA 253
            + G   +         I +     V      +           + L+  I+      V 
Sbjct: 134 TTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDL--------EGLERGIEEVGPNNVP 185

Query: 254 GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQ-----TGFGRTGSHYWGFE 308
             +A       G   ++   LK +Y I +K     + D  +         +  + Y  + 
Sbjct: 186 YIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWT 245

Query: 309 TQGVIP------DIVTMAKGIGNGLPLGAVVTT---PEIANVMAQKIQFNTFGGNP---- 355
            + +        D++ M+      +P+G ++              +       G P    
Sbjct: 246 IEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGG 305

Query: 356 ---VCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMEL 412
                       L         A+      +L+     L+E   +     G    V    
Sbjct: 306 LEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDG---LEEIGVVCQQAGGHAAFVDAGK 362

Query: 413 VTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHG---------------NVFRIKPPMC 457
           +          A+ A+  E  +  G+   + G                   + R+  P  
Sbjct: 363 LLPHIPADQFPAQ-ALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRA 421

Query: 458 -FTKDDADFLVDALD 471
            +T+   DF+++A  
Sbjct: 422 TYTQTHMDFIIEAFK 436

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

 Score = 79.9 bits (195), Expect = 5e-17
 Identities = 35/361 (9%), Positives = 85/361 (23%), Gaps = 33/361 (9%)

Query: 111 GHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANEL 170
               P+V  A+ + S         Y    +    +    ++      V+ V +GT AN L
Sbjct: 13  AGASPEVAQALVKHS---SGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANAL 69

Query: 171 AMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFG 230
            +       GN+      +  +                          +    P      
Sbjct: 70  CLSAMTPPWGNIYCHPASHINN-----------DECGAPEFFSNGAKLMTVDGPAAKLDI 118

Query: 231 SDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA 290
                  ++    +       V+   A  +  +          ++ + D+ + +      
Sbjct: 119 VRLRERTREKVGDVHTTQPACVSITQATEVGSIYT-----LDEIEAIGDVCKSSSLGLHM 173

Query: 291 DEVQTGFGRTGSHYWGFETQGVI-PDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFN 349
           D  +             E       D ++        L   A+V             +  
Sbjct: 174 DGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKR 233

Query: 350 TFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVG 409
               +         +   +  +    +     +      + L+    +         ++ 
Sbjct: 234 AGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILF 293

Query: 410 MELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDA 469
             L              + + + L + G          NV R       T +D D L++ 
Sbjct: 294 CRL-------------DSAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQ 340

Query: 470 L 470
           +
Sbjct: 341 V 341

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

 Score = 80.0 bits (196), Expect = 1e-16
 Identities = 54/431 (12%), Positives = 115/431 (26%), Gaps = 55/431 (12%)

Query: 77  QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL 136
           ++   + E         +   Y+D      T +        +                Y 
Sbjct: 23  EREAALKEAGYNPFLLPSSAVYIDLLTDSGTNAMSDHQWAAM----------ITGDEAYA 72

Query: 137 HHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALR---NAYHG 193
                   +  A ++      +   + G  A  +   +        G        + +H 
Sbjct: 73  GSRNYYDLKDKAKELFN-YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHF 131

Query: 194 GSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA 253
            ++              I   +       D + G F        + L+++I    +  + 
Sbjct: 132 DTTAAHVELN-GCKAINIVTEKAFDSETYDDWKGDFD------IKKLKENIAQHGADNIV 184

Query: 254 GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGF-----GRTGSHYWGFE 308
             ++       G   ++   LK VY+I ++ G   + D  +              Y    
Sbjct: 185 AIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNAT 244

Query: 309 TQGVIPDIV------TMAKGIGNGLPLGAVVTTPEIANVM----AQKIQFNTFGGNPVCS 358
            + VI D+       TM+      L +G +V   +   +      + +    F      +
Sbjct: 245 IKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLA 304

Query: 359 AGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQE--RHDIIGDVRGRGLMVGMELVTDR 416
              +A +    +E  +          +  L          I     G  + V  + +  +
Sbjct: 305 GRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQ 364

Query: 417 KEKTPAKAETAVLFEKLRELGVLVGKGGL---------------HGNVFRIKPPM-CFTK 460
                  A+ AV+     E GV   + G                     R+      +T 
Sbjct: 365 IPGDQFPAQ-AVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTN 423

Query: 461 DDADFLVDALD 471
           D  D++ DAL 
Sbjct: 424 DHMDYIADALI 434

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

 Score = 64.8 bits (156), Expect = 5e-12
 Identities = 47/364 (12%), Positives = 97/364 (26%), Gaps = 34/364 (9%)

Query: 114 HPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAML 173
             ++  A+ +          +Y      +  E LA++  G  +   FV SGT  N+++++
Sbjct: 13  TEEMRKAMAQAEV----GDDVYGEDPTINELERLAAETFG-KEAALFVPSGTMGNQVSIM 67

Query: 174 MARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDA 233
                   + + A  + +         L+ +     P   G +                 
Sbjct: 68  AHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFP 127

Query: 234 ARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEV 293
                            + +    E      G   +    +K +  I ++ G     D  
Sbjct: 128 -----------------RTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGA 170

Query: 294 QTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGG 353
           +       S     E  G    ++              VV   +      +  +    G 
Sbjct: 171 RIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGM 230

Query: 354 NPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELV 413
                AG LA   +I   +      +   +       L+E    +     +  MV +   
Sbjct: 231 RQ---AGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRT- 286

Query: 414 TDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYS 473
                    K       E LR  GVL           R+      +++D +  ++  +  
Sbjct: 287 ------DNLKVNAHGFIEALRNSGVLANAVS--DTEIRLVTHKDVSRNDIEEALNIFEKL 338

Query: 474 MSKL 477
             K 
Sbjct: 339 FRKF 342

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} Length = 340

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

 Score = 55.3 bits (131), Expect = 6e-09
 Identities = 36/360 (10%), Positives = 85/360 (23%), Gaps = 36/360 (10%)

Query: 113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAM 172
            HP +L+ +   +  +            A  A  +   +      V+F++ GT+ N +A 
Sbjct: 12  MHPKILDLMARDN--MTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIAC 69

Query: 173 LMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSD 232
            +A      +    L +               +        G                  
Sbjct: 70  SLALRPWEAVIATQLGHIST------------HETGAIEATGHKVVTAPCPDGKLRVADI 117

Query: 233 AARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADE 292
            +   ++  +H        V   +           +     L+ +    ++ G     D 
Sbjct: 118 ESALHENRSEH-------MVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDG 170

Query: 293 VQTGFG-RTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTF 351
            +      +  +         + D+  +      G+   A++   +     A+ +     
Sbjct: 171 ARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQRG 230

Query: 352 GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERH-DIIGDVRGRGLMVGM 410
                    G+    ++         A            L+     +        L   +
Sbjct: 231 ALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLAWPSASNQLFPIL 290

Query: 411 ELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDAL 470
           E               A L        V   K G    + R+       + +    V+ L
Sbjct: 291 E-----------NTMIAELNNDFDMYTVEPLKDG--TCIMRLCTSWATEEKECHRFVEVL 337

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 45.3 bits (106), Expect = 1e-05
 Identities = 32/328 (9%), Positives = 67/328 (20%), Gaps = 25/328 (7%)

Query: 150 KMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY 209
           K  G           T  +    L A        ++    A H      +          
Sbjct: 124 KQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFV------- 176

Query: 210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVEL 269
               G    +V                   ++  I+        G     +  +      
Sbjct: 177 ----GMNMRLVETVLDGDRVYVPVEDIENAIKKEIE-------LGNRPCVLSTLTFFPPR 225

Query: 270 APGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG-FETQGVIPDIVTMAKGIGNGLP 328
               +  +  I        I +                     V   + +  K +   + 
Sbjct: 226 NSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIG 285

Query: 329 LGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGL-AVLRVIDKERRQAHCADVGSHLLGR 387
            G V +T                   PV +       +   +      +  +    L   
Sbjct: 286 GGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDEL 345

Query: 388 LRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAV----LFEKLRELGVLVGKG 443
           L  L ++           +   + + +D  E         V      +K    G      
Sbjct: 346 LNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGT 405

Query: 444 GLHGNVFRIKPPMCFTKDDADFLVDALD 471
             H +   +   +    +D    V  L+
Sbjct: 406 YTH-DYIVMNAAIGVRTEDIVNSVSKLE 432

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 46/343 (13%), Positives = 72/343 (20%), Gaps = 39/343 (11%)

Query: 159 YFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ----- 213
                 +EA  L  +  +           +     G             +    +     
Sbjct: 119 TNTIGSSEACMLGGMAMKWR-------WRKRMEAAGKPTDKPNLVCGPVQICWHKFARYW 171

Query: 214 GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGY 273
                 +   P             + + +  D  T G V      T  G     +     
Sbjct: 172 DVELREIPMRPGQLF------MDPKRMIEACDENTIG-VVPTFGVTYTGNYEFPQPLHDA 224

Query: 274 LKLVYDIVRKAGGVCIADEVQTGF---GRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLG 330
           L   +            D    GF          W F    V     +  K     L  G
Sbjct: 225 LDK-FQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCG 283

Query: 331 AVVTTPEIANVMAQKIQFNTFGGN-----------PVCSAGGLAVLRVIDKERRQAHCAD 379
            V+   E A         +  GG                         + +E        
Sbjct: 284 WVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNA 343

Query: 380 VGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVL 439
                      + +         GR       +    K+          L E+LR  G  
Sbjct: 344 SYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQ 403

Query: 440 V-----GKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL 477
           V     G       V RI     F  D A+ L++    S+  L
Sbjct: 404 VPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYL 446

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 36/350 (10%), Positives = 83/350 (23%), Gaps = 59/350 (16%)

Query: 168 NELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHG 227
           N L + + +L+  +            G S T+    L   +         +++ P     
Sbjct: 97  NSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAK-----YIIWPRIDQK 151

Query: 228 SFGSDAARYA--------------------QDLQDHIDFGTSGKVAGFIAETIQGVGGAV 267
           S    +   A                    + ++  I       +    + T        
Sbjct: 152 SC-FKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVP 210

Query: 268 ELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHY--WGFETQGVIPDIVTMAKGIGN 325
           +     L+ +  I        + +           H    G     +   + ++ K    
Sbjct: 211 D----RLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMV 266

Query: 326 GLPLGAVVTTP-EIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHL 384
            +    +          +++           +     L  L      +      ++  +L
Sbjct: 267 PVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYL 326

Query: 385 LGRLRTLQERHDI-IGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG 443
             +L+ L E H+  +       + + M L T       A  +   L   L    V   + 
Sbjct: 327 STQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQ---LGSMLFTRQVSGARA 383

Query: 444 -----------------GLHGNVF-----RIKPPMCFTKDDADFLVDALD 471
                              H + +          +     D D  +  LD
Sbjct: 384 VPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLD 433

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

 Score = 39.8 bits (92), Expect = 7e-04
 Identities = 41/356 (11%), Positives = 91/356 (25%), Gaps = 61/356 (17%)

Query: 156 KVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALN--TWKYPIPQ 213
           K +   + G  A  L      +  G      +            G T ++    +     
Sbjct: 91  KHIVPTHQGRGAENLL-SQLAIKPGQYVAGNMYFTTTRFHQEKNGATFVDIVRDEAHDAS 149

Query: 214 GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGY 273
             +    + D                L   I    +  +A         + G   ++   
Sbjct: 150 LNLPFKGDIDL-------------NKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMAN 196

Query: 274 LKLVYDIVRKAGGVCIADEVQ-----TGFGRTGSHYWGFETQGVIP------DIVTMAKG 322
           ++ V+++    G     D  +            + Y     + ++       D  TM+  
Sbjct: 197 MRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGK 256

Query: 323 IGNGLPLGAVVTTPE------IANVMAQKIQFNTFGGNPVCSAGGLAV-----LRVIDKE 371
               + +G  +   +         ++       ++GG        +A+     ++    E
Sbjct: 257 KDCLVNIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIE 316

Query: 372 RRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFE 431
            R      +G  L      + E            L          +++ PA++  A    
Sbjct: 317 HRVKQVRYLGDKLREAGVPIVEP----TGGHAVFLDARRFCPHLTQDQFPAQSLAA---S 369

Query: 432 KLRELGVLVGKGGLHG---------------NVFRIKPPMC-FTKDDADFLVDALD 471
              E GV   + G+                    R+  P   +T    D + D + 
Sbjct: 370 IYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGII 425

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	477
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	100.0
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	100.0
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	100.0
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	100.0
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	100.0
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	100.0
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	100.0
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	100.0
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	100.0
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.97
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.96
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.96
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.96
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.95
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.95
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.94
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.94
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.94
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.94
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.94
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.94
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.94
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.94
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.93
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.93
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.93
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.93
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.92
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.92
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.92
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.91
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.9
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.89
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.89
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.88
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.87
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.86
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.85
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.85
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.85
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.84
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.84
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.84
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.83
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.81
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.81
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.8
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.79
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.79
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.78
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.77
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.77
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.74
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.73
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.72
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.72
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.71
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.69
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.67
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.58
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.54
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.53
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.52
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.51
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.5
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.5
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.49
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.49
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.49
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.44
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.44
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.41
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.4
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.38
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.38
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.34
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.31
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.31
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.3
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.08
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.05
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	98.99
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	98.77
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	98.75
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	98.7

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.6e-77  Score=604.23  Aligned_cols=415  Identities=30%  Similarity=0.467  Sum_probs=360.7

Q ss_pred             CHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccc-cc
Q 011777           56 SADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT-TI  134 (477)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~-~~  134 (477)
                      ++++|+++++++++.++..  ..|+++++|+|+||||.|||+||||.+|+++++|||+||+|++|+.+|++++.+.. ..
T Consensus         2 ~~~~l~~r~~~~~~~g~~~--~~P~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~   79 (425)
T d1sffa_           2 SNKELMQRRSQAIPRGVGQ--IHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQV   79 (425)
T ss_dssp             CHHHHHHHHHHHSCTTBCC--SEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTT
T ss_pred             chHHHHHHHHHhcCCCCCC--CCCceEEEEecCEEEeCCCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCCccccc
Confidence            5789999999999866433  35899999999999999999999999999999999999999999999999977654 33


Q ss_pred             cCChHHHHHHHHHHhhCCCC-CCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCC-
Q 011777          135 YLHHAIADFAEALASKMPGN-LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP-  212 (477)
Q Consensus       135 ~~~~~~~~l~~~La~~~~~~-~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~-  212 (477)
                      +.++...+++++|.+.+|.+ .++++|++|||||++.|+|+||.+++|.+||+++++|||++.+++++++......... 
T Consensus        80 ~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~  159 (425)
T d1sffa_          80 LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMG  159 (425)
T ss_dssp             EECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSC
T ss_pred             ccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcc
Confidence            55788999999999999865 5789999999999999999999999999999999999999999999887554332221 


Q ss_pred             --CCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHh-ccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          213 --QGEIHHVVNPDPYHGSFGSDAARYAQDLQDHID-FGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       213 --~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~-~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                        +......+.|......   .........++++. ....+++++||+||+++++|+++++++||++|+++|++||++||
T Consensus       160 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI  236 (425)
T d1sffa_         160 LMPGHVYRALYPCPLHGI---SEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLI  236 (425)
T ss_dssp             CCCSSEEEECCCBGGGTB---CHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEE
T ss_pred             cccCCccccCCccccccc---cchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEE
Confidence              1222333322222111   11111122233322 33457899999999999999999999999999999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID  369 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~  369 (477)
                      +|||||||||+| .+|+++++|+.|||+|+||+++||+|+|++++++++++.+....+++||++||++|+|++++|++++
T Consensus       237 ~DEV~tG~gR~g-~~~a~~~~gv~PDi~~~gK~l~gG~P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~  315 (425)
T d1sffa_         237 ADEVQSGAGRTG-TLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFE  315 (425)
T ss_dssp             EECTTTTTTTTS-SSSGGGGTTSCCSEEEECGGGGTSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH
T ss_pred             eccccccCCCcc-hhhHHHhcCCCccceecccccCCCcceEEEEEcHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence            999999999999 8999999999999999999999999999999999999999888899999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCE
Q 011777          370 KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNV  449 (477)
Q Consensus       370 ~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~  449 (477)
                      ++++.+++.+++++++++|+++.++++.+.+++|.|+|++++|..+.....++......+.+.|+++||++.+.+..++.
T Consensus       316 ~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g~~~n~  395 (425)
T d1sffa_         316 QENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNV  395 (425)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCE
T ss_pred             HhhhhhhhhhhhhhhhhhhhhhHhhCCceEEEEccccEEEEEEeccCccCCccHHHHHHHHHHHHHCCCEEeccCCCCCE
Confidence            99999999999999999999999999999999999999999998776666677777788999999999999988777899


Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          450 FRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       450 iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +||+||+++|++|||+++++|++++++
T Consensus       396 i~~~PpL~it~~eid~~l~~l~~al~e  422 (425)
T d1sffa_         396 LRILVPLTIEDAQIRQGLEIISQCFDE  422 (425)
T ss_dssp             EEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999976

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=100.00  E-value=1.4e-74  Score=588.82  Aligned_cols=416  Identities=32%  Similarity=0.502  Sum_probs=359.6

Q ss_pred             HHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCC
Q 011777           58 DQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH  137 (477)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~  137 (477)
                      .++..+..+++......  ..|+++++|+|+||||.|||+||||.+|+++++|||+||+|++|+++|++++.|....+.+
T Consensus         5 ~~~~~~~~~~~~~~~~~--~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~   82 (431)
T d1zoda1           5 ATFWRNARHHLVRYGGT--FEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLS   82 (431)
T ss_dssp             HHHHHHHHHHCCCCSSC--CCSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTCCC
T ss_pred             HHHHHhhHHHhhccCCC--CCCCeEEEeecCEEEECCCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhcccccccccc
Confidence            45667777777542211  1489999999999999999999999999999999999999999999999998876666788


Q ss_pred             hHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCC-CCe
Q 011777          138 HAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ-GEI  216 (477)
Q Consensus       138 ~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~-~~~  216 (477)
                      +...+|+++|++..+.++++|+|++|||||+|.|+|+||.+++|.+|+.|+++|||.+.++++++....+....+. .+.
T Consensus        83 ~~~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~  162 (431)
T d1zoda1          83 RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGS  162 (431)
T ss_dssp             HHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTE
T ss_pred             HHHHHHHHHHHHhCCcccceeeecccccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCc
Confidence            9999999999999988889999999999999999999999999999999999999999999998876544333332 466


Q ss_pred             eeecCCCCcCCCCCC----CHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcC
Q 011777          217 HHVVNPDPYHGSFGS----DAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADE  292 (477)
Q Consensus       217 ~~~~~~~~~~~~~~~----~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DE  292 (477)
                      ..++.+..++.....    +....++.++..+....++++|+||+||+++++|+++++++||++|+++|++||++||+||
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DE  242 (431)
T d1zoda1         163 FAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDE  242 (431)
T ss_dssp             EEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEEC
T ss_pred             eeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEecc
Confidence            666666655444321    2223345555555545568999999999999999999999999999999999999999999


Q ss_pred             cccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcc--cccccCCCCcHHHHHHHHHHHHhhch
Q 011777          293 VQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQ--KIQFNTFGGNPVCSAGGLAVLRVIDK  370 (477)
Q Consensus       293 v~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~--~~~~~t~~~~~~~~aaa~a~l~~l~~  370 (477)
                      |+|||||+| .+|+++++|+.||++|+||+++||+|++++++++++++.+..  ..+++||++||++|+|+.++|+++++
T Consensus       243 V~tG~gRtG-~~~~~~~~gv~PDi~~~gK~l~gG~p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~  321 (431)
T d1zoda1         243 AQTGVGRTG-TMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR  321 (431)
T ss_dssp             TTTTTTTTS-SSSTHHHHTCCCSEEEECHHHHTTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHH
T ss_pred             ccccccccc-cccccccCCCCcchhccccccccccccceeeeeecchhhhhcccccccCCCCCCcchHHHHHHHHHHhhh
Confidence            999999999 899999999999999999999999999999999998877643  35789999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeec--cCCCCC
Q 011777          371 ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGK--GGLHGN  448 (477)
Q Consensus       371 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~--~~~~~~  448 (477)
                      +++.+++.++++++.+.++++..+++.+.++||.|+|+++++..+..++.+.......+.+.|+++|++...  .+..++
T Consensus       322 ~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~~~~~~~~~  401 (431)
T d1zoda1         322 DGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGG  401 (431)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCC
T ss_pred             hhhhHHHHHHHHHHhhhhhhhhhcCCCeEEEeecceEEEEEEecCCcccCccHHHHHHHHHHHHHhCcccCeeeecCCCC
Confidence            999999999999999999999999999999999999999999877666666666677889999999986432  233578


Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          449 VFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       449 ~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +|||+||+++|++|||+++++|++++++
T Consensus       402 ~i~l~Ppl~it~~eid~~~~~l~~al~~  429 (431)
T d1zoda1         402 VFRIAPPLTVSEDEIDLGLSLLGQAIER  429 (431)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999976

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-73  Score=571.01  Aligned_cols=390  Identities=27%  Similarity=0.470  Sum_probs=342.2

Q ss_pred             CCHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccc
Q 011777           55 PSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTI  134 (477)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~  134 (477)
                      |++++++++..+|.+.+   +++.|+.+++|+|+||||.|||+||||.+|+++++|||+||+|++|+++|++++.+....
T Consensus         3 ~~~~~~~~~~~~~~~~~---~~p~P~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~~~   79 (404)
T d2byla1           3 PTSDDIFEREYKYGAHN---AHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRA   79 (404)
T ss_dssp             CCHHHHHHHHHHHBCSC---CCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTT
T ss_pred             CcHHHHHHHHHHhccCC---CCCCCceEEEeecCEEEECCCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCCcccc
Confidence            78999999999997643   356689999999999999999999999999999999999999999999999997765555


Q ss_pred             cCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhcc--------CCceEEEEccCccCCcccccccccCCC
Q 011777          135 YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLST--------GNLGMIALRNAYHGGSSGTIGLTALNT  206 (477)
Q Consensus       135 ~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~--------~~~~ii~~~~~yhG~~~~~~~~~~~~~  206 (477)
                      +.++...++++.+++..  +.++++|++||+||++.|+|+||.++        ++.+++.+.++|||.+.++++.+..+.
T Consensus        80 ~~~~~~~~~~~~~~~~~--~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~  157 (404)
T d2byla1          80 FYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPT  157 (404)
T ss_dssp             EEESSHHHHHHHHHHHH--TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHH
T ss_pred             cccchHHHHHHhhhhcc--cccccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcc
Confidence            55666778888888876  34799999999999999999999764        567899999999999999999887654


Q ss_pred             CCCCCCC--CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHh
Q 011777          207 WKYPIPQ--GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKA  284 (477)
Q Consensus       207 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~  284 (477)
                      ++..+.+  .++..++.++             ++++++++.   .+++|+||+||+++++|+++++++||++|+++|++|
T Consensus       158 ~~~~~~p~~~~~~~~p~~d-------------~~~l~~~l~---~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~  221 (404)
T d2byla1         158 SYDGFGPFMPGFDIIPYND-------------LPALERALQ---DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRH  221 (404)
T ss_dssp             HHTTSCSCCTTEEEECTTC-------------HHHHHHHHT---STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHH
T ss_pred             cccCCCCCCCCeeEecccC-------------HHHHHHhcC---CCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhc
Confidence            4433222  3444443222             577888886   468999999999999999999999999999999999


Q ss_pred             CcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHH
Q 011777          285 GGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLA  363 (477)
Q Consensus       285 gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a  363 (477)
                      |++||+||||+||||+| ++|+++++|+.|||+||||+++|| +|+|++++++++++.+....+++||++||++|+|+++
T Consensus       222 g~llI~DEV~tGfgR~G-~~~a~~~~gv~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a  300 (404)
T d2byla1         222 QVLFIADEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIA  300 (404)
T ss_dssp             TCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHH
T ss_pred             CeEEEeecccccccccc-ccchhhhcCCCCCEEEECchhhCCCccceeeeechhhhhccCCCCCCcCCCcCHHHHHHHHH
Confidence            99999999999999999 899999999999999999999998 8999999999999999888899999999999999999


Q ss_pred             HHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeecc
Q 011777          364 VLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG  443 (477)
Q Consensus       364 ~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~  443 (477)
                      +|+.++++++.+++.+++++++++|+++.  .+.+.++||.|+|.++++.....      ....++.+.|+++||++.+.
T Consensus       301 ~L~~i~~~~l~~~~~~~g~~l~~~l~~l~--~~~i~~vRg~Gl~~~i~~~~~~~------~~~~~~~~~l~~~Gvl~~~~  372 (404)
T d2byla1         301 ALEVLEEENLAENADKLGIILRNELMKLP--SDVVTAVRGKGLLNAIVIKETKD------WDAWKVCLRLRDNGLLAKPT  372 (404)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHTSC--TTTEEEEEEETTEEEEEECCCSS------CCHHHHHHHHHHTTEECEEE
T ss_pred             HHHHHHhcCchhhhhHhhHHHHHHHHhhc--cccceeeeecccEEEEEEecCCc------hhHHHHHHHHHhCCeEEecC
Confidence            99999999999999999999999999984  46789999999999999864321      12456888999999999875


Q ss_pred             CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          444 GLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       444 ~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +  ++++||+||+++|++|||+++++|++++.+
T Consensus       373 ~--~~~i~l~PpL~it~~~id~~~~~l~~al~~  403 (404)
T d2byla1         373 H--GDIIRFAPPLVIKEDELRESIEIINKTILS  403 (404)
T ss_dssp             E--TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             C--CCEEEEECCcCCCHHHHHHHHHHHHHHHHc
Confidence            3  689999999999999999999999999875

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.6e-72  Score=562.54  Aligned_cols=384  Identities=32%  Similarity=0.551  Sum_probs=338.5

Q ss_pred             HHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCC
Q 011777           58 DQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLH  137 (477)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~  137 (477)
                      +++++..+++....   |.+.|+++++|+|+||||.|||+||||.+++++++|||+||+|.+|+.+|++++.+....+.+
T Consensus         2 ~~~~~~~~~~~~~~---y~~~p~~i~ra~G~~l~d~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~~~~~~~~   78 (387)
T d1vefa1           2 RALLEAEKTLDSGV---YNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPT   78 (387)
T ss_dssp             HHHHHHHHHHBCSC---SCCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCC
T ss_pred             hhHHhhhhhccCCC---CCCCCceEEEeEcCEEEECCCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhcccccccCC
Confidence            45677777665432   346799999999999999999999999999999999999999999999999997766555678


Q ss_pred             hHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCC--CC
Q 011777          138 HAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ--GE  215 (477)
Q Consensus       138 ~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~--~~  215 (477)
                      +...++++++.+..+...++++|++||+||||.|+|+||.+++|.+|+.++++|||++.++++.++.+.++....+  .+
T Consensus        79 ~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~  158 (387)
T d1vefa1          79 PMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEP  158 (387)
T ss_dssp             HHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSC
T ss_pred             chHHHHHHHhhhhccccceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCC
Confidence            8899999999999988888999999999999999999999999999999999999999999998876544322211  23


Q ss_pred             eeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc
Q 011777          216 IHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT  295 (477)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~  295 (477)
                      +.+++        +++     .+.|++.++    +++|+||+||+++++|+++++++||++|+++|++||+++|+|||+|
T Consensus       159 ~~~~p--------~~d-----~~~l~~~~~----~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t  221 (387)
T d1vefa1         159 VEFIP--------YND-----VEALKRAVD----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT  221 (387)
T ss_dssp             EEEEC--------TTC-----HHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred             ceEeC--------CCC-----HHHHHHhcC----CCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEeccccc
Confidence            44443        222     467777764    6899999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHH
Q 011777          296 GFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQA  375 (477)
Q Consensus       296 gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~  375 (477)
                      ||||+| .+|+++++|+.||++|+||+++||+|++++++++++++.+....+++||++||++|+|++++|++++++++++
T Consensus       222 GfgR~G-~~~~~~~~~v~PDi~~~gK~l~gG~~~~~~~~~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~~~~~~  300 (387)
T d1vefa1         222 GMGRTG-KRFAFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWE  300 (387)
T ss_dssp             TTTTTS-SSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHH
T ss_pred             ccCccC-CCcccccCCcCCceeeecccCCCCccccccccceeeeeccccCCccccCCCCcchhhhcccchhhcccccccc
Confidence            999999 8999999999999999999999999999999999999999888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCC
Q 011777          376 HCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPP  455 (477)
Q Consensus       376 ~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~  455 (477)
                      ++.+.+++++++|+++.  ++.+.++|+.|+|+++++.++.         ...+.+.++++|+++.+.+  ++.+||+||
T Consensus       301 ~v~~~g~~l~~~L~~l~--~~~v~~vrg~Gl~~~ie~~~~~---------~~~~~~~~~~~g~l~~~~g--~~~ir~~Pp  367 (387)
T d1vefa1         301 RAAELGPWFMEKLRAIP--SPKIREVRGMGLMVGLELKEKA---------APYIARLEKEHRVLALQAG--PTVIRFLPP  367 (387)
T ss_dssp             HHHHHHHHHHHHHHTSC--CTTEEEEEEETTEEEEEESSCS---------HHHHHHHHHHHCEECEESS--TTEEEECCC
T ss_pred             hHhhhhHHHHHHHHhcC--CCceEEEeecceEEEEEEeCCc---------hHHHHHHHHHCCCeEEecC--CCEEEEECC
Confidence            99999999999999874  4678899999999999995421         3456777888999887754  689999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHh
Q 011777          456 MCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       456 ~~~t~e~i~~~l~~l~~~l~  475 (477)
                      +++|++|||+++++++++|+
T Consensus       368 l~it~~~ld~~~~~i~~aLS  387 (387)
T d1vefa1         368 LVIEKEDLERVVEAVRAVLA  387 (387)
T ss_dssp             TTCCHHHHHHHHHHHHHHHC
T ss_pred             ccCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999874

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=100.00  E-value=5.1e-71  Score=560.88  Aligned_cols=410  Identities=23%  Similarity=0.313  Sum_probs=345.5

Q ss_pred             CCCCHHHHHHHHhhhcCCCc---c----ccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHH
Q 011777           53 TGPSADQVFQKRKQFLGPSI---F----HYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQS  125 (477)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~---~----~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l  125 (477)
                      ..+++++++++.+++++-+.   +    .+...|+++++|+|+||||.|||+||||.+++++++|||+||+|++|+++|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~~i~~a~G~~l~D~~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~   81 (427)
T d2gsaa_           2 KTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAM   81 (427)
T ss_dssp             CCHHHHHHHHHHHHHSGGGSSSGGGCCTTTSSCCCCEEEEEBTEEEETTSCEEEESSGGGTTTTTCBTCHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHhhcCCCCCCCccccccCCCCCcEEEEeecCEEEECCCCEEEEechhHHHHhccCCcHHHHHHHHHHH
Confidence            34678999999999986322   1    2335699999999999999999999999999999999999999999999999


Q ss_pred             hhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCC
Q 011777          126 KLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALN  205 (477)
Q Consensus       126 ~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~  205 (477)
                      +++.+.  ........++++++.+..+. .+.++|++||+||||.|+|+||.+++|.+||.++++|||++.++++.++..
T Consensus        82 ~~~~~~--~~~~~~~~~la~~~~~~~~~-~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~  158 (427)
T d2gsaa_          82 EKGTSF--GAPCALENVLAEMVNDAVPS-IEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSG  158 (427)
T ss_dssp             TTCSCC--SSCCHHHHHHHHHHHHHSTT-CSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHH
T ss_pred             HhcCcc--ccchhHHHHHHHHHHhhCCc-cccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCc
Confidence            986543  23456677889999988775 589999999999999999999999999999999999999999999998765


Q ss_pred             CCCCCCCC-CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHh
Q 011777          206 TWKYPIPQ-GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKA  284 (477)
Q Consensus       206 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~  284 (477)
                      .++...+. +++.....++....++++     ++++|++++. +++++++||+||+++++|+++|+++||++|+++|++|
T Consensus       159 ~~~~~~p~~~~~~~~~~~~~~~~~~~~-----~~~le~~~~~-~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~  232 (427)
T d2gsaa_         159 VATLGLPSSPGVPKKTTANTLTTPYND-----LEAVKALFAE-NPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEH  232 (427)
T ss_dssp             HHHTTCCSCSSSCHHHHTTEEEECTTC-----HHHHHHHHTT-STTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHT
T ss_pred             ccccCCCCCCCCcccCccceeccCcch-----HHHHHHHHHh-CCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHh
Confidence            44333332 233333333333444443     6888888874 3578999999999999999999999999999999999


Q ss_pred             CcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhhcc---cccccCCCCcHHHHHHH
Q 011777          285 GGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVMAQ---KIQFNTFGGNPVCSAGG  361 (477)
Q Consensus       285 gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~~~---~~~~~t~~~~~~~~aaa  361 (477)
                      |++||+||||||| |+| .+|+++++|+.||++++||+++||+|+|++++++++++.+..   ..+++||++||++|+|+
T Consensus       233 ~~llI~DEv~tG~-r~g-~~~~~~~~gi~PDi~~~gK~lggG~p~~a~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAa  310 (427)
T d2gsaa_         233 DALLVFDEVMTGF-RIA-YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAG  310 (427)
T ss_dssp             TCEEEEECTTTBT-TTB-TTCHHHHTTCCCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHH
T ss_pred             ceeeeeccccccc-eec-ccchHHhcCCCHHHHhhhhccCCCcceeeeeehHHHHHHhcccCCCcCCCCCCCCchhhHHH
Confidence            9999999999999 778 789999999999999999999999999999999999998864   35789999999999999


Q ss_pred             HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCC-----CCCccHHHHHHHHHHHHHc
Q 011777          362 LAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRK-----EKTPAKAETAVLFEKLREL  436 (477)
Q Consensus       362 ~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~-----~~~~~~~~~~~~~~~l~~~  436 (477)
                      +++|++++++++.+++++++++++++|+++.++++....+.+.|.|+++.+.....     .+..+......+.+.|+++
T Consensus       311 la~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~  390 (427)
T d2gsaa_         311 IKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQ  390 (427)
T ss_dssp             HHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHT
T ss_pred             HHhhHHhhhhhHHhhhhHHHHHHHHHHHHHHhhcCCCcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999998877787888888888754321     1222344456788899999


Q ss_pred             CceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          437 GVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       437 Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      ||++.|+.. .   ++.||+++|++|||+++++|++++++|
T Consensus       391 Gv~l~p~~~-~---~~~~~l~~Te~dId~~l~al~~al~~L  427 (427)
T d2gsaa_         391 GIYLAPSQF-E---AGFTSLAHTEEDIDATLAAARTVMSAL  427 (427)
T ss_dssp             TEECCSSTT-S---CEECCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred             CEEECCCCC-c---ceeCCCCCCHHHHHHHHHHHHHHHHhC
Confidence            999987532 1   345799999999999999999999875

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=5.9e-71  Score=565.03  Aligned_cols=416  Identities=24%  Similarity=0.349  Sum_probs=339.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHH
Q 011777           38 TPPQLPPFDHDPKPYTGPSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDV  117 (477)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v  117 (477)
                      ++++.|.+.+   .+|||++++++++..++..+...   ..|+++++|+|+||||.|||+||||.+|+++++|||+||+|
T Consensus         1 ~~~~~~~~~~---~~pgp~s~~l~~~~~~~~~~~~~---~~p~~~~~g~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v   74 (461)
T d1ohwa_           1 FDYDGPLMKT---EVPGPRSRELMKQLNIIQNAEAV---HFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPAL   74 (461)
T ss_dssp             CCCSSCBCCS---CSSCHHHHHHHHHHHHHSCCTTC---CCCBCTTTCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHH
T ss_pred             CCCCCCEEec---CCCChHHHHHHHHHHHhcCCCCC---CCCeEEEEeecCEEEECCCCEEEEcccCHHHHhhcCCcHHH
Confidence            3567776665   58999999999999888765432   34789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcccccc-----ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhc--------------
Q 011777          118 LNAIFEQSKLLQHATT-----IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLS--------------  178 (477)
Q Consensus       118 ~~Av~~~l~~~~~~~~-----~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~--------------  178 (477)
                      ++|+.+|+++..+...     .......++|+++|.+..+.++++|+|++||+||||.|||+||.+              
T Consensus        75 ~~ai~~q~~~~~~~~~~~~~~~~~~~~a~~lae~l~~~~~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~  154 (461)
T d1ohwa_          75 VKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKE  154 (461)
T ss_dssp             HHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHHHHhhhhhcccccccccchHHHHHHHHHHHHhhhccCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccch
Confidence            9999999887543221     122344667888888888888899999999999999999999875              


Q ss_pred             ------------cCCceEEEEccCccCCcccccccccCCCCCCCCC-CCCeeeecCCCCcCCCCCC---C----HHHHHH
Q 011777          179 ------------TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIP-QGEIHHVVNPDPYHGSFGS---D----AARYAQ  238 (477)
Q Consensus       179 ------------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~----~~~~~~  238 (477)
                                  +++.+||+++++|||.+.+++++++.+.++.... ..+....+.+. +..+...   +    ...+.+
T Consensus       155 ~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  233 (461)
T d1ohwa_         155 ELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPR-LKYPLEEFVKENQQEEARCLE  233 (461)
T ss_dssp             HHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCEECCCC-CCSSGGGCHHHHHHHHHHHHH
T ss_pred             hhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCccccccc-ccccccccccccchhhhhhHH
Confidence                        3456899999999999999999998754432222 11222222211 1111111   0    122456


Q ss_pred             HHHHHHhc--cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCC--Cc
Q 011777          239 DLQDHIDF--GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV--IP  314 (477)
Q Consensus       239 ~le~~i~~--~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv--~p  314 (477)
                      ++++++..  .+++++++||+||+||++|+++++++||++|+++|++||++||+||||+|||||| ++|+++++|+  .|
T Consensus       234 ~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG-~~~~~e~~gi~~~P  312 (461)
T d1ohwa_         234 EVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTG-KFWAHEHWGLDDPA  312 (461)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTS-SSSGGGGGCCSSCC
T ss_pred             HHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceecccccccccccc-ccccccccccccCc
Confidence            67777652  3467899999999999999999999999999999999999999999999999999 8999999998  49


Q ss_pred             ceeeecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHh
Q 011777          315 DIVTMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQER  394 (477)
Q Consensus       315 Divt~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~  394 (477)
                      |++|+||++++|.+++    ... +.......+++||++||++|++++++|++++++++++++++++++++++|+++..+
T Consensus       313 Div~~gK~l~~g~~~~----~~~-~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~  387 (461)
T d1ohwa_         313 DVMTFSKKMMTGGFFH----KEE-FRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQAR  387 (461)
T ss_dssp             SEEEECGGGSSEEEEE----CGG-GSCSSTTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhccccccccc----ccc-cccccccccccccccccccchhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999863322    222 22233446889999999999999999999999999999999999999999999999


Q ss_pred             CC-CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          395 HD-IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       395 ~~-~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      ++ .+.++||.|+|+++++.        +.....++.+.|+++||++.+.+  +++|||.||+++|++|||+++++|+++
T Consensus       388 ~~~~i~~vrG~Gl~~~ie~~--------~~~~~~~i~~~~~~~Gll~~~~~--~~~ir~~PpL~it~~eid~~~~~l~~~  457 (461)
T d1ohwa_         388 YPQFISRVRGRGTFCSFDTP--------DESIRNKLISIARNKGVMLGGCG--DKSIRFRPTLVFRDHHAHLFLNIFSDI  457 (461)
T ss_dssp             CTTTCEEEEEETTEEEEECS--------SHHHHHHHHHHHHHTTEECEEET--TTEEECCCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCceEEeeeeeEEEEEEcC--------CHHHHHHHHHHHHHCCeEEeeCC--CCEEEEeCCcCCCHHHHHHHHHHHHHH
Confidence            85 78899999999999983        34556789999999999998765  689999999999999999999999999


Q ss_pred             Hhh
Q 011777          474 MSK  476 (477)
Q Consensus       474 l~~  476 (477)
                      +++
T Consensus       458 l~e  460 (461)
T d1ohwa_         458 LAD  460 (461)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            976

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.8e-69  Score=547.29  Aligned_cols=402  Identities=25%  Similarity=0.347  Sum_probs=333.2

Q ss_pred             HHHHHHhhhcCCCcc-ccccCce-eEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccc-ccc
Q 011777           59 QVFQKRKQFLGPSIF-HYYQKPL-NIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT-TIY  135 (477)
Q Consensus        59 ~~~~~~~~~~~~~~~-~~~~~p~-~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~-~~~  135 (477)
                      +.++.+++|+++.+. .....|+ .+++|+|+||||.|||+||||.+|+++++|||+||+|++|+++|++++.|.. ..+
T Consensus         4 ~~~~~d~~h~~~p~~~~~~~~p~~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~   83 (429)
T d1s0aa_           4 DDLAFDQRHILHPFTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGI   83 (429)
T ss_dssp             HHHHHHHHHBCCTTCCSSSCCCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSE
T ss_pred             HHHHHHHHhcCCCcccCCCCCCCcceEEeECCEEEECCCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCcccCCc
Confidence            334466777765332 2223455 4899999999999999999999999999999999999999999999987643 345


Q ss_pred             CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhcc-----CCceEEEEccCccCCcccccccccCCCCCCC
Q 011777          136 LHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLST-----GNLGMIALRNAYHGGSSGTIGLTALNTWKYP  210 (477)
Q Consensus       136 ~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~-----~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  210 (477)
                      .++...++++++.+..|.+.++++|++||+||++.|+|++|.++     ++.+||+++++|||.+.++++.++...+...
T Consensus        84 ~~~~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~  163 (429)
T d1s0aa_          84 THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHS  163 (429)
T ss_dssp             ECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGG
T ss_pred             cchHHHHHHHHHHhhhccCcceeeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCcccccc
Confidence            67888999999999999889999999999999999999999874     4568999999999999999999875443322


Q ss_pred             CC---CCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccC-CCCCeeeCCchhHHHHHHHHHHhCc
Q 011777          211 IP---QGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQ-GVGGAVELAPGYLKLVYDIVRKAGG  286 (477)
Q Consensus       211 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~-~~~G~~~~~~~~l~~l~~l~~~~gi  286 (477)
                      ..   .......+.+........ + ...++++++.+.. .++++++||+||++ +.||+++|+++|+++|+++|++||+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~-~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gi  240 (429)
T d1s0aa_         164 LWKGYLPENLFAPAPQSRMDGEW-D-ERDMVGFARLMAA-HRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGI  240 (429)
T ss_dssp             GGTTTSCCCEEECCCCSBC-CCC-C-GGGGHHHHHHHHH-HTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTC
T ss_pred             ccCcccccccccccccccccccc-c-hhhhhhhhhhhhh-cCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCc
Confidence            11   122222222222111111 1 1224555555543 24789999999987 7788889999999999999999999


Q ss_pred             EEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhccc-----ccccCCCCcHHHHHH
Q 011777          287 VCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQK-----IQFNTFGGNPVCSAG  360 (477)
Q Consensus       287 llI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~-----~~~~t~~~~~~~~aa  360 (477)
                      +||+|||||||||+| ++|+++++++.||++|+||+++|| +|+|++++++++++.+...     .|++||++||++|+|
T Consensus       241 llI~DEV~tGfGRtG-~~~~~~~~~v~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aa  319 (429)
T d1s0aa_         241 LLIADEIATGFGRTG-KLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAA  319 (429)
T ss_dssp             EEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHH
T ss_pred             ceehhhccccccccc-cccccccceecccccccccccccccccccchhhHHHHHhccCCCCCcceeecCCCCCCcccchh
Confidence            999999999999999 899999999999999999999987 8999999999999887542     478999999999999


Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCcee
Q 011777          361 GLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLV  440 (477)
Q Consensus       361 a~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v  440 (477)
                      ++++|++++++++.+++++++++++++|+++. +++.+.++||.|+|+++++..+.        ....+.+.|+++||++
T Consensus       320 a~a~L~~i~~~~~~~~~~~~g~~l~~~L~~l~-~~~~v~~vrg~Gl~~~~e~~~~~--------~~~~~~~~~~~~Gl~~  390 (429)
T d1s0aa_         320 ANASLAILESGDWQQQVADIEVQLREQLAPAR-DAEMVADVRVLGAIGVVETTHPV--------NMAALQKFFVEQGVWI  390 (429)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGG-GCTTEEEEEEETTEEEEEESSCB--------CHHHHHHHHHHTTEEC
T ss_pred             hhccccccccccccchhhHHHHHHHHHHHHhc-cCCceEEEeecccEEEEEecCcc--------cHHHHHHHHHHCCcEE
Confidence            99999999999999999999999999998875 57889999999999999986431        1456888999999999


Q ss_pred             eccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          441 GKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       441 ~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .+.   ++++||+||+++|++|||+++++|++++++
T Consensus       391 ~~~---g~~i~~~Ppl~it~~eid~~~~~l~~al~e  423 (429)
T d1s0aa_         391 RPF---GKLIYLMPPYIILPQQLQRLTAAVNRAVQD  423 (429)
T ss_dssp             CCB---TTEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred             Eec---CCEEEEeCCcCCCHHHHHHHHHHHHHHHHh
Confidence            875   589999999999999999999999999875

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=100.00  E-value=1.1e-68  Score=540.25  Aligned_cols=389  Identities=26%  Similarity=0.463  Sum_probs=318.0

Q ss_pred             HHHHHHHHhhhcCCCccccccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccC
Q 011777           57 ADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL  136 (477)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~  136 (477)
                      .+++++...+|.+..   |.+.|+++++|+|.||||.|||+||||.+|+++++|||+||+|++|+++|++++.+....+.
T Consensus         3 ~~~~~~~~~~~~~~~---y~p~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~   79 (404)
T d1z7da1           3 PEDYINNELKYGAHN---YDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFF   79 (404)
T ss_dssp             HHHHHHHHHHHBCCC---CCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTSE
T ss_pred             HHHHHHHHHhcCCCC---CCCCCceEEEeecCEEEECCCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCCcccccc
Confidence            477888888888754   33568999999999999999999999999999999999999999999999998766554444


Q ss_pred             ChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccC--------CceEEEEccCccCCcccccccccCCCCC
Q 011777          137 HHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTG--------NLGMIALRNAYHGGSSGTIGLTALNTWK  208 (477)
Q Consensus       137 ~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~--------~~~ii~~~~~yhG~~~~~~~~~~~~~~~  208 (477)
                      +.....+++.+.+..+  .+.++|++||+||++.|++++|.++.        +.+++.+.++|||.+......+....++
T Consensus        80 ~~~~~~~~~~~~~~~~--~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~  157 (404)
T d1z7da1          80 SVPLGICERYLTNLLG--YDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCT  157 (404)
T ss_dssp             EHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC------------------
T ss_pred             hHHHHHHHHhhhhccc--cceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccc
Confidence            4555555555555543  47899999999999999999997652        3479999999999999988887655444


Q ss_pred             CCCCC--CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCc
Q 011777          209 YPIPQ--GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGG  286 (477)
Q Consensus       209 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gi  286 (477)
                      ....+  ..+.+.+        +++     .+.++..+.   .+++|+||+||+++++|+++|+++||++|+++|++||+
T Consensus       158 ~~~~~~~~~~~~~~--------~~~-----~~~l~~~~~---~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~  221 (404)
T d1z7da1         158 SNFGPFAPQFSKVP--------YDD-----LEALEEELK---DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNV  221 (404)
T ss_dssp             --------CEEEEC--------TTC-----HHHHHHHHT---STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTC
T ss_pred             cCCCCCCccccccc--------cch-----HHHHHHHhc---CCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCC
Confidence            32211  2333332        221     355555554   57899999999999999999999999999999999999


Q ss_pred             EEEEcCcccCccCCCCCCccccccCCCcceeeecccccCc-cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHH
Q 011777          287 VCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNG-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVL  365 (477)
Q Consensus       287 llI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l  365 (477)
                      +||+|||||||||+| .+|+++++|+.|||+|+||+++|| +|+|++++++++++.+....+++||++||++|+|++++|
T Consensus       222 llI~DEV~tGfgRtG-~~~~~e~~gv~PDivt~gK~l~gG~~p~~~v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L  300 (404)
T d1z7da1         222 LFVADEVQTGLGRTG-KLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEAL  300 (404)
T ss_dssp             EEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHH
T ss_pred             EEEEEcCccCCCccc-ccccccccCCCCCEEEEcccccCCCCCcccccchHHHHccCCCCCcCcCCCCCcchhhhhhhhh
Confidence            999999999999999 899999999999999999999988 899999999999999998889999999999999999999


Q ss_pred             HhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC
Q 011777          366 RVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL  445 (477)
Q Consensus       366 ~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~  445 (477)
                      +++.++++.+++.+.++++.+++.++.++++.+.+++|.|+|+++++.++..       ....+.+.|+++||++.+.+ 
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~-------~~~~~~~~l~~~Gl~~~~~~-  372 (404)
T d1z7da1         301 NVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELV-------NVLDICLKLKENGLITRDVH-  372 (404)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTTC-------CHHHHHHHHHHTTEECCEET-
T ss_pred             hhhhcchhhhhhccchhHHHHHHHHHHhcCCCeEEEEeeCcEEEEEEcCCcc-------cHHHHHHHHHhCCeEEecCC-
Confidence            9999999999999999999999999999999999999999999999965421       13467889999999998754 


Q ss_pred             CCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          446 HGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       446 ~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                       ++.|||.||+++|+++||+++++|++++++
T Consensus       373 -~~~ir~~Ppl~it~~~id~~~~~l~~alk~  402 (404)
T d1z7da1         373 -DKTIRLTPPLCITKEQLDECTEIIVKTVKF  402 (404)
T ss_dssp             -TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             -CCEEEEECCcCCCHHHHHHHHHHHHHHHHh
Confidence             689999999999999999999999999976

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-35  Score=297.22  Aligned_cols=352  Identities=15%  Similarity=0.146  Sum_probs=251.4

Q ss_pred             ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCCC-CHHHHHHHHHHHhhcccccc-----ccCChHHHHHHHHHHh
Q 011777           76 YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHC-HPDVLNAIFEQSKLLQHATT-----IYLHHAIADFAEALAS  149 (477)
Q Consensus        76 ~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh~-~p~v~~Av~~~l~~~~~~~~-----~~~~~~~~~l~~~La~  149 (477)
                      |+...++.+++|.++||.||++||||+++.+   ||++ ||+|++|+.++++++.....     .+..+...+|+++|++
T Consensus        25 ~r~~~~i~~~~g~~v~~~dG~~~l~f~s~dY---LGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~  101 (401)
T d1fc4a_          25 FKEERIITSAQQADITVADGSHVINFCANNY---LGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAA  101 (401)
T ss_dssp             CCCCCCBCSCSSSEEEBTTSCEEEECCCSCT---TSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHH
T ss_pred             CCcceeccCCCCCeEEecCCCEEEEEEcccc---ccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHH
Confidence            3445678899999999999999999987654   7875 99999999999998543222     1246778899999999


Q ss_pred             hCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCC
Q 011777          150 KMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSF  229 (477)
Q Consensus       150 ~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (477)
                      +++  .+.++++|||++||..+++..   .++..+|+.+...|.............          +..+        ++
T Consensus       102 ~~g--~e~al~~~SG~~An~~~i~~l---~~~~d~i~~d~~~h~s~~~G~~~~~a~----------~~~~--------~~  158 (401)
T d1fc4a_         102 FLG--MEDAILYSSCFDANGGLFETL---LGAEDAIISDALNHASIIDGVRLCKAK----------RYRY--------AN  158 (401)
T ss_dssp             HHT--CSEEEEESCHHHHHHTTHHHH---CCTTCEEEEETTCCHHHHHHHHTSCSE----------EEEE--------CT
T ss_pred             hhc--CCceEEecchhhhhHHHHHHh---cCCCcEEEeCCcchHHHHccccccCce----------EEEE--------cC
Confidence            984  478999999999999999854   244444444444444433222222111          1111        11


Q ss_pred             CCCHHHHHHHHHHHHhc--cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCc-c
Q 011777          230 GSDAARYAQDLQDHIDF--GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW-G  306 (477)
Q Consensus       230 ~~~~~~~~~~le~~i~~--~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~-~  306 (477)
                      + |    .++++++++.  .+....++|++|++.++.|.+.|    |++|++||++||++||+||+|+++ ..|.... .
T Consensus       159 ~-d----~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~----L~~l~~L~~~~~a~LivDeah~~g-~~g~~G~G~  228 (401)
T d1fc4a_         159 N-D----MQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVG-FVGENGRGS  228 (401)
T ss_dssp             T-C----HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTT-TSSTTSCCH
T ss_pred             C-C----hHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhh----hhHHHHHHhhcCcEEEehhhhccc-cccCCCCcc
Confidence            1 1    3556655542  23456689999999999998887    999999999999999999999854 3331212 2


Q ss_pred             ccccCCC--ccee--eecccccCccceEEEEeCHHHHHhhcccc--cccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHH
Q 011777          307 FETQGVI--PDIV--TMAKGIGNGLPLGAVVTTPEIANVMAQKI--QFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCAD  379 (477)
Q Consensus       307 ~~~~gv~--pDiv--t~sK~lg~G~pig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~  379 (477)
                      .+++++.  +|++  |+||+++ |.+.|++.+++++++.+....  +..+.+.+|...+++.++++.+.. +++.+++++
T Consensus       229 ~~~~~~~~~~dii~~tl~Ka~g-g~~Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~  307 (401)
T d1fc4a_         229 HEYCDVMGRVDIITGTLGKALG-GASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWA  307 (401)
T ss_dssp             HHHTTCTTCCSEEEEESSSTTC-SSSCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             chhccCCCCCeEEEeecccccc-cCCcccccCCHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcccccCHHHHHHHHH
Confidence            3555653  5555  7999996 455699999999999886432  334455678888888888887765 567899999


Q ss_pred             HHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-----CCCCEEEEeC
Q 011777          380 VGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-----LHGNVFRIKP  454 (477)
Q Consensus       380 ~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~iRi~p  454 (477)
                      +.+++++.+.+..  ...   ....+.++.+.+.        +...+..+.+.|+++||++.+..     .....+||++
T Consensus       308 ~~~~~~~~l~~~g--~~~---~~~~~pIv~v~~~--------~~~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~  374 (401)
T d1fc4a_         308 NARQFREQMSAAG--FTL---AGADHAIIPVMLG--------DAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQM  374 (401)
T ss_dssp             HHHHHHHHHHHTT--CCB---CCSSSSEEEEEEE--------CHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEEC
T ss_pred             HHHHHHhhhcccC--Ccc---CCCCCCEEEEEEC--------CHHHHHHHHHHHHHCCceEEeECCCCCCCCCceEEEEE
Confidence            9999998887752  111   1223455556553        23456678999999999986532     1235699999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhhC
Q 011777          455 PMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       455 ~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      +..+|+||||+++++|+++.+++
T Consensus       375 ~a~hT~edId~~v~al~ev~~~l  397 (401)
T d1fc4a_         375 SAAHTPEQITRAVEAFTRIGKQL  397 (401)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999998864

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.8e-31  Score=264.06  Aligned_cols=345  Identities=17%  Similarity=0.187  Sum_probs=249.5

Q ss_pred             ccCceeEEeeeccEEEeCCCCEEEeecCCcccccCCC-CCHHHHHHHHHHHhhccccc--c---ccCChHHHHHHHHHHh
Q 011777           76 YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGH-CHPDVLNAIFEQSKLLQHAT--T---IYLHHAIADFAEALAS  149 (477)
Q Consensus        76 ~~~p~~~~~g~G~~~~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~Av~~~l~~~~~~~--~---~~~~~~~~~l~~~La~  149 (477)
                      ++.+..+.++.|.++. .||++||||+++.+   ||. .||+|++++.++++++....  +   .+..+...+|+++|++
T Consensus        19 ~~~~~~~~~~~g~~i~-~~g~~~l~f~s~dY---LGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~   94 (383)
T d1bs0a_          19 LRRRYPVAQGAGRWLV-ADDRQYLNFSSNDY---LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAE   94 (383)
T ss_dssp             CCCCCCCSBCSSSEEE-ETTEEEEECSCCCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHH
T ss_pred             CccccccCCCCCCeEE-ECCeEEEEEEcccc---cccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHH
Confidence            4445667899999996 99999999988765   776 49999999999999853211  1   2456788999999999


Q ss_pred             hCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCC
Q 011777          150 KMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSF  229 (477)
Q Consensus       150 ~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (477)
                      +++  .+.+++++||..||..++..   ..++..+++.+...|.............            ...+      +.
T Consensus        95 ~~g--~e~al~~~SG~~an~~~i~a---l~~~~d~v~~d~~~h~si~~g~~~~~~~------------~~~~------~h  151 (383)
T d1bs0a_          95 WLG--YSRALLFISGFAANQAVIAA---MMAKEDRIAADRLSHASLLEAASLSPSQ------------LRRF------AH  151 (383)
T ss_dssp             HHT--CSEEEEESCHHHHHHHHHHH---HCCTTCEEEEETTCCHHHHHHHHTSSSE------------EEEE------CT
T ss_pred             hcC--CCceEEecccchhhHHHHHh---hcCCCceEEeeccccHHHhhccccCCCc------------ceEe------cc
Confidence            995  47899999999999999874   3466677777777887665544333211            1111      11


Q ss_pred             CCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc-cc
Q 011777          230 GSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG-FE  308 (477)
Q Consensus       230 ~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~-~~  308 (477)
                      ++     .+++++.+... ..+..+|++|.++++.|.+.|    +++|.++|++||++||+||+|+ +|-.|....+ .+
T Consensus       152 nd-----~~~le~~l~~~-~~~~~~vv~e~v~s~~G~i~p----l~~l~~l~~~~~~~livDeah~-~gv~G~~g~G~~~  220 (383)
T d1bs0a_         152 ND-----VTHLARLLASP-CPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHG-TGVIGEQGRGSCW  220 (383)
T ss_dssp             TC-----HHHHHHHHHSC-CSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSSGGGCCHHH
T ss_pred             hH-----HHHHHHHhccc-CCCceEEEecCCCCCCCcccc----hhHHHHHHHhcCcEEEeeccee-eeecCCcccchHH
Confidence            21     47888888743 345678999999999998888    9999999999999999999998 4333312222 47


Q ss_pred             ccCCCccee--eecccccCccceEEEEeCHHHHHhhcccc--cccCCCCcHHHHHHHHHHHHhhchh---hHHHHHHHHH
Q 011777          309 TQGVIPDIV--TMAKGIGNGLPLGAVVTTPEIANVMAQKI--QFNTFGGNPVCSAGGLAVLRVIDKE---RRQAHCADVG  381 (477)
Q Consensus       309 ~~gv~pDiv--t~sK~lg~G~pig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a~l~~l~~~---~~~~~~~~~~  381 (477)
                      ++++.+|++  ++||++|.  ..|+++++.++++.++...  +..+...+|..++++++++++++..   ...+++.++.
T Consensus       221 ~~~~~~~~~~~t~~ka~g~--~Gg~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~  298 (383)
T d1bs0a_         221 LQKVKPELLVVTFGKGFGV--SGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALI  298 (383)
T ss_dssp             HTTCCCSEEEEESSSTTSS--CCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred             HcCCccccccccccccccc--cccccccchhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            788888766  47787764  3489999999998886542  3345566788888888888877643   4556666677


Q ss_pred             HHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-----CCCCEEEEeCCC
Q 011777          382 SHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-----LHGNVFRIKPPM  456 (477)
Q Consensus       382 ~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~iRi~p~~  456 (477)
                      .++++.|.++    +. ....+.+.++.+.+.        +...+.++.+.|+++||++.+..     .....+||+++.
T Consensus       299 ~~~~~~l~~~----g~-~~~~~~s~Ii~v~~g--------~~~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a  365 (383)
T d1bs0a_         299 TRFRAGVQDL----PF-TLADSCSAIQPLIVG--------DNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTA  365 (383)
T ss_dssp             HHHHHHHTTS----SC-EECSCCSSBCCEEEE--------SHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCT
T ss_pred             HHHHHHHHhc----CC-ccCCCCCCEEEEEEC--------CHHHHHHHHHHHHHCCceEEEEcCCCCCCCCceEEEEeCC
Confidence            7777666543    32 112333445555442        23456788999999999986532     123469999999


Q ss_pred             CCcHHHHHHHHHHHHHH
Q 011777          457 CFTKDDADFLVDALDYS  473 (477)
Q Consensus       457 ~~t~e~i~~~l~~l~~~  473 (477)
                      .+|+||||+++++|+.+
T Consensus       366 ~ht~edid~l~~~L~~~  382 (383)
T d1bs0a_         366 AHEMQDIDRLLEVLHGN  382 (383)
T ss_dssp             TCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            99999999999999864

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=9.2e-29  Score=246.41  Aligned_cols=345  Identities=12%  Similarity=0.015  Sum_probs=224.0

Q ss_pred             CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHHH
Q 011777           93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEAN  168 (477)
Q Consensus        93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA~  168 (477)
                      .+|+++|||..|...  +. .+|+|.+++.+.++...  |....+..+.++.+++++.+..+  .+.++|++|+|+++|+
T Consensus        28 ~~G~~vi~l~~g~p~--~~-~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al  104 (382)
T d1b5pa_          28 RQGVDLVALTAGEPD--FD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQAL  104 (382)
T ss_dssp             HTTCCCEECCCSSCS--SC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHH
T ss_pred             hCCCCeEECCCCCCC--CC-CCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHH
Confidence            457788999887753  32 47899999999887643  22223344566777777766654  3567899999999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      ..+++....  .++.|++.+++|+++.......+             ...+.+|......+..|    ++++++.++   
T Consensus       105 ~~~~~~l~~--~gd~vl~~~P~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~d----~~~l~~~~~---  162 (382)
T d1b5pa_         105 FNLFQAILD--PGDEVIVLSPYWVSYPEMVRFAG-------------GVVVEVETLPEEGFVPD----PERVRRAIT---  162 (382)
T ss_dssp             HHHHHHHCC--TTCEEEEEESCCTHHHHHHHHTT-------------CEEEEEECCGGGTTCCC----HHHHHTTCC---
T ss_pred             HHHHHHhCC--CCCEEEECCCCcHHHHHHHHHhc-------------CeEEEEecccccccCCC----HHHHHHhCC---
Confidence            999986532  56789999999998755443332             22222221111122222    356665543   


Q ss_pred             CCCee-EEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccc-ccCCCcceeeeccccc-C
Q 011777          249 SGKVA-GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE-TQGVIPDIVTMAKGIG-N  325 (477)
Q Consensus       249 ~~~~a-~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~-~~gv~pDivt~sK~lg-~  325 (477)
                       ++++ .++++| +|++| .+++++.+++|.++|++||++||+||+|.+|.+.+....... ..+...-+.++||.++ .
T Consensus       163 -~~~~~i~~~~P-~NPTG-~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~  239 (382)
T d1b5pa_         163 -PRTKALVVNSP-NNPTG-AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMT  239 (382)
T ss_dssp             -TTEEEEEEESS-CTTTC-CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCG
T ss_pred             -CCCeEEEECCC-CCCcc-hhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhccCc
Confidence             3454 555556 56666 567899999999999999999999999999877763222211 1122223447899999 7


Q ss_pred             ccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc-hhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc
Q 011777          326 GLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID-KERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGR  404 (477)
Q Consensus       326 G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~-~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~  404 (477)
                      |+|+||+++++++++.+.......+.+.+.+.+.++.+.+.... .+.+.+..++..+..++.+.+.....+.....+.-
T Consensus       240 GlR~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~g  319 (382)
T d1b5pa_         240 GWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSG  319 (382)
T ss_dssp             GGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSB
T ss_pred             HhheEEEEECHHHHHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhcCCeEecCCc
Confidence            99999999999998887665555566667776666665554221 23333344443333333333333333432222334


Q ss_pred             ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC--CCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          405 GLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH--GNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       405 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      |.++|+++....       .....+.+.|+++||.+.||..+  .+++||+.  ..++|+|++++++|.+++
T Consensus       320 g~~~~~~~~~~~-------~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~--~~~~e~l~~al~rl~~~L  382 (382)
T d1b5pa_         320 AFYVLMDTSPIA-------PDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSY--ATSEENLRKALERFARVL  382 (382)
T ss_dssp             TTEEEEECTTTC-------SSHHHHHHHHHHTTEECEESGGGTCTTEEEEEC--CSCHHHHHHHHHHGGGGC
T ss_pred             eEEEeEeCCCCC-------CCHHHHHHHHHHCCEEEEeCcccCCCCeEEEEE--cCCHHHHHHHHHHHHHhC
Confidence            667787763211       12456778899999999998544  37899975  568999999999998764

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.96  E-value=3.8e-28  Score=242.35  Aligned_cols=347  Identities=10%  Similarity=0.012  Sum_probs=225.5

Q ss_pred             CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhC--CCCCCEEEEeCChHHHH
Q 011777           93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKM--PGNLKVVYFVNSGTEAN  168 (477)
Q Consensus        93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~--~~~~~~v~~~~sGseA~  168 (477)
                      .+|+.+|||..|.+  .+. .+|.|++|+++.++...  |....+..+.++.+++++.+..  +...++|++|+|+++|+
T Consensus        27 ~~g~~vi~l~~G~p--~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al  103 (388)
T d1j32a_          27 AEGIDVCSFSAGEP--DFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSI  103 (388)
T ss_dssp             TTTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred             HCCCCeEECCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHH
Confidence            35678899988764  233 47899999999887643  2222233455666777776653  34567899999999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      ..+++...  .+++.|++.+++|.++........             ...+.++......+..|    .+++++.++   
T Consensus       104 ~~~~~~~~--~~gd~Vlv~~P~y~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~d----~~~l~~~~~---  161 (388)
T d1j32a_         104 FNLMLAMI--EPGDEVIIPAPFWVSYPEMVKLAE-------------GTPVILPTTVETQFKVS----PEQIRQAIT---  161 (388)
T ss_dssp             HHHHHHHC--CTTCEEEEESSCCTHHHHHHHHTT-------------CEEEEECCCGGGTTCCC----HHHHHHHCC---
T ss_pred             HHHHHHHh--CCCCEEEEcCCCcHHHHHHHHHhc-------------CeEEEEecccccccCCC----HHHHHHhCC---
Confidence            99987653  356889999999987754433222             12222222222223222    477777665   


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc-----CCCcceeeecccc
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ-----GVIPDIVTMAKGI  323 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~-----gv~pDivt~sK~l  323 (477)
                      ++....++++| +|++| .+++++.+++|.++|++||+++|+||+|..+.+.+..+..+...     +...-+-+|||.+
T Consensus       162 ~~~~~~~~~~P-~NPTG-~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~  239 (388)
T d1j32a_         162 PKTKLLVFNTP-SNPTG-MVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTY  239 (388)
T ss_dssp             TTEEEEEEESS-CTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTT
T ss_pred             CCCeEEEECCC-CCCCC-cccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhh
Confidence            23334555666 56666 56789999999999999999999999998887665322222111     1122244799999


Q ss_pred             c-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeee
Q 011777          324 G-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR  402 (477)
Q Consensus       324 g-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~  402 (477)
                      + .|+|+||+++++++++.+.........+.+..++.++...++..  +++.++.++..+..++.+.+...+++.+....
T Consensus       240 ~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  317 (388)
T d1j32a_         240 AMTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENS--QDCVQEMLAAFAERRRYMLDALNAMPGLECPK  317 (388)
T ss_dssp             TCTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC--SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCC
T ss_pred             hcchhHeEEEEECHHHHHHHHHhhhhccccccHHHHHHHhhcccch--HHHHHHHHHHHHHHHHHHHHHHHhCCCCEecC
Confidence            9 69999999999999988766555556677788888887777643  23333333333333333333333444343334


Q ss_pred             cc-ceeEEEEEeeCCCCCCccHHHHHHHHHHH-HHcCceeeccCCC--CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          403 GR-GLMVGMELVTDRKEKTPAKAETAVLFEKL-RELGVLVGKGGLH--GNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       403 g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      +. |.++|+++....       ....++.+.| .++||.+.||..+  .+++|++.  ..+++++++++++|+++++.+
T Consensus       318 p~gg~~l~~~l~~~~-------~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~--~~~~e~l~~al~rl~~~l~~l  387 (388)
T d1j32a_         318 PDGAFYMFPSIAKTG-------RSSLDFCSELLDQHQVATVPGAAFGADDCIRLSY--ATDLDTIKRGMERLEKFLHGI  387 (388)
T ss_dssp             CCBTTEECCBCGGGT-------CCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEEC--CSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCC-------CCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEE--eCCHHHHHHHHHHHHHHHHHh
Confidence            44 566777663211       1123455555 4679999998543  47899975  468999999999999998753

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.96  E-value=7.8e-28  Score=240.03  Aligned_cols=345  Identities=13%  Similarity=0.067  Sum_probs=221.4

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhCC---CCCCEEEEeCChHHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKMP---GNLKVVYFVNSGTEANEL  170 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~~---~~~~~v~~~~sGseA~~~  170 (477)
                      +.+|||..|.+  .++ .++.|.+++.+.+++..  |....+..+.++.+++++.+...   ...++|++|+|+++++..
T Consensus        25 ~dvi~l~~g~p--~~~-~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~  101 (388)
T d1gdea_          25 KDVISLGIGEP--DFD-TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM  101 (388)
T ss_dssp             TTCEECCCCSC--CSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred             CCeEECCCCCC--CCC-CCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHH
Confidence            45789887764  343 47899999999887632  22222334556666666654322   234579999999999999


Q ss_pred             HHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCC
Q 011777          171 AMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSG  250 (477)
Q Consensus       171 Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~  250 (477)
                      +++...  .+++.|++.+++|.++...+...+.             ..+.+|......+.-|    +++|++.++    +
T Consensus       102 ~~~~l~--~~gd~vlv~~P~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~d----~~~l~~~~~----~  158 (388)
T d1gdea_         102 GLSAFL--KDGEEVLIPTPAFVSYAPAVILAGG-------------KPVEVPTYEEDEFRLN----VDELKKYVT----D  158 (388)
T ss_dssp             HHTTTC--CTTCEEEEEESCCTTHHHHHHHHTC-------------EEEEEECCGGGTTCCC----HHHHHHHCC----T
T ss_pred             HHHHhc--CCCCEEEECCCCcHHHHHHHHHcCC-------------EEEEeecccccCCCCC----HHHHHHhCc----c
Confidence            887543  3568899999999887665544432             2222222111222222    477777765    3


Q ss_pred             CeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc-CCCcc---eeeeccccc-C
Q 011777          251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ-GVIPD---IVTMAKGIG-N  325 (477)
Q Consensus       251 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~-gv~pD---ivt~sK~lg-~  325 (477)
                      +++++++...+|++| ...+++.+++|.++|++||++||+||+|..|...+.....+... +....   +-+|||.++ .
T Consensus       159 ~~~~i~~~~P~NPtG-~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~  237 (388)
T d1gdea_         159 KTRALIINSPCNPTG-AVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMT  237 (388)
T ss_dssp             TEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCG
T ss_pred             CCeEEEECCCcCCCC-CcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCc
Confidence            454444444456667 56789999999999999999999999999886655323222222 22222   337999999 7


Q ss_pred             ccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccc
Q 011777          326 GLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRG  405 (477)
Q Consensus       326 G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g  405 (477)
                      |+|+||+++++++.+.+.......+.+.+.+.+.++.++++.....+..+..++..++.+..+.+.....+.....+..|
T Consensus       238 GlR~G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~gg  317 (388)
T d1gdea_         238 GWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGA  317 (388)
T ss_dssp             GGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBT
T ss_pred             cccEEEEEeeccchhhhhhccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhccccccCCCce
Confidence            99999999999988887766555667777888877777775322222223333333333333333333333332233346


Q ss_pred             eeEEEEEeeCCCCCCccHHHHHHHHHHH-HHcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          406 LMVGMELVTDRKEKTPAKAETAVLFEKL-RELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       406 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .++|+++....       ....++.+.| .++||.+.||..+    .+++||+.  ..+++++++++++|.+++++
T Consensus       318 ~fl~~~l~~~~-------~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~--~~~~e~l~~al~rL~~~l~e  384 (388)
T d1gdea_         318 FYIFPRIRDTG-------LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISY--ATAYEKLEEAMDRMERVLKE  384 (388)
T ss_dssp             TEECCBCGGGT-------CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEEC--CSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCC-------CCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEe--cCCHHHHHHHHHHHHHHHHh
Confidence            67777763211       1134566655 4679999988443    47899965  56899999999999999975

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.96  E-value=2.7e-27  Score=234.18  Aligned_cols=344  Identities=20%  Similarity=0.187  Sum_probs=243.3

Q ss_pred             eeEEeeeccEE------EeCCCCEEEeecCCcccccCCC-CCHHHHHHHHHHHhhccccc--c---ccCChHHHHHHHHH
Q 011777           80 LNIVEGKMQYL------FDENGRRYLDAFAGIVTVSCGH-CHPDVLNAIFEQSKLLQHAT--T---IYLHHAIADFAEAL  147 (477)
Q Consensus        80 ~~~~~g~G~~~------~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~Av~~~l~~~~~~~--~---~~~~~~~~~l~~~L  147 (477)
                      ..+.+..|.+.      .+.++++++||+++.+   ||. .||+|+++..+.+++.....  +   .+..+...+|+++|
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~FsSndY---LGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~l   99 (396)
T d2bwna1          23 IDIEREKGAFPKAQWNRPDGGKQDITVWCGNDY---LGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEI   99 (396)
T ss_dssp             CEEEECTTSTTEEEEECTTSCEEEEEECSCSCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHH
T ss_pred             cccccccCCCCcceEeecCCCCeEEEEEEcccc---cCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHH
Confidence            44566666431      2335689999998776   665 59999999999999853221  1   24467889999999


Q ss_pred             HhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCC
Q 011777          148 ASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHG  227 (477)
Q Consensus       148 a~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (477)
                      +++++.  +..++++||..||..++..... .+++.+|..+...|........+++.....+                  
T Consensus       100 A~~~g~--e~all~~sG~~An~~~i~~l~~-~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f------------------  158 (396)
T d2bwna1         100 AGLHQK--EAALVFSSAYNANDATLSTLRV-LFPGLIIYSDSLNHASMIEGIKRNAGPKRIF------------------  158 (396)
T ss_dssp             HHHTTC--SEEEEESCHHHHHHHHHHHHHH-HSTTCEEEEETTCCHHHHHHHHHSCCCEEEE------------------
T ss_pred             HHHhCC--CceeeeecchHHHHHHHHHHhc-ccCCCceeehhhhhhccchhhhccccCceEe------------------
Confidence            999954  7899999999999999975422 2566788888888876555544443221111                  


Q ss_pred             CCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc-
Q 011777          228 SFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG-  306 (477)
Q Consensus       228 ~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~-  306 (477)
                      .+++     .++++++++...+.+...|++|.+.++.|.+.|    |++|.+||++||+.|++||+++ ||-.|...-+ 
T Consensus       159 ~Hnd-----~~~l~~l~~~~~~~~~~~iv~egvySmdGd~ap----l~~l~~L~~~y~~~L~vDeAHs-~Gv~G~~G~G~  228 (396)
T d2bwna1         159 RHND-----VAHLRELIAADDPAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHA-VGMYGPRGAGV  228 (396)
T ss_dssp             CTTC-----HHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSSTTSCCH
T ss_pred             ecch-----HHHhhhHHhhhcccCceeEEEEeeccCcccccc----cHhHHHHhhhhcceeeecccee-eeeeccccccc
Confidence            1121     467777776555566779999999999999998    9999999999999999999996 6544422222 


Q ss_pred             ccccCCC--ccee--eecccccC-ccceEEEEeCHHHHHhhcccccccCC--CCcHHHHHHHHHHHHhhchh---hHHHH
Q 011777          307 FETQGVI--PDIV--TMAKGIGN-GLPLGAVVTTPEIANVMAQKIQFNTF--GGNPVCSAGGLAVLRVIDKE---RRQAH  376 (477)
Q Consensus       307 ~~~~gv~--pDiv--t~sK~lg~-G~pig~v~~~~~~~~~~~~~~~~~t~--~~~~~~~aaa~a~l~~l~~~---~~~~~  376 (477)
                      .+++++.  .|++  ||||++|+ |   |++++++++++.+........|  ..+|...+++.++++++..+   .+.++
T Consensus       229 ~~~~~~~~~~di~~gTlsKa~g~~G---g~v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~  305 (396)
T d2bwna1         229 AERDGLMHRIDIFNGTLAKAYGVFG---GYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDA  305 (396)
T ss_dssp             HHHHTCGGGCSEEEEESSSTTCSCC---EEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             hhhcCCceeeeeeeecccccccccc---cccchhHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHH
Confidence            2455553  3555  79999995 7   8999999999998765444444  34577788888889887643   34566


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccC-----CCCCEE
Q 011777          377 CADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGG-----LHGNVF  450 (477)
Q Consensus       377 ~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~-----~~~~~i  450 (477)
                      +..+.+++++.+.++  .++..   ...+.++.+.+.        +...+..+.+.|+ ++||++.+..     .....+
T Consensus       306 l~~~~~~~~~~l~~~--g~~~~---~~~spIvpv~ig--------~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rl  372 (396)
T d2bwna1         306 QQMHAKVLKMRLKAL--GMPII---DHGSHIVPVVIG--------DPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERL  372 (396)
T ss_dssp             HHHHHHHHHHHHHHH--TCCBC---CCSSSCEEEECC--------CHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEE
T ss_pred             HHHHHHHHHHHHHhc--CCCcC---CCCCCEEEEEeC--------CHHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeE
Confidence            667778888887775  22221   123445555542        2344566777755 6899886542     123579


Q ss_pred             EEeCCCCCcHHHHHHHHHHHHHH
Q 011777          451 RIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       451 Ri~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      ||+++..+|++|||+++++|+++
T Consensus       373 Ri~lsa~ht~edId~l~~~L~~i  395 (396)
T d2bwna1         373 RFTPSPVHDLKQIDGLVHAMDLL  395 (396)
T ss_dssp             EECCCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEeCccCCHHHHHHHHHHHHHh
Confidence            99999999999999999999975

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.95  E-value=1.2e-26  Score=232.45  Aligned_cols=352  Identities=13%  Similarity=0.074  Sum_probs=223.0

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhc-----cccccccCChHHHHHHHHHHhhC--CCCCCEEEEeCChHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLL-----QHATTIYLHHAIADFAEALASKM--PGNLKVVYFVNSGTEA  167 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~-----~~~~~~~~~~~~~~l~~~La~~~--~~~~~~v~~~~sGseA  167 (477)
                      +..+|||..|.+...+ .+.+.+.+++.+.++..     .|....+..+.+..+++.+.+..  +.+.++|++|+|++++
T Consensus        28 ~~~~i~l~~G~P~~~~-~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~a  106 (403)
T d1wsta1          28 TSDVISLAGGLPAPET-FPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQA  106 (403)
T ss_dssp             SSSCEECCCCCCCGGG-SCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHH
T ss_pred             CCCcEECCCCCCCccc-cCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHH
Confidence            3457888776543221 23456777777766542     23333344556677777777654  3456899999999999


Q ss_pred             HHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc
Q 011777          168 NELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG  247 (477)
Q Consensus       168 ~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~  247 (477)
                      +..+++...  .+++.|++.+++|..+.......+.           .+..++....     +.+........+......
T Consensus       107 l~~~~~~l~--~~gd~v~~~~P~y~~~~~~~~~~g~-----------~~~~v~~~~~-----~~~~~~~~~~~~~~~~~~  168 (403)
T d1wsta1         107 LDLIGRVFL--NPGDPIVVEAPTYLAAIQAFKYYDP-----------EFISIPLDDK-----GMRVDLLEEKLEELRKQG  168 (403)
T ss_dssp             HHHHHHHHC--CTTCEEEEEESCCHHHHHHHHTTCC-----------EEEEEEEETT-----EECHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHh--hcCCccccCCCcchhhhHHHhhccc-----------cceeEeeccc-----CCccccccccchhhhhcc
Confidence            999998653  3678899999999887665543322           1111211110     011111122233333322


Q ss_pred             CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccc---ccCCCcceeeeccccc
Q 011777          248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE---TQGVIPDIVTMAKGIG  324 (477)
Q Consensus       248 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~---~~gv~pDivt~sK~lg  324 (477)
                       ...+.++++.+.+|++| ...+.+.+++|.++|++||++||+||+|..|.+.+...-.+.   .++....+.++||.++
T Consensus       169 -~~~~~~~~~~~p~NPtG-~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  246 (403)
T d1wsta1         169 -KRVKIVYTVSTFQNPAG-VTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILA  246 (403)
T ss_dssp             -CCCCEEEECCSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTC
T ss_pred             -ccccccccccccCCCCC-ccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEccccceec
Confidence             23445555555666667 566889999999999999999999999998877663222222   2333344557999998


Q ss_pred             CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhC--CCcee-e
Q 011777          325 NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERH--DIIGD-V  401 (477)
Q Consensus       325 ~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~--~~~~~-v  401 (477)
                      .|+|+||+++++++++.+.......+.+.+...+.+..+.+.....+.+.+++++.....++.+.+...++  ..+.. .
T Consensus       247 ~G~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~  326 (403)
T d1wsta1         247 PGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTK  326 (403)
T ss_dssp             GGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECC
T ss_pred             CcccccccccchHHHHHHHHHHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEEeC
Confidence            89999999999999987766544455666777777766666544444444444444444444433332222  12222 3


Q ss_pred             eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC------CCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          402 RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH------GNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       402 ~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~------~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      +.-|+++|+++....        ....+.+.|+++||++.|+..+      .+++||+++. .+++++++++++|.++++
T Consensus       327 p~gg~~~~~~~~~~~--------~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~-~~~~~l~~al~rl~~~l~  397 (403)
T d1wsta1         327 PEGGMFVRVTLPEGI--------DTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTY-VPEETIREGVRRLAETIK  397 (403)
T ss_dssp             CSBSSEEEEECCTTC--------CTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCHHHHHHHHHHHHHHHH
T ss_pred             CCceeEEEEECCCCC--------CHHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHH
Confidence            344677788774221        1345778899999999987432      3799998643 589999999999999886


Q ss_pred             h
Q 011777          476 K  476 (477)
Q Consensus       476 ~  476 (477)
                      +
T Consensus       398 ~  398 (403)
T d1wsta1         398 E  398 (403)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.95  E-value=2e-26  Score=226.99  Aligned_cols=328  Identities=14%  Similarity=0.097  Sum_probs=213.3

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAML  173 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~  173 (477)
                      ....+|||.+|.  +++| .+|.+.+++.+.+..+.    .|+++...+|.+.|+++++.+.++|++++|+++++..++.
T Consensus        20 ~p~~~idls~~~--np~~-~p~~~~~a~~~~~~~~~----~Yp~~~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~   92 (355)
T d1lc5a_          20 SPDQLLDFSANI--NPLG-MPVSVKRALIDNLDCIE----RYPDADYFHLHQALARHHQVPASWILAGNGETESIFTVAS   92 (355)
T ss_dssp             CGGGSEECSSCC--CTTC-CCHHHHHHHHHTGGGGG----SCCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHH
T ss_pred             ChhheEEccCCC--CCCC-CCHHHHHHHHHHHHHhc----cCCCCChHHHHHHHHHHhCCCHHHEEecccHHHHHHHHHh
Confidence            344689998764  5687 47899999998776543    2444445688999999988777889999999998887665


Q ss_pred             HHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCee
Q 011777          174 MARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVA  253 (477)
Q Consensus       174 ~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a  253 (477)
                      ..    .++.+++..+.|+.+.........           ++..++.+..  ..+..+     +.+++.+.    .+++
T Consensus        93 ~~----~~~~~~v~~p~~~~~~~~~~~~~~-----------~~~~v~~~~~--~~~~~~-----~~~~~~~~----~~~~  146 (355)
T d1lc5a_          93 GL----KPRRAMIVTPGFAEYGRALAQSGC-----------EIRRWSLREA--DGWQLT-----DAILEALT----PDLD  146 (355)
T ss_dssp             HH----CCSEEEEEESCCTHHHHHHHHTTC-----------EEEEEECCGG--GTTCCC-----TTHHHHCC----TTCC
T ss_pred             hh----ccccccccCCccceeccccccccc-----------cceeeeeecc--CCccce-----eeeeeccc----cccc
Confidence            32    344556667777655433322221           2233332211  112211     22333332    3455


Q ss_pred             EEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cccCCCcceeeeccccc-CccceEE
Q 011777          254 GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQGVIPDIVTMAKGIG-NGLPLGA  331 (477)
Q Consensus       254 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~gv~pDivt~sK~lg-~G~pig~  331 (477)
                      +|++.+.+|++|. ..+.+.+++|.++|++|++++|.||+|..|...+...... ...+....+.++||+++ .|+|+||
T Consensus       147 ~v~l~nP~NPtG~-~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~  225 (355)
T d1lc5a_         147 CLFLCTPNNPTGL-LPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGY  225 (355)
T ss_dssp             EEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEE
T ss_pred             eeeeecccCcccc-cchhhhhhhhhhhccccccccccccceeeeeeecccccccccccccceeecccccccccccccccc
Confidence            5555544677774 5688999999999999999999999999887655222211 11222233447999999 7999999


Q ss_pred             EEeCHH-HHHhhcccccccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEE
Q 011777          332 VVTTPE-IANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVG  409 (477)
Q Consensus       332 v~~~~~-~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~  409 (477)
                      ++++++ +.+.+..  ...+++.+.+++.++.++++.... .+..+++++..+++.+.|.    +.+.+...++.|.+++
T Consensus       226 ~i~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~p~~~~f~~  299 (355)
T d1lc5a_         226 LVNSDDAAMARMRR--QQMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALC----QLPLLTVYPGRANYLL  299 (355)
T ss_dssp             EECCCHHHHHHHHH--HSCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHH----TSTTEEECCCSSSEEE
T ss_pred             eeccchhhhHHHHh--hcCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHh----hcCCcEECCCCCEEEE
Confidence            999865 4444442  335678888999888888763111 1233344444444444443    3344444556678888


Q ss_pred             EEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          410 MELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       410 i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      +.+..+          ..++.+.|+++||+++++..+    .+++||+.+   +++|+++++++|++++
T Consensus       300 ~~~~~~----------~~~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~~---~~~e~~~li~aL~~il  355 (355)
T d1lc5a_         300 LRCERE----------DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR---SAAQNERLLAALRNVL  355 (355)
T ss_dssp             EEESCT----------TCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred             EECCCC----------HHHHHHHHHHCCcEEEeCccCCCCCCCEEEEEeC---CHHHHHHHHHHHHHhC
Confidence            877432          234778899999999987543    479999653   7999999999999874

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.94  E-value=4.3e-26  Score=227.86  Aligned_cols=349  Identities=12%  Similarity=-0.008  Sum_probs=217.2

Q ss_pred             CCCCEEEeecCCcccc-cCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHH
Q 011777           93 ENGRRYLDAFAGIVTV-SCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEA  167 (477)
Q Consensus        93 ~dG~~ylD~~~g~~~~-~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA  167 (477)
                      .+|+++||+..|.+.. .+. .++.+.+|+.+.++...  |....+..+.++.+++.+.+..+  .+.++|++++|++++
T Consensus        27 ~~G~~vi~l~~G~P~~~df~-~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~  105 (395)
T d1xi9a_          27 KKGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEA  105 (395)
T ss_dssp             HTTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred             HCCCCeEECCCCCCCCCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchh
Confidence            3588899998876432 232 47889999999987643  22223344556777777776643  456789999999999


Q ss_pred             HHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc
Q 011777          168 NELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG  247 (477)
Q Consensus       168 ~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~  247 (477)
                      +.++++....  +++.|++.+++|+.+...+...+.             ..+.++......+..|    .+++++.+.  
T Consensus       106 ~~~~~~~~~~--~Gd~vlv~~P~y~~~~~~~~~~g~-------------~~v~v~~~~~~~~~~d----~~~~~~~~~--  164 (395)
T d1xi9a_         106 LQLIFGALLD--PGDEILVPGPSYPPYTGLVKFYGG-------------KPVEYRTIEEEDWQPD----IDDIRKKIT--  164 (395)
T ss_dssp             HHHHHHHHCC--TTCEEEEEESCCHHHHHHHHHTTC-------------EEEEEEEEGGGTSEEC----HHHHHHHCC--
T ss_pred             hhhhhhhhcC--CCCEEEEcCCccccchhhhhhcCC-------------EEEEEeccccccccch----HHHHHHhhc--
Confidence            9998876543  567899999999987655444432             1122211111112111    356666554  


Q ss_pred             CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc---cccCCCcceeeeccccc
Q 011777          248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF---ETQGVIPDIVTMAKGIG  324 (477)
Q Consensus       248 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~---~~~gv~pDivt~sK~lg  324 (477)
                       ++....++++| +|++| .+.+++.+++|.++|++||+++|.||+|..+.+.+ .....   ...+-..-+-+|||.++
T Consensus       165 -~~~~~v~l~~P-~NPTG-~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~vi~~~S~SK~~~  240 (395)
T d1xi9a_         165 -DRTKAIAVINP-NNPTG-ALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEG-EHISPGSLTKDVPVIVMNGLSKVYF  240 (395)
T ss_dssp             -TTEEEEEEESS-CTTTC-CCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS-CCCCHHHHCSSSCEEEEEESTTTTC
T ss_pred             -ccccEEEecCC-CCCcc-chhhHHHHHHHHhhhhhcCeeEEeccccccccccc-cccchhhcCCCCCEEEEeCcchhcc
Confidence             23344555555 56666 56789999999999999999999999999876554 22222   11111222337999999


Q ss_pred             -CccceEEEEeC--HHHHHhhcc---cccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 011777          325 -NGLPLGAVVTT--PEIANVMAQ---KIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDII  398 (477)
Q Consensus       325 -~G~pig~v~~~--~~~~~~~~~---~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~  398 (477)
                       .|+|+||+++.  .+.+..+..   .....+++.+.+++.++..+++..  ++++++.++..+..++.+.+...+.+.+
T Consensus       241 ~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~  318 (395)
T d1xi9a_         241 ATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGP--MDYLKEYMKKLKERRDYIYKRLNEIPGI  318 (395)
T ss_dssp             CGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSC--CHHHHHHHHHHHHHHHHHHHHHHTSTTE
T ss_pred             cchhhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence             59999997653  222221111   112245566777888887777632  3344433333333333444444444544


Q ss_pred             eeeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          399 GDVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       399 ~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      ....+. |+++|+++.....   .+  ....+.+.+.++||++.||..+    .+++||+  +..+++++++++++|.++
T Consensus       319 ~~~~p~gg~~~~~~l~~~~~---~~--~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris--~~~~~e~l~eal~rl~~~  391 (395)
T d1xi9a_         319 STTKPQGAFYIFPKIEVGPW---KN--DKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAV--FLPPIEILEEAMDRFEKF  391 (395)
T ss_dssp             ECCCCCBSSEECCEECSCSC---SS--HHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEE--CCSCHHHHHHHHHHHHHH
T ss_pred             eecCCCeeEEEeEECCCCCC---CC--HHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEE--ecCCHHHHHHHHHHHHHH
Confidence            434344 6777888743210   11  1223344556779999998543    4689996  457899999999999999


Q ss_pred             Hhh
Q 011777          474 MSK  476 (477)
Q Consensus       474 l~~  476 (477)
                      +++
T Consensus       392 l~e  394 (395)
T d1xi9a_         392 MKE  394 (395)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            975

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.94  E-value=1.1e-25  Score=226.72  Aligned_cols=351  Identities=10%  Similarity=0.017  Sum_probs=224.3

Q ss_pred             EEeecCCcccccCCCCCHHHHHHHHHHHhhcc-----ccccccCChHHHHHHHHHHhhCCC--C-CCEEEEeCChHHHHH
Q 011777           98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-----HATTIYLHHAIADFAEALASKMPG--N-LKVVYFVNSGTEANE  169 (477)
Q Consensus        98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-----~~~~~~~~~~~~~l~~~La~~~~~--~-~~~v~~~~sGseA~~  169 (477)
                      .||+..|.+.  + ..++.+.+++.+.++...     |....+..+.++.+++++.+..+.  . .++|++|+|+++|+.
T Consensus        28 ~I~L~~G~Pd--~-~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~  104 (418)
T d2r5ea1          28 PLNLGQGFPD--Y-HAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALY  104 (418)
T ss_dssp             CEECSSSCCS--S-CCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred             CEEccCCCCC--C-CCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhh
Confidence            4777776642  2 246889999999887532     222223445677788888776543  3 368999999999999


Q ss_pred             HHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCc------CCCCCCCHHHHHHHHHHH
Q 011777          170 LAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPY------HGSFGSDAARYAQDLQDH  243 (477)
Q Consensus       170 ~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~le~~  243 (477)
                      .+++....  +++.|++.+++|+.+.......+...           ..++.....      ...+..+    .++++..
T Consensus       105 ~~~~~l~~--~gd~vlv~~P~y~~~~~~~~~~g~~~-----------~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~  167 (418)
T d2r5ea1         105 ATIQGHVD--EGDEVIIIEPFFDCYEPMVKAAGGIP-----------RFIPLKPNKTGGTISSADWVLD----NNELEAL  167 (418)
T ss_dssp             HHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEE-----------EEEECEESCCSSCEEGGGEECC----HHHHHHH
T ss_pred             hhhhhccc--cccceeccccccchhhHHHHHcCCeE-----------EEEEecccccccchhhhhhhhh----HHHHhhh
Confidence            99987643  67899999999988765544443211           111100000      0000001    2444443


Q ss_pred             HhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cccCCCcc---eeee
Q 011777          244 IDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQGVIPD---IVTM  319 (477)
Q Consensus       244 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~gv~pD---ivt~  319 (477)
                      ..    ..++++++.+.+|++| ..++++.+++|.++|++||+++|.||+|..|.+.+...... ...+....   +.++
T Consensus       168 ~~----~~~~~~~i~~p~NPtG-~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~  242 (418)
T d2r5ea1         168 FN----EKTKMIIINTPHNPLG-KVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSA  242 (418)
T ss_dssp             CC----TTEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEH
T ss_pred             hh----ccccceecCCcCcccc-ccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecC
Confidence            32    4666666666667777 45689999999999999999999999999886554222111 22232233   3378


Q ss_pred             ccccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhh----c-hhhHHHHHHHHHHHHHHHHHHHHH
Q 011777          320 AKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVI----D-KERRQAHCADVGSHLLGRLRTLQE  393 (477)
Q Consensus       320 sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l----~-~~~~~~~~~~~~~~l~~~L~~l~~  393 (477)
                      ||.++ .|+|+||+++++++++.+.......+++.+.+.+.++.+.+...    + .+++.+++++..+..++.+.+..+
T Consensus       243 SK~~~~pGlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~  322 (418)
T d2r5ea1         243 GKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLA  322 (418)
T ss_dssp             HHHTTCGGGCCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccCCCcccccccccchhhhhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHh
Confidence            99998 69999999999999988876555566777777777666555421    1 134455555544444455544444


Q ss_pred             hCCCceeeeccceeEEEEEeeCCC----CCCccHHHHHHHHHHHH-HcCceeeccCCC---------CCEEEEeCCCCCc
Q 011777          394 RHDIIGDVRGRGLMVGMELVTDRK----EKTPAKAETAVLFEKLR-ELGVLVGKGGLH---------GNVFRIKPPMCFT  459 (477)
Q Consensus       394 ~~~~~~~v~g~g~~~~i~~~~~~~----~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~---------~~~iRi~p~~~~t  459 (477)
                      +.++....+.-|.++|+++..-..    ..........++++.|+ +.||.+.||..+         .++|||+.  ..+
T Consensus       323 ~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~--~~~  400 (418)
T d2r5ea1         323 EVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCF--FKK  400 (418)
T ss_dssp             HTTCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEEC--CSC
T ss_pred             hcCCcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEe--cCC
Confidence            455444444457778888753211    11112223456666665 459999998443         26899975  568


Q ss_pred             HHHHHHHHHHHHHHHh
Q 011777          460 KDDADFLVDALDYSMS  475 (477)
Q Consensus       460 ~e~i~~~l~~l~~~l~  475 (477)
                      +|+|++++++|++.+.
T Consensus       401 ~e~l~~a~~rl~~~lg  416 (418)
T d2r5ea1         401 DENLQKAAEILRKWKG  416 (418)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            9999999999999875

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=3.9e-26  Score=226.00  Aligned_cols=333  Identities=15%  Similarity=0.076  Sum_probs=220.6

Q ss_pred             EEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCCh-HHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHH
Q 011777           98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHH-AIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR  176 (477)
Q Consensus        98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~-~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar  176 (477)
                      .||+..|.+.  ++ .+|.+++|+++.+++..    .|..+ ...+|++.+++++..+.++|++|+|++||+..+++...
T Consensus        27 ~I~ls~g~p~--~~-~p~~i~~al~~~l~~~~----~Y~~~~G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l~   99 (368)
T d1v2da_          27 AVNLGQGFPS--NP-PPPFLLEAVRRALGRQD----QYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV   99 (368)
T ss_dssp             CEECCCCSCS--SC-CCHHHHHHHHHHTTTSC----SCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC
T ss_pred             CEEecCCCCC--CC-CCHHHHHHHHHHhhccc----CCCCCcCCHHHHHHHHhhcccCCcceeeccchHHHHHHHhhccc
Confidence            4787766542  22 57899999998876531    24433 25688888888888888899999999999999998653


Q ss_pred             hccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEE
Q 011777          177 LSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFI  256 (477)
Q Consensus       177 ~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi  256 (477)
                        .+.+.|++.+++|+............           +...+.+... ..+.-|    .+++++.++   +.....++
T Consensus       100 --~~~d~v~~~~p~~~~~~~~~~~~g~~-----------~~~~~~~~~~-~~~~~d----~~~l~~~~~---~~~~~i~~  158 (368)
T d1v2da_         100 --GPGDEVVVLEPFFDVYLPDAFLAGAK-----------ARLVRLDLTP-EGFRLD----LSALEKALT---PRTRALLL  158 (368)
T ss_dssp             --CTTCEEEEEESCCTTHHHHHHHTTCE-----------EEEEECEEET-TEEECC----HHHHHTTCC---TTEEEEEE
T ss_pred             --cccccccccCCcchhhhhHHHhcCCc-----------cceecccccc-ccccCC----HHHHHHhhc---cCceEEEE
Confidence              35678888999998765544443211           1111111000 001111    366666654   33334555


Q ss_pred             ecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc-ccccCCCcceeeecccccC-ccceEEEEe
Q 011777          257 AETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG-FETQGVIPDIVTMAKGIGN-GLPLGAVVT  334 (477)
Q Consensus       257 ~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~-~~~~gv~pDivt~sK~lg~-G~pig~v~~  334 (477)
                      ++| +|++| ...+.+.+++|.++|++||+++|.||+|..+......... ....+....+.++||.++. |+|+||+++
T Consensus       159 ~~p-~NPtG-~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~  236 (368)
T d1v2da_         159 NTP-MNPTG-LVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVG  236 (368)
T ss_dssp             ESS-CTTTC-CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEEC
T ss_pred             cCC-CCccc-ccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeecccccccccccccccccc
Confidence            555 56666 5668899999999999999999999999865443311111 1122223345578888884 899999999


Q ss_pred             CHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEee
Q 011777          335 TPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVT  414 (477)
Q Consensus       335 ~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~  414 (477)
                      ++++.+.+.......+++.+++.+.++.++++....+++.+++++..+..++.+.+...+++.....+..|.++|+++..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~p~g~~~~~~~l~~  316 (368)
T d1v2da_         237 PKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPG  316 (368)
T ss_dssp             CTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEEECTT
T ss_pred             cccccchhhhhhhccccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhcCcEEecCCceeEEEEeCCc
Confidence            99998888776666777888888888888887655555555555554444455555545555433333336777777621


Q ss_pred             CCCCCCccHHHHHHHHHHHHHcCceeeccCC------CCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          415 DRKEKTPAKAETAVLFEKLRELGVLVGKGGL------HGNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~------~~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      .            ...+.|.++||++.|+..      ..+++||+  +..+++++++++++|++++
T Consensus       317 ~------------~~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis--~~~~~e~i~~ai~rL~~~l  368 (368)
T d1v2da_         317 W------------DAFRLVEEARVALIPASAFYLEDPPKDLFRFA--FCKTEEELHLALERLGRVV  368 (368)
T ss_dssp             C------------CHHHHHHHTCEECEEGGGGCSSSCCTTEEEEE--CCSCHHHHHHHHHHHHHHC
T ss_pred             c------------HHHHHHHhCCEEEEechhhCCCCCCCCEEEEE--ecCCHHHHHHHHHHHHHhC
Confidence            1            123457789999998732      24789996  4568999999999999874

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.94  E-value=5e-26  Score=227.33  Aligned_cols=347  Identities=10%  Similarity=0.008  Sum_probs=213.2

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhC--CCCCCEEEEeCChHHHHHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKM--PGNLKVVYFVNSGTEANELA  171 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~--~~~~~~v~~~~sGseA~~~A  171 (477)
                      .|+.+|||..|.+  .+. .+|+|++|+.+.++...+.+..+..+.++.+++++.+..  +.+.++|++|+|+++|+..+
T Consensus        29 ~g~~vi~l~~g~p--df~-~p~~v~~al~~~~~~~~~~Y~~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~  105 (394)
T d1c7na_          29 VGNEVVPLSVADM--EFK-NPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNA  105 (394)
T ss_dssp             CCTTCCCCCSSSC--SSC-CCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHH
T ss_pred             cCCCeEEccCCCC--CCC-CCHHHHHHHHHHHhCCCcCCCCCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhh
Confidence            4677888876664  232 579999999999887543222233445666677666654  34567899999999999999


Q ss_pred             HHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCc-CCCCCCCHHHHHHHHHHHHhccCCC
Q 011777          172 MLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPY-HGSFGSDAARYAQDLQDHIDFGTSG  250 (477)
Q Consensus       172 l~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~le~~i~~~~~~  250 (477)
                      ++....  +++.|++.++.|.+..........             ..+..+... ...+..|    .+.++.++.   ..
T Consensus       106 ~~~~~~--pgd~vi~~~p~~~~~~~~~~~~g~-------------~~v~~~~~~~~~~~~~d----~~~~~~~~~---~~  163 (394)
T d1c7na_         106 VREFTK--PGDGVIIITPVYYPFFMAIKNQER-------------KIIECELLEKDGYYTID----FQKLEKLSK---DK  163 (394)
T ss_dssp             HHHHCC--TTCEEEECSSCCTHHHHHHHTTTC-------------EEEECCCEEETTEEECC----HHHHHHHHT---CT
T ss_pred             hccccc--cccccccccCcccchhhHHhhhhh-------------cccccccccccccccch----hhhhhhhhc---cc
Confidence            986533  678899999999876554444322             112211110 0001111    245555554   24


Q ss_pred             CeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccc-----cCCCcceeeeccccc-
Q 011777          251 KVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFET-----QGVIPDIVTMAKGIG-  324 (477)
Q Consensus       251 ~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~-----~gv~pDivt~sK~lg-  324 (477)
                      +++++++...+|++| .+.+++.+++|.++|++|+++||+||+|..|-+.+........     ......+.++||.++ 
T Consensus       164 ~~~~i~l~~P~NPTG-~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~  242 (394)
T d1c7na_         164 NNKALLFCSPHNPVG-RVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNI  242 (394)
T ss_dssp             TEEEEEEESSBTTTT-BCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTC
T ss_pred             cceEEEecccccccc-eeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccc
Confidence            566666655566777 5668999999999999999999999999988665522111111     122223446899999 


Q ss_pred             CccceEEEEeCH-HHHHhhcccccccCCC-CcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhC-CCceee
Q 011777          325 NGLPLGAVVTTP-EIANVMAQKIQFNTFG-GNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERH-DIIGDV  401 (477)
Q Consensus       325 ~G~pig~v~~~~-~~~~~~~~~~~~~t~~-~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~-~~~~~v  401 (477)
                      .|+|+|++++++ ++.+.+.......+.. .+...++++......  .+++.+..++..++.++.+.++.+.+ +.+...
T Consensus       243 ~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  320 (394)
T d1c7na_         243 AGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKE--CGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAP  320 (394)
T ss_dssp             GGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCC
T ss_pred             cccccccccccChhhhhhhhhhhhhccccccccccchhhhhhhcc--hhhhhcccccccchhhhhhhhhhhccccceeec
Confidence            599999998865 5656555433222222 223333333333332  23334444444444444444443332 233333


Q ss_pred             ecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          402 RGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       402 ~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      .+. |.++|+++....       ....++++.|+++ ||++.||..+    .+++||+  +..++++|++++++|.++++
T Consensus       321 ~p~g~~~~~~~~~~~~-------~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis--~~~~~e~i~eal~rl~~~l~  391 (394)
T d1c7na_         321 LIEGTYLQWIDFRALK-------MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERIN--LAAPSSVIQESLERLNKALK  391 (394)
T ss_dssp             CCSBSSEEEEECGGGC-------CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHH
T ss_pred             CCCceeEEEEECCCCC-------CCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEE--EeCCHHHHHHHHHHHHHHHH
Confidence            444 556677763211       1245677777655 9999987543    3689996  45689999999999999998


Q ss_pred             hC
Q 011777          476 KL  477 (477)
Q Consensus       476 ~l  477 (477)
                      +|
T Consensus       392 ~L  393 (394)
T d1c7na_         392 DL  393 (394)
T ss_dssp             HH
T ss_pred             hc
Confidence            64

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.9e-25  Score=222.52  Aligned_cols=362  Identities=11%  Similarity=0.023  Sum_probs=223.0

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc----ccccccCChHHHHHHHHHHhhCCCCC---CEEEEeCChHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ----HATTIYLHHAIADFAEALASKMPGNL---KVVYFVNSGTEA  167 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~----~~~~~~~~~~~~~l~~~La~~~~~~~---~~v~~~~sGseA  167 (477)
                      +..+||+..|.+.  +. .++.+.+++.+++....    |....+..+.++.+++++.+.++...   ++|++|+|+++|
T Consensus        24 ~~dvI~l~~G~p~--~~-~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~a  100 (418)
T d1w7la_          24 EHDVVNLGQGFPD--FP-PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGA  100 (418)
T ss_dssp             TSCCEECCCCSCS--SC-CCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHH
T ss_pred             CCCCEECCCCCCC--CC-CCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHH
Confidence            4457898887753  32 36789999998886421    22222344566777777776654432   479999999999


Q ss_pred             HHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc
Q 011777          168 NELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG  247 (477)
Q Consensus       168 ~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~  247 (477)
                      +..+++....  +++.|++.+++|+.+.......+.........+. ......  ......+..|    .+++....   
T Consensus       101 l~~~~~~l~~--~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~-~~~~~~--~~~~~~~~~d----~~~~~~~~---  168 (418)
T d1w7la_         101 LFTAFQALVD--EGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPG-PIQNGE--LGSSSNWQLD----PMELAGKF---  168 (418)
T ss_dssp             HHHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEC-C---CC--SEEGGGEECC----HHHHHHHC---
T ss_pred             HHHHHHhhcc--CCceeeccccccchhHHHHHHcCCEeeccccccc-cccccc--cccccCcccc----hhhhhccc---
Confidence            9999886643  6788999999998876544444322110000000 000000  0000001101    12233222   


Q ss_pred             CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc-cccCCCc---ceeeecccc
Q 011777          248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF-ETQGVIP---DIVTMAKGI  323 (477)
Q Consensus       248 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~-~~~gv~p---Divt~sK~l  323 (477)
                       ...++++++...+|++| ...+++.+++|.++|++|++++|.||+|.+|.+.+...... ...+..+   -+.++||.+
T Consensus       169 -~~~~~~i~~~~p~NPtG-~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  246 (418)
T d1w7la_         169 -TSRTKALVLNTPNNPLG-KVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTF  246 (418)
T ss_dssp             -CTTEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHT
T ss_pred             -cccccceeccCcCCccc-ccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccc
Confidence             23555555555556666 56689999999999999999999999999987766333333 2222222   244789999


Q ss_pred             c-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch-----hhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 011777          324 G-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK-----ERRQAHCADVGSHLLGRLRTLQERHDI  397 (477)
Q Consensus       324 g-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~-----~~~~~~~~~~~~~l~~~L~~l~~~~~~  397 (477)
                      + .|+|+||+++++++++.+.......+++.+.+++.++.+++.....     .++..+.++..+..++.+.+...+.++
T Consensus       247 ~~pG~RvG~~v~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~  326 (418)
T d1w7la_         247 SATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGL  326 (418)
T ss_dssp             TCGGGCCEEEECCHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCCCcccccccchhhhhhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhcCC
Confidence            8 5999999999999998887766667788888888888777754211     234444444444444445444444554


Q ss_pred             ceeeeccceeEEEEEeeC-----CCCCCccHHHHHHHHHH-HHHcCceeeccCCC---------CCEEEEeCCCCCcHHH
Q 011777          398 IGDVRGRGLMVGMELVTD-----RKEKTPAKAETAVLFEK-LRELGVLVGKGGLH---------GNVFRIKPPMCFTKDD  462 (477)
Q Consensus       398 ~~~v~g~g~~~~i~~~~~-----~~~~~~~~~~~~~~~~~-l~~~Gv~v~~~~~~---------~~~iRi~p~~~~t~e~  462 (477)
                      ....+.-|.++|+++...     ......+.....++++. |.++||.+.||..+         .++|||+  ++.++++
T Consensus       327 ~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis--~~~~~~~  404 (418)
T d1w7la_         327 KPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFC--FVKDEAT  404 (418)
T ss_dssp             EEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEE--CCCCHHH
T ss_pred             cccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEE--EcCCHHH
Confidence            333344477788887421     00000111122345444 56679999988433         3789996  5678999


Q ss_pred             HHHHHHHHHHHHh
Q 011777          463 ADFLVDALDYSMS  475 (477)
Q Consensus       463 i~~~l~~l~~~l~  475 (477)
                      +++++++|++...
T Consensus       405 l~~a~~rl~~~~~  417 (418)
T d1w7la_         405 LQAMDEKLRKWKV  417 (418)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998653

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=6.8e-25  Score=217.51  Aligned_cols=338  Identities=14%  Similarity=0.093  Sum_probs=215.8

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhC--CCCCCEEEEeCChHHHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKM--PGNLKVVYFVNSGTEANE  169 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~--~~~~~~v~~~~sGseA~~  169 (477)
                      .|+.+||+..|.+.  +. .++.+++++.+.+....  |....+..+.++.+++++.+..  +.+.+++++|+|+++|+.
T Consensus        26 ~G~~vI~l~~G~p~--~~-~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~  102 (375)
T d1o4sa_          26 KGEDVINLTAGEPD--FP-TPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF  102 (375)
T ss_dssp             TTCCCEECCCSSCS--SC-CCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred             CCCCeEECCCcCCC--CC-CCHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHH
Confidence            46678998887653  33 47899999999887643  2222334455666766666543  345678999999999999


Q ss_pred             HHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCC
Q 011777          170 LAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS  249 (477)
Q Consensus       170 ~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~  249 (477)
                      .+++....  +++.|++.+++|..+.........             .....+......+..+    .+.++....    
T Consensus       103 ~~~~~l~~--~gd~vlv~~P~y~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~----~~~~~~~~~----  159 (375)
T d1o4sa_         103 NAFMALLD--PGDEVIVFSPVWVSYIPQIILAGG-------------TVNVVETFMSKNFQPS----LEEVEGLLV----  159 (375)
T ss_dssp             HHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECCGGGTTCCC----HHHHHHTCC----
T ss_pred             HHHHHHhC--CCCEEEEccCccccchhhhhcccc-------------ccccccccccccccch----hHHHHHhhc----
Confidence            98886533  567899999999876444332221             1111111111111111    233433322    


Q ss_pred             CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc---cccCCCcceeeeccccc-C
Q 011777          250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF---ETQGVIPDIVTMAKGIG-N  325 (477)
Q Consensus       250 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~---~~~gv~pDivt~sK~lg-~  325 (477)
                      .+++++++...+|++| ...+.+.+++|.++|++|+++||.||+|..+...+......   +.++...-+.++||.++ .
T Consensus       160 ~~~~~~~l~nP~NPTG-~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~  238 (375)
T d1o4sa_         160 GKTKAVLINSPNNPTG-VVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMT  238 (375)
T ss_dssp             TTEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCG
T ss_pred             cCccEEEEeCCCCCcc-CCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCC
Confidence            3444444444467777 45688999999999999999999999998775544221111   22333344557999999 6


Q ss_pred             ccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc-
Q 011777          326 GLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGR-  404 (477)
Q Consensus       326 G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-  404 (477)
                      |+|+||+++++++++.+.......+...+...+..+...++.. .....+.+.++.+.+.+.|++.    +. ....+. 
T Consensus       239 G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~l~~~----g~-~~~~p~g  312 (375)
T d1o4sa_         239 GWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKM----GV-KFVEPEG  312 (375)
T ss_dssp             GGCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHT----TC-CCCCCSB
T ss_pred             ccccccccccccchhhhhhhhccccccccccchhhhhhhcccc-hhhhHHHHHHHHHHHHHHHHhc----Cc-eEecCCc
Confidence            9999999999999887765544455555566655555544322 1334555566666666666543    32 223334 


Q ss_pred             ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC--CCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          405 GLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH--GNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       405 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      |+++|+++..+         ..+.+.+.+.++||++.||..+  .++|||+.  ..+++++++++++|+++++
T Consensus       313 g~f~~~~~~~~---------~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~--~~~~e~l~~al~rl~~~l~  374 (375)
T d1o4sa_         313 AFYLFFKVRGD---------DVKFCERLLEEKKVALVPGSAFLKPGFVRLSF--ATSIERLTEALDRIEDFLN  374 (375)
T ss_dssp             SSEEEEECSSC---------HHHHHHHHHHHHCEECEEGGGGTCTTEEEEEC--CSCHHHHHHHHHHHHHHHT
T ss_pred             cEEEEEECCCC---------HHHHHHHHHHhCCEEEEEccccCCCCeEEEEE--cCCHHHHHHHHHHHHHHhc
Confidence            66778876321         1233444456779999998543  47899975  5689999999999999885

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=8.7e-26  Score=227.53  Aligned_cols=350  Identities=14%  Similarity=0.058  Sum_probs=225.7

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-----ccccccCChHHHHHHHHHHhhCC---CCCCEEEEeCChH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-----HATTIYLHHAIADFAEALASKMP---GNLKVVYFVNSGT  165 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-----~~~~~~~~~~~~~l~~~La~~~~---~~~~~v~~~~sGs  165 (477)
                      .++.+|||..|.+...+ ...+.+.+++++.++...     |....+..+.++.+++++.+..+   .+.++|++|+|++
T Consensus        36 ~~~~~I~l~~G~Pd~~~-~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~  114 (420)
T d1vp4a_          36 ADKDAISFGGGVPDPET-FPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQ  114 (420)
T ss_dssp             TSTTCEECCCCSCCGGG-SCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHH
T ss_pred             CCCCcEecCCcCCCCcc-CCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchh
Confidence            56678999887653222 234567777777666432     22333344556667777766543   3567899999999


Q ss_pred             HHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHH-
Q 011777          166 EANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHI-  244 (477)
Q Consensus       166 eA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i-  244 (477)
                      +|+..++....  .+++.|++.+++|..+.......+             ...+.+|..   +.+.+    .+.++..+ 
T Consensus       115 ~al~~~~~~~~--~~Gd~Vlv~~P~y~~~~~~~~~~g-------------~~~~~~~~~---~~~~~----~~~l~~~~~  172 (420)
T d1vp4a_         115 QALDLIGKLFL--DDESYCVLDDPAYLGAINAFRQYL-------------ANFVVVPLE---DDGMD----LNVLERKLS  172 (420)
T ss_dssp             HHHHHHHHHHC--CTTCEEEEEESCCHHHHHHHHTTT-------------CEEEEEEEE---TTEEC----HHHHHHHHH
T ss_pred             hhHHHHHHhhh--ccccccccccccccchhHHHHHHh-------------hhccccccc---ccccc----cchhhhhhh
Confidence            99999887543  367889999999987654443332             111111111   01111    23333222 


Q ss_pred             ---hccC-CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc---cccCCCccee
Q 011777          245 ---DFGT-SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF---ETQGVIPDIV  317 (477)
Q Consensus       245 ---~~~~-~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~---~~~gv~pDiv  317 (477)
                         .... ....+++++.+.+|++| ...+.+.+++|.++|++|++++|+||+|.+|.+.+......   ...+...-+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~p~NPtG-~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~  251 (420)
T d1vp4a_         173 EFDKNGKIKQVKFIYVVSNFHNPAG-VTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLN  251 (420)
T ss_dssp             HHHHTTCGGGEEEEEEECSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEE
T ss_pred             hhHHHhhccccceeeEecCCCCccc-hhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEe
Confidence               1111 22344555555566677 55789999999999999999999999999887766222222   1223322333


Q ss_pred             eecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch----hhHHHHHHHHHHHHHHHHHHHHH
Q 011777          318 TMAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK----ERRQAHCADVGSHLLGRLRTLQE  393 (477)
Q Consensus       318 t~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~----~~~~~~~~~~~~~l~~~L~~l~~  393 (477)
                      +++|.++.|+|+||+++++++++.+.......+.+.+.+.++++...++....    ++..+.+++..+.+.+.|.+...
T Consensus       252 s~sk~~~~G~RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~  331 (420)
T d1vp4a_         252 TFSKVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFS  331 (420)
T ss_dssp             ESTTTTCGGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             ccccccccccccccccccchhhhhhhhhhhhccccCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhhc
Confidence            57787778999999999999999887665555667778888777777654322    23445566666677777766654


Q ss_pred             hCCCceeeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC------CCEEEEeCCCCCcHHHHHHH
Q 011777          394 RHDIIGDVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH------GNVFRIKPPMCFTKDDADFL  466 (477)
Q Consensus       394 ~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~------~~~iRi~p~~~~t~e~i~~~  466 (477)
                      ..+.+...++. |+++|+++....        ...++.+.|+++||++.||..+      .+++||+++ ..++++++++
T Consensus       332 ~~~g~~~~~p~gg~f~~~~~~~~~--------d~~~~~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~-~~~~e~l~~a  402 (420)
T d1vp4a_         332 DIPGVKWVKSEGGLFIWLTLPEGF--------DTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFC-LPPDEKIVEG  402 (420)
T ss_dssp             TSTTCEECCCSBSSEEEEECCTTC--------CTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECS-SSCHHHHHHH
T ss_pred             cCCCcEEecCCceEEEEEECCCCC--------CHHHHHHHHHHCCeEEEechhhCCCCCCCCEEEEEeC-cCCHHHHHHH
Confidence            44444444454 567788773211        1234667889999999988433      368999764 3578999999


Q ss_pred             HHHHHHHHhh
Q 011777          467 VDALDYSMSK  476 (477)
Q Consensus       467 l~~l~~~l~~  476 (477)
                      +++|.+++++
T Consensus       403 ~~rL~~~l~~  412 (420)
T d1vp4a_         403 IKRLREVVLE  412 (420)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999864

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.94  E-value=5.3e-26  Score=220.63  Aligned_cols=336  Identities=12%  Similarity=0.026  Sum_probs=196.9

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMAR  176 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar  176 (477)
                      .+|||.+..    .++.||+|++|+.++...  +....+.++...+++++++++++.+ ..++|++||||||+.|++.++
T Consensus         3 ~~~~f~s~n----~~g~~P~v~~A~~~a~~~--~~~~~~~~~~~~~l~~~la~~~g~~-~~v~f~~sGt~An~~a~~~~~   75 (345)
T d1v72a1           3 PALGFSSDN----IAGASPEVAQALVKHSSG--QAGPYGTDELTAQVKRKFCEIFERD-VEVFLVPTGTAANALCLSAMT   75 (345)
T ss_dssp             CCCBCSCGG----GCCCCHHHHHHHHHTTSS--CCCSTTCSHHHHHHHHHHHHHHTSC-CEEEEESCHHHHHHHHHHTSC
T ss_pred             CCcCcCCCC----CCCCCHHHHHHHHHHhcc--CccccCCCHHHHHHHHHHHHHHCCC-cEEEECCchHHHHHHHHHHHH
Confidence            468888633    445799999999886432  3333456788999999999999753 479999999999999999765


Q ss_pred             hccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeE
Q 011777          177 LSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAG  254 (477)
Q Consensus       177 ~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~  254 (477)
                      ..  .+.++.. ...|.............         +......+........      ++++++.+...  ....+..
T Consensus        76 ~~--~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~~~~~  137 (345)
T d1v72a1          76 PP--WGNIYCH-PASHINNDECGAPEFFS---------NGAKLMTVDGPAAKLD------IVRLRERTREKVGDVHTTQP  137 (345)
T ss_dssp             CT--TEEEEEC-TTSHHHHSSTTHHHHHT---------TSCEEEECCCGGGCCC------HHHHHHHTTSSTTCTTSCEE
T ss_pred             hc--CCccccc-cccceeeechhhHHHhc---------Cccccccccccccccc------HHHhhhhhcccccccccccc
Confidence            42  2333332 22222211111111000         1111111111111111      47777777522  1234556


Q ss_pred             EEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCC--CcceeeecccccCccceEEE
Q 011777          255 FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV--IPDIVTMAKGIGNGLPLGAV  332 (477)
Q Consensus       255 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv--~pDivt~sK~lg~G~pig~v  332 (477)
                      ++++.++++.+....+.++++++.++|++||+++++|++|+++.+++ ..+.......  ..+..+++|..+++...+..
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (345)
T d1v72a1         138 ACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVS-LGCSPAEMTWKAGVDALSFGATKNGVLAAEAI  216 (345)
T ss_dssp             EEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHH-HTCCTTTTTGGGTCCEEEECCGGGTCSSCEEE
T ss_pred             eeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccc-cccCHHHhhccccccccccCcccccccccccc
Confidence            66666666555567788899999999999999999999999776554 3333333333  34566777777665444444


Q ss_pred             EeC-HHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee-eccceeEEE
Q 011777          333 VTT-PEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV-RGRGLMVGM  410 (477)
Q Consensus       333 ~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g~g~~~~i  410 (477)
                      ... ................+.++ ...++.++...+.+. ..........++.+.+.+...+.+.+... +..+.++++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~aa~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~  294 (345)
T d1v72a1         217 VLFNTSLATEMSYRRKRAGHLSSK-MRFLSAQIDAYLTDD-LWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFC  294 (345)
T ss_dssp             EESSGGGHHHHHHHHHHTTCCCSS-THHHHHHHHHHTSTT-HHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEE
T ss_pred             ccchhhhhhhccccccccccccch-hhHHhhhhHHHHHHh-hhhhhccchhhHHHHHHHHHHhcCCcEeccCCCccEEEE
Confidence            443 33332222211111122222 222222333333332 22223333334444444444455544333 334566666


Q ss_pred             EEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          411 ELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      .+.             ..+.+.|+++|+.+.+.....+.+||+++..+|+||||++++.|+++
T Consensus       295 ~~~-------------~~~~~~L~~~gi~v~~~~~~~~~lR~~~~~~~T~edid~~le~lr~a  344 (345)
T d1v72a1         295 RLD-------------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLA  344 (345)
T ss_dssp             EEC-------------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred             EcC-------------HHHHHHHHHcCCCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            652             24678899999998766555689999999999999999999999875

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=3e-25  Score=215.54  Aligned_cols=337  Identities=14%  Similarity=0.081  Sum_probs=209.7

Q ss_pred             EEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHh
Q 011777           98 YLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARL  177 (477)
Q Consensus        98 ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~  177 (477)
                      .|||.+-+.+.    .+|+|++||.++...   ....+..+...+|+++|+++++.  +.++|++|||+||+.|++.++.
T Consensus         1 ~~~~~~~~~t~----p~p~v~~A~~~a~~g---~~~yg~~p~~~~le~~lA~~~G~--~~~~~~~sGt~A~~~al~a~~~   71 (343)
T d1m6sa_           1 MIDLRSDTVTK----PTEEMRKAMAQAEVG---DDVYGEDPTINELERLAAETFGK--EAALFVPSGTMGNQVSIMAHTQ   71 (343)
T ss_dssp             CEECSCGGGCC----CCHHHHHHHHTCCCC---CGGGTCCHHHHHHHHHHHHHTTC--SEEEEESCHHHHHHHHHHHHCC
T ss_pred             CcccccccCCC----CCHHHHHHHHhhhcC---CcccCCCHHHHHHHHHHHHHHCC--CeEEEeCCHHHHHHHHHHHHhc
Confidence            37887766554    479999999764321   11123568889999999999954  6899999999999999987654


Q ss_pred             ccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeEE
Q 011777          178 STGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAGF  255 (477)
Q Consensus       178 ~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~v  255 (477)
                        ..+.++.....++..............        .+..++...   ...  +    .+.+++.+...  +...+..+
T Consensus        72 --~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~---~~~--~----~~~~~~~i~~~~~~~~~~~~~  132 (343)
T d1m6sa_          72 --RGDEVILEADSHIFWYEVGAMAVLSGV--------MPHPVPGKN---GAM--D----PDDVRKAIRPRNIHFPRTSLI  132 (343)
T ss_dssp             --TTCEEEEETTCHHHHSSTTHHHHHTCC--------EEEEECEET---TEE--C----HHHHHHHSCCSCTTSCCEEEE
T ss_pred             --cCCceeccccccceeeecccccccccc--------eeecccccc---Ccc--C----HHHHHHhhhhhhccccccccc
Confidence              455666666555443332222211110        111111110   001  1    35666666522  23456777


Q ss_pred             EecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccC-ccceEEEEe
Q 011777          256 IAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGN-GLPLGAVVT  334 (477)
Q Consensus       256 i~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~-G~pig~v~~  334 (477)
                      +++..+++.|...++.+++++|.++|++||+++|+|++++++.... ..+.........+..+++|..+. |.+.++++.
T Consensus       133 ~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  211 (343)
T d1m6sa_         133 AIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIA-SGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVG  211 (343)
T ss_dssp             EEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHH-HCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEE
T ss_pred             ccccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccc-cccchhhhccccccccccccccccccccccccc
Confidence            7777666666677889999999999999999999999998775433 22222222223445566666663 577888888


Q ss_pred             CHHHHHhhcccc--cccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEE
Q 011777          335 TPEIANVMAQKI--QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMEL  412 (477)
Q Consensus       335 ~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~  412 (477)
                      ..+.........  .+.+........++......  ......+...++..++.+.+.++...   .........++++++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~  286 (343)
T d1m6sa_         212 DRDFIERARKARKMLGGGMRQAGVLAAAGIIALT--KMVDRLKEDHENARFLALKLKEIGYS---VNPEDVKTNMVILRT  286 (343)
T ss_dssp             CHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHH--HSSTTHHHHHHHHHHHHHHHHHHTCB---CCGGGCCSSEEEEEC
T ss_pred             cHHHHhhhHhhCcccccccchhHHHHHhhhhhhh--hhHHHHHHHHHHHHHhhhHHHHhccC---ccCCCCCceEEEEEe
Confidence            888765554332  22333333333333222222  22333445555556666666655211   111112345666665


Q ss_pred             eeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          413 VTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      ....       ....++.+.|+++||++.+.+  .+.+||+++..+|+||||+++++|+++++++
T Consensus       287 ~~~~-------~~a~~l~~~L~~~Gi~v~~~~--~~~iRi~~~~~~t~edid~~v~~l~~v~~~~  342 (343)
T d1m6sa_         287 DNLK-------VNAHGFIEALRNSGVLANAVS--DTEIRLVTHKDVSRNDIEEALNIFEKLFRKF  342 (343)
T ss_dssp             TTSS-------SCHHHHHHHHHHHTEECEEEE--TTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCc-------ccHHHHHHHHHHCCCEEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            3211       124678999999999998865  6789999999999999999999999999863

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.93  E-value=2.6e-24  Score=216.06  Aligned_cols=354  Identities=11%  Similarity=0.006  Sum_probs=210.4

Q ss_pred             eCCCCEEEeecCCcccccCC-CCCHHHHHHHHHHHhhcc---ccccccCChHHHHHHHHHHhhC--------CCCCCEEE
Q 011777           92 DENGRRYLDAFAGIVTVSCG-HCHPDVLNAIFEQSKLLQ---HATTIYLHHAIADFAEALASKM--------PGNLKVVY  159 (477)
Q Consensus        92 d~dG~~ylD~~~g~~~~~lG-h~~p~v~~Av~~~l~~~~---~~~~~~~~~~~~~l~~~La~~~--------~~~~~~v~  159 (477)
                      +..++.+||+..|....... ...+.+++++.+.++...   |....+..+.++.+++++.+.+        +.+.++|+
T Consensus        26 ~~~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~  105 (412)
T d1bw0a_          26 SPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVV  105 (412)
T ss_dssp             CCSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEE
T ss_pred             CCCCCCcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEE
Confidence            34556788988775432211 135678888888776422   2222334456677777777653        23457899


Q ss_pred             EeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHH
Q 011777          160 FVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQD  239 (477)
Q Consensus       160 ~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (477)
                      +|+|+++|+..+++...  .+++.|++.+++|+++...+...+             ...+.+|......+..+    .++
T Consensus       106 it~G~~~al~~~~~~l~--~~Gd~Vlv~~P~y~~~~~~~~~~G-------------~~~~~v~~~~~~~~~~~----~~~  166 (412)
T d1bw0a_         106 LCSGGSHGILMAITAIC--DAGDYALVPQPGFPHYETVCKAYG-------------IGMHFYNCRPENDWEAD----LDE  166 (412)
T ss_dssp             EESHHHHHHHHHHHHHC--CTTCEEEEEESCCTHHHHHHHHTT-------------CEEEEEEEEGGGTTEEC----HHH
T ss_pred             Eecccccchhhhhhhhh--ccccceeeeeccchhhhhhhhccC-------------ccccccccccccccchh----hHH
Confidence            99999999999998653  367889999999988765543332             22222221111122111    355


Q ss_pred             HHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccc-c---cCCCcc
Q 011777          240 LQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFE-T---QGVIPD  315 (477)
Q Consensus       240 le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~-~---~gv~pD  315 (477)
                      +++.+.    ..++++++...+|++| ...+++.+++|.++|++|+++||+||+|.+|.+.|....... .   ......
T Consensus       167 l~~~~~----~~~~~~~l~np~NPtG-~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~  241 (412)
T d1bw0a_         167 IRRLKD----DKTKLLIVTNPSNPCG-SNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVP  241 (412)
T ss_dssp             HHHHCC----TTEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCC
T ss_pred             HHhhhh----cccccccccccccccc-ccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccc
Confidence            665543    3455555444455556 456899999999999999999999999999977663222211 1   111112


Q ss_pred             e---eeeccccc-CccceEEEEeCHH------HHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 011777          316 I---VTMAKGIG-NGLPLGAVVTTPE------IANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLL  385 (477)
Q Consensus       316 i---vt~sK~lg-~G~pig~v~~~~~------~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~  385 (477)
                      .   .++||.++ .|+|+||+++++.      ++...... ...+.+.+...++++.+.+.. ..+++.+.+++.....+
T Consensus       242 ~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r  319 (412)
T d1bw0a_         242 RVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRV-GMLVCGPCTVVQAALGEALLN-TPQEHLDQIVAKIEESA  319 (412)
T ss_dssp             EEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHH-HHHHTCSCHHHHHHHHHHHHS-SCHHHHHHHHHHHHHHH
T ss_pred             cccccccCccCccCCCCcccccccchhhcchhhhhhhccc-cccccCCchhhhhhccccccc-ccccccccccchhHHHH
Confidence            2   25899999 5999999998643      22222211 122334445555554444432 12333444444444444


Q ss_pred             HHHHHHHHhCCCceeeecc-ceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC--CCEEEEeCCCCCcHH
Q 011777          386 GRLRTLQERHDIIGDVRGR-GLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH--GNVFRIKPPMCFTKD  461 (477)
Q Consensus       386 ~~L~~l~~~~~~~~~v~g~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~--~~~iRi~p~~~~t~e  461 (477)
                      +.+.+...+...+....+. |.++|+.+.......   .....++++.|+ +.||.+.||..+  .+++||+  ++.+++
T Consensus       320 ~~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~~~---~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis--~~~~~e  394 (412)
T d1bw0a_         320 MYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRD---IKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLT--TTRPVE  394 (412)
T ss_dssp             HHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSS---CCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEE--CCSCHH
T ss_pred             HHHHHHHHHhcCceecCCCCceEEEEeCChhhcCC---CCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEE--EcCCHH
Confidence            4444443333333333344 567777774211110   011345666665 469999998543  3789996  567899


Q ss_pred             HHHHHHHHHHHHHhh
Q 011777          462 DADFLVDALDYSMSK  476 (477)
Q Consensus       462 ~i~~~l~~l~~~l~~  476 (477)
                      ++++++++|++++++
T Consensus       395 ~l~eal~Rl~~~l~~  409 (412)
T d1bw0a_         395 VYREAVERIKAFCQR  409 (412)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999999875

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=7.7e-24  Score=208.75  Aligned_cols=340  Identities=10%  Similarity=0.004  Sum_probs=204.9

Q ss_pred             EeecCCcccccCCCCCHHHHHHHHHHHhhccc--cccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHHHHHHHHH
Q 011777           99 LDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH--ATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEANELAMLM  174 (477)
Q Consensus        99 lD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~--~~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA~~~Al~~  174 (477)
                      |+|..|-+.  +. .+|.|.+|+.+.++...+  ....+ .+.++.+++++.++++  .+.++|++|+|+++++..++..
T Consensus         2 ~~~~~~~~d--f~-~p~~i~eal~~~~~~~~~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~   77 (361)
T d1d2fa_           2 LPFTISDMD--FA-TAPCIIEALNQRLMHGVFGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQ   77 (361)
T ss_dssp             EECCSSSCS--SC-CCHHHHHHHHHHHTTCCCCCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHH
T ss_pred             cCcCCCCCC--CC-CCHHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhh
Confidence            555554442  33 579999999998875432  11122 3556777777777654  4567899999999999988875


Q ss_pred             HHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCc-CCCCCCCHHHHHHHHHHHHhccCCCCee
Q 011777          175 ARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPY-HGSFGSDAARYAQDLQDHIDFGTSGKVA  253 (477)
Q Consensus       175 ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~le~~i~~~~~~~~a  253 (477)
                      ..  ..++.|++.+++|.++.........             ..++++... ...+..|    .+.+++.+.   ..+++
T Consensus        78 l~--~~gd~Vlv~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~~d----~~~~~~~~~---~~~~~  135 (361)
T d1d2fa_          78 WS--ETGEGVVIHTPAYDAFYKAIEGNQR-------------TVMPVALEKQADGWFCD----MGKLEAVLA---KPECK  135 (361)
T ss_dssp             SS--CTTCEEEEEESCCHHHHHHHHHTTC-------------EEEEEECEECSSSEECC----HHHHHHHHT---STTEE
T ss_pred             cc--ccccccccccccccchhHHHHhhcc-------------eEEeecccccccccccc----cccchhhcc---cCCce
Confidence            43  2567899999999876543333221             111111100 0000011    466777665   34676


Q ss_pred             EEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc--CCCcceeeeccccc-CccceE
Q 011777          254 GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ--GVIPDIVTMAKGIG-NGLPLG  330 (477)
Q Consensus       254 ~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~--gv~pDivt~sK~lg-~G~pig  330 (477)
                      ++++.+.+|++| ...+.+.+++|.++|+++|++||+||+|.+|.+.+.....+...  +....+.++||.++ +|+|+|
T Consensus       136 ~i~l~~p~NPTG-~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g  214 (361)
T d1d2fa_         136 IMLLCSPQNPTG-KVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGA  214 (361)
T ss_dssp             EEEEESSCTTTC-CCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCE
T ss_pred             eEEecccccccc-cccchhhhhhhhhhhhhhheeeeecccccccccccccccccccccccccccccccccccccccccce
Confidence            666666677777 56688889999999999999999999999886655222112211  11223346799998 589999


Q ss_pred             EEEeCH-HHHHhhcc-cc-cccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc-
Q 011777          331 AVVTTP-EIANVMAQ-KI-QFNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGR-  404 (477)
Q Consensus       331 ~v~~~~-~~~~~~~~-~~-~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-  404 (477)
                      |++... ...+.... .. ..+..+.+..++++++.+++....  +.....++++.+.+.+.+.+.   .+.+....+. 
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~---~~~~~~~~p~g  291 (361)
T d1d2fa_         215 YGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAA---FPELNWQIPQS  291 (361)
T ss_dssp             EEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCCSB
T ss_pred             eeecchhHHHHHHhhhcccccccccchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhh---cccccccccCc
Confidence            987653 33232221 11 112223345555555555543221  123333333444444443332   2223323333 


Q ss_pred             ceeEEEEEeeCCCCCCccHHHHHHHHHHHHH-cCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          405 GLMVGMELVTDRKEKTPAKAETAVLFEKLRE-LGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       405 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      |.++|+++....       ....++.+.|++ .||++.||..+    .+++||+.  ..+++++++++++|.++++++
T Consensus       292 g~~~~~~l~~~~-------~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~--~~~~e~l~~al~rl~~~l~~l  360 (361)
T d1d2fa_         292 TYLAWLDLRPLN-------IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNA--GCPRSKLEKGVAGLINAIRAV  360 (361)
T ss_dssp             CSEEEEECGGGC-------CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEEC--CSCHHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEEccCCC-------CCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEE--cCCHHHHHHHHHHHHHHHHhc
Confidence            567777763211       124567777755 59999987443    36899974  568999999999999999863

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=2.4e-24  Score=214.56  Aligned_cols=341  Identities=14%  Similarity=0.125  Sum_probs=213.2

Q ss_pred             CCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-ccccccCChHHHHHHHHHHhhCC--CCCCEEEEeCChHHHHH
Q 011777           93 ENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-HATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTEANE  169 (477)
Q Consensus        93 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-~~~~~~~~~~~~~l~~~La~~~~--~~~~~v~~~~sGseA~~  169 (477)
                      ..|+.+||+..|.+.  +. .++.+.+++.+...... |....+..+.++.+++++.+..+  .+.++|++|+|+++++.
T Consensus        25 ~~g~~vi~l~~G~p~--~~-~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~  101 (389)
T d2gb3a1          25 KRGVRIHHLNIGQPD--LK-TPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAIL  101 (389)
T ss_dssp             HTTCEEEECSSCCCC--SC-CCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHH
T ss_pred             HcCCCEEECCCCCCC--CC-CCHHHHHHHHhcCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEeccccccccc
Confidence            358889999877653  32 36778888876543322 22223344566777777777654  34678999999999999


Q ss_pred             HHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCC
Q 011777          170 LAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS  249 (477)
Q Consensus       170 ~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~  249 (477)
                      .+++....  +++.|++.+++|............             ..+..+.........+     +.+...+    .
T Consensus       102 ~~~~~l~~--~gd~V~i~~P~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~~-----~~~~~~~----~  157 (389)
T d2gb3a1         102 FSFAVIAN--PGDEILVLEPFYANYNAFAKIAGV-------------KLIPVTRRMEEGFAIP-----QNLESFI----N  157 (389)
T ss_dssp             HHHHHHCC--TTCEEEEEESCCTHHHHHHHHHTC-------------EEEEEECCGGGTSCCC-----TTGGGGC----C
T ss_pred             cccccccc--CCCeEEEeCCCCccccccccccCc-------------cccccccccccccchh-----hhhhhhc----c
Confidence            98886543  567899999999876554433321             1111111111111100     1122222    2


Q ss_pred             CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcccccc--CCCcceeeecccccC-c
Q 011777          250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQ--GVIPDIVTMAKGIGN-G  326 (477)
Q Consensus       250 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~--gv~pDivt~sK~lg~-G  326 (477)
                      ++++++++...+|++| ...+.+.+++|.++|++||++||.||+|..+.+.+ ........  +...-+.++||.++. |
T Consensus       158 ~~~~~~~l~nP~NPtG-~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~-~~~~~~~~~~~~~~v~~s~sK~~~~~G  235 (389)
T d2gb3a1         158 ERTKGIVLSNPCNPTG-VVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG-EFASALSIESDKVVVIDSVSKKFSACG  235 (389)
T ss_dssp             TTEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCCTTEEEEEESTTTTTCGG
T ss_pred             cCccEEEeCCCCcccc-ccchHHHHHHHHhhcccCCEEEEEecccccccccc-ccccccccccccccccccccccccCcc
Confidence            4566655555566677 45589999999999999999999999999887766 32222111  111223367899985 8


Q ss_pred             cceEEEEeCHH-HHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee-ecc
Q 011777          327 LPLGAVVTTPE-IANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV-RGR  404 (477)
Q Consensus       327 ~pig~v~~~~~-~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g~  404 (477)
                      +|+||++++++ +...+.. ...+.++.+++.+.++.+.+..  .+.+.+.+++..+..++.+.+.+.+++....+ +..
T Consensus       236 lRiG~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~  312 (389)
T d2gb3a1         236 ARVGCLITRNEELISHAMK-LAQGRLAPPLLEQIGSVGLLNL--DDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSG  312 (389)
T ss_dssp             GCCEEEECSCHHHHHHHHH-HHHHSCCCCHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSB
T ss_pred             cceeeeeccchhHHHHHhh-hhhccccccccccccccccccc--cchhcccccccccccchhhhhhhhhhccccccCCCc
Confidence            99999999765 4433332 2335566677777777776642  23444444444444444454444455554333 345


Q ss_pred             ceeEEEEEeeCCCCCCccHHHHHHHHHHHHH------cCceeeccCC-------CCCEEEEeCCCCCcHHHHHHHHHHHH
Q 011777          405 GLMVGMELVTDRKEKTPAKAETAVLFEKLRE------LGVLVGKGGL-------HGNVFRIKPPMCFTKDDADFLVDALD  471 (477)
Q Consensus       405 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~------~Gv~v~~~~~-------~~~~iRi~p~~~~t~e~i~~~l~~l~  471 (477)
                      |.++|+++...         ...++.+.|++      +||.+.|+..       ..+++||+  ++.+++++++++++|.
T Consensus       313 g~~~~~~lp~~---------~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis--~~~~~~~l~~a~~~L~  381 (389)
T d2gb3a1         313 AFYITAELPVE---------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIA--CVLEKDLLSRAIDVLM  381 (389)
T ss_dssp             SSEEEEECSSS---------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEE--CCSCHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCC---------CHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEE--EcCCHHHHHHHHHHHH
Confidence            77788876211         13456666654      3777777632       24689996  4578999999999999


Q ss_pred             HHHhh
Q 011777          472 YSMSK  476 (477)
Q Consensus       472 ~~l~~  476 (477)
                      +++++
T Consensus       382 ~~lk~  386 (389)
T d2gb3a1         382 EGLKM  386 (389)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.92  E-value=3.9e-25  Score=225.64  Aligned_cols=357  Identities=17%  Similarity=0.128  Sum_probs=214.1

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAML  173 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~  173 (477)
                      .|+.+|||.+..++..++|.   ...+    +..+.-  ....++...+|+++++++++  .+.++|++||++||+.|++
T Consensus        40 ~~~~~id~~sd~~t~~~~~~---~~a~----~~~gd~--~y~~~~~~~~le~~~a~l~g--~~~~~~~~sGt~A~~~a~~  108 (465)
T d1ax4a_          40 SSAVYIDLLTDSGTNAMSDH---QWAA----MITGDE--AYAGSRNYYDLKDKAKELFN--YDYIIPAHQGRGAENILFP  108 (465)
T ss_dssp             GGGCSEECSCSSSCCCEEHH---HHHH----HHTCCC--CSSSCHHHHHHHHHHHHHHC--CCEEEEESSHHHHHHHHHH
T ss_pred             ccCeeeecccccchhhhhHH---HHHH----Hhhhhh--hhccChHHHHHHHHHHHHHC--CCEEEECCCcHHHHHHHHH
Confidence            47789999998886655432   2222    222211  11235677899999999984  5799999999999999999


Q ss_pred             HHHhcc-----CCceEEEEccCccCCcccccccc-cCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc
Q 011777          174 MARLST-----GNLGMIALRNAYHGGSSGTIGLT-ALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG  247 (477)
Q Consensus       174 ~ar~~~-----~~~~ii~~~~~yhG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~  247 (477)
                      +++.+.     .+..++.  +.+|+.+....... +....  ............+.+.....+      .++++++|+..
T Consensus       109 ~~~~~g~~~~~~~~~~i~--~~~h~~t~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~d------~~~l~~~i~~~  178 (465)
T d1ax4a_         109 VLLKYKQKEGKAKNPVFI--SNFHFDTTAAHVELNGCKAI--NIVTEKAFDSETYDDWKGDFD------IKKLKENIAQH  178 (465)
T ss_dssp             HHHHHHHHTTCCSSCEEE--ESSCCHHHHHHHHHTTCEEE--ECBCGGGGCTTSCCTTTTCBC------HHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCeEEe--ccchhhhhHHHHHHcCCeee--cccccccCCCCCCCCccCccC------HHHHHHHHHhh
Confidence            997653     1223332  45666554432221 11000  000000000001111122222      58899888865


Q ss_pred             CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc------CccCCCCCCccccccCCC------cc
Q 011777          248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT------GFGRTGSHYWGFETQGVI------PD  315 (477)
Q Consensus       248 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~------gfgr~G~~~~~~~~~gv~------pD  315 (477)
                      .++.+++++++++++++|..+++.++|++|+++|++||++||+||+|.      +.++++ .+++.+..++.      .|
T Consensus       179 ~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~d  257 (465)
T d1ax4a_         179 GADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDP-KYKNATIKEVIFDMYKYAD  257 (465)
T ss_dssp             CGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCG-GGTTCCHHHHHHHHGGGCS
T ss_pred             ccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccc-cccccchhhhccccccccc
Confidence            566789999999999999899999999999999999999999999987      234444 34444333333      46


Q ss_pred             eeeecccccCc-cceEEEEeCHH--HHHhhc----ccccccCCCCc-HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Q 011777          316 IVTMAKGIGNG-LPLGAVVTTPE--IANVMA----QKIQFNTFGGN-PVCSAGGLAVLRVIDKERRQAHCADVGSHLLGR  387 (477)
Q Consensus       316 ivt~sK~lg~G-~pig~v~~~~~--~~~~~~----~~~~~~t~~~~-~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~  387 (477)
                      ++++||..++| +..|+++.+++  +.....    ...+..++++. ..+.++....+.....+++.++..++.+++.++
T Consensus       258 ~~s~s~~k~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~  337 (465)
T d1ax4a_         258 ALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDR  337 (465)
T ss_dssp             EEEEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             eeEeecccCcccccceeEeecchHHHHHhhhccccccccCCCcchhhHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHH
Confidence            78888888864 56677777643  222221    11233344433 333343334444444456677777788889888


Q ss_pred             HHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC---------------CCCCEEEE
Q 011777          388 LRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG---------------LHGNVFRI  452 (477)
Q Consensus       388 L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------------~~~~~iRi  452 (477)
                      |+++  ..+.+....+.+.++......+...+.... ......+.+.+.||.....+               ...+.+||
T Consensus       338 L~~~--g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRl  414 (465)
T d1ax4a_         338 LREA--GIPIQYPTGGHAVFVDCKKLVPQIPGDQFP-AQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRL  414 (465)
T ss_dssp             HHHT--TCCBCSSCCSSEEEEESTTTCTTSCGGGCH-HHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEE
T ss_pred             HHhh--cCccccCCCcceeeeehhhhcCCCccccch-hHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEE
Confidence            8876  234444443333332222111111111111 12334556677788654221               12358999


Q ss_pred             e-CCCCCcHHHHHHHHHHHHHHHh
Q 011777          453 K-PPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       453 ~-p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      + |+..+|+||||+++++|+++++
T Consensus       415 alP~~~~T~eeiD~vv~~l~~v~~  438 (465)
T d1ax4a_         415 TIARRVYTNDHMDYIADALIGLKE  438 (465)
T ss_dssp             ECCTTSSCHHHHHHHHHHHHTTHH
T ss_pred             eCCCCCCCHHHHHHHHHHHHHHHH
Confidence            7 5678899999999999998765

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.92  E-value=2.7e-23  Score=209.77  Aligned_cols=318  Identities=14%  Similarity=0.119  Sum_probs=191.4

Q ss_pred             cCChHHHHHHHHHHhhCC----CCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCC
Q 011777          135 YLHHAIADFAEALASKMP----GNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYP  210 (477)
Q Consensus       135 ~~~~~~~~l~~~La~~~~----~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  210 (477)
                      +..+.++++++.+.++++    .+.++|++|+|+++|++.+++...  .+++.|++.+++|++.........        
T Consensus        85 G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~--~pGd~Vlv~~P~y~~~~~~~~~~~--------  154 (431)
T d1m7ya_          85 GLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA--DPGEAVLIPTPYYPGFDRDLKWRT--------  154 (431)
T ss_dssp             CCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC--CTTCEEEEEESCCTTHHHHTTTTT--------
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhc--CCCCEEEEeCCCchhHHHHHHHhc--------
Confidence            344566677777776643    346799999999999999998653  366889999999987644332221        


Q ss_pred             CCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc--cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEE
Q 011777          211 IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF--GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVC  288 (477)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~--~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill  288 (477)
                          |+..++++......|..|.    +++++.+..  ....++.++++...+|++| ...+++.+++|.++|++||+++
T Consensus       155 ----g~~~v~v~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG-~~~s~~~l~~i~~~a~~~~~~v  225 (431)
T d1m7ya_         155 ----GVEIVPIHCTSSNGFQITE----TALEEAYQEAEKRNLRVKGVLVTNPSNPLG-TTMTRNELYLLLSFVEDKGIHL  225 (431)
T ss_dssp             ----CCEEEEEECCGGGTSCCCH----HHHHHHHHHHHHTTCCEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHHHTCEE
T ss_pred             ----CceeccccccchhcccccH----HHhhhhhhhhhhccCcceEEEecCcccccc-ccccccccccccccccccCcce
Confidence                3333333332223333333    444444431  1233555555554456666 5668999999999999999999


Q ss_pred             EEcCcccCccCCCCCCcccc-c---cCC------Ccc---eeeeccccc-CccceEEEEeCHHHHHhhcccccccCCCCc
Q 011777          289 IADEVQTGFGRTGSHYWGFE-T---QGV------IPD---IVTMAKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGN  354 (477)
Q Consensus       289 I~DEv~~gfgr~G~~~~~~~-~---~gv------~pD---ivt~sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~  354 (477)
                      |+||+|..+.+.+..+..+- .   ...      ...   +-+|||.++ .|+|+||++++++++........ ...+.+
T Consensus       226 I~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~~~~-~~~~~~  304 (431)
T d1m7ya_         226 ISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS-SFGLVS  304 (431)
T ss_dssp             EEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHG-GGSCCC
T ss_pred             eecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHHHHh-cccccc
Confidence            99999998866653222221 0   010      111   236999999 69999999998876544332222 223334


Q ss_pred             HHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeec-cceeEEEEEeeCCCCCCccHHHHHHHHHH
Q 011777          355 PVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRG-RGLMVGMELVTDRKEKTPAKAETAVLFEK  432 (477)
Q Consensus       355 ~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~  432 (477)
                      ...+.+..+.+..... +++.++.+...+..++.+.+..++.++ ..+++ -|+++|+++......  .......++++.
T Consensus       305 ~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi-~~~~p~gg~f~w~~l~~~~~~--~~~~~~~~l~~~  381 (431)
T d1m7ya_         305 SQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGI-SCLNGNAGLFCWVDMRHLLRS--NTFEAEMELWKK  381 (431)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-EECCCCSSSEEEEECGGGSSS--SSHHHHHHHHHH
T ss_pred             ccccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcCCc-EEecCCceeEEEEECcccccc--CcccCHHHHHHH
Confidence            4444444444432111 233333333333333344444444443 33334 477888887432111  122233456666


Q ss_pred             HH-HcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          433 LR-ELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       433 l~-~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      |+ +.||++.||..+    .+++||+.. ..+++++++++++|++++++
T Consensus       382 ll~~~gV~v~PG~~F~~~~~~~~Ri~~a-~~~e~~l~~al~rL~~~l~~  429 (431)
T d1m7ya_         382 IVYEVHLNISPGSSCHCTEPGWFRVCFA-NLPERTLDLAMQRLKAFVGE  429 (431)
T ss_dssp             HHHTSCEECEEGGGGTCSSTTEEEEECS-SSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCEEEEeccccCCCCCCEEEEEeC-cCCHHHHHHHHHHHHHHHHH
Confidence            65 569999997433    478999753 34678999999999999875

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.92  E-value=9.7e-23  Score=205.45  Aligned_cols=318  Identities=13%  Similarity=0.065  Sum_probs=188.0

Q ss_pred             cCChHHHHHHHHHHhhCC----CCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCC
Q 011777          135 YLHHAIADFAEALASKMP----GNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYP  210 (477)
Q Consensus       135 ~~~~~~~~l~~~La~~~~----~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  210 (477)
                      +..+.++++++.+.+.++    .+.++|++|+|+++|++.+++...  .+++.|++..++|+++.......         
T Consensus        84 G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~--~~Gd~Vlv~~P~y~~~~~~~~~~---------  152 (428)
T d1iaya_          84 GLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA--DPGDAFLVPSPYYPAFNRDLRWR---------  152 (428)
T ss_dssp             CCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC--CTTCEEEEESSCCTTHHHHTTTT---------
T ss_pred             chHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhC--CCCCEEEEccCCchHHHHHHHHh---------
Confidence            344667777777777653    345789999999999999988553  35688999999998764432211         


Q ss_pred             CCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc--cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEE
Q 011777          211 IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF--GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVC  288 (477)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~--~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill  288 (477)
                         .|+..++++......+..|.    ++++.+++.  ....++.++++...+|++| ...+.+.+++|.++|++||++|
T Consensus       153 ---~g~~~v~v~~~~~~~~~~d~----~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG-~~~s~~~~~~i~~~a~~~~~~v  224 (428)
T d1iaya_         153 ---TGVQLIPIHCESSNNFKITS----KAVKEAYENAQKSNIKVKGLILTNPSNPLG-TTLDKDTLKSVLSFTNQHNIHL  224 (428)
T ss_dssp             ---TCCEEEEECCCTTTTTCCCH----HHHHHHHHHHHHTTCCEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHTTTCEE
T ss_pred             ---cCCeEEEeeccccccccccc----ccccchhhhhhccCCCceEEEEccCCCccc-ccccccccchhheeeccCcEEE
Confidence               13444444433333444443    344333321  1234555555444455666 5668889999999999999999


Q ss_pred             EEcCcccCccCCCCCCccc-cccC------CCc----ceeeeccccc-CccceEEEEeC-HHHHHhhcccccccCCCCcH
Q 011777          289 IADEVQTGFGRTGSHYWGF-ETQG------VIP----DIVTMAKGIG-NGLPLGAVVTT-PEIANVMAQKIQFNTFGGNP  355 (477)
Q Consensus       289 I~DEv~~gfgr~G~~~~~~-~~~g------v~p----Divt~sK~lg-~G~pig~v~~~-~~~~~~~~~~~~~~t~~~~~  355 (477)
                      |+||+|..+.+.+..+..+ +..+      ..+    -+-+|||.++ .|+|+||+++. +.+.+.+......+  ..+.
T Consensus       225 I~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~~~~--~~~~  302 (428)
T d1iaya_         225 VCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFG--LVST  302 (428)
T ss_dssp             EEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTTS--CCCH
T ss_pred             EecccccccccCcccccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhhhhhhhhccc--cccc
Confidence            9999999887665333222 1111      111    2347999998 59999999985 55666555432222  2333


Q ss_pred             HHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHH
Q 011777          356 VCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR  434 (477)
Q Consensus       356 ~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~  434 (477)
                      ..+.++.+.+..-.. +++.+..++..+..++.+.+..+..++....+..|+|+|+++.....  ........++++.|+
T Consensus       303 ~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~gi~~~~p~gg~f~w~~l~~~~~--~~~~~~~~~l~~~Ll  380 (428)
T d1iaya_         303 QTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLR--ESTFDSEMSLWRVII  380 (428)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCS--SSSHHHHHHHHHHHH
T ss_pred             ccccchhhhhhhhccccccccccccccchhHHHHHHHHHhCCCEEecCCcceEEEEECccccc--cCCCCCHHHHHHHHH
Confidence            444443333321110 22222222222222333333333344322223347788888753211  112223345666665


Q ss_pred             -HcCceeeccCCC----CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          435 -ELGVLVGKGGLH----GNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       435 -~~Gv~v~~~~~~----~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                       +.||++.||..+    .+++||++. ..++++|++++++|++++..
T Consensus       381 ~~~gV~v~PG~~F~~~~~g~~Ris~a-~~~~~~l~~al~Rl~~~l~~  426 (428)
T d1iaya_         381 NDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             HTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred             HhCCEEEEcchhcCCCCCCEEEEEeC-CCCHHHHHHHHHHHHHHHhh
Confidence             469999997433    478999753 35678899999999999863

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2e-23  Score=207.46  Aligned_cols=338  Identities=11%  Similarity=0.002  Sum_probs=218.3

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhcc--ccccccCChHHHHHHHHHHhhCCC--CCC-EEEEeCChHHHHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ--HATTIYLHHAIADFAEALASKMPG--NLK-VVYFVNSGTEANELA  171 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~--~~~~~~~~~~~~~l~~~La~~~~~--~~~-~v~~~~sGseA~~~A  171 (477)
                      ..||+..|.+.  +. .++.+.+++.+.+++..  |....+..+.++.+++.+.+..+.  ..+ .|++|+|+++|+..+
T Consensus        27 ~~i~l~~G~Pd--~~-~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~  103 (382)
T d1u08a_          27 QAINLSQGFPD--FD-GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAA  103 (382)
T ss_dssp             TCEECCCSSCS--SC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHH
T ss_pred             CCEEccCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHH
Confidence            45788877763  32 47889999999887643  223334456677777777776543  233 599999999999999


Q ss_pred             HHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCC
Q 011777          172 MLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGK  251 (477)
Q Consensus       172 l~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~  251 (477)
                      ++....  +++.|++.+++|+...........             ..+..+... ..+..|    ++++++.+.    .+
T Consensus       104 ~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~-~~~~~d----~~~l~~~~~----~~  159 (382)
T d1u08a_         104 ITALVR--NGDEVICFDPSYDSYAPAIALSGG-------------IVKRMALQP-PHFRVD----WQEFAALLS----ER  159 (382)
T ss_dssp             HHHHCC--TTCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECCT-TTCCCC----HHHHHHHCC----TT
T ss_pred             Hhhccc--ccceEEEecccccchhhhhhhccc-------------cceeccccc-ccccCC----HHHHhhhhc----cC
Confidence            986543  667899999999876554433321             111111111 111112    366666554    35


Q ss_pred             eeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc----cccCCCcceeeeccccc-Cc
Q 011777          252 VAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF----ETQGVIPDIVTMAKGIG-NG  326 (477)
Q Consensus       252 ~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~----~~~gv~pDivt~sK~lg-~G  326 (477)
                      ++++++.+.+|++| .+.+.+.+++|.++|+++++++|.||++..+...+......    ...+...-+.++||.++ .|
T Consensus       160 ~~~i~l~~P~NPtG-~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG  238 (382)
T d1u08a_         160 TRLVILNTPHNPSA-TVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTG  238 (382)
T ss_dssp             EEEEEEESSCTTTC-CCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGG
T ss_pred             ccEEEECCCCcccc-cccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCc
Confidence            55555554455666 45688889999999999999999999998664443111111    01112223447899998 69


Q ss_pred             cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccce
Q 011777          327 LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGL  406 (477)
Q Consensus       327 ~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~  406 (477)
                      +|+||+++++++++.+.......+++.+.+.+.++.++++.-  +++.+.+++..+..++.|.+.....++....+.-|+
T Consensus       239 ~RiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~p~gg~  316 (382)
T d1u08a_         239 WKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAE--PEHYLALPDFYRQKRDILVNALNESRLEILPCEGTY  316 (382)
T ss_dssp             GCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC--THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSS
T ss_pred             ccchhhhccchhHHHHHhhhcccccccccccccccccccccc--hHHHHHHHHHHHhhhhhhhhhhccCCcEEecCCceE
Confidence            999999999999988876666677888999999998888743  344444454444445555444433333333333466


Q ss_pred             eEEEEEeeCCCCCCccHHHHHHHHHHH-HHcCceeeccCCC------CCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777          407 MVGMELVTDRKEKTPAKAETAVLFEKL-RELGVLVGKGGLH------GNVFRIKPPMCFTKDDADFLVDALDY  472 (477)
Q Consensus       407 ~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~------~~~iRi~p~~~~t~e~i~~~l~~l~~  472 (477)
                      ++|+++....      .....++.+.| .+.||++.||..+      .+++||+.  ..++|++++++++|++
T Consensus       317 ~~~~~~~~~~------~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~--~~~~e~l~~al~RL~~  381 (382)
T d1u08a_         317 FLLVDYSAVS------TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCF--AKKESTLLAAAERLRQ  381 (382)
T ss_dssp             EEEEECTTTC------CSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEEC--CSCHHHHHHHHHHHTT
T ss_pred             EEEEecCCCC------CCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEE--eCCHHHHHHHHHHHhC
Confidence            7777763210      01134566655 5679999998433      36899975  5689999999999875

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=2.2e-22  Score=197.66  Aligned_cols=288  Identities=16%  Similarity=0.186  Sum_probs=185.1

Q ss_pred             ccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCC
Q 011777          134 IYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQ  213 (477)
Q Consensus       134 ~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~  213 (477)
                      .|+.+...+|+++|+++++.+.++|++|+|++||+..+++.... .|...|++..++|..+.......+.          
T Consensus        52 rYPd~~~~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~~-pgd~~Vl~~~P~y~~~~~~~~~~g~----------  120 (354)
T d1fg7a_          52 RYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCE-PGKDAILYCPPTYGMYSVSAETIGV----------  120 (354)
T ss_dssp             SCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCC-TTTCEEEECSSSCTHHHHHHHHHTC----------
T ss_pred             cCCCCcHHHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhhc-cccccccccccccccchhhhhccCc----------
Confidence            46666667999999999988889999999999999999985532 2334577778888776554433321          


Q ss_pred             CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCc
Q 011777          214 GEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEV  293 (477)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv  293 (477)
                         ..+..+..  ..+..|    .++++..+     .++++|++.+.++++|.+ .+++.++.+.+.++ ++.++|+||.
T Consensus       121 ---~v~~~~~~--~~~~~d----~~~l~~~~-----~~~~~v~~~~pnNPtG~~-~~~~~~~~~~~~~~-~~~~~iidd~  184 (354)
T d1fg7a_         121 ---ECRTVPTL--DNWQLD----LQGISDKL-----DGVKVVYVCSPNNPTGQL-INPQDFRTLLELTR-GKAIVVADEA  184 (354)
T ss_dssp             ---EEEECCCC--TTSCCC----HHHHHTSC-----TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHT-TTCEEEEECT
T ss_pred             ---eeeccccc--cccccc----hhhhhhcc-----cccceeeccCCCccceeE-eeeccccccccccc-cccccccccc
Confidence               12222211  122222    34444433     356777777777777744 57777888877776 5677777887


Q ss_pred             ccCccCCCCCCccccccCCCcc---eeeeccccc-CccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhc
Q 011777          294 QTGFGRTGSHYWGFETQGVIPD---IVTMAKGIG-NGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVID  369 (477)
Q Consensus       294 ~~gfgr~G~~~~~~~~~gv~pD---ivt~sK~lg-~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~  369 (477)
                      +..|.... ...  ......+.   +-||||.+| .|+|+||+++++++++.+....  ..++.+..++.++.+++..-.
T Consensus       185 ~~~f~~~~-~~~--~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~~~i~~l~~~~--~~~~~~~~~~~~a~~~~~~~~  259 (354)
T d1fg7a_         185 YIEFCPQA-SLA--GWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVI--APYPLSTPVADIAAQALSPQG  259 (354)
T ss_dssp             TGGGSGGG-CSG--GGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHS--CSSCSCHHHHHHHHHHTSHHH
T ss_pred             chhhcccc-ccc--hhhcccccceEEeCCccccCCCccccccccccchhhhhhhhhc--CccchhhHHHHHHHHHHhhhc
Confidence            77775433 111  11222233   237999999 7999999999999998886543  345556666655555543211


Q ss_pred             hhh---HHHHHHHHHHHHHHHHHHHHHhCCCcee-eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC
Q 011777          370 KER---RQAHCADVGSHLLGRLRTLQERHDIIGD-VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL  445 (477)
Q Consensus       370 ~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~  445 (477)
                      .+.   ..+++.+..+++.+.+.+    .+.+.. .+..|.|+++++.        +   ..++.+.|+++||++++++.
T Consensus       260 ~~~~~~~~~~~~~~r~~l~~~l~~----~~~~~~~~p~~~~f~~~~~~--------~---~~~~~~~L~~~gIlvr~~~~  324 (354)
T d1fg7a_         260 IVAMRERVAQIIAEREYLIAALKE----IPCVEQVFDSETNYILARFK--------A---SSAVFKSLWDQGIILRDQNK  324 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH----STTEEEECCCSSSEEEEEET--------T---HHHHHHHHHHTTEECEECTT
T ss_pred             cccccccchhhhhHHHHHHHHHHh----CCCcceeCCCCceEEEEeCC--------C---HHHHHHHHHHCCcEEecCCC
Confidence            122   223334444444444443    344433 3456778888772        1   35688899999999988754


Q ss_pred             C---CCEEEEeCCCCCcHHHHHHHHHHHH
Q 011777          446 H---GNVFRIKPPMCFTKDDADFLVDALD  471 (477)
Q Consensus       446 ~---~~~iRi~p~~~~t~e~i~~~l~~l~  471 (477)
                      +   .+++||+.   .+++|+++++++|+
T Consensus       325 ~~~~~~~lRisi---gt~ee~~~~l~aLk  350 (354)
T d1fg7a_         325 QPSLSGCLRITV---GTREESQRVIDALR  350 (354)
T ss_dssp             STTCTTEEEEEC---CCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEe---CCHHHHHHHHHHHh
Confidence            3   48999964   47899999999886

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=9.8e-22  Score=191.46  Aligned_cols=314  Identities=17%  Similarity=0.115  Sum_probs=197.4

Q ss_pred             eCCCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCC---CCCCEEEEeCChHHHH
Q 011777           92 DENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMP---GNLKVVYFVNSGTEAN  168 (477)
Q Consensus        92 d~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~---~~~~~v~~~~sGseA~  168 (477)
                      +..+++.+++..|-  ++++ .++.+++++.+++....  ...|+.....+|++.+++++.   ...++|++|+|+++++
T Consensus        15 ~~~~~d~~~l~~~e--np~~-~p~~i~~~~~~~~~~~~--~~~yp~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l   89 (334)
T d2f8ja1          15 ETEKRDKTYLALNE--NPFP-FPEDLVDEVFRRLNSDA--LRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEII   89 (334)
T ss_dssp             CCCCCCSEECSSCC--CSSC-CCHHHHHHHHHHCCTTG--GGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHH
T ss_pred             cccCCCceEEECCC--CCCC-CCHHHHHHHHHHhhcch--hcCCCCCCcHHHHHHHHHHhcccCCCcceEEecCcchhHH
Confidence            34677788876553  4566 47899999988876532  122333334556666666542   3467899999999999


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      .++++.      .++|++++++|.++.......+.             ..+.+|......+.              +...
T Consensus        90 ~~l~~~------~d~v~i~~P~y~~~~~~~~~~g~-------------~~v~v~~~~~~~~~--------------~~~~  136 (334)
T d2f8ja1          90 YVMMLM------FDRSVFFPPTYSCYRIFAKAVGA-------------KFLEVPLTKDLRIP--------------EVNV  136 (334)
T ss_dssp             HHHHHH------SSEEEECSSCCHHHHHHHHHHTC-------------CEEECCCCTTSCCC--------------CCCC
T ss_pred             HHHhhh------ccccccccccccccccchhccCC-------------cccccccccccccc--------------cccc
Confidence            887652      26899999999887655444422             22222211100000              0011


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeeccccc-Ccc
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIG-NGL  327 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg-~G~  327 (477)
                      ++....++++| +|++|.+. +++   .|.+ +.++++++|+||++.++.... ........+...-+.+|||.++ .|+
T Consensus       137 ~~~~~l~l~nP-~NPtG~~~-s~~---~l~~-~~~~~~~ii~Dd~~~~~~~~~-~~~~~~~~~~~i~~~S~SK~~~~~G~  209 (334)
T d2f8ja1         137 GEGDVVFIPNP-NNPTGHVF-ERE---EIER-ILKTGAFVALDEAYYEFHGES-YVDFLKKYENLAVIRTFSKAFSLAAQ  209 (334)
T ss_dssp             CTTEEEEEESS-CTTTCCCC-CHH---HHHH-HHTTTCEEEEECTTGGGTCCC-CGGGGGTCSSEEEEEESTTTSSCTTT
T ss_pred             ccceEEEeccc-ccccceee-cHH---Hhhc-cccceeEEeecccchhhcccc-cccccccCceEEEEecCccccchhhh
Confidence            22334555566 45556444 443   3444 356899999999997664433 2222222222222447999999 699


Q ss_pred             ceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccce
Q 011777          328 PLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK-ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGL  406 (477)
Q Consensus       328 pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~  406 (477)
                      |+||+++++++++.+....  .+++.+..++.++.+.++..+. ++..+.+.+.++++.+.|+++    + +...++.|.
T Consensus       210 R~G~~~~~~~~i~~l~~~~--~~~~~s~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~----g-~~~~~~~g~  282 (334)
T d2f8ja1         210 RVGYVVASEKFIDAYNRVR--LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM----G-YRITDSRGN  282 (334)
T ss_dssp             CEEEEEECHHHHHHHHHHS--CTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH----T-CEECCCCSS
T ss_pred             hhhhcccchHHHHHHHHhh--cccccchhhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHC----C-CeECCCCce
Confidence            9999999999998887543  3456778888888877764221 233445555555555555543    4 233456788


Q ss_pred             eEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777          407 MVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDY  472 (477)
Q Consensus       407 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~  472 (477)
                      |+++.+.         .....++.+.|+++||++++.   .+++||+.   -+++|+++++++|++
T Consensus       283 f~~~~~~---------~~~~~~~~~~L~~~GI~vr~~---~~~vRis~---g~~ee~~~l~~~l~~  333 (334)
T d2f8ja1         283 FVFVFME---------KEEKERLLEHLRTKNVAVRSF---REGVRITI---GKREENDMILRELEV  333 (334)
T ss_dssp             EEEEECC---------HHHHHHHHHHHHHTTEECEEE---TTEEEEEC---CCHHHHHHHHHHHHH
T ss_pred             EEEEECC---------CCCHHHHHHHHHHCCCEECCC---CCeEEEEc---CCHHHHHHHHHHHhc
Confidence            8777652         224578899999999999754   58999964   478889999998875

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.89  E-value=6.1e-22  Score=196.33  Aligned_cols=336  Identities=15%  Similarity=0.101  Sum_probs=216.4

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccc------cccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT------TIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEA  167 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~------~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA  167 (477)
                      +.+.|||..+      .|..+..|++|+.+.++......      .....+...++++.|+++++.+.++|+|++|||+|
T Consensus         6 ~~~~yld~~~------~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a   79 (381)
T d1elua_           6 ANKTYFNFGG------QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTG   79 (381)
T ss_dssp             TTSEECCTTT------CCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHH
T ss_pred             CCCEEeeCCc------ccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHH
Confidence            4567888543      45577889999998876532111      11223446678889999998877889999999999


Q ss_pred             HHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc
Q 011777          168 NELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG  247 (477)
Q Consensus       168 ~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~  247 (477)
                      +..++...+ ..+++.|++.+..|++...........         .|+.....|........ +.   .+.+++.+   
T Consensus        80 ~~~~~~~l~-~~~g~~i~~~~~~~~s~~~~~~~~~~~---------~g~~~~~v~~~~~~~~~-~~---~~~l~~~i---  142 (381)
T d1elua_          80 CDIVLWGLD-WHQGDEILLTDCEHPGIIAIVQAIAAR---------FGITYRFFPVAATLNQG-DA---AAVLANHL---  142 (381)
T ss_dssp             HHHHHHHSC-CCTTCEEEEETTCCHHHHHHHHHHHHH---------HCCEEEEECCGGGSSSS-CH---HHHHHTTC---
T ss_pred             hhhcchhhh-hcCCceEEEeccccceeeecccccccc---------ccccccccccccccccc-hH---HHHHHhhh---
Confidence            999887543 346677888887776543322221110         12222222221111111 10   12333333   


Q ss_pred             CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHh----CcEEEEcCcccCccCCCCCCccccccCCCcceeeec--c
Q 011777          248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKA----GGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--K  321 (477)
Q Consensus       248 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~----gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K  321 (477)
                       ..+++++++..+++++|.+.+    +++|.++|++|    |+++++|++|+ +|..   .  ++.....+|++++|  |
T Consensus       143 -~~~t~~v~i~~~~n~tG~~~~----~~~I~~l~~~~~~~~~~~~~vD~~~~-~g~~---~--~~~~~~~~D~~~~s~~K  211 (381)
T d1elua_         143 -GPKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSL---P--LDFSRLEVDYYAFTGHK  211 (381)
T ss_dssp             -CTTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTB---C--CCTTTSCCSEEEEESSS
T ss_pred             -cccccccccccccccccccch----hhHHHHHHhhcccccccccccccccc-cccc---c--ccccccccccccccccc
Confidence             367889999998999998888    89999999985    69999999986 4321   2  23334457777654  9


Q ss_pred             cccCccceEEEEeCHHHHHhhcccccc----------------------cCCCCcHHHHHHHHHHHHhhch----hhHHH
Q 011777          322 GIGNGLPLGAVVTTPEIANVMAQKIQF----------------------NTFGGNPVCSAGGLAVLRVIDK----ERRQA  375 (477)
Q Consensus       322 ~lg~G~pig~v~~~~~~~~~~~~~~~~----------------------~t~~~~~~~~aaa~a~l~~l~~----~~~~~  375 (477)
                      .++++.++|++..+++..+.+.+...+                      .....+.....+..++++.+..    +...+
T Consensus       212 ~~~~p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~  291 (381)
T d1elua_         212 WFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQ  291 (381)
T ss_dssp             TTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             cccccchhhHHHhhHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchh
Confidence            998878889999998887765432110                      1112345555566666665543    23456


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCC
Q 011777          376 HCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPP  455 (477)
Q Consensus       376 ~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~  455 (477)
                      +..++.+++.++|+++.. ...+.....++.++.+.+....        ..+.+.+.|.++||.+...+ ..+++|++++
T Consensus       292 ~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~vsf~~~~~~--------~~~~i~~~L~~~gi~v~~~~-~~~~lRis~~  361 (381)
T d1elua_         292 AICQRSEFLWRGLNQLPH-VHCLATSAPQAGLVSFTVDSPL--------GHRAIVQKLEEQRIYLRTIA-DPDCIRACCH  361 (381)
T ss_dssp             HHHHHHHHHHHHHHHSTT-EEESCSSCCSSSEEEEEECSSS--------CHHHHHHHHHHTTEECEEET-TTTEEEEECC
T ss_pred             hhhhHHHHHHHHHhcCCC-eEecCCCCccccEEEEEcCCCC--------CHHHHHHHHHhCCcEEEecC-CCCEEEEecC
Confidence            777777888888777521 1112222345666666653211        13567889999999887543 3578999999


Q ss_pred             CCCcHHHHHHHHHHHHHH
Q 011777          456 MCFTKDDADFLVDALDYS  473 (477)
Q Consensus       456 ~~~t~e~i~~~l~~l~~~  473 (477)
                      ..+|++|||++++.|++.
T Consensus       362 ~~nt~edid~ll~~l~e~  379 (381)
T d1elua_         362 YITDEEEINHLLARLADF  379 (381)
T ss_dssp             TTCCHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999998763

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=5.2e-23  Score=209.85  Aligned_cols=357  Identities=14%  Similarity=0.135  Sum_probs=212.0

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLM  174 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~  174 (477)
                      ++.+||+.+.+++..+.   +....+    +..+..  ....++...+|+++++++++  .+.+++++||++||+.|+++
T Consensus        40 ~~~~idl~sd~~t~~~~---~~~~a~----~~~gd~--~Y~~~~~~~~le~~~a~l~G--~~~~~~~~sGt~A~~~a~~~  108 (467)
T d2v1pa1          40 EDVFIDLLTDSGTGAVT---QSMQAA----MMRGDE--AFSGSRSYYALAESVKNIFG--YQYTIPTHQGRGAEQIYIPV  108 (467)
T ss_dssp             GGCSEECSCCTTCSCCC---HHHHHH----TTSCCC--CSSSCHHHHHHHHHHHHHTC--CSEEEEECSSTTTHHHHHHH
T ss_pred             cceeeeccccccchhhH---HHHHhh----ccccch--hhcCCchHHHHHHHHHHHHC--CCEEEECCCCHHHHHHHHHH
Confidence            44689998887754322   222222    211111  11236778899999999995  47899999999999999998


Q ss_pred             HHhc------cCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          175 ARLS------TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       175 ar~~------~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      ++..      .++...+...+.||+.+.+....++.......... + .............  |    .+++++.++..+
T Consensus       109 ~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~-~-~~~~~~~~~~~~~--d----~~~l~~~i~~~~  180 (467)
T d2v1pa1         109 LIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKE-A-FDTGVRYDFKGNF--D----LEGLERGIEEVG  180 (467)
T ss_dssp             HHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTT-T-TCTTSCCTTTTCB--C----HHHHHHHHHHHC
T ss_pred             HhhccceEecCCCCcEEEEecccccccHHHHHHcCCeeeeccccc-c-cccccccccccCC--C----HHHHHHHHhhcC
Confidence            8653      34556777889999887776666543211110000 0 0000000111111  2    588999887666


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCc---cCCCCCCcccccc---------CCCcce
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGF---GRTGSHYWGFETQ---------GVIPDI  316 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gf---gr~G~~~~~~~~~---------gv~pDi  316 (477)
                      +..++++++|++++.+|..+++.++|++|+++|++||++||+|+++..-   +..+ ..+++...         ....|+
T Consensus       181 ~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~d~  259 (467)
T d2v1pa1         181 PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQ-REAEYKDWTIEQITRETYKYADM  259 (467)
T ss_dssp             GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHH-HCGGGTTSCHHHHHHHHGGGCSE
T ss_pred             ccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhcccccccc-ccccccCCcccccchhhcccCCE
Confidence            6778999999999998889999999999999999999999999998521   1111 11112211         224688


Q ss_pred             eeecccccCccce-EEEEeCHH-HHHhhc-------ccccccCCCCcH-HHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 011777          317 VTMAKGIGNGLPL-GAVVTTPE-IANVMA-------QKIQFNTFGGNP-VCSAGGLAVLRVIDKERRQAHCADVGSHLLG  386 (477)
Q Consensus       317 vt~sK~lg~G~pi-g~v~~~~~-~~~~~~-------~~~~~~t~~~~~-~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~  386 (477)
                      +++|+..+++.+. |+++.+++ +.....       ...+..++++.+ .++++....+.....+++.++..++.+++.+
T Consensus       260 ~s~s~~K~~~~~~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~  339 (467)
T d2v1pa1         260 LAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVD  339 (467)
T ss_dssp             EEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCCCCCceeEEecchhhhhHHHhhcccccccccCcchhhhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHH
Confidence            8887665544344 45555543 322221       112333444444 4444444445555556788888889999999


Q ss_pred             HHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC---------------CCCCEEE
Q 011777          387 RLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG---------------LHGNVFR  451 (477)
Q Consensus       387 ~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------------~~~~~iR  451 (477)
                      +|.+..   ..+....+.+.++.....-......... ......+.+.+.||.....+               ...+.+|
T Consensus       340 ~L~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vR  415 (467)
T d2v1pa1         340 GLEEIG---VVCQQAGGHAAFVDAGKLLPHIPADQFP-AQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLR  415 (467)
T ss_dssp             HHHHTT---CCEEEECSSCEEEEHHHHSTTSCGGGCH-HHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEE
T ss_pred             HHHhcC---CcccCCCccceeecchhhcCCcchhhhh-hHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEE
Confidence            987742   2222222222221111100111111111 12234455567787542110               1236799


Q ss_pred             EeCC-CCCcHHHHHHHHHHHHHHHh
Q 011777          452 IKPP-MCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       452 i~p~-~~~t~e~i~~~l~~l~~~l~  475 (477)
                      |++| ..+|+||||+++++|+++++
T Consensus       416 laip~~~~T~eeiD~vv~~l~~v~~  440 (467)
T d2v1pa1         416 LTIPRATYTQTHMDFIIEAFKHVKE  440 (467)
T ss_dssp             ECCCTTTCCHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCCCHHHHHHHHHHHHHHHH
Confidence            9865 57799999999999999875

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.7e-20  Score=187.46  Aligned_cols=333  Identities=17%  Similarity=0.080  Sum_probs=215.1

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccC-------ChHHHHHHHHHHhhCCC-CCCEEEEeCChHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYL-------HHAIADFAEALASKMPG-NLKVVYFVNSGTEAN  168 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~-------~~~~~~l~~~La~~~~~-~~~~v~~~~sGseA~  168 (477)
                      -|||..++.      -.++.|++++.+.+.+.........       ....++.++.++++++. ..+.++|++++||++
T Consensus        24 iYld~a~~~------~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~   97 (405)
T d1jf9a_          24 AYLDSAASA------QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGI   97 (405)
T ss_dssp             EECCTTTCC------CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHH
T ss_pred             EEEeCcccc------CCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHH
Confidence            488865543      3689999999998876321111111       23456788899999974 346899999999999


Q ss_pred             HHHHHHH--HhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777          169 ELAMLMA--RLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF  246 (477)
Q Consensus       169 ~~Al~~a--r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~  246 (477)
                      ..+++..  ....+++.|++.+..||.............         |+.....|....+.++      ++++++++. 
T Consensus        98 ~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~---------g~~v~~~~~~~~g~~~------~~~~~~~i~-  161 (405)
T d1jf9a_          98 NLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARV---------GAELRVIPLNPDGTLQ------LETLPTLFD-  161 (405)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHH---------TCEEEEECBCTTSCBC------GGGHHHHCC-
T ss_pred             HHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHc---------CcEEEEECCCCCCcCC------HHHHHHhcc-
Confidence            9888752  233466788888888887655443332111         2222222111111111      356666654 


Q ss_pred             cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--cccc
Q 011777          247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIG  324 (477)
Q Consensus       247 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg  324 (477)
                         +++++|.++.+++..|.+.|    +++|.++|+++|+++++|-+|+ .|.     ..++.....+|++++|  |.+|
T Consensus       162 ---~~t~lv~~~~v~~~tG~~~p----i~~i~~~~~~~g~~~~vD~~q~-~g~-----~~id~~~~~~D~~~~s~hK~~G  228 (405)
T d1jf9a_         162 ---EKTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQA-VMH-----HPVDVQALDCDFYVFSGHKLYG  228 (405)
T ss_dssp             ---TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTT-----SCCCHHHHTCSEEEEEGGGTTS
T ss_pred             ---CCcEEEEEecCCCcccccCc----hHHhhhHHHHcCCeeeccccee-ccc-----cccchhhcCCceeecccccccc
Confidence               68999999999999999999    9999999999999999999997 332     1223333457877765  9864


Q ss_pred             CccceEEEEeCHHHHHhhccccccc----------------------CCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 011777          325 NGLPLGAVVTTPEIANVMAQKIQFN----------------------TFGGNPVCSAGGLAVLRVIDKERRQAHCADVGS  382 (477)
Q Consensus       325 ~G~pig~v~~~~~~~~~~~~~~~~~----------------------t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~  382 (477)
                       +..+|+++.+++..+.+.....+.                      .-+.|..+.++..++++.+.+.+ .+++.+...
T Consensus       229 -p~G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g-~~~i~~~~~  306 (405)
T d1jf9a_         229 -PTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALG-LNNIAEYEQ  306 (405)
T ss_dssp             -CSSCEEEEECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHC-HHHHHHHHH
T ss_pred             -CCCceeeeechhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhC-hHHHHHHHH
Confidence             455899999999877654321000                      11346777777778888765432 233444444


Q ss_pred             HHHHHHHHHHHhCCCce--eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC----------CCCEE
Q 011777          383 HLLGRLRTLQERHDIIG--DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL----------HGNVF  450 (477)
Q Consensus       383 ~l~~~L~~l~~~~~~~~--~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----------~~~~i  450 (477)
                      .|.+.+.+.....+.+.  ....++.++.+.+...         ....+...|.++||.+..+..          ..+.+
T Consensus       307 ~L~~~~~~~l~~~~~~~~~~~~~r~~ivsf~~~~~---------~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~i  377 (405)
T d1jf9a_         307 NLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKH---------HAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMC  377 (405)
T ss_dssp             HHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTC---------CHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEE
T ss_pred             HHHHHHHhhhhcCCcccccCCcCcCcEEEEEcCCC---------CHHHHHHHHHHCCcEEEccchhhhhHHHhcCCCCEE
Confidence            44444444444444332  2223344555655211         134577788889999875421          14689


Q ss_pred             EEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          451 RIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       451 Ri~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      ||+++..+|++|||.+++.|+++.+
T Consensus       378 RiS~~~ynt~eDid~l~~~l~~i~r  402 (405)
T d1jf9a_         378 RASLAMYNTHEEVDRLVTGLQRIHR  402 (405)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998875

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.86  E-value=1.7e-19  Score=180.34  Aligned_cols=331  Identities=14%  Similarity=0.077  Sum_probs=213.2

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhccc---cccc----cCChHHHHHHHHHHhhCCCC-CCEEEEeCChHHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH---ATTI----YLHHAIADFAEALASKMPGN-LKVVYFVNSGTEAN  168 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~---~~~~----~~~~~~~~l~~~La~~~~~~-~~~v~~~~sGseA~  168 (477)
                      -|||..++.      ..++.|.+++.+.++....   ....    ......++.++.++++++.+ .+.++|++++++++
T Consensus        24 iYld~a~~~------~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~   97 (408)
T d1t3ia_          24 VYLDNAATS------QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAI   97 (408)
T ss_dssp             EECBTTTCC------CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHH
T ss_pred             EEeeCcccc------CCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHH
Confidence            488866543      3688999999998876421   1110    11245567888999999875 46799999999999


Q ss_pred             HHHHHHH--HhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhc
Q 011777          169 ELAMLMA--RLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDF  246 (477)
Q Consensus       169 ~~Al~~a--r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~  246 (477)
                      ..++...  ....+++.|++.+..|++.............       ..+..++.+.  .....      .+++++++. 
T Consensus        98 n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g-------~~v~~~~~~~--~~~~~------~~~l~~~~~-  161 (408)
T d1t3ia_          98 NLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTG-------AVLKFVQLDE--QESFD------LEHFKTLLS-  161 (408)
T ss_dssp             HHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHC-------CEEEEECBCT--TSSBC------HHHHHHHCC-
T ss_pred             HHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccC-------ceEeeeeccc--ccccc------HHHhhhccC-
Confidence            8877653  2334567788777777765443322211100       0122222211  11111      466777664 


Q ss_pred             cCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--cccc
Q 011777          247 GTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIG  324 (477)
Q Consensus       247 ~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg  324 (477)
                         +++++|.+..+++.+|.+.|    +++|.++|+++|+++|+|-+|+ +|.     ..++.....+|++++|  |.+ 
T Consensus       162 ---~~t~lv~i~~~~~~tG~~~p----~~~i~~~~~~~g~~~ivDa~q~-~g~-----~~id~~~~~~D~~~~s~hK~~-  227 (408)
T d1t3ia_         162 ---EKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APH-----YPLDVQLIDCDWLVASGHKMC-  227 (408)
T ss_dssp             ---TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTT-----SCCCHHHHTCSEEEEEGGGTT-
T ss_pred             ---CCceEEEEecccccccccCc----HHHHhhhhhccCceeeecccee-ccc-----ccccccccCCceEEecccccc-
Confidence               68999999999999999998    9999999999999999999997 432     2234334456888766  864 


Q ss_pred             CccceEEEEeCHHHHHhhccccccc---------------------CCCCcHHHHHHHHHHHHhhch---hhHHHHHHHH
Q 011777          325 NGLPLGAVVTTPEIANVMAQKIQFN---------------------TFGGNPVCSAGGLAVLRVIDK---ERRQAHCADV  380 (477)
Q Consensus       325 ~G~pig~v~~~~~~~~~~~~~~~~~---------------------t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~  380 (477)
                      |+..+|+++.+++..........++                     +.+.|..+.++..++++.+.+   ++..++..++
T Consensus       228 gp~G~g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l  307 (408)
T d1t3ia_         228 APTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVEL  307 (408)
T ss_dssp             SCTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCCCccccccchhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            4556899999999877654322111                     112356666666777776654   3444555555


Q ss_pred             HHHHHHHHHHHHHhCCCceee------eccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC----------
Q 011777          381 GSHLLGRLRTLQERHDIIGDV------RGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG----------  444 (477)
Q Consensus       381 ~~~l~~~L~~l~~~~~~~~~v------~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------  444 (477)
                      .+++.+.+.+    .+.+...      ...+.++.+.+...         ....+...|.++||.+..|.          
T Consensus       308 ~~~l~~~~~~----~~~~~~~~~~~~~~~~~~iv~f~~~~~---------~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~  374 (408)
T d1t3ia_         308 THYLWQGLGQ----IPQLRLYGPNPKHGDRAALASFNVAGL---------HASDVATMVDQDGIAIRSGHHCTQPLHRLF  374 (408)
T ss_dssp             HHHHHHHHHT----CTTEEEESCCGGGSCBCSEEEEEETTB---------CHHHHHHHHHTTTEECBCSCTTCHHHHHHT
T ss_pred             HhHHhhhhcc----CccccccCCCccccCcceEEEEEeCCC---------CHHHHHHHHhhCCcEEecCcccccHHHHhh
Confidence            5555554443    3322111      11234555554211         14567788889999987542          


Q ss_pred             CCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          445 LHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       445 ~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ...+.+||+++..+|++|||++++.|+++++.
T Consensus       375 ~~~g~vRiS~~~ynt~~did~li~~L~~~~~~  406 (408)
T d1t3ia_         375 DASGSARASLYFYNTKEEIDLFLQSLQATIRF  406 (408)
T ss_dssp             TCCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCccEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            12467999999999999999999999998864

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1.3e-20  Score=187.41  Aligned_cols=332  Identities=14%  Similarity=0.131  Sum_probs=195.4

Q ss_pred             EEEeecCCcccccCCCCCHHHHHHHHHHHhhcc-cccc-ccC-------ChHHHHHHHHHHhhCCCCCCEEEEeCChHHH
Q 011777           97 RYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQ-HATT-IYL-------HHAIADFAEALASKMPGNLKVVYFVNSGTEA  167 (477)
Q Consensus        97 ~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~-~~~~-~~~-------~~~~~~l~~~La~~~~~~~~~v~~~~sGseA  167 (477)
                      -|||..++      |..+|.|++||.+.+.+.. +... ...       .+...+++++++++++.+.++|.|++|+|++
T Consensus         4 iYlD~aa~------~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~   77 (391)
T d1p3wa_           4 IYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATES   77 (391)
T ss_dssp             EECBTTTC------CCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHH
T ss_pred             EEeeCccc------cCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHH
Confidence            48887654      3579999999998775421 1111 011       2345677889999999888899999999999


Q ss_pred             HHHHHHHHHh--ccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHh
Q 011777          168 NELAMLMARL--STGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHID  245 (477)
Q Consensus       168 ~~~Al~~ar~--~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~  245 (477)
                      +..++..+..  ..+++.||+.+..|++..........          .|+....+|......++      +++++++++
T Consensus        78 l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~----------~G~~v~~v~~~~~~~~d------~~~~~~~i~  141 (391)
T d1p3wa_          78 DNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLER----------EGFEVTYLAPQRNGIID------LKELEAAMR  141 (391)
T ss_dssp             HHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHH----------TTCEEEEECCCTTSCCC------HHHHHHHCC
T ss_pred             HHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHH----------cCCEEEEeCCCCCCeEc------HHHHHHhCC
Confidence            9988876542  34567888888888765332222111          12222222221111222      477777775


Q ss_pred             ccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeee--cccc
Q 011777          246 FGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTM--AKGI  323 (477)
Q Consensus       246 ~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~--sK~l  323 (477)
                          +++++|+++.+++.+|.+.+    +++|.++|++||+++++|++|+ +|..     .++.....+|++++  .|.+
T Consensus       142 ----~~T~lv~is~~~n~tG~~~~----~~~I~~~~~~~~~~~ivD~~~~-~g~~-----~~d~~~~~~D~~~~s~~k~~  207 (391)
T d1p3wa_         142 ----DDTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQS-VGKL-----PIDLSQLKVDLMSFSGHKIY  207 (391)
T ss_dssp             ----TTEEEEECCSBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTT-BTTB-----CCCTTTSCCSEEEEESTTTT
T ss_pred             ----CCcEEEEEECCCCCCeeECC----HHHHHHHhccCCcEEEEeeccc-cCCc-----cccchhcccccccccccccc
Confidence                68899999999999998888    8999999999999999999997 4321     22333445666654  4775


Q ss_pred             cCccceEEEEeCHHHHHhhccccccc-------CCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHh
Q 011777          324 GNGLPLGAVVTTPEIANVMAQKIQFN-------TFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQER  394 (477)
Q Consensus       324 g~G~pig~v~~~~~~~~~~~~~~~~~-------t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~  394 (477)
                      | +..+|+++++++..........++       +...+.....+....++...+  ....++++++..++.++|.++...
T Consensus       208 g-~~g~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  286 (391)
T d1p3wa_         208 G-PKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEV  286 (391)
T ss_dssp             S-CSSCEEEEECBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTE
T ss_pred             C-CCceEEEEEecchhcccCCcccCCccccCcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHhhcCe
Confidence            3 345788999887665554432221       112222222222233332222  223445555555555554433111


Q ss_pred             CCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC---------------------CCCCEEEEe
Q 011777          395 HDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG---------------------LHGNVFRIK  453 (477)
Q Consensus       395 ~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------------------~~~~~iRi~  453 (477)
                      .-..........++.+.+..      .   ....+...|.  ++.+..|.                     ...+++||+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~l~--~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS  355 (391)
T d1p3wa_         287 YLNGDLEHGAPNILNVSFNY------V---EGESLIMALK--DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFS  355 (391)
T ss_dssp             EECSCTTTSCTTEEEEEETT------S---CHHHHHHHTT--TEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEE
T ss_pred             eecccccccCceEEEEEeCC------C---ChHHHHHHhC--CCEEEccccccCCccchhHHHHHcCCCccccCCEEEEe
Confidence            00000011112222232211      1   1233444443  33332220                     012579999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHhh
Q 011777          454 PPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       454 p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ++..+|++|||++++.|++++++
T Consensus       356 ~~~~nt~edid~l~~~l~~~l~~  378 (391)
T d1p3wa_         356 LGRFTTEEEIDYTIELVRKSIGR  378 (391)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999875

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.85  E-value=1.9e-20  Score=179.35  Aligned_cols=320  Identities=12%  Similarity=0.039  Sum_probs=178.5

Q ss_pred             CCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEcc
Q 011777          110 CGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRN  189 (477)
Q Consensus       110 lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~  189 (477)
                      .| +||+|++|+.++...  +....+..+...+++++++++++.+.++|+||+||||||..|++.+..  +++.++....
T Consensus        10 ~g-~~P~v~eAl~~~~~~--~~~~y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~~--~~~~~~~~~~   84 (340)
T d1svva_          10 VG-MHPKILDLMARDNMT--QHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR--PWEAVIATQL   84 (340)
T ss_dssp             SC-CCHHHHHHHHHHTTC--CCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCC--TTEEEEEETT
T ss_pred             CC-CCHHHHHHHHHHhhc--CCCCCCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHhh--hccccccccc
Confidence            45 699999999886544  222334567788999999999988778999999999999999986654  5556666665


Q ss_pred             CccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHh--ccCCCCeeEEEecccCCCCCee
Q 011777          190 AYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHID--FGTSGKVAGFIAETIQGVGGAV  267 (477)
Q Consensus       190 ~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~--~~~~~~~a~vi~epi~~~~G~~  267 (477)
                      .++.............           ......... ..  .+.    ++..++..  .........+++...++++|.+
T Consensus        85 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~-~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (340)
T d1svva_          85 GHISTHETGAIEATGH-----------KVVTAPCPD-GK--LRV----ADIESALHENRSEHMVIPKLVYISNTTEVGTQ  146 (340)
T ss_dssp             SHHHHSSTTHHHHTTC-----------CEEEECCTT-SC--CCH----HHHHHHHHHSCSTTSCEEEEEEEESSCTTSCC
T ss_pred             cceeeeecccccccce-----------eeeeccccc-cc--ccc----hhHHHHhhhhhcccCCcceeeeeccccccccc
Confidence            5544332222221110           000000000 00  111    22222222  1112234445555555555544


Q ss_pred             eCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCC-CCccccccCCCcceeeecccccCcc-ceEEEEeCHHHHHhhccc
Q 011777          268 ELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGS-HYWGFETQGVIPDIVTMAKGIGNGL-PLGAVVTTPEIANVMAQK  345 (477)
Q Consensus       268 ~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~-~~~~~~~~gv~pDivt~sK~lg~G~-pig~v~~~~~~~~~~~~~  345 (477)
                       .+.+.+..+.++|+++|.++++|+++.+...... ..+.........++.++++..+.+. ..++..............
T Consensus       147 -~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (340)
T d1svva_         147 -YTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHL  225 (340)
T ss_dssp             -CCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHHH
T ss_pred             -ccHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccccccccchhhhhhhhhh
Confidence             4666788999999999999999999975432210 1111111112234556666666543 334444444333222211


Q ss_pred             --ccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccH
Q 011777          346 --IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAK  423 (477)
Q Consensus       346 --~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~  423 (477)
                        ...++........+++.+.++....+...++...+..++++.|+++    +.....+..+.++.+.+.          
T Consensus       226 ~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g~~~~~p~~~~~v~~~~~----------  291 (340)
T d1svva_         226 IKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEAC----GIRLAWPSASNQLFPILE----------  291 (340)
T ss_dssp             HHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHT----TCCBSSCCSSSEECBEEE----------
T ss_pred             cccccCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcC----CCeeecCCCceEEEEeCC----------
Confidence              2223333444444444444432222344555555556666555543    333223344556655552          


Q ss_pred             HHHHHHHHHHHHcCce----eeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777          424 AETAVLFEKLRELGVL----VGKGGLHGNVFRIKPPMCFTKDDADFLVDALDY  472 (477)
Q Consensus       424 ~~~~~~~~~l~~~Gv~----v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~  472 (477)
                         ......|.+++..    ..+.  ..+++||+++..+|++|||+++++|++
T Consensus       292 ---~~~~~~l~~~~~~~~~~~~~~--~~~~vR~s~~~~~t~edid~~l~~l~~  339 (340)
T d1svva_         292 ---NTMIAELNNDFDMYTVEPLKD--GTCIMRLCTSWATEEKECHRFVEVLKR  339 (340)
T ss_dssp             ---HHHHHHHTTTEECEEEEEETT--TEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHhhhhhcccccCC--CCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence               1234455555443    3332  257899999999999999999999986

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.85  E-value=1.9e-20  Score=186.81  Aligned_cols=339  Identities=13%  Similarity=0.020  Sum_probs=189.3

Q ss_pred             EeecCCcccccCCC--CCHHHHHHHHHHHhhcc---ccccccCChHHHHHHHHHHhhCCC--CCCEEEEeC--ChHHHHH
Q 011777           99 LDAFAGIVTVSCGH--CHPDVLNAIFEQSKLLQ---HATTIYLHHAIADFAEALASKMPG--NLKVVYFVN--SGTEANE  169 (477)
Q Consensus        99 lD~~~g~~~~~lGh--~~p~v~~Av~~~l~~~~---~~~~~~~~~~~~~l~~~La~~~~~--~~~~v~~~~--sGseA~~  169 (477)
                      ||+..|.+-..-|.  ..|.|.+|..+.+++..   |....+..+.++++++++.+....  ..+.+..+.  +|+.+..
T Consensus        31 InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~  110 (401)
T d7aata_          31 MNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLR  110 (401)
T ss_dssp             EECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHH
T ss_pred             EEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHH
Confidence            56555543222332  24788888777665532   222234445566666666554321  224454443  3444444


Q ss_pred             HHHHHHHhc-cCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          170 LAMLMARLS-TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       170 ~Al~~ar~~-~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      +...+++.. .+++.|++.+++|+++.......+.             ..+.+|......+..+    .+.+++.+....
T Consensus       111 ~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~-------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  173 (401)
T d7aata_         111 VGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGL-------------QLQAYRYYDPKTCSLD----FTGAMEDISKIP  173 (401)
T ss_dssp             HHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECEETTTTEEC----HHHHHHHHTTSC
T ss_pred             HHHHhhHhhcCCCceEEEecCCCcchhhHHHHcCC-------------eEEEEecccccccccc----HHHHHHHHhcCC
Confidence            333333332 3678899999999988666554432             2222222111111111    355555555333


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc---cccCC---Ccceeeeccc
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF---ETQGV---IPDIVTMAKG  322 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~---~~~gv---~pDivt~sK~  322 (477)
                       +++.++++.+.+|++| .+++++.+++|.++|++|++++|+||+|.+|.+.+......   .....   ...+.++||.
T Consensus       174 -~~~~~iii~~p~NPTG-~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~  251 (401)
T d7aata_         174 -EKSIILLHACAHNPTG-VDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKN  251 (401)
T ss_dssp             -TTCEEEEESSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTT
T ss_pred             -CceEEEEecCCCCCcc-ccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEecccc
Confidence             4556666666677777 56799999999999999999999999999997765111111   11111   2223478999


Q ss_pred             cc-CccceEEEEeCHHHHHhhccc-------ccccCCCCcHHHHHHHHHHHHhhc--h------hhHHHHHHHHHHHHHH
Q 011777          323 IG-NGLPLGAVVTTPEIANVMAQK-------IQFNTFGGNPVCSAGGLAVLRVID--K------ERRQAHCADVGSHLLG  386 (477)
Q Consensus       323 lg-~G~pig~v~~~~~~~~~~~~~-------~~~~t~~~~~~~~aaa~a~l~~l~--~------~~~~~~~~~~~~~l~~  386 (477)
                      ++ .|+|+||++++.++.+.....       ......+.+.+.++++...++.-.  .      +...++++++++.+.+
T Consensus       252 ~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~  331 (401)
T d7aata_         252 MGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVS  331 (401)
T ss_dssp             SCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeccccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99 499999999987766544321       112233455666666655554211  0      1122333333444444


Q ss_pred             HHHHHHHhCCCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHH
Q 011777          387 RLRTLQERHDIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFL  466 (477)
Q Consensus       387 ~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~  466 (477)
                      .|+++.............|+|+|+.+.            .+.+.+.+.++||.+.||+      ||+.+ ..++++|+.+
T Consensus       332 ~L~~~~~~~~~~~~~~~~G~F~~~~ls------------~e~~~~L~~e~gV~~~pg~------Ris~a-~~~~~~i~~l  392 (401)
T d7aata_         332 NLKKEGSSHNWQHITDQIGMFCFTGLK------------PEQVERLTKEFSIYMTKDG------RISVA-GVASSNVGYL  392 (401)
T ss_dssp             HHHHTTCCSCCHHHHHCCSSEEECCCC------------HHHHHHHHHHHCEECCTTC------EEEGG-GCCTTTHHHH
T ss_pred             HHHHhCCCCCcceECCCCeEEEecCCC------------HHHHHHHHHhCCEEECCCc------EEEec-cCCHHHHHHH
Confidence            444331111111112345677775431            1223334466799998863      88653 3678899999


Q ss_pred             HHHHHHHHh
Q 011777          467 VDALDYSMS  475 (477)
Q Consensus       467 l~~l~~~l~  475 (477)
                      .++|+++++
T Consensus       393 a~ai~~v~k  401 (401)
T d7aata_         393 AHAIHQVTK  401 (401)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999998864

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.84  E-value=8.7e-20  Score=182.64  Aligned_cols=339  Identities=12%  Similarity=0.035  Sum_probs=189.3

Q ss_pred             EeecCCcccccCCCC--CHHHHHHHHHHHhh--ccc--cccccCChHHHHHHHHHHhhCC----CCCCEEEEeCChHHHH
Q 011777           99 LDAFAGIVTVSCGHC--HPDVLNAIFEQSKL--LQH--ATTIYLHHAIADFAEALASKMP----GNLKVVYFVNSGTEAN  168 (477)
Q Consensus        99 lD~~~g~~~~~lGh~--~p~v~~Av~~~l~~--~~~--~~~~~~~~~~~~l~~~La~~~~----~~~~~v~~~~sGseA~  168 (477)
                      ||+..|.....-|-.  .|.|.+|.+.....  ..|  ....+..+.++.+++.+.+...    .+...+..+.+|..+.
T Consensus        32 InL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (412)
T d1yaaa_          32 VDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGAL  111 (412)
T ss_dssp             EECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred             EEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHH
Confidence            676666443444533  36777765433322  111  1122333444555555544332    1111233345566666


Q ss_pred             HHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          169 ELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       169 ~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      ..++.+.....+++.|++.+++|..+.......+..             ...+|......+..+    .+.+++.+....
T Consensus       112 ~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~g~~-------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~  174 (412)
T d1yaaa_         112 HISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLK-------------TATYPYWANETKSLD----LNGFLNAIQKAP  174 (412)
T ss_dssp             HHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCC-------------EEEEECEETTTTEEC----HHHHHHHHHHSC
T ss_pred             HHHHHHHhccCCCCEEecccccCchhHHHHHHcCCc-------------eeccccccccccccc----chhhhcccccCC
Confidence            555544434457889999999998876665444321             111111111111112    244555554332


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccc------cccCCCcc---eeee
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGF------ETQGVIPD---IVTM  319 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~------~~~gv~pD---ivt~  319 (477)
                       +.+.++++.+.+|++| ..++++.+++|.++|+++++++|+||+|.+|.+.+....+.      ...+..+.   +.++
T Consensus       175 -~~~~~i~i~~P~NPTG-~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  252 (412)
T d1yaaa_         175 -EGSIFVLHSCAHNPTG-LDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSF  252 (412)
T ss_dssp             -TTCEEEEECSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEEC
T ss_pred             -CceEEEEecCCCCCcc-ccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEec
Confidence             3456666666677777 56799999999999999999999999999997765111111      11222222   3368


Q ss_pred             cccccC-ccceEEEEeCHHHHHhhc-----------ccccccCCCCcHHHHHHHHHHHHhhch--------hhHHHHHHH
Q 011777          320 AKGIGN-GLPLGAVVTTPEIANVMA-----------QKIQFNTFGGNPVCSAGGLAVLRVIDK--------ERRQAHCAD  379 (477)
Q Consensus       320 sK~lg~-G~pig~v~~~~~~~~~~~-----------~~~~~~t~~~~~~~~aaa~a~l~~l~~--------~~~~~~~~~  379 (477)
                      ||.++. |+|+||++++.++.+.+.           ........+.+.+++.++..+++.-..        +.+.+.+++
T Consensus       253 SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  332 (412)
T d1yaaa_         253 AKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITK  332 (412)
T ss_dssp             TTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            999994 999999999865432211           112334556678888877777653211        223344444


Q ss_pred             HHHHHHHHHHHHHHhCCCceeee-ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCC
Q 011777          380 VGSHLLGRLRTLQERHDIIGDVR-GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCF  458 (477)
Q Consensus       380 ~~~~l~~~L~~l~~~~~~~~~v~-g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~  458 (477)
                      +++.+.+.|+++.... .+..+. ..|+|.|+.+.            .+.+.+.+.+.||++.+++      ||+.+ ..
T Consensus       333 ~r~~l~~~L~~~g~~~-~~~~~~~~gG~F~~~~ls------------~e~~~~L~~e~~V~~~~g~------Ris~~-g~  392 (412)
T d1yaaa_         333 MRHALRDHLVKLGTPG-NWDHIVNQCGMFSFTGLT------------PQMVKRLEETHAVYLVASG------RASIA-GL  392 (412)
T ss_dssp             HHHHHHHHHHHHTCSS-CCTHHHHCCSSEEECCCC------------HHHHHHHHHHHCEECCTTS------EEEGG-GC
T ss_pred             HHHHHHHHHHHhCCCC-CCceeCCCceEEEecCcC------------HHHHHHHHHhCCEEECCCC------EEEec-cC
Confidence            4555555554432111 112223 34566554331            1223334467899988753      88653 36


Q ss_pred             cHHHHHHHHHHHHHHHhh
Q 011777          459 TKDDADFLVDALDYSMSK  476 (477)
Q Consensus       459 t~e~i~~~l~~l~~~l~~  476 (477)
                      +++.|+.+.++|+++++.
T Consensus       393 ~~~~i~~l~~ai~~v~k~  410 (412)
T d1yaaa_         393 NQGNVEYVAKAIDEVVRF  410 (412)
T ss_dssp             CTTTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            788999999999998864

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.84  E-value=1.2e-19  Score=181.74  Aligned_cols=323  Identities=11%  Similarity=0.031  Sum_probs=182.5

Q ss_pred             CHHHHHHHHHHHhhc--c--ccccccCChHHHHHHHHHHhhCC----CCCCEEEEeCChHHHHHHHHHHHHh-----ccC
Q 011777          114 HPDVLNAIFEQSKLL--Q--HATTIYLHHAIADFAEALASKMP----GNLKVVYFVNSGTEANELAMLMARL-----STG  180 (477)
Q Consensus       114 ~p~v~~Av~~~l~~~--~--~~~~~~~~~~~~~l~~~La~~~~----~~~~~v~~~~sGseA~~~Al~~ar~-----~~~  180 (477)
                      .|.|.+|........  .  |....+..+.++++++++.+...    .+...+..+.+++.++..+......     ..+
T Consensus        50 ~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p  129 (412)
T d1ajsa_          50 LPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNK  129 (412)
T ss_dssp             CHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCC
T ss_pred             cHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCC
Confidence            467777755443321  1  22222333444455555443321    1122466788888888887765432     246


Q ss_pred             CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEeccc
Q 011777          181 NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETI  260 (477)
Q Consensus       181 ~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi  260 (477)
                      ++.|++.+++|.++.......+...          +...+.++.  ..+..|    .+.+++.+.... +++.++++.+.
T Consensus       130 Gd~Vlv~~P~y~~y~~~~~~~G~~~----------v~~~~~~~~--~~~~~d----~~~~~~~~~~~~-~~~~~il~~~P  192 (412)
T d1ajsa_         130 DTPVYVSSPTWENHNGVFTTAGFKD----------IRSYRYWDT--EKRGLD----LQGFLSDLENAP-EFSIFVLHACA  192 (412)
T ss_dssp             CSCEEEEESCCTHHHHHHHHTTCSC----------EEEEECEET--TTTEEC----HHHHHHHHHHSC-TTCEEEEESSS
T ss_pred             CCEEEEeCCcchhhHHHHHHcCCeE----------EEeeccccc--cccccc----HHHHHHHHHhcc-CCcEEEEecCC
Confidence            7899999999987765554443221          111111111  111111    244444444332 45566666666


Q ss_pred             CCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCC--Cccc-cc---cCCCcceeeecccccC-ccceEEEE
Q 011777          261 QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSH--YWGF-ET---QGVIPDIVTMAKGIGN-GLPLGAVV  333 (477)
Q Consensus       261 ~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~--~~~~-~~---~gv~pDivt~sK~lg~-G~pig~v~  333 (477)
                      +|++| .+++++.+++|.++|++||+++|+||+|.+|.+.+..  .+.. ..   .....-+.++||.++. |+|+||++
T Consensus       193 ~NPTG-~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~  271 (412)
T d1ajsa_         193 HNPTG-TDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLT  271 (412)
T ss_dssp             CTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEE
T ss_pred             CCCcC-CCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCCccccc
Confidence            66777 6679999999999999999999999999998766511  1111 11   1112223468999995 99999999


Q ss_pred             eCHHHHHhhcc-------cccccCCCCcHHHHHHHHHHHHhhc-hh-------hHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 011777          334 TTPEIANVMAQ-------KIQFNTFGGNPVCSAGGLAVLRVID-KE-------RRQAHCADVGSHLLGRLRTLQERHDII  398 (477)
Q Consensus       334 ~~~~~~~~~~~-------~~~~~t~~~~~~~~aaa~a~l~~l~-~~-------~~~~~~~~~~~~l~~~L~~l~~~~~~~  398 (477)
                      ++.+..+.+..       .......+.+.+++.++.+.+.... .+       .+.++++++++.+.+.|++    ++..
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~----~~~~  347 (412)
T d1ajsa_         272 VVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEA----LKTP  347 (412)
T ss_dssp             EECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCS
T ss_pred             cchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCC
Confidence            98654433321       1122333455666666655554211 11       1233333344444444433    3221


Q ss_pred             e---e-eeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          399 G---D-VRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       399 ~---~-v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      .   . ....|+|.++.+.            .+.+.+.+.++||++.|++      ||++. ..++++|+.+.++|++++
T Consensus       348 ~~~~~i~~~~G~F~~~~ls------------~~~v~~L~~e~gV~~vpg~------Ri~~a-g~~~~~i~~~a~aI~~av  408 (412)
T d1ajsa_         348 GTWNHITDQIGMFSFTGLN------------PKQVEYLINQKHIYLLPSG------RINMC-GLTTKNLDYVATSIHEAV  408 (412)
T ss_dssp             SCCHHHHHCCSSEEECCCC------------HHHHHHHHHTTCEECCTTS------EEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred             CCeeeecCCCeEEEecCCC------------HHHHHHHHHhCCEEEeCCC------eEEec-cCCHHHHHHHHHHHHHHH
Confidence            1   1 2335666554331            1234445567899998864      88643 367889999999999999


Q ss_pred             hhC
Q 011777          475 SKL  477 (477)
Q Consensus       475 ~~l  477 (477)
                      +++
T Consensus       409 ~~~  411 (412)
T d1ajsa_         409 TKI  411 (412)
T ss_dssp             HHC
T ss_pred             Hhc
Confidence            875

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=4.5e-20  Score=183.79  Aligned_cols=334  Identities=12%  Similarity=0.027  Sum_probs=191.6

Q ss_pred             EeecCCcccccCCC--CCHHHHHHHHHHHhhcc---ccccccCChHHHHHHHHHHhhCC----CCCCEEEEeCChHHHHH
Q 011777           99 LDAFAGIVTVSCGH--CHPDVLNAIFEQSKLLQ---HATTIYLHHAIADFAEALASKMP----GNLKVVYFVNSGTEANE  169 (477)
Q Consensus        99 lD~~~g~~~~~lGh--~~p~v~~Av~~~l~~~~---~~~~~~~~~~~~~l~~~La~~~~----~~~~~v~~~~sGseA~~  169 (477)
                      ||+..|.+..+-|.  ..|.|++|..+.+++..   |....+..+.++.+++++.+...    .+...+..+.+|+.+..
T Consensus        29 InL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (396)
T d2q7wa1          29 INLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALR  108 (396)
T ss_dssp             EESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHH
T ss_pred             EEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHH
Confidence            68777754444443  35889999887776532   22222344555566666555432    12224556777777777


Q ss_pred             HHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCC
Q 011777          170 LAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTS  249 (477)
Q Consensus       170 ~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~  249 (477)
                      .++.+.......+.|++.+++|.++.......+.             ..+.+|......+..+    ..++++...... 
T Consensus       109 l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~-------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-  170 (396)
T d2q7wa1         109 VAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGL-------------EVREYAYYDAENHTLD----FDALINSLNEAQ-  170 (396)
T ss_dssp             HHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTC-------------EEEEEECEETTTTEEC----HHHHHHHHTTCC-
T ss_pred             HHHHHHhhcccceEEEEecCCCccchHHHHHcCC-------------eeEecccccccccccc----cchHHHHHHHhc-
Confidence            6665544445778899999999888766655432             2222111111111101    244444444333 


Q ss_pred             CCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCc-cc----cccCCCcceeeeccccc
Q 011777          250 GKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW-GF----ETQGVIPDIVTMAKGIG  324 (477)
Q Consensus       250 ~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~-~~----~~~gv~pDivt~sK~lg  324 (477)
                      .++.++++.+.+|++| ..++++.+++|.++|++|++++|+||+|.+|.+.+.... ..    +.......+.++||.++
T Consensus       171 ~~~~~i~~~~P~NPTG-~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~  249 (396)
T d2q7wa1         171 AGDVVLFHGCCHNPTG-IDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFG  249 (396)
T ss_dssp             TTCEEEEECSSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTT
T ss_pred             cCcEEEEecCCcCCcC-eecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhccccccccccccccc
Confidence            3455566555566666 567999999999999999999999999999976541111 11    11222333456899999


Q ss_pred             C-ccceEEEEeCHHHHHhhccc------ccccCC-CCcHHHHHHHHHHHHhhc-h---hh----HHHHHHHHHHHHHHHH
Q 011777          325 N-GLPLGAVVTTPEIANVMAQK------IQFNTF-GGNPVCSAGGLAVLRVID-K---ER----RQAHCADVGSHLLGRL  388 (477)
Q Consensus       325 ~-G~pig~v~~~~~~~~~~~~~------~~~~t~-~~~~~~~aaa~a~l~~l~-~---~~----~~~~~~~~~~~l~~~L  388 (477)
                      . |+|+||++++.+..+.....      ...+++ +.+...+.++.+.+..-. .   ++    ..++++++++.+.+.|
T Consensus       250 ~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L  329 (396)
T d2q7wa1         250 LYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTL  329 (396)
T ss_dssp             CGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHH
T ss_pred             ccCCCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5 99999999987655544321      111233 344555555544443110 0   11    2233333444444444


Q ss_pred             HHHHHhCCCce----eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHH
Q 011777          389 RTLQERHDIIG----DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDAD  464 (477)
Q Consensus       389 ~~l~~~~~~~~----~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~  464 (477)
                      ++    ++...    .....|+|.|+.+.            .+.+.+.+.+.||++.+++      ||+.+ ..++++|+
T Consensus       330 ~~----~~~~~~~~~~~~~~G~F~~~~l~------------~e~~~~L~~e~gV~~~~g~------Ri~~a-~l~~~~i~  386 (396)
T d2q7wa1         330 QE----KGANRDFSFIIKQNGMFSFSGLT------------KEQVLRLREEFGVYAVASG------RVNVA-GMTPDNMA  386 (396)
T ss_dssp             HH----TTCCSCCTHHHHCCSSEEECCCC------------HHHHHHHHHHHCEECCTTC------EEEGG-GCCTTTHH
T ss_pred             HH----hCCCCCcceecCCCeEEEeeCCC------------HHHHHHHHHhCCEEECCCC------EEEec-CCCHHHHH
Confidence            43    33211    13445777776441            1223334456799988764      88754 35788999


Q ss_pred             HHHHHHHHHH
Q 011777          465 FLVDALDYSM  474 (477)
Q Consensus       465 ~~l~~l~~~l  474 (477)
                      ++.++|.+++
T Consensus       387 ~~~~ai~~v~  396 (396)
T d2q7wa1         387 PLCEAIVAVL  396 (396)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999998874

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.83  E-value=1.1e-19  Score=178.51  Aligned_cols=325  Identities=14%  Similarity=0.146  Sum_probs=183.7

Q ss_pred             CCCCHHHHHHHHHHHhhcc---cccc-c----cCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCc
Q 011777          111 GHCHPDVLNAIFEQSKLLQ---HATT-I----YLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNL  182 (477)
Q Consensus       111 Gh~~p~v~~Av~~~l~~~~---~~~~-~----~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~  182 (477)
                      |.-+|++++|+.+..+...   +... .    ...+....+.++++++++  .+.+++|+||++|+.+++....  .+++
T Consensus        12 ~~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g--~e~~~~t~g~t~a~~~~~~al~--~~gd   87 (364)
T d2e7ja1          12 GKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLG--CDVARVTNGAREAKFAVMHSLA--KKDA   87 (364)
T ss_dssp             CCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTT--SSEEEEESSHHHHHHHHHHHHC--CTTC
T ss_pred             CcCCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHhC--cCEEEEECcHHHHHHHHHHHHh--CCCc
Confidence            4567899998876433211   0000 0    012356778999999995  4789999999999999998553  3567


Q ss_pred             eEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc-CCCCeeEEEecccC
Q 011777          183 GMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG-TSGKVAGFIAETIQ  261 (477)
Q Consensus       183 ~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~-~~~~~a~vi~epi~  261 (477)
                      .||+.+++|+.....+...+.           .+..++..+  ...+..|    +++++++++.. +..++++|+++.++
T Consensus        88 ~Vi~~~~~h~s~~~~~~~~g~-----------~v~~v~~~~--~~~~~i~----~~~l~~~i~~~~k~~~~~lv~i~~~~  150 (364)
T d2e7ja1          88 WVVMDENCHYSSYVAAERAGL-----------NIALVPKTD--YPDYAIT----PENFAQTIEETKKRGEVVLALITYPD  150 (364)
T ss_dssp             EEEEETTCCHHHHHHHHHTTC-----------EEEEECCCC--TTTCCCC----HHHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred             EEEeecccccccchHHHhccc-----------eEEEeeecc--ccccccC----HHHHHhhhhhhcccCCceEEEeecCC
Confidence            888887777654333222211           122222211  1112222    47888888633 23567888888888


Q ss_pred             CCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCHHHH
Q 011777          262 GVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPEIA  339 (477)
Q Consensus       262 ~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~~~  339 (477)
                      +++|.+.+    +++|.++|++||+++|+||+|+ +|..+   ......+  .|++++|  |.++++-++|++++++++.
T Consensus       151 n~tG~~~~----l~~I~~ia~~~~i~livD~a~~-~g~~~---~~~~~~g--~D~~~~S~~K~~~~~g~~g~l~~~~~~~  220 (364)
T d2e7ja1         151 GNYGNLPD----VKKIAKVCSEYDVPLLVNGAYA-IGRMP---VSLKEIG--ADFIVGSGHKSMAASGPIGVMGMKEEWA  220 (364)
T ss_dssp             TTTCCCCC----HHHHHHHHHTTTCCEEEECTTT-BTTBC---CCHHHHT--CSEEEEEHHHHSSCCSSCEEEEECTTTT
T ss_pred             CCCceeec----chhheeccccccchhhccccch-hhhhh---hcccccc--cceeeeccccccCCCCCEEEEEECHHHH
Confidence            88898877    9999999999999999999996 44322   1122223  5766654  9999755789999999877


Q ss_pred             Hhhccccc----------ccCCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccce-
Q 011777          340 NVMAQKIQ----------FNTFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGL-  406 (477)
Q Consensus       340 ~~~~~~~~----------~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~-  406 (477)
                      +.+.....          +.+..+  ....+..++++.+.+  +.+.+. .+..+++.+.|.++.  ..... ...... 
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~g--~~~~~-~~~~~~~  294 (364)
T d2e7ja1         221 EIVLRRSEKYKNKEVELLGCTARG--ATIITLMASFPHVRERIKRWDEE-VEKARRFAAEMEKLG--IKQLG-DNPHNHD  294 (364)
T ss_dssp             TTTTCBCSSCTTSBGGGTTCCCCS--HHHHHHHHHHHHHHHHGGGHHHH-HHHHHHHHHHHHHTT--CEEES-SSSCCSS
T ss_pred             HHHHhhccccCcccccccccccch--hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcC--CeecC-CCCCCcc
Confidence            66543211          111112  222333344443322  223222 344556666665541  11111 111111 


Q ss_pred             eEEEEEeeCC--CCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          407 MVGMELVTDR--KEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       407 ~~~i~~~~~~--~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ...+......  ..+..  .....+...+.++|+.....+ ....+|++ .+..|++||++++++|++++++
T Consensus       295 ~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~g-~~~~~~~~-~~~~t~edid~~~~~l~ei~~~  362 (364)
T d2e7ja1         295 LMFFHAEVLYEISKKAK--GGRFFLYRELKSRKIHGIKPG-LTRYFKLS-TYGLSDEEVDYVLNAFKEIIEK  362 (364)
T ss_dssp             EEEEECHHHHHHHHHSS--SGGGHHHHHHHHTTEECSCTT-CCSEEEEE-CTTCCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEeccchHHHHHHhh--ccchHHHHHHHhcCCceecCC-CcceEEEe-ccCCCHHHHHHHHHHHHHHHHH
Confidence            1112110000  00000  001134456677777654322 23566765 4667999999999999999875

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=5.8e-19  Score=175.48  Aligned_cols=320  Identities=13%  Similarity=0.028  Sum_probs=183.0

Q ss_pred             CHHHHHHHHHHHhhcc---ccccccCChHHHHHHHHHHhhCCC-CCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEcc
Q 011777          114 HPDVLNAIFEQSKLLQ---HATTIYLHHAIADFAEALASKMPG-NLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRN  189 (477)
Q Consensus       114 ~p~v~~Av~~~l~~~~---~~~~~~~~~~~~~l~~~La~~~~~-~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~  189 (477)
                      .|.|.+|+++.+++..   |....+..+.++.+++.+.+.... .....+.+.+|+.+...++.+.....+++.|++.++
T Consensus        46 ~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p  125 (394)
T d2ay1a_          46 MRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDP  125 (394)
T ss_dssp             CHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred             CHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHHHHhhhcCCceEEEEecc
Confidence            5899999888776532   222233444556666665544322 223556777777777666665544567788999999


Q ss_pred             CccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeC
Q 011777          190 AYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVEL  269 (477)
Q Consensus       190 ~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~  269 (477)
                      +|..+.......+.             ..+.+|......+..+    .+++++...... +++.++++.+.+|++| ..+
T Consensus       126 ~~~~y~~~~~~~g~-------------~~v~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~i~~~~~p~NPTG-~~~  186 (394)
T d2ay1a_         126 TWPNHVSIMNFMGL-------------PVQTYRYFDAETRGVD----FEGMKADLAAAK-KGDMVLLHGCCHNPTG-ANL  186 (394)
T ss_dssp             CCHHHHHHHHHHTC-------------CEEEEECEETTTTEEC----HHHHHHHHHTCC-TTCEEEEESSSCTTTC-CCC
T ss_pred             cccchHHHHHHcCC-------------EEEEecccchhccccc----chhHHHHHhhcc-cCcEEEEeCCCCCCCC-CCC
Confidence            99776554444332             1122111111111111    244555444332 3455666666667777 667


Q ss_pred             CchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCcc-c-c---ccC-CCcceeeecccccC-ccceEEEEeCHHHHHhh
Q 011777          270 APGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWG-F-E---TQG-VIPDIVTMAKGIGN-GLPLGAVVTTPEIANVM  342 (477)
Q Consensus       270 ~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~-~-~---~~g-v~pDivt~sK~lg~-G~pig~v~~~~~~~~~~  342 (477)
                      +++.+++|.++|++|++++|+||+|.+|.+++ .... . .   ..+ ....+.++||.++. |+|+|+++++....+..
T Consensus       187 s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~-~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~  265 (394)
T d2ay1a_         187 TLDQWAEIASILEKTGALPLIDLAYQGFGDGL-EEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATR  265 (394)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEEECCTTSSSCH-HHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHH
T ss_pred             CHHHHHHHHHHhhcceEEEEEeccchhhcccc-cccchhhhhhhhhcccccccccccccccCCcccccchhhchhHHHHH
Confidence            99999999999999999999999999997765 2111 1 0   011 12234468999995 99999999987655443


Q ss_pred             ccc-------ccccCCCCcHHHHHHHHHHHHhh--ch------hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccee
Q 011777          343 AQK-------IQFNTFGGNPVCSAGGLAVLRVI--DK------ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLM  407 (477)
Q Consensus       343 ~~~-------~~~~t~~~~~~~~aaa~a~l~~l--~~------~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~  407 (477)
                      ...       ......+.+...++.+...+..-  ..      +.+.++++++++.+.+.|+++..........+..|+|
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F  345 (394)
T d2ay1a_         266 ELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMF  345 (394)
T ss_dssp             HHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSE
T ss_pred             HHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeeECCCceeE
Confidence            321       11112223333443333333211  00      1233444445555555555443111111123345777


Q ss_pred             EEEEEeeCCCCCCccHHHHHHHHHHH-HHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHH
Q 011777          408 VGMELVTDRKEKTPAKAETAVLFEKL-RELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYS  473 (477)
Q Consensus       408 ~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~  473 (477)
                      +|+.+.             .+.++.| .+.||++.+++      ||+.+ .+++++|+.+.++|.++
T Consensus       346 ~~~~ls-------------~~~~~~L~~~~~V~~~~g~------Ri~~a-~l~~~~i~~l~~ai~~v  392 (394)
T d2ay1a_         346 SRLGAT-------------PEQVKRIKEEFGIYMVGDS------RINIA-GLNDNTIPILARAIIEV  392 (394)
T ss_dssp             EECCCC-------------HHHHHHHHHHHCEECCTTC------EEEGG-GCCTTTHHHHHHHHHHH
T ss_pred             EecCcC-------------HHHHHHHHHhCCEEecCCC------EEEec-CCCHHHHHHHHHHHHHh
Confidence            776541             1234445 56799998863      88754 46889999999988875

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.1e-18  Score=173.06  Aligned_cols=320  Identities=15%  Similarity=0.129  Sum_probs=198.5

Q ss_pred             CHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCC-EEEEeCChHHHHHHHHHHHHhccCCceEEEEccCcc
Q 011777          114 HPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLK-VVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYH  192 (477)
Q Consensus       114 ~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~-~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yh  192 (477)
                      +|+|++|+....  ..|.+. ...+...+..+.|+++++.+.+ .|+|+.|||+|++.++....  .+++++++...+++
T Consensus        31 ~~~Vl~am~~~~--i~HRs~-~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~--~~~~~~~~~~~~~~  105 (388)
T d1h0ca_          31 PPRIMAAGGLQM--IGSMSK-DMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVL--EPGDSFLVGANGIW  105 (388)
T ss_dssp             CHHHHHHHTCCC--CCTTSH-HHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC--CSSCCEEECBSSHH
T ss_pred             CHHHHHHhCcCC--CCCCCH-HHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhh--ccCCceeeecccce
Confidence            788888764211  223222 2245678889999999876433 69999999999999998663  36777888777776


Q ss_pred             CCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCch
Q 011777          193 GGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPG  272 (477)
Q Consensus       193 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~  272 (477)
                      +........... .        ....+.  .+.....  +    .+++++.+..   .+++.+.+..+.+.+|.+.|   
T Consensus       106 ~~~~~~~~~~~~-~--------~~~~~~--~~~~~~~--~----~~~~~~~~~~---~~~~~v~~~~~~n~tG~i~p---  162 (388)
T d1h0ca_         106 GQRAVDIGERIG-A--------RVHPMT--KDPGGHY--T----LQEVEEGLAQ---HKPVLLFLTHGESSTGVLQP---  162 (388)
T ss_dssp             HHHHHHHHHHHC-----------CBCCB--CCTTCCC--C----HHHHHHHHHH---HCCSEEEEESEETTTTEECC---
T ss_pred             eeeecccccccc-c--------cccccc--cCCcccc--c----hHHHHHHhcc---CCcceEEEeeeeeccccccC---
Confidence            653332222110 0        000011  0111111  1    2444444432   35667778888888998888   


Q ss_pred             hHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCHHHHHhhcccc----
Q 011777          273 YLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPEIANVMAQKI----  346 (477)
Q Consensus       273 ~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~~~~~~~~~~----  346 (477)
                       +++|.++|++||+++++|.+|+ +|.     ..++......|++++|  |.+++...+|+++.+++..+.+....    
T Consensus       163 -i~~i~~~~~~~g~~~~vD~~qs-~g~-----~~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~  235 (388)
T d1h0ca_         163 -LDGFGELCHRYKCLLLVDSVAS-LGG-----TPLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPF  235 (388)
T ss_dssp             -CTTHHHHHHTTTCEEEEECTTT-TTT-----SCCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCS
T ss_pred             -HHHHHHHhhcccccceeccccc-ccc-----ccccccccccceecccccccccCCCceEEEeecHHHHHhhhhcccccc
Confidence             8999999999999999999997 332     1234444456777665  88876556788889988776654210    


Q ss_pred             -------------------cccCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc
Q 011777          347 -------------------QFNTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGR  404 (477)
Q Consensus       347 -------------------~~~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~  404 (477)
                                         .......+.....+..++++.+.+   +...++..++.+++++.+.++... ....+...+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~-~~~~~~~~r  314 (388)
T d1h0ca_         236 SFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQ-LFVKDPALR  314 (388)
T ss_dssp             CSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-BSSCSGGGB
T ss_pred             ccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhcCcc-cccCCHHHc
Confidence                               001122445566667777777654   344555666677777776665211 111121111


Q ss_pred             -ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccC--CCCCEEEEe-CCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          405 -GLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGG--LHGNVFRIK-PPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       405 -g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--~~~~~iRi~-p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                       ..++.+.+        |......++...|+++ ||.+..|.  ..++.|||+ +...+|++|||+++++|+++++++
T Consensus       315 s~~i~~~~~--------p~~~~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l  384 (388)
T d1h0ca_         315 LPTVTTVAV--------PAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHC  384 (388)
T ss_dssp             CTTEEEEEC--------CTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHS
T ss_pred             CCeEEEEEC--------CCCCCHHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence             22344444        2222245677777665 99887652  246799998 567789999999999999999864

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=3e-19  Score=177.84  Aligned_cols=336  Identities=15%  Similarity=0.099  Sum_probs=186.9

Q ss_pred             EeecCCcccccCCCC--CHHHHHHHHHHHhhccccccccC-ChHHHHHHHHHHhhC----C--CCCCEEEEeCChHHHHH
Q 011777           99 LDAFAGIVTVSCGHC--HPDVLNAIFEQSKLLQHATTIYL-HHAIADFAEALASKM----P--GNLKVVYFVNSGTEANE  169 (477)
Q Consensus        99 lD~~~g~~~~~lGh~--~p~v~~Av~~~l~~~~~~~~~~~-~~~~~~l~~~La~~~----~--~~~~~v~~~~sGseA~~  169 (477)
                      ||+..|.+..+-|..  .|.|.+|... +.........|. .....+|++.+++++    .  .+.++++.+.+++.+..
T Consensus        29 InL~iG~~~d~~g~~p~~~~V~~A~~~-l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~  107 (397)
T d3tata_          29 VNLSIGLYYNEDGIIPQLQAVAEAEAR-LNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGA  107 (397)
T ss_dssp             EECSCCSCCCTTSSCCCCHHHHHHHHH-HTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHH
T ss_pred             EEccCCCCcCCCCCCCCcHHHHHHHHH-HHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHH
Confidence            677766554555543  3667776543 322111111122 222344555555443    2  12456777777666555


Q ss_pred             HHHHHHH--hccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc
Q 011777          170 LAMLMAR--LSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG  247 (477)
Q Consensus       170 ~Al~~ar--~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~  247 (477)
                      .++.++.  ...+++.|++.+++|.++.......+.             ..+.+|......+..+    .+++.+.+...
T Consensus       108 ~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~-------------~~~~v~~~~~~~~~~~----~~~~~~~~~~~  170 (397)
T d3tata_         108 LKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGF-------------EVSTYPWYDEATNGVR----FNDLLATLKTL  170 (397)
T ss_dssp             HHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTTC-------------CCEECCCCCTTTSSCC----HHHHHHHHTTC
T ss_pred             HHHHHHHhhhcCCCCcceecccCccccHHHHHHcCC-------------EEEEEecchhhccccc----hHHHHHHhhhc
Confidence            4444332  134678899999999988766654432             2222222111122112    24444444433


Q ss_pred             CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCc-cc-cccCC---Ccceeeeccc
Q 011777          248 TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYW-GF-ETQGV---IPDIVTMAKG  322 (477)
Q Consensus       248 ~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~-~~-~~~gv---~pDivt~sK~  322 (477)
                       ..++.++++...+|++| .+++++.+++|.++|++||+++|+||+|.+|.+.+.... .. ...+.   ...+.++||.
T Consensus       171 -~~~~~~~~~~~p~NPTG-~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~  248 (397)
T d3tata_         171 -PARSIVLLHPCCHNPTG-ADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKI  248 (397)
T ss_dssp             -CSSCCCEECSSSCSSSC-CCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHH
T ss_pred             -ccccEEEEecCCCCCCC-eeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCccc
Confidence             23455666666666777 567999999999999999999999999999866541111 11 11122   2233478999


Q ss_pred             ccC-ccceEEEEeCHHHHHhhcc-------cccccCCCCcHHHHHHHHHHHHhhc-hhhHHHHHHHHHHHHHHHHHHHHH
Q 011777          323 IGN-GLPLGAVVTTPEIANVMAQ-------KIQFNTFGGNPVCSAGGLAVLRVID-KERRQAHCADVGSHLLGRLRTLQE  393 (477)
Q Consensus       323 lg~-G~pig~v~~~~~~~~~~~~-------~~~~~t~~~~~~~~aaa~a~l~~l~-~~~~~~~~~~~~~~l~~~L~~l~~  393 (477)
                      ++. |+|+||++++....+....       .......+.+...++++...+.... ...+.++++.+.++++++.+.+.+
T Consensus       249 ~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~  328 (397)
T d3tata_         249 FSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVK  328 (397)
T ss_dssp             HTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            995 9999999987654433221       1233334455566665555554211 122333444444444443333332


Q ss_pred             hC---C----CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCCCCEEEEeCCCCCcHHHHHH
Q 011777          394 RH---D----IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLHGNVFRIKPPMCFTKDDADF  465 (477)
Q Consensus       394 ~~---~----~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~  465 (477)
                      ..   .    ........|+|.|+.+.             .+.++.|+ +.||.+.+++      ||+.+ .+++++|+.
T Consensus       329 ~L~~~~~~~~~~~~~~~~G~F~~~~ls-------------~e~~~~L~~e~~V~l~~g~------Ri~~a-~~~~~~i~~  388 (397)
T d3tata_         329 VLSTEMPERNFDYLLNQRGMFSYTGLS-------------AAQVDRLREEFGVYLIASG------RMCVA-GLNTANVQR  388 (397)
T ss_dssp             TTTTTCTTSCTTHHHHCCSSBCCCCCC-------------HHHHHHHTTTTCEECCSSS------CCBTT-SCCTTTHHH
T ss_pred             HHHHhCCCCceEEEcCCCceEEecCcC-------------HHHHHHHHHhCCEEeCCCC------EEEec-cCCHHHHHH
Confidence            22   1    11124456777776541             12345554 5699998864      78654 467899999


Q ss_pred             HHHHHHHHH
Q 011777          466 LVDALDYSM  474 (477)
Q Consensus       466 ~l~~l~~~l  474 (477)
                      +.++|++++
T Consensus       389 ~~~ai~~v~  397 (397)
T d3tata_         389 VAKAFAAVM  397 (397)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999998764

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.79  E-value=5.5e-18  Score=168.69  Aligned_cols=331  Identities=13%  Similarity=0.078  Sum_probs=206.2

Q ss_pred             CCCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc-cc-----cccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHH
Q 011777           94 NGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH-AT-----TIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEA  167 (477)
Q Consensus        94 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~-~~-----~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA  167 (477)
                      ++..|||..+      .|..+..|.+++.+.+..... ..     .....+..++.+++++++++.+.+++.|++++|++
T Consensus        26 ~~~iYLd~as------~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~   99 (404)
T d1qz9a_          26 EGVIYLDGNS------LGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN   99 (404)
T ss_dssp             TTCEECCTTT------SCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred             CCCEEcCCcc------cccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCCcEEEecCchHH
Confidence            4678999653      345678899999998765211 00     01123556789999999999988999999999999


Q ss_pred             HHHHHHHHHh----ccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHH
Q 011777          168 NELAMLMARL----STGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDH  243 (477)
Q Consensus       168 ~~~Al~~ar~----~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~  243 (477)
                      +..++..+..    ....+.+|+.+..++........... .....     .+...       ...+      .++++++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~-------~~~~------~~~~~~~  160 (404)
T d1qz9a_         100 LFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLA-DMLQQ-----GYTLR-------LVDS------PEELPQA  160 (404)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHH-HHHCS-----SCEEE-------EESS------GGGHHHH
T ss_pred             HHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhh-eeeee-----ceecc-------cccc------chhHHHh
Confidence            9887653321    23445666666665543222211111 00000     00000       0011      2566676


Q ss_pred             HhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--c
Q 011777          244 IDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--K  321 (477)
Q Consensus       244 i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K  321 (477)
                      ++    +++++|.+..+++.+|.+.|    +++|.++|+++|+++++|-+|+ +|..     .++.....+|.++++  |
T Consensus       161 i~----~~T~lV~i~~v~~~tG~~~p----v~~i~~~~~~~~~~~~vD~~q~-~g~~-----~~~~~~~~~d~~~~s~~K  226 (404)
T d1qz9a_         161 ID----QDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAV-----PVDLHQAGADYAIGCTYK  226 (404)
T ss_dssp             CS----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTS-----CCCHHHHTCSEEEECSSS
T ss_pred             cC----CCceEEEEecccccccceec----HHHHhccccccccceeEEeecc-cccc-----ccccccccceEEEEechh
Confidence            65    68899999999999999998    9999999999999999999997 4322     223333445666554  8


Q ss_pred             cccCcc-ceEEEEeCHHHHHhhccccc-----------------------ccCCCCcHHHHHHHHHHHHhhch---hhHH
Q 011777          322 GIGNGL-PLGAVVTTPEIANVMAQKIQ-----------------------FNTFGGNPVCSAGGLAVLRVIDK---ERRQ  374 (477)
Q Consensus       322 ~lg~G~-pig~v~~~~~~~~~~~~~~~-----------------------~~t~~~~~~~~aaa~a~l~~l~~---~~~~  374 (477)
                      .+.+|. ..|+++.+++..+.+.....                       ......+..+.....+.++.+.+   +...
T Consensus       227 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  306 (404)
T d1qz9a_         227 YLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLR  306 (404)
T ss_dssp             TTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             hcccCCceEEEEEechhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHH
Confidence            886653 35788888777655432100                       00112345555555555554433   4445


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCC--ce--eeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEE
Q 011777          375 AHCADVGSHLLGRLRTLQERHDI--IG--DVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVF  450 (477)
Q Consensus       375 ~~~~~~~~~l~~~L~~l~~~~~~--~~--~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~i  450 (477)
                      ++...+...+.+.+..+....++  ++  +...++.++.+.+        +.   ...+.+.|.++||++...  .+++|
T Consensus       307 ~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~--------~~---~~~v~~~L~~~gi~~~~r--~~~~l  373 (404)
T d1qz9a_         307 RKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEH--------PE---GYAVIQALIDRGVIGDYR--EPRIM  373 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEEC--------TT---HHHHHHHHHTTTEECEEE--TTTEE
T ss_pred             HHHHHhHHHHHHHHHhhccCCCEEEECCCCccceeeEEEEec--------CC---HHHHHHHHHHCCCEEeec--CCCeE
Confidence            55555566555555554432221  11  1222344554443        11   456888999999976432  25789


Q ss_pred             EEeC-CCCCcHHHHHHHHHHHHHHHhh
Q 011777          451 RIKP-PMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       451 Ri~p-~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      ||+| ++.+|++|||++++.|++++++
T Consensus       374 RiS~~h~ynt~~did~~~~~L~~vl~~  400 (404)
T d1qz9a_         374 RFGFTPLYTTFTEVWDAVQILGEILDR  400 (404)
T ss_dssp             EEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHHh
Confidence            9999 5789999999999999999874

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.79  E-value=1.1e-17  Score=163.87  Aligned_cols=321  Identities=14%  Similarity=0.073  Sum_probs=193.3

Q ss_pred             CHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCC--EEEEeCChHHHHHHHHHHHHhccCCceEEEEccCc
Q 011777          114 HPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLK--VVYFVNSGTEANELAMLMARLSTGNLGMIALRNAY  191 (477)
Q Consensus       114 ~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~--~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~y  191 (477)
                      +++|.+|+.+..  ..|.. .+.....++..++|+++++.+.+  .++|++|||++++.++....  .+++++++....+
T Consensus        12 ~~~V~~A~~~~~--~~~~~-~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~--~~~~~~~~~~~~~   86 (361)
T d1m32a_          12 SRTVKEAMLFDS--CTWDD-DYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSAL--GPQDKVLIVSNGA   86 (361)
T ss_dssp             CHHHHHTTCCCC--CTTSH-HHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSC--CTTCCEEEEESSH
T ss_pred             CHHHHHHhhhhc--cCCCc-HHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhh--hhccccceeeehh
Confidence            566766653211  11211 22345678899999999876544  38899999999999887443  2445566655555


Q ss_pred             cCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCc
Q 011777          192 HGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAP  271 (477)
Q Consensus       192 hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~  271 (477)
                      ++...........         .....+..+.  .....       .+.+...... ..++..+.+..+++.+|.+.|  
T Consensus        87 ~~~~~~~~~~~~~---------~~~~~~~~~~--~~~~~-------~~~~~~~~~~-~~~~~~v~~~~~~~~tG~~~~--  145 (361)
T d1m32a_          87 YGARMVEMAGLMG---------IAHHAYDCGE--VARPD-------VQAIDAILNA-DPTISHIAMVHSETTTGMLNP--  145 (361)
T ss_dssp             HHHHHHHHHHHHT---------CCEEEEECCT--TSCCC-------HHHHHHHHHH-CTTCCEEEEESEETTTTEECC--
T ss_pred             hhhhHHHHhhhhh---------cccccccccc--cCCcc-------chhhHHHHHh-ccCccceEEEeeecccccchh--
Confidence            5432222111110         0111111111  00111       1112111111 256788888888888998888  


Q ss_pred             hhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCHHHHHhhccccc--
Q 011777          272 GYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPEIANVMAQKIQ--  347 (477)
Q Consensus       272 ~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~~~~~~~~~~~--  347 (477)
                        +++|.++|++||+++++|.+|+ +|.   .  .++......|++++|  |.+++...+|+++.+++..+.......  
T Consensus       146 --i~~i~~~~~~~g~~~~vDa~qs-~G~---~--~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~  217 (361)
T d1m32a_         146 --IDEVGALAHRYGKTYIVDAMSS-FGG---I--PMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSL  217 (361)
T ss_dssp             --HHHHHHHHHHHTCEEEEECTTT-TTT---S--CCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCS
T ss_pred             --hhhhhhhhcccceeeEeecccc-cCc---c--cccccccccceEEeeecccccCCCCceEEEechhhhhhhccccccc
Confidence              9999999999999999999998 432   2  234445567888876  988876678999999988876653211  


Q ss_pred             ----------------ccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCc--eeeeccc-eeE
Q 011777          348 ----------------FNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDII--GDVRGRG-LMV  408 (477)
Q Consensus       348 ----------------~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~--~~v~g~g-~~~  408 (477)
                                      ...++.+...+.+...+++.+..+...+...+..+...+.+.+.....+..  .+...++ .++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs~~v~  297 (361)
T d1m32a_         218 SLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIIT  297 (361)
T ss_dssp             TTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEE
T ss_pred             cccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcCCcccCChhhcCCcEE
Confidence                            123345566777777777766555444444444444444444444444322  1111122 233


Q ss_pred             EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-CCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          409 GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-HGNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       409 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                      .+.+..+.      ......+.+.|.++|+.+.+|.. .++.+||+....++++||++++++|+++|
T Consensus       298 ~~~~p~~~------~~~~~~~~~~l~~~gi~i~~G~~~~~~~~Ris~~g~~~~~di~~lv~al~~~L  358 (361)
T d1m32a_         298 AFYSPEDP------QYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAM  358 (361)
T ss_dssp             EEECCCCT------TCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred             EEECCCCC------CCCHHHHHHHHHHCCcEEECCCcCCCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence            44332111      11245788999999999987643 35789998544679999999999999986

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.78  E-value=1.3e-18  Score=173.54  Aligned_cols=314  Identities=12%  Similarity=0.004  Sum_probs=182.3

Q ss_pred             cccCCCCCHHHHHHH-HHHHhh------ccccccccCC----hHHHHHHHHHHhhC---C---CCCCEEEEeCChHHHHH
Q 011777          107 TVSCGHCHPDVLNAI-FEQSKL------LQHATTIYLH----HAIADFAEALASKM---P---GNLKVVYFVNSGTEANE  169 (477)
Q Consensus       107 ~~~lGh~~p~v~~Av-~~~l~~------~~~~~~~~~~----~~~~~l~~~La~~~---~---~~~~~v~~~~sGseA~~  169 (477)
                      +..++|++|-+.+.. +++.+.      +.|..+.+.+    ....+|.+.+++++   +   .+...|+++||++|++.
T Consensus        58 ~~~~~~gdp~~~~~~w~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~  137 (425)
T d2hoxa1          58 SADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIH  137 (425)
T ss_dssp             CEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHH
T ss_pred             eeeCCCCCCCCCCHHHHhCcccceEEeecccccceecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHH
Confidence            345778888777763 222221      1122211111    12346666666553   2   12347999999999999


Q ss_pred             HHHHHHHh------ccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHH
Q 011777          170 LAMLMARL------STGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDH  243 (477)
Q Consensus       170 ~Al~~ar~------~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~  243 (477)
                      +++.....      ..+.++||+..|.|..+...+.-..+. .       ..+...                 .+.+++.
T Consensus       138 ~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~-~-------~~~~~D-----------------~~~~~~~  192 (425)
T d2hoxa1         138 GLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKK-G-------YVWAGN-----------------AANYVNV  192 (425)
T ss_dssp             HHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBT-T-------EEEEEE-----------------GGGGTTC
T ss_pred             HHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCC-C-------CccCCC-----------------HHHHHhh
Confidence            99986532      235678999999997764433222211 0       011111                 1333333


Q ss_pred             HhccCCCCee-EEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeeccc
Q 011777          244 IDFGTSGKVA-GFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKG  322 (477)
Q Consensus       244 i~~~~~~~~a-~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~  322 (477)
                      ++    .+++ .+++.|+ |++|.+..           +..+++.+|.||+|.+..++.  . . .......-+-+|||.
T Consensus       193 ~~----~~~~ii~l~sPn-NPtG~l~~-----------~v~~~~~~I~DEaY~~~~f~~--~-~-~~~~~~Ivl~S~SK~  252 (425)
T d2hoxa1         193 SN----PEQYIEMVTSPN-NPEGLLRH-----------AVIKGCKSIYDMVYYWPHYTP--I-K-YKADEDILLFTMSKF  252 (425)
T ss_dssp             SC----GGGEEEEEESSC-TTTCCCCC-----------CSSTTCEEEEECTTCSTTTSC--C-C-SCBCCSEEEEEHHHH
T ss_pred             CC----CCceEEEEECCC-CCCcchhh-----------hhhhCCEEEEeccccCccccc--h-h-hhcCCeEEEEeCHHh
Confidence            32    3444 4555665 45554321           223689999999996432222  0 0 111222223378999


Q ss_pred             cc-CccceEEEEeC-HHHHHhhcccccccCCCCcHHHHHHHHHHHHhhch---------hhHHHHHHHHHHHHHHHHHHH
Q 011777          323 IG-NGLPLGAVVTT-PEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDK---------ERRQAHCADVGSHLLGRLRTL  391 (477)
Q Consensus       323 lg-~G~pig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~---------~~~~~~~~~~~~~l~~~L~~l  391 (477)
                      +| .|+|+||++++ +.+++.+......++++.+.++|.+++++|+....         .++.+..++..+..+++|.+.
T Consensus       253 fglaGlRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~  332 (425)
T d2hoxa1         253 TGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITAL  332 (425)
T ss_dssp             TSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcchheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99 69999997665 66777777666667888899999999988875321         123333333222223333333


Q ss_pred             HHhCCCc---------------eeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCC---CCEEEEe
Q 011777          392 QERHDII---------------GDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLH---GNVFRIK  453 (477)
Q Consensus       392 ~~~~~~~---------------~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---~~~iRi~  453 (477)
                      ..+.+..               ......+.+.|+.+..+.         ...+.+.|+++||++.||..+   ++++||+
T Consensus       333 L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~---------~~~~~~lL~e~gI~v~pGs~FG~~~~yvRis  403 (425)
T d2hoxa1         333 LDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEE---------DKDCYQTFQNGRINTQNGVGFEASSRYVRLS  403 (425)
T ss_dssp             HTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGG---------GCSHHHHHHHTTEECEEGGGGTSCTTEEEEE
T ss_pred             HHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCCh---------HHHHHHHHHhCCEEEEechhcCCCCCEEEEE
Confidence            3322211               123444566677663221         123556788999999998544   4799995


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHhh
Q 011777          454 PPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       454 p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                        +..++|++++++++|++++++
T Consensus       404 --l~~~~e~ld~~l~rL~~~v~a  424 (425)
T d2hoxa1         404 --LIKTQDDFDQLMYYLKDMVKA  424 (425)
T ss_dssp             --CSSCHHHHHHHHHHHHHHHTC
T ss_pred             --ecCCHHHHHHHHHHHHHHHhc
Confidence              678899999999999999864

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.77  E-value=1.2e-18  Score=171.49  Aligned_cols=292  Identities=13%  Similarity=0.045  Sum_probs=160.4

Q ss_pred             HHHHHHHHHhhCCC-CCCEEEEeCChHHHHHHHHHHHHhccCCceEEEE-ccCccCCcccccccccCCCCCCCCCCCCee
Q 011777          140 IADFAEALASKMPG-NLKVVYFVNSGTEANELAMLMARLSTGNLGMIAL-RNAYHGGSSGTIGLTALNTWKYPIPQGEIH  217 (477)
Q Consensus       140 ~~~l~~~La~~~~~-~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~-~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~  217 (477)
                      ..++.+...+.+.. +.+.+++++||++|+..++.. .  .+++.+++. +...|........+.            +..
T Consensus        52 ~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~a-l--~~~~~vi~~~~~~~~~~~~~~~~l~------------g~~  116 (366)
T d2aeua1          52 AEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILA-L--KPKKVIHYLPELPGHPSIERSCKIV------------NAK  116 (366)
T ss_dssp             HHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHH-H--CCSEEEEECSSSSCCTHHHHHHHHT------------TCE
T ss_pred             HHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHH-h--CCCCEEEEecCCCcchhHHHHHHhc------------CCe
Confidence            34555555555543 346899999999999998864 3  256666654 323444333222222            222


Q ss_pred             eecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEeccc-CCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccC
Q 011777          218 HVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETI-QGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG  296 (477)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi-~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g  296 (477)
                      .+...         |    ++++++.|+    +++++|+++.. +++++    +...|++|.++|++||+++|+||+|..
T Consensus       117 ~v~~~---------d----~e~l~~~i~----~~tk~i~~~~p~n~~~~----~~~~l~~i~~ia~~~~~~~i~De~y~~  175 (366)
T d2aeua1         117 YFESD---------K----VGEILNKID----KDTLVIITGSTMDLKVI----ELENFKKVINTAKNKEAIVFVDDASGA  175 (366)
T ss_dssp             EEEES---------C----HHHHHTTCC----TTEEEEEECBCTTSCBC----CHHHHHHHHHHHHHHTCCEEEECTTHH
T ss_pred             EECCC---------C----HHHHHHhcC----CCceEEEEEecCCCCcC----CHHHHHHHHHHhccCcEEEEEecCccc
Confidence            22111         1    467776665    56778877754 44333    445599999999999999999999863


Q ss_pred             ccCCCC-CCccccccCCCcceee--ecccccCccceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhH
Q 011777          297 FGRTGS-HYWGFETQGVIPDIVT--MAKGIGNGLPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERR  373 (477)
Q Consensus       297 fgr~G~-~~~~~~~~gv~pDivt--~sK~lg~G~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~  373 (477)
                      ..+.+. ... ...++  .|+++  ++|++ +|+++||+++++++++.+.......+++.+|+.+.++.++|+.+.-+++
T Consensus       176 ~~~~~~~~~~-~~~~~--~di~~~S~sK~~-~g~~~G~i~~~~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~  251 (366)
T d2aeua1         176 RVRLLFNQPP-ALKLG--ADLVVTSTDKLM-EGPRGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERI  251 (366)
T ss_dssp             HHHHHTTCCC-HHHHT--CSEEEEETTSSS-SSCSCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHH
T ss_pred             cccccccCCC-HhhcC--ceEEEecccccc-cccceeEEEecHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhccHHHH
Confidence            311110 111 11233  45665  45655 3789999999999999887655445566778888888888876543322


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHhCCCceee--eccce-eEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccCCC
Q 011777          374 ---QAHCADVGSHLLGRLRTLQERHDIIGDV--RGRGL-MVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGGLH  446 (477)
Q Consensus       374 ---~~~~~~~~~~l~~~L~~l~~~~~~~~~v--~g~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~  446 (477)
                         .++.++....+.+.+.......+.....  ...+. +++...... ..  .......+++..|+ +.||++.|+..+
T Consensus       252 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~a~~Ll~~~gV~~ip~~~~  328 (366)
T d2aeua1         252 RKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKD-DT--INIKKLIEIGFNLLKNYGIITITVAGM  328 (366)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESS-HH--HHHHHHHHHHHHHHHHHCEECSTTSSS
T ss_pred             HHHHHHHHHHHHHHHhhhhccccccccccCcccccCccchhccCCCcc-ee--ecccCHHHHHHHHHHhCCEEEEECCCC
Confidence               2333333333444444433222222111  11122 222222110 00  00112234555554 569998776332


Q ss_pred             ---CCEEEEeCCCCCcHH-HHHHHHHHHHHHH
Q 011777          447 ---GNVFRIKPPMCFTKD-DADFLVDALDYSM  474 (477)
Q Consensus       447 ---~~~iRi~p~~~~t~e-~i~~~l~~l~~~l  474 (477)
                         .+++||++....+++ +.+++++.+.+.+
T Consensus       329 p~~~~~lRis~~~~~~~~i~~d~l~~ai~~~l  360 (366)
T d2aeua1         329 PGASKSLRIDLTSRDAERIDDNYIIKAIVESI  360 (366)
T ss_dssp             CSSCCSEEEETTSGGGGGSCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeccccchhhCCHHHHHHHHHHHH
Confidence               358999876543222 2344444444443

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=1.8e-17  Score=163.40  Aligned_cols=333  Identities=15%  Similarity=0.133  Sum_probs=195.0

Q ss_pred             CEEEeecCCcccccCCCCCHHHHHHHHHHHhhccc-ccccc-----CChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHH
Q 011777           96 RRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQH-ATTIY-----LHHAIADFAEALASKMPGNLKVVYFVNSGTEANE  169 (477)
Q Consensus        96 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~-~~~~~-----~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~  169 (477)
                      |-|||..++.      ..++.|+|++.+.++.... ....+     ......+.+++++++++.+.++|+|++|+||++.
T Consensus         2 ~iyld~a~~~------~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~   75 (376)
T d1eg5a_           2 RVYFDNNATT------RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESIN   75 (376)
T ss_dssp             CEECBTTTCC------CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHH
T ss_pred             EEEEECcccc------cCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHH
Confidence            5689975533      4689999999998875321 11111     1233456678999999988889999999999999


Q ss_pred             HHHHHH-HhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccC
Q 011777          170 LAMLMA-RLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGT  248 (477)
Q Consensus       170 ~Al~~a-r~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~  248 (477)
                      .++... .....++.+++....+|+...........         .|+....+|....+..+      +++++++++   
T Consensus        76 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~---------~g~~v~~vp~~~~~~id------~~~l~~~i~---  137 (376)
T d1eg5a_          76 WILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSM---------KGFKVKYVPVDSRGVVK------LEELEKLVD---  137 (376)
T ss_dssp             HHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHH---------TTCEEEECCBCTTSCBC------HHHHHHHCC---
T ss_pred             hhhhcccccccccCcccccccccchhhHHHHHHHHh---------cCCEEEEEcCCCCCeEC------HHHHHHhcC---
Confidence            988753 33344555555555555543333221110         12233222221111122      577888776   


Q ss_pred             CCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHh--CcEEEEcCcccCccCCCCCCccccccCCCcceee--eccccc
Q 011777          249 SGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKA--GGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVT--MAKGIG  324 (477)
Q Consensus       249 ~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~--gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt--~sK~lg  324 (477)
                       +++++|++..+++.+|.+.+    ++++.++|+++  |+++++|.+|. +|..     .++.....+|+++  ..|.+|
T Consensus       138 -~~t~lv~is~v~~~tG~~~~----~~~i~~~~~~~~~~~~~~vD~~q~-~g~~-----~~d~~~~~~D~~~~s~~K~~g  206 (376)
T d1eg5a_         138 -EDTFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKI-----PFSLEKLEVDYASFSAHKFHG  206 (376)
T ss_dssp             -TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTS-----CCCCTTTCCSEEEEEGGGGTS
T ss_pred             -CCceEEEEECCccccceeee----ehhhhhhhhhcccCceeEEEeeec-cccc-----cccccccCccceecccceeec
Confidence             68899999999999998888    89999988666  99999999996 4322     2233344567665  559865


Q ss_pred             CccceEEEEeCHHHHHhhccccccc-------CCCCcHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHHHHhC
Q 011777          325 NGLPLGAVVTTPEIANVMAQKIQFN-------TFGGNPVCSAGGLAVLRVIDK--ERRQAHCADVGSHLLGRLRTLQERH  395 (477)
Q Consensus       325 ~G~pig~v~~~~~~~~~~~~~~~~~-------t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~l~~~~  395 (477)
                       +...|++..+++.  .+.+...++       ....+......+.+.......  ............++.++|.......
T Consensus       207 -p~G~~~l~~~~~~--~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  283 (376)
T d1eg5a_         207 -PKGVGITYIRKGV--PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHI  283 (376)
T ss_dssp             -CTTCEEEEECTTS--CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred             -CCCceeEEeccCc--ccCCcccCCCCcccccCCcccchhhhhHHHHhhccccchhhhhhhhhhhhhhhccccccccccc
Confidence             3445666666553  122221111       112234444444444433221  2334444445555555554432111


Q ss_pred             CCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC---------------------CCCEEEEeC
Q 011777          396 DIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL---------------------HGNVFRIKP  454 (477)
Q Consensus       396 ~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------~~~~iRi~p  454 (477)
                      -.....+ ......+.+..         .....+...|.++||.++.|..                     .++++||+|
T Consensus       284 ~~~~~~~-~~~~~~~~~~~---------~~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~  353 (376)
T d1eg5a_         284 ITPLEIS-LPNTLSVSFPN---------IRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISL  353 (376)
T ss_dssp             CSCTTSB-CTTEEEEECTT---------CCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEEC
T ss_pred             ccccccc-ccceeeeccCC---------CCHHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEec
Confidence            0000011 11111222211         1245677778889998865410                     024699999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhh
Q 011777          455 PMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       455 ~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      +..+|++|||.+++.|+++++-
T Consensus       354 ~~ynt~edid~l~~~L~~iv~~  375 (376)
T d1eg5a_         354 CKYNTEEEVDYFLKKIEEILSF  375 (376)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999864

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.74  E-value=6.4e-17  Score=163.04  Aligned_cols=352  Identities=14%  Similarity=0.053  Sum_probs=193.0

Q ss_pred             CCEEEeecCCcccccCCCCCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHH
Q 011777           95 GRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLM  174 (477)
Q Consensus        95 G~~ylD~~~g~~~~~lGh~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~  174 (477)
                      ...+||+.+-.++..       ..+++..++..+.-  ...-++...+|.++++++++  .+.++|++||+.||.++++.
T Consensus        41 ~~v~iDl~sDs~t~a-------m~~~~~aa~~~GDd--~Y~~dpt~~~lE~~~a~l~G--~e~al~~~SGt~An~~a~~~  109 (456)
T d1c7ga_          41 KDIYIDLLTDSGTNA-------MSDKQWAGMMIGDE--AYAGSENFYHLEKTVKELFG--FKHIVPTHQGRGAENLLSQL  109 (456)
T ss_dssp             GGCSEECSCSSSCCC-------EEHHHHHHTTSCCC--CSSSCHHHHHHHHHHHHHHC--CSEEEEESSHHHHHHHHHHH
T ss_pred             cceeeEcccCCCccc-------chHHHHHHHhccch--hccCCchHHHHHHHHHHHhC--CCeEEECCCHHHHHHHHHHH
Confidence            345889987766421       22333333322221  12236788999999999995  47899999999999999985


Q ss_pred             HHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeE
Q 011777          175 ARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAG  254 (477)
Q Consensus       175 ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~  254 (477)
                      .   .++.+.|+....|+.........++.+...   ..........+++++...+      .++|++.|+..++..++.
T Consensus       110 l---~~~Gd~Vi~~~~f~~~~~~i~~~g~~~~~~---~~~~~~~~~~~~~~~~~~d------~~~le~~I~~~~~~~~~~  177 (456)
T d1c7ga_         110 A---IKPGQYVAGNMYFTTTRFHQEKNGATFVDI---VRDEAHDASLNLPFKGDID------LNKLATLIKEKGAENIAY  177 (456)
T ss_dssp             H---CCTTEEEEESSCCHHHHHHHHHTTEEEEEC---BCGGGGCTTCCCSCTTCBC------HHHHHHHHHHHCGGGEEE
T ss_pred             h---cCCCCeEecCcchHHHHHHHHHcCceeeec---cccccccccccCCccccCC------HHHHHHHhhhcCCcccee
Confidence            4   234444444333333211111111100000   0000000011112222222      588999998655667889


Q ss_pred             EEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCcc-----CCCCCCccccc------cCCCcceeeec--c
Q 011777          255 FIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG-----RTGSHYWGFET------QGVIPDIVTMA--K  321 (477)
Q Consensus       255 vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfg-----r~G~~~~~~~~------~gv~pDivt~s--K  321 (477)
                      +++|..++.+|..+.+.+++++|+++|++||+.+|.|+++..-.     .....+.....      ..-..|++++|  |
T Consensus       178 i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K  257 (456)
T d1c7ga_         178 ICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKK  257 (456)
T ss_dssp             EEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTT
T ss_pred             EEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccc
Confidence            99998888877788899999999999999999999999975110     00000000000      01124777654  7


Q ss_pred             cccCccceEEEEeC-HHHHHhhccc----ccccCCCCc-HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhC
Q 011777          322 GIGNGLPLGAVVTT-PEIANVMAQK----IQFNTFGGN-PVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERH  395 (477)
Q Consensus       322 ~lg~G~pig~v~~~-~~~~~~~~~~----~~~~t~~~~-~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~  395 (477)
                      .++++ .-|+++++ +++.+.++..    ....++++. ...+.+....+.....++..++..++.++|.++|.++  ..
T Consensus       258 ~~~~~-~GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~l~~r~~~~~~L~e~L~~~--g~  334 (456)
T d1c7ga_         258 DCLVN-IGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLREA--GV  334 (456)
T ss_dssp             TTCCS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred             ccccc-ceeEEEcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc--cC
Confidence            66631 11666665 4565555432    122233332 3333333344444444556666667778888888775  22


Q ss_pred             CCceeeeccceeEEEEEeeCC--CCCCccHHHHHHHHHHHHHcCceeeccCC---------------CCCEEEEeCC-CC
Q 011777          396 DIIGDVRGRGLMVGMELVTDR--KEKTPAKAETAVLFEKLRELGVLVGKGGL---------------HGNVFRIKPP-MC  457 (477)
Q Consensus       396 ~~~~~v~g~g~~~~i~~~~~~--~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------~~~~iRi~p~-~~  457 (477)
                      +.+.  +..+..+.++.....  ....... ....+.+.+.+.||...+.+.               ..+.+||+.| ..
T Consensus       335 ~vv~--p~g~~~v~vda~~~~~~i~~~~~~-~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~  411 (456)
T d1c7ga_         335 PIVE--PTGGHAVFLDARRFCPHLTQDQFP-AQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRV  411 (456)
T ss_dssp             CBCS--SCCSSEEEEEHHHHCTTSCGGGCH-HHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTS
T ss_pred             Cccc--CCCCcceeEechhhccCCCccccc-HHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCccc
Confidence            3222  223333344322110  0111111 112334445677886533210               1246899877 56


Q ss_pred             CcHHHHHHHHHHHHHHHh
Q 011777          458 FTKDDADFLVDALDYSMS  475 (477)
Q Consensus       458 ~t~e~i~~~l~~l~~~l~  475 (477)
                      .|+++||.+++.|+++++
T Consensus       412 ~T~e~iD~Vae~i~~v~~  429 (456)
T d1c7ga_         412 YTYAHMDVVADGIIKLYQ  429 (456)
T ss_dssp             CCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            699999999999999875

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=2.8e-16  Score=155.04  Aligned_cols=293  Identities=11%  Similarity=0.068  Sum_probs=176.3

Q ss_pred             HHHHHHHHhhC----CCCCCEEEEeCChHHHHHHHHHHHH-hccCCceEEEEccCccCCcccccccccCCCCCCCCCCCC
Q 011777          141 ADFAEALASKM----PGNLKVVYFVNSGTEANELAMLMAR-LSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGE  215 (477)
Q Consensus       141 ~~l~~~La~~~----~~~~~~v~~~~sGseA~~~Al~~ar-~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~  215 (477)
                      .++.+.+.+.+    +.+.+.++|++|||+|++++++... ...+++++++...++++...........         ..
T Consensus        39 ~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~~~~---------~~  109 (382)
T d2bkwa1          39 QRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYG---------AQ  109 (382)
T ss_dssp             HHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTT---------CE
T ss_pred             HHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhhccccc---------cc
Confidence            44445555554    3456789999999999999998653 3345678888888887754332221110         01


Q ss_pred             eeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhC--cEEEEcCc
Q 011777          216 IHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAG--GVCIADEV  293 (477)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~g--illI~DEv  293 (477)
                      ...+ .+.+......      .+++++.+..   .++..+++..+.+++|...+    ++.+.++|++|+  +++++|.+
T Consensus       110 ~~~~-~~~~~~~~~~------~~~~~~~~~~---~~~~~v~~~~~~~~tg~~~~----~~~~~~~~~~~~~~~~~~vDa~  175 (382)
T d2bkwa1         110 VDVV-RPLKIGESVP------LELITEKLSQ---NSYGAVTVTHVDTSTAVLSD----LKAISQAIKQTSPETFFVVDAV  175 (382)
T ss_dssp             EEEE-CCSSTTSCCC------HHHHHHHHHH---SCCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTSEEEEECT
T ss_pred             cccc-cccCCCCccc------hhHHHHHhhh---ccchheeeeecccccccccc----chhhhhhccccccceeeeeecc
Confidence            1111 1111111111      3556666552   45677788888888888888    899999888775  99999999


Q ss_pred             ccCccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCHHHHHhhcccc-------------------------
Q 011777          294 QTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPEIANVMAQKI-------------------------  346 (477)
Q Consensus       294 ~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~~~~~~~~~~-------------------------  346 (477)
                      |+ +|.   ..  ++......|++++|  |+++|...+|+++.+++..+.+....                         
T Consensus       176 qs-~g~---~p--id~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (382)
T d2bkwa1         176 CS-IGC---EE--FEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAG  249 (382)
T ss_dssp             TT-TTT---SC--CCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTT
T ss_pred             cc-ccc---cc--ccccccCeeEEeecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhccccc
Confidence            98 432   22  33334446877766  99987677999999999876654210                         


Q ss_pred             cccC-CCCcHHHHHHHHHHHHhhchhhH---HHHHHHHHHHHHHHHHHHHHhCCCc---eeeeccceeEEEEEeeCCCCC
Q 011777          347 QFNT-FGGNPVCSAGGLAVLRVIDKERR---QAHCADVGSHLLGRLRTLQERHDII---GDVRGRGLMVGMELVTDRKEK  419 (477)
Q Consensus       347 ~~~t-~~~~~~~~aaa~a~l~~l~~~~~---~~~~~~~~~~l~~~L~~l~~~~~~~---~~v~g~g~~~~i~~~~~~~~~  419 (477)
                      ...+ +..|.....+..++|+.+.++..   .++.+++.+++++++.+........   ...+. ..+..+.+       
T Consensus       250 ~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s-~~v~~~~~-------  321 (382)
T d2bkwa1         250 KGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSA-HGLTAVYV-------  321 (382)
T ss_dssp             CCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBC-SSCEEEEC-------
T ss_pred             ccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccC-CcEEEEcC-------
Confidence            0112 23455566777788988766543   3444455555655554321101110   01111 12233333       


Q ss_pred             CccHHHHHHHHHHHHHcCceeeccC---CCCCEEEEe-CCCCCcHHHHHHHHHHHHHHH
Q 011777          420 TPAKAETAVLFEKLRELGVLVGKGG---LHGNVFRIK-PPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       420 ~~~~~~~~~~~~~l~~~Gv~v~~~~---~~~~~iRi~-p~~~~t~e~i~~~l~~l~~~l  474 (477)
                       ++   ..++.+.|.++||.+..|.   ..+++|||+ .....++++++.+++.|+.+.
T Consensus       322 -~~---~~~~~~~L~~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~  376 (382)
T d2bkwa1         322 -AD---PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIK  376 (382)
T ss_dssp             -SC---HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHH
T ss_pred             -CC---HHHHHHHHHHCCeEEECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHH
Confidence             22   2457788899999998762   234789997 345556777777776666543

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.72  E-value=1.9e-16  Score=159.20  Aligned_cols=297  Identities=13%  Similarity=0.026  Sum_probs=176.2

Q ss_pred             HHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeec-
Q 011777          142 DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVV-  220 (477)
Q Consensus       142 ~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~-  220 (477)
                      ++..++++.++.+........++++++++++...|...+++.||+. ..-|.....++...+..          ...++ 
T Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s-~~~H~s~~k~~~~~g~~----------~~~v~~  185 (434)
T d2z67a1         117 KILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYP-YASHKSPIKAVSFVGMN----------MRLVET  185 (434)
T ss_dssp             HHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEE-CCCCHHHHHHHHHTTCE----------EEEECC
T ss_pred             HHHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEEEe-ccCCHHHHHHHHHhCCc----------ceEEEe
Confidence            3445566777654444444455556666666665555566666654 45565444433332211          01110 


Q ss_pred             CCCCcCCCCCCCHHHHHHHHHHHHhcc-CCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCcc-
Q 011777          221 NPDPYHGSFGSDAARYAQDLQDHIDFG-TSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFG-  298 (477)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~le~~i~~~-~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfg-  298 (477)
                      .++......  |    +++|++.|+.. ..+.+++|+++..+..+|.+.+    +++|.++|++||+++|+|+++.++. 
T Consensus       186 ~~~~~~~~~--d----~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~----l~~i~~~~~~~~~~l~vD~a~g~~~~  255 (434)
T d2z67a1         186 VLDGDRVYV--P----VEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNN  255 (434)
T ss_dssp             EEETTEEEC--C----HHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCH
T ss_pred             ecCCCccCC--C----HHHHHHHHHhhhhcCCceEEEeccCcCCCccccC----HHHHHHHHHHhCCeEEEeccchhhhh
Confidence            011111111  2    58888888632 2346778888887777887666    9999999999999999999986431 


Q ss_pred             CCCCCCccccccCCCcceeeec--ccccCccceEEEEeC-HHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhhHHH
Q 011777          299 RTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTT-PEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKERRQA  375 (477)
Q Consensus       299 r~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~  375 (477)
                      ..+ .. .........|+++++  |.++++...|++..+ +++.+.+.....+.+.+.+...+.+++..+.....++..+
T Consensus       256 ~~~-~~-~~~~~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~  333 (434)
T d2z67a1         256 YYL-EK-LKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVK  333 (434)
T ss_dssp             HHH-HH-HHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcc-cc-ccccccCCcceEEEcCccccccCCCccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHHHhcchhHHH
Confidence            111 00 001123356777765  999876667777665 5566666654444444444444444444443333355777


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCc-eeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeecc-----------
Q 011777          376 HCADVGSHLLGRLRTLQERHDII-GDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG-----------  443 (477)
Q Consensus       376 ~~~~~~~~l~~~L~~l~~~~~~~-~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-----------  443 (477)
                      +..++.++++++|+++...++.. ...+ ....+.+.+..          ...++...|.++||.....           
T Consensus       334 ~~~~~a~~l~~~L~~l~~~~g~~ll~~~-~~~~~~~~~~~----------~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~  402 (434)
T d2z67a1         334 NQKNSKKLLDELLNDLSKKTGGKFLDVE-SPIASCISVNS----------DPVEIAAKLYNLRVTGPRGIKKTDHFGNCY  402 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCBCCCC-CSSEEEEECSS----------CHHHHHHHHHHTTEESCEEECTTCHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhhhhcCceecCCC-CCceeeeecCC----------CHHHHHHHHHHcCCeeeehhhhccccCeee
Confidence            88888899999999887655422 1211 11122222211          1346778889999854211           


Q ss_pred             --CCCCCEEEEeCCCCCcHHHHHHHHHHHHH
Q 011777          444 --GLHGNVFRIKPPMCFTKDDADFLVDALDY  472 (477)
Q Consensus       444 --~~~~~~iRi~p~~~~t~e~i~~~l~~l~~  472 (477)
                        ....+++|+..+...|+||||+++++|++
T Consensus       403 ~~~~~~~~l~~~~s~~~T~edID~~i~~L~k  433 (434)
T d2z67a1         403 LGTYTHDYIVMNAAIGVRTEDIVNSVSKLEK  433 (434)
T ss_dssp             SSCCSCCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred             ecccCCCeEEEecCCCCCHHHHHHHHHHHhc
Confidence              11247899999999999999999999986

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.72  E-value=2.5e-16  Score=155.62  Aligned_cols=319  Identities=14%  Similarity=0.104  Sum_probs=185.8

Q ss_pred             CHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCC-CCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCcc
Q 011777          114 HPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGN-LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYH  192 (477)
Q Consensus       114 ~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~-~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yh  192 (477)
                      +|+|++|+.+..  ..|.. .-..+...+..+.|+++++.+ .+.++|+.|||+|+++++.....  +++++++...+.+
T Consensus        29 ~~~V~~Am~~~~--~~hr~-~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~~--~~~~vl~~~~g~~  103 (388)
T d2ch1a1          29 SKRVLTAMTNTV--LSNFH-AELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLE--EGDRVLIAVNGIW  103 (388)
T ss_dssp             CHHHHHHTTSCC--CCTTC-HHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCC--TTCEEEEEESSHH
T ss_pred             CHHHHHHhCcCC--CCCCC-HHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhcc--ccccccccccccc
Confidence            788888763321  12322 122456778888888887653 45677888999999999886643  5566777666665


Q ss_pred             CCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCch
Q 011777          193 GGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPG  272 (477)
Q Consensus       193 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~  272 (477)
                      +...........         .....+..+.  .....      .+++++.+..   .++..+.+..+.+++|.+.+   
T Consensus       104 ~~~~~~~~~~~~---------~~~~~~~~~~--~~~~~------~~~~~~~~~~---~~~~~v~~~~~~t~tG~~~~---  160 (388)
T d2ch1a1         104 AERAVEMSERYG---------ADVRTIEGPP--DRPFS------LETLARAIEL---HQPKCLFLTHGDSSSGLLQP---  160 (388)
T ss_dssp             HHHHHHHHHHTT---------CEEEEEECCT--TSCCC------HHHHHHHHHH---HCCSEEEEESEETTTTEECC---
T ss_pred             cccchhhhhhhc---------cccccccccc--ccccc------hhhhhhhhcc---CCcceeeeeecccccccccc---
Confidence            543222221100         0111121111  11111      2344444431   35667777777788888887   


Q ss_pred             hHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCHHHHHhhcccc----
Q 011777          273 YLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPEIANVMAQKI----  346 (477)
Q Consensus       273 ~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~~~~~~~~~~----  346 (477)
                       ++++.++|+++|+++++|.+|+ +|.   ..  ++..+...|.+++|  |++++.-.+|+++.+++..+......    
T Consensus       161 -~~~i~~~~~~~~~~~~vD~~ss-~g~---~p--id~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~  233 (388)
T d2ch1a1         161 -LEGVGQICHQHDCLLIVDAVAS-LCG---VP--FYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSK  233 (388)
T ss_dssp             -CTTHHHHHHHTTCEEEEECTTT-BTT---BC--CCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCS
T ss_pred             -hhhhcchhccccceeeeeeeec-ccc---cc--cchhccCceEEEEccccccCCCCeEEEEeccHHHHHhhhcccCccc
Confidence             7888999999999999999998 432   22  34445567888777  77766567888999988776543210    


Q ss_pred             ------------------cccC-CCCcHHHHHHHHHHHHhhchhhH---HHHHHHHHHHHHHHHHHHHHhCCCceeeecc
Q 011777          347 ------------------QFNT-FGGNPVCSAGGLAVLRVIDKERR---QAHCADVGSHLLGRLRTLQERHDIIGDVRGR  404 (477)
Q Consensus       347 ------------------~~~t-~~~~~~~~aaa~a~l~~l~~~~~---~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~  404 (477)
                                        ...+ +..+.....+..++++.+..+..   ..+.++.....+..+..... ...+.+...+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r  312 (388)
T d2ch1a1         234 VFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGL-DIFVKDPRHR  312 (388)
T ss_dssp             CGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTC-CBSSCSGGGB
T ss_pred             cccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhccc-ccccCCHHHh
Confidence                              0111 23345555666667766544332   22223333333333333211 1112222112


Q ss_pred             -ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHc-CceeeccC--CCCCEEEEe-CCCCCcHHHHHHHHHHHHHHHhh
Q 011777          405 -GLMVGMELVTDRKEKTPAKAETAVLFEKLREL-GVLVGKGG--LHGNVFRIK-PPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       405 -g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--~~~~~iRi~-p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                       ..+..+.+.        ......++...|+++ ||.+.+|.  ..++.|||+ .....|+|||+.++++|+++|+.
T Consensus       313 s~~v~~~~~p--------~g~~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~  381 (388)
T d2ch1a1         313 LPTVTGIMIP--------KGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKA  381 (388)
T ss_dssp             CTTEEEEECC--------TTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECC--------CCCCHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHh
Confidence             223445442        222245677777664 99888763  245789998 45567899999999999999974

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.71  E-value=2.3e-15  Score=146.30  Aligned_cols=315  Identities=18%  Similarity=0.144  Sum_probs=191.0

Q ss_pred             CHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccC
Q 011777          114 HPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG  193 (477)
Q Consensus       114 ~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG  193 (477)
                      +|+|.+|+.++.  ..|... ...+...+..+.|++++..+.+.++|+.|||+|+++++.-..  .++++++++..++.|
T Consensus        12 ~~~V~~am~~~~--~~hr~~-~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~--~~g~~vlv~~~G~f~   86 (348)
T d1iuga_          12 HPKALEALARPQ--LHHRTE-AAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF--APGERVLVPVYGKFS   86 (348)
T ss_dssp             CHHHHHHHHSCC--CCTTSH-HHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC--CTTCEEEEEECSHHH
T ss_pred             CHHHHHHhcCCC--CCCCCH-HHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhcc--cccccceeecchHHH
Confidence            788888875432  223221 223556778888888887777789999999999999987543  356678888887766


Q ss_pred             CcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchh
Q 011777          194 GSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGY  273 (477)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~  273 (477)
                      ...........         ..+.....+  +...+.         +++ +.   ..++..|++..+...+|.+.+    
T Consensus        87 ~~~~~~a~~~~---------~~~~~~~~~--~g~~~~---------~~~-~~---~~~~~~v~~~h~eTstG~~~~----  138 (348)
T d1iuga_          87 ERFYEIALEAG---------LVVERLDYP--YGDTPR---------PED-VA---KEGYAGLLLVHSETSTGALAD----  138 (348)
T ss_dssp             HHHHHHHHHTT---------CEEEEEECC--TTCCCC---------TTT-SC---CSSCSEEEEESEETTTTEECC----
T ss_pred             HHHHHHHHhcC---------ccccccccc--CCCccc---------ccc-cc---ccCCCeeEEEecchhhhhhcc----
Confidence            43322221100         011111111  111111         111 11   234556666666666788888    


Q ss_pred             HHHHHHHHHHhC--cEEEEcCcccCccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCHHHHHhhcccc---
Q 011777          274 LKLVYDIVRKAG--GVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPEIANVMAQKI---  346 (477)
Q Consensus       274 l~~l~~l~~~~g--illI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~~~~~~~~~~---  346 (477)
                      +++|.++|++|+  +++++|.+++ +|-   ....++.++  .|++++|  |++++--.+|+++.+++..+.+....   
T Consensus       139 i~~i~~~~~~~~~~~l~~vDavss-~g~---~~i~~d~~~--iD~~~~~sqK~l~gppG~~~v~~s~~~le~~~~~~~~~  212 (348)
T d1iuga_         139 LPALARAFKEKNPEGLVGADMVTS-LLV---GEVALEAMG--VDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYL  212 (348)
T ss_dssp             HHHHHHHHHHHCTTCEEEEECTTT-BTT---BCCCSGGGT--CSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTT
T ss_pred             HHHHHHHHHhhhccceeechhhhc-ccc---ccccccccc--CCEEEeccccceecCCceeeeeechHHHhhhccccccc
Confidence            999999999985  7899999987 432   233344444  5777655  99977566899999999888765321   


Q ss_pred             ----------cccCC-CCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc-ceeEEEEEee
Q 011777          347 ----------QFNTF-GGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGR-GLMVGMELVT  414 (477)
Q Consensus       347 ----------~~~t~-~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-g~~~~i~~~~  414 (477)
                                .+.+. +.+.....+..++|+.+.++ ..++. +..+.....+..+....+........ ..+..+.+  
T Consensus       213 dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~gl~~~~~~~s~~v~~~~~--  288 (348)
T d1iuga_         213 DLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHL-ALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYL--  288 (348)
T ss_dssp             CHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHH-HHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEEC--
T ss_pred             chhhhhhhhccCcccccccchHHHHHHHHHHHHHHH-HhHHH-HHHHHHHHHHhhhhhhhhhccChhhcCCeEEEEEC--
Confidence                      12233 33444556666888876543 22332 23333333444443333322111111 12334443  


Q ss_pred             CCCCCCccHHHHHHHHHHHHHcCceeeccC--CCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          415 DRKEKTPAKAETAVLFEKLRELGVLVGKGG--LHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                            |+......+.+.|.++|+.+.+|-  ..+..+||..--..+.+|++.+++.|+++++++
T Consensus       289 ------P~g~~~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~  347 (348)
T d1iuga_         289 ------PEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI  347 (348)
T ss_dssp             ------CTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             ------CCCCCHHHHHHHHHHCCeEEEcCccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence                  222235678889999999987762  235689998655789999999999999999863

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.69  E-value=6.6e-16  Score=151.80  Aligned_cols=318  Identities=17%  Similarity=0.171  Sum_probs=183.6

Q ss_pred             CCHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCC-CCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCc
Q 011777          113 CHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGN-LKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAY  191 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~-~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~y  191 (477)
                      .+++|.+||...  ...|... ...+...+..+.|+++++.+ ...|+|++|||++++.++....  .+++++++...++
T Consensus        29 v~~~Vl~am~~~--~~~hr~~-ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~--~~~~~~~~~~~~~  103 (377)
T d1vjoa_          29 AHPSVLQAMNVS--PVGHLDP-AFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAV--EPGDVVLIGVAGY  103 (377)
T ss_dssp             CCHHHHHHHSSC--CCCTTSH-HHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--CTTCEEEEEESSH
T ss_pred             CCHHHHHHhCcC--CCCCCCH-HHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhcc--ccccccceeeech
Confidence            368888776321  1223221 23456788888898888643 3578899999999999987653  3566677766666


Q ss_pred             cCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCc
Q 011777          192 HGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAP  271 (477)
Q Consensus       192 hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~  271 (477)
                      ++............         .......  .......      .+..+....   ..++..+.+..+.+.+|.+.+  
T Consensus       104 ~~~~~~~~~~~~~~---------~~~~~~~--~~~~~~~------~~~~~~~~~---~~~~~~v~~~~~~~~tg~~~~--  161 (377)
T d1vjoa_         104 FGNRLVDMAGRYGA---------DVRTISK--PWGEVFS------LEELRTALE---THRPAILALVHAETSTGARQP--  161 (377)
T ss_dssp             HHHHHHHHHHHTTC---------EEEEEEC--CTTCCCC------HHHHHHHHH---HHCCSEEEEESEETTTTEECC--
T ss_pred             hhhhhhhhhhhhcc---------ccccccc--CCCCccc------chhhhhhhh---cCcceeeeeeeeeccceeeec--
Confidence            55432222211100         1111111  1111111      123332222   135566777777788898888  


Q ss_pred             hhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCHHHHHhhccccc--
Q 011777          272 GYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPEIANVMAQKIQ--  347 (477)
Q Consensus       272 ~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~~~~~~~~~~~--  347 (477)
                        ++++.++|+++|+++++|.+|+ +|..   .  ++......|++++|  |+++++..+|+++.+++..+.......  
T Consensus       162 --i~~i~~~~~~~g~~~~vDa~~~-~g~~---~--~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~  233 (377)
T d1vjoa_         162 --LEGVGELCREFGTLLLVDTVTS-LGGV---P--IFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKV  233 (377)
T ss_dssp             --CTTHHHHHHHHTCEEEEECTTT-TTTS---C--CCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCC
T ss_pred             --hhhhhhhhhhccceEEEecchh-hhhh---h--hcccccccceeeecccccccCCCEEEEecchhhHHhhhhccCCCC
Confidence              8899999999999999999997 4322   2  23334455766655  777766677888899887775443210  


Q ss_pred             -----------------ccCC-CCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc-c
Q 011777          348 -----------------FNTF-GGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGR-G  405 (477)
Q Consensus       348 -----------------~~t~-~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~-g  405 (477)
                                       ..+. ..+...+.+..++++.+..   +...++.++...++.+.+.+..  ...+.....+ .
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~rs~  311 (377)
T d1vjoa_         234 ANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIG--LSLHVEKEYRLP  311 (377)
T ss_dssp             SCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT--CCBSSCGGGBCS
T ss_pred             cceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhccC--ceeecChHhcCC
Confidence                             0111 2223333444444444433   3344555555666666665532  1121111111 2


Q ss_pred             eeEEEEEeeCCCCCCccHHHHHHHHHHHH-HcCceeeccC--CCCCEEEEeC-CCCCcHHHHHHHHHHHHHHHh
Q 011777          406 LMVGMELVTDRKEKTPAKAETAVLFEKLR-ELGVLVGKGG--LHGNVFRIKP-PMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       406 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~--~~~~~iRi~p-~~~~t~e~i~~~l~~l~~~l~  475 (477)
                      .++.+.+        |+.....++...|+ +.||.+..|.  ..++.|||++ ....|+||||+++++|+++++
T Consensus       312 ~v~~~~~--------p~~~~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~  377 (377)
T d1vjoa_         312 TLTTVCI--------PDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR  377 (377)
T ss_dssp             SEEEEEC--------CTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred             eEEEEEC--------CCCCCHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence            2333333        11122456777765 4599987652  2357899985 566789999999999999874

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2.8e-15  Score=150.90  Aligned_cols=311  Identities=9%  Similarity=-0.039  Sum_probs=182.6

Q ss_pred             HHHHHHHHhhCCCC-CCEEEEeCChHHHHHHHHHHHH-hccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeee
Q 011777          141 ADFAEALASKMPGN-LKVVYFVNSGTEANELAMLMAR-LSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHH  218 (477)
Q Consensus       141 ~~l~~~La~~~~~~-~~~v~~~~sGseA~~~Al~~ar-~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~  218 (477)
                      .++.++++++++.+ ....+++++|+++...++.+++ ....+.+.|+....-|.....+....+...          ..
T Consensus        97 ~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~----------~~  166 (445)
T d3bc8a1          97 NSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEP----------VV  166 (445)
T ss_dssp             HHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEE----------EE
T ss_pred             HHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCee----------EE
Confidence            35666777766533 2467889999987776665543 333333444445555766554444433211          11


Q ss_pred             ec-CCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCc
Q 011777          219 VV-NPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGF  297 (477)
Q Consensus       219 ~~-~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gf  297 (477)
                      +. .++......+      +++|+++|+....+.+++|++...+...|.+.+    +++|.++|++||+++|+|+++.++
T Consensus       167 v~~~~~~~~~~id------~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~~~~~~~~~l~vD~a~~~~  236 (445)
T d3bc8a1         167 IENVLEGDELRTD------LKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQ  236 (445)
T ss_dssp             ECCEEETTEEECC------HHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTT
T ss_pred             EEeeccCcccccC------HHHHHHHHHhccccCeEEEEEeCCCCCCeeehh----HHHHHHHHHHhCCcEEEEccchhh
Confidence            10 0111111112      588888887544456888888887777887776    999999999999999999998743


Q ss_pred             cC-CCC-CCccccccCCCcceeeec--ccccCccceEEEEeC-HHHHHhhcccccccCCCCcHHHHHHHHHHHHhhchhh
Q 011777          298 GR-TGS-HYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTT-PEIANVMAQKIQFNTFGGNPVCSAGGLAVLRVIDKER  372 (477)
Q Consensus       298 gr-~G~-~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~  372 (477)
                      -. ... ..+.....  ..|+++++  |.++++...|+++.+ ..+.+.+.....+.......+.+.+.+..+..-....
T Consensus       237 ~~~~~~~~~~~~~~~--~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  314 (445)
T d3bc8a1         237 SSKCMHLIQQGARVG--RIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRK  314 (445)
T ss_dssp             CHHHHHHHHHHHHHS--CCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccccchhccCcC--CcceEEecCccccccCCCCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHhhhcchh
Confidence            11 000 01111111  24666654  988876667777776 4455544432222222223333333333332222245


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCC-ceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeecc--------
Q 011777          373 RQAHCADVGSHLLGRLRTLQERHDI-IGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG--------  443 (477)
Q Consensus       373 ~~~~~~~~~~~l~~~L~~l~~~~~~-~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~--------  443 (477)
                      ..++..++.++++++|.++...++. +...+.......+.+......   ......++...|.+.||-....        
T Consensus       315 ~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~---~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~  391 (445)
T d3bc8a1         315 LLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGH---HDKAVTQLGSMLFTRQVSGARAVPLGNVQT  391 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSS---SSCHHHHHHHHHHHTTCCSCEEECSCCEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeecccc---CCCCHHHHHHHHHHcCCCcceeeccccccc
Confidence            5667777888999999988766642 334444444445544322111   1123456777788888732110        


Q ss_pred             ---------C-----CCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          444 ---------G-----LHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       444 ---------~-----~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                               +     ...+.+|+.++..+|++|||+++++|++++++
T Consensus       392 i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~  438 (445)
T d3bc8a1         392 VSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNI  438 (445)
T ss_dssp             ETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHH
Confidence                     0     11246899999999999999999999999875

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=1.3e-13  Score=138.10  Aligned_cols=331  Identities=15%  Similarity=0.020  Sum_probs=187.8

Q ss_pred             CCCHHHHHHHHHHHhhccccccccC--ChHHHHHHHHHHhhCCCCC-----CEEEEeCChHHHHHHHHHHHHhcc-----
Q 011777          112 HCHPDVLNAIFEQSKLLQHATTIYL--HHAIADFAEALASKMPGNL-----KVVYFVNSGTEANELAMLMARLST-----  179 (477)
Q Consensus       112 h~~p~v~~Av~~~l~~~~~~~~~~~--~~~~~~l~~~La~~~~~~~-----~~v~~~~sGseA~~~Al~~ar~~~-----  179 (477)
                      +.+|++.+.+.+.+++-......|+  .+...++..+|+++++...     ..-.+|.||||||..|+..+|...     
T Consensus        65 ~~~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~  144 (450)
T d1pmma_          65 WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRME  144 (450)
T ss_dssp             CCCHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhh
Confidence            3578998888887765322112222  2345667778888875311     124799999999999999887521     


Q ss_pred             -----CCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeE
Q 011777          180 -----GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAG  254 (477)
Q Consensus       180 -----~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~  254 (477)
                           ....+++. ...|-...-+....+.          +...++.. +.++..+      .++|+++++    +++++
T Consensus       145 ~~g~~~~~~~~~~-~~~H~s~~Kaa~~~gi----------~~~~v~~~-~~~~~~d------~~~L~~~i~----~~t~~  202 (450)
T d1pmma_         145 AAGKPTDKPNLVC-GPVQICWHKFARYWDV----------ELREIPMR-PGQLFMD------PKRMIEACD----ENTIG  202 (450)
T ss_dssp             HHTCCCSCCEEEE-SSCCHHHHHHHHHTTC----------EEEECCCB-TTBCSCC------HHHHHHHCC----TTEEE
T ss_pred             hcCCCCCCceEEe-cccHHHHHHHHHHcCC----------CceEeeec-CCCCcCc------HHHHHHHhh----hCceE
Confidence                 12234443 4456443322222111          12222211 1112222      478888876    56778


Q ss_pred             EEecccCCCCCeeeCCchhHHHHHHH------HHHhCcEEEEcCcccCccC--CC-CCCccccccCC-Ccceeeec--cc
Q 011777          255 FIAETIQGVGGAVELAPGYLKLVYDI------VRKAGGVCIADEVQTGFGR--TG-SHYWGFETQGV-IPDIVTMA--KG  322 (477)
Q Consensus       255 vi~epi~~~~G~~~~~~~~l~~l~~l------~~~~gillI~DEv~~gfgr--~G-~~~~~~~~~gv-~pDivt~s--K~  322 (477)
                      |++.-....+|.+.|    +++|.++      |+++|+++++|.++.|+--  .- ...|.   +++ ..|.++++  |.
T Consensus       203 Vv~t~gtt~tG~~dp----v~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~---~~~~~aDSi~~s~HK~  275 (450)
T d1pmma_         203 VVPTFGVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWD---FRLPRVKSISASGHKF  275 (450)
T ss_dssp             EECBBSCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCS---TTSTTEEEEEEETTTT
T ss_pred             EEeeeeeccCCCccc----cchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhh---hcccceeEeecChhhc
Confidence            877776677777766    6655555      4668999999999987621  10 01111   122 36777776  87


Q ss_pred             ccCccceEEEEeCHHHH--Hhhccc---------ccccCCCCcHHHHHHHHHHHHhhchh---hHHHHHHHHHHHHHHHH
Q 011777          323 IGNGLPLGAVVTTPEIA--NVMAQK---------IQFNTFGGNPVCSAGGLAVLRVIDKE---RRQAHCADVGSHLLGRL  388 (477)
Q Consensus       323 lg~G~pig~v~~~~~~~--~~~~~~---------~~~~t~~~~~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L  388 (477)
                      +.+.+.+|+++.+.+-.  ..+...         .....++.+.....+..+++..+..+   +..++..++.+++.++|
T Consensus       276 ~~~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L  355 (450)
T d1pmma_         276 GLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEI  355 (450)
T ss_dssp             TCCCSSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            77778899999975422  111100         01112222333334445555554443   45566666777777776


Q ss_pred             HHHHHhCCCceeeec-cc-eeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeecc-----CCCCCEEEEeCCCCCcHH
Q 011777          389 RTLQERHDIIGDVRG-RG-LMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG-----GLHGNVFRIKPPMCFTKD  461 (477)
Q Consensus       389 ~~l~~~~~~~~~v~g-~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-----~~~~~~iRi~p~~~~t~e  461 (477)
                      ++.. ...++....+ .+ ..+.+.+.....    .......+.+.|.++|..+...     .....++|+.+.-..|++
T Consensus       356 ~~~~-~~el~~~~~p~~~l~~V~Fr~~~~~~----~~~~~~~l~~~L~~~Gw~v~~~~~p~~~~~~~~lRvvv~~~~t~e  430 (450)
T d1pmma_         356 AKLG-PYEFICTGRPDEGIPAVCFKLKDGED----PGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMD  430 (450)
T ss_dssp             HTTS-CEEEEEECCTTTBSSEEEEEECTTCC----CSSCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHH
T ss_pred             HhCC-CeEEEeCCCCCCceEEEEEecCCccc----CCCCHHHHHHHHHHcCCeeeccCcCCCcCCcEEEEEEccCCCCHH
Confidence            6541 1112221111 11 234555533211    1112456888999999766321     112357999988889999


Q ss_pred             HHHHHHHHHHHHHhh
Q 011777          462 DADFLVDALDYSMSK  476 (477)
Q Consensus       462 ~i~~~l~~l~~~l~~  476 (477)
                      ++|++++.|++++++
T Consensus       431 ~~d~lv~dl~~~v~~  445 (450)
T d1pmma_         431 FAELLLEDYKASLKY  445 (450)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998865

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.54  E-value=2.8e-13  Score=132.75  Aligned_cols=311  Identities=16%  Similarity=0.119  Sum_probs=184.1

Q ss_pred             CHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccC
Q 011777          114 HPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG  193 (477)
Q Consensus       114 ~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG  193 (477)
                      .++-.+++.+.++...++.    -+...+|+++|+++++.  +.+++++|||.|+.+|++.. ...++++||+...+|+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~----G~~v~~~E~~la~~~g~--~~ai~~~sgt~Al~~al~al-~~~~gdeVi~~~~~~~~   83 (376)
T d1mdoa_          11 GAEELAAVKTVLDSGWITT----GPKNQELEAAFCRLTGN--QYAVAVSSATAGMHIALMAL-GIGEGDEVITPSMTWVS   83 (376)
T ss_dssp             CHHHHHHHHHHHHHTCCSS----SHHHHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCHH
T ss_pred             CHHHHHHHHHHHhcCCCcC----CHHHHHHHHHHHHHHCc--CeEEEeCCHHHHHHHHHHHh-CCCCCCEEEEecccccc
Confidence            3566788888887754432    35678999999999965  68999999999999999854 24466789998888877


Q ss_pred             CcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchh
Q 011777          194 GSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGY  273 (477)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~  273 (477)
                      ........+..+.+..          ..++    .+..|    .++|+++++    +++++|++....   |...+    
T Consensus        84 ~~~ai~~~g~~pv~~d----------~~~~----~~~~d----~~~l~~~i~----~~tkaIi~~h~~---G~~~~----  134 (376)
T d1mdoa_          84 TLNMIVLLGANPVMVD----------VDRD----TLMVT----PEHIEAAIT----PQTKAIIPVHYA---GAPAD----  134 (376)
T ss_dssp             HHHHHHHTTCEEEEEC----------BCTT----TCCBC----HHHHHHHCC----TTEEEECCBCGG---GCCCC----
T ss_pred             cccchhccccceeeec----------cccc----ccCCC----HHHHHHhcC----CCCeEEEEeCCC---CCccc----
Confidence            6666555543221110          0111    11112    588888886    467888876544   43444    


Q ss_pred             HHHHHHHHHHhCcEEEEcCcccCccCC--CCCCccccccCCCcceeee--cccccCccceEEEEeC-HHHHHhhcccc--
Q 011777          274 LKLVYDIVRKAGGVCIADEVQTGFGRT--GSHYWGFETQGVIPDIVTM--AKGIGNGLPLGAVVTT-PEIANVMAQKI--  346 (477)
Q Consensus       274 l~~l~~l~~~~gillI~DEv~~gfgr~--G~~~~~~~~~gv~pDivt~--sK~lg~G~pig~v~~~-~~~~~~~~~~~--  346 (477)
                      +++|.++|++||++||.|.+|+ +|-.  | ...  ..+|.  .+.+|  .|.++.|- -|+++++ +++.+.+....  
T Consensus       135 ~~~i~~i~~~~~i~vIeD~a~a-~g~~~~~-~~~--g~~g~--~~~Sf~~~K~l~~g~-GG~i~t~~~~l~~~~~~~~~~  207 (376)
T d1mdoa_         135 LDAIYALGERYGIPVIEDAAHA-TGTSYKG-RHI--GARGT--AIFSFHAIKNITCAE-GGIVVTDNPQFADKLRSLKFH  207 (376)
T ss_dssp             HHHHHHHHHHHTCCBCEECTTC-TTCEETT-EET--TSSSE--EEEECCTTSSSCSSS-CEEEEESCHHHHHHHHHHTBT
T ss_pred             hhHHHHHHHhcCceEEeccchh-ccCeeCC-eec--ccccC--ccccCCCcCCCCCCC-CCEEEEechhHHHHHHhhccc
Confidence            8999999999999999999997 4321  1 110  11221  23333  38887432 2777775 45555443221  


Q ss_pred             ----------------------cccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhC-CCc-eeee
Q 011777          347 ----------------------QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERH-DII-GDVR  402 (477)
Q Consensus       347 ----------------------~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~-~~~-~~v~  402 (477)
                                            .+..+..+.+.++.+...|+.+  +++.++.++..+++.+.|+++.... ... ....
T Consensus       208 g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~--~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~  285 (376)
T d1mdoa_         208 GLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMADLPFQPLSLPSWEHI  285 (376)
T ss_dssp             TEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEE
T ss_pred             CCcccccccccccccccccchhcccccccchhhhhhhhhhhhhh--hHHHHHHhhhhhhhhhhccccccccccccccccc
Confidence                                  0122334566666666666543  4556666777777777776542110 000 0011


Q ss_pred             ccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC----------------C-------CCCEEEEeCCCCCc
Q 011777          403 GRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG----------------L-------HGNVFRIKPPMCFT  459 (477)
Q Consensus       403 g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------------~-------~~~~iRi~p~~~~t  459 (477)
                       ......+........    ....+++.+.|.++||-++..-                .       ..+.+.+=.....|
T Consensus       286 -~~~~~~~~~~~~~~~----~~~Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt  360 (376)
T d1mdoa_         286 -HAWHLFIIRVDEARC----GITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMT  360 (376)
T ss_dssp             -CCCSCEEEECCHHHH----SSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCC
T ss_pred             -ccccccccccccccc----hhhHHHHHHHHHHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCC
Confidence             111111222110000    0012468899999999765320                0       12446663334568


Q ss_pred             HHHHHHHHHHHHHHH
Q 011777          460 KDDADFLVDALDYSM  474 (477)
Q Consensus       460 ~e~i~~~l~~l~~~l  474 (477)
                      ++|+++.++.|.+++
T Consensus       361 ~~ei~~I~~~i~~i~  375 (376)
T d1mdoa_         361 ESDFDRVITALHQIA  375 (376)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999999875

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.53  E-value=1.5e-12  Score=126.74  Aligned_cols=292  Identities=15%  Similarity=0.131  Sum_probs=180.4

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +.+++..+|....|+++|+++.+.  +..+.++||..|+..++....  ..++.||+....|+|..........      
T Consensus        59 ~~Y~R~~nPt~~~LE~~la~LEgg--~~a~~~sSGMaAi~~~l~~l~--~~Gd~iv~~~~~Yg~t~~l~~~~~~------  128 (398)
T d1qgna_          59 FEYGRYGNPTTVVLEEKISALEGA--ESTLLMASGMCASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETILP------  128 (398)
T ss_dssp             CCBGGGCCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHHS--CSSCEEEEETTSCHHHHHHHHHTGG------
T ss_pred             ceecCCCChHHHHHHHHHHHHhCC--ceEEEecCcchHHHHHHhhcc--cccccccccccccchhhhhhccccc------
Confidence            445566789999999999999754  678999999999999887542  3678899998888775433222111      


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHH-HHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQ-DHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVC  288 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le-~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill  288 (477)
                         ..|+....+..       .+    .++.+ .++.    +++++|++|.+.|+...++.    +++|.++|+++|+++
T Consensus       129 ---~~gi~~~~~~~-------~~----~~~~~~~~~~----~~t~~v~~EspsNP~l~v~D----i~~ia~ia~~~g~~~  186 (398)
T d1qgna_         129 ---KMGITATVIDP-------AD----VGALELALNQ----KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALV  186 (398)
T ss_dssp             ---GGTCEEEEECS-------SC----HHHHHHHHHH----SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEE
T ss_pred             ---ccccccccccc-------cc----hhhhhhhhcc----ccceEEEccCccccccccch----HHHHHHHHhhcCCEE
Confidence               11222211111       01    13333 3333    58899999999888876666    999999999999999


Q ss_pred             EEcCcccCccCCCCCCccccccCCCccee--eecccccC-c-cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHHH
Q 011777          289 IADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-G-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLAV  364 (477)
Q Consensus       289 I~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~  364 (477)
                      |+|.....       +..+.-...-.|++  +++|-++| | .-.|+++.++++...+........-..+|..+...+..
T Consensus       187 vVDnT~at-------P~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rg  259 (398)
T d1qgna_         187 CIDGTFAT-------PLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRG  259 (398)
T ss_dssp             EEECTTTC-------TTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred             Eecceeec-------cccCCchhhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhhcccCCCcCCHHHHHHHHhc
Confidence            99998651       22233333445766  57799997 4 66788889998877765432222223457776666665


Q ss_pred             HHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCcee------------------eeccceeEEEEEeeCCCCCCccHHHH
Q 011777          365 LRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGD------------------VRGRGLMVGMELVTDRKEKTPAKAET  426 (477)
Q Consensus       365 l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~~~~~~~~~~~~~~~  426 (477)
                      |+.+.  -..++..++...+.+.|+    .+|.+..                  ..|.|.++.+++..       ....+
T Consensus       260 l~TL~--lRm~~~~~nA~~lA~~L~----~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g-------~~~~a  326 (398)
T d1qgna_         260 MKTLH--LRVQQQNSTALRMAEILE----AHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDG-------DLLTT  326 (398)
T ss_dssp             GGGHH--HHHHHHHHHHHHHHHHHH----TCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESS-------CHHHH
T ss_pred             chHHH--HHHHHHHHHHHHHHHHHH----hCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecC-------CHHHH
Confidence            55432  223444555555555554    3443322                  23457777777632       12334


Q ss_pred             HHHHHHHH--HcCceee--------cc---------------CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          427 AVLFEKLR--ELGVLVG--------KG---------------GLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       427 ~~~~~~l~--~~Gv~v~--------~~---------------~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      .++++.|+  ..+.-.+        |.               |..++.|||+..+    |+++.+++-|+++|+++
T Consensus       327 ~~f~~~L~l~~~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGl----Ed~eDLi~Dl~~AL~~i  398 (398)
T d1qgna_         327 AKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV----EDFDDLKADILQALDSI  398 (398)
T ss_dssp             HHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS----SCHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCcceeeeCCCCCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHhcC
Confidence            55666553  1222111        10               1234789998775    45566677777777653

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.52  E-value=6.3e-13  Score=134.11  Aligned_cols=318  Identities=10%  Similarity=-0.036  Sum_probs=167.8

Q ss_pred             ChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcc-cccccccC-CCCCC-CCCC
Q 011777          137 HHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSS-GTIGLTAL-NTWKY-PIPQ  213 (477)
Q Consensus       137 ~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~-~~~~~~~~-~~~~~-~~~~  213 (477)
                      .....++.++++++++.  +.++|+.+||+++..|+..+.. .+++.||+.+ ..|.... ....+.+. ..+.. ....
T Consensus        65 ~~~i~eae~~~A~~~ga--~~a~f~~~Gtt~~n~a~i~a~~-~~gd~Vi~~~-~~H~Sv~~~~~~l~~~~~~~~~~~~~~  140 (462)
T d1c4ka2          65 EGPAVAAEKHAARVYNA--DKTYFVLGGSSNANNTVTSALV-SNGDLVLFDR-NNHKSVYNSALAMAGGRPVYLQTNRNP  140 (462)
T ss_dssp             BTHHHHHHHHHHHHTTC--SEEEEESSHHHHHHHHHHHHHC-CTTCEEEEET-TCCHHHHHHHTTTTCCEEEEECEEECT
T ss_pred             CHHHHHHHHHHHHHhCC--CeEEEECCchHHHHHHHHHHhc-CCCCeEEecc-cchHHHHHHHHHHhcCCceeeeccccc
Confidence            45688999999999964  7899999998888777655543 3455565554 4454432 22222211 11111 0001


Q ss_pred             CCeeeecCCCCcCCCCCCCHHHHHHHHHHHHh-----ccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEE
Q 011777          214 GEIHHVVNPDPYHGSFGSDAARYAQDLQDHID-----FGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVC  288 (477)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~-----~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gill  288 (477)
                      .+......+.    .+.      .+.+++.+.     .....++..+++...++..|.+.+    +++|.++|++||++|
T Consensus       141 ~g~~~~~~~~----~~~------~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d----l~~I~~ia~~~g~~l  206 (462)
T d1c4ka2         141 YGFIGGIYDS----DFD------EKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN----AHEVVKRIGHLCDYI  206 (462)
T ss_dssp             TCCEEEECGG----GSC------HHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC----HHHHHHHHGGGBSEE
T ss_pred             ccccCCCChH----Hhh------HHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh----HHHHHHHHHHcCCEE
Confidence            1111110000    011      122222211     111233444555566677888888    999999999999999


Q ss_pred             EEcCcccCccCCCCCCccc--cc----cC--CCcceeee--cccccCccceEEEEeCHHHHHhh---------cc-cccc
Q 011777          289 IADEVQTGFGRTGSHYWGF--ET----QG--VIPDIVTM--AKGIGNGLPLGAVVTTPEIANVM---------AQ-KIQF  348 (477)
Q Consensus       289 I~DEv~~gfgr~G~~~~~~--~~----~g--v~pDivt~--sK~lg~G~pig~v~~~~~~~~~~---------~~-~~~~  348 (477)
                      ++||++....... ..+..  ..    .+  ...|++++  .|.+++.-.-+.+..+.+.....         .. ....
T Consensus       207 ~vD~A~~~~~~~~-~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (462)
T d1c4ka2         207 EFDSAWVGYEQFI-PMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLF  285 (462)
T ss_dssp             EEECTTCCGGGSS-GGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHH
T ss_pred             EEechhhcccccc-CcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccccccchhhhHHHHHHhhhhc
Confidence            9999986321111 11110  11    11  12477765  49988522223443443322111         10 0112


Q ss_pred             cCCCCcHHHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCC-c-eeee---------------------
Q 011777          349 NTFGGNPVCSAGGLAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDI-I-GDVR---------------------  402 (477)
Q Consensus       349 ~t~~~~~~~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~-~-~~v~---------------------  402 (477)
                      .|.+.+...++...++...+..   +++.++..++.++++++++++...+.. . ..+.                     
T Consensus       286 ~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  365 (462)
T d1c4ka2         286 MSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRF  365 (462)
T ss_dssp             SCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBC
T ss_pred             ccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhcc
Confidence            3445555555555555655543   456677778888888888876321100 0 0000                     


Q ss_pred             -------------ccceeE---EEEEeeCCC-----CCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHH
Q 011777          403 -------------GRGLMV---GMELVTDRK-----EKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKD  461 (477)
Q Consensus       403 -------------g~g~~~---~i~~~~~~~-----~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e  461 (477)
                                   ....++   .+.+.....     ...........+.+.|.++||.+...+  .+.+||.++..+|++
T Consensus       366 ~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI~~e~~~--~~~i~~~~s~~~T~e  443 (462)
T d1c4ka2         366 EKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSD--LNSILFLMTPAETPA  443 (462)
T ss_dssp             CTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEEC--SSEEEEECCTTCCHH
T ss_pred             CCcchhccccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCCeeeccC--CCeEEEEecCCCCHH
Confidence                         000000   011111000     000001124567788889999775443  578999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 011777          462 DADFLVDALDYSMS  475 (477)
Q Consensus       462 ~i~~~l~~l~~~l~  475 (477)
                      |+|+++++|.+..+
T Consensus       444 did~li~aL~ei~r  457 (462)
T d1c4ka2         444 KMNNLITQLLQLQR  457 (462)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998754

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.51  E-value=1.1e-12  Score=127.39  Aligned_cols=219  Identities=14%  Similarity=0.048  Sum_probs=142.8

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +.+++..+|....|+++|+++.+.  +..+.++||..|+..++....  ..+++||+.+..|+|..........      
T Consensus        51 ~~Y~R~~nPT~~~LE~~la~LEg~--~~a~~~~SGmaAi~~~l~~l~--~~Gd~vl~~~~~Yg~t~~l~~~~~~------  120 (392)
T d1gc0a_          51 HFYSRISNPTLNLLEARMASLEGG--EAGLALASGMGAITSTLWTLL--RPGDEVLLGNTLYGCTFAFLHHGIG------  120 (392)
T ss_dssp             ------CCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC--CTTCEEEEESSCCSHHHHHHHHTGG------
T ss_pred             ceecCCCChHHHHHHHHHHHHhCC--cceeehhhHHHHHHHHHHhhc--cCCCeeecccccchhhhhhhhhhhc------
Confidence            334566789999999999999854  678889999999998887553  3678999999999886543322211      


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                         ..|+....++      .. |    .++++++++    +++++|++|.+.|+...++.    +++|.++|+++|+++|
T Consensus       121 ---~~Gi~~~~~d------~~-d----~~~~~~ai~----~~t~lv~~Esp~NP~l~v~D----i~~i~~ia~~~g~~~v  178 (392)
T d1gc0a_         121 ---EFGVKLRHVD------MA-D----LQALEAAMT----PATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVV  178 (392)
T ss_dssp             ---GGTCEEEEEC------TT-C----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEE
T ss_pred             ---cCCcccccCC------cc-C----HHHHHHhCC----CCCeEEEecccccceeeecc----hHHHHHHHHhcCCEEE
Confidence               1133222111      01 1    477888876    57899999999888887777    9999999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCccee--eecccccC-c-cceEEEEeCHHHHHhhccc--ccccCCCCcHHHHHHHHH
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-G-LPLGAVVTTPEIANVMAQK--IQFNTFGGNPVCSAGGLA  363 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pig~v~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~a  363 (477)
                      +|..++.       +..+.-...-.|++  +.+|-++| | .-.|.++++++.+...+..  .....-..+|..+...+.
T Consensus       179 vDnT~at-------P~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p~da~ll~r  251 (392)
T d1gc0a_         179 VDNTYCT-------PYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMR  251 (392)
T ss_dssp             EECTTTH-------HHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHH
T ss_pred             EecCccC-------ccccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCChhhHHHHHh
Confidence            9998751       22222223345666  57799997 4 6778899998877654321  111122345777766666


Q ss_pred             HHHhhchhhHHHHHHHHHHHHHHHHH
Q 011777          364 VLRVIDKERRQAHCADVGSHLLGRLR  389 (477)
Q Consensus       364 ~l~~l~~~~~~~~~~~~~~~l~~~L~  389 (477)
                      .|+.+.  -..++..++...+.+.|+
T Consensus       252 gl~TL~--lRm~~~~~nA~~lA~~L~  275 (392)
T d1gc0a_         252 GIKTLN--LRMDRHCANAQVLAEFLA  275 (392)
T ss_dssp             HHTTHH--HHHHHHHHHHHHHHHHHH
T ss_pred             ccccHH--HHHHHHHHHHHHHHHHHH
Confidence            665442  234444555555555544

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.50  E-value=6e-12  Score=126.60  Aligned_cols=304  Identities=12%  Similarity=0.010  Sum_probs=175.8

Q ss_pred             HHHHHHHHHHhhCCCC---------CCEEEEeCChHHHHHHHHHHHHhcc---------C-------CceEEEEccCccC
Q 011777          139 AIADFAEALASKMPGN---------LKVVYFVNSGTEANELAMLMARLST---------G-------NLGMIALRNAYHG  193 (477)
Q Consensus       139 ~~~~l~~~La~~~~~~---------~~~v~~~~sGseA~~~Al~~ar~~~---------~-------~~~ii~~~~~yhG  193 (477)
                      ...++.++|+++++.+         ...-++++|||+||..|+..||...         +       +..+++....-|-
T Consensus       114 iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~  193 (476)
T d1js3a_         114 LETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHS  193 (476)
T ss_dssp             HHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCH
T ss_pred             HHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccH
Confidence            3456778888887432         1246799999999999999998631         0       1234455445554


Q ss_pred             CcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhcc--CCCCeeEEEecccCCCCCeeeCCc
Q 011777          194 GSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFG--TSGKVAGFIAETIQGVGGAVELAP  271 (477)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~a~vi~epi~~~~G~~~~~~  271 (477)
                      ...-+....+.          ++..++..  .....+      .++|++.|++.  ....+.+|+..--..+.|.+-|  
T Consensus       194 Si~ka~~~lGl----------~~~~v~~d--~~~~md------~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDp--  253 (476)
T d1js3a_         194 SVERAGLIGGV----------KLKAIPSD--GKFAMR------ASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN--  253 (476)
T ss_dssp             HHHHHHHHHTC----------EEEEECCC--TTSCCC------HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC--
T ss_pred             HHHHHHHhcCc----------eEEEeccC--CCCCcC------HHHHHHHHHHHHhcCCCcEEEeecCCCccceeecc--
Confidence            43333332221          22333221  122222      47788777632  2334566666666667788888  


Q ss_pred             hhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCC-Ccceeeec--ccccCccceEEEEeCHH--HHHhhccc-
Q 011777          272 GYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGV-IPDIVTMA--KGIGNGLPLGAVVTTPE--IANVMAQK-  345 (477)
Q Consensus       272 ~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv-~pDivt~s--K~lg~G~pig~v~~~~~--~~~~~~~~-  345 (477)
                        +++|.++|++||+++++|.++.|+...-.+ ......|+ ..|.+++.  |.++..+..|+++.++.  +...+... 
T Consensus       254 --l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~-~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~  330 (476)
T d1js3a_         254 --LLEVGPICHEEDIWLHVDAAYAGSAFICPE-FRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDP  330 (476)
T ss_dssp             --HHHHHHHHHHTTCEEEEECTTGGGGGGSTT-TGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC---
T ss_pred             --HHHHHHHHHhcCcEEEEecccchhhhhhcc-hhhhhcCCcccceeeecCccccccCCcceeecccchHHHHHHHhcCh
Confidence              999999999999999999999887432211 11122344 36888764  98887788899988753  22222110 


Q ss_pred             ------c---c------ccCC-CCcHHHHHHHHHHHHhhchhh---HHHHHHHHHHHHHHHHHHHHHhCCCceee-eccc
Q 011777          346 ------I---Q------FNTF-GGNPVCSAGGLAVLRVIDKER---RQAHCADVGSHLLGRLRTLQERHDIIGDV-RGRG  405 (477)
Q Consensus       346 ------~---~------~~t~-~~~~~~~aaa~a~l~~l~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-~g~g  405 (477)
                            .   .      ..+. ++-+........+++.+..+.   .+++..++.+++.+.|++    .+.+.-+ +..-
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~----~~~fel~~~p~l  406 (476)
T d1js3a_         331 VYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQ----DPRFEVCAEVTL  406 (476)
T ss_dssp             ---------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CTTEEECSCCCS
T ss_pred             hhhccccccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc----CCCeEEECCCce
Confidence                  0   0      0111 111222223344555544443   445555556666665554    3322211 2223


Q ss_pred             eeEEEEEeeCCCCCCccHHHHHHHHHHHHHcC-ceeeccCCCC-CEEEEeCC-CCCcHHHHHHHHHHHHHHHhh
Q 011777          406 LMVGMELVTDRKEKTPAKAETAVLFEKLRELG-VLVGKGGLHG-NVFRIKPP-MCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       406 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~G-v~v~~~~~~~-~~iRi~p~-~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .++.|.+.       +......++.+.+.+.| +++.+....+ -++|++.. ..++++||+.+++.|++..++
T Consensus       407 ~iV~Fr~~-------~~d~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~  473 (476)
T d1js3a_         407 GLVCFRLK-------GSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAE  473 (476)
T ss_dssp             SEEEEEES-------SCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEcc-------CChHHHHHHHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            34455542       22334467888888888 4454432222 37899765 567899999999999988765

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.50  E-value=2e-12  Score=125.34  Aligned_cols=217  Identities=13%  Similarity=0.072  Sum_probs=136.3

Q ss_pred             cccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCC
Q 011777          131 ATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYP  210 (477)
Q Consensus       131 ~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~  210 (477)
                      .+++..+|....|+++|+++-++  +..+.++||..|+. ++. + ....+++||+....|.|........         
T Consensus        42 ~Y~R~~nPt~~~le~~la~LE~~--~~a~~fsSGMaAis-all-~-ll~~Gd~vv~~~~~Yg~t~~l~~~~---------  107 (380)
T d1ibja_          42 DYTRSGNPTRDALESLLAKLDKA--DRAFCFTSGMAALS-AVT-H-LIKNGEEIVAGDDVYGGSDRLLSQV---------  107 (380)
T ss_dssp             SBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHH-HHH-T-TSCTTCEEEEESSCCHHHHHHHHHT---------
T ss_pred             eeeCCCChHHHHHHHHHHHHcCC--ceEEehhhHHHHHH-HHH-H-hhCCCCEEEEEecccccccchhhhh---------
Confidence            34566789999999999998754  67889999999986 442 1 2345678888877775543222111         


Q ss_pred             CCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEE
Q 011777          211 IPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIA  290 (477)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~  290 (477)
                      .+..|+.......      . +    .++++++++    +++++|++|.+.|+...++.    +++|.++|+++|+++|+
T Consensus       108 ~~~~gi~~~~~d~------~-~----~~~~~~ai~----~~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~vV  168 (380)
T d1ibja_         108 VPRSGVVVKRVNT------T-K----LDEVAAAIG----PQTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLV  168 (380)
T ss_dssp             SGGGTCEEEEECT------T-S----HHHHHHHCC----SSEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEE
T ss_pred             hccccccccccCc------c-h----HHHHHHHhc----cCccEEEecccccccccccc----HHHHHHHHHHcCCeEEe
Confidence            1112332221111      0 1    467777775    58899999999888887777    99999999999999999


Q ss_pred             cCcccCccCCCCCCccccccCCCccee--eecccccC-c-cceEEEEeC-HHHHHhhcccccccCCCCcHHHHHHHHHHH
Q 011777          291 DEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-G-LPLGAVVTT-PEIANVMAQKIQFNTFGGNPVCSAGGLAVL  365 (477)
Q Consensus       291 DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l  365 (477)
                      |.....       ++.+.-.....|++  +++|-++| | .-.|+++.+ +++.+.+........-..+|..+...+..|
T Consensus       169 DnT~at-------P~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl  241 (380)
T d1ibja_         169 DNSIMS-------PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGI  241 (380)
T ss_dssp             ECTTTC-------TTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHH
T ss_pred             eccccc-------cccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcc
Confidence            998752       22222223335666  57799997 4 566777766 556665543322122224577666666666


Q ss_pred             HhhchhhHHHHHHHHHHHHHHHHH
Q 011777          366 RVIDKERRQAHCADVGSHLLGRLR  389 (477)
Q Consensus       366 ~~l~~~~~~~~~~~~~~~l~~~L~  389 (477)
                      +.+.  -..++..++...+.+.|+
T Consensus       242 ~Tl~--lRm~~~~~nA~~lA~~L~  263 (380)
T d1ibja_         242 KTMA--LRIEKQQENARKIAMYLS  263 (380)
T ss_dssp             TTHH--HHHHHHHHHHHHHHHHHH
T ss_pred             hhhh--hhHHHHHHHHHHHHHHHH
Confidence            5442  234444555555555554

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.49  E-value=3.2e-12  Score=124.23  Aligned_cols=219  Identities=14%  Similarity=0.062  Sum_probs=143.0

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +.+++..+|....|+++|+++.+.  +..+.++||..|+..++....  ..+++||+.++.|.|..........      
T Consensus        55 ~~Y~R~~nPT~~~LE~~la~LEgg--~~a~~~sSGmaAi~~~l~~ll--~~Gd~vi~~~~~Yg~t~~~~~~~l~------  124 (397)
T d1y4ia1          55 YIYTRLGNPTTDALEKKLAVLERG--EAGLATASGISAITTTLLTLC--QQGDHIVSASAIYGCTHAFLSHSMP------  124 (397)
T ss_dssp             SCCCTTSCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC--CTTCEEEEESSSCHHHHHHHHTHHH------
T ss_pred             ceeeCCCCHHHHHHHHHHHHHhCC--ccceeehHHHHHHHHHHhhcc--CCCCeeeeecccccccchhhhcccC------
Confidence            344566789999999999999754  578899999999988886443  3678899999998776443322110      


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                         ..|+....+..      . |    .+.++++|+    +++++|++|.+-|+...+..    +++|.++|+++|+++|
T Consensus       125 ---~~Gi~~~~vd~------~-d----~~~~~~~i~----~~Tklv~~Esp~NP~l~v~D----i~~i~~iA~~~gi~~v  182 (397)
T d1y4ia1         125 ---KFGINVRFVDA------G-K----PEEIRAAMR----PETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLV  182 (397)
T ss_dssp             ---HTTCEEEEECT------T-S----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEE
T ss_pred             ---CCceEeeccCC------C-C----HHHHHHhcC----CCCcEEEecCCcccceeecc----cHHHHHHhhcCCceEE
Confidence               01333221110      0 1    477888775    58999999998888776666    9999999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCccee--eecccccC-c-cceEEEEeCHHHHHhhccc--ccccCCCCcHHHHHHHHH
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-G-LPLGAVVTTPEIANVMAQK--IQFNTFGGNPVCSAGGLA  363 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pig~v~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~a  363 (477)
                      +|-....       ++.++-...-.|++  +++|-++| + .-.|+++++++.+...+..  .....-..+|..+...+.
T Consensus       183 vDnT~at-------P~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~r  255 (397)
T d1y4ia1         183 VDNTFMS-------PYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLR  255 (397)
T ss_dssp             EECTTTC-------TTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHH
T ss_pred             ecCcccC-------cccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHc
Confidence            9997652       22233223335666  57799997 4 6668999998877654321  111122345777766666


Q ss_pred             HHHhhchhhHHHHHHHHHHHHHHHHH
Q 011777          364 VLRVIDKERRQAHCADVGSHLLGRLR  389 (477)
Q Consensus       364 ~l~~l~~~~~~~~~~~~~~~l~~~L~  389 (477)
                      .|+.+.  -..++..++...+.+.|+
T Consensus       256 gl~TL~--lRm~~~~~nA~~lA~~L~  279 (397)
T d1y4ia1         256 GVKTLG--IRMERHCENALKIARFLE  279 (397)
T ss_dssp             HHTTHH--HHHHHHHHHHHHHHHHHH
T ss_pred             CcCcHH--HHHHHHHHHHHHHHHHHH
Confidence            665442  123444455555555554

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.49  E-value=2.8e-13  Score=132.16  Aligned_cols=318  Identities=11%  Similarity=-0.031  Sum_probs=164.0

Q ss_pred             CCHHHHHHHHHHHhhcc----------ccccccCChHHHHHHHHHHhhCCCCCC-EEEEeCChHHHHHHHHHHHHhccCC
Q 011777          113 CHPDVLNAIFEQSKLLQ----------HATTIYLHHAIADFAEALASKMPGNLK-VVYFVNSGTEANELAMLMARLSTGN  181 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~----------~~~~~~~~~~~~~l~~~La~~~~~~~~-~v~~~~sGseA~~~Al~~ar~~~~~  181 (477)
                      .+++|++||.+++....          |.+ ....+...+.++.|+++++...+ .|+|++|++++++.|+.... ..++
T Consensus        14 vp~~V~eam~~~~~~~~~~~~~~~~~sHRs-~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l-~~~~   91 (361)
T d2c0ra1          14 LPLEVLERAQAEFVDYQHTGMSIMEMSHRG-AVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNF-LKEG   91 (361)
T ss_dssp             CCHHHHHHHHHTSSSSTTSSSCGGGSCTTS-HHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHH-CCTT
T ss_pred             CCHHHHHHHHHHHhhhcccCccccccCcCC-HHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcc-ccCC
Confidence            37899999988764421          211 11235567889999999876433 68888877776655544332 2345


Q ss_pred             ceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccC
Q 011777          182 LGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQ  261 (477)
Q Consensus       182 ~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~  261 (477)
                      ++++...++..+.....+....           +...............      .+++++.+.   ...+..  ++.  
T Consensus        92 ~~~l~~~~g~~~~~~~~~~~~~-----------g~~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~--v~~--  147 (361)
T d2c0ra1          92 QTANYVMTGSWASKALKEAKLI-----------GDTHVAASSEASNYMT------LPKLQEIQL---QDNAAY--LHL--  147 (361)
T ss_dssp             CEEEEEECSHHHHHHHHHHHHH-----------SCEEEEEECGGGTTCS------CCCGGGCCC---CTTEEE--EEE--
T ss_pred             CceEEEeechhhhhhhhhhhhc-----------Cceeeeeccccccccc------hhhhhhhcc---cCcceE--EEE--
Confidence            6666666555443322222111           1111111111111111      123333332   233333  322  


Q ss_pred             CCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHh
Q 011777          262 GVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANV  341 (477)
Q Consensus       262 ~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~  341 (477)
                       ++|...+    ++++.++|+++|+++++|.|++ +|.   ..  ++...+..|+.+.+|.++.+-..++++..+.+.+.
T Consensus       148 -~tg~~~~----~~~i~~~~~~~~al~~vDavss-~g~---~~--id~~~~di~~~s~~k~~~~~~~~~~~~~~~~~~~~  216 (361)
T d2c0ra1         148 -TSNETIE----GAQFKAFPDTGSVPLIGDMSSD-ILS---RP--FDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAES  216 (361)
T ss_dssp             -ESEETTT----TEECSSCCCCTTSCEEEECTTT-TTS---SC--CCGGGCSEEEEETTTTTCCSSCEEEEEEGGGSSSC
T ss_pred             -eccccee----cceEEEeeccCCceEEEEeecc-ccc---cc--cccccceeEEEecccccccccCcEEEEEhHHhhhC
Confidence             2343444    4456789999999999999997 432   22  34445566888888998853233444444433221


Q ss_pred             hccc-----------ccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCC-C---ceeeeccce
Q 011777          342 MAQK-----------IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHD-I---IGDVRGRGL  406 (477)
Q Consensus       342 ~~~~-----------~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~-~---~~~v~g~g~  406 (477)
                      -...           ........++........++.............+..++.+..+........ .   ......+..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~  296 (361)
T d2c0ra1         217 PKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSD  296 (361)
T ss_dssp             CTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCS
T ss_pred             ccccccccccccccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccc
Confidence            1111           011122233333333333333322222222222222222233333222221 1   111111121


Q ss_pred             -eEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHh
Q 011777          407 -MVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMS  475 (477)
Q Consensus       407 -~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~  475 (477)
                       ...+.+        |+.....++.+.|.++||.+..|-..-+.|||+....+|.|||+++++.|++..+
T Consensus       297 ~~~~~~~--------~~~~~~~~~~~~L~~~GI~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~l~~~~~  358 (361)
T d2c0ra1         297 MNITFRL--------ASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKR  358 (361)
T ss_dssp             SEEEEEC--------SCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEC--------CCcccHHHHHHHHHHCCCEEecCCCcCCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence             223332        4455667899999999999887621112399999999999999999999998765

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.49  E-value=1.6e-12  Score=127.77  Aligned_cols=315  Identities=16%  Similarity=0.142  Sum_probs=183.9

Q ss_pred             CHHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccC
Q 011777          114 HPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHG  193 (477)
Q Consensus       114 ~p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG  193 (477)
                      ..+-.+++.+.++.......  .-+...+++++++++++.  +.+++++|||.|+.+|++.. ...++++||+..-+|..
T Consensus        12 ~~~~~~~~~~~l~~g~~~~~--~g~~v~~fE~~~a~~~g~--~~~v~~~SGt~Al~lal~~l-~~~~gdeVi~p~~t~~a   86 (384)
T d1b9ha_          12 DDAERNGLVRALEQGQWWRM--GGDEVNSFEREFAAHHGA--AHALAVTNGTHALELALQVM-GVGPGTEVIVPAFTFIS   86 (384)
T ss_dssp             CHHHHHHHHHHHHTSCCBTT--TCSHHHHHHHHHHHHTTC--SEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCTH
T ss_pred             CHHHHHHHHHHHHcCCeeec--CCHHHHHHHHHHHHHHCc--CeEEEeCCHHHHHHHHHHHc-CCCCCCEEEEecccccc
Confidence            35667888888887532111  236788999999999955  68999999999999999854 34566789888777765


Q ss_pred             CcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchh
Q 011777          194 GSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGY  273 (477)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~  273 (477)
                      .....+..+..+.           .+.. ++.  .+..|    .+++++.+.    .++++|++....|.   ...    
T Consensus        87 ~~~ai~~~g~~p~-----------~~d~-~~~--~~~~d----~~~~~~~i~----~~tk~i~~~~~~g~---~~d----  137 (384)
T d1b9ha_          87 SSQAAQRLGAVTV-----------PVDV-DAA--TYNLD----PEAVAAAVT----PRTKVIMPVHMAGL---MAD----  137 (384)
T ss_dssp             HHHHHHHTTCEEE-----------EECB-CTT--TCCBC----HHHHHHHCC----TTEEEECCBCGGGC---CCC----
T ss_pred             ccccccccccccc-----------cccc-ccc--ccccc----hhhhccccc----cccccccccccccc---ccc----
Confidence            5444444332211           1111 111  11112    367777665    57888887666553   223    


Q ss_pred             HHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeee----cccccCccceEEEEeC-HHHHHhhcccc--
Q 011777          274 LKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTM----AKGIGNGLPLGAVVTT-PEIANVMAQKI--  346 (477)
Q Consensus       274 l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~----sK~lg~G~pig~v~~~-~~~~~~~~~~~--  346 (477)
                      +.++.++|+++|+++|.|.+|+ +|-   .+.+ ...|..-|+.++    +|.++.|- -|+++++ +++.+.++...  
T Consensus       138 ~~~i~~~~~~~~i~lieD~a~a-~ga---~~~g-~~~g~~g~~~~~Sf~~~K~i~~g~-GG~i~t~~~~~~~~~~~~~~~  211 (384)
T d1b9ha_         138 MDALAKISADTGVPLLQDAAHA-HGA---RWQG-KRVGELDSIATFSFQNGKLMTAGE-GGAVVFPDGETEKYETAFLRH  211 (384)
T ss_dssp             HHHHHHHHHHHTCCBCEECTTC-TTC---EETT-EEGGGSSSCEEEECCTTSSSCSSS-CEEEEECTTCHHHHHHHHHHT
T ss_pred             cccchhhhhhhhhhhhhhhcee-ccc---ccCC-EecCcccccceecccccccccccc-cchhhhhhHHHHHHHHHHHhc
Confidence            8999999999999999999997 321   1111 122333455543    49887432 2777765 55555443210  


Q ss_pred             ---------------cccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeee---ccceeE
Q 011777          347 ---------------QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVR---GRGLMV  408 (477)
Q Consensus       347 ---------------~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~---g~g~~~  408 (477)
                                     .+..+.-+.+.++.+++.|+.+  ++..++-+++.+++.+.|.++..-.+......   ....+.
T Consensus       212 g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~l--d~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~  289 (384)
T d1b9ha_         212 SCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARL--DEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMA  289 (384)
T ss_dssp             BTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEE
T ss_pred             CCCCccccccccccccccccccccchhhhhhhhhhhc--ccchhhhhhhhhhhhhhhhcccccccccccccccccccccc
Confidence                           1123334677777777777654  34455555666666666654311000011111   111122


Q ss_pred             EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCC-------------------------------CCCEEEEeCCCC
Q 011777          409 GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGL-------------------------------HGNVFRIKPPMC  457 (477)
Q Consensus       409 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------------------~~~~iRi~p~~~  457 (477)
                      .+.+ ..     .....-+++.+.|.++||-+.....                               ..+.+.+=....
T Consensus       290 ~~~~-~~-----~~~~~Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~  363 (384)
T d1b9ha_         290 MFRI-PG-----LTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVL  363 (384)
T ss_dssp             EEEC-TT-----CCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGG
T ss_pred             ccee-cc-----cccccHHHHHHHHHHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCC
Confidence            2222 11     1223346799999999997653210                               013455522233


Q ss_pred             Cc-HHHHHHHHHHHHHHHhh
Q 011777          458 FT-KDDADFLVDALDYSMSK  476 (477)
Q Consensus       458 ~t-~e~i~~~l~~l~~~l~~  476 (477)
                      .| ++|++..++.|.+++.+
T Consensus       364 Lt~e~ei~~I~~~i~~~l~~  383 (384)
T d1b9ha_         364 LAGEPELHATAEIIADAVAR  383 (384)
T ss_dssp             GSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhh
Confidence            45 67999999999999875

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=1.4e-11  Score=119.32  Aligned_cols=237  Identities=18%  Similarity=0.136  Sum_probs=148.4

Q ss_pred             ccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCC
Q 011777          132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI  211 (477)
Q Consensus       132 ~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  211 (477)
                      +++..+|....|+++|+++-+.  +..+.++||..|+..++....  ..++.||+.+..|.|..........        
T Consensus        44 Y~R~~nPt~~~le~~la~LEgg--~~a~~~sSGMaAi~~~l~~l~--~~gd~vv~~~~~yg~t~~~~~~~~~--------  111 (384)
T d1cs1a_          44 YSRRGNPTRDVVQRALAELEGG--AGAVLTNTGMSAIHLVTTVFL--KPGDLLVAPHDCYGGSYRLFDSLAK--------  111 (384)
T ss_dssp             BTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC--CTTCEEEEETTCCHHHHHHHHHHHT--------
T ss_pred             ccCCCCHHHHHHHHHHHHHhCC--CceEEecChHHHHHHHHhhcc--cccceecccccccchhhhhhhhhhc--------
Confidence            4466789999999999999854  678899999999998887543  3667888887777664332222111        


Q ss_pred             CCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEc
Q 011777          212 PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIAD  291 (477)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~D  291 (477)
                       ..++....+ +    +.  |    .+.+++.+.    +++++|++|++.|+...++.    +++|.++|+++|+++|+|
T Consensus       112 -~~g~~~~~~-d----~~--d----~~~~~~~~~----~~t~~v~~EspsNP~l~v~D----i~~i~~ia~~~g~~~vVD  171 (384)
T d1cs1a_         112 -RGCYRVLFV-D----QG--D----EQALRAALA----EKPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVD  171 (384)
T ss_dssp             -TTSCEEEEE-C----TT--C----HHHHHHHHH----TCCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEE
T ss_pred             -ccccccccc-c----CC--C----HHHHHhhcc----ccccEEEEeccccccceecc----HHHHhhhhhhcCcEEEEe
Confidence             112221111 0    00  1    367777776    57889999998888876666    999999999999999999


Q ss_pred             CcccCccCCCCCCccccccCCCccee--eecccccC-c-cceEEEEeC-HHHHHhhcccccccCCCCcHHHHHHHHHHHH
Q 011777          292 EVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-G-LPLGAVVTT-PEIANVMAQKIQFNTFGGNPVCSAGGLAVLR  366 (477)
Q Consensus       292 Ev~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~  366 (477)
                      .....       ++.+.-...-.|++  +.+|-++| | .-.|+++++ +++.+.+...........+|..+...+..|+
T Consensus       172 NT~at-------P~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~  244 (384)
T d1cs1a_         172 NTFLS-------PALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR  244 (384)
T ss_dssp             CTTTC-------TTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHT
T ss_pred             ccccC-------cccccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccc
Confidence            98741       22222222335666  57899997 4 666778775 4555544432211222345666666655555


Q ss_pred             hhchhhHHHHHHHHHHHHHHHHHHHHHhCCCcee------------------eeccceeEEEEEe
Q 011777          367 VIDKERRQAHCADVGSHLLGRLRTLQERHDIIGD------------------VRGRGLMVGMELV  413 (477)
Q Consensus       367 ~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------v~g~g~~~~i~~~  413 (477)
                      .+.  -..++..++...+.+.|+    .+|.+..                  ..|.|.++.+++.
T Consensus       245 TL~--lRm~~~~~nA~~lA~~L~----~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~  303 (384)
T d1cs1a_         245 TLV--PRMELAQRNAQAIVKYLQ----TQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD  303 (384)
T ss_dssp             THH--HHHHHHHHHHHHHHHHHT----TCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES
T ss_pred             hhH--HHHHHHHHHHHHHHHhcc----cCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeec
Confidence            432  123444445555555443    3444322                  2345778888774

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=6.5e-12  Score=122.31  Aligned_cols=294  Identities=13%  Similarity=0.094  Sum_probs=173.0

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +.+++..+|....|+++|+++-+.  +.++.++||..|+.+++....  ..++.||+....|-|.........       
T Consensus        50 ~~Y~R~~nPt~~~le~~la~LEg~--~~a~~~~SGMaAi~~~l~~l~--~~Gd~iv~~~~~Yg~T~~l~~~~l-------  118 (391)
T d1cl1a_          50 LFYGRRGTLTHFSLQQAMCELEGG--AGCVLFPCGAAAVANSILAFI--EQGDHVLMTNTAYEPSQDFCSKIL-------  118 (391)
T ss_dssp             CCCTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC--CTTCEEEEETTSCHHHHHHHHHTG-------
T ss_pred             eEeECCCChhHHHHHHHHHHHhCC--ccEEEeccccceeeehhhccc--CCCCeEEEecccccchhhhhhhcc-------
Confidence            345567789999999999998754  678899999999998876553  356778888777755432221111       


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHh--CcE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKA--GGV  287 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~--gil  287 (477)
                        +..|+.......     .  |    .++++++++    +++++|++|.+.|+...+..    ++++.++|+++  |++
T Consensus       119 --~~~Gi~~~~~d~-----~--d----~~~~~~~i~----~~t~~i~~EtpsNP~l~v~D----i~~i~~~a~~~~~g~~  177 (391)
T d1cl1a_         119 --SKLGVTTSWFDP-----L--I----GADIVKHLQ----PNTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAI  177 (391)
T ss_dssp             --GGGTCEEEEECT-----T--C----GGGGGGTCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCE
T ss_pred             --cccccccccccC-----c--c----ccccccccc----cccceeeecccCcccccccc----cHHHHHHHHhccCCcE
Confidence              111332221110     0  1    245555443    67899999998888766665    89999999775  999


Q ss_pred             EEEcCcccCccCCCCCCccccccCCCccee--eecccccC-c-cceEEEEeCHHHHHhhcccccccCCCCcHHHHHHHHH
Q 011777          288 CIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-G-LPLGAVVTTPEIANVMAQKIQFNTFGGNPVCSAGGLA  363 (477)
Q Consensus       288 lI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a  363 (477)
                      +|+|.....       ++.++-...-.|++  +.+|-++| | .-.|.++.+++..+.+........-..+|..+...+.
T Consensus       178 ~vVDnT~at-------P~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G~~~~p~~a~ll~r  250 (391)
T d1cl1a_         178 IMIDNTWAA-------GVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSR  250 (391)
T ss_dssp             EEEECTTTT-------TTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             EEEeccccc-------hhhhcccccccceEEeecchhccccccccccceeccccccccchhhhhcccccCCchhhhhhhc
Confidence            999998752       22222223334666  57799997 4 5668888888876665433211112234666555555


Q ss_pred             HHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee------------------eccceeEEEEEeeCCCCCCccHHH
Q 011777          364 VLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV------------------RGRGLMVGMELVTDRKEKTPAKAE  425 (477)
Q Consensus       364 ~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v------------------~g~g~~~~i~~~~~~~~~~~~~~~  425 (477)
                      .|+.+.  -..++..++...+.+.|+    ++|.+..|                  .|.|.++.+.+....     ..+.
T Consensus       251 gl~TL~--lR~~~~~~nA~~vA~~L~----~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~-----~~e~  319 (391)
T d1cl1a_         251 GLRTLG--VRLRQHHESSLKVAEWLA----EHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKL-----NNEE  319 (391)
T ss_dssp             HHTTHH--HHHHHHHHHHHHHHHHHH----TCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCC-----CHHH
T ss_pred             cchhHH--HHHHHHHHHHHHHHHHHH----hcccccccccccccchhhHHHHhhccCCCCcceeeeecCCC-----CHHH
Confidence            554332  223444445555554443    45544333                  344556677774321     1222


Q ss_pred             HHHHHHHHH--HcCceee--------cc-------------CCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhhC
Q 011777          426 TAVLFEKLR--ELGVLVG--------KG-------------GLHGNVFRIKPPMCFTKDDADFLVDALDYSMSKL  477 (477)
Q Consensus       426 ~~~~~~~l~--~~Gv~v~--------~~-------------~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~l  477 (477)
                      ..++.+.|.  ..++-.+        +.             +..++.||++..+    |+++.+++-|+++|+++
T Consensus       320 ~~~f~d~L~l~~~a~SlG~~~SLi~~~~~~~~~~~~~~~~~gi~~~liRlSVGl----Ed~eDLi~Dl~~AL~~i  390 (391)
T d1cl1a_         320 LANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGL----EDVDDLIADLDAGFARI  390 (391)
T ss_dssp             HHHHHTTCSSCBCCSCCCSSSCEEEEECHHHHHHTSTTCCCCCCSCEEEEECCS----SCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCcceEeeCCCCCccceeCCcccccccCCchHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHHhh
Confidence            334444332  1122111        00             1234679998765    56677777777777653

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.41  E-value=3.1e-11  Score=117.91  Aligned_cols=315  Identities=17%  Similarity=0.099  Sum_probs=178.1

Q ss_pred             HHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCccc
Q 011777          118 LNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSG  197 (477)
Q Consensus       118 ~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~  197 (477)
                      ++++.+.++....+.   .-+...+|++.+++.++.  +.+++++|||.|+.+|++.. ...++++||+..-+|......
T Consensus         4 ~~~~~~~l~~~~~~~---~G~~~~~fE~~~~~~~~~--~~~~~~~SgT~Al~lal~~l-~~~~gdeVi~p~~t~~a~~~~   77 (374)
T d1o69a_           4 LKYIEEVFKSNYIAP---LGEFVNRFEQSVKDYSKS--ENALALNSATAALHLALRVA-GVKQDDIVLASSFTFIASVAP   77 (374)
T ss_dssp             HHHHHHHHHHTTTSC---TTHHHHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCGGGTHH
T ss_pred             HHHHHHHHhcCCcCC---CCHHHHHHHHHHHHHHCc--CeEEEeCCHHHHHHHHHHHc-CCCCcCEEEeCCcchHhhHHH
Confidence            567778777653321   126678999999999854  68999999999999999865 345567898877777555444


Q ss_pred             ccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHH
Q 011777          198 TIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLV  277 (477)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l  277 (477)
                      ....+..+           ..+.....   ....     ..+.++..... ..++.+|++-...|.   ...    +.++
T Consensus        78 ~~~~g~~p-----------v~~Di~~~---~~~~-----~~~~~~~~~~~-~~~~~aii~~~~~G~---~~d----~~~i  130 (374)
T d1o69a_          78 ICYLKAKP-----------VFIDCDET---YNID-----VDLLKLAIKEC-EKKPKALILTHLYGN---AAK----MDEI  130 (374)
T ss_dssp             HHHTTCEE-----------EEECBCTT---SSBC-----HHHHHHHHHHC-SSCCCEEEEECGGGC---CCC----HHHH
T ss_pred             Hhhcccee-----------Eecccccc---cccc-----cccccccchhc-ccccccccccccccc---hhh----hHHH
Confidence            43332211           11111100   0000     12222222212 235666666554443   233    8999


Q ss_pred             HHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec----ccccCccceEEEEe-CHHHHHhhcccc------
Q 011777          278 YDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA----KGIGNGLPLGAVVT-TPEIANVMAQKI------  346 (477)
Q Consensus       278 ~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pig~v~~-~~~~~~~~~~~~------  346 (477)
                      .++|+++|+.||.|.+|+ ||-   .+.+ ...|-.-|+.+||    |.++.|=. |++++ ++++++.+....      
T Consensus       131 ~~~~~~~~i~vIED~a~a-~g~---~~~~-~~~G~~gd~~~fSf~~~K~l~tgeG-G~i~tnn~~~~~~~~~~~~~g~~~  204 (374)
T d1o69a_         131 VEICKENDIVLIEDAAEA-LGS---FYKN-KALGTFGEFGVYSYNGNKIITTSGG-GMLIGKNKEKIEKARFYSTQAREN  204 (374)
T ss_dssp             HHHHHHTTCEEEEECTTC-TTC---EETT-EETTSSSSEEEEECCTTSSSCCSSC-EEEEESCHHHHHHHHHHTBTCCCS
T ss_pred             HHHhhccCcchhhhhhhh-hcc---eECC-eecCCCCceEEEeccCccccccccc-eeehhhhHHHHHhhcccccccccc
Confidence            999999999999999998 431   1111 2234445877765    88874211 66666 466776654221      


Q ss_pred             --------cccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCC-
Q 011777          347 --------QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRK-  417 (477)
Q Consensus       347 --------~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~-  417 (477)
                              .+..+..+.+.++.+++.|+.+  ++..++-++..+++.+.|.+.....+..........+..+.+..+.. 
T Consensus       205 ~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l--~~~i~~r~~i~~~y~~~L~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  282 (374)
T d1o69a_         205 CLHYEHLDYGYNYRLSNVLGAIGVAQMEVL--EQRVLKKREIYEWYKEFLGEYFSFLDELENSRSNRWLSTALINFDKNE  282 (374)
T ss_dssp             SSSCCCSSCCCBCBCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTTEECCCCCTTEECCCSSEEEEESCCGGG
T ss_pred             ccccccccCCccccccchhhhhhHHHHhhh--hhhcchhHHHHHHHHhhccccccccccccCCCCChhheeeeecccccc
Confidence                    1223345678888887777655  34455555566666666654321111111111111111111111100 


Q ss_pred             ------------CCCccHHHHHHHHHHHHHcCceeeccCC---------------C-------CCEEEEeCCC--CCcHH
Q 011777          418 ------------EKTPAKAETAVLFEKLRELGVLVGKGGL---------------H-------GNVFRIKPPM--CFTKD  461 (477)
Q Consensus       418 ------------~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------~-------~~~iRi~p~~--~~t~e  461 (477)
                                  ...........+.+.|.++||-+++.-.               .       .+.|.+  |.  ..|++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~~~i~L--P~~~~lt~~  360 (374)
T d1o69a_         283 LNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICL--PSGTAMSKD  360 (374)
T ss_dssp             SCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEE--CCCTTCCHH
T ss_pred             ccccccccccchhhccchhhHHHHHHHHHHCCCCEEEeCcchhhChhhhcCCCCCCHHHHHHHhCEEEC--cCCCCCCHH
Confidence                        0011223456789999999997754210               0       123444  44  35999


Q ss_pred             HHHHHHHHHHHHHh
Q 011777          462 DADFLVDALDYSMS  475 (477)
Q Consensus       462 ~i~~~l~~l~~~l~  475 (477)
                      |+++.++.|.++++
T Consensus       361 di~~I~~~I~~~lk  374 (374)
T d1o69a_         361 DVYEISKLILKSIK  374 (374)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHC
Confidence            99999999998874

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.40  E-value=1.9e-12  Score=125.87  Aligned_cols=318  Identities=9%  Similarity=-0.071  Sum_probs=167.9

Q ss_pred             CCHHHHHHHHHHHhhcc----------ccccccCChHHHHHHHHHHhhCCCCCC-EEEEeCChHHHHHHHHHHHHhccCC
Q 011777          113 CHPDVLNAIFEQSKLLQ----------HATTIYLHHAIADFAEALASKMPGNLK-VVYFVNSGTEANELAMLMARLSTGN  181 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~----------~~~~~~~~~~~~~l~~~La~~~~~~~~-~v~~~~sGseA~~~Al~~ar~~~~~  181 (477)
                      .+++|+++|.+++....          |.+. .......+.+++|+++++.+.+ .|+|++|+++++..+..... ..++
T Consensus        14 ~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~-~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~~-~~~~   91 (360)
T d1w23a_          14 LPKPALERAQKELLNFNDTQMSVMELSHRSQ-SYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNL-LTKG   91 (360)
T ss_dssp             CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSH-HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH-CCTT
T ss_pred             CCHHHHHHHHHHHHhhcccCccccccCcCCH-HHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhhh-cccC
Confidence            48999999999775421          1110 1123567888999999876444 68888888887776665443 3456


Q ss_pred             ceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccC
Q 011777          182 LGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQ  261 (477)
Q Consensus       182 ~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~  261 (477)
                      +.+++...+.++..........           +...+...........      .++++..+     .....+.++.+.
T Consensus        92 ~~v~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~------~~~~~~~~-----~~~~~~~~~~~t  149 (360)
T d1w23a_          92 TIGNYVLTGSWSEKALKEAKLL-----------GETHIAASTKANSYQS------IPDFSEFQ-----LNENDAYLHITS  149 (360)
T ss_dssp             CEEEEEECSHHHHHHHHHHHTT-----------SEEEEEEECGGGTSCS------CCCGGGCC-----CCTTEEEEEEES
T ss_pred             cccceeeccchhhhhHHHHHHh-----------hhcceeeccccccccc------hhhhhhcc-----cccccceeEecC
Confidence            6777766666654333222211           1111100000000000      11222211     233455555544


Q ss_pred             CCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHh
Q 011777          262 GVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANV  341 (477)
Q Consensus       262 ~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~  341 (477)
                         |.+.+    +++|.++|+++|+++|+|.+|+ +|-   ..  ++...+..|+.+++|.++.+-+.+.++.++...+.
T Consensus       150 ---g~~~~----~~~i~~~~~~~g~l~ivDavqs-~g~---~~--id~~~~~vd~~~~~~~k~~~~~~~~~~~~~~~~~~  216 (360)
T d1w23a_         150 ---NNTIY----GTQYQNFPEINHAPLIADMSSD-ILS---RP--LKVNQFGMIYAGAQKNLGPSGVTVVIVKKDLLNTK  216 (360)
T ss_dssp             ---EETTT----TEECSSCCCCCSSCEEEECTTT-TTS---SC--CCGGGCSEEEEETTTTTSCTTCEEEEEEHHHHCSC
T ss_pred             ---Ccccc----ceeeeeccccceeeEEeecccc-ccc---cc--cccccccceEEeeccccccCCcceeeEechhhhcc
Confidence               44555    5677899999999999999998 432   22  33344556889999888765455555555443322


Q ss_pred             hccc-----------ccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCc------eeeecc
Q 011777          342 MAQK-----------IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDII------GDVRGR  404 (477)
Q Consensus       342 ~~~~-----------~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~------~~v~g~  404 (477)
                      ....           ..............+....+....+........+..+.....+..........      ...|..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~  296 (360)
T d1w23a_         217 VEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSL  296 (360)
T ss_dssp             CTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCS
T ss_pred             cccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCChhhcce
Confidence            1111           01111122222222222222222222222222222222222222222222111      112222


Q ss_pred             ceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          405 GLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       405 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      + .+.+.+        ++......+...|.++||.+..|-..-+.+|++.-..+|.||++++++.|++..+.
T Consensus       297 ~-vvsf~i--------~~~~~~~~~~~~l~~~GI~~~~G~~~~ggiRiS~~~~~t~e~V~~Li~~~~~~~~~  359 (360)
T d1w23a_         297 M-NVTFNL--------RNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             S-EEEEEC--------SSHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             e-EEEEEc--------CCCccHHHHHHHHHHCCCeeeeCCCccCcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence            2 233333        34445667888999999998765211134899876677999999999999988764

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=2.4e-12  Score=124.77  Aligned_cols=321  Identities=12%  Similarity=-0.050  Sum_probs=163.5

Q ss_pred             CCHHHHHHHHHHHhhccccc-c------c--cCChHHHHHHHHHHhhCCCCC-CEEEEeCChHHHHHHHHHHHHhccCCc
Q 011777          113 CHPDVLNAIFEQSKLLQHAT-T------I--YLHHAIADFAEALASKMPGNL-KVVYFVNSGTEANELAMLMARLSTGNL  182 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~~~~~~-~------~--~~~~~~~~l~~~La~~~~~~~-~~v~~~~sGseA~~~Al~~ar~~~~~~  182 (477)
                      .+|+|++||.+++.+..... +      +  -..+...+.++.|+++++... ..|+|++|++++++.++.... ..+++
T Consensus        12 ~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~-~~~~~   90 (360)
T d1bjna_          12 LPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNI-LGDKT   90 (360)
T ss_dssp             CCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH-CTTCC
T ss_pred             CCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhcc-ccccc
Confidence            48999999999875431100 0      0  012346788899999987643 378888888887776664333 34556


Q ss_pred             eEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCC
Q 011777          183 GMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQG  262 (477)
Q Consensus       183 ~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~  262 (477)
                      .+++..+++.+.....+....           +...+...........      .+++++.+.  ...+..+|...  .+
T Consensus        91 ~v~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~------~~~~~~~~~--~~~~~v~v~~~--~~  149 (360)
T d1bjna_          91 TADYVDAGYWAASAIKEAKKY-----------CTPNVFDAKVTVDGLR------AVKPMREWQ--LSDNAAYMHYC--PN  149 (360)
T ss_dssp             EEEEEESSHHHHHHHHHHTTT-----------SEEEEEECEEEETTEE------EECCGGGCC--CCSSCSCEEEC--SE
T ss_pred             ccceecccchhhhhHHHHhhc-----------CccceeeccccCCCcc------hhhhhhhhc--cCCceeEEEec--cc
Confidence            666665555443222221111           1111111111100000      012222222  12233333332  23


Q ss_pred             CCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeecccccCccceEEEEeCHHHHHhh
Q 011777          263 VGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMAKGIGNGLPLGAVVTTPEIANVM  342 (477)
Q Consensus       263 ~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pig~v~~~~~~~~~~  342 (477)
                      .+|...+.+.    +  .++.+++++++|-+++ ++.     ..++..++..|+.+.+|.++++.+.+.++.++...+..
T Consensus       150 ~t~~~~~~~~----i--~~~~~~~~v~vDa~~~-~~~-----~~vd~~~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~  217 (360)
T d1bjna_         150 ETIDGIAIDE----T--PDFGADVVVAADFSST-ILS-----RPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKAN  217 (360)
T ss_dssp             ETTTTEECCC----C--CCCCTTCCEEEECTTT-TTS-----SCCCGGGCSEEEEETTTTTSSTTCEEEEEEGGGCSCCC
T ss_pred             ccccCccccc----e--ecccccceeeeeeecc-ccc-----eeeeeccceeEEEEcccccccCCCceeEeeehhhhhcc
Confidence            3444444322    2  4678899999998876 321     22455566677788889999776667776665533222


Q ss_pred             ccc-----------ccccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCce-----eeeccce
Q 011777          343 AQK-----------IQFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIG-----DVRGRGL  406 (477)
Q Consensus       343 ~~~-----------~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~-----~v~g~g~  406 (477)
                      ...           .........+.....+.........+...+...+........+.+.........     ..+..+ 
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~-  296 (360)
T d1bjna_         218 IACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRM-  296 (360)
T ss_dssp             TTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSS-
T ss_pred             ccCCcchhhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccce-
Confidence            111           011122223333333332222222222222222222222222222222222111     112222 


Q ss_pred             eEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccCCCCCEEEEeCCCCCcHHHHHHHHHHHHHHHhh
Q 011777          407 MVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGGLHGNVFRIKPPMCFTKDDADFLVDALDYSMSK  476 (477)
Q Consensus       407 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l~~  476 (477)
                      .+.+.+        |+......+...|.++||.+..|-..-+.+|++....+|+|||+++++.|++..++
T Consensus       297 v~~f~~--------~~~~~~~~~~~~l~~~Gi~~~~G~~~~g~~Ris~~~~~t~edV~~li~~l~e~~~~  358 (360)
T d1bjna_         297 NVPFQL--------ADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERR  358 (360)
T ss_dssp             EEEEEE--------SSGGGHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEc--------CCcccHHHHHHHHHHCCCEeecCCCccCeEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence            334554        23334567888999999988775211124899998889999999999999997653

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.38  E-value=1.6e-11  Score=119.89  Aligned_cols=308  Identities=14%  Similarity=0.057  Sum_probs=178.7

Q ss_pred             HHHHHHHHHHHhhccccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccC-CceEEEEccCccC
Q 011777          115 PDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTG-NLGMIALRNAYHG  193 (477)
Q Consensus       115 p~v~~Av~~~l~~~~~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~-~~~ii~~~~~yhG  193 (477)
                      ++-.+++.+.++...++    .-+...+++++|+++++.  +.+++++|||.|+.+|++......+ ++.||+..-+|..
T Consensus        12 ~~~~~~v~~~l~~~~~~----~G~~v~~fE~~~~~~~g~--k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a   85 (371)
T d2fnua1          12 KEDKKAVLEVLNSKQLT----QGKRSLLFEEALCEFLGV--KHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVA   85 (371)
T ss_dssp             HHHHHHHHHHHTSSCCS----SSHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTH
T ss_pred             HHHHHHHHHHHcCCCcc----CCHHHHHHHHHHHHHHCc--CeEEEEecHHHHHHHHHHHhcccCCCCCeeecccccccc
Confidence            56677888888764432    236688999999999954  6899999999999999996544333 3468886655554


Q ss_pred             CcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchh
Q 011777          194 GSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGY  273 (477)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~  273 (477)
                      .....+..+.             ..+....... .+.+     .+++++.+.    .++.+|++-...|.   ...    
T Consensus        86 ~~~ai~~~G~-------------~pv~vDi~~~-~~~~-----~~~~~~~~~----~~t~avi~vh~~G~---~~~----  135 (371)
T d2fnua1          86 TANMLLESGY-------------TPVFAGIKND-GNID-----ELALEKLIN----ERTKAIVSVDYAGK---SVE----  135 (371)
T ss_dssp             HHHHHHHTTC-------------EEEECCBCTT-SSBC-----GGGSGGGCC----TTEEEEEEECGGGC---CCC----
T ss_pred             cceeeeccCc-------------cccccccccc-cccc-----chhhhhhcc----chhhcccccccccc---ccc----
Confidence            4333333322             2222111111 1111     133444433    57777776665543   333    


Q ss_pred             HHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeeec----ccccCccceEEEEeC-HHHHHhhcccc--
Q 011777          274 LKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTMA----KGIGNGLPLGAVVTT-PEIANVMAQKI--  346 (477)
Q Consensus       274 l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pig~v~~~-~~~~~~~~~~~--  346 (477)
                      ++++.++|+++|+.+|.|.+|+ +|-    .+.-...|-.-|+.++|    |.++.|- -|+++++ +++.+.+....  
T Consensus       136 ~~~i~~~~~~~~i~lIEDaaqa-~Ga----~~~~~~~G~~g~~~~~Sf~~~K~l~~g~-GG~i~t~~~~~~~~~~~~~~~  209 (371)
T d2fnua1         136 VESVQKLCKKHSLSFLSDSSHA-LGS----EYQNKKVGGFALASVFSFHAIKPITTAE-GGAVVTNDSELHEKMKLFRSH  209 (371)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTC-TTC----EETTEETTSSSSEEEEECCTTSSSCCSS-CEEEEESCHHHHHHHHHHTBT
T ss_pred             cccccccccccchhhccchhhc-cCc----eeccccCCcccccccccccccccccccc-ceEEEeechhhhhhccccccc
Confidence            7899999999999999999998 431    11113345555666655    8887532 2777775 56666654321  


Q ss_pred             --------------cccCCCCcHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhCCCceee------eccce
Q 011777          347 --------------QFNTFGGNPVCSAGGLAVLRVIDKERRQAHCADVGSHLLGRLRTLQERHDIIGDV------RGRGL  406 (477)
Q Consensus       347 --------------~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v------~g~g~  406 (477)
                                    .+..+..+.+.++.++..|+.+  ++..++-+++.+++.+.|.+    .+.+...      .....
T Consensus       210 g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l--~~~~~~R~~~~~~y~~~l~~----~~~~~~~~~~~~~~~~~~  283 (371)
T d2fnua1         210 GMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKD----NPYFTPLHPLLKDKSSNH  283 (371)
T ss_dssp             TEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTT----CSSEEESGGGCSSCCCCS
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhhhc--cchhhhhhhhhhhhcccccc----cccccccccccccccccc
Confidence                          1223344577777777777654  33444444445555444433    3322211      11111


Q ss_pred             eEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-------------CCC----------CEEEEeCCCCCcHHHH
Q 011777          407 MVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-------------LHG----------NVFRIKPPMCFTKDDA  463 (477)
Q Consensus       407 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------------~~~----------~~iRi~p~~~~t~e~i  463 (477)
                      .+.+.+..      .....-+.+.+.|.++||-+.+.-             ..+          +.+.+=.....|++|+
T Consensus       284 ~~~i~~~~------~~~~~r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di  357 (371)
T d2fnua1         284 LYPILMHQ------KFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESV  357 (371)
T ss_dssp             CEEEEECG------GGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHH
T ss_pred             cccccccc------cchhHHHHHHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHH
Confidence            22333321      111123578899999999765320             001          2455522223599999


Q ss_pred             HHHHHHHHHHHhh
Q 011777          464 DFLVDALDYSMSK  476 (477)
Q Consensus       464 ~~~l~~l~~~l~~  476 (477)
                      ++.++.+.+.+++
T Consensus       358 ~~I~~~i~~~~~~  370 (371)
T d2fnua1         358 QNIAHSVLKTFES  370 (371)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999988864

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.34  E-value=1.5e-10  Score=112.74  Aligned_cols=219  Identities=12%  Similarity=-0.021  Sum_probs=136.0

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +.+++..+|....|+++|+++-+.  +..+.++||..|+..++....  .+++.|++.+..|.|..........      
T Consensus        51 ~~YsR~~nPT~~~le~~la~LEg~--~~a~~~sSGmaAi~~~~l~l~--~~gd~vv~~~~~yg~t~~~~~~~~~------  120 (394)
T d1e5ea_          51 YIYTRLGNPTVSNLEGKIAFLEKT--EACVATSSGMGAIAATVLTIL--KAGDHLISDECLYGCTHALFEHALT------  120 (394)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC--CTTCEEEEESCCCHHHHHHHHTHHH------
T ss_pred             ceecCCCCHHHHHHHHHHHHHhCC--cceeeeccchHHHHHHHHhhc--ccccccccccceeehhhHhHHHHhh------
Confidence            445566789999999999998754  678899999999998875443  3567777777666554322221111      


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHH-HhCcEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVR-KAGGVC  288 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~-~~gill  288 (477)
                         ..|+....+..      . |    .++++++++    +++++|++|.+.|+...++.    ++++.++++ ++|+++
T Consensus       121 ---~~gi~~~~~d~------~-d----~~~~~~~i~----~~t~lv~~Etp~NP~l~v~D----i~~~~~~~~~~~g~~v  178 (394)
T d1e5ea_         121 ---KFGIQVDFINT------A-I----PGEVKKHMK----PNTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLV  178 (394)
T ss_dssp             ---HTTCEEEEECT------T-S----TTHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEE
T ss_pred             ---ccceeeeccCC------C-C----HHHHHHhhc----ccccEEEEeccCCcceeeeh----hhhhhhccccccCeEE
Confidence               01222211110      0 1    256777775    67899999998888776666    888887665 578999


Q ss_pred             EEcCcccCccCCCCCCccccccCCCccee--eecccccC-c-cceEEEEeCHHHHHhhcccccccCC--CCcHHHHHHHH
Q 011777          289 IADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-G-LPLGAVVTTPEIANVMAQKIQFNTF--GGNPVCSAGGL  362 (477)
Q Consensus       289 I~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pig~v~~~~~~~~~~~~~~~~~t~--~~~~~~~aaa~  362 (477)
                      |+|...+.       +..++-...-.|++  +.+|-++| + .-.|+++++++.....+.......+  ..+|..+...+
T Consensus       179 vvDnT~at-------P~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~  251 (394)
T d1e5ea_         179 IADNTFCS-------PMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLIT  251 (394)
T ss_dssp             EEECTTTC-------TTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHH
T ss_pred             EecCcccC-------cccCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHH
Confidence            99998652       22223233334666  57799997 5 6678889998877654322111122  23566666666


Q ss_pred             HHHHhhchhhHHHHHHHHHHHHHHHHH
Q 011777          363 AVLRVIDKERRQAHCADVGSHLLGRLR  389 (477)
Q Consensus       363 a~l~~l~~~~~~~~~~~~~~~l~~~L~  389 (477)
                      ..|+.+.  -..++..++...+.+.|+
T Consensus       252 rgl~TL~--lRm~r~~~nA~~lA~~L~  276 (394)
T d1e5ea_         252 RGLSTLN--IRMKAESENAMKVAEYLK  276 (394)
T ss_dssp             HHHTTHH--HHHHHHHHHHHHHHHHHH
T ss_pred             hhchhHH--HHHHHHHHHHHHHHHHHh
Confidence            6665442  234445555555555554

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=1.7e-10  Score=112.01  Aligned_cols=214  Identities=14%  Similarity=0.072  Sum_probs=135.1

Q ss_pred             ccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCC
Q 011777          132 TTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPI  211 (477)
Q Consensus       132 ~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~  211 (477)
                      +++..+|....|+++|+++-+.  +..+.++||..|+..++. +  ...++.||+....|.|.........         
T Consensus        49 YsR~gnPT~~~lE~~la~LE~~--~~a~~~sSGmaAi~~~l~-~--l~~gd~iv~~~~~yg~t~~~~~~~l---------  114 (393)
T d1n8pa_          49 YSRSQNPNRENLERAVAALENA--QYGLAFSSGSATTATILQ-S--LPQGSHAVSIGDVYGGTHRYFTKVA---------  114 (393)
T ss_dssp             BTTTCCHHHHHHHHHHHHHTTC--SEEEEESCHHHHHHHHHH-T--SCSSCEEEEESSCCHHHHHHHHHTS---------
T ss_pred             eeCCCChHHHHHHHHHHHHhCC--ceEEEecCchhHHHhhhh-c--ccCCCeeeeeeeecccchhhhhhhh---------
Confidence            4566789999999999999854  678899999888864432 2  2356788988888876543322221         


Q ss_pred             CCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHH----HhCcE
Q 011777          212 PQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVR----KAGGV  287 (477)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~----~~gil  287 (477)
                      +..++.....         ++.   .++++++++    +++++|++|.+-|+...++.    +++|.++|+    ++|++
T Consensus       115 ~~~gi~~~~~---------~~~---~~~~~~~i~----~~t~lv~~EspsNP~l~v~D----i~~ia~~a~~~~~~~g~~  174 (393)
T d1n8pa_         115 NAHGVETSFT---------NDL---LNDLPQLIK----ENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVI  174 (393)
T ss_dssp             TTTCSCCEEE---------SSH---HHHHHHHSC----SSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCE
T ss_pred             hcccceeEEe---------ecc---hHHHHHHhh----hhcceeEecCcchhhhhccc----hhhhhhhhhhhcccCCce
Confidence            1112221110         011   356777775    68899999998888776666    899999998    77899


Q ss_pred             EEEcCcccCccCCCCCCccccccCCCccee--eecccccC-c-cceEEEEeC-HHHHHhhcccccccCCCCcHHHHHHHH
Q 011777          288 CIADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-G-LPLGAVVTT-PEIANVMAQKIQFNTFGGNPVCSAGGL  362 (477)
Q Consensus       288 lI~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~  362 (477)
                      +|+|.....       +..++-...-.|++  +++|-++| | .-.|+++.+ +++.+.+........-..+|..+...+
T Consensus       175 lvVDnT~at-------P~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~  247 (393)
T d1n8pa_         175 LVVDNTFLS-------PYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTH  247 (393)
T ss_dssp             EEEECTTTH-------HHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred             EEEecCccC-------cccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChHHHHHHH
Confidence            999998652       22222222334666  57799997 5 666877755 556666654322222234577766666


Q ss_pred             HHHHhhchhhHHHHHHHHHHHHHHHH
Q 011777          363 AVLRVIDKERRQAHCADVGSHLLGRL  388 (477)
Q Consensus       363 a~l~~l~~~~~~~~~~~~~~~l~~~L  388 (477)
                      ..|+.+.  -..++..++...+.+.|
T Consensus       248 rgl~Tl~--lR~~~~~~nA~~lA~~L  271 (393)
T d1n8pa_         248 RGLKTLH--LRVRQAALSANKIAEFL  271 (393)
T ss_dssp             HHHTTHH--HHHHHHHHHHHHHHHHH
T ss_pred             hCCcchh--hHHHHHHHHHHHHHHHH
Confidence            6665442  22344444455555555

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.31  E-value=7e-11  Score=112.57  Aligned_cols=208  Identities=12%  Similarity=-0.041  Sum_probs=128.1

Q ss_pred             HHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecC
Q 011777          142 DFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVN  221 (477)
Q Consensus       142 ~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (477)
                      .|+++|+++.+.  +..+.++||..|+..++....  ..+++||+....|+|..........         ..|+.....
T Consensus         2 aLE~~la~Leg~--~~a~~~sSGMaAi~~~l~~ll--~~Gd~iv~~~~~Yg~t~~~~~~~l~---------~~gi~~~~~   68 (331)
T d1pffa_           2 ALEGKIAKLEHA--EACAATASGMGAIAASVWTFL--KAGDHLISDDCLYGCTHALFEHQLR---------KFGVEVDFI   68 (331)
T ss_dssp             HHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC--CTTCEEEEESCCCHHHHHHHHTHHH---------HTTCEEEEE
T ss_pred             HHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHHh--CCCCEEEEeCCCchHHHHHHHHHHH---------hcCeEEEEe
Confidence            577888888744  678889999999988886443  3567899988889775433222110         112222111


Q ss_pred             CCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHH-HHhCcEEEEcCcccCccCC
Q 011777          222 PDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIV-RKAGGVCIADEVQTGFGRT  300 (477)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~-~~~gillI~DEv~~gfgr~  300 (477)
                      ..      . |    .+.++++++    ++++.|++|.+.++...++.    ++.+.+++ +++|+++|+|...+.    
T Consensus        69 d~------~-d----~~~~~~~i~----~~t~~i~~Es~~np~~~v~d----~~~~~~~~a~~~~~~~vVDnT~at----  125 (331)
T d1pffa_          69 DM------A-V----PGNIEKHLK----PNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFAS----  125 (331)
T ss_dssp             CT------T-S----TTHHHHTCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTH----
T ss_pred             cc------c-c----hhhHhhhcc----cccceeeeeccccccccccc----chhhhhhhhcccCceEEeeccccc----
Confidence            10      0 1    256676665    67899999998888766665    78888874 678999999998652    


Q ss_pred             CCCCccccccCCCccee--eecccccC-c-cceEEEEeCHHHHHhhccccccc--CCCCcHHHHHHHHHHHHhhchhhHH
Q 011777          301 GSHYWGFETQGVIPDIV--TMAKGIGN-G-LPLGAVVTTPEIANVMAQKIQFN--TFGGNPVCSAGGLAVLRVIDKERRQ  374 (477)
Q Consensus       301 G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pig~v~~~~~~~~~~~~~~~~~--t~~~~~~~~aaa~a~l~~l~~~~~~  374 (477)
                         ++.++-.....|++  +.+|-++| | .-.|+++++++............  .-..+|..+...+..++.+.  -..
T Consensus       126 ---p~~~~pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~--~Rm  200 (331)
T d1pffa_         126 ---PILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLD--MRV  200 (331)
T ss_dssp             ---HHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHH--HHH
T ss_pred             ---cccccccccCCCEEEecchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHHHH--HHH
Confidence               22233233335766  57799997 4 66688888877655443221111  12345777666666665442  233


Q ss_pred             HHHHHHHHHHHHHHHH
Q 011777          375 AHCADVGSHLLGRLRT  390 (477)
Q Consensus       375 ~~~~~~~~~l~~~L~~  390 (477)
                      ++..++...+.+.|++
T Consensus       201 ~~~~~nA~~lA~~L~~  216 (331)
T d1pffa_         201 KRAAENAQKVAEFLHE  216 (331)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            4445555555555543

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.30  E-value=1.2e-10  Score=113.76  Aligned_cols=170  Identities=17%  Similarity=0.154  Sum_probs=115.5

Q ss_pred             ccccccCChHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCC
Q 011777          130 HATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKY  209 (477)
Q Consensus       130 ~~~~~~~~~~~~~l~~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  209 (477)
                      +.+++..+|....|+++|+++-+.  +..+.++||..|+.+++....  ..+++||+.+..|+|..........      
T Consensus        50 ~~YsR~~nPT~~~LE~~la~LE~~--~~a~~~~SGmaAi~~~~~~l~--~~gd~il~~~~~Yg~t~~l~~~~~~------  119 (421)
T d2ctza1          50 NIYSRIMNPTVDVLEKRLAALEGG--KAALATASGHAAQFLALTTLA--QAGDNIVSTPNLYGGTFNQFKVTLK------  119 (421)
T ss_dssp             GSCBTTBCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC--CTTCEEEECSCCCHHHHHHHHTHHH------
T ss_pred             ceecCCCCHHHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHhhc--ccccceeecCCcCCchhHHHHHHHh------
Confidence            445567789999999999999854  678899999999988886443  3678999999999875443222211      


Q ss_pred             CCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEE
Q 011777          210 PIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCI  289 (477)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI  289 (477)
                         ..++....+..      .+.    .+..+++++    +++++|++|.+.|+...++.    +++|.++|+++|+++|
T Consensus       120 ---~~gi~~~~~d~------~~~----~~~~~~~~~----~~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~v  178 (421)
T d2ctza1         120 ---RLGIEVRFTSR------EER----PEEFLALTD----EKTRAWWVESIGNPALNIPD----LEALAQAAREKGVALI  178 (421)
T ss_dssp             ---HTTCEEEECCT------TCC----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEE
T ss_pred             ---hccccceeccc------ccC----cchhccccC----CCceEEEEcCCCcceeEecc----hHHHHHHHHhcCCceE
Confidence               11333221111      000    134444444    68999999999888877776    9999999999999999


Q ss_pred             EcCcccCccCCCCCCccccccCCCccee--eecccccC-c-cceEEEEeCH
Q 011777          290 ADEVQTGFGRTGSHYWGFETQGVIPDIV--TMAKGIGN-G-LPLGAVVTTP  336 (477)
Q Consensus       290 ~DEv~~gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pig~v~~~~  336 (477)
                      +|...+.   +   ++.+.-...-.|++  +.+|-++| | .-.|+++.++
T Consensus       179 vDnT~a~---t---P~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~  223 (421)
T d2ctza1         179 VDNTFGM---G---GYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGG  223 (421)
T ss_dssp             EECGGGG---G---GTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECS
T ss_pred             ecccccc---c---ceeccccccCCcEEEEechhhccCCCCeEEEEEEcCC
Confidence            9998641   1   11122223335666  57799997 5 5667777654

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.08  E-value=7.7e-09  Score=99.01  Aligned_cols=322  Identities=12%  Similarity=0.092  Sum_probs=181.6

Q ss_pred             CCHHHHHHHHHHHhh-cc--ccccccC--C---hHHHHHH-HHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCce
Q 011777          113 CHPDVLNAIFEQSKL-LQ--HATTIYL--H---HAIADFA-EALASKMPGNLKVVYFVNSGTEANELAMLMARLSTGNLG  183 (477)
Q Consensus       113 ~~p~v~~Av~~~l~~-~~--~~~~~~~--~---~~~~~l~-~~La~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~~  183 (477)
                      ..|.|.++...-+.. +.  +...+|.  .   ...+.++ ++..++++...-.| =..||+.||.+++....  .++++
T Consensus        35 ~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~anV-qp~SGs~An~av~~all--~pGD~  111 (405)
T d1kl1a_          35 VSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANV-QPHSGAQANMAVYFTVL--EHGDT  111 (405)
T ss_dssp             CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSEEEC-CCSSHHHHHHHHHHHHC--CTTCE
T ss_pred             CCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCccee-eccCchHHHHHHHHHhc--CCCCE
Confidence            578888887655532 21  1111111  1   2234444 33344554433233 34699999988776543  47788


Q ss_pred             EEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcC-CCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCC
Q 011777          184 MIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYH-GSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQG  262 (477)
Q Consensus       184 ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~  262 (477)
                      |+.++...-|+...........        ..+..+.++.... ...+      .++++++.+.   .+++.||+-... 
T Consensus       112 im~l~l~~GGHlshg~~~~~~g--------~~~~~~~y~~d~~~~~ID------~d~l~~~a~~---~kPklIi~G~S~-  173 (405)
T d1kl1a_         112 VLGMNLSHGGHLTHGSPVNFSG--------VQYNFVAYGVDPETHVID------YDDVREKARL---HRPKLIVAAASA-  173 (405)
T ss_dssp             EEEECGGGTCCGGGTCTTSHHH--------HHSEEEEECBCTTTCSBC------HHHHHHHHHH---HCCSEEEECCSS-
T ss_pred             EEEeecccccccccCccccccc--------eEEEEEEeccchhccccc------HHHHHHHHHh---hCcceEEecccc-
Confidence            9888755544322111110000        0122222221111 1112      4778777763   356778775432 


Q ss_pred             CCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeCHHHH
Q 011777          263 VGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTTPEIA  339 (477)
Q Consensus       263 ~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~~~~~  339 (477)
                           .+-+-.+++++++|++.|++|++|-.+. |+--.|  .+.-.. . ..|++|.+  |.|.| .+-|.+++++++.
T Consensus       174 -----y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g--~~~~P~-~-~aDvvt~tThKtlrG-Prgg~I~~~~~~~  243 (405)
T d1kl1a_         174 -----YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAG--LHPNPV-P-YAHFVTTTTHKTLRG-PRGGMILCQEQFA  243 (405)
T ss_dssp             -----CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTT--SSCCST-T-TCSEEEEESSSTTCC-CSCEEEEECHHHH
T ss_pred             -----cccccChHHHHHHHhhhCCEEecchhhHhhhhhhh--hcCChh-h-hhhheeccccccccC-CCCceEEecchhH
Confidence                 2222237999999999999999998854 442223  221111 2 25888766  99975 3558999999988


Q ss_pred             HhhcccccccCCCCcHHHHHHHH-HHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeC
Q 011777          340 NVMAQKIQFNTFGGNPVCSAGGL-AVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTD  415 (477)
Q Consensus       340 ~~~~~~~~~~t~~~~~~~~aaa~-a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~  415 (477)
                      +.+......+..+++.+...|+. .++.....   .++.+++.++.+.|.+.|.+.  .+.++..- -...++++++...
T Consensus       244 ~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~--G~~vv~gg-Td~H~vlvdl~~~  320 (405)
T d1kl1a_         244 KQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE--GFTLVSGG-TDNHLLLVDLRPQ  320 (405)
T ss_dssp             HHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TCEEGGGS-CSSSEEEEECGGG
T ss_pred             HHHHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC--CceeecCC-Cccceeecccccc
Confidence            88876555566665544444444 33443222   356677777888888877664  22222211 1345677776432


Q ss_pred             CCCCCccHHHHHHHHHHHHHcCceeeccC--------CCCCEEEEeCCCC----CcHHHHHHHHHHHHHHHh
Q 011777          416 RKEKTPAKAETAVLFEKLRELGVLVGKGG--------LHGNVFRIKPPMC----FTKDDADFLVDALDYSMS  475 (477)
Q Consensus       416 ~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------~~~~~iRi~p~~~----~t~e~i~~~l~~l~~~l~  475 (477)
                      .    .   ......+.|.+.||.+....        ...+-|||..|..    ..++|+.++.+.|.++++
T Consensus       321 ~----~---~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~  385 (405)
T d1kl1a_         321 Q----L---TGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK  385 (405)
T ss_dssp             T----C---CHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred             C----C---cHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            1    1   12344456777799886321        1225699976644    467999999999988875

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=1.1e-08  Score=98.45  Aligned_cols=323  Identities=14%  Similarity=0.081  Sum_probs=179.9

Q ss_pred             CCCHHHHHHHHHHHhh-cc--ccccccC--C---hHHHHHHHHHH-hhCCCCCCEEEEeCChHHHHHHHHHHHHhccCCc
Q 011777          112 HCHPDVLNAIFEQSKL-LQ--HATTIYL--H---HAIADFAEALA-SKMPGNLKVVYFVNSGTEANELAMLMARLSTGNL  182 (477)
Q Consensus       112 h~~p~v~~Av~~~l~~-~~--~~~~~~~--~---~~~~~l~~~La-~~~~~~~~~v~~~~sGseA~~~Al~~ar~~~~~~  182 (477)
                      +.+|.|.+++..-+.. +.  +...+|.  .   +..+.|+...+ ++++.....| -..||+.||.+++....  .+++
T Consensus        37 ~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~anV-qp~SGs~AN~av~~All--~pGD  113 (416)
T d1dfoa_          37 YTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANV-QPHSGSQANFAVYTALL--EPGD  113 (416)
T ss_dssp             CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEEC-CCSSHHHHHHHHHHHHC--CTTC
T ss_pred             cCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCccee-ecccCccHHHHHHHHhc--CCCC
Confidence            3578888887654432 11  1111111  1   33445554444 4454433333 35799999998887543  4778


Q ss_pred             eEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCC
Q 011777          183 GMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQG  262 (477)
Q Consensus       183 ~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~  262 (477)
                      +|+..+...-|+...........        ..+..++++.......+      .+++++..+.   .+++.||+-... 
T Consensus       114 ~Il~l~l~~GGHlshg~~~~~~g--------~~~~~~~y~~d~~~~ID------yd~l~~~a~~---~kPklIi~G~S~-  175 (416)
T d1dfoa_         114 TVLGMNLAHGGHLTHGSPVNFSG--------KLYNIVPYGIDATGHID------YADLEKQAKE---HKPKMIIGGFSA-  175 (416)
T ss_dssp             EEEEECTTTTCCGGGTCTTSHHH--------HHSEEEEECBCSSSSBC------HHHHHHHHHH---HCCSEEEEECSS-
T ss_pred             eeeeccccccccccccccccccC--------ceEEEEecccCCccCcc------HHHHHHHHHH---hccceEEecccc-
Confidence            88888765444332221111000        01222222211111122      4777777763   355677775421 


Q ss_pred             CCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCcceeee--cccccCccceEEEEeC---H
Q 011777          263 VGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIVTM--AKGIGNGLPLGAVVTT---P  336 (477)
Q Consensus       263 ~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~pig~v~~~---~  336 (477)
                           .+-+-.+++++++|++.|++|++|..|. |+--.|  .+... +. ..|++|.  .|+|.| .+-|.++++   +
T Consensus       176 -----y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g--~~~sP-~~-~aDvvt~tThKtlrG-PrggiI~~~~~~~  245 (416)
T d1dfoa_         176 -----YSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAG--VYPNP-VP-HAHVVTTTTHKTLAG-PRGGLILAKGGSE  245 (416)
T ss_dssp             -----CCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHT--SSCCC-TT-TSSEEEEESSSTTCC-CSCEEEEESSCCH
T ss_pred             -----cccccCHHHHHHHHHhcCceEEcchhhhhcceecc--ccCCc-cc-ccceeeeehhhcccC-CCceEEEeccchH
Confidence                 1222227999999999999999999865 442223  11111 12 2488865  499975 345888875   5


Q ss_pred             HHHHhhcccccccCCCCcHHHHHHH-HHHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEE
Q 011777          337 EIANVMAQKIQFNTFGGNPVCSAGG-LAVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMEL  412 (477)
Q Consensus       337 ~~~~~~~~~~~~~t~~~~~~~~aaa-~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~  412 (477)
                      ++.+.+......+..+++.+...|+ ..++.....   .++.+++.++.+.|.+.|.+.  .+.++..- -...++.+++
T Consensus       246 ~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~--G~~iv~gg-TdnHlvlvdl  322 (416)
T d1dfoa_         246 ELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLER--GYKVVSGG-TDNHLFLVDL  322 (416)
T ss_dssp             HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT--TCEEGGGS-CSSSEEEEEC
T ss_pred             hHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC--CcccccCC-CCCceeEEEe
Confidence            7777666544445555553444443 344554332   356777788888888887664  22322211 1345667776


Q ss_pred             eeCCCCCCccHHHHHHHHHHHHHcCceeeccC--------CCCCEEEEeCCCC----CcHHHHHHHHHHHHHHHh
Q 011777          413 VTDRKEKTPAKAETAVLFEKLRELGVLVGKGG--------LHGNVFRIKPPMC----FTKDDADFLVDALDYSMS  475 (477)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------~~~~~iRi~p~~~----~t~e~i~~~l~~l~~~l~  475 (477)
                      .+..       .....+.+.|.+.||.+....        ...+-|||..|..    ..++|++++.+.|.++++
T Consensus       323 ~~~~-------~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~  390 (416)
T d1dfoa_         323 VDKN-------LTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLD  390 (416)
T ss_dssp             GGGT-------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             cccC-------CCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            4321       123456667777899885321        1235699976644    467999999999888875

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=98.99  E-value=1.4e-07  Score=92.38  Aligned_cols=288  Identities=15%  Similarity=0.149  Sum_probs=166.7

Q ss_pred             hHHHHHHHHHHhhCCCCCCEEE-EeCChHHHHHHHHHHHHhccCCceEEEEccCccCCcccccccccCCCCCCCCCCCCe
Q 011777          138 HAIADFAEALASKMPGNLKVVY-FVNSGTEANELAMLMARLSTGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEI  216 (477)
Q Consensus       138 ~~~~~l~~~La~~~~~~~~~v~-~~~sGseA~~~Al~~ar~~~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~  216 (477)
                      +..-++.+.|+++++  ++.+- =...|+.|...++.+++.+++++++++.... |..+.++.......        .|+
T Consensus       108 q~l~e~q~~l~eltG--md~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~-~p~~~~v~~t~a~~--------~g~  176 (437)
T d1wyua1         108 QATFEYQTMIAELAG--LEIANASMYDGATALAEGVLLALRETGRMGVLVSQGV-HPEYRAVLRAYLEA--------VGA  176 (437)
T ss_dssp             HHHHHHHHHHHHHHT--SSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTS-CHHHHHHHHHHHHH--------TTC
T ss_pred             HHHHHHHHHHHHhhC--CCccccCchHHHHHHHHHHHHHHhhhccccccccccc-ChHHhhhhhhhccc--------cee
Confidence            345688999999984  45332 2347888888899999999999998876553 33333332222111        133


Q ss_pred             eeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccC
Q 011777          217 HHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIAETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTG  296 (477)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g  296 (477)
                      ..+.++.... ...         +    . .-.+++++|++... +.-|.+..    ++++.+++++.|.++|.|--...
T Consensus       177 ~vv~v~~~~~-~~~---------~----~-~~~~~~Aavmi~~P-nt~G~~ed----~~~i~~~~h~~G~l~~~~ad~~a  236 (437)
T d1wyua1         177 KLLTLPLEGG-RTP---------L----P-EVGEEVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLS  236 (437)
T ss_dssp             EEEEECCBTT-BCC---------C----C-CCCTTEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTG
T ss_pred             eEEeeecccc-cch---------h----h-hhccceeEEEEccc-cccccccc----hHHHHHHhhhccceEEeeechhh
Confidence            3333322110 000         0    0 01368899888765 44565543    79999999999999988754322


Q ss_pred             ccCCCCCCccccccCCCcceeee-ccccc-----CccceEEEEeCHHHHHhhcccc------------------------
Q 011777          297 FGRTGSHYWGFETQGVIPDIVTM-AKGIG-----NGLPLGAVVTTPEIANVMAQKI------------------------  346 (477)
Q Consensus       297 fgr~G~~~~~~~~~gv~pDivt~-sK~lg-----~G~pig~v~~~~~~~~~~~~~~------------------------  346 (477)
                      ++-.    -.-..+|  .|+++. +|.||     ||...|++.+++++...+....                        
T Consensus       237 l~~l----~~Pg~~G--aDi~~g~~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhI  310 (437)
T d1wyua1         237 LGVL----KPPGAYG--ADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYI  310 (437)
T ss_dssp             GGTB----CCHHHHT--CSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHH
T ss_pred             hhcc----ccccccc--cceEeeccceeccccCCCcCccccccccchhhccccccccccccccCCcccceeecccccccc
Confidence            2111    0011223  366643 35544     3567799999998877664321                        


Q ss_pred             -----cccCCCCcHHHHHHHHHHHHhhchhh---HHHHHHHHHHHHHHHHHHHHHhCCCceeeeccceeEEEEEeeCCCC
Q 011777          347 -----QFNTFGGNPVCSAGGLAVLRVIDKER---RQAHCADVGSHLLGRLRTLQERHDIIGDVRGRGLMVGMELVTDRKE  418 (477)
Q Consensus       347 -----~~~t~~~~~~~~aaa~a~l~~l~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~v~g~g~~~~i~~~~~~~~  418 (477)
                           .++..+++.+.+..+...+..+..+.   .-++...+..|+.++|.++    +.+..+.....|--+.+..+.  
T Consensus       311 rRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~----~g~~~~~~~~~f~ef~v~~~~--  384 (437)
T d1wyua1         311 RRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEV----PGVRPFTPKPFFNEFALALPK--  384 (437)
T ss_dssp             HGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TTCEECSCSSBCSEEEEECSS--
T ss_pred             cccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhc----CCeeccCCCCeeeEEEEECCC--
Confidence                 11122334444444445555554443   3445555667777777553    222222222222223222111  


Q ss_pred             CCccHHHHHHHHHHHHHcCceeecc--C-CCCCEEEEeCCCCCcHHHHHHHHHHHHHHH
Q 011777          419 KTPAKAETAVLFEKLRELGVLVGKG--G-LHGNVFRIKPPMCFTKDDADFLVDALDYSM  474 (477)
Q Consensus       419 ~~~~~~~~~~~~~~l~~~Gv~v~~~--~-~~~~~iRi~p~~~~t~e~i~~~l~~l~~~l  474 (477)
                            ...++.++|+++|+.....  . ...+.+.++|.=..|++|||+++++|++++
T Consensus       385 ------~~~~i~k~L~d~G~~~~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil  437 (437)
T d1wyua1         385 ------DPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL  437 (437)
T ss_dssp             ------CHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             ------CHHHHHHHHHhCCCCCCcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence                  2567899999999975332  1 124789999998999999999999999874

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=98.77  E-value=8.7e-07  Score=87.58  Aligned_cols=316  Identities=15%  Similarity=0.162  Sum_probs=172.6

Q ss_pred             CCCHHHHHHHHHHHhhccccccccCC-h-------HHHHHHHHHHhhCCCCCCEEEE-eCChHHHHHHHHHHHHhcc---
Q 011777          112 HCHPDVLNAIFEQSKLLQHATTIYLH-H-------AIADFAEALASKMPGNLKVVYF-VNSGTEANELAMLMARLST---  179 (477)
Q Consensus       112 h~~p~v~~Av~~~l~~~~~~~~~~~~-~-------~~~~l~~~La~~~~~~~~~v~~-~~sGseA~~~Al~~ar~~~---  179 (477)
                      |=+|.|++.+.+.   +..+ +.|.. +       ..-++...+++++  +++.+-. ...|+.|...|+.+++.++   
T Consensus        76 hy~P~v~~~~~~~---~TaY-TPYQPaEiSQG~LQalfEfQtmi~eLT--GMdvaNaS~yDGatA~aeA~~ma~r~~~~~  149 (471)
T d1wyub1          76 KYNPKLHEEAARL---FADL-HPYQDPRTAQGALRLMWELGEYLKALT--GMDAITLEPAAGAHGELTGILIIRAYHEDR  149 (471)
T ss_dssp             CCCCHHHHHHHHT---TSSC-CTTSCGGGCHHHHHHHHHHHHHHHHHH--TCSEEECCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCcchhhhHHHH---Hhcc-CCCCCHHHHHHHHHHHHHHHHHHHHHh--CCCccccccchHHHHHHHHHHHHHHHhhhc
Confidence            4568888887642   2211 12332 2       3458888899998  4453221 2367777777777776553   


Q ss_pred             C---CceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcCCCCCCCHHHHHHHHHHHHhccCCCCeeEEE
Q 011777          180 G---NLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYHGSFGSDAARYAQDLQDHIDFGTSGKVAGFI  256 (477)
Q Consensus       180 ~---~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi  256 (477)
                      +   +..++.....+|..........            +...+..+.......+      .+.++...    .+++++++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~------~~~~~~~~----~~~~a~v~  207 (471)
T d1wyub1         150 GEGRTRRVVLVPDSAHGSNPATASMA------------GYQVREIPSGPEGEVD------LEALKREL----GPHVAALM  207 (471)
T ss_dssp             TCTTTCCEEEEETTSCTHHHHHHHHT------------TCEEEEECBCTTSSBC------HHHHHHHC----STTEEEEE
T ss_pred             ccccccccccCCcccccceeeeeecc------------cceeeccccccccccc------chhhhhhh----hcccccee
Confidence            1   1234444455554332222211            1111111111111111      24444433    35788888


Q ss_pred             ecccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCcccCccCCCCCCccccccCCCcceeee--ccccc-----Cccce
Q 011777          257 AETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQTGFGRTGSHYWGFETQGVIPDIVTM--AKGIG-----NGLPL  329 (477)
Q Consensus       257 ~epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~~~~~~~gv~pDivt~--sK~lg-----~G~pi  329 (477)
                      +...+..|+...    ..+++.++++++|.++++|-+.-... .+  +..-.  +..-|+++.  ++.+|     ||.-+
T Consensus       208 v~~p~~~g~~e~----~~~~~~~~~h~~g~~~~~~~~~~~~~-~~--l~~p~--~~g~div~vg~~q~~G~P~~~GGP~~  278 (471)
T d1wyub1         208 LTNPNTLGLFER----RILEISRLCKEAGVQLYYDGANLNAI-MG--WARPG--DMGFDVVHLNLHKTFTVPHGGGGPGS  278 (471)
T ss_dssp             ECSSCTTSCCCT----THHHHHHHHHHHTCEEEEEGGGGGGT-TT--TCCHH--HHTCSEEECCTTTTTCCCCTTSCCCC
T ss_pred             eccCCCcccccc----hhhhhHHHHHhccccccccccchhhh-hh--ccccC--cccccccccccccccccccccccccc
Confidence            887666654332    37888999999998888775422110 01  00000  111244432  35554     34668


Q ss_pred             EEEEeCHHHHHhhccc----------------cc---ccCCCCcHHHHHHHHHHHHhhchh---hHHHHHHHHHHHHHHH
Q 011777          330 GAVVTTPEIANVMAQK----------------IQ---FNTFGGNPVCSAGGLAVLRVIDKE---RRQAHCADVGSHLLGR  387 (477)
Q Consensus       330 g~v~~~~~~~~~~~~~----------------~~---~~t~~~~~~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~  387 (477)
                      |++.++++++..+..+                .|   -...+++.+...++...+..+..+   ++-+....+..|+.++
T Consensus       279 G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~  358 (471)
T d1wyub1         279 GPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKEL  358 (471)
T ss_dssp             CCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceeehhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHH
Confidence            9999999988776532                01   112334455555555566666554   3556677778888888


Q ss_pred             HHHHHHhCCCceeeeccceeE-EEEEeeCCCCCCccHHHHHHHHHHHHHcCceeecc---CCCCCEEEEeCCCCCcHHHH
Q 011777          388 LRTLQERHDIIGDVRGRGLMV-GMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKG---GLHGNVFRIKPPMCFTKDDA  463 (477)
Q Consensus       388 L~~l~~~~~~~~~v~g~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~---~~~~~~iRi~p~~~~t~e~i  463 (477)
                      |++.  .+...    ..+.++ -+.+..      +.+....++.+.|++.|++-...   ....+.+-|++.=.+|++||
T Consensus       359 L~~~--G~~~~----~~~~ff~EFvv~~------~~~~~~~~i~k~L~~~G~~~~~~~~p~~~~~~llv~vTE~~tkedI  426 (471)
T d1wyub1         359 LKEK--GYRVP----YDGPSMHEFVAQP------PEGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETL  426 (471)
T ss_dssp             HHHT--TCBCS----SCSSCCSCEEEBC------STTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHH
T ss_pred             Hhhc--Cceec----cCcceeeEEeecC------CCCCCHHHHHHHHHHcCCCCCcccCcCCCCCeEEEecCCCCCHHHH
Confidence            8542  22221    123222 222211      11112456888999999865321   11246788988888999999


Q ss_pred             HHHHHHHHHHHhh
Q 011777          464 DFLVDALDYSMSK  476 (477)
Q Consensus       464 ~~~l~~l~~~l~~  476 (477)
                      |.++++|++++++
T Consensus       427 D~lv~aL~~i~~e  439 (471)
T d1wyub1         427 EAFAEAMGALLKK  439 (471)
T ss_dssp             HHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999875

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.75  E-value=4.2e-07  Score=88.55  Aligned_cols=329  Identities=13%  Similarity=0.060  Sum_probs=173.1

Q ss_pred             CCCHHHHHHHHHHHhh-cc--ccccccC--Ch---HHHHHH-HHHHhhCCCCCC--EE-EEeCChHHHHHHHHHHHHhcc
Q 011777          112 HCHPDVLNAIFEQSKL-LQ--HATTIYL--HH---AIADFA-EALASKMPGNLK--VV-YFVNSGTEANELAMLMARLST  179 (477)
Q Consensus       112 h~~p~v~~Av~~~l~~-~~--~~~~~~~--~~---~~~~l~-~~La~~~~~~~~--~v-~~~~sGseA~~~Al~~ar~~~  179 (477)
                      +..|.|.+++..-+.. +.  +...+|.  .+   .++.++ ++..+.++.+.+  .+ +=..||+.||.+++....  .
T Consensus        42 ~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all--~  119 (470)
T d1rv3a_          42 FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALV--E  119 (470)
T ss_dssp             CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHT--C
T ss_pred             cCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHhc--C
Confidence            3578888887654432 11  1111111  22   233444 444555644321  11 234599999998887543  3


Q ss_pred             CCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCCcC-CCCCCCHHHHHHHHHHHHhccCCCCeeEEEec
Q 011777          180 GNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDPYH-GSFGSDAARYAQDLQDHIDFGTSGKVAGFIAE  258 (477)
Q Consensus       180 ~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~e  258 (477)
                      ++++|+.++-.--|+..........   +.......+..+.++.... ...+      .+++++..+.   .+++.||+-
T Consensus       120 pgD~im~~~l~~GGHlshg~~~~~~---~~~~~~~~~~~~~y~v~~~~~~ID------yd~l~~~a~~---~kPklIi~G  187 (470)
T d1rv3a_         120 PHGRIMGLDLPDGGHLTHGFMTDKK---KISATSIFFESMAYKVNPDTGYID------YDRLEENARL---FHPKLIIAG  187 (470)
T ss_dssp             TTCEEEEECGGGTCCGGGCCBCSSC---BCSHHHHHSEEEEECBCTTTCSBC------HHHHHHHHHH---HCCSEEEEC
T ss_pred             CCCeEeeeccccCCcccccccccCC---CcccccceeEeeEEEEecccCccc------HHHHHHHHHh---hCcceEeec
Confidence            6788888764433322111000000   0000000122222221111 1112      4777777663   356778875


Q ss_pred             ccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCcceeeec--ccccCccceEEEEeC
Q 011777          259 TIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVTT  335 (477)
Q Consensus       259 pi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~~  335 (477)
                      ...      .+-+-.+++++++|++.|++|++|-.+. |+--.|  .+.-.. . ..|++|.+  |.|.| .+-|.++++
T Consensus       188 ~S~------y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g--~~~sPl-~-~aDvvt~tTHKtlrG-PrgGiI~~~  256 (470)
T d1rv3a_         188 TSC------YSRNLDYGRLRKIADENGAYLMADMAHISGLVVAG--VVPSPF-E-HCHVVTTTTHKTLRG-CRAGMIFYR  256 (470)
T ss_dssp             CSS------CCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHT--SSCCGG-G-TCSEEEEESSGGGCC-CSCEEEEEE
T ss_pred             hhh------ccccCCHHHHHHHHhccCCeEEecchhhhhhcccc--ccCChh-h-eeeeeeeehhhhccC-CcceEEEEc
Confidence            422      2222337999999999999999998864 442223  121111 1 23888765  99975 344888876


Q ss_pred             HH---------------HHHhhcccccccCCCCcHHHHHHHH-HHHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhCC
Q 011777          336 PE---------------IANVMAQKIQFNTFGGNPVCSAGGL-AVLRVIDK---ERRQAHCADVGSHLLGRLRTLQERHD  396 (477)
Q Consensus       336 ~~---------------~~~~~~~~~~~~t~~~~~~~~aaa~-a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~  396 (477)
                      ++               +.+.+......+..+++.+...|++ .++.....   .+..+++.++.+.|.+.|.+.  .+.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~--G~~  334 (470)
T d1rv3a_         257 RGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL--GYK  334 (470)
T ss_dssp             CSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT--TCE
T ss_pred             cccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhC--Cce
Confidence            53               5555554444455555544444444 34554433   245566666677776666553  222


Q ss_pred             CceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-------CCCCEEEEeCCCC----CcHHHHHH
Q 011777          397 IIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-------LHGNVFRIKPPMC----FTKDDADF  465 (477)
Q Consensus       397 ~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~iRi~p~~~----~t~e~i~~  465 (477)
                      ++..- -...++.+++....       ....++.+.|.+.||.+....       ...+-|||..|..    ..++|+.+
T Consensus       335 v~~gg-TdnHlvlvdl~~~g-------~~g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~~e~dm~~  406 (470)
T d1rv3a_         335 IVTGG-SDNHLILVDLRSKG-------TDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQK  406 (470)
T ss_dssp             EGGGS-CSSSEEEEEGGGGT-------CCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHH
T ss_pred             eccCC-CCCceEEEeecccC-------CcHHHHHHHHHHcCcEECCCcCCCCCCCCCCCeeEecCHHHHhCCCCHHHHHH
Confidence            22211 12456666653211       113455666777899885421       1235699976543    46789988


Q ss_pred             HHHHHHHHHh
Q 011777          466 LVDALDYSMS  475 (477)
Q Consensus       466 ~l~~l~~~l~  475 (477)
                      +.+.|.++++
T Consensus       407 iA~~I~~~l~  416 (470)
T d1rv3a_         407 VAHFIHRGIE  416 (470)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888887763

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=98.70  E-value=5.3e-07  Score=87.51  Aligned_cols=328  Identities=13%  Similarity=0.038  Sum_probs=167.1

Q ss_pred             CCCHHHHHHHHHHHhh-cccc--------ccccCChHHHHHH-HHHHhhCCCCCCE---EEEeCChHHHHHHHHHHHHhc
Q 011777          112 HCHPDVLNAIFEQSKL-LQHA--------TTIYLHHAIADFA-EALASKMPGNLKV---VYFVNSGTEANELAMLMARLS  178 (477)
Q Consensus       112 h~~p~v~~Av~~~l~~-~~~~--------~~~~~~~~~~~l~-~~La~~~~~~~~~---v~~~~sGseA~~~Al~~ar~~  178 (477)
                      +..|.|.+++..-+.. +...        ...+. +..+.++ ++..+++..+...   =+=..||+.||.+++....  
T Consensus        38 ~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~i-D~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~all--  114 (463)
T d2a7va1          38 FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVV-DEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL--  114 (463)
T ss_dssp             CCCHHHHHHHTSGGGTCCCCC------------C-THHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC--
T ss_pred             cCCHHHHHHhcchhcccccCCCCCccccCCchhH-HHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHHHc--
Confidence            3578888877554432 1110        01122 3334444 4455566655441   1345789999988776543  


Q ss_pred             cCCceEEEEccCccCCcccccccccCCCCCCCCCCCCeeeecCCCC-cCCCCCCCHHHHHHHHHHHHhccCCCCeeEEEe
Q 011777          179 TGNLGMIALRNAYHGGSSGTIGLTALNTWKYPIPQGEIHHVVNPDP-YHGSFGSDAARYAQDLQDHIDFGTSGKVAGFIA  257 (477)
Q Consensus       179 ~~~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~le~~i~~~~~~~~a~vi~  257 (477)
                      .++++|+.++-..-|+.........   .+.......+..+++... .....+      .++++++.+.   .+++.||+
T Consensus       115 ~pgD~Im~l~l~~GGHlshg~~~~~---~~~~~~g~~~~~~~Y~~d~~~~~ID------yd~~~~~a~~---~kPklIi~  182 (463)
T d2a7va1         115 QPHDRIMGLDLPDGGHLTHGYMSDV---KRISATSIFFESMPYKLNPKTGLID------YNQLALTARL---FRPRLIIA  182 (463)
T ss_dssp             CSCEECCC----------------------------------CCBCTTTCSBC------HHHHHHHHHH---HCCSEEEE
T ss_pred             CCCceEEeeccCcCccccccccccc---ccccceeeEeeeeeeeccCCCCcCc------HHHHHHHHhh---cCCceEEe
Confidence            3677777765433222111000000   000000001111111110 011112      4777777763   35677877


Q ss_pred             cccCCCCCeeeCCchhHHHHHHHHHHhCcEEEEcCccc-CccCCCCCCccccccCCCcceeeec--ccccCccceEEEEe
Q 011777          258 ETIQGVGGAVELAPGYLKLVYDIVRKAGGVCIADEVQT-GFGRTGSHYWGFETQGVIPDIVTMA--KGIGNGLPLGAVVT  334 (477)
Q Consensus       258 epi~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pig~v~~  334 (477)
                      -...      .+-+-.+++++++|++.|++|++|-.+. |+--.|  .+.... . ..|++|.+  |.|.| .+-|.+++
T Consensus       183 G~S~------y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g--~~~sP~-~-~aDvvt~tTHKTlrG-PrgGiIl~  251 (463)
T d2a7va1         183 GTSA------YARLIDYARMREVCDEVKAHLLADMAHISGLVAAK--VIPSPF-K-HADIVTTTTHKTLRG-ARSGLIFY  251 (463)
T ss_dssp             CCSS------CCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTT--SSCCGG-G-TCSEEEEESSGGGCS-CSCEEEEE
T ss_pred             cccc------cccccCHHHHHHHhhcccceEEechhhhhHHhhhh--hhcChh-h-hhhhhhchhhhhhcC-CCceEEEE
Confidence            5422      2223337999999999999999998865 443233  221111 2 24888765  99975 34478887


Q ss_pred             CH---------------HHHHhhcccccccCCCCcHHHHHHHHH-HHHhhch---hhHHHHHHHHHHHHHHHHHHHHHhC
Q 011777          335 TP---------------EIANVMAQKIQFNTFGGNPVCSAGGLA-VLRVIDK---ERRQAHCADVGSHLLGRLRTLQERH  395 (477)
Q Consensus       335 ~~---------------~~~~~~~~~~~~~t~~~~~~~~aaa~a-~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~  395 (477)
                      ++               ++.+.+......+..+++.+...|+.+ ++....+   .++.+++.++.+.|.+.|.+.  .+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~--G~  329 (463)
T d2a7va1         252 RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER--GY  329 (463)
T ss_dssp             ECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred             cccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhC--CC
Confidence            65               444445443334445555444444443 3443322   346677777777777777654  23


Q ss_pred             CCceeeeccceeEEEEEeeCCCCCCccHHHHHHHHHHHHHcCceeeccC-------CCCCEEEEeCCCC----CcHHHHH
Q 011777          396 DIIGDVRGRGLMVGMELVTDRKEKTPAKAETAVLFEKLRELGVLVGKGG-------LHGNVFRIKPPMC----FTKDDAD  464 (477)
Q Consensus       396 ~~~~~v~g~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~iRi~p~~~----~t~e~i~  464 (477)
                      .++..- -...++.+++....       .......+.|.+.||.+....       ...+-|||..|..    ..++|+.
T Consensus       330 ~vv~gg-TdnHlvlvdl~~~~-------~~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e~dm~  401 (463)
T d2a7va1         330 SLVSGG-TDNHLVLVDLRPKG-------LDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFR  401 (463)
T ss_dssp             EEGGGS-CSSSEEEEECTTTT-------CCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHH
T ss_pred             eeecCC-CCCceeeeeccccC-------CCHHHHHHHHHhccCccCCccCCCCCCCCCCCceEeCCHHHHhCCCCHHHHH
Confidence            333211 12345566653211       123456677888899886431       1235699976644    3568888


Q ss_pred             HHHHHHHHHHh
Q 011777          465 FLVDALDYSMS  475 (477)
Q Consensus       465 ~~l~~l~~~l~  475 (477)
                      ++.+.|.+++.
T Consensus       402 ~iA~~I~~~l~  412 (463)
T d2a7va1         402 RVVDFIDEGVN  412 (463)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888877763